<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:22:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316930" ref_strand="+" ref_description="SGN-E316930 [cTOA-27-J3]">
      <seq>ggtgtaaagaggaaagaagggccggagtaggaacaagttggaggatatatagtggtaataagcggtcaccctcctcacccagtgattgatttgtctcatcgatcgaagttgagcacataaacttaacgtcagttatttttttttgaggtcaatttcgatatgaaagatttgttatatccagttgactcgttggtatctccactacacattacaacaaaaaccagagttttctccaatgctcaaattcgaattcccatcaaacgtgtcggaaagaggtgttattttgcaattaaggctgtattagattcggcatcgattgatgaactgaggcatgaagaaccagatatcaagaatccagctttgtcaacttcctatcgaaattctgagttttcaaagcctaatcagactgttttggatgctcaaaccaaagtttgtactggccccacacaaaccaagcctctcaatgaggaacaagccctcaaagttttggacaccattttgagatcagcaaagggagagctcaaagatgaagagccagtatcaaaagcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="4487" stop="6025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4787" g_stop="5294" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5295" i_stop="5680" i_length="386">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5681" g_stop="5725" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="553" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E316930" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4787" e_stop="5294"/>
          <exon e_start="5681" e_stop="5725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTAAAGAGGAAAGAAGGGCCGGAGTAGGAACAAGTTGGAGGATATATAGTGGTAATAAGCGGTCACCCTCCTCACCCAGTGATTGATTTGTCTCATCGATCGAAGTTGAGCACATAAACTTAACGTCAGTTATTTTTTTTTGAGGTCAATTTCGATATGAAAGATTTGTTATATCCAGTTGACTCGTTGGTATCTCCACTACACATTACAACAAAAACCAGAGTTTTCTCCAATGCTCAAATTCGAATTCCCATCAAACGTGTCGGAAAGAGGTGTTATTTTGCAATTAAGGCTGTATTAGATTCGGCATCGATTGATGAACTGAGGCATGAAGAACCAGATATCAAGAATCCAGCTTTGTCAACTTCCTATCGAAATTCTGAGTTTTCAAAGCCTAATCAGACTGTTTTGGATGCTCAAACCAAAGTTTGTACTGGCCCCACACAAACCAAGCCTCTCAATGAGGAACAAGCCCTCAAAGTTTTGGACACCATTTTGAGATCAGGTTCTTTTCATTTCTTACTTTTTCTTGTTACTCTTACATTAGGTTTGATGTCTGTCAAATATTTTGGTTAGAGATTTATATGTACATATACGGACAAGAGTGAGATTTCCCTTCTAAGTAGGCATCAAATAACTTGTATTTGAGTTCATCTACTGTTCTGATTTTGCCACTCTTCCATAATCTGCGTGCCATATATAGTTTGATCTACATTCTTGCAGAAGAATTTCGGAAGATGAAATTTAAAGGGTCCAGATATTTAAATTTAACCGAAGCCACTACAATTATTGAGGCTTGACTTCCCAATCCCTAGAGGAACACATATATTTTTGTGTAACAGTTCTTGATTAGTTACTCAAGATACTCAGTACCATATTGTTTGATTTCAGCAAAGGGAGAGCTCAAAGATGAAGAGCCAGTATCAAAAGCACAAC</genome_strand>
        <mrna_strand>GGTGTAAAGAGGAAAGAAGGGCCGGAGTAGGAACAAGTTGGAGGATATATAGTGGTAATAAGCGGTCACCCTCCTCACCCAGTGATTGATTTGTCTCATCGATCGAAGTTGAGCACATAAACTTAACGTCAGTTATTTTTTTTTGAGGTCAATTTCGATATGAAAGATTTGTTATATCCAGTTGACTCGTTGGTATCTCCACTACACATTACAACAAAAACCAGAGTTTTCTCCAATGCTCAAATTCGAATTCCCATCAAACGTGTCGGAAAGAGGTGTTATTTTGCAATTAAGGCTGTATTAGATTCGGCATCGATTGATGAACTGAGGCATGAAGAACCAGATATCAAGAATCCAGCTTTGTCAACTTCCTATCGAAATTCTGAGTTTTCAAAGCCTAATCAGACTGTTTTGGATGCTCAAACCAAAGTTTGTACTGGCCCCACACAAACCAAGCCTCTCAATGAGGAACAAGCCCTCAAAGTTTTGGACACCATTTTGAGATCAG..................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGGAGAGCTCAAAGATGAAGAGCCAGTATCAAAAGCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292990" ref_strand="+" ref_description="SGN-E292990 [cLET-12-K12]">
      <seq>aagttggaggatatatagtggtaataagcggtcaccctcctcacccagtgattgatttgtctcatcgatcgaagttgagcacataaacttaacgtcagttatttttttttgaggtcaatttcgatatgaaagatttgttatatccagttgactcgttggtatctccactacacattacaacaaaaaccagagttttctccaatgctcaaattcgaattcccatcaaacgtgtcggaaagaggtgttattttgcaattaaggctgtattagattcggcatcgattgatgaactgaggcatgaagaaccagatatcaagaatccagctttgtcaacttcctatcgaaattctgagttttcaaagcctaatcagactgttttggatgctcaaaccaaagtttgtactggccccacacaaaccaagcctctcaatgaggaacaagccctcaaagttttggacaccattttgagatcagcaaagggagagctcaaagatgaagagccagtatcaaaagcacaacttggggcattttttactgcaatgacaattcgtgcaaatgcttttccagagccaacccaatggagtgaaggggaaaggcgtgcgatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="4521" stop="6113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4821" g_stop="5294" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5295" i_stop="5680" i_length="386">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5681" g_stop="5813" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="607" r_length="133" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E292990" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4821" e_stop="5294"/>
          <exon e_start="5681" e_stop="5813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGGAGGATATATAGTGGTAATAAGCGGTCACCCTCCTCACCCAGTGATTGATTTGTCTCATCGATCGAAGTTGAGCACATAAACTTAACGTCAGTTATTTTTTTTTGAGGTCAATTTCGATATGAAAGATTTGTTATATCCAGTTGACTCGTTGGTATCTCCACTACACATTACAACAAAAACCAGAGTTTTCTCCAATGCTCAAATTCGAATTCCCATCAAACGTGTCGGAAAGAGGTGTTATTTTGCAATTAAGGCTGTATTAGATTCGGCATCGATTGATGAACTGAGGCATGAAGAACCAGATATCAAGAATCCAGCTTTGTCAACTTCCTATCGAAATTCTGAGTTTTCAAAGCCTAATCAGACTGTTTTGGATGCTCAAACCAAAGTTTGTACTGGCCCCACACAAACCAAGCCTCTCAATGAGGAACAAGCCCTCAAAGTTTTGGACACCATTTTGAGATCAGGTTCTTTTCATTTCTTACTTTTTCTTGTTACTCTTACATTAGGTTTGATGTCTGTCAAATATTTTGGTTAGAGATTTATATGTACATATACGGACAAGAGTGAGATTTCCCTTCTAAGTAGGCATCAAATAACTTGTATTTGAGTTCATCTACTGTTCTGATTTTGCCACTCTTCCATAATCTGCGTGCCATATATAGTTTGATCTACATTCTTGCAGAAGAATTTCGGAAGATGAAATTTAAAGGGTCCAGATATTTAAATTTAACCGAAGCCACTACAATTATTGAGGCTTGACTTCCCAATCCCTAGAGGAACACATATATTTTTGTGTAACAGTTCTTGATTAGTTACTCAAGATACTCAGTACCATATTGTTTGATTTCAGCAAAGGGAGAGCTCAAAGATGAAGAGCCAGTATCAAAAGCACAACTTGGGGCATTTTTTACTGCAATGACAATTCGTGCAAATGCTTTTCCAGAGCCAACCCAGTGGAGTGAAGGGGAAAGGCGTGCGATGCA</genome_strand>
        <mrna_strand>AAGTTGGAGGATATATAGTGGTAATAAGCGGTCACCCTCCTCACCCAGTGATTGATTTGTCTCATCGATCGAAGTTGAGCACATAAACTTAACGTCAGTTATTTTTTTTTGAGGTCAATTTCGATATGAAAGATTTGTTATATCCAGTTGACTCGTTGGTATCTCCACTACACATTACAACAAAAACCAGAGTTTTCTCCAATGCTCAAATTCGAATTCCCATCAAACGTGTCGGAAAGAGGTGTTATTTTGCAATTAAGGCTGTATTAGATTCGGCATCGATTGATGAACTGAGGCATGAAGAACCAGATATCAAGAATCCAGCTTTGTCAACTTCCTATCGAAATTCTGAGTTTTCAAAGCCTAATCAGACTGTTTTGGATGCTCAAACCAAAGTTTGTACTGGCCCCACACAAACCAAGCCTCTCAATGAGGAACAAGCCCTCAAAGTTTTGGACACCATTTTGAGATCAG..................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGGAGAGCTCAAAGATGAAGAGCCAGTATCAAAAGCACAACTTGGGGCATTTTTTACTGCAATGACAATTCGTGCAAATGCTTTTCCAGAGCCAACCCAATGGAGTGAAGGGGAAAGGCGTGCGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289589" ref_strand="+" ref_description="SGN-E289589 [cLET-4-G15]">
      <seq>aagttggaggatatatagtggtaataagcggtcaccctcctcacccagtgattgatttgtctcatcgatcgaagttgagcacataaacttaacgtcagttatttttttttgaggtcaatttcgatatgaaagatttgttatatccagttgactcgttggtatctccactacacattacaacaaaaaccagagttttctccaatgctcaaattcgaattcccatcaaacgtgtcggaaagaggtgttattttgcaattaaggctgtattagattcggcatcgattgatgaactgaggcatgaagaaccagatatcaagaatccagctttgtcaacttcctatcgaaattctgagttttcaaagcctaatcagactgttttggatgctcaaaccaaagtttgtactggccccacacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="4521" stop="5536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4821" g_stop="5236" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E289589" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4821" e_stop="5236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGGAGGATATATAGTGGTAATAAGCGGTCACCCTCCTCACCCAGTGATTGATTTGTCTCATCGATCGAAGTTGAGCACATAAACTTAACGTCAGTTATTTTTTTTTGAGGTCAATTTCGATATGAAAGATTTGTTATATCCAGTTGACTCGTTGGTATCTCCACTACACATTACAACAAAAACCAGAGTTTTCTCCAATGCTCAAATTCGAATTCCCATCAAACGTGTCGGAAAGAGGTGTTATTTTGCAATTAAGGCTGTATTAGATTCGGCATCGATTGATGAACTGAGGCATGAAGAACCAGATATCAAGAATCCAGCTTTGTCAACTTCCTATCGAAATTCTGAGTTTTCAAAGCCTAATCAGACTGTTTTGGATGCTCAAACCAAAGTTTGTACTGGCCCCACACAA</genome_strand>
        <mrna_strand>AAGTTGGAGGATATATAGTGGTAATAAGCGGTCACCCTCCTCACCCAGTGATTGATTTGTCTCATCGATCGAAGTTGAGCACATAAACTTAACGTCAGTTATTTTTTTTTGAGGTCAATTTCGATATGAAAGATTTGTTATATCCAGTTGACTCGTTGGTATCTCCACTACACATTACAACAAAAACCAGAGTTTTCTCCAATGCTCAAATTCGAATTCCCATCAAACGTGTCGGAAAGAGGTGTTATTTTGCAATTAAGGCTGTATTAGATTCGGCATCGATTGATGAACTGAGGCATGAAGAACCAGATATCAAGAATCCAGCTTTGTCAACTTCCTATCGAAATTCTGAGTTTTCAAAGCCTAATCAGACTGTTTTGGATGCTCAAACCAAAGTTTGTACTGGCCCCACACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705496" ref_strand="+" ref_description="SGN-E705496 [FA27BC07]">
      <seq>gtctcatcgatcgaagttgagcacataaacttaacgtcagttatttttttttgaggtcaatttcgatatgaaagatttgttatatccagttgactcgttggtatctccactacacattacaacaaaaaccagagttttctccaatgctcaaattcgaattcccatcaaacgtgtcggaaagaggtgttattttgcaattaaggctgtattagattcggcatcgattgatgaactgaggcatgaagaaccagatatcaagaatccagctttgtcaacttcctatcgaaattctgagttttcaaagcctaatcagactgttttggatgctcaaaccaaagtttgtactggccccacacaaaccaagcctctcaatgaggaacaagccctcaaagttttggacaccattttgagatcagcaaagggagagctcaaagatgaagagccagtatcaaaagcacaacttggggcattttttactgcaatgacaattcgtgcaaatgcttttccagagccaacccagtggagtgaaggggaaaggcgtgcgatgcatcgttattggcctcaattaattcgagtgcttcccaaagatatcatatttatcgctgatccagaagactcaataatgggaattggcagttcaataggccccaaatttgttggaaatagtactgccgagatgagactagttggtgccctcagggaggttttggctgggggtcatcttggatacgaggaagttcaaggtgttctaaaagacatccttccattgaaagtagaagaaatgggatcatctaatgtaagtgagtcactcctttctgcatttatgataggacaacgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="4579" stop="6404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4879" g_stop="5294" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5295" i_stop="5680" i_length="386">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5681" g_stop="6104" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="840" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E705496" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4879" e_stop="5294"/>
          <exon e_start="5681" e_stop="6104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCATCGATCGAAGTTGAGCACATAAACTTAACGTCAGTTATTTTTTTTTGAGGTCAATTTCGATATGAAAGATTTGTTATATCCAGTTGACTCGTTGGTATCTCCACTACACATTACAACAAAAACCAGAGTTTTCTCCAATGCTCAAATTCGAATTCCCATCAAACGTGTCGGAAAGAGGTGTTATTTTGCAATTAAGGCTGTATTAGATTCGGCATCGATTGATGAACTGAGGCATGAAGAACCAGATATCAAGAATCCAGCTTTGTCAACTTCCTATCGAAATTCTGAGTTTTCAAAGCCTAATCAGACTGTTTTGGATGCTCAAACCAAAGTTTGTACTGGCCCCACACAAACCAAGCCTCTCAATGAGGAACAAGCCCTCAAAGTTTTGGACACCATTTTGAGATCAGGTTCTTTTCATTTCTTACTTTTTCTTGTTACTCTTACATTAGGTTTGATGTCTGTCAAATATTTTGGTTAGAGATTTATATGTACATATACGGACAAGAGTGAGATTTCCCTTCTAAGTAGGCATCAAATAACTTGTATTTGAGTTCATCTACTGTTCTGATTTTGCCACTCTTCCATAATCTGCGTGCCATATATAGTTTGATCTACATTCTTGCAGAAGAATTTCGGAAGATGAAATTTAAAGGGTCCAGATATTTAAATTTAACCGAAGCCACTACAATTATTGAGGCTTGACTTCCCAATCCCTAGAGGAACACATATATTTTTGTGTAACAGTTCTTGATTAGTTACTCAAGATACTCAGTACCATATTGTTTGATTTCAGCAAAGGGAGAGCTCAAAGATGAAGAGCCAGTATCAAAAGCACAACTTGGGGCATTTTTTACTGCAATGACAATTCGTGCAAATGCTTTTCCAGAGCCAACCCAGTGGAGTGAAGGGGAAAGGCGTGCGATGCATCGTTATTGGCCTCAATTAATTCGAGTGCTTCCCAAAGATATCATATTTATCGCTGATCCAGAAGACTCAATAATGGGAATTGGCAGTTCAATAGGCCCCAAATTTGTTGGAAATAGTACTGCCGAGATGAGACTAGTTGGTGCCCTCAGGGAGGTTTTGGCTGGGGGTCATCTTGGATACGAGGAAGTTCAAGGTGTTCTAAAAGACATCCTTCCATTGAAAGTAGAAGAAATGGGATCATCTAATGTAAGTGAGTCACTCCTTTCTGCATTTATGATAGGACAACGAAT</genome_strand>
        <mrna_strand>GTCTCATCGATCGAAGTTGAGCACATAAACTTAACGTCAGTTATTTTTTTTTGAGGTCAATTTCGATATGAAAGATTTGTTATATCCAGTTGACTCGTTGGTATCTCCACTACACATTACAACAAAAACCAGAGTTTTCTCCAATGCTCAAATTCGAATTCCCATCAAACGTGTCGGAAAGAGGTGTTATTTTGCAATTAAGGCTGTATTAGATTCGGCATCGATTGATGAACTGAGGCATGAAGAACCAGATATCAAGAATCCAGCTTTGTCAACTTCCTATCGAAATTCTGAGTTTTCAAAGCCTAATCAGACTGTTTTGGATGCTCAAACCAAAGTTTGTACTGGCCCCACACAAACCAAGCCTCTCAATGAGGAACAAGCCCTCAAAGTTTTGGACACCATTTTGAGATCAG..................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGGAGAGCTCAAAGATGAAGAGCCAGTATCAAAAGCACAACTTGGGGCATTTTTTACTGCAATGACAATTCGTGCAAATGCTTTTCCAGAGCCAACCCAGTGGAGTGAAGGGGAAAGGCGTGCGATGCATCGTTATTGGCCTCAATTAATTCGAGTGCTTCCCAAAGATATCATATTTATCGCTGATCCAGAAGACTCAATAATGGGAATTGGCAGTTCAATAGGCCCCAAATTTGTTGGAAATAGTACTGCCGAGATGAGACTAGTTGGTGCCCTCAGGGAGGTTTTGGCTGGGGGTCATCTTGGATACGAGGAAGTTCAAGGTGTTCTAAAAGACATCCTTCCATTGAAAGTAGAAGAAATGGGATCATCTAATGTAAGTGAGTCACTCCTTTCTGCATTTATGATAGGACAACGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366477" ref_strand="+" ref_description="SGN-E366477 [cLPT-13-K7]">
      <seq>gagcacataaacttaacgtcagttatcttgttttgaggtcaatttcgatatgaaagatatgttatatccagttgactctttggtatctccactacccattacaacaaaaaccagagttttctccaatgctcaaattcgaattcccatcaaacgtgttggaaagaggtgttattatgcaattaaagctgtattagattcggcatcgattgatgaactgaggcatgaagaaccagatatcaagaatccagctttgtcaacttcctatcgaaattctgtgttatcaaagcctaatcagactgttttggatgctcaaaccaaagtttgtactggccccacacaaaccatgcctctcaatgaggaacaagccctcaaagttttggacaccattttgagatcagcatagggagagctcaaagatgaagagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="4597" stop="6009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4897" g_stop="5294" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5295" i_stop="5680" i_length="386">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5681" g_stop="5709" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="427" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E366477" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4897" e_stop="5294"/>
          <exon e_start="5681" e_stop="5709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCACATAAACTTAACGTCAGTTATTTTTTTTTGAGGTCAATTTCGATATGAAAGATTTGTTATATCCAGTTGACTCGTTGGTATCTCCACTACACATTACAACAAAAACCAGAGTTTTCTCCAATGCTCAAATTCGAATTCCCATCAAACGTGTCGGAAAGAGGTGTTATTTTGCAATTAAGGCTGTATTAGATTCGGCATCGATTGATGAACTGAGGCATGAAGAACCAGATATCAAGAATCCAGCTTTGTCAACTTCCTATCGAAATTCTGAGTTTTCAAAGCCTAATCAGACTGTTTTGGATGCTCAAACCAAAGTTTGTACTGGCCCCACACAAACCAAGCCTCTCAATGAGGAACAAGCCCTCAAAGTTTTGGACACCATTTTGAGATCAGGTTCTTTTCATTTCTTACTTTTTCTTGTTACTCTTACATTAGGTTTGATGTCTGTCAAATATTTTGGTTAGAGATTTATATGTACATATACGGACAAGAGTGAGATTTCCCTTCTAAGTAGGCATCAAATAACTTGTATTTGAGTTCATCTACTGTTCTGATTTTGCCACTCTTCCATAATCTGCGTGCCATATATAGTTTGATCTACATTCTTGCAGAAGAATTTCGGAAGATGAAATTTAAAGGGTCCAGATATTTAAATTTAACCGAAGCCACTACAATTATTGAGGCTTGACTTCCCAATCCCTAGAGGAACACATATATTTTTGTGTAACAGTTCTTGATTAGTTACTCAAGATACTCAGTACCATATTGTTTGATTTCAGCAAAGGGAGAGCTCAAAGATGAAGAGCCA</genome_strand>
        <mrna_strand>GAGCACATAAACTTAACGTCAGTTATCTTGTTTTGAGGTCAATTTCGATATGAAAGATATGTTATATCCAGTTGACTCTTTGGTATCTCCACTACCCATTACAACAAAAACCAGAGTTTTCTCCAATGCTCAAATTCGAATTCCCATCAAACGTGTTGGAAAGAGGTGTTATTATGCAATTAAAGCTGTATTAGATTCGGCATCGATTGATGAACTGAGGCATGAAGAACCAGATATCAAGAATCCAGCTTTGTCAACTTCCTATCGAAATTCTGTGTTATCAAAGCCTAATCAGACTGTTTTGGATGCTCAAACCAAAGTTTGTACTGGCCCCACACAAACCATGCCTCTCAATGAGGAACAAGCCCTCAAAGTTTTGGACACCATTTTGAGATCAG..................................................................................................................................................................................................................................................................................................................................................................................................CATAGGGAGAGCTCAAAGATGAAGAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376482" ref_strand="+" ref_description="SGN-E376482 [TUS-17-L19]">
      <seq>tcaaaccaaagtttgtactggccccacacaaaccaagcctctcaatgaggaacaagccctcaaagttttggacaccattttgagatcagcaaagggagagctcaaagatgaagagccagtatcaaaagcacaacttggggcattttttactgcaatgacaattcgtgcaaatgcttttccagagccaacccagtggagtgaaggggaaaggcgtgcgatgcatcgttattggcctcaattaattcgagtgcttcccaaagatatcatatttatcgctgatccagaagactcaataatgggaattggcagttcaataggccccaaatttgttggaaatagtactgccgagatgagactagttggtgccctcagggaggttttggctgggggtcatcttggatacgaggaagttcaaggtgttctaaaagacatccttccattgaaagtagaagaaatgggatcatctaatgtaagtgagtcactcctttctgcatttatgataggacaacgaatgaatcgggagacagaccgtgagttgaaagcctactgccttgcatttgatgatgaacttggccctgcacctattgctgatgtaaactcattgacacactacggtgaaccttatgatggtaacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="4906" stop="6629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5206" g_stop="5294" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5295" i_stop="5680" i_length="386">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5681" g_stop="6163" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="572" r_length="483" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6164" i_stop="6264" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6265" g_stop="6329" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="637" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E376482" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5206" e_stop="5294"/>
          <exon e_start="5681" e_stop="6163"/>
          <exon e_start="6265" e_stop="6329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACCAAAGTTTGTACTGGCCCCACACAAACCAAGCCTCTCAATGAGGAACAAGCCCTCAAAGTTTTGGACACCATTTTGAGATCAGGTTCTTTTCATTTCTTACTTTTTCTTGTTACTCTTACATTAGGTTTGATGTCTGTCAAATATTTTGGTTAGAGATTTATATGTACATATACGGACAAGAGTGAGATTTCCCTTCTAAGTAGGCATCAAATAACTTGTATTTGAGTTCATCTACTGTTCTGATTTTGCCACTCTTCCATAATCTGCGTGCCATATATAGTTTGATCTACATTCTTGCAGAAGAATTTCGGAAGATGAAATTTAAAGGGTCCAGATATTTAAATTTAACCGAAGCCACTACAATTATTGAGGCTTGACTTCCCAATCCCTAGAGGAACACATATATTTTTGTGTAACAGTTCTTGATTAGTTACTCAAGATACTCAGTACCATATTGTTTGATTTCAGCAAAGGGAGAGCTCAAAGATGAAGAGCCAGTATCAAAAGCACAACTTGGGGCATTTTTTACTGCAATGACAATTCGTGCAAATGCTTTTCCAGAGCCAACCCAGTGGAGTGAAGGGGAAAGGCGTGCGATGCATCGTTATTGGCCTCAATTAATTCGAGTGCTTCCCAAAGATATCATATTTATCGCTGATCCAGAAGACTCAATAATGGGAATTGGCAGTTCAATAGGCCCCAAATTTGTTGGAAATAGTACTGCCGAGATGAGACTAGTTGGTGCCCTCAGGGAGGTTTTGGCTGGGGGTCATCTTGGATACGAGGAAGTTCAAGGTGTTCTAAAAGACATCCTTCCATTGAAAGTAGAAGAAATGGGATCATCTAATGTAAGTGAGTCACTCCTTTCTGCATTTATGATAGGACAACGAATGAATCGGGAGACAGACCGTGAGTTGAAAGCCTACTGCCTTGCATTTGATGATGAACTTGGTATAATACTATTACCTTTTGTCTTAAAAATAATTGGTTGTTACTTGATACATGCCTATTGCTATAGTGTCTGCTTAAATCTTATCATCTTCCCTTATCAGGCCCTGCACCTATTGCTGATGTAAACTCATTGACACACTACGGTGAACCTTATGATGGTAACACC</genome_strand>
        <mrna_strand>TCAAACCAAAGTTTGTACTGGCCCCACACAAACCAAGCCTCTCAATGAGGAACAAGCCCTCAAAGTTTTGGACACCATTTTGAGATCAG..................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGGAGAGCTCAAAGATGAAGAGCCAGTATCAAAAGCACAACTTGGGGCATTTTTTACTGCAATGACAATTCGTGCAAATGCTTTTCCAGAGCCAACCCAGTGGAGTGAAGGGGAAAGGCGTGCGATGCATCGTTATTGGCCTCAATTAATTCGAGTGCTTCCCAAAGATATCATATTTATCGCTGATCCAGAAGACTCAATAATGGGAATTGGCAGTTCAATAGGCCCCAAATTTGTTGGAAATAGTACTGCCGAGATGAGACTAGTTGGTGCCCTCAGGGAGGTTTTGGCTGGGGGTCATCTTGGATACGAGGAAGTTCAAGGTGTTCTAAAAGACATCCTTCCATTGAAAGTAGAAGAAATGGGATCATCTAATGTAAGTGAGTCACTCCTTTCTGCATTTATGATAGGACAACGAATGAATCGGGAGACAGACCGTGAGTTGAAAGCCTACTGCCTTGCATTTGATGATGAACTTG.....................................................................................................GCCCTGCACCTATTGCTGATGTAAACTCATTGACACACTACGGTGAACCTTATGATGGTAACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208391" ref_strand="+" ref_description="SGN-E208391 [cLEC-37-B9]">
      <seq>tcaaaccaaagtttgtactggccccacacaaaccaagcctctcaatgaggaacaagccctcaaagttttggacaccattttgagatcagcaaagggagagctcaaagatgaagagccagtatcaaaagcacaacttggggcattttttactgcaatgacaattcgtgcaaatgcttttccagagccaacccagtggagtgaaggggaaaggcgtgcgatgcatcgttattggcctcaattaattcgagtgcttcccaaagatatcatatttatcgctgatccagaagactcaataatgggaattggcagttcaataggccccaaatttgttggaaatagtactgccgagatgagactagttggtgccctcagggaggttttggctgggggtcatcttggatacgaggaagttcaaggtgttctaaaagacatccttccattgaaagtagaagaaatgggatcatctaatgtaagtgagtcactcctttctgcatttatgataggacaacgaatgaatcgggagacagaccgtgagttgaaagcctactgccttgcatttgatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="4906" stop="6458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5206" g_stop="5294" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5295" i_stop="5680" i_length="386">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5681" g_stop="6158" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="567" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E208391" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5206" e_stop="5294"/>
          <exon e_start="5681" e_stop="6158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACCAAAGTTTGTACTGGCCCCACACAAACCAAGCCTCTCAATGAGGAACAAGCCCTCAAAGTTTTGGACACCATTTTGAGATCAGGTTCTTTTCATTTCTTACTTTTTCTTGTTACTCTTACATTAGGTTTGATGTCTGTCAAATATTTTGGTTAGAGATTTATATGTACATATACGGACAAGAGTGAGATTTCCCTTCTAAGTAGGCATCAAATAACTTGTATTTGAGTTCATCTACTGTTCTGATTTTGCCACTCTTCCATAATCTGCGTGCCATATATAGTTTGATCTACATTCTTGCAGAAGAATTTCGGAAGATGAAATTTAAAGGGTCCAGATATTTAAATTTAACCGAAGCCACTACAATTATTGAGGCTTGACTTCCCAATCCCTAGAGGAACACATATATTTTTGTGTAACAGTTCTTGATTAGTTACTCAAGATACTCAGTACCATATTGTTTGATTTCAGCAAAGGGAGAGCTCAAAGATGAAGAGCCAGTATCAAAAGCACAACTTGGGGCATTTTTTACTGCAATGACAATTCGTGCAAATGCTTTTCCAGAGCCAACCCAGTGGAGTGAAGGGGAAAGGCGTGCGATGCATCGTTATTGGCCTCAATTAATTCGAGTGCTTCCCAAAGATATCATATTTATCGCTGATCCAGAAGACTCAATAATGGGAATTGGCAGTTCAATAGGCCCCAAATTTGTTGGAAATAGTACTGCCGAGATGAGACTAGTTGGTGCCCTCAGGGAGGTTTTGGCTGGGGGTCATCTTGGATACGAGGAAGTTCAAGGTGTTCTAAAAGACATCCTTCCATTGAAAGTAGAAGAAATGGGATCATCTAATGTAAGTGAGTCACTCCTTTCTGCATTTATGATAGGACAACGAATGAATCGGGAGACAGACCGTGAGTTGAAAGCCTACTGCCTTGCATTTGATGATGA</genome_strand>
        <mrna_strand>TCAAACCAAAGTTTGTACTGGCCCCACACAAACCAAGCCTCTCAATGAGGAACAAGCCCTCAAAGTTTTGGACACCATTTTGAGATCAG..................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGGAGAGCTCAAAGATGAAGAGCCAGTATCAAAAGCACAACTTGGGGCATTTTTTACTGCAATGACAATTCGTGCAAATGCTTTTCCAGAGCCAACCCAGTGGAGTGAAGGGGAAAGGCGTGCGATGCATCGTTATTGGCCTCAATTAATTCGAGTGCTTCCCAAAGATATCATATTTATCGCTGATCCAGAAGACTCAATAATGGGAATTGGCAGTTCAATAGGCCCCAAATTTGTTGGAAATAGTACTGCCGAGATGAGACTAGTTGGTGCCCTCAGGGAGGTTTTGGCTGGGGGTCATCTTGGATACGAGGAAGTTCAAGGTGTTCTAAAAGACATCCTTCCATTGAAAGTAGAAGAAATGGGATCATCTAATGTAAGTGAGTCACTCCTTTCTGCATTTATGATAGGACAACGAATGAATCGGGAGACAGACCGTGAGTTGAAAGCCTACTGCCTTGCATTTGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341538" ref_strand="+" ref_description="SGN-E341538 [cTOE-23-G24]">
      <seq>cattttttactgcaatgacaattcgtgcaaatgcttttccagagccaacccagtggagtgaatgggaaaggcgtgcgatgcatcgctattggcctcaattaattcgagtgcttcccaaagatatcatatttatcgctgatccagaagactcaataatgggaattggcagttcaataggccccaaatttgttggaaatagtactgccgagatgagactagttggtgccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="5432" stop="6261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5732" g_stop="5961" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E341538" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5732" e_stop="5961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTTACTGCAATGACAATTCGTGCAAATGCTTTTCCAGAGCCAACCCAGTGGAGTGAAGGGGAAAGGCGTGCGATGCATCGTTATTGGCCTCAATTAATTCGAGTGCTTCCCAAAGATATCATATTTATCGCTGATCCAGAAGACTCAATAATGGGAATTGGCAGTTCAATAGGCCCCAAATTTGTTGGAAATAGTACTGCCGAGATGAGACTAGTTGGTGCCCTC</genome_strand>
        <mrna_strand>CATTTTTTACTGCAATGACAATTCGTGCAAATGCTTTTCCAGAGCCAACCCAGTGGAGTGAATGGGAAAGGCGTGCGATGCATCGCTATTGGCCTCAATTAATTCGAGTGCTTCCCAAAGATATCATATTTATCGCTGATCCAGAAGACTCAATAATGGGAATTGGCAGTTCAATAGGCCCCAAATTTGTTGGAAATAGTACTGCCGAGATGAGACTAGTTGGTGCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709108" ref_strand="+" ref_description="SGN-E709108 [FA42CH05]">
      <seq>cgggtgaatcttgcctgcttcatggtgtggattggatgccaccaaagggaggcattactgaagaacaaatgctgatgtttatgggggcaaacacacacttaaccccctctcaagctaaaatgcttcttgaggatgatgaagttggttttgcttatgtaagtcagcgtgaagctcgcccatctttatattcattgattgggttaagggaacatataaagaaacgtccaccactggcaacaactgagaaagttcaacaaattgtgcgggctcggggaaaggaagcaattgttgctggtttctatcatggaggctatgaagaaccattgttaatgcttatgagaagaaggggtgtgcatgctggtttggttgtcaagggcgaggaaggtgcactttcaatgacgacaaggttgcggtcagcaaatgcatcaaaaggacttcctgtaaattattgctcagggtttcgctcagtgaatttggcacctgcttgtgcagttgatggtgtatcacgtgagagtttcaatattgaggtgaatgctagtgattatggctttgcatccacagatactccaagaacagatagatctgttgcaaggaatatagagttgggtttagcagctttacgtggtgagaaaggtccagcctacgatagaattgttttaaatgctggaatggttgaccatttgcttgggtctgatggagctcaagacataagtgcagcctttgatagagccagagaagccattgacagtgggaaggccctcagaggactcctaaattacattaagatatctaacaaagtaatatcataattagaggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="6078" stop="15511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6376" g_stop="6422" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6423" i_stop="6708" i_length="286">
            <donor d_prob="0.919" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6709" g_stop="6792" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="131" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6793" i_stop="6880" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6881" g_stop="6933" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="184" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6934" i_stop="13335" i_length="6402">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13336" g_stop="13417" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="266" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13418" i_stop="13674" i_length="257">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13675" g_stop="13782" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="374" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13783" i_stop="13962" i_length="180">
            <donor d_prob="0.631" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13963" g_stop="14086" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="498" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14087" i_stop="14169" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14170" g_stop="14255" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="584" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14256" i_stop="14976" i_length="721">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14977" g_stop="15211" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="819" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E709108" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6376" e_stop="6422"/>
          <exon e_start="6709" e_stop="6792"/>
          <exon e_start="6881" e_stop="6933"/>
          <exon e_start="13336" e_stop="13417"/>
          <exon e_start="13675" e_stop="13782"/>
          <exon e_start="13963" e_stop="14086"/>
          <exon e_start="14170" e_stop="14255"/>
          <exon e_start="14977" e_stop="15211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTGAATCTTGCCTGCTTCATGGTGTGGATTGGATGCCACCAAAGGTCATATGATCCTATATGCTGAAATAACTAATATGATGTCGACTACTTTTATTTTAATCTGAAATTTATGTCCGTTGTATATGCTGAGATGCAGATTTTATTAGTAGTATACATGAATATGTGAGGAAAATGGAAATATTTACTTGAAAAGGAACCTGCTGCTACTTGAATTTGCAGAGAATGTTATGACTTTATAATGGCAGATATATAATCACATCTGTTCAATTTTGCACTTCCCATTTCTTTGAAGCAAGTGGTTTACTCAAATCTCCTTTTCTTACTCCAGGGAGGCATTACTGAAGAACAAATGCTGATGTTTATGGGGGCAAACACACACTTAACCCCCTCTCAAGCTAAAATGCTTCTTGAGGTCCATGATTCTCCCTTCCTTGATACTTTTTTTAACTTAAAACTTAAATGAATTGCTGCGGTTTCTTAGTAATCCAAATTGTATTCAGGATGATGAAGTTGGTTTTGCTTATGTAAGTCAGCGTGAAGCTCGCCCATCTTTGTATGTAGATCCAACCTTTCAGAAACCATTGATTACCTGTTTATCCTTTTTTTTTCTTTTTCTTAGTTCTTTTGTACTTTCTATGGAAAAAGTTAATTCCCCAATTAAATTCCCAGCAACTGTCCTAGATATCAATTAAAAGTAAAAGGGCAAGTTTCTGCTATGGATTCTCTAATCTGGTCTTCCCAATTCGGAAATCTGAAGACTTCTAAAGTTCTAGGTTGATCGAATCTGATATGTTTGATATGTTTGGATTCCTTCCTTCATCTATGTTATGTCTTCTTAATACTAGAGTTGGTATTTGCTGACTTCAACTCCCATCTGAACACCACACCTACATTGTGGTTTCTTCTTCACATTTTAGTTTCTTTTTTTCTTTAAATGATCAACGTGACATCATTATGTCTTTGATTGGAGCACTTCAATCATGATCTTACTTATTTGTTTGTTTTGTTTGGGGGGGGGGGGGGGGAGGGGGGGAGTTTCTTTGTGGTGCAAAACTGCAAGTATAAAACACTAAATATTGATATCTAGCTAAATTGTAAAAGAGAGTTACCACATTTATGAAAGTCATACGGAAATAATGATATAAAAATTTACATCTAAAATCTTTATACTTAGGAGGCTAAAGGGTTTTGGATGTGTCGGACTAAGATAGAATATGTGAGTGCAAATTCAAAGATGTCATGGGTGAGGTAGGCCTTAAAGTGAGGTCTGTAGAGTGGTGTTTCATTGACATTGTTGTATGTGACTGTGTGTTGGCCAGTCAAGAACTCCCATGTTCAGAAGATACGTGTTGCAGAGATGAGAAAGCTGAGGTAGATGTGTTGTAACACCCCCAAATATTTAAACTAATATTCTCACACCAACAAGTAATTCCTCGATGATGGGAACAACTCCTACTTCACAATTGCTTTACTCGAATTTTGAGACATGGAACACTTGCTTATCTTTAATTGTGCTAGTATTATAAAGAATTGTGCTAGATTAGAAAATTCTCGTTAAAATATACATATCCTTTTAATTATAGAAATCAAAGTGTGATAATTGTAGAAGTTGGCCTCCAACATTGAATTTTTTGGCAACCACCTTTTTAAAGCAAATTCTAGTGATAAATATCAGCAAAATCACATGAAAAATGTGTTCCTTTGGTTGAAATTTGAGACACACGTTACCTTGTGGTGATTAATCAAAATCTCTTTCTGAACTGTGCAATGTTAAGTATTGTTAGCATATCTAGTTGTATAGAACTCTGTTTTCAATTAATAAATACGTTTTGGAAAGCTTAAACATACAACTACATCTTTCATCAAGTACATAATGTCCAGATTGCCTTTTCAAAACTAAGTTACAATAGAGGTACTAGGACAAGCCAAATTTAGTGTTTTGTAAACATAGTGTTATTTACACATATTAGGCTTACTTTTGATGATTATCTTGTTTTATGTTAACATGATTGATCTATTGGACATTAAGGAGGATATTTAATTGTATTTTCAAGGTTTTATATACTCATGTACAAGTGACAAGAAGTAACCACGTATTTAGAAAACCTTTTAGATATATTTATAAGTTAATACACATACCCAATGTTGTGAAAGGCGATCGCCTCGTCGCCATTTCTTCATAAGTTTATACAAATACCTAGTATTGTGAAAGGCGAGGCGACTTTTCATCGCTTTTTAGAGTTGTGGCGAGGCGATATTTAAAAGGTGACGCCATGGACAGAAAGGTGTGGTTTTTTGTATACCTTCTCAAAAAAGGCAACCAATTGAGGGACTTAAAAGTTGAAAGGTAATTTTAGGGCCTTCTTTAAAAATTTTCACAACTGGGGCTCCAACTAATTGACTCGACTAGACTTCTCCGGCAACTCCAAAGTCTAACCAATACATAATTCTTCTTTTCTTCTTCAGAGATCTTCTTCCTCTAATTCATTATCCTTCTGCTTCAGACATCAGACTTACTTCCGCCTATTTTTTTGCTCATTGTTTGGACTTTTATTATATTTTTTCTCATCCAAGTTCTAGACTATTAGTATGTACTATCTATTTTCAGTTTTTGAATTGATATATTTGCTAATATGTTATTGCTATTGTCATTTTGATTATTCATGTGTGTATTTACATATTTTATTTTTGGTGGAATGGCTTGGGAGGCTCCTGTACTTGGCTATGTTTGTCACATAGATCCTTCTACTCACGATTTTGTCAATTGAACCCTTGAACCCACTGAAATATAACATTTTAAACCCCTCTGACCATTGCCTAGTCTACATGGCAACTTAATAGCTGAGCTGGAACAAACACGTGATTTCACTAGTTAAAGGGGCGTAGACATTAAATTTTGGACTAAAAACAATTAAATAAAAAAATAAAAATGAAATAAATAAATAAATGTAATATATGTCACCCTCTTTGTTTTTTCCCCAATTTCTTTTCTCTAACTATCAGTCTACCACCCTTTCTTCCCCCACTCATTTTTCCCCAATCCAATTCCCATTTCTCTCCCATTCAGTTATCGTAATTATTTCAAAATTTGTTAGATAAAATTATATGGAGAGAAGCTATTGAGAAAATAGAGGATAGGTAATATAGGTGGTGAAGTGACAAAAATTCGGCGATTTTGGAGAGTGAAGAGTGATTGTTGTATGTCTTTGTAAAATTAGGTGAAATATATTGTGTAAAATTGTAAGATGATGTTAGAGCATGTTAATATATTTTAGTGTGGTTCATTGAGAATATTCAGGTACTTTACTGTGGTTTGTCGGCATTAATGGAGGAACGATTCATGGTGGTTCAAGTTGTGGACAAAAACGTTTGTAAAAAAATGACAGAAAGTTGTGAACGATGAAAATTTGGAGAAGAACGACAGATTAGAGTTATTTAAGGCAATGATTCAGGTAAGGATGTAAGATTGCAATAGTGTGTTTTGGTGTAAAAAATGGAGGGAGGTAGTCAAGAACAAAGATGGTGAGGGAGAAACATAGTGAAAAATAAAAATAAAAATAAAAAAACGAAAAACGAAAAATAAAAATAAAAATAAAGATAAAGATAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAAAGAAATTGTAAATTTTAAATAAATTAAAAATAAATAACGTGTCATTAAAAATCTTACATGGATGATGCAGTGTTATTTTTATTGTGTGTTTGAAGTGCATGCACAACCAAAAGGGTTTAAAATGTTATGTTTCAGTGGGTTCGAGGGTTCATCTGGCAAATTCGTGAGTAGAAGGGCCTATGTGACAAACGAAGCGAAGTATAGGGGTCTCTCATGTCATTCCGCCTTTATTTTTTGGTATTAATTTGCGCCGCAATTCAAAAAGGCGAGCGGCTCGCCTTGTGGTGAAGCAGACCATTGTCTTCTTTCGCCTTTCAAAACATTGCACAAACCTTAGCCTTTAGCATACAAGTTGGCGAACAACTTCAAGAGCTCAATCTGTAGACCAACCAATCTCTCAAGTTCCTCAACTTGTACATGAGTATATACATCCTTGAAAATACAATTAAATACATTCTTTAATTTCTTGTAGTTACATCATGTTGACATAAAATAAGATTATCATCAAAAGTTAACTTAGTCGGGTGTAAATAACACTTCGTTTCCAAAACAGTAAAACTGATCAGTTCTAGTACCTCATATTGTAGCTTAGTTTTGAAAAGGAAAACGGCAAAATTGGACTTTATGTCCTTCATGAAAGATGTAGGTATATATGTTAACTTTCCAAAACGTATTTATTTCATTGAAAATAAGGTTTTATACAACTAAATATGCTAACAATACTAAAGGCCAAACCCATCTGTAGCCACCTAAATTTGACATCAATTTTCACTTGAGCACCTCAAGTAGACCTTATTCATTTTAAACAACTTAAGTAGGGGGTCGTTGTATTATATTGACATTTTTCTGACAACCAGCCAAATATATAAGATGTGTGTATTAGACTCGTCGATGACGTGTCAAAGTAGCAAATTAAATAAAGACGCGTGGCATATATATATTTATATATAAATAAATATTAAGAAAATTTATTATGAATAAAAACCTGTTTTAAAATTATTTAATTAATTAATTACTTTAAAAATTACCTATAAATAAAAAAGAAAAAGGAAAAAATTCTACAACACATTTTTTTTCTCCTCCACCATTTCCATATCTCCTCCTCCTCTAACCAATTTGGGTCATAATCCAACACCCATGATTCAAGTATCATACTATTACCATTTCTTCAATACTTCAAATTCATCCTTTTTTTCCCTCCAATTACCTTCACCATTGGAATTGCTCGTTTTGAAAGTTTCAAAGTACCCAAAAAATTTATCCATGATAAGATCAAATCATTTTATGAATTAACTTCAAATGGTTCATCAAAATAGAAAAAGTTAAAAGCTTTAAGAAGTAGAAAATTAGTATTTCAAAAATCGAATATGAATTTTTTTTTTACTTAAATAGAGAGAGGGGTTAAAATAGACCAATGAATATTTAAAGGATTCGGCAAACTTTCCGACAATGGAACTATGGAAAAAATTAGATGGAGAAATTTGATATCATGAAGAAGATATATGCTCTAGACATATTTTCGTCCTTTCTTAAATTATGTTTGTTGATTTATATTATTAATTTAATTTTCCACAATAAGAAAGGACAGAGAGGAGAAAGTTGAATATAAAATTGTGGCAAGGTGGTGGTAAATGGTGGAGGAAGTGTGGGAAGGAGAGAGAAGGAAGAAGAAGAAGAAGAAATTAAAATAAATTAAAAAAATCATAATAATTACGCCTTTCATGCGCTCAAAGTAAGTGTAACACACTAAATATGCCAACTCAGCAAAAAGTGTCAAAATGACATAGTAGGACCCTACTTAAAGTGTCTAAAGTAAATATCGTCCAGTTGAGGTGTCTATATGAAATTTGGTGCCAACATTAGGGGGCACCGATGGGTTTGGCCAATACTAAAAACTGCACGGTTCAAAACAAATTATGATTACTTACCACAAGGTAGAGTGTATCTCAAATTCATCCCTAGCTATGAGAGAGTTAGAAATGTTTCGTAGTCATAAAGGAACCAACTTCTATAGAGGAGCTCCAAAATCACATGCTATGCATAATACACGTGATATTTTTATCACTAGAGCTTACTGGGAAAAGGTGGCTGCCCAAAAAGTCATTGTTGGTTGCCGAGCGTTTGATAATATCACAGTTGATTTATATTATTAGGAGGATGTCTATCATGTCATGATAATTCACTAAACTACCCCGACACTACTCTTTATAATACCAACATAATTAAAGATAAATAAATTTTCCATGACTCAAAAGTTAAGGAATTGTGAAGTAGGAGTTGTTGCTATCATCAAAGAATGACTTGTTGGAGTGAGAATATTAGTTTAAATATTTGAGGGCATTACATGTGTGGTCATACTAGGAGTGATAAAGTTAGAATTGAGGATATCTGGAATAAGGTAGGAGTGACCCTCGAGGTGGACAAGATAAGGGAAGCGAGATTGAGATTGTTTGGACATGTGAAGAGAAAATGCATAGACGCACCAAAGAGGAGTTGTGAGATGTTGGTTATAGAATGTGCCAGGAGAGGCAAAGGTAGGCCAAAGTTGTATTGGGGAGATGTAATAAGTCAGGATATGAGATAGCTTCAGGTTATCAAGGATATGACCCTAGATAGGGTGGGTGTTGATGACACGTATTGGGGTAGAATGTTAGTAGGTAGTCTATGTTGTCTTGCTTAGGGTGGGTGGTGTTTGCTTTGGTGCGACTTTTATAATTGTAGTTCTTGTTTTTTTACTTCTATCATTGTATATTATTGTTTTTAATTATCTATCCTAGTAAGTTGTCTATGGTGTTTCGATTATCACATGATTTTTTTTTGTGTTGTTTTGACTCCTCATGGGTAGACTTTTGCACTGCTTCCTTGTTATTTGCTATATTTTCTTTACTGTCTCCTTCATACCGGGATTTGTTGCACTTGAGCCAAGAATCTTTTGGAAACAACCTCACTACCTCCACCGGGTAGTGGTTATAAGGTCTGCGTACGTTTTTCCTTCCCAGATCACTTATGGGATTTCATCGGGTATGTTGCTGTTGTACATCTAAAATCTGTATACATAGTATGCTATACTTGTCTCTAGTGGCTACTTGTTTCAATTTTCTTGCAAAATTCCCTGTCACTAATGGCTGAGCTCAACGGTTACGCACGTGGTCATTGTCCTTCTGTAGAGATCCTAGATGTTCGTTTAAGCTCGTCTCAGTAGTAGAGAGAAGTTGTCTCTTAGCTTATTGGTTTATGAATACCTGCGTTAAACTTCATATGATAATAAAAATCAGCTGATACGATGGTACATATGTTATTATCCTTGCAGATATTCATTGATTGGGTTAAGGGAACATATAAAGAAACGTCCACCACTGGCAACAACTGAGAAAGTTCAACAAATTGTGCGGGTAGGTCATGGTACTGTTTATTCCTGTTGTACCAAATGAGCCAAGTTGGCTATTTAAATTTTTTAGATTTCAGGTAGTCATGTTAATGATTTAAGTTGATTTACTCTCAATCACATGTAGGTTCTTTAGAAAGAAGCTACTAGTTTTCAGATATCTTTTTATTTTCTCCTATTTGTGTATATTTACCTTCAAAACACCAGAAGCTCGCTGGCTTGAACAAAATGGTCTGCAGTTGAAATGTGCTGTTTTTTCTTCAGGCTCGGGGAAAGGAAGCAATTGTTGCTGGTTTCTATCATGGAGGCTATGAAGAACCATTGTTAATGCTTATGAGAAGAAGGGGTGTGCATGCTGGTTTGGTTGTCAAGGTACTTCATAGCTTGCAAGAGTTACTTTTCTTTTTTTTTGTTTGGGGGGCCGGGGGTGGGGGTGGGGGGGTTGGGAAGTAGTGGGGGATGAACCATCCACTGTCTTTTATCATCTCTGACCTGAGTAAACTCGTGCAGGCATTGATTTCATGTAATCTTTGTATATGTTTGCATCTTTAGGGCGAGGAAGGTGCACTTTCAATGACGACAAGGTTGCGGTCAGCAAATGCATCAAAAGGACTTCCTGTAAATTATTGCTCAGGGTTTCGCTCAGTGAATTTGGCACCTGCTTGTGCAGTTGATGGTACGTGTTTACTGTACTGTCAGTGATTTTATCCTTTACCGTCTGTGTTGAGTTGCAAGCTCAAGCCTATTAAGATGTCGCAGGTGTATCACGTGAGAGTTTCAATATTGAGGTGAATGCTAGTGATTATGGCTTTGCATCCACAGATACTCCAAGAACAGATAGATCTGTAAGCTCCATCTCTCTTGTTCTCTTCCAAATGTTTTTTCGGTTACCGGGTTTTGATTTGTATTTTTAGTACAAAATTTGTCAGATCAGTGATTGATATTTATTAAGCTTGCTGATTATCTTAAAGGCATAAAATATGGACAAACTATTCCTTTTCTCTTATTAATATCATGGTGATAGACTATTTTTAAATAATAAAAGCTAAGAGATGGTGTTAAATTGTTGAAGATGTATCGGTTATTAAGATTGATGTACCTTTCTGAAAGGTACTTAATGGGTTAATTACCAAAAAGATAGAACCGACACAACTTCTAAATGCCTGCTATAGAACCGACACAACTTCTAAATACCTGCTAGCTTTCAGTTATCATTTTGCATGTGACACTGATTGCTCTTGGTCATTGTATAATTTGACTATTCTATTTGTGGCACATCAATTCTAAAAAAGTATAAATGATCATTTGCTTCTGTAAAGTTAATTATGTGTAAGACATCATCTTTGCTTAGTTTGGGATCTAAAATTTCTATACTGAAGGGAAGACTAGGCTGATCGTCTTAACATGGTTGCTACCCTCTCAAATGAGCATAATTTATGTGAAGAAGATGAGTTTGATTGTTTCAACTTAATTGCTTCTCTCTCAACTTGTAGGCTACCTCCTTGGGCTTTTATCTCAAGGAAAATCAGGATTTTTAATACTCCGTTTATTTCTGCATTTATTTAGGTTGCAAGGAATATAGAGTTGGGTTTAGCAGCTTTACGTGGTGAGAAAGGTCCAGCCTACGATAGAATTGTTTTAAATGCTGGAATGGTTGACCATTTGCTTGGGTCTGATGGAGCTCAAGACATAAGTGCAGCCTTTGATAGAGCCAGAGAAGCCATTGACAGTGGGAAGGCCCTCAGAGGACTCCTAAATTACATTAAGATATCTAACAAAGTAATATCATAATTAGAGGCCT</genome_strand>
        <mrna_strand>CGGGTGAATCTTGCCTGCTTCATGGTGTGGATTGGATGCCACCAAAG..............................................................................................................................................................................................................................................................................................GGAGGCATTACTGAAGAACAAATGCTGATGTTTATGGGGGCAAACACACACTTAACCCCCTCTCAAGCTAAAATGCTTCTTGAG........................................................................................GATGATGAAGTTGGTTTTGCTTATGTAAGTCAGCGTGAAGCTCGCCCATCTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCATTGATTGGGTTAAGGGAACATATAAAGAAACGTCCACCACTGGCAACAACTGAGAAAGTTCAACAAATTGTGCGG.................................................................................................................................................................................................................................................................GCTCGGGGAAAGGAAGCAATTGTTGCTGGTTTCTATCATGGAGGCTATGAAGAACCATTGTTAATGCTTATGAGAAGAAGGGGTGTGCATGCTGGTTTGGTTGTCAAG....................................................................................................................................................................................GGCGAGGAAGGTGCACTTTCAATGACGACAAGGTTGCGGTCAGCAAATGCATCAAAAGGACTTCCTGTAAATTATTGCTCAGGGTTTCGCTCAGTGAATTTGGCACCTGCTTGTGCAGTTGATG...................................................................................GTGTATCACGTGAGAGTTTCAATATTGAGGTGAATGCTAGTGATTATGGCTTTGCATCCACAGATACTCCAAGAACAGATAGATCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAAGGAATATAGAGTTGGGTTTAGCAGCTTTACGTGGTGAGAAAGGTCCAGCCTACGATAGAATTGTTTTAAATGCTGGAATGGTTGACCATTTGCTTGGGTCTGATGGAGCTCAAGACATAAGTGCAGCCTTTGATAGAGCCAGAGAAGCCATTGACAGTGGGAAGGCCCTCAGAGGACTCCTAAATTACATTAAGATATCTAACAAAGTAATATCATAATTAGAGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219704" ref_strand="+" ref_description="SGN-E219704 [cLEL-24-K4](-)">
      <seq>gttttaaagtttcaaagtacccaaaaaatttatccatgataagatccaatccttttatgaattaacttcaaatggttcatcaaaatagaaaaagttaaaagctttaagaagtagaaaattagtatttccaaaatcgaatatgaattttttttttacttaaatagagagaggggttaaaatagacccatgaatatttaaaggattcggcaaactttccggcaatggaactatggaaaaaattagatggagaaatttgatatcatgaagaagatatatgctctagacatattttcgtcccttcttaaattatgtttgttgatttatattattaatttaattttcccccataagaaagggcagagaggagaaagttgaatataaaattgtggcaaggtggtggtaaatggtggaggaagtgtgggaaggagagagaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="10953" stop="12026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11253" g_stop="11728" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E219704" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11253" e_stop="11728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGAAAGTTTCAAAGTACCCAAAAAATTTATCCATGATAAGATCAAATCATTTTATGAATTAACTTCAAATGGTTCATCAAAATAGAAAAAGTTAAAAGCTTTAAGAAGTAGAAAATTAGTATTTCAAAAATCGAATATGAATTTTTTTTTTACTTAAATAGAGAGAGGGGTTAAAATAGACCAATGAATATTTAAAGGATTCGGCAAACTTTCCGACAATGGAACTATGGAAAAAATTAGATGGAGAAATTTGATATCATGAAGAAGATATATGCTCTAGACATATTTTCGTCCTTTCTTAAATTATGTTTGTTGATTTATATTATTAATTTAATTTTCCACAATAAGAAAGGACAGAGAGGAGAAAGTTGAATATAAAATTGTGGCAAGGTGGTGGTAAATGGTGGAGGAAGTGTGGGAAGGAGAGAGAAGGAAGAAGAAGAAGAAGAAATTAAAATAAATTAAAAAAATC</genome_strand>
        <mrna_strand>GTTTT-AAAGTTTCAAAGTACCCAAAAAATTTATCCATGATAAGATCCAATCCTTTTATGAATTAACTTCAAATGGTTCATCAAAATAGAAAAAGTTAAAAGCTTTAAGAAGTAGAAAATTAGTATTTCCAAAATCGAATATGAATTTTTTTTTTACTTAAATAGAGAGAGGGGTTAAAATAGACCCATGAATATTTAAAGGATTCGGCAAACTTTCCGGCAATGGAACTATGGAAAAAATTAGATGGAGAAATTTGATATCATGAAGAAGATATATGCTCTAGACATATTTTCGTCCCTTCTTAAATTATGTTTGTTGATTTATATTATTAATTTAATTTTCCCCCATAAGAAAGGGCAGAGAGGAGAAAGTTGAATATAAAATTGTGGCAAGGTGGTGGTAAATGGTGGAGGAAGTGTGGGAAGGAGAGAGAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220040" ref_strand="+" ref_description="SGN-E220040 [cLEL-24-K4](-)">
      <seq>aaaagtttaaagcttttagaagtagaaaattagtatttccaaaatcgaatatgaattttttttttacttaaataaagaaaggggttaaaatagacccatgaatatttaaaggattcggcaaactttccggcaatggaactatggaaaaaattagatggagaaatttgatatcatgaaaaagatatatgctctagacatattttcgtcccttcttaaaatatgtttggtgatttaaattattaatttaattttcccccataagaaagggcagagaggagaaagttgaatataaaattgtggcaaggtggtggtaaatggtggaggaagtgtgggaaggagagagaagggaaaaaaaaaaaaacacaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="11043" stop="12026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11343" g_stop="11729" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E220040" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11343" e_stop="11729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTAAAAGCTTTAAGAAGTAGAAAATTAGTATTTCAAAAATCGAATATGAATTTTTTTTTTACTTAAATAGAGAGAGGGGTTAAAATAGACCAATGAATATTTAAAGGATTCGGCAAACTTTCCGACAATGGAACTATGGAAAAAATTAGATGGAGAAATTTGATATCATGAAGAAGATATATGCTCTAGACATATTTTCGTCCTTTCTTAAATTATGTTTGTTGATTTATATTATTAATTTAATTTTCCACAATAAGAAAGGACAGAGAGGAGAAAGTTGAATATAAAATTGTGGCAAGGTGGTGGTAAATGGTGGAGGAAGTGTGGGAAGGAGAGAGAAGGAAGAAGAAGAAGAAGAAATTAAAATAAATTAAAAAAATCA</genome_strand>
        <mrna_strand>AAAAGTTTAAAGCTTTTAGAAGTAGAAAATTAGTATTTCCAAAATCGAATATGAATTTTTTTTTTACTTAAATAAAGAAAGGGGTTAAAATAGACCCATGAATATTTAAAGGATTCGGCAAACTTTCCGGCAATGGAACTATGGAAAAAATTAGATGGAGAAATTTGATATCATGAAAAAGATATATGCTCTAGACATATTTTCGTCCCTTCTTAAAATATGTTTGGTGATTTAAATTATTAATTTAATTTTCCCCCATAAGAAAGGGCAGAGAGGAGAAAGTTGAATATAAAATTGTGGCAAGGTGGTGGTAAATGGTGGAGGAAGTGTGGGAAGGAGAGAGAAGGGAAAAAAAAAAAAACACAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323297" ref_strand="+" ref_description="SGN-E323297 [cTOB-28-H8]">
      <seq>gctcgcccgtctttatattcattgattgggttaagggaacatataaagaaacgtccaccactggcaacaactgagaaagttcaacaaattgtgcgggctcggggaaaggaagcaattgttgctggtttctatcatggaggctatgaagaaccattgttaatgcttatgagaagaaggggtgtgcatgctggtttggttgtcaagggcgaggaaggtgcactttcaatgacgacaaggttgcggtcagcaaatgcatcaaaaggacttcctgtaaattattgctcagggtttcgctcagtgaatttggcacctgcttgtgcagttgatggtgtatcacgtgagagtttcaatattgaggtgaatgctagtgattatggctttgcatccacagatactccaagaacagatagatctgttgcaaggaatatagagttgggtttagcagctttacgtggtgagaaatgtccagcctacgatagaattgttttaaatgctggaatggatgaccatttgcttgggtctgatggagctcaagacataagtgcagcctttgatagagccagataagcccattgacagggggaaagccctcagaggactcctaaattacattaagatatctaacaaagtaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="13036" stop="15496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13336" g_stop="13417" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="96" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13418" i_stop="13674" i_length="257">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13675" g_stop="13782" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="204" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13783" i_stop="13962" i_length="180">
            <donor d_prob="0.631" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13963" g_stop="14086" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="328" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14087" i_stop="14169" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14170" g_stop="14255" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="414" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14256" i_stop="14976" i_length="721">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14977" g_stop="15196" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="635" r_length="221" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E323297" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13336" e_stop="13417"/>
          <exon e_start="13675" e_stop="13782"/>
          <exon e_start="13963" e_stop="14086"/>
          <exon e_start="14170" e_stop="14255"/>
          <exon e_start="14977" e_stop="15196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTCATTGATTGGGTTAAGGGAACATATAAAGAAACGTCCACCACTGGCAACAACTGAGAAAGTTCAACAAATTGTGCGGGTAGGTCATGGTACTGTTTATTCCTGTTGTACCAAATGAGCCAAGTTGGCTATTTAAATTTTTTAGATTTCAGGTAGTCATGTTAATGATTTAAGTTGATTTACTCTCAATCACATGTAGGTTCTTTAGAAAGAAGCTACTAGTTTTCAGATATCTTTTTATTTTCTCCTATTTGTGTATATTTACCTTCAAAACACCAGAAGCTCGCTGGCTTGAACAAAATGGTCTGCAGTTGAAATGTGCTGTTTTTTCTTCAGGCTCGGGGAAAGGAAGCAATTGTTGCTGGTTTCTATCATGGAGGCTATGAAGAACCATTGTTAATGCTTATGAGAAGAAGGGGTGTGCATGCTGGTTTGGTTGTCAAGGTACTTCATAGCTTGCAAGAGTTACTTTTCTTTTTTTTTGTTTGGGGGGCCGGGGGTGGGGGTGGGGGGGTTGGGAAGTAGTGGGGGATGAACCATCCACTGTCTTTTATCATCTCTGACCTGAGTAAACTCGTGCAGGCATTGATTTCATGTAATCTTTGTATATGTTTGCATCTTTAGGGCGAGGAAGGTGCACTTTCAATGACGACAAGGTTGCGGTCAGCAAATGCATCAAAAGGACTTCCTGTAAATTATTGCTCAGGGTTTCGCTCAGTGAATTTGGCACCTGCTTGTGCAGTTGATGGTACGTGTTTACTGTACTGTCAGTGATTTTATCCTTTACCGTCTGTGTTGAGTTGCAAGCTCAAGCCTATTAAGATGTCGCAGGTGTATCACGTGAGAGTTTCAATATTGAGGTGAATGCTAGTGATTATGGCTTTGCATCCACAGATACTCCAAGAACAGATAGATCTGTAAGCTCCATCTCTCTTGTTCTCTTCCAAATGTTTTTTCGGTTACCGGGTTTTGATTTGTATTTTTAGTACAAAATTTGTCAGATCAGTGATTGATATTTATTAAGCTTGCTGATTATCTTAAAGGCATAAAATATGGACAAACTATTCCTTTTCTCTTATTAATATCATGGTGATAGACTATTTTTAAATAATAAAAGCTAAGAGATGGTGTTAAATTGTTGAAGATGTATCGGTTATTAAGATTGATGTACCTTTCTGAAAGGTACTTAATGGGTTAATTACCAAAAAGATAGAACCGACACAACTTCTAAATGCCTGCTATAGAACCGACACAACTTCTAAATACCTGCTAGCTTTCAGTTATCATTTTGCATGTGACACTGATTGCTCTTGGTCATTGTATAATTTGACTATTCTATTTGTGGCACATCAATTCTAAAAAAGTATAAATGATCATTTGCTTCTGTAAAGTTAATTATGTGTAAGACATCATCTTTGCTTAGTTTGGGATCTAAAATTTCTATACTGAAGGGAAGACTAGGCTGATCGTCTTAACATGGTTGCTACCCTCTCAAATGAGCATAATTTATGTGAAGAAGATGAGTTTGATTGTTTCAACTTAATTGCTTCTCTCTCAACTTGTAGGCTACCTCCTTGGGCTTTTATCTCAAGGAAAATCAGGATTTTTAATACTCCGTTTATTTCTGCATTTATTTAGGTTGCAAGGAATATAGAGTTGGGTTTAGCAGCTTTACGTGGTGAGAAAGGTCCAGCCTACGATAGAATTGTTTTAAATGCTGGAATGGTTGACCATTTGCTTGGGTCTGATGGAGCTCAAGACATAAGTGCAGCCTTTGATAGAGCCAGAGAAG-CCATTGACAGTGGGAAGGCCCTCAGAGGACTCCTAAATTACATTAAGATATCTAACAAAGTAATAT</genome_strand>
        <mrna_strand>ATATTCATTGATTGGGTTAAGGGAACATATAAAGAAACGTCCACCACTGGCAACAACTGAGAAAGTTCAACAAATTGTGCGG.................................................................................................................................................................................................................................................................GCTCGGGGAAAGGAAGCAATTGTTGCTGGTTTCTATCATGGAGGCTATGAAGAACCATTGTTAATGCTTATGAGAAGAAGGGGTGTGCATGCTGGTTTGGTTGTCAAG....................................................................................................................................................................................GGCGAGGAAGGTGCACTTTCAATGACGACAAGGTTGCGGTCAGCAAATGCATCAAAAGGACTTCCTGTAAATTATTGCTCAGGGTTTCGCTCAGTGAATTTGGCACCTGCTTGTGCAGTTGATG...................................................................................GTGTATCACGTGAGAGTTTCAATATTGAGGTGAATGCTAGTGATTATGGCTTTGCATCCACAGATACTCCAAGAACAGATAGATCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAAGGAATATAGAGTTGGGTTTAGCAGCTTTACGTGGTGAGAAATGTCCAGCCTACGATAGAATTGTTTTAAATGCTGGAATGGATGACCATTTGCTTGGGTCTGATGGAGCTCAAGACATAAGTGCAGCCTTTGATAGAGCCAGATAAGCCCATTGACAGGGGGAAAGCCCTCAGAGGACTCCTAAATTACATTAAGATATCTAACAAAGTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376481" ref_strand="+" ref_description="SGN-E376481 [TUS-17-L19](-)">
      <seq>gatggtgtatcacgtgagagtttcaatattgaggtgaatgctagtgattatggctttgcatccacagatactccaagaacagatagatctgttgcaaggaatatagagttgggtttagcagctttacgtggtgagaaaggtccagcctacgatagaattgttttaaatgctggaatggttgaccatttgcttgggtctgatggagctcaagacataagtgcagcctttgatagagccagagaagccattgacagtgggaaggccctcagaggactcctaaattacattaagatatctaacaaagtaatatcataattagaggcctgtaggattttttccttcctcctttggtcattttaatcccagcaaacaagtgcaatagtctacggataatgaaattgagaacctttcttccatcttataaagctgctgtacatgaacacgaagattcactgttccagttttgcttaagcaagcctttgttgtcaccactagttcactgctactccgatatgttgataccacacacacagtaaggatttagtgtttctgattgaagtgcaacttatgtgtgttaaataaatgtctacaatgtttctcagttgatactcgtttgaatagttgttgatctgatgtcacttgtcttagattagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="13869" stop="15841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14166" g_stop="14255" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14256" i_stop="14976" i_length="721">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14977" g_stop="15540" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="654" r_length="564" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E376481" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14166" e_stop="14255"/>
          <exon e_start="14977" e_stop="15540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGTGTATCACGTGAGAGTTTCAATATTGAGGTGAATGCTAGTGATTATGGCTTTGCATCCACAGATACTCCAAGAACAGATAGATCTGTAAGCTCCATCTCTCTTGTTCTCTTCCAAATGTTTTTTCGGTTACCGGGTTTTGATTTGTATTTTTAGTACAAAATTTGTCAGATCAGTGATTGATATTTATTAAGCTTGCTGATTATCTTAAAGGCATAAAATATGGACAAACTATTCCTTTTCTCTTATTAATATCATGGTGATAGACTATTTTTAAATAATAAAAGCTAAGAGATGGTGTTAAATTGTTGAAGATGTATCGGTTATTAAGATTGATGTACCTTTCTGAAAGGTACTTAATGGGTTAATTACCAAAAAGATAGAACCGACACAACTTCTAAATGCCTGCTATAGAACCGACACAACTTCTAAATACCTGCTAGCTTTCAGTTATCATTTTGCATGTGACACTGATTGCTCTTGGTCATTGTATAATTTGACTATTCTATTTGTGGCACATCAATTCTAAAAAAGTATAAATGATCATTTGCTTCTGTAAAGTTAATTATGTGTAAGACATCATCTTTGCTTAGTTTGGGATCTAAAATTTCTATACTGAAGGGAAGACTAGGCTGATCGTCTTAACATGGTTGCTACCCTCTCAAATGAGCATAATTTATGTGAAGAAGATGAGTTTGATTGTTTCAACTTAATTGCTTCTCTCTCAACTTGTAGGCTACCTCCTTGGGCTTTTATCTCAAGGAAAATCAGGATTTTTAATACTCCGTTTATTTCTGCATTTATTTAGGTTGCAAGGAATATAGAGTTGGGTTTAGCAGCTTTACGTGGTGAGAAAGGTCCAGCCTACGATAGAATTGTTTTAAATGCTGGAATGGTTGACCATTTGCTTGGGTCTGATGGAGCTCAAGACATAAGTGCAGCCTTTGATAGAGCCAGAGAAGCCATTGACAGTGGGAAGGCCCTCAGAGGACTCCTAAATTACATTAAGATATCTAACAAAGTAATATCATAATTAGAGGCCTGTAGGATTTTTTCCTTCCTCCTTTGGTCATTTTAATCCCAGCAAACAAGTGCAATAGTCTACGGATAATGAAATTGAGAACCTTTCTTCCATCTTATAAAGCTGCTGTACATGAACACGAAGATTCACTGTTCCAGTTTTGCTTAAGCAAGCCTTTGTTGTCACCACTAGTTCACTGCTACTCCGATATGTTGATACCACACACACAGTAAGGATTTAGTGTTTCTGATTGAAGTGCAACTTATGTGTGTTAAATAAATGTCTACAATGTTTCTCAGTTGATACTCGTTTGAATAGTTGTTGATCTGATGTCACTTGTCTTAGATTAGA</genome_strand>
        <mrna_strand>GATGGTGTATCACGTGAGAGTTTCAATATTGAGGTGAATGCTAGTGATTATGGCTTTGCATCCACAGATACTCCAAGAACAGATAGATCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAAGGAATATAGAGTTGGGTTTAGCAGCTTTACGTGGTGAGAAAGGTCCAGCCTACGATAGAATTGTTTTAAATGCTGGAATGGTTGACCATTTGCTTGGGTCTGATGGAGCTCAAGACATAAGTGCAGCCTTTGATAGAGCCAGAGAAGCCATTGACAGTGGGAAGGCCCTCAGAGGACTCCTAAATTACATTAAGATATCTAACAAAGTAATATCATAATTAGAGGCCTGTAGGATTTTTTCCTTCCTCCTTTGGTCATTTTAATCCCAGCAAACAAGTGCAATAGTCTACGGATAATGAAATTGAGAACCTTTCTTCCATCTTATAAAGCTGCTGTACATGAACACGAAGATTCACTGTTCCAGTTTTGCTTAAGCAAGCCTTTGTTGTCACCACTAGTTCACTGCTACTCCGATATGTTGATACCACACACACAGTAAGGATTTAGTGTTTCTGATTGAAGTGCAACTTATGTGTGTTAAATAAATGTCTACAATGTTTCTCAGTTGATACTCGTTTGAATAGTTGTTGATCTGATGTCACTTGTCTTAGATTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305806" ref_strand="+" ref_description="SGN-E305806 [cLEX-14-H21]">
      <seq>tctgttgcaaggaatatagagttgggtttagcagctttacgtggtgagaaaggtccagcctacgatagaattgttttaaatgctggaatggttgaccatttgcttgggtctgatggagctcaagacataagtgcagcctttgatagagccagagaagccattgacagtgggaaggccctcagaggactcctaaattacattaagatatctaacaaagtaatatcataattagaggcctgtaggattttttccttcctcctttggtcattttaatcccagcagacaagtgcaatagtctacggataatgaaattgagaacctttcttccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="14677" stop="15604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14974" g_stop="15304" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E305806" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14974" e_stop="15304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTTGCAAGGAATATAGAGTTGGGTTTAGCAGCTTTACGTGGTGAGAAAGGTCCAGCCTACGATAGAATTGTTTTAAATGCTGGAATGGTTGACCATTTGCTTGGGTCTGATGGAGCTCAAGACATAAGTGCAGCCTTTGATAGAGCCAGAGAAGCCATTGACAGTGGGAAGGCCCTCAGAGGACTCCTAAATTACATTAAGATATCTAACAAAGTAATATCATAATTAGAGGCCTGTAGGATTTTTTCCTTCCTCCTTTGGTCATTTTAATCCCAGCAAACAAGTGCAATAGTCTACGGATAATGAAATTGAGAACCTTTCTTCCATC</genome_strand>
        <mrna_strand>TCTGTTGCAAGGAATATAGAGTTGGGTTTAGCAGCTTTACGTGGTGAGAAAGGTCCAGCCTACGATAGAATTGTTTTAAATGCTGGAATGGTTGACCATTTGCTTGGGTCTGATGGAGCTCAAGACATAAGTGCAGCCTTTGATAGAGCCAGAGAAGCCATTGACAGTGGGAAGGCCCTCAGAGGACTCCTAAATTACATTAAGATATCTAACAAAGTAATATCATAATTAGAGGCCTGTAGGATTTTTTCCTTCCTCCTTTGGTCATTTTAATCCCAGCAGACAAGTGCAATAGTCTACGGATAATGAAATTGAGAACCTTTCTTCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551179" ref_strand="+" ref_description="SGN-E551179 [TUS-55-K22]">
      <seq>aaactctactgtcagcgaatcaatccacagcaggaaagtacacgaagaaaaaatgtgtttattaataagtaggaatatcagaaaattcgttagtaaatattctgaagactgaatggtatttataaacaagaataatatattctgaaaggcaaccctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaaattatctctcgatcgatcatttgccaaagccgaagccgaagccgaagcgagcgagcgacgaccacgacggcgcgaggggggttcctctttccaacccttttaataattaataggagtgtttatttatttaaactctcttattttcatttccattaacgatgagggactattgccttttttattaaagcattagaggacttttcaagttcccaacctttcaagttctaaacttttcaaattcctctccttccctctatttcccatcaattcttgctacatacccaacagtaattgtttaatctttgttaagccactttttgtgttgaaattatttactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="16854" stop="18115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17154" g_stop="17417" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17418" i_stop="17527" i_length="110">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17528" g_stop="17813" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="546" r_length="289" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E551179" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17154" e_stop="17417"/>
          <exon e_start="17528" e_stop="17813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAG-AAAGATGTGTTTTTTATGAAGAAGGAAGATCAGAAAATTTATTTTTTTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATGTATTCTGAAAGGTTGCTACCCTTTTAGAATTGACACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAATTGCAACTTTTCAGAACAGTCATGGCGGGAAATTTGAATATAACGGAATTTAAAACGGGTCACTGCGCGGATCCGAGTCGGATCGGGTTACCTAAAAAGTTGAAAATAATTTTTGGCCATTTAAATTAATTAATAAATAATTAAAATAAATTATCTCTCGATCGATCATTTGCCAAAGCCCAAGCCCAAGCCCAAGCGAGCGAGCGACG---ACGACGGCGCGAGGGGGGTCCCTCTTTCCAACCCTTTTAACAATTAATAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCATTACCGATGAGGGACTATTGCCTTTTTCAATAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTTTCCTTCCATCTATTTCCCATCAATTCTTGCTACATACCCAACA</genome_strand>
        <mrna_strand>AAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAAAAATGTGTTTATTAATAAGTAGGAATATCAGAAAATTCGTT--AGTAAATATTCTGAAGACTGAATGGTATTTATAAACAAGAATAATATATTCTGAAA-G--GCAACCCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAG---TGGCGGGAATTTTTA..............................................................................................................AAATTATCTCTCGATCGATCATTTGCCAAAGCCGAAGCCGAAGCCGAAGCGAGCGAGCGACGACCACGACGGCGCGAGGGGGGTTCCTCTTTCCAACCCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCTTATTTTCATTTCCATTAACGATGAGGGACTATTGCCTTTTTTATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689001" ref_strand="+" ref_description="SGN-E689001 [t3_tus_55_K22]">
      <seq>aaactctactgtcagcgaatcaatccacagcaggaaagtacacgaagaaaaaatgtgtttattaataagtaggaatatcagaaaattcgttagtaaatattctgaagactgaatggtatttataaacaagaataatatattctgaaaggcaaccctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaaattatctctcgatcgatcatttgccaaagccgaagccgaagccgaagcgagcgagcgacgaccacgacggcgcgaggggggttcctctttccaacccttttaataattaataggagtgtttatttatttaaactctcttattttcatttccattaacgatgagggactattgccttttttattaaagcattagaggacttttcaagttcccaacctttcaagttctaaacttttcaaattcctctccttccctctatttcccatcaattcttgctacatacccaacagtaattgtttaatctttgttaagtcactttttgtgttgaaattatttactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="16854" stop="18115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17154" g_stop="17417" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17418" i_stop="17527" i_length="110">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17528" g_stop="17813" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="546" r_length="289" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E689001" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17154" e_stop="17417"/>
          <exon e_start="17528" e_stop="17813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAG-AAAGATGTGTTTTTTATGAAGAAGGAAGATCAGAAAATTTATTTTTTTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATGTATTCTGAAAGGTTGCTACCCTTTTAGAATTGACACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAATTGCAACTTTTCAGAACAGTCATGGCGGGAAATTTGAATATAACGGAATTTAAAACGGGTCACTGCGCGGATCCGAGTCGGATCGGGTTACCTAAAAAGTTGAAAATAATTTTTGGCCATTTAAATTAATTAATAAATAATTAAAATAAATTATCTCTCGATCGATCATTTGCCAAAGCCCAAGCCCAAGCCCAAGCGAGCGAGCGACG---ACGACGGCGCGAGGGGGGTCCCTCTTTCCAACCCTTTTAACAATTAATAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCATTACCGATGAGGGACTATTGCCTTTTTCAATAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTTTCCTTCCATCTATTTCCCATCAATTCTTGCTACATACCCAACA</genome_strand>
        <mrna_strand>AAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAAAAATGTGTTTATTAATAAGTAGGAATATCAGAAAATTCGTT--AGTAAATATTCTGAAGACTGAATGGTATTTATAAACAAGAATAATATATTCTGAAA-G--GCAACCCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAG---TGGCGGGAATTTTTA..............................................................................................................AAATTATCTCTCGATCGATCATTTGCCAAAGCCGAAGCCGAAGCCGAAGCGAGCGAGCGACGACCACGACGGCGCGAGGGGGGTTCCTCTTTCCAACCCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCTTATTTTCATTTCCATTAACGATGAGGGACTATTGCCTTTTTTATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242172" ref_strand="+" ref_description="SGN-E242172 [cLED-37-C23]">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="-" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="22210" stop="21216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21910" g_stop="21516" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="-" ref_id="SGN-E242172" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21910" e_stop="21516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAAAACTGTTGGATCACAAGTACAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGTTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTCGTGGAATGATTTAAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAGAAACACCGAAAAGAAGTCACGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTTAGAACAGGCCAAGAAGAAATTCAAAGTCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</genome_strand>
        <mrna_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242208" ref_strand="+" ref_description="SGN-E242208 [cLED-37-E10]">
      <seq>gtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgggattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcccgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="-" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="22206" stop="21244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21906" g_stop="21544" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="-" ref_id="SGN-E242208" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21906" e_stop="21544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAACTGTTGGATCACAAGTACAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGTTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTCGTGGAATGATTTAAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAGAAACACCGAAAAGAAGTCACGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTTAGAACAGGCCAAGAAGAAATTCAAAGTCAACTGTTATAATT</genome_strand>
        <mrna_strand>GTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGGGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCCCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538064" ref_strand="+" ref_description="SGN-E538064 [TUS-56-P20]">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaatgtgttttttaagaagtaggaagatcagaaaattcgttagtaaatattctgaagactgaatggtatttataggcaagaataatatattctgaaaggttgcaactctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaatataacggaatttaaaacgggtcacgcgcgcggatccgagtcgggtcgggttaactaaaaagttgaaaacaattcggttaatttctgttatcaactgattaattgaaaataatttttggccatttaannttattaataaataattaaaataatttgtccaaaaaatatctctcgatcatttgccaagtcgaagccgagcgagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="22058" stop="23496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22358" g_stop="23196" g_length="839"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="830" r_length="830" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E538064" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22358" e_stop="23196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATAATTGCAGACTTAAAGAAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTTATATAATTTCCTTAAGATTGTTGCCAATCCGTGTTATGAAAATCTGAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGCAAAAAATAATTAAATTTGGAAAACTTACCAGAATCTAGAATACTATTATTGATAATTTAGGAAGAAAATCCAGTCCACTGAATTCACAGTGTCTCCTTAATGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTATAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAAGATGTGTTTTTTTATGAAGAAGGAAGATCAGAAAATTTATTTTTTTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAAAATAATATATTCTGAAAGGTTGCTAC-CTTTCAGAATTGACACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCGTGAAAGTTGCAACCTTTCAGAACAGTCATGGCGGTAA-ATTTGAATATTACAGAATATAAAACGGGTCACTCGCGCGGATCCGAGTCGGGTCGGGTTAACTATAAAGTTGAAAACATTTCGGTTAAATTTTGTTATCAACTAATTTATTGAAAATAATTTTTTGCCATTTAAATTAATTAATAAATAATTAAAATAAATTTTGTCCAAAAAAATTATCTCTCGATCA</genome_strand>
        <mrna_strand>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTG-TAAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAAAATGTG-TTTTTTAAGAAGTAGGAAGATCAGAAAA-TT-CGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACTCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAG---TGGCGGGAATTTTTAAATATAACGGAATTTAAAACGGGTCACGCGCGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACAATTCGGTTAATTTCTGTTATCAACTGATTAATTGAAAATAATTTTTGGCCATTTAANNTTATTAATAAATAATTAAAAT-AA-TTTGTCC-AAAAAA-TATCTCTCGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538071" ref_strand="+" ref_description="SGN-E538071 [TUS-56-P24]">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgagggttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaatgtgttttttaagaagtaggaagatcagaaaattcgttagtaaatattctgaagactgaatggtatttataggcaagaataatatattctgaaaggttgcaactctttcagaattgagacaaccattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="22058" stop="23232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22358" g_stop="22932" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E538071" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22358" e_stop="22932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATAATTGCAGACTTAAAGAAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTTATATAATTTCCTTAAGATTGTTGCCAATCCGTGTTATGAAAATCTGAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGCAAAAAATAATTAAATTTGGAAAACTTACCAGAATCTAGAATACTATTATTGATAATTTAGGAAGAAAATCCAGTCCACTGAATTCACAGTGTCTCCTTAATGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTATAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAAGATGTGTTTTTTTATGAAGAAGGAAGATCAGAAAATTTATTTTTTTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAAAATAATATATTCTGAAAGGTTGCTAC-CTTTCAGAATTGACACGACCATTAA</genome_strand>
        <mrna_strand>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTG-TAAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGGTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAAAATGTG-TTTTTTAAGAAGTAGGAAGATCAGAAAA-TT-CGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACTCTTTCAGAATTGAGACAACCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268499" ref_strand="+" ref_description="SGN-E268499 [cLEI-13-K15]">
      <seq>ttataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="22059" stop="23066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22359" g_stop="22766" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E268499" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22359" e_stop="22766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAATTGCAGACTTAAAGAAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTTATATAATTTCCTTAAGATTGTTGCCAATCCGTGTTATGAAAATCTGAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGCAAAAAATAATTAAATTTGGAAAACTTACCAGAATCTAGAATACTATTATTGATAATTTAGGAAGAAAATCCAGTCCACTGAATTCACAGTGTCTCCTTAATGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTATAGTATAGATACCAAAAACTCTACTGTCAGCG</genome_strand>
        <mrna_strand>TTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTG-TAAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577891" ref_strand="+" ref_description="SGN-E577891 [LE08BA04]">
      <seq>ttcgtttcaaaatacttcagctcttggaatctgggtactggaatcacttctctgatcttcacgacgaacctgcaggacggaccgtcatagccatgacggaccgtcacaatcttcgtaatcccacacttggtgagacttccccatcttccttcagcagcttctctacgctgccacctacggagcgtcaaaggcacgatggaccgtcataagctcagtaggtggtctcttctacattttttcgctcaaaatctctgctttcagctttggacagatttcctgcaaaataaagagaaacttataccaaaattagcacaaaaaggcttacggacacactaaacttaaggcaaaagtattaattataccgtgaaaccacggtatatcagggacatgaactcgaaggccattgttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="-" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="40388" stop="34901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35586" g_stop="35204" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="-" ref_id="SGN-E577891" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35586" e_stop="35204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTTCAAAACACTTCAACTCTTGGAATATGGTTACTGGGATTACTTCTTTGATCTTCATGACGAACCTGCAGGACGGACCGTCATAGCCACGACGGACCGTCCCAAGCAACGTAACCCTACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCACTATGCTGCCACCTACGGACCGTCACAAGCACGATGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCTGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAAGGCTTCTAGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAGCCACGGTATATCA</genome_strand>
        <mrna_strand>TTCGTTTCAAAATACTTCAGCTCTTGGAATCTGGGTACTGGAATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAATCTTCGTAATCCCACACTTGGTGAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGAGCGTCAAAGGCACGATGGACCGTCATAAGCTCAGTAGGTGGTCTCTTCTACATTTTTTCGCTCAAAATCTCTGCTTTCAGCTTTGGACAGATTTCCTGCAAAATAAAGAGAAACTTATACCAAAATTAGCAC-AAAAAGGCTTACGGACACACTAAACTTAAGGCAAAAGTATTAATTATACCGTGAAACCACGGTATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578039" ref_strand="+" ref_description="SGN-E578039 [LE08DB10]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="-" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="40396" stop="39082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40096" g_stop="39381" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="-" ref_id="SGN-E578039" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40096" e_stop="39381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTCTTCGTTTCAAAAAACTTCAACTCTTGGAATCT-GGTACTTGGATTACTTCTCTGATCTTCATGACGAACCTGCAAGACGAACCGTCATAGCCACGACGGACCGTCACAAGCTACGTAACCCCACACTTGGTCAGACATCCCCATCTTCCTTCAGCAGCTTCACTACGCTGCCACTTACGGACCGTCAGAAGTACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTGTTCGCTCAAAATCTCTGCATTTAGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTATACACACTAAACTTAAGGAAAAAGTATTAATTATAGCGTGAAACCACGGTATATCAACACCCTAAACTTAAATTCGTTGTTTGTCCTCAAGCAACGCACTATGACTCACTACACAATCTTTGTACAATAGCATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATAAAATTTTTACATGCTATCCCGATTAGGCTTGAATTTTGTGGGATTAGAACGTGACAAAGACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCACTGAGGTGCTAACAATTCCGGTACTGCAACTAGTGTCCTCACTTTAAAACAAAATCCTCATTTTTCACACAATGATTTTAGTTTGAGTATAAGGATTAT</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCA-TTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549914" ref_strand="+" ref_description="SGN-E549914 [TUS-6-B24]">
      <seq>attctttcaccacacgtagaaagaaaggattaagatatccaaatttgaagtttatttgtgagattagtgattgtttgaagttcatgtgttgcgttcttgactcatctaacgattttgttgttccaagatgatatcaaatccggcttctagagtaagtacattattgatatagtcagacattatggtacggtcttatatcaaaaagtttacggcatttgaaggtcgattttatgtcgtttaggtcttgattatatacccatttattcaaacatttgttttaaatctcatggtataccctcgttgccttactatgttttctttcttactgagtctgtagaaagtgctaaaaaaataacaaaagggatagtgtcatacttgtgtgtgtatgttttctgccatgcacatatggttgcctaatgacattgatttttttcttgaacaggtctgcattttttttgttcttgtttattttcaaagctcattagtcgtgtttcgggtagctttcaagttgctcttttcgtggttgttatgcaagctcttgatttcgggatgaattttcttgcaagatgctcgtttctttatttgtgtgcggataacacatcccatttgagcatgtttttctgttctaaaagtttatctccgacaaccttgttgttccgtatgatatgaaggagttttgattattcattcttaaccggtagcacttgtttangtgttctctttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="108190" stop="109514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108490" g_stop="109214" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E549914" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108490" e_stop="109214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTTCACCACACGTAGAAAGAAAGGATTAAGATATCCAAATTTGAAGTTTATTTGTGAGATTAGTGATTGTTTGAAGTTCATGTGTTGCGTTCTTGACTCATCTAACGATTTTGTTGTTCCAAGATGATATCAAATCCGGCTTCTAGAGTAAGTACATTATTGATATAGTCAGACATTATGGTACGGTCTTATATCAAAAAGTTTACGGCATTTGAAGGTCGATTTTATGTCGTTTAGGTCTTGATTATATACCCATTTATTCAAACATTTGTTTTAAATCTCATGGTATACCCTCGTTGCCTTACTATGTTTTCTTTCTTACTGAGTCTGTAGAAAGTGCTAAAAAAATAACAAAAGGGATAGTGTCATACTTGTGTGTGTATGTTTTCTGCCATGCACATATGGTTGCCTAATGACATTGATTTTTTTCTTGAACAGGTCTGCATTTTTTTTGTTCTTGTTTATTTTCAAAGCTCATTAGTCGTGTTTCGGGTAGCTTTCAAGTTGCTCTTTTCGTGGTTGTTATGCAAGCTCTTGATTTCGGGATGAATTTTCTTGCAAGATGCTCGTTTCTTTATTTGTGTGCGGATAACACATCCCATTTGAGCATGTTTTTCTGTTCTAAAAGTTTATCTCCGTCAACCTTGTTGTTCCGTATGATATGAAGGAGTTTTGATTATTCATTCTTAACCGGTAGCACTTGTTTAGGTGTTCTCTTTGT</genome_strand>
        <mrna_strand>ATTCTTTCACCACACGTAGAAAGAAAGGATTAAGATATCCAAATTTGAAGTTTATTTGTGAGATTAGTGATTGTTTGAAGTTCATGTGTTGCGTTCTTGACTCATCTAACGATTTTGTTGTTCCAAGATGATATCAAATCCGGCTTCTAGAGTAAGTACATTATTGATATAGTCAGACATTATGGTACGGTCTTATATCAAAAAGTTTACGGCATTTGAAGGTCGATTTTATGTCGTTTAGGTCTTGATTATATACCCATTTATTCAAACATTTGTTTTAAATCTCATGGTATACCCTCGTTGCCTTACTATGTTTTCTTTCTTACTGAGTCTGTAGAAAGTGCTAAAAAAATAACAAAAGGGATAGTGTCATACTTGTGTGTGTATGTTTTCTGCCATGCACATATGGTTGCCTAATGACATTGATTTTTTTCTTGAACAGGTCTGCATTTTTTTTGTTCTTGTTTATTTTCAAAGCTCATTAGTCGTGTTTCGGGTAGCTTTCAAGTTGCTCTTTTCGTGGTTGTTATGCAAGCTCTTGATTTCGGGATGAATTTTCTTGCAAGATGCTCGTTTCTTTATTTGTGTGCGGATAACACATCCCATTTGAGCATGTTTTTCTGTTCTAAAAGTTTATCTCCGACAACCTTGTTGTTCCGTATGATATGAAGGAGTTTTGATTATTCATTCTTAACCGGTAGCACTTGTTTANGTGTTCTCTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368608" ref_strand="+" ref_description="SGN-E368608 [TUS-23-N2]">
      <seq>ttctttcaccacacgtagaaagaaaggattaagatatccaaatttgaagtttatttgtgagattagtgattgtttgaagttcatgtgttgcgttcttgactcatctaacgattttgttgttccaagatgatatcaaatccggcttctagagtaagtacattattgatatagtcagacattatggtacggtcttatatcaaaaagtttacggcatttgaaggtcgattttatgtcgtttaggtcttgattatatacccatttattcaaacatttgttttaaatctcatggtataccctcgttgccttactatgttttctttcttactgagtctgtagaaagtgctaaaaaaataacaaaagggatagtgtcatacttgtgtgtgtatgttttctgccatgcacatatggttgcctaatgacattgatttttttcttgaacaggtctgcattttttttgttcttgtttattttcaaagctcattagtcgtgtttcgggtagctttcaagttgctcttttcgtggttgttatgcaagctcttgatttcgggatgaattttcttgcaagatgctcgtttctttatttgtgtgcggataacacatcccatttgagcatgtttttctgttctaaaagtttatctccgtcaaccttgttgttccctatgatatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="108191" stop="109459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108491" g_stop="109159" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E368608" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108491" e_stop="109159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCACCACACGTAGAAAGAAAGGATTAAGATATCCAAATTTGAAGTTTATTTGTGAGATTAGTGATTGTTTGAAGTTCATGTGTTGCGTTCTTGACTCATCTAACGATTTTGTTGTTCCAAGATGATATCAAATCCGGCTTCTAGAGTAAGTACATTATTGATATAGTCAGACATTATGGTACGGTCTTATATCAAAAAGTTTACGGCATTTGAAGGTCGATTTTATGTCGTTTAGGTCTTGATTATATACCCATTTATTCAAACATTTGTTTTAAATCTCATGGTATACCCTCGTTGCCTTACTATGTTTTCTTTCTTACTGAGTCTGTAGAAAGTGCTAAAAAAATAACAAAAGGGATAGTGTCATACTTGTGTGTGTATGTTTTCTGCCATGCACATATGGTTGCCTAATGACATTGATTTTTTTCTTGAACAGGTCTGCATTTTTTTTGTTCTTGTTTATTTTCAAAGCTCATTAGTCGTGTTTCGGGTAGCTTTCAAGTTGCTCTTTTCGTGGTTGTTATGCAAGCTCTTGATTTCGGGATGAATTTTCTTGCAAGATGCTCGTTTCTTTATTTGTGTGCGGATAACACATCCCATTTGAGCATGTTTTTCTGTTCTAAAAGTTTATCTCCGTCAACCTTGTTGTTCCGTATGATATGAA</genome_strand>
        <mrna_strand>TTCTTTCACCACACGTAGAAAGAAAGGATTAAGATATCCAAATTTGAAGTTTATTTGTGAGATTAGTGATTGTTTGAAGTTCATGTGTTGCGTTCTTGACTCATCTAACGATTTTGTTGTTCCAAGATGATATCAAATCCGGCTTCTAGAGTAAGTACATTATTGATATAGTCAGACATTATGGTACGGTCTTATATCAAAAAGTTTACGGCATTTGAAGGTCGATTTTATGTCGTTTAGGTCTTGATTATATACCCATTTATTCAAACATTTGTTTTAAATCTCATGGTATACCCTCGTTGCCTTACTATGTTTTCTTTCTTACTGAGTCTGTAGAAAGTGCTAAAAAAATAACAAAAGGGATAGTGTCATACTTGTGTGTGTATGTTTTCTGCCATGCACATATGGTTGCCTAATGACATTGATTTTTTTCTTGAACAGGTCTGCATTTTTTTTGTTCTTGTTTATTTTCAAAGCTCATTAGTCGTGTTTCGGGTAGCTTTCAAGTTGCTCTTTTCGTGGTTGTTATGCAAGCTCTTGATTTCGGGATGAATTTTCTTGCAAGATGCTCGTTTCTTTATTTGTGTGCGGATAACACATCCCATTTGAGCATGTTTTTCTGTTCTAAAAGTTTATCTCCGTCAACCTTGTTGTTCCCTATGATATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246952" ref_strand="+" ref_description="SGN-E246952 [cLEF-41-C11]">
      <seq>ttctttcaccacacgtagaaagaaaggattaagatatccaaatttgaagtttatttgtgagattagtgattgtttgaagttcatgtgttgcgttcttgactcatctaacgattttgttgttccaagatgatatcaaatccggcttctagagtaagtacattattgatatagtcagacattatggtacggtcttatatcaaaaagtttacggcatttgaaggtcgattttatgtcgtttaggtcttgattatatacccatttattcaaacatttgttttaaatctcatggtataccctcgttgccttactatgttttctttcttactgagtctgtagaaagtgctaaaaaaataacaaaagggatagtgtcatacttgtgtgtgtatgttttctgccatgcacatatggttgcctaatgacattgatttttttcttgaacaggtctgcattttttttgttcttgtttattttcaaagctcattagtcgtgtttcgggtagctttcaagttgctcttttcgtggttgttatgcaagctcttgatttcgggatgaattttcttgcaagatgctcgtttctttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="108191" stop="109376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108491" g_stop="109076" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E246952" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108491" e_stop="109076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCACCACACGTAGAAAGAAAGGATTAAGATATCCAAATTTGAAGTTTATTTGTGAGATTAGTGATTGTTTGAAGTTCATGTGTTGCGTTCTTGACTCATCTAACGATTTTGTTGTTCCAAGATGATATCAAATCCGGCTTCTAGAGTAAGTACATTATTGATATAGTCAGACATTATGGTACGGTCTTATATCAAAAAGTTTACGGCATTTGAAGGTCGATTTTATGTCGTTTAGGTCTTGATTATATACCCATTTATTCAAACATTTGTTTTAAATCTCATGGTATACCCTCGTTGCCTTACTATGTTTTCTTTCTTACTGAGTCTGTAGAAAGTGCTAAAAAAATAACAAAAGGGATAGTGTCATACTTGTGTGTGTATGTTTTCTGCCATGCACATATGGTTGCCTAATGACATTGATTTTTTTCTTGAACAGGTCTGCATTTTTTTTGTTCTTGTTTATTTTCAAAGCTCATTAGTCGTGTTTCGGGTAGCTTTCAAGTTGCTCTTTTCGTGGTTGTTATGCAAGCTCTTGATTTCGGGATGAATTTTCTTGCAAGATGCTCGTTTCTTTATTTGTG</genome_strand>
        <mrna_strand>TTCTTTCACCACACGTAGAAAGAAAGGATTAAGATATCCAAATTTGAAGTTTATTTGTGAGATTAGTGATTGTTTGAAGTTCATGTGTTGCGTTCTTGACTCATCTAACGATTTTGTTGTTCCAAGATGATATCAAATCCGGCTTCTAGAGTAAGTACATTATTGATATAGTCAGACATTATGGTACGGTCTTATATCAAAAAGTTTACGGCATTTGAAGGTCGATTTTATGTCGTTTAGGTCTTGATTATATACCCATTTATTCAAACATTTGTTTTAAATCTCATGGTATACCCTCGTTGCCTTACTATGTTTTCTTTCTTACTGAGTCTGTAGAAAGTGCTAAAAAAATAACAAAAGGGATAGTGTCATACTTGTGTGTGTATGTTTTCTGCCATGCACATATGGTTGCCTAATGACATTGATTTTTTTCTTGAACAGGTCTGCATTTTTTTTGTTCTTGTTTATTTTCAAAGCTCATTAGTCGTGTTTCGGGTAGCTTTCAAGTTGCTCTTTTCGTGGTTGTTATGCAAGCTCTTGATTTCGGGATGAATTTTCTTGCAAGATGCTCGTTTCTTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368607" ref_strand="+" ref_description="SGN-E368607 [TUS-23-N2](-)">
      <seq>cattggcatgacttaggctctgacatttcgtagttcatattgtcgcatgatttggctaaaaaaagtattttcgtatattagtctgtttgctgctctggtctttgttttaattttagaagtatctttgctttgttattttcgggatgctaattccttatccctttcatttttccatatctaacatcaactcgagccgatattggagtctatccttgcattcctccgagtaaaactttttgagacatcctcattttgttcaagtgaaaggggagaaattacaggggaaatgactgatttatgtgccttggaatattcaaaaatggactctatgcatgtgaatatacaatgtgatacattcatatactgattgtatatgccgatataaagtcgggatatactgcataccggtgcaaaatcacagaaaatactggtggaagtgcaggaatatgtaatcaaaataaaaatataggttccaaaagtcaagaactgatcggatatataccatatacgatagtatacaatcagtgtatacgctggctgttacacataaaataggccaaggacttaaagaaatttcctgcaggtccattagtaggaatttgggccaaaggtccaaaatttgacatctccttttttccttgctatttattattatatattgactaacattatttgattaattttggttaatttaactatattcccaaaatagtaatttcccttatattcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="108985" stop="110316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109285" g_stop="110023" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E368607" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109285" e_stop="110023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGGCATGACTTAGGCTCTGACATTTCGTAGTTCATATTGTCGCATGATTTGGCTTAAAAAAAGTATTTTCGTATATTAGTCTGTTTGCTGCTCTGGTCTTTGTTTTAATTTTAGAAGTATCTTTGCTTTGTTATTTTCGGGATGCTAATTCCTTATCCCTTTCATTTTTCCATATCTAACATCAACTCGAGCCGATATTGGAGTCTATCCTTGCATTCCTCCGAGTAAAACTTTTTGAGACATCCTCATTTTGTTCAAGTGAAAGGGGAGAAATTACAGGGGAAATGACTGATTTATGTGCCTTGGAATATTCAAAAATGGACTCTATGCATGTGAATATACAATGTGATACATTCATATACTGATTGTATATGCCGATATAAAGTCGGGATATACTGCATACCGGTGCAAAATCACAGAAAATACTGGTGGAAGTGCAGGAATATGTAATCAAAATAAAAATATAGGTTCCAAAAGTCAAGAACTGATCGGATATATACCATATACGATAGTATACAATCAGTGTATACGCTGGCTGTTACACATAAAATAGGCCAAGGACTTAAAGAAATTTCCTGCAGGTCCATTAGTAGGAATTTGGGCCAAAGGTCCAAAATTTGACATCTCCTTTTTTCCTTGCTATTTATTATTATATATTGACTAACATTATTTGATTAATTTTGGTTAATTTAACTATATTCCCAAAATAGTAATTTCCCTTATATTCAATTTTTTT</genome_strand>
        <mrna_strand>CATTGGCATGACTTAGGCTCTGACATTTCGTAGTTCATATTGTCGCATGATTTGGC-TAAAAAAAGTATTTTCGTATATTAGTCTGTTTGCTGCTCTGGTCTTTGTTTTAATTTTAGAAGTATCTTTGCTTTGTTATTTTCGGGATGCTAATTCCTTATCCCTTTCATTTTTCCATATCTAACATCAACTCGAGCCGATATTGGAGTCTATCCTTGCATTCCTCCGAGTAAAACTTTTTGAGACATCCTCATTTTGTTCAAGTGAAAGGGGAGAAATTACAGGGGAAATGACTGATTTATGTGCCTTGGAATATTCAAAAATGGACTCTATGCATGTGAATATACAATGTGATACATTCATATACTGATTGTATATGCCGATATAAAGTCGGGATATACTGCATACCGGTGCAAAATCACAGAAAATACTGGTGGAAGTGCAGGAATATGTAATCAAAATAAAAATATAGGTTCCAAAAGTCAAGAACTGATCGGATATATACCATATACGATAGTATACAATCAGTGTATACGCTGGCTGTTACACATAAAATAGGCCAAGGACTTAAAGAAATTTCCTGCAGGTCCATTAGTAGGAATTTGGGCCAAAGGTCCAAAATTTGACATCTCCTTTTTTCCTTGCTATTTATTATTATATATTGACTAACATTATTTGATTAATTTTGGTTAATTTAACTATATTCCCAAAATAGTAATTTCCCTTATATTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340751" ref_strand="+" ref_description="SGN-E340751 [cTOF-5-K5]">
      <seq>agtagccaggcgggttccttcccctctcccttatcctattatacgaaaattgtactcgaaggccccaggtcgaaatctccctttctctcttgtccttcctctaaaatgggatgtctcccttcgattttctgttgatgatcgtacaaggatagagttggaagcttatgctgaagaagggatttgaatttcgaaatcaaatcccatccattttccgcccaaaaattttcttcccatttttctctcctataaatatcagtgagagaaaagggaaaaaacttctttagcttgaaaaaatattacaaaaagtagaaagattttgagtccatttttgttagcaagaacttacaagaaaaggaattactaggttataatattcatataacaaacatgcgataatttatttttttttgttatttgttgcaaaatttgttggatttctgaatcttaaaggaagatattgaagtctatccaagctcattcctatctctggttctctatacgaagaaggtacaactcgtttctcgataacatactctccttttctcctccgttttctctgtgaaatagcactttgttgctggaaattttctgctgtttgttcatctatttaatgttaattcaatggagatattggtatgacttatatngttgttgattcatttaagtagatatggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0109P04-aPIrI/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0109P04.1" temp_strand="+" temp_description="C04HBa0109P04.1  CU469490.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0109P04 sequenced_by:sanger upload_account_name:uk">
        <position start="124624" stop="125897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124924" g_stop="125597" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0109P04.1" gen_strand="+" ref_id="SGN-E340751" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0109P04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124924" e_stop="125597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGCCAGGCGGGTTCCTTCCCCTCTCCCTTATCCTATTATACGAAAATTGTACTCGAAGGCCCCAGGTCGAAATCTCCCTTTCTCTCTTGTCCTTCCTCTAAAATGGGATGTCTCCCTTCGATTTTCTGTTGATGATCGTACAAGGATAGAGTTGGAAGCTTATGCTGAAG-AGGGATTTGAATTTCGAAATCAAATCCCATCCATTTTCCGCCCAAAAATTTTCTTCCCATTTTTCTCTCCTATAAATATCAGTGAGAGAAAAGGGAAAAAACTTCTTTAGCTTGAAAAAATATTACAAAAAGTAGAAAGATTTTGAGTCCATTTTTGTTAGCAAGAACTTACAAGAAAAGGAATTACTAGGTTATAATATTCATATAACAAACATGCGATAATTTATTTTTTTTTGTTATTTGTTGCAAAATTTGTTGGATTTCTGAATCTTAAAGGAAGATATTGAAGTCTATCCAAGCTCATTCCTATCTCTGGTTCTCTATACGAAGAAGGTACAACTCGTTTCTCGATAACATACTCTCCTTTTCTCCTCCGTTTTCTCTGTGAAATAGCACTTTGTTGCTGGAAATTTTCTGCTGTTTGTTCATCTATTTAATGTTAATTCAATGGAGATATTGGTATGACTTATAT-GTTGTTGATTCATTTAAGTAGATATGGTA</genome_strand>
        <mrna_strand>AGTAGCCAGGCGGGTTCCTTCCCCTCTCCCTTATCCTATTATACGAAAATTGTACTCGAAGGCCCCAGGTCGAAATCTCCCTTTCTCTCTTGTCCTTCCTCTAAAATGGGATGTCTCCCTTCGATTTTCTGTTGATGATCGTACAAGGATAGAGTTGGAAGCTTATGCTGAAGAAGGGATTTGAATTTCGAAATCAAATCCCATCCATTTTCCGCCCAAAAATTTTCTTCCCATTTTTCTCTCCTATAAATATCAGTGAGAGAAAAGGGAAAAAACTTCTTTAGCTTGAAAAAATATTACAAAAAGTAGAAAGATTTTGAGTCCATTTTTGTTAGCAAGAACTTACAAGAAAAGGAATTACTAGGTTATAATATTCATATAACAAACATGCGATAATTTATTTTTTTTTGTTATTTGTTGCAAAATTTGTTGGATTTCTGAATCTTAAAGGAAGATATTGAAGTCTATCCAAGCTCATTCCTATCTCTGGTTCTCTATACGAAGAAGGTACAACTCGTTTCTCGATAACATACTCTCCTTTTCTCCTCCGTTTTCTCTGTGAAATAGCACTTTGTTGCTGGAAATTTTCTGCTGTTTGTTCATCTATTTAATGTTAATTCAATGGAGATATTGGTATGACTTATATNGTTGTTGATTCATTTAAGTAGATATGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>28</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4787" PGL_stop="6329"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4787" e_stop="5294"/>
            <exon e_start="5681" e_stop="6163"/>
            <exon e_start="6265" e_stop="6329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4787" e_stop="5294" e_length="508"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="5295" i_stop="5680" i_length="386"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5681" e_stop="6163" e_length="483"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="6164" i_stop="6264" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6265" e_stop="6329" e_length="65"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4787" stop="5294"/>
              <exon start="5681" stop="5725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4821" stop="5294"/>
              <exon start="5681" stop="5813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4821" stop="5236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4879" stop="5294"/>
              <exon start="5681" stop="6104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4897" stop="5294"/>
              <exon start="5681" stop="5709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5206" stop="5294"/>
              <exon start="5681" stop="6163"/>
              <exon start="6265" stop="6329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5206" stop="5294"/>
              <exon start="5681" stop="6158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5732" stop="5961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341538" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTGTAAAGAGGAAAGAAGGGCCGGAGTAGGAACAAGTTGGAGGATATATAGTGGTAATAAGCGGTCACCCTCCTCACCCAGTGATTGATTTGTCTCATCGATCGAAGTTGAGCACATAAACTTAACGTCAGTTATTTTTTTTTGAGGTCAATTTCGATATGAAAGATTTGTTATATCCAGTTGACTCGTTGGTATCTCCACTACACATTACAACAAAAACCAGAGTTTTCTCCAATGCTCAAATTCGAATTCCCATCAAACGTGTCGGAAAGAGGTGTTATTTTGCAATTAAGGCTGTATTAGATTCGGCATCGATTGATGAACTGAGGCATGAAGAACCAGATATCAAGAATCCAGCTTTGTCAACTTCCTATCGAAATTCTGAGTTTTCAAAGCCTAATCAGACTGTTTTGGATGCTCAAACCAAAGTTTGTACTGGCCCCACACAAACCAAGCCTCTCAATGAGGAACAAGCCCTCAAAGTTTTGGACACCATTTTGAGATCAG : CAAAGGGAGAGCTCAAAGATGAAGAGCCAGTATCAAAAGCACAACTTGGGGCATTTTTTACTGCAATGACAATTCGTGCAAATGCTTTTCCAGAGCCAACCCAGTGGAGTGAAGGGGAAAGGCGTGCGATGCATCGTTATTGGCCTCAATTAATTCGAGTGCTTCCCAAAGATATCATATTTATCGCTGATCCAGAAGACTCAATAATGGGAATTGGCAGTTCAATAGGCCCCAAATTTGTTGGAAATAGTACTGCCGAGATGAGACTAGTTGGTGCCCTCAGGGAGGTTTTGGCTGGGGGTCATCTTGGATACGAGGAAGTTCAAGGTGTTCTAAAAGACATCCTTCCATTGAAAGTAGAAGAAATGGGATCATCTAATGTAAGTGAGTCACTCCTTTCTGCATTTATGATAGGACAACGAATGAATCGGGAGACAGACCGTGAGTTGAAAGCCTACTGCCTTGCATTTGATGATGAACTTG : GCCCTGCACCTATTGCTGATGTAAACTCATTGACACACTACGGTGAACCTTATGATGGTAACACC</gDNA_template>
            <first_frame> G  V  K  R  K  E  G  P  E  *  E  Q  V  G  G  Y  I  V  V  I  S  G  H  P  P  H  P  V  I  D  L  S  H  R  S  K  L  S  T  *  T  *  R  Q  L  F  F  F  E  V  N  F  D  M  K  D  L  L  Y  P  V  D  S  L  V  S  P  L  H  I  T  T  K  T  R  V  F  S  N  A  Q  I  R  I  P  I  K  R  V  G  K  R  C  Y  F  A  I  K  A  V  L  D  S  A  S  I  D  E  L  R  H  E  E  P  D  I  K  N  P  A  L  S  T  S  Y  R  N  S  E  F  S  K  P  N  Q  T  V  L  D  A  Q  T  K  V  C  T  G  P  T  Q  T  K  P  L  N  E  E  Q  A  L  K  V  L  D  T  I  L  R  S   : A  K  G  E  L  K  D  E  E  P  V  S  K  A  Q  L  G  A  F  F  T  A  M  T  I  R  A  N  A  F  P  E  P  T  Q  W  S  E  G  E  R  R  A  M  H  R  Y  W  P  Q  L  I  R  V  L  P  K  D  I  I  F  I  A  D  P  E  D  S  I  M  G  I  G  S  S  I  G  P  K  F  V  G  N  S  T  A  E  M  R  L  V  G  A  L  R  E  V  L  A  G  G  H  L  G  Y  E  E  V  Q  G  V  L  K  D  I  L  P  L  K  V  E  E  M  G  S  S  N  V  S  E  S  L  L  S  A  F  M  I  G  Q  R  M  N  R  E  T  D  R  E  L  K  A  Y  C  L  A  F  D  D  E  L   : G  P  A  P  I  A  D  V  N  S  L  T  H  Y  G  E  P  Y  D  G  N  T </first_frame>
            <second_frame>  V  *  R  G  K  K  G  R  S  R  N  K  L  E  D  I  *  W  *  *  A  V  T  L  L  T  Q  *  L  I  C  L  I  D  R  S  *  A  H  K  L  N  V  S  Y  F  F  L  R  S  I  S  I  *  K  I  C  Y  I  Q  L  T  R  W  Y  L  H  Y  T  L  Q  Q  K  P  E  F  S  P  M  L  K  F  E  F  P  S  N  V  S  E  R  G  V  I  L  Q  L  R  L  Y  *  I  R  H  R  L  M  N  *  G  M  K  N  Q  I  S  R  I  Q  L  C  Q  L  P  I  E  I  L  S  F  Q  S  L  I  R  L  F  W  M  L  K  P  K  F  V  L  A  P  H  K  P  S  L  S  M  R  N  K  P  S  K  F  W  T  P  F  *  D  Q  :  Q  R  E  S  S  K  M  K  S  Q  Y  Q  K  H  N  L  G  H  F  L  L  Q  *  Q  F  V  Q  M  L  F  Q  S  Q  P  S  G  V  K  G  K  G  V  R  C  I  V  I  G  L  N  *  F  E  C  F  P  K  I  S  Y  L  S  L  I  Q  K  T  Q  *  W  E  L  A  V  Q  *  A  P  N  L  L  E  I  V  L  P  R  *  D  *  L  V  P  S  G  R  F  W  L  G  V  I  L  D  T  R  K  F  K  V  F  *  K  T  S  F  H  *  K  *  K  K  W  D  H  L  M  *  V  S  H  S  F  L  H  L  *  *  D  N  E  *  I  G  R  Q  T  V  S  *  K  P  T  A  L  H  L  M  M  N  L  :  A  L  H  L  L  L  M  *  T  H  *  H  T  T  V  N  L  M  M  V  T   </second_frame>
            <third_frame>   C  K  E  E  R  R  A  G  V  G  T  S  W  R  I  Y  S  G  N  K  R  S  P  S  S  P  S  D  *  F  V  S  S  I  E  V  E  H  I  N  L  T  S  V  I  F  F  *  G  Q  F  R  Y  E  R  F  V  I  S  S  *  L  V  G  I  S  T  T  H  Y  N  K  N  Q  S  F  L  Q  C  S  N  S  N  S  H  Q  T  C  R  K  E  V  L  F  C  N  *  G  C  I  R  F  G  I  D  *  *  T  E  A  *  R  T  R  Y  Q  E  S  S  F  V  N  F  L  S  K  F  *  V  F  K  A  *  S  D  C  F  G  C  S  N  Q  S  L  Y  W  P  H  T  N  Q  A  S  Q  *  G  T  S  P  Q  S  F  G  H  H  F  E  I  S :   K  G  R  A  Q  R  *  R  A  S  I  K  S  T  T  W  G  I  F  Y  C  N  D  N  S  C  K  C  F  S  R  A  N  P  V  E  *  R  G  K  A  C  D  A  S  L  L  A  S  I  N  S  S  A  S  Q  R  Y  H  I  Y  R  *  S  R  R  L  N  N  G  N  W  Q  F  N  R  P  Q  I  C  W  K  *  Y  C  R  D  E  T  S  W  C  P  Q  G  G  F  G  W  G  S  S  W  I  R  G  S  S  R  C  S  K  R  H  P  S  I  E  S  R  R  N  G  I  I  *  C  K  *  V  T  P  F  C  I  Y  D  R  T  T  N  E  S  G  D  R  P  *  V  E  S  L  L  P  C  I  *  *  *  T  W :   P  C  T  Y  C  *  C  K  L  I  D  T  L  R  *  T  L  *  W  *  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0109P04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4913" stop="5294"/>
                    <exon start="5681" stop="6163"/>
                    <exon start="6265" stop="6329"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>930</number_coding_nucleotides>
                  <number_encoded_amino_acids>310</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQLFFFEVNFDMKDLLYPVDSLVSPLHITTKTRVFSNAQIRIPIKRVGKRCYFAIKAVLDSASIDELRHEEPDIKNPALSTSYRNSEFSKPNQTVLDAQTKVCTGPTQTKPLNEEQALKVLDTILRSAKGELKDEEPVSKAQLGAFFTAMTIRANAFPEPTQWSEGERRAMHRYWPQLIRVLPKDIIFIADPEDSIMGIGSSIGPKFVGNSTAEMRLVGALREVLAGGHLGYEEVQGVLKDILPLKVEEMGSSNVSESLLSAFMIGQRMNRETDRELKAYCLAFDDELGPAPIADVNSLTHYGEPYDGNT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6376" PGL_stop="15540"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6376" e_stop="6422"/>
            <exon e_start="6709" e_stop="6792"/>
            <exon e_start="6881" e_stop="6933"/>
            <exon e_start="13336" e_stop="13417"/>
            <exon e_start="13675" e_stop="13782"/>
            <exon e_start="13963" e_stop="14086"/>
            <exon e_start="14170" e_stop="14255"/>
            <exon e_start="14977" e_stop="15211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.919" acc_prob="0.986" e_score="0.957"/>
          <exon-intron don_prob="0.994" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.631" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="6376" e_stop="6422" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.919" acc_prob="0.986">
            <gDNA_intron_boundary i_start="6423" i_stop="6708" i_length="286"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6709" e_stop="6792" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.988">
            <gDNA_intron_boundary i_start="6793" i_stop="6880" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6881" e_stop="6933" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.998">
            <gDNA_intron_boundary i_start="6934" i_stop="13335" i_length="6402"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13336" e_stop="13417" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.923" acc_prob="0.989">
            <gDNA_intron_boundary i_start="13418" i_stop="13674" i_length="257"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13675" e_stop="13782" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.631" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13783" i_stop="13962" i_length="180"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13963" e_stop="14086" e_length="124"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="14087" i_stop="14169" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14170" e_stop="14255" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14256" i_stop="14976" i_length="721"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="14977" e_stop="15211" e_length="235"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6376" stop="6422"/>
              <exon start="6709" stop="6792"/>
              <exon start="6881" stop="6933"/>
              <exon start="13336" stop="13417"/>
              <exon start="13675" stop="13782"/>
              <exon start="13963" stop="14086"/>
              <exon start="14170" stop="14255"/>
              <exon start="14977" stop="15211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13336" stop="13417"/>
              <exon start="13675" stop="13782"/>
              <exon start="13963" stop="14086"/>
              <exon start="14170" stop="14255"/>
              <exon start="14977" stop="15196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323297" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGTGAATCTTGCCTGCTTCATGGTGTGGATTGGATGCCACCAAAG : GGAGGCATTACTGAAGAACAAATGCTGATGTTTATGGGGGCAAACACACACTTAACCCCCTCTCAAGCTAAAATGCTTCTTGAG : GATGATGAAGTTGGTTTTGCTTATGTAAGTCAGCGTGAAGCTCGCCCATCTTT : ATATTCATTGATTGGGTTAAGGGAACATATAAAGAAACGTCCACCACTGGCAACAACTGAGAAAGTTCAACAAATTGTGCGG : GCTCGGGGAAAGGAAGCAATTGTTGCTGGTTTCTATCATGGAGGCTATGAAGAACCATTGTTAATGCTTATGAGAAGAAGGGGTGTGCATGCTGGTTTGGTTGTCAAG : GGCGAGGAAGGTGCACTTTCAATGACGACAAGGTTGCGGTCAGCAAATGCATCAAAAGGACTTCCTGTAAATTATTGCTCAGGGTTTCGCTCAGTGAATTTGGCACCTGCTTGTGCAGTTGATG : GTGTATCACGTGAGAGTTTCAATATTGAGGTGAATGCTAGTGATTATGGCTTTGCATCCACAGATACTCCAAGAACAGATAGATCT : GTTGCAAGGAATATAGAGTTGGGTTTAGCAGCTTTACGTGGTGAGAAAGGTCCAGCCTACGATAGAATTGTTTTAAATGCTGGAATGGTTGACCATTTGCTTGGGTCTGATGGAGCTCAAGACATAAGTGCAGCCTTTGATAGAGCCAGAGAAGCCATTGACAGTGGGAAGGCCCTCAGAGGACTCCTAAATTACATTAAGATATCTAACAAAGTAATATCATAATTAGAGGCCT</gDNA_template>
            <first_frame> M  V  N  L  A  C  F  M  V  W  I  G  C  H  Q  R :   E  A  L  L  K  N  K  C  *  C  L  W  G  Q  T  H  T  *  P  P  L  K  L  K  C  F  L  R :   M  M  K  L  V  L  L  M  *  V  S  V  K  L  A  H  L   : Y  I  H  *  L  G  *  G  N  I  *  R  N  V  H  H  W  Q  Q  L  R  K  F  N  K  L  C  G :   L  G  E  R  K  Q  L  L  L  V  S  I  M  E  A  M  K  N  H  C  *  C  L  *  E  E  G  V  C  M  L  V  W  L  S  R :   A  R  K  V  H  F  Q  *  R  Q  G  C  G  Q  Q  M  H  Q  K  D  F  L  *  I  I  A  Q  G  F  A  Q  *  I  W  H  L  L  V  Q  L  M  :  V  Y  H  V  R  V  S  I  L  R  *  M  L  V  I  M  A  L  H  P  Q  I  L  Q  E  Q  I  D  L :   L  Q  G  I  *  S  W  V  *  Q  L  Y  V  V  R  K  V  Q  P  T  I  E  L  F  *  M  L  E  W  L  T  I  C  L  G  L  M  E  L  K  T  *  V  Q  P  L  I  E  P  E  K  P  L  T  V  G  R  P  S  E  D  S  *  I  T  L  R  Y  L  T  K  *  Y  H  N  *  R  P </first_frame>
            <second_frame>  W  *  I  L  P  A  S  W  C  G  L  D  A  T  K   : G  R  H  Y  *  R  T  N  A  D  V  Y  G  G  K  H  T  L  N  P  L  S  S  *  N  A  S  *   : G  *  *  S  W  F  C  L  C  K  S  A  *  S  S  P  I  F  :  I  F  I  D  W  V  K  G  T  Y  K  E  T  S  T  T  G  N  N  *  E  S  S  T  N  C  A   : G  S  G  K  G  S  N  C  C  W  F  L  S  W  R  L  *  R  T  I  V  N  A  Y  E  K  K  G  C  A  C  W  F  G  C  Q   : G  R  G  R  C  T  F  N  D  D  K  V  A  V  S  K  C  I  K  R  T  S  C  K  L  L  L  R  V  S  L  S  E  F  G  T  C  L  C  S  *  W :   C  I  T  *  E  F  Q  Y  *  G  E  C  *  *  L  W  L  C  I  H  R  Y  S  K  N  R  *  I   : C  C  K  E  Y  R  V  G  F  S  S  F  T  W  *  E  R  S  S  L  R  *  N  C  F  K  C  W  N  G  *  P  F  A  W  V  *  W  S  S  R  H  K  C  S  L  *  *  S  Q  R  S  H  *  Q  W  E  G  P  Q  R  T  P  K  L  H  *  D  I  *  Q  S  N  I  I  I  R  G   </second_frame>
            <third_frame>   G  E  S  C  L  L  H  G  V  D  W  M  P  P  K  :  G  G  I  T  E  E  Q  M  L  M  F  M  G  A  N  T  H  L  T  P  S  Q  A  K  M  L  L  E  :  D  D  E  V  G  F  A  Y  V  S  Q  R  E  A  R  P  S  L :   Y  S  L  I  G  L  R  E  H  I  K  K  R  P  P  L  A  T  T  E  K  V  Q  Q  I  V  R  :  A  R  G  K  E  A  I  V  A  G  F  Y  H  G  G  Y  E  E  P  L  L  M  L  M  R  R  R  G  V  H  A  G  L  V  V  K  :  G  E  E  G  A  L  S  M  T  T  R  L  R  S  A  N  A  S  K  G  L  P  V  N  Y  C  S  G  F  R  S  V  N  L  A  P  A  C  A  V  D   : G  V  S  R  E  S  F  N  I  E  V  N  A  S  D  Y  G  F  A  S  T  D  T  P  R  T  D  R  S  :  V  A  R  N  I  E  L  G  L  A  A  L  R  G  E  K  G  P  A  Y  D  R  I  V  L  N  A  G  M  V  D  H  L  L  G  S  D  G  A  Q  D  I  S  A  A  F  D  R  A  R  E  A  I  D  S  G  K  A  L  R  G  L  L  N  Y  I  K  I  S  N  K  V  I  S  *  L  E  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0109P04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6378" stop="6422"/>
                    <exon start="6709" stop="6792"/>
                    <exon start="6881" stop="6933"/>
                    <exon start="13336" stop="13417"/>
                    <exon start="13675" stop="13782"/>
                    <exon start="13963" stop="14086"/>
                    <exon start="14170" stop="14255"/>
                    <exon start="14977" stop="15201"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GESCLLHGVDWMPPKGGITEEQMLMFMGANTHLTPSQAKMLLEDDEVGFAYVSQREARPSLYSLIGLREHIKKRPPLATTEKVQQIVRARGKEAIVAGFYHGGYEEPLLMLMRRRGVHAGLVVKGEEGALSMTTRLRSANASKGLPVNYCSGFRSVNLAPACAVDGVSRESFNIEVNASDYGFASTDTPRTDRSVARNIELGLAALRGEKGPAYDRIVLNAGMVDHLLGSDGAQDISAAFDRAREAIDSGKALRGLLNYIKISNKVIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11253" e_stop="11729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="11253" e_stop="11729" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11253" stop="11728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11343" stop="11729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220040" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTGAAAGTTTCAAAGTACCCAAAAAATTTATCCATGATAAGATCAAATCATTTTATGAATTAACTTCAAATGGTTCATCAAAATAGAAAAAGTTAAAAGCTTTAAGAAGTAGAAAATTAGTATTTCAAAAATCGAATATGAATTTTTTTTTTACTTAAATAGAGAGAGGGGTTAAAATAGACCAATGAATATTTAAAGGATTCGGCAAACTTTCCGACAATGGAACTATGGAAAAAATTAGATGGAGAAATTTGATATCATGAAGAAGATATATGCTCTAGACATATTTTCGTCCTTTCTTAAATTATGTTTGTTGATTTATATTATTAATTTAATTTTCCACAATAAGAAAGGACAGAGAGGAGAAAGTTGAATATAAAATTGTGGCAAGGTGGTGGTAAATGGTGGAGGAAGTGTGGGAAGGAGAGAGAAGGAAGAAGAAGAAGAAGAAATTAAAATAAATTAAAAAAATCA</gDNA_template>
            <first_frame> V  L  K  V  S  K  Y  P  K  N  L  S  M  I  R  S  N  H  F  M  N  *  L  Q  M  V  H  Q  N  R  K  S  *  K  L  *  E  V  E  N  *  Y  F  K  N  R  I  *  I  F  F  L  L  K  *  R  E  G  L  K  *  T  N  E  Y  L  K  D  S  A  N  F  P  T  M  E  L  W  K  K  L  D  G  E  I  *  Y  H  E  E  D  I  C  S  R  H  I  F  V  L  S  *  I  M  F  V  D  L  Y  Y  *  F  N  F  P  Q  *  E  R  T  E  R  R  K  L  N  I  K  L  W  Q  G  G  G  K  W  W  R  K  C  G  K  E  R  E  G  R  R  R  R  R  N  *  N  K  L  K  K  S </first_frame>
            <second_frame>  F  *  K  F  Q  S  T  Q  K  I  Y  P  *  *  D  Q  I  I  L  *  I  N  F  K  W  F  I  K  I  E  K  V  K  S  F  K  K  *  K  I  S  I  S  K  I  E  Y  E  F  F  F  Y  L  N  R  E  R  G  *  N  R  P  M  N  I  *  R  I  R  Q  T  F  R  Q  W  N  Y  G  K  N  *  M  E  K  F  D  I  M  K  K  I  Y  A  L  D  I  F  S  S  F  L  K  L  C  L  L  I  Y  I  I  N  L  I  F  H  N  K  K  G  Q  R  G  E  S  *  I  *  N  C  G  K  V  V  V  N  G  G  G  S  V  G  R  R  E  K  E  E  E  E  E  E  I  K  I  N  *  K  N   </second_frame>
            <third_frame>   F  E  S  F  K  V  P  K  K  F  I  H  D  K  I  K  S  F  Y  E  L  T  S  N  G  S  S  K  *  K  K  L  K  A  L  R  S  R  K  L  V  F  Q  K  S  N  M  N  F  F  F  T  *  I  E  R  G  V  K  I  D  Q  *  I  F  K  G  F  G  K  L  S  D  N  G  T  M  E  K  I  R  W  R  N  L  I  S  *  R  R  Y  M  L  *  T  Y  F  R  P  F  L  N  Y  V  C  *  F  I  L  L  I  *  F  S  T  I  R  K  D  R  E  E  K  V  E  Y  K  I  V  A  R  W  W  *  M  V  E  E  V  W  E  G  E  R  R  K  K  K  K  K  K  L  K  *  I  K  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0109P04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="14974" e_stop="15304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="14974" e_stop="15304" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14974" stop="15304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGTTGCAAGGAATATAGAGTTGGGTTTAGCAGCTTTACGTGGTGAGAAAGGTCCAGCCTACGATAGAATTGTTTTAAATGCTGGAATGGTTGACCATTTGCTTGGGTCTGATGGAGCTCAAGACATAAGTGCAGCCTTTGATAGAGCCAGAGAAGCCATTGACAGTGGGAAGGCCCTCAGAGGACTCCTAAATTACATTAAGATATCTAACAAAGTAATATCATAATTAGAGGCCTGTAGGATTTTTTCCTTCCTCCTTTGGTCATTTTAATCCCAGCAAACAAGTGCAATAGTCTACGGATAATGAAATTGAGAACCTTTCTTCCATC</gDNA_template>
            <first_frame> *  V  A  R  N  I  E  L  G  L  A  A  L  R  G  E  K  G  P  A  Y  D  R  I  V  L  N  A  G  M  V  D  H  L  L  G  S  D  G  A  Q  D  I  S  A  A  F  D  R  A  R  E  A  I  D  S  G  K  A  L  R  G  L  L  N  Y  I  K  I  S  N  K  V  I  S  *  L  E  A  C  R  I  F  S  F  L  L  W  S  F  *  S  Q  Q  T  S  A  I  V  Y  G  *  *  N  *  E  P  F  F  H  </first_frame>
            <second_frame>  R  L  Q  G  I  *  S  W  V  *  Q  L  Y  V  V  R  K  V  Q  P  T  I  E  L  F  *  M  L  E  W  L  T  I  C  L  G  L  M  E  L  K  T  *  V  Q  P  L  I  E  P  E  K  P  L  T  V  G  R  P  S  E  D  S  *  I  T  L  R  Y  L  T  K  *  Y  H  N  *  R  P  V  G  F  F  P  S  S  F  G  H  F  N  P  S  K  Q  V  Q  *  S  T  D  N  E  I  E  N  L  S  S  I </second_frame>
            <third_frame>   G  C  K  E  Y  R  V  G  F  S  S  F  T  W  *  E  R  S  S  L  R  *  N  C  F  K  C  W  N  G  *  P  F  A  W  V  *  W  S  S  R  H  K  C  S  L  *  *  S  Q  R  S  H  *  Q  W  E  G  P  Q  R  T  P  K  L  H  *  D  I  *  Q  S  N  I  I  I  R  G  L  *  D  F  F  L  P  P  L  V  I  L  I  P  A  N  K  C  N  S  L  R  I  M  K  L  R  T  F  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0109P04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14977" stop="15201"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VARNIELGLAALRGEKGPAYDRIVLNAGMVDHLLGSDGAQDISAAFDRAREAIDSGKALRGLLNYIKISNKVIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="14166" e_stop="14255"/>
            <exon e_start="14977" e_stop="15540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="0.978"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="14166" e_stop="14255" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14256" i_stop="14976" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14977" e_stop="15540" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14166" stop="14255"/>
              <exon start="14977" stop="15540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376481" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGGTGTATCACGTGAGAGTTTCAATATTGAGGTGAATGCTAGTGATTATGGCTTTGCATCCACAGATACTCCAAGAACAGATAGATCT : GTTGCAAGGAATATAGAGTTGGGTTTAGCAGCTTTACGTGGTGAGAAAGGTCCAGCCTACGATAGAATTGTTTTAAATGCTGGAATGGTTGACCATTTGCTTGGGTCTGATGGAGCTCAAGACATAAGTGCAGCCTTTGATAGAGCCAGAGAAGCCATTGACAGTGGGAAGGCCCTCAGAGGACTCCTAAATTACATTAAGATATCTAACAAAGTAATATCATAATTAGAGGCCTGTAGGATTTTTTCCTTCCTCCTTTGGTCATTTTAATCCCAGCAAACAAGTGCAATAGTCTACGGATAATGAAATTGAGAACCTTTCTTCCATCTTATAAAGCTGCTGTACATGAACACGAAGATTCACTGTTCCAGTTTTGCTTAAGCAAGCCTTTGTTGTCACCACTAGTTCACTGCTACTCCGATATGTTGATACCACACACACAGTAAGGATTTAGTGTTTCTGATTGAAGTGCAACTTATGTGTGTTAAATAAATGTCTACAATGTTTCTCAGTTGATACTCGTTTGAATAGTTGTTGATCTGATGTCACTTGTCTTAGATTAGA</gDNA_template>
            <first_frame> A  G  V  S  R  E  S  F  N  I  E  V  N  A  S  D  Y  G  F  A  S  T  D  T  P  R  T  D  R  S  :  V  A  R  N  I  E  L  G  L  A  A  L  R  G  E  K  G  P  A  Y  D  R  I  V  L  N  A  G  M  V  D  H  L  L  G  S  D  G  A  Q  D  I  S  A  A  F  D  R  A  R  E  A  I  D  S  G  K  A  L  R  G  L  L  N  Y  I  K  I  S  N  K  V  I  S  *  L  E  A  C  R  I  F  S  F  L  L  W  S  F  *  S  Q  Q  T  S  A  I  V  Y  G  *  *  N  *  E  P  F  F  H  L  I  K  L  L  Y  M  N  T  K  I  H  C  S  S  F  A  *  A  S  L  C  C  H  H  *  F  T  A  T  P  I  C  *  Y  H  T  H  S  K  D  L  V  F  L  I  E  V  Q  L  M  C  V  K  *  M  S  T  M  F  L  S  *  Y  S  F  E  *  L  L  I  *  C  H  L  S  *  I  R </first_frame>
            <second_frame>  Q  V  Y  H  V  R  V  S  I  L  R  *  M  L  V  I  M  A  L  H  P  Q  I  L  Q  E  Q  I  D  L :   L  Q  G  I  *  S  W  V  *  Q  L  Y  V  V  R  K  V  Q  P  T  I  E  L  F  *  M  L  E  W  L  T  I  C  L  G  L  M  E  L  K  T  *  V  Q  P  L  I  E  P  E  K  P  L  T  V  G  R  P  S  E  D  S  *  I  T  L  R  Y  L  T  K  *  Y  H  N  *  R  P  V  G  F  F  P  S  S  F  G  H  F  N  P  S  K  Q  V  Q  *  S  T  D  N  E  I  E  N  L  S  S  I  L  *  S  C  C  T  *  T  R  R  F  T  V  P  V  L  L  K  Q  A  F  V  V  T  T  S  S  L  L  L  R  Y  V  D  T  T  H  T  V  R  I  *  C  F  *  L  K  C  N  L  C  V  L  N  K  C  L  Q  C  F  S  V  D  T  R  L  N  S  C  *  S  D  V  T  C  L  R  L   </second_frame>
            <third_frame>   R  C  I  T  *  E  F  Q  Y  *  G  E  C  *  *  L  W  L  C  I  H  R  Y  S  K  N  R  *  I   : C  C  K  E  Y  R  V  G  F  S  S  F  T  W  *  E  R  S  S  L  R  *  N  C  F  K  C  W  N  G  *  P  F  A  W  V  *  W  S  S  R  H  K  C  S  L  *  *  S  Q  R  S  H  *  Q  W  E  G  P  Q  R  T  P  K  L  H  *  D  I  *  Q  S  N  I  I  I  R  G  L  *  D  F  F  L  P  P  L  V  I  L  I  P  A  N  K  C  N  S  L  R  I  M  K  L  R  T  F  L  P  S  Y  K  A  A  V  H  E  H  E  D  S  L  F  Q  F  C  L  S  K  P  L  L  S  P  L  V  H  C  Y  S  D  M  L  I  P  H  T  Q  *  G  F  S  V  S  D  *  S  A  T  Y  V  C  *  I  N  V  Y  N  V  S  Q  L  I  L  V  *  I  V  V  D  L  M  S  L  V  L  D  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0109P04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14166" stop="14255"/>
                    <exon start="14977" stop="15201"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGVSRESFNIEVNASDYGFASTDTPRTDRSVARNIELGLAALRGEKGPAYDRIVLNAGMVDHLLGSDGAQDISAAFDRAREAIDSGKALRGLLNYIKISNKVIS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0109P04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15216" stop="15422"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFFLPPLVILIPANKCNSLRIMKLRTFLPSYKAAVHEHEDSLFQFCLSKPLLSPLVHCYSDMLIPHTQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="17154" PGL_stop="17813"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17154" e_stop="17417"/>
            <exon e_start="17528" e_stop="17813"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.886"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.886">
            <gDNA_exon_boundary e_start="17154" e_stop="17417" e_length="264"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17418" i_stop="17527" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="0.941">
            <gDNA_exon_boundary e_start="17528" e_stop="17813" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17154" stop="17417"/>
              <exon start="17528" stop="17813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17154" stop="17417"/>
              <exon start="17528" stop="17813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689001" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAAGATGTGTTTTTTATGAAGAAGGAAGATCAGAAAATTTATTTTTTTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATGTATTCTGAAAGGTTGCTACCCTTTTAGAATTGACACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAATTGCAACTTTTCAGAACAGTCATGGCGGGAAATTTGA : AAATTATCTCTCGATCGATCATTTGCCAAAGCCCAAGCCCAAGCCCAAGCGAGCGAGCGACGACGACGGCGCGAGGGGGGTCCCTCTTTCCAACCCTTTTAACAATTAATAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCATTACCGATGAGGGACTATTGCCTTTTTCAATAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTTTCCTTCCATCTATTTCCCATCAATTCTTGCTACATACCCAACA</gDNA_template>
            <first_frame> K  L  Y  C  Q  R  I  N  P  Q  Q  E  S  T  R  R  K  M  C  F  L  *  R  R  K  I  R  K  F  I  F  L  N  I  L  K  T  E  W  Y  L  *  A  R  I  M  Y  S  E  R  L  L  P  F  *  N  *  H  D  H  *  *  K  V  A  N  F  Q  M  V  L  T  V  P  E  N  C  N  F  S  E  Q  S  W  R  E  I  *  :  K  L  S  L  D  R  S  F  A  K  A  Q  A  Q  A  Q  A  S  E  R  R  R  R  R  E  G  G  P  S  F  Q  P  F  *  Q  L  I  G  V  F  I  Y  L  N  S  P  I  F  I  S  I  T  D  E  G  L  L  P  F  S  I  K  H  *  R  T  F  Q  V  P  N  L  S  S  S  K  L  F  K  F  L  S  F  H  L  F  P  I  N  S  C  Y  I  P  N  </first_frame>
            <second_frame>  N  S  T  V  S  E  S  I  H  S  R  K  V  H  E  E  R  C  V  F  Y  E  E  G  R  S  E  N  L  F  F  *  I  F  *  R  L  N  G  I  Y  R  Q  E  *  C  I  L  K  G  C  Y  P  F  R  I  D  T  T  I  N  E  R  L  Q  T  F  K  W  Y  *  L  F  L  K  I  A  T  F  Q  N  S  H  G  G  K  F  E :   N  Y  L  S  I  D  H  L  P  K  P  K  P  K  P  K  R  A  S  D  D  D  G  A  R  G  V  P  L  S  N  P  F  N  N  *  *  E  C  L  F  I  *  T  L  L  F  S  F  P  L  P  M  R  D  Y  C  L  F  Q  *  S  I  R  G  L  F  K  F  P  T  F  Q  V  L  N  F  S  N  S  F  P  S  I  Y  F  P  S  I  L  A  T  Y  P  T </second_frame>
            <third_frame>   T  L  L  S  A  N  Q  S  T  A  G  K  Y  T  K  K  D  V  F  F  M  K  K  E  D  Q  K  I  Y  F  F  K  Y  S  E  D  *  M  V  F  I  G  K  N  N  V  F  *  K  V  A  T  L  L  E  L  T  R  P  L  M  K  G  C  K  L  S  N  G  I  D  C  S  *  K  L  Q  L  F  R  T  V  M  A  G  N  L   : K  I  I  S  R  S  I  I  C  Q  S  P  S  P  S  P  S  E  R  A  T  T  T  A  R  G  G  S  L  F  P  T  L  L  T  I  N  R  S  V  Y  L  F  K  L  S  Y  F  H  F  H  Y  R  *  G  T  I  A  F  F  N  K  A  L  E  D  F  S  S  S  Q  P  F  K  F  *  T  F  Q  I  P  F  L  P  S  I  S  H  Q  F  L  L  H  T  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0109P04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17378" stop="17417"/>
                    <exon start="17528" stop="17688"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLQLFRTVMAGNLKIISRSIICQSPSPSPSERATTTARGGSLFPTLLTINRSVYLFKLSYFHFHYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="21910" PGL_stop="21516"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21910" e_stop="21516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="21910" e_stop="21516" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21910" stop="21516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21906" stop="21544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAGTAAAACTGTTGGATCACAAGTACAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGTTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTCGTGGAATGATTTAAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAGAAACACCGAAAAGAAGTCACGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTTAGAACAGGCCAAGAAGAAATTCAAAGTCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</gDNA_template>
            <first_frame> D  S  K  T  V  G  S  Q  V  Q  E  L  Q  L  I  L  H  D  L  I  A  E  D  M  V  V  N  E  V  F  Q  V  A  A  M  I  E  K  L  P  P  S  W  N  D  L  K  N  Y  L  K  H  K  R  K  E  M  K  L  E  D  L  V  I  R  L  K  I  E  E  D  N  R  N  T  E  K  K  S  R  K  S  S  T  I  I  G  V  N  I  V  E  E  A  P  T  K  D  K  K  R  K  K  S  N  G  Q  K  L  E  Q  A  K  K  K  F  K  V  N  C  Y  N  C  G  K  A  G  H  R  S  S   </first_frame>
            <second_frame>  I  V  K  L  L  D  H  K  Y  R  N  F  N  L  F  S  M  I  *  L  L  K  I  W  *  *  M  K  F  F  K  W  L  Q  *  S  R  S  C  L  L  R  G  M  I  *  R  I  I  *  S  T  S  V  K  K  *  S  L  K  I  L  *  F  V  S  R  L  R  K  I  T  E  T  P  K  R  S  H  V  R  V  Q  Q  S  L  E  L  I  L  L  K  K  L  L  P  K  T  K  R  E  R  S  P  T  G  R  S  *  N  R  P  R  R  N  S  K  S  T  V  I  I  V  A  R  L  V  I  D  L  L  </second_frame>
            <third_frame>   *  *  N  C  W  I  T  S  T  G  T  S  T  Y  S  P  *  S  D  C  *  R  Y  G  S  K  *  S  F  S  S  G  C  N  D  R  E  V  A  S  F  V  E  *  F  K  E  L  S  K  A  Q  A  *  R  N  E  A  *  R  S  C  D  S  S  Q  D  *  G  R  *  Q  K  H  R  K  E  V  T  *  E  F  N  N  H  W  S  *  Y  C  *  R  S  S  Y  Q  R  Q  K  E  K  E  V  Q  R  A  E  V  R  T  G  Q  E  E  I  Q  S  Q  L  L  *  L  W  Q  G  W  S  *  I  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0109P04.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21910" stop="21518"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSKTVGSQVQELQLILHDLIAEDMVVNEVFQVAAMIEKLPPSWNDLKNYLKHKRKEMKLEDLVIRLKIEEDNRNTEKKSRKSSTIIGVNIVEEAPTKDKKRKKSNGQKLEQAKKKFKVNCYNCGKAGHRSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="22358" PGL_stop="23196"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22358" e_stop="23196"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="22358" e_stop="23196" e_length="839"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22358" stop="23196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22358" stop="22932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22359" stop="22766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATAATTGCAGACTTAAAGAAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTTATATAATTTCCTTAAGATTGTTGCCAATCCGTGTTATGAAAATCTGAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGCAAAAAATAATTAAATTTGGAAAACTTACCAGAATCTAGAATACTATTATTGATAATTTAGGAAGAAAATCCAGTCCACTGAATTCACAGTGTCTCCTTAATGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTATAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAAGATGTGTTTTTTTATGAAGAAGGAAGATCAGAAAATTTATTTTTTTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAAAATAATATATTCTGAAAGGTTGCTACCTTTCAGAATTGACACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCGTGAAAGTTGCAACCTTTCAGAACAGTCATGGCGGTAAATTTGAATATTACAGAATATAAAACGGGTCACTCGCGCGGATCCGAGTCGGGTCGGGTTAACTATAAAGTTGAAAACATTTCGGTTAAATTTTGTTATCAACTAATTTATTGAAAATAATTTTTTGCCATTTAAATTAATTAATAAATAATTAAAATAAATTTTGTCCAAAAAAATTATCTCTCGATCA</gDNA_template>
            <first_frame> I  I  I  A  D  L  K  K  Y  K  I  T  K  I  F  V  S  T  R  N  T  D  L  Y  N  F  L  K  I  V  A  N  P  C  Y  E  N  L  K  L  L  V  V  I  N  H  S  E  T  R  S  N  *  D  F  *  N  Q  *  I  R  *  T  E  I  Y  L  Q  K  I  I  K  F  G  K  L  T  R  I  *  N  T  I  I  D  N  L  G  R  K  S  S  P  L  N  S  Q  C  L  L  N  E  I  I  P  L  *  Y  P  R  F  D  L  E  Y  N  L  P  G  *  N  D  L  N  Q  Y  S  I  D  T  K  N  S  T  V  S  E  S  I  H  S  R  K  V  H  E  E  R  C  V  F  L  *  R  R  K  I  R  K  F  I  F  L  N  I  L  K  T  E  W  Y  L  *  A  K  I  I  Y  S  E  R  L  L  P  F  R  I  D  T  T  I  N  E  R  L  Q  T  F  K  W  Y  *  L  F  V  K  V  A  T  F  Q  N  S  H  G  G  K  F  E  Y  Y  R  I  *  N  G  S  L  A  R  I  R  V  G  S  G  *  L  *  S  *  K  H  F  G  *  I  L  L  S  T  N  L  L  K  I  I  F  C  H  L  N  *  L  I  N  N  *  N  K  F  C  P  K  K  L  S  L  D   </first_frame>
            <second_frame>  L  *  L  Q  T  *  R  S  I  K  S  Q  R  F  L  S  P  P  E  T  Q  I  Y  I  I  S  L  R  L  L  P  I  R  V  M  K  I  *  N  Y  W  L  *  *  I  I  Q  K  H  E  V  T  E  I  F  R  T  S  K  *  D  E  Q  K  F  I  C  K  K  *  L  N  L  E  N  L  P  E  S  R  I  L  L  L  I  I  *  E  E  N  P  V  H  *  I  H  S  V  S  L  M  K  L  F  P  S  S  I  R  G  L  I  W  N  I  T  S  Q  G  K  M  I  L  I  S  I  V  *  I  P  K  T  L  L  S  A  N  Q  S  T  A  G  K  Y  T  K  K  D  V  F  F  Y  E  E  G  R  S  E  N  L  F  F  *  I  F  *  R  L  N  G  I  Y  R  Q  K  *  Y  I  L  K  G  C  Y  L  S  E  L  T  R  P  L  M  K  G  C  K  L  S  N  G  I  D  C  S  *  K  L  Q  P  F  R  T  V  M  A  V  N  L  N  I  T  E  Y  K  T  G  H  S  R  G  S  E  S  G  R  V  N  Y  K  V  E  N  I  S  V  K  F  C  Y  Q  L  I  Y  *  K  *  F  F  A  I  *  I  N  *  *  I  I  K  I  N  F  V  Q  K  N  Y  L  S  I  </second_frame>
            <third_frame>   Y  N  C  R  L  K  E  V  *  N  H  K  D  F  C  L  H  Q  K  H  R  F  I  *  F  P  *  D  C  C  Q  S  V  L  *  K  S  E  I  T  G  C  N  K  S  F  R  N  T  K  *  L  R  F  L  E  P  V  N  K  M  N  R  N  L  F  A  K  N  N  *  I  W  K  T  Y  Q  N  L  E  Y  Y  Y  *  *  F  R  K  K  I  Q  S  T  E  F  T  V  S  P  *  *  N  Y  S  P  L  V  S  E  V  *  F  G  I  *  P  P  R  V  K  *  S  *  S  V  *  Y  R  Y  Q  K  L  Y  C  Q  R  I  N  P  Q  Q  E  S  T  R  R  K  M  C  F  F  M  K  K  E  D  Q  K  I  Y  F  F  K  Y  S  E  D  *  M  V  F  I  G  K  N  N  I  F  *  K  V  A  T  F  Q  N  *  H  D  H  *  *  K  V  A  N  F  Q  M  V  L  T  V  R  E  S  C  N  L  S  E  Q  S  W  R  *  I  *  I  L  Q  N  I  K  R  V  T  R  A  D  P  S  R  V  G  L  T  I  K  L  K  T  F  R  L  N  F  V  I  N  *  F  I  E  N  N  F  L  P  F  K  L  I  N  K  *  L  K  *  I  L  S  K  K  I  I  S  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0109P04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="35586" PGL_stop="35204"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35586" e_stop="35204"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="35586" e_stop="35204" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35586" stop="35204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCGTTTCAAAACACTTCAACTCTTGGAATATGGTTACTGGGATTACTTCTTTGATCTTCATGACGAACCTGCAGGACGGACCGTCATAGCCACGACGGACCGTCCCAAGCAACGTAACCCTACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCACTATGCTGCCACCTACGGACCGTCACAAGCACGATGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCTGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAAGGCTTCTAGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAGCCACGGTATATCA</gDNA_template>
            <first_frame> F  V  S  K  H  F  N  S  W  N  M  V  T  G  I  T  S  L  I  F  M  T  N  L  Q  D  G  P  S  *  P  R  R  T  V  P  S  N  V  T  L  H  L  V  R  L  P  H  L  P  S  A  A  S  L  C  C  H  L  R  T  V  T  S  T  M  D  R  H  K  L  R  R  W  S  L  L  H  F  F  A  Q  N  L  R  I  L  L  W  T  D  F  L  Q  N  K  E  K  L  I  *  K  L  A  Q  K  R  L  L  D  T  L  N  L  R  K  K  Y  *  L  Y  R  E  A  T  V  Y   </first_frame>
            <second_frame>  S  F  Q  N  T  S  T  L  G  I  W  L  L  G  L  L  L  *  S  S  *  R  T  C  R  T  D  R  H  S  H  D  G  P  S  Q  A  T  *  P  Y  T  W  S  D  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  P  S  Q  A  R  W  T  V  I  S  S  V  G  G  L  F  C  I  S  S  L  K  I  S  A  F  C  F  G  Q  I  S  C  K  T  K  R  N  L  Y  K  N  *  H  K  K  G  F  *  T  H  *  T  *  G  K  S  I  N  Y  T  V  K  P  R  Y  I  </second_frame>
            <third_frame>   R  F  K  T  L  Q  L  L  E  Y  G  Y  W  D  Y  F  F  D  L  H  D  E  P  A  G  R  T  V  I  A  T  T  D  R  P  K  Q  R  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  F  T  M  L  P  P  T  D  R  H  K  H  D  G  P  S  *  A  P  *  V  V  S  S  A  F  L  R  S  K  S  P  H  S  A  L  D  R  F  P  A  K  Q  R  E  T  Y  I  K  I  S  T  K  K  A  S  R  H  T  K  L  K  E  K  V  L  I  I  P  *  S  H  G  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0109P04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35496" stop="35284"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRRTVPSNVTLHLVRLPHLPSAASLCCHLRTVTSTMDRHKLRRWSLLHFFAQNLRILLWTDFLQNKEKLI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0109P04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35584" stop="35378"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFKTLQLLEYGYWDYFFDLHDEPAGRTVIATTDRPKQRNPTLGQTSPSSFSSFTMLPPTDRHKHDGPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="40096" PGL_stop="39381"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40096" e_stop="39381"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="40096" e_stop="39381" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40096" stop="39381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGGGTCTTCGTTTCAAAAAACTTCAACTCTTGGAATCTGGTACTTGGATTACTTCTCTGATCTTCATGACGAACCTGCAAGACGAACCGTCATAGCCACGACGGACCGTCACAAGCTACGTAACCCCACACTTGGTCAGACATCCCCATCTTCCTTCAGCAGCTTCACTACGCTGCCACTTACGGACCGTCAGAAGTACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTGTTCGCTCAAAATCTCTGCATTTAGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTATACACACTAAACTTAAGGAAAAAGTATTAATTATAGCGTGAAACCACGGTATATCAACACCCTAAACTTAAATTCGTTGTTTGTCCTCAAGCAACGCACTATGACTCACTACACAATCTTTGTACAATAGCATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATAAAATTTTTACATGCTATCCCGATTAGGCTTGAATTTTGTGGGATTAGAACGTGACAAAGACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCACTGAGGTGCTAACAATTCCGGTACTGCAACTAGTGTCCTCACTTTAAAACAAAATCCTCATTTTTCACACAATGATTTTAGTTTGAGTATAAGGATTAT</gDNA_template>
            <first_frame> R  G  S  S  F  Q  K  T  S  T  L  G  I  W  Y  L  D  Y  F  S  D  L  H  D  E  P  A  R  R  T  V  I  A  T  T  D  R  H  K  L  R  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  F  T  T  L  P  L  T  D  R  Q  K  Y  D  G  P  S  *  A  P  *  V  V  S  S  A  F  C  S  L  K  I  S  A  F  S  F  G  Q  I  S  C  K  T  K  R  N  L  Y  K  N  *  H  K  K  A  F  I  H  T  K  L  K  E  K  V  L  I  I  A  *  N  H  G  I  S  T  P  *  T  *  I  R  C  L  S  S  S  N  A  L  *  L  T  T  Q  S  L  Y  N  S  I  H  V  L  S  F  A  I  I  W  L  S  I  P  I  N  L  I  K  F  L  H  A  I  P  I  R  L  E  F  C  G  I  R  T  *  Q  R  L  T  M  H  *  H  L  S  S  S  I  S  H  *  G  A  N  N  S  G  T  A  T  S  V  L  T  L  K  Q  N  P  H  F  S  H  N  D  F  S  L  S  I  R  I   </first_frame>
            <second_frame>  E  G  L  R  F  K  K  L  Q  L  L  E  S  G  T  W  I  T  S  L  I  F  M  T  N  L  Q  D  E  P  S  *  P  R  R  T  V  T  S  Y  V  T  P  H  L  V  R  H  P  H  L  P  S  A  A  S  L  R  C  H  L  R  T  V  R  S  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  V  R  S  K  S  L  H  L  A  L  D  R  F  P  A  K  Q  R  E  T  Y  I  K  I  S  T  K  R  L  L  Y  T  L  N  L  R  K  K  Y  *  L  *  R  E  T  T  V  Y  Q  H  P  K  L  K  F  V  V  C  P  Q  A  T  H  Y  D  S  L  H  N  L  C  T  I  A  S  M  F  Y  P  L  Q  S  F  G  Y  Q  S  R  L  I  S  *  N  F  Y  M  L  S  R  L  G  L  N  F  V  G  L  E  R  D  K  D  S  P  C  T  N  T  Y  P  L  Q  F  L  T  E  V  L  T  I  P  V  L  Q  L  V  S  S  L  *  N  K  I  L  I  F  H  T  M  I  L  V  *  V  *  G  L  </second_frame>
            <third_frame>   R  V  F  V  S  K  N  F  N  S  W  N  L  V  L  G  L  L  L  *  S  S  *  R  T  C  K  T  N  R  H  S  H  D  G  P  S  Q  A  T  *  P  H  T  W  S  D  I  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  P  S  E  V  R  R  T  V  I  S  S  V  G  G  L  F  C  I  L  F  A  Q  N  L  C  I  *  L  W  T  D  F  L  Q  N  K  E  K  L  I  *  K  L  A  Q  K  G  F  Y  T  H  *  T  *  G  K  S  I  N  Y  S  V  K  P  R  Y  I  N  T  L  N  L  N  S  L  F  V  L  K  Q  R  T  M  T  H  Y  T  I  F  V  Q  *  H  P  C  F  I  L  C  N  H  L  A  I  N  P  D  *  S  H  K  I  F  T  C  Y  P  D  *  A  *  I  L  W  D  *  N  V  T  K  T  H  H  A  L  T  P  I  L  F  N  F  S  L  R  C  *  Q  F  R  Y  C  N  *  C  P  H  F  K  T  K  S  S  F  F  T  Q  *  F  *  F  E  Y  K  D  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0109P04.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39999" stop="39733"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRRTVTSYVTPHLVRHPHLPSAASLRCHLRTVRSTTDRHKLRRWSLLHFVRSKSLHLALDRFPAKQRETYIKISTKRLLYTLNLRKKY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0109P04.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40096" stop="39881"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGSSFQKTSTLGIWYLDYFSDLHDEPARRTVIATTDRHKLRNPTLGQTSPSSFSSFTTLPLTDRQKYDGPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="108490" PGL_stop="109214"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108490" e_stop="109214"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="108490" e_stop="109214" e_length="725"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108490" stop="109214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108491" stop="109159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108491" stop="109076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246952" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCTTTCACCACACGTAGAAAGAAAGGATTAAGATATCCAAATTTGAAGTTTATTTGTGAGATTAGTGATTGTTTGAAGTTCATGTGTTGCGTTCTTGACTCATCTAACGATTTTGTTGTTCCAAGATGATATCAAATCCGGCTTCTAGAGTAAGTACATTATTGATATAGTCAGACATTATGGTACGGTCTTATATCAAAAAGTTTACGGCATTTGAAGGTCGATTTTATGTCGTTTAGGTCTTGATTATATACCCATTTATTCAAACATTTGTTTTAAATCTCATGGTATACCCTCGTTGCCTTACTATGTTTTCTTTCTTACTGAGTCTGTAGAAAGTGCTAAAAAAATAACAAAAGGGATAGTGTCATACTTGTGTGTGTATGTTTTCTGCCATGCACATATGGTTGCCTAATGACATTGATTTTTTTCTTGAACAGGTCTGCATTTTTTTTGTTCTTGTTTATTTTCAAAGCTCATTAGTCGTGTTTCGGGTAGCTTTCAAGTTGCTCTTTTCGTGGTTGTTATGCAAGCTCTTGATTTCGGGATGAATTTTCTTGCAAGATGCTCGTTTCTTTATTTGTGTGCGGATAACACATCCCATTTGAGCATGTTTTTCTGTTCTAAAAGTTTATCTCCGTCAACCTTGTTGTTCCGTATGATATGAAGGAGTTTTGATTATTCATTCTTAACCGGTAGCACTTGTTTAGGTGTTCTCTTTGT</gDNA_template>
            <first_frame> I  L  S  P  H  V  E  R  K  D  *  D  I  Q  I  *  S  L  F  V  R  L  V  I  V  *  S  S  C  V  A  F  L  T  H  L  T  I  L  L  F  Q  D  D  I  K  S  G  F  *  S  K  Y  I  I  D  I  V  R  H  Y  G  T  V  L  Y  Q  K  V  Y  G  I  *  R  S  I  L  C  R  L  G  L  D  Y  I  P  I  Y  S  N  I  C  F  K  S  H  G  I  P  S  L  P  Y  Y  V  F  F  L  T  E  S  V  E  S  A  K  K  I  T  K  G  I  V  S  Y  L  C  V  Y  V  F  C  H  A  H  M  V  A  *  *  H  *  F  F  S  *  T  G  L  H  F  F  C  S  C  L  F  S  K  L  I  S  R  V  S  G  S  F  Q  V  A  L  F  V  V  V  M  Q  A  L  D  F  G  M  N  F  L  A  R  C  S  F  L  Y  L  C  A  D  N  T  S  H  L  S  M  F  F  C  S  K  S  L  S  P  S  T  L  L  F  R  M  I  *  R  S  F  D  Y  S  F  L  T  G  S  T  C  L  G  V  L  F   </first_frame>
            <second_frame>  F  F  H  H  T  *  K  E  R  I  K  I  S  K  F  E  V  Y  L  *  D  *  *  L  F  E  V  H  V  L  R  S  *  L  I  *  R  F  C  C  S  K  M  I  S  N  P  A  S  R  V  S  T  L  L  I  *  S  D  I  M  V  R  S  Y  I  K  K  F  T  A  F  E  G  R  F  Y  V  V  *  V  L  I  I  Y  P  F  I  Q  T  F  V  L  N  L  M  V  Y  P  R  C  L  T  M  F  S  F  L  L  S  L  *  K  V  L  K  K  *  Q  K  G  *  C  H  T  C  V  C  M  F  S  A  M  H  I  W  L  P  N  D  I  D  F  F  L  E  Q  V  C  I  F  F  V  L  V  Y  F  Q  S  S  L  V  V  F  R  V  A  F  K  L  L  F  S  W  L  L  C  K  L  L  I  S  G  *  I  F  L  Q  D  A  R  F  F  I  C  V  R  I  T  H  P  I  *  A  C  F  S  V  L  K  V  Y  L  R  Q  P  C  C  S  V  *  Y  E  G  V  L  I  I  H  S  *  P  V  A  L  V  *  V  F  S  L  </second_frame>
            <third_frame>   S  F  T  T  R  R  K  K  G  L  R  Y  P  N  L  K  F  I  C  E  I  S  D  C  L  K  F  M  C  C  V  L  D  S  S  N  D  F  V  V  P  R  *  Y  Q  I  R  L  L  E  *  V  H  Y  *  Y  S  Q  T  L  W  Y  G  L  I  S  K  S  L  R  H  L  K  V  D  F  M  S  F  R  S  *  L  Y  T  H  L  F  K  H  L  F  *  I  S  W  Y  T  L  V  A  L  L  C  F  L  S  Y  *  V  C  R  K  C  *  K  N  N  K  R  D  S  V  I  L  V  C  V  C  F  L  P  C  T  Y  G  C  L  M  T  L  I  F  F  L  N  R  S  A  F  F  L  F  L  F  I  F  K  A  H  *  S  C  F  G  *  L  S  S  C  S  F  R  G  C  Y  A  S  S  *  F  R  D  E  F  S  C  K  M  L  V  S  L  F  V  C  G  *  H  I  P  F  E  H  V  F  L  F  *  K  F  I  S  V  N  L  V  V  P  Y  D  M  K  E  F  *  L  F  I  L  N  R  *  H  L  F  R  C  S  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0109P04.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108928" stop="109158"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGLHFFCSCLFSKLISRVSGSFQVALFVVVMQALDFGMNFLARCSFLYLCADNTSHLSMFFCSKSLSPSTLLFRMI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0109P04.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108709" stop="108906"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSILCRLGLDYIPIYSNICFKSHGIPSLPYYVFFLTESVESAKKITKGIVSYLCVYVFCHAHMVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="109285" PGL_stop="110023"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109285" e_stop="110023"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="109285" e_stop="110023" e_length="739"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109285" stop="110023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368607" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTGGCATGACTTAGGCTCTGACATTTCGTAGTTCATATTGTCGCATGATTTGGCTTAAAAAAAGTATTTTCGTATATTAGTCTGTTTGCTGCTCTGGTCTTTGTTTTAATTTTAGAAGTATCTTTGCTTTGTTATTTTCGGGATGCTAATTCCTTATCCCTTTCATTTTTCCATATCTAACATCAACTCGAGCCGATATTGGAGTCTATCCTTGCATTCCTCCGAGTAAAACTTTTTGAGACATCCTCATTTTGTTCAAGTGAAAGGGGAGAAATTACAGGGGAAATGACTGATTTATGTGCCTTGGAATATTCAAAAATGGACTCTATGCATGTGAATATACAATGTGATACATTCATATACTGATTGTATATGCCGATATAAAGTCGGGATATACTGCATACCGGTGCAAAATCACAGAAAATACTGGTGGAAGTGCAGGAATATGTAATCAAAATAAAAATATAGGTTCCAAAAGTCAAGAACTGATCGGATATATACCATATACGATAGTATACAATCAGTGTATACGCTGGCTGTTACACATAAAATAGGCCAAGGACTTAAAGAAATTTCCTGCAGGTCCATTAGTAGGAATTTGGGCCAAAGGTCCAAAATTTGACATCTCCTTTTTTCCTTGCTATTTATTATTATATATTGACTAACATTATTTGATTAATTTTGGTTAATTTAACTATATTCCCAAAATAGTAATTTCCCTTATATTCAATTTTTTT</gDNA_template>
            <first_frame> H  W  H  D  L  G  S  D  I  S  *  F  I  L  S  H  D  L  A  *  K  K  Y  F  R  I  L  V  C  L  L  L  W  S  L  F  *  F  *  K  Y  L  C  F  V  I  F  G  M  L  I  P  Y  P  F  H  F  S  I  S  N  I  N  S  S  R  Y  W  S  L  S  L  H  S  S  E  *  N  F  L  R  H  P  H  F  V  Q  V  K  G  E  K  L  Q  G  K  *  L  I  Y  V  P  W  N  I  Q  K  W  T  L  C  M  *  I  Y  N  V  I  H  S  Y  T  D  C  I  C  R  Y  K  V  G  I  Y  C  I  P  V  Q  N  H  R  K  Y  W  W  K  C  R  N  M  *  S  K  *  K  Y  R  F  Q  K  S  R  T  D  R  I  Y  T  I  Y  D  S  I  Q  S  V  Y  T  L  A  V  T  H  K  I  G  Q  G  L  K  E  I  S  C  R  S  I  S  R  N  L  G  Q  R  S  K  I  *  H  L  L  F  S  L  L  F  I  I  I  Y  *  L  T  L  F  D  *  F  W  L  I  *  L  Y  S  Q  N  S  N  F  P  Y  I  Q  F  F  </first_frame>
            <second_frame>  I  G  M  T  *  A  L  T  F  R  S  S  Y  C  R  M  I  W  L  K  K  S  I  F  V  Y  *  S  V  C  C  S  G  L  C  F  N  F  R  S  I  F  A  L  L  F  S  G  C  *  F  L  I  P  F  I  F  P  Y  L  T  S  T  R  A  D  I  G  V  Y  P  C  I  P  P  S  K  T  F  *  D  I  L  I  L  F  K  *  K  G  R  N  Y  R  G  N  D  *  F  M  C  L  G  I  F  K  N  G  L  Y  A  C  E  Y  T  M  *  Y  I  H  I  L  I  V  Y  A  D  I  K  S  G  Y  T  A  Y  R  C  K  I  T  E  N  T  G  G  S  A  G  I  C  N  Q  N  K  N  I  G  S  K  S  Q  E  L  I  G  Y  I  P  Y  T  I  V  Y  N  Q  C  I  R  W  L  L  H  I  K  *  A  K  D  L  K  K  F  P  A  G  P  L  V  G  I  W  A  K  G  P  K  F  D  I  S  F  F  P  C  Y  L  L  L  Y  I  D  *  H  Y  L  I  N  F  G  *  F  N  Y  I  P  K  I  V  I  S  L  I  F  N  F  F </second_frame>
            <third_frame>   L  A  *  L  R  L  *  H  F  V  V  H  I  V  A  *  F  G  L  K  K  V  F  S  Y  I  S  L  F  A  A  L  V  F  V  L  I  L  E  V  S  L  L  C  Y  F  R  D  A  N  S  L  S  L  S  F  F  H  I  *  H  Q  L  E  P  I  L  E  S  I  L  A  F  L  R  V  K  L  F  E  T  S  S  F  C  S  S  E  R  G  E  I  T  G  E  M  T  D  L  C  A  L  E  Y  S  K  M  D  S  M  H  V  N  I  Q  C  D  T  F  I  Y  *  L  Y  M  P  I  *  S  R  D  I  L  H  T  G  A  K  S  Q  K  I  L  V  E  V  Q  E  Y  V  I  K  I  K  I  *  V  P  K  V  K  N  *  S  D  I  Y  H  I  R  *  Y  T  I  S  V  Y  A  G  C  Y  T  *  N  R  P  R  T  *  R  N  F  L  Q  V  H  *  *  E  F  G  P  K  V  Q  N  L  T  S  P  F  F  L  A  I  Y  Y  Y  I  L  T  N  I  I  *  L  I  L  V  N  L  T  I  F  P  K  *  *  F  P  L  Y  S  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0109P04.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109637" stop="109840"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIHILIVYADIKSGYTAYRCKITENTGGSAGICNQNKNIGSKSQELIGYIPYTIVYNQCIRWLLHIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="124924" PGL_stop="125597"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124924" e_stop="125597"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="124924" e_stop="125597" e_length="674"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124924" stop="125597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340751" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAGCCAGGCGGGTTCCTTCCCCTCTCCCTTATCCTATTATACGAAAATTGTACTCGAAGGCCCCAGGTCGAAATCTCCCTTTCTCTCTTGTCCTTCCTCTAAAATGGGATGTCTCCCTTCGATTTTCTGTTGATGATCGTACAAGGATAGAGTTGGAAGCTTATGCTGAAGAGGGATTTGAATTTCGAAATCAAATCCCATCCATTTTCCGCCCAAAAATTTTCTTCCCATTTTTCTCTCCTATAAATATCAGTGAGAGAAAAGGGAAAAAACTTCTTTAGCTTGAAAAAATATTACAAAAAGTAGAAAGATTTTGAGTCCATTTTTGTTAGCAAGAACTTACAAGAAAAGGAATTACTAGGTTATAATATTCATATAACAAACATGCGATAATTTATTTTTTTTTGTTATTTGTTGCAAAATTTGTTGGATTTCTGAATCTTAAAGGAAGATATTGAAGTCTATCCAAGCTCATTCCTATCTCTGGTTCTCTATACGAAGAAGGTACAACTCGTTTCTCGATAACATACTCTCCTTTTCTCCTCCGTTTTCTCTGTGAAATAGCACTTTGTTGCTGGAAATTTTCTGCTGTTTGTTCATCTATTTAATGTTAATTCAATGGAGATATTGGTATGACTTATATGTTGTTGATTCATTTAAGTAGATATGGTA</gDNA_template>
            <first_frame> S  S  Q  A  G  S  F  P  S  P  L  S  Y  Y  T  K  I  V  L  E  G  P  R  S  K  S  P  F  L  S  C  P  S  S  K  M  G  C  L  P  S  I  F  C  *  *  S  Y  K  D  R  V  G  S  L  C  *  R  G  I  *  I  S  K  S  N  P  I  H  F  P  P  K  N  F  L  P  I  F  L  S  Y  K  Y  Q  *  E  K  R  E  K  T  S  L  A  *  K  N  I  T  K  S  R  K  I  L  S  P  F  L  L  A  R  T  Y  K  K  R  N  Y  *  V  I  I  F  I  *  Q  T  C  D  N  L  F  F  F  V  I  C  C  K  I  C  W  I  S  E  S  *  R  K  I  L  K  S  I  Q  A  H  S  Y  L  W  F  S  I  R  R  R  Y  N  S  F  L  D  N  I  L  S  F  S  P  P  F  S  L  *  N  S  T  L  L  L  E  I  F  C  C  L  F  I  Y  L  M  L  I  Q  W  R  Y  W  Y  D  L  Y  V  V  D  S  F  K  *  I  W   </first_frame>
            <second_frame>  V  A  R  R  V  P  S  P  L  P  Y  P  I  I  R  K  L  Y  S  K  A  P  G  R  N  L  P  F  S  L  V  L  P  L  K  W  D  V  S  L  R  F  S  V  D  D  R  T  R  I  E  L  E  A  Y  A  E  E  G  F  E  F  R  N  Q  I  P  S  I  F  R  P  K  I  F  F  P  F  F  S  P  I  N  I  S  E  R  K  G  K  K  L  L  *  L  E  K  I  L  Q  K  V  E  R  F  *  V  H  F  C  *  Q  E  L  T  R  K  G  I  T  R  L  *  Y  S  Y  N  K  H  A  I  I  Y  F  F  L  L  F  V  A  K  F  V  G  F  L  N  L  K  G  R  Y  *  S  L  S  K  L  I  P  I  S  G  S  L  Y  E  E  G  T  T  R  F  S  I  T  Y  S  P  F  L  L  R  F  L  C  E  I  A  L  C  C  W  K  F  S  A  V  C  S  S  I  *  C  *  F  N  G  D  I  G  M  T  Y  M  L  L  I  H  L  S  R  Y  G  </second_frame>
            <third_frame>   *  P  G  G  F  L  P  L  S  L  I  L  L  Y  E  N  C  T  R  R  P  Q  V  E  I  S  L  S  L  L  S  F  L  *  N  G  M  S  P  F  D  F  L  L  M  I  V  Q  G  *  S  W  K  L  M  L  K  R  D  L  N  F  E  I  K  S  H  P  F  S  A  Q  K  F  S  S  H  F  S  L  L  *  I  S  V  R  E  K  G  K  N  F  F  S  L  K  K  Y  Y  K  K  *  K  D  F  E  S  I  F  V  S  K  N  L  Q  E  K  E  L  L  G  Y  N  I  H  I  T  N  M  R  *  F  I  F  F  C  Y  L  L  Q  N  L  L  D  F  *  I  L  K  E  D  I  E  V  Y  P  S  S  F  L  S  L  V  L  Y  T  K  K  V  Q  L  V  S  R  *  H  T  L  L  F  S  S  V  F  S  V  K  *  H  F  V  A  G  N  F  L  L  F  V  H  L  F  N  V  N  S  M  E  I  L  V  *  L  I  C  C  *  F  I  *  V  D  M  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0109P04.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124925" stop="125206"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VARRVPSPLPYPIIRKLYSKAPGRNLPFSLVLPLKWDVSLRFSVDDRTRIELEAYAEEGFEFRNQIPSIFRPKIFFPFFSPINISERKGKKLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 129 chains have been computed
$ 
$ memory statistics:
$ 67696 bytes spliced alignments in total
$ 28 spliced alignments have been stored
$ 2417 bytes was the average size of a spliced alignment
$ 16728 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1672 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 149 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:24:02
-->
