<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:35:30"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201801" ref_strand="+" ref_description="SGN-E201801 [cLEC-11-N1]">
      <seq>tttttccatttttaagaggaagaagaagaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtcgatgggtacaacttaccaatgcttgtggtaccacaaggtggttctggtaacaattgtacaagtaccggatgtgtggtggatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="1406" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1106" g_stop="942" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="941" i_stop="499" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="498" g_stop="73" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="591" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E201801" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1106" e_stop="942"/>
          <exon e_start="498" e_stop="73"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGA</genome_strand>
        <mrna_strand>TTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321815" ref_strand="+" ref_description="SGN-E321815 [cTOB-25-B12]">
      <seq>tcctttttccatttttaagaggaagaagaagaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtcgatgggtacaacttaccaatgcttgtggtaccacaaagtggttctggtacaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="1409" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1109" g_stop="942" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="941" i_stop="499" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="498" g_stop="102" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="564" r_length="396" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E321815" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1109" e_stop="942"/>
          <exon e_start="498" e_stop="102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTG</genome_strand>
        <mrna_strand>TCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAAGTGGTTCTGGT-ACAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212869" ref_strand="+" ref_description="SGN-E212869 [cLEC-73-D5]">
      <seq>tttttccatttttaagaggaagaagaagaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtcgatgggtacaacttaccaatgcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="1406" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1106" g_stop="942" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="941" i_stop="499" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="498" g_stop="132" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="532" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E212869" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1106" e_stop="942"/>
          <exon e_start="498" e_stop="132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGT</genome_strand>
        <mrna_strand>TTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272543" ref_strand="+" ref_description="SGN-E272543 [cLEM-21-E8]">
      <seq>cctttttccatttttaagaggaagaagaagaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtcgatgggtacaacttaccaatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="1408" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1108" g_stop="942" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="941" i_stop="499" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="498" g_stop="134" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="532" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E272543" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1108" e_stop="942"/>
          <exon e_start="498" e_stop="134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTT</genome_strand>
        <mrna_strand>CCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304013" ref_strand="+" ref_description="SGN-E304013 [cLEX-6-E5]">
      <seq>tttctcctttttccatttttaagaggaagaagaagaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtcgatgggtacaacttaccaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="1413" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1113" g_stop="942" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="941" i_stop="499" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="498" g_stop="136" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="535" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E304013" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1113" e_stop="942"/>
          <exon e_start="498" e_stop="136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGC</genome_strand>
        <mrna_strand>TTTCTCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390694" ref_strand="+" ref_description="SGN-E390694 [TUS-46-J14]">
      <seq>atttctcctttttccatttttaagaggaagaagaagaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtcgatgggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="1414" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1114" g_stop="942" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="941" i_stop="499" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="498" g_stop="150" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="522" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E390694" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1114" e_stop="942"/>
          <exon e_start="498" e_stop="150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTA</genome_strand>
        <mrna_strand>ATTTCTCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205659" ref_strand="+" ref_description="SGN-E205659 [cLEC-21-N16]">
      <seq>ctttttccatttttaagaggaagaagaagaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="1407" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1107" g_stop="942" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="941" i_stop="499" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="498" g_stop="158" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="507" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E205659" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1107" e_stop="942"/>
          <exon e_start="498" e_stop="158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTC</genome_strand>
        <mrna_strand>CTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244441" ref_strand="+" ref_description="SGN-E244441 [cLEF-3-G8]">
      <seq>ctttttccatttttaagaggaagaacaacaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagagaaactgctctgtctatatgctctgttcttaactattacacagctgctcatagcacgtgtaaattcagctgcaacatttacaatggtgaataaatgtcaccaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccgccgattgcggctccggtaagctcgaatgcgccggtggcaaccctgcaccgccagcaactctagctgaattcacactctacggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="1407" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1107" g_stop="942" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="941" i_stop="499" i_length="443">
            <donor d_prob="0.928" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="498" g_stop="193" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="472" r_length="306" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E244441" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1107" e_stop="942"/>
          <exon e_start="498" e_stop="193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGAT</genome_strand>
        <mrna_strand>CTTTTTCCATTTTTAAGAGGAAGAACAACAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGAGAAACTGCTCTGTCTATATGCTCTGTTCTTAACTATTACACAGCTGCTCATAGCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCACCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGCCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACCCTGCACCGCCAGCAACTCTAGCTGAATTCACACTCTACGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336634" ref_strand="+" ref_description="SGN-E336634 [cTOE-4-J5]">
      <seq>tacatttctcctttttccatttttaagaggaagaagaagaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgcccggcactctagctgaattcacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="1417" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1117" g_stop="942" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="941" i_stop="499" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="498" g_stop="201" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="474" r_length="298" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E336634" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1117" e_stop="942"/>
          <exon e_start="498" e_stop="201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTTCTCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACT</genome_strand>
        <mrna_strand>TACATTTCTCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCCGGCACTCTAGCTGAATTCACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323393" ref_strand="+" ref_description="SGN-E323393 [cTOC-10-O23]">
      <seq>atttctcctttttccatttttaagaagaacgagaanaggtagaatgctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="1414" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1114" g_stop="942" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="941" i_stop="499" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="498" g_stop="216" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="456" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E323393" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1114" e_stop="942"/>
          <exon e_start="498" e_stop="216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCT</genome_strand>
        <mrna_strand>ATTTCTCCTTTTTCCATTTTTAAGAAGAACGAGAANAGGTAGAATGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338317" ref_strand="+" ref_description="SGN-E338317 [cTOE-13-L5]">
      <seq>tcctttttccatttttaagaggaagaagaagaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="1409" stop="16"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1109" g_stop="942" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="941" i_stop="499" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="498" g_stop="316" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="351" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E338317" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1109" e_stop="942"/>
          <exon e_start="498" e_stop="316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATT</genome_strand>
        <mrna_strand>TCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234675" ref_strand="+" ref_description="SGN-E234675 [cLEL-6-P11](-)">
      <seq>ggcaccagattctttctactgtagatcaacatccactgttcaatgccataagccatgaacttttgagtgaaacactagtactggagttgtgatgttaaaaacattgaaaattttgcataatgtttgcttgatagatgacattgggattgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="11288" stop="10542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10994" g_stop="10842" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="153" polyA_stop="165"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E234675" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10994" e_stop="10842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGAGTATTCTTTCTACTGTAGATCAACATCCACTGTTCAATGCCATAAGCCATGAACTTTTGAGTGAAACACTAGTACTGGAGTTGTGATGTTAAAAACATTGAAAATTTTGCATAATGTTTGCTTGATAGATGACATTGGGATTGAGA</genome_strand>
        <mrna_strand>GGCACCAG-ATTCTTTCTACTGTAGATCAACATCCACTGTTCAATGCCATAAGCCATGAACTTTTGAGTGAAACACTAGTACTGGAGTTGTGATGTTAAAAACATTGAAAATTTTGCATAATGTTTGCTTGATAGATGACATTGGGATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474913" ref_strand="+" ref_description="SGN-E474913 [cSTB-38-K2]">
      <seq>agccgttatgctggccaatagactaggtcctgatgtacgagaaggaaagcgaaggcaattcagttacataggcagattattgcgagaagttgagcctgaattgatggatggtttgattcaggcaacaaaagatggagaccaaactaaatttcaggctttatctggttcagagctttcggctactgaagatattgatgaagaagttgaagagactgaatatgaggatgacgaagagagttctgaggacgatattgttttagctgatagatggtttgatggcttggtcaataaggacgttgacatctctaaagaaatctattctctaagtgaggttgattttgatcgccaggagttacgtggtcttgttaggaaagtgcaatcaatacgagaaaaaggaagcaattcagacaaggaggaaggaaaagtaaatagtgatgttgtccgtgcagaaagatctctcactcgtttccttcgagatttagcgaagcagcttcatagctaaatagagtatcagattcatctgggagagtatactccatattggccatcaatagatcctcaaaaagtacatttaaatgtatttgtaatacttcctagtacacgcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="15056" stop="10812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14852" g_stop="14834" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14833" i_stop="14749" i_length="85">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14748" g_stop="14697" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="71" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14696" i_stop="12368" i_length="2329">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12367" g_stop="12204" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="235" r_length="164" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12203" i_stop="11911" i_length="293">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.930" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11910" g_stop="11797" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="349" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11796" i_stop="11371" i_length="426">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11370" g_stop="11112" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="608" r_length="259" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E474913" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14852" e_stop="14834"/>
          <exon e_start="14748" e_stop="14697"/>
          <exon e_start="12367" e_stop="12204"/>
          <exon e_start="11910" e_stop="11797"/>
          <exon e_start="11370" e_stop="11112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCGTTATGCTGGCCAAGGTAGTTTTATGTTCTATCAATTGTGAGGTATTATTGCTATTTTTTCGTTGTTAGTGAGTGTAACATGTTTGCTCATTTGCCGCAGAGACTAGGTCCTGATGTACGAGAAGGAAAGCGAAGGCAATTCAGTTACATAGGTATGCTTTAAGATGCTTACTTTCTCCATCAAAGTGATCTTTATATCCAAATGTTTTATAGCATCGTTCTGTATTCAGATAAGCAGAAGTTGTAAGTTATAGTACCTTTAATCTATTAGATATCTCAGTTGTATACTTATATCCAATGTAGGATTAATATAGTCAATATTGATTACTTGATAAGTAAAAAGGAACTCGCAAATTACTTAATTAGCATGGTAGTGAACTGTTTTAAAAGATGGCATATAATCAAGAGCATTTGGTAGGAAAGAAGGAGAATATATGGAGTATAAGGATTTAGGAAAGAAGTATAGTAATCTCAATTTGCTAAAATTGAAAAAGCAGATGAGTTAGTAGTATGCAGTGCCGTATTTGAAATTCATAAACTTAATGTTTTACCTTGATTCAAATCACATTACACTTTTATCCATTATTTTGAATTCATTTGAAACTACACTCTAAAACATGACATTTTAAATTTACAAGTATGGATCGCCTCTTTTTAGCAGATGTCTCTATCAAAATGGGTCTATTACTTTCCTCGACCCCTAAAGGACAAACATGTTGACATGAATCCGTATATGGTTGTAGTTTACTTACACCAACAACATCAAATTATTAGAGAAGAACAGTACCCTTGGAGTTGTATTCTTCCTTACTAGTTGGTGCTTATCCCGCATATATATATTCTACCTTAGTGTTGGTGCTTATCCCGCATATATATAGTCTACCTTAGTGCTGGTGCCATCTTCTTTTTTATTTATTTGTATAAAATGGCGGGGGGGGGGGGGTTTCGACATTGAGAGGGACTACACTGGGTATGATGATGTTGTAGGATTTTTAGTGCTGGGGCTACCTAAAACCGCTCTTCCAGTGATTTTGTGATGTTAGAAACAATTCATAAATTAACAACTCAAGAAGAGGGAAGCATTTTTTGTCAATCTATTGTCGGTCATATATAATCTAAATTTCTCTGTATTGTTCAACCTCTGATCTTGTAAACATCTTAGTTTTCTTTGCCTCACTGGAACAACTATGGGATCTATGGTTCTTTCCGTCTGATAAATTCAGTAACTGATTTATCATAAGCTTTCTCTAGTCATCAATTTTACGCTATAAAAACAAATACTTGTGTTACACAAAAAAATAACAACAATTGGTGAAAGAAGTTTATGTCGCATAGAATCTTCTTGTAGTTCATATATTTTGCATCCACAAAAGCAAATAATTTATGAGATGTAATAGTAGGCTTTTAGGGGATTGATGCAAAAAGATAGAACTGAGCAGTAGGAATGCTTGTGAAACTGCCTTCAGATCTGATGCATAACGTTTGGTAATTTATCGAGTTCCTTTTGCAAAGTTTTTCATTCTCACCATTTGTCATCGGAGTGGCTTCTGTGACAGATTCAATGGAAAGGGCTCAAAGGAAATTTGATCTCTTTGGTGCAGAATGGAATGGATAAACAAATTTGTGAGTTGAGGTTGATGATCCCAAAACGTTATTGGGATAGCAAAAATAGAAAATTAGTGAATGGTAATAGAGTTCTAATTTGAATCCTTCTAATTTCCTTATCTCATACTTTTTAGGAGGTTCATGCAAATGGAGGGTAAACACTGAATAGTAATACTGCAGCGCTGTCAATTGAAAGAAGAGGAATCAACTTGATATTATTCTTGAACAGAAGCACACTAATAATAAATTTATTCTTTTGAGAAGGGTCATTCTAGTGAAAAAGGTGTTGGTGTGTCACTTAATGTTTGACCTATATATGCTATCTCTTATTAGAAGATCCAGCAAATTATATACAGCTGTTTGAGTACATACATGTTAATAACAGAGGAAGCAATCTGAAAATTAGATATCCCTTGTGAATGCATTATCCACTTCCTGCCTTTTCATTTCTTGTTCCAGGCCACAGTGAATATGCTTGTCATGTCTTTTGTTCCATTTTCTCTAGAACTGTGCTTTGTATAATTGATTTGTGAACTGTTCATTCCCATGACTGAAAAAATCATGATGTTCGGTATGAGTTGTGGTTTATTAATTGATTGATCCCTCATAGTAATTGTGATGCATCATATTACTAAAGTTCTATTAATGTTGTTATTTATCTACATTTTGATAAGAGATTGTTTACATTGATGGTTTGAATTCTAAAATCTATGCACTCATAAACCATGGAATTTTTCTGCTGAATATTTTGGGAGTAAGTTAACCTTGGAAATGTTTGCAGTGTTATAATTTCAGTTTCTTGTCTTGAAATTTGATCACATGAAATTAATGTATGTTGGATCTATATGCTCACGATGTAATATGAATTCATGTTAGGTAGATTATTGCGAGAAGTTAAGCCTGAATTGATGGATGGTTTAATTCAGGCAACAAAAGATGGAGACCAAACTAAATTTCAGGCTTTATCTGGTTCGGAACTTTCGGCTACCGAAGATGTTGATGAGGAAGTTGAAGAGACTGAATATGAGGATGACGAAGAGGTATGTCATAATCTCACTCCTCATTTTGGGGATCAAATTTCTTTGGCTGCTTTACTGTGTTTAAAGTTATGACTGAGCACAAGAAACTACAATCGCGAATCTATTTCCATGAAAAATGAACAAGTATGAGAACAACTGTTCTGCTCGTCTGTTTAATAAAAGAGCTGATTACGAAACCTGCATAATGTGGGTTAGATAACATAACAGGACAACAATTTAAATTTTACTTGGGAACTAATTTCAGGACTGCAATTGAAAGTTTGAAGTTCTCTTTTTCTTGTGCTTATTTTCAGAGTTCTGAGGACAATATTGCTTTAGCCGATAGATGGTTTGATGGCTTGGTCAATAAGGACGTTGACATCTCTAAAGAAATCTATTCTCTAAGTGAGGTTGATTTTGATCGCCAGGTTAGTTCAGATGTTATACGCAGGTCTGGAATTATCTTCTTTTTTGGATTTTCTGGTGTATAAGTTGAATTGACACATAATTTTATGATTTTCATGCTCAATCTCTTCTTGTATATGTTCATTTCAAAAGACAAATAATCGGTAAAGGAAAACTAGTAATGAAGAATTAATATGGACAGATCAGTATTTCAGGCTGTCAAATGTGCACCCTGACCTTAAATGACATAGTTGTTAGCTTAGTTAACTGCGCGTTTCATTACAATTAGCTTAAAGGTGTCAACAATTTACTTGTGCTGTTTTTATGGAATAAGCTGCCCGTACTTGAGATATTAAAGAAAAATTATGTGTCTTTTGTATGTAAATTATAATTTGCTTGTCTTGCCATGGTATAATATTTATCTGATTATGTTCTATCTCGTTGTACAGGAGTTACGTGGTCTTGTTAGGAATGTACAATCAATACGTGAAAAAAGGAGCAAATCAGACGAGGGGGAAGGAAAAGTAAACACTGATGTTGTCCGTGCAGAAAGGTCTCTCACACGTTTCCTTCGAGACCTAGCGAAACAGCTTCACAGCTAAATAGAATATCAGATTCATCTGTGAGAGTATACTCCATGCTGGCCATCATTAGATCCTCAAAAAGTACATTAAAATGTATTTGTAATATTTCCTAGTACATGCATGT</genome_strand>
        <mrna_strand>AGCCGTTATGCTGGCCAAT.....................................................................................AGACTAGGTCCTGATGTACGAGAAGGAAAGCGAAGGCAATTCAGTTACATAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATTATTGCGAGAAGTTGAGCCTGAATTGATGGATGGTTTGATTCAGGCAACAAAAGATGGAGACCAAACTAAATTTCAGGCTTTATCTGGTTCAGAGCTTTCGGCTACTGAAGATATTGATGAAGAAGTTGAAGAGACTGAATATGAGGATGACGAAGAG.....................................................................................................................................................................................................................................................................................................AGTTCTGAGGACGATATTGTTTTAGCTGATAGATGGTTTGATGGCTTGGTCAATAAGGACGTTGACATCTCTAAAGAAATCTATTCTCTAAGTGAGGTTGATTTTGATCGCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTACGTGGTCTTGTTAGGAAAGTGCAATCAATACGAGAAAAAGGAAGCAATTCAGACAAGGAGGAAGGAAAAGTAAATAGTGATGTTGTCCGTGCAGAAAGATCTCTCACTCGTTTCCTTCGAGATTTAGCGAAGCAGCTTCATAGCTAAATAGAGTATCAGATTCATCTGGGAGAGTATACTCCATATTGGCCATCAATAGATCCTCAAAAAGTACATTTAAATGTATTTGTAATACTTCCTAGTACACGCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539752" ref_strand="+" ref_description="SGN-E539752 [TUS-59-K19]">
      <seq>caaaaatggctaatgtaatgaagcctctgatgaattggccaaaatggcatcactatttatacgttcgcgcttcattcatccactttgttcaatctcaatctcaatctccactcttctcaacctgcaatgttcgccgactgccgtcgttcacggcatcaccttccggttaccggcaagctcattttcgttccggcgcggcacttaaatcacgtgaaagtccattaccgttagatcaatcagagggcgacagcgattccgatgaaaaaacaaggaagagtcgtaacgagaagaagcgtgaagctcgacgcgccgtccggtgggctatggatttagctaagttctctgctcctcaaattaagcgcattctcagagtggcttcaacggagcaagaggtatacgaagccgttatgctggccaagagactaggtcctgatgtacgagaaggaaagcgaaggcaattcagttacataggtagattattgcgagaagttaagcctgaattgatggatggtttaattcaggcaacaaaagatggagaccaaactaaatttcaggctttatctggttcggaactttcggctaccgaagatgttgatgaggaagttgaagagactgaatatgaggatgacgaagagagttctgaggacaatattgctttagccgatagatggtttgatggcttggtcaataaggacgttgacatctctaaagaatctattctctaagtgaggttgattttgatcgcccaggagtacgtggtcttgttaggaatgtacaatcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="15620" stop="11035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15320" g_stop="14951" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14950" i_stop="14883" i_length="68">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14882" g_stop="14834" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="419" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14833" i_stop="14749" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14748" g_stop="14697" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="471" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14696" i_stop="12368" i_length="2329">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12367" g_stop="12204" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="635" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12203" i_stop="11911" i_length="293">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11910" g_stop="11797" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="749" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11796" i_stop="11371" i_length="426">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11370" g_stop="11335" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="784" r_length="35" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E539752" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15320" e_stop="14951"/>
          <exon e_start="14882" e_stop="14834"/>
          <exon e_start="14748" e_stop="14697"/>
          <exon e_start="12367" e_stop="12204"/>
          <exon e_start="11910" e_stop="11797"/>
          <exon e_start="11370" e_stop="11335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGGCTAATGTAATGAAGCCTCTGATGAATTGGCCAAAATGGCATCACTATTTATACGTTCGCGCTTCATTCATCCACTTTGTTCAATCTCAATCTCAATCTCCACTCTTCTCAACCTGCAATGTTCGCCGACTGCCGTCGTTCACGGCATCACCTTCCGGTTACCGGCAAGCTCATTTTCGTTCCGGCGCGGCACTTAAATCACGTGAAAGTCCATTACCGTTAGATCAATCAGAGGGCGACAGCGATTCCGATGAAAAAACAAGGAAGAGTCGTAACGAGAAGAAGCGTGAAGCTCGACGCGCCGTCCGGTGGGCTATGGATTTAGCTAAGTTCTCTGCTCCTCAAATTAAGCGCATTCTCAGGTAATTAGATAACTTTCTAGTTACAATTGACTAAATGATATAAGTTAATGTTTCATATTTCACTGTAGAGTGGCTTCAACGGAGCAAGAGGTATACGAAGCCGTTATGCTGGCCAAGGTAGTTTTATGTTCTATCAATTGTGAGGTATTATTGCTATTTTTTCGTTGTTAGTGAGTGTAACATGTTTGCTCATTTGCCGCAGAGACTAGGTCCTGATGTACGAGAAGGAAAGCGAAGGCAATTCAGTTACATAGGTATGCTTTAAGATGCTTACTTTCTCCATCAAAGTGATCTTTATATCCAAATGTTTTATAGCATCGTTCTGTATTCAGATAAGCAGAAGTTGTAAGTTATAGTACCTTTAATCTATTAGATATCTCAGTTGTATACTTATATCCAATGTAGGATTAATATAGTCAATATTGATTACTTGATAAGTAAAAAGGAACTCGCAAATTACTTAATTAGCATGGTAGTGAACTGTTTTAAAAGATGGCATATAATCAAGAGCATTTGGTAGGAAAGAAGGAGAATATATGGAGTATAAGGATTTAGGAAAGAAGTATAGTAATCTCAATTTGCTAAAATTGAAAAAGCAGATGAGTTAGTAGTATGCAGTGCCGTATTTGAAATTCATAAACTTAATGTTTTACCTTGATTCAAATCACATTACACTTTTATCCATTATTTTGAATTCATTTGAAACTACACTCTAAAACATGACATTTTAAATTTACAAGTATGGATCGCCTCTTTTTAGCAGATGTCTCTATCAAAATGGGTCTATTACTTTCCTCGACCCCTAAAGGACAAACATGTTGACATGAATCCGTATATGGTTGTAGTTTACTTACACCAACAACATCAAATTATTAGAGAAGAACAGTACCCTTGGAGTTGTATTCTTCCTTACTAGTTGGTGCTTATCCCGCATATATATATTCTACCTTAGTGTTGGTGCTTATCCCGCATATATATAGTCTACCTTAGTGCTGGTGCCATCTTCTTTTTTATTTATTTGTATAAAATGGCGGGGGGGGGGGGGTTTCGACATTGAGAGGGACTACACTGGGTATGATGATGTTGTAGGATTTTTAGTGCTGGGGCTACCTAAAACCGCTCTTCCAGTGATTTTGTGATGTTAGAAACAATTCATAAATTAACAACTCAAGAAGAGGGAAGCATTTTTTGTCAATCTATTGTCGGTCATATATAATCTAAATTTCTCTGTATTGTTCAACCTCTGATCTTGTAAACATCTTAGTTTTCTTTGCCTCACTGGAACAACTATGGGATCTATGGTTCTTTCCGTCTGATAAATTCAGTAACTGATTTATCATAAGCTTTCTCTAGTCATCAATTTTACGCTATAAAAACAAATACTTGTGTTACACAAAAAAATAACAACAATTGGTGAAAGAAGTTTATGTCGCATAGAATCTTCTTGTAGTTCATATATTTTGCATCCACAAAAGCAAATAATTTATGAGATGTAATAGTAGGCTTTTAGGGGATTGATGCAAAAAGATAGAACTGAGCAGTAGGAATGCTTGTGAAACTGCCTTCAGATCTGATGCATAACGTTTGGTAATTTATCGAGTTCCTTTTGCAAAGTTTTTCATTCTCACCATTTGTCATCGGAGTGGCTTCTGTGACAGATTCAATGGAAAGGGCTCAAAGGAAATTTGATCTCTTTGGTGCAGAATGGAATGGATAAACAAATTTGTGAGTTGAGGTTGATGATCCCAAAACGTTATTGGGATAGCAAAAATAGAAAATTAGTGAATGGTAATAGAGTTCTAATTTGAATCCTTCTAATTTCCTTATCTCATACTTTTTAGGAGGTTCATGCAAATGGAGGGTAAACACTGAATAGTAATACTGCAGCGCTGTCAATTGAAAGAAGAGGAATCAACTTGATATTATTCTTGAACAGAAGCACACTAATAATAAATTTATTCTTTTGAGAAGGGTCATTCTAGTGAAAAAGGTGTTGGTGTGTCACTTAATGTTTGACCTATATATGCTATCTCTTATTAGAAGATCCAGCAAATTATATACAGCTGTTTGAGTACATACATGTTAATAACAGAGGAAGCAATCTGAAAATTAGATATCCCTTGTGAATGCATTATCCACTTCCTGCCTTTTCATTTCTTGTTCCAGGCCACAGTGAATATGCTTGTCATGTCTTTTGTTCCATTTTCTCTAGAACTGTGCTTTGTATAATTGATTTGTGAACTGTTCATTCCCATGACTGAAAAAATCATGATGTTCGGTATGAGTTGTGGTTTATTAATTGATTGATCCCTCATAGTAATTGTGATGCATCATATTACTAAAGTTCTATTAATGTTGTTATTTATCTACATTTTGATAAGAGATTGTTTACATTGATGGTTTGAATTCTAAAATCTATGCACTCATAAACCATGGAATTTTTCTGCTGAATATTTTGGGAGTAAGTTAACCTTGGAAATGTTTGCAGTGTTATAATTTCAGTTTCTTGTCTTGAAATTTGATCACATGAAATTAATGTATGTTGGATCTATATGCTCACGATGTAATATGAATTCATGTTAGGTAGATTATTGCGAGAAGTTAAGCCTGAATTGATGGATGGTTTAATTCAGGCAACAAAAGATGGAGACCAAACTAAATTTCAGGCTTTATCTGGTTCGGAACTTTCGGCTACCGAAGATGTTGATGAGGAAGTTGAAGAGACTGAATATGAGGATGACGAAGAGGTATGTCATAATCTCACTCCTCATTTTGGGGATCAAATTTCTTTGGCTGCTTTACTGTGTTTAAAGTTATGACTGAGCACAAGAAACTACAATCGCGAATCTATTTCCATGAAAAATGAACAAGTATGAGAACAACTGTTCTGCTCGTCTGTTTAATAAAAGAGCTGATTACGAAACCTGCATAATGTGGGTTAGATAACATAACAGGACAACAATTTAAATTTTACTTGGGAACTAATTTCAGGACTGCAATTGAAAGTTTGAAGTTCTCTTTTTCTTGTGCTTATTTTCAGAGTTCTGAGGACAATATTGCTTTAGCCGATAGATGGTTTGATGGCTTGGTCAATAAGGACGTTGACATCTCTAAAGAAATCTATTCTCTAAGTGAGGTTGATTTTGATCG-CCAGGTTAGTTCAGATGTTATACGCAGGTCTGGAATTATCTTCTTTTTTGGATTTTCTGGTGTATAAGTTGAATTGACACATAATTTTATGATTTTCATGCTCAATCTCTTCTTGTATATGTTCATTTCAAAAGACAAATAATCGGTAAAGGAAAACTAGTAATGAAGAATTAATATGGACAGATCAGTATTTCAGGCTGTCAAATGTGCACCCTGACCTTAAATGACATAGTTGTTAGCTTAGTTAACTGCGCGTTTCATTACAATTAGCTTAAAGGTGTCAACAATTTACTTGTGCTGTTTTTATGGAATAAGCTGCCCGTACTTGAGATATTAAAGAAAAATTATGTGTCTTTTGTATGTAAATTATAATTTGCTTGTCTTGCCATGGTATAATATTTATCTGATTATGTTCTATCTCGTTGTACAGGAGTTACGTGGTCTTGTTAGGAATGTACAATCAATA</genome_strand>
        <mrna_strand>CAAAAATGGCTAATGTAATGAAGCCTCTGATGAATTGGCCAAAATGGCATCACTATTTATACGTTCGCGCTTCATTCATCCACTTTGTTCAATCTCAATCTCAATCTCCACTCTTCTCAACCTGCAATGTTCGCCGACTGCCGTCGTTCACGGCATCACCTTCCGGTTACCGGCAAGCTCATTTTCGTTCCGGCGCGGCACTTAAATCACGTGAAAGTCCATTACCGTTAGATCAATCAGAGGGCGACAGCGATTCCGATGAAAAAACAAGGAAGAGTCGTAACGAGAAGAAGCGTGAAGCTCGACGCGCCGTCCGGTGGGCTATGGATTTAGCTAAGTTCTCTGCTCCTCAAATTAAGCGCATTCTCAG....................................................................AGTGGCTTCAACGGAGCAAGAGGTATACGAAGCCGTTATGCTGGCCAAG.....................................................................................AGACTAGGTCCTGATGTACGAGAAGGAAAGCGAAGGCAATTCAGTTACATAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATTATTGCGAGAAGTTAAGCCTGAATTGATGGATGGTTTAATTCAGGCAACAAAAGATGGAGACCAAACTAAATTTCAGGCTTTATCTGGTTCGGAACTTTCGGCTACCGAAGATGTTGATGAGGAAGTTGAAGAGACTGAATATGAGGATGACGAAGAG.....................................................................................................................................................................................................................................................................................................AGTTCTGAGGACAATATTGCTTTAGCCGATAGATGGTTTGATGGCTTGGTCAATAAGGACGTTGACATCTCTAAAG-AATCTATTCTCTAAGTGAGGTTGATTTTGATCGCCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GAG-TACGTGGTCTTGTTAGGAATGTACAATCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284730" ref_strand="+" ref_description="SGN-E284730 [cLES-3-C5]">
      <seq>gactgccgacgttcacggtatcaccttccggttaccggcaagctcattttcgttcacggcgcggcacttaaatcacgtgaaagtccattaccgttagatcaatcagagggcgacagcgattccgatgaaaaaacaaggaagagtcgcaacgagaagaagcgtgaagctcgacgcgccgtccggtgggctatggatttagctaagatctctgctcctcaaattaagcgcattctcagagtggcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="15485" stop="14649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15185" g_stop="14951" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14950" i_stop="14883" i_length="68">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14882" g_stop="14874" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="245" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E284730" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15185" e_stop="14951"/>
          <exon e_start="14882" e_stop="14874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGCCGTCGTTCACGGCATCACCTTCCGGTTACCGGCAAGCTCATTTTCGTTC-CGGCGCGGCACTTAAATCACGTGAAAGTCCATTACCGTTAGATCAATCAGAGGGCGACAGCGATTCCGATGAAAAAACAAGGAAGAGTCGTAACGAGAAGAAGCGTGAAGCTCGACGCGCCGTCCGGTGGGCTATGGATTTAGCTAAGTTCTCTGCTCCTCAAATTAAGCGCATTCTCAGGTAATTAGATAACTTTCTAGTTACAATTGACTAAATGATATAAGTTAATGTTTCATATTTCACTGTAGAGTGGCTTC</genome_strand>
        <mrna_strand>GACTGCCGACGTTCACGGTATCACCTTCCGGTTACCGGCAAGCTCATTTTCGTTCACGGCGCGGCACTTAAATCACGTGAAAGTCCATTACCGTTAGATCAATCAGAGGGCGACAGCGATTCCGATGAAAAAACAAGGAAGAGTCGCAACGAGAAGAAGCGTGAAGCTCGACGCGCCGTCCGGTGGGCTATGGATTTAGCTAAGATCTCTGCTCCTCAAATTAAGCGCATTCTCAG....................................................................AGTGGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691575" ref_strand="+" ref_description="SGN-E691575 [LH_Ea06H13]">
      <seq>cccgtaataaccaaattcttctagaacaattattccaaatctacggcttcttcttcttttcttctctccacttcaattaccggctctaaactctccgccgctgcaccaccgcggagttctgttagcttcaagcagcggccgttctctgtttccgccgcgtgctccactgcggagaggacttctactgctactactagtagctctacaatcgcctcacatacatcgttatacgaagttttagggattcaatttggagctaattcacatgaaattaagtctgcttaccggaaattagccagaattttgcatccggatgttcgtaattcgtcggcggaggactttataagagtccaatcagcgtatgctactctttccgatccggaaaaacgtgctaattatgatcggaacctatttggaaatagacttgcaaggcctgttggtttctcaccggcgggagctcgcagccattatactgttcgccgaggatgggaaaccgatcagtgttggtagaatttttcgaaatctctcgcccgattagtcacaaaatttagctgagcacgacttaatttctgatcgtaactcaaatctgaaatttcttataacgataatagatccgttatttgtacagtacatgtaaatgtgactttatgtatataatactttaaagttttgttatgttatttgggattaagataatattagaatttacaatatacttacctttttttttttgtaaccacataaataatctttaatatttagtccaaatactattacgtacgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="18886" stop="17441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18586" g_stop="17889" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17888" i_stop="17827" i_length="62">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17826" g_stop="17741" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="786" r_length="90" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E691575" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18586" e_stop="17889"/>
          <exon e_start="17826" e_stop="17741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACCACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGACCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAAATTTGTTATGTGATTTGGGATTAAGATAAATAATCAGACTATGTTTTTGAAGTCTGAAAGTTCATCAAAATTGTTCACTCAACATTTGTATTATTAGAATTTACGATATACTTACC---TTTTTTTTATAACCACATAAATAATCTTTAATATTTAGT-CAAATACTATTACGTACGTAAT</genome_strand>
        <mrna_strand>CCCGTAA-TAACCAAATTCTTCTAGAACAATTATTCCAAATCTACGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTGCTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCACATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCGGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGACTTGCAAGGCCTGTTGGTTTCTCACCGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCTCGCCCGATTAGTCACAAAATTTAGCTGAGCACGACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAAT-AGATCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAGTTTTGTTATGTTATTTGGGATTAAGATAA..............................................................TATTAGAATTTACAATATACTTACCTTTTTTTTTTTGTAACCACATAAATAATCTTTAATATTTAGTCCAAATACTATTACGTACGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238093" ref_strand="+" ref_description="SGN-E238093 [cLED-22-E20]">
      <seq>cggaacctatttggaaatagaattgcaaggcctgttgatttctcaacggcgggagctcgcagccattatactgttcgccgaggatgggaaaccgatcagtgttggtagaatttttcgaaatctcccgcccgattagtcacaaaatttagatgagcaccacttaatttctgatcgtaactcaaatctgaaatttcttataacgataataagacccgttatttgtacagtacatgtaaatgtgactttatgtatataatactttaaaaatttgttatgtgatttgggattaagataaataatcagactatgtttttgaagtctgaaagttcatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="18483" stop="17548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18183" g_stop="17841" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E238093" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18183" e_stop="17841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACCACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGACCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAAATTTGTTATGTGATTTGGGATTAAGATAAATAATCAGACTATGTTTTTGAAGTCTGAAAGTTCATCAAAATTGTTCA</genome_strand>
        <mrna_strand>CGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACCACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGACCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAAATTTGTTATGTGATTTGGGATTAAGATAAATAATCAGACTATGTTTTTGAAGTCTGAAAGTTCATCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732451" ref_strand="+" ref_description="SGN-E732451 [LB02AH02]">
      <seq>aacattcactcacacgctattattttctccaataactaaccaaattcttctagaacaattattccaaatctatggcttcttcttcttttcttctctccacttcaattaccggctctaaactctccgccgctgcaccaccgcggagttctgttagcttcaagcagcggccgttctctgtttccgccgcgtactccactgcggagaggacttctactgctactactagtagctctacaatcgcctcacatacatcgttatacgaagttttagggattcaatttggagctaattctcatgaaattaagtctgcttaccggaaattagccagaattttgcatccggatgttcgtaattcgtcggcggaggactttataagagtccaatcagcgtatgctactctttccgatccggaaaaacgtgctaattatgatcggaacctatttggaaatagaattgcaaggcctgttggtttctcaccggcgggagctcgcagccattatactgttcgccgaggatgggaaaccgatcagtgttggtagaatttttcgaaatctcccgcccgattagtcacaaaatttagatgagcacgacttaatttctgatcgtaactcaaatctgaaatttcttataacgataataagatccgttatttgtacagtacatgtaaatgtgactttatgtatataatactttaaaattttgttatgttatttgggattaagataaataatcagactacgtcaatcaacatttgtattattagaatttacaatatacttaccttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="18914" stop="17495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18614" g_stop="17878" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E732451" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18614" e_stop="17878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTCACTCACACGCTATTATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACCACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGACCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAAATTTGTTATGTGATTTGGGATTAAGATAAATAATCAGACT</genome_strand>
        <mrna_strand>AACATTCACTCACACGCTATTATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCGGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGGTTTCTCACCGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACGACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGATCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAATTTTGTTATGTTATTTGGGATTAAGATAAATAATCAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712963" ref_strand="+" ref_description="SGN-E712963 [FB06BC12]">
      <seq>ccgccgcgtactccactgcggagaggacttctactgctactactagtagctctacaatcgcctcacatacatcgttatacgaagttttagggattcaatttggagctaattctcatgaaattaagtctgcttaccggaaattagccagaattttgcatccggatgttcgtaattcgtcggcggaggactttataagagtccaatcagcgtatgctactctttccgatccggaaaaacgtgctaattatgatcggaacctatttggaaatagaattgcaaggcctgttggtttctcaccggcgggagctcgcagccattatactgttcgccgaggatgggaaaccgatcagtgttggtagaatttttcgaaatctcccgcccgattagtcacaaaatttagatgagcacgacttaatttctgatcgtaactcaaatctgaaatttcttataacgataataagatccgttatttgtacagtacatgtaaatgtgactttatgtatataatactttaaaattttgttatgttatttgggattaagataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="18734" stop="17580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18434" g_stop="17879" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E712963" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18434" e_stop="17879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACCACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGACCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAAATTTGTTATGTGATTTGGGATTAAGATAAATAATCAGAC</genome_strand>
        <mrna_strand>CCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCGGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGGTTTCTCACCGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACGACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGATCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAATTTTGTTATGTTATTTGGGATTAAGATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712706" ref_strand="+" ref_description="SGN-E712706 [FB05CD05]">
      <seq>ccgccgcgtactccactgcggagaggacttctactgctactactagtagctctacaatcgcctcacatacatcgttatacgaagttttagggattcaatttggagctaattctcatgaaattaagtctgcttaccggaaattagccagaattttgcatccggatgttcgtaattcgtcggcggaggactttataagagtccaatcagcgtatgctactctttccgatccggaaaaacgtgctaattatgatcggaacctatttggaaatagaattgcaaggcctgttggtttctcaccggcgggagctcgcagccattatactgttcgccgaggatgggaaaccgatcagtgttggtagaatttttcgaaatctcccgcccgattagtcacaaaatttagatgagcacgacttaatttctgatcgtaactcaaatctgaaatttcttataacgataataagatccgttatttgtacagtacatgtaaatgtgactttatgtatataatactttaaaattttgttatgttatttgggattaagataaaaaataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="18734" stop="17580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18434" g_stop="17879" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E712706" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18434" e_stop="17879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACCACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGACCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAAATTTGTTATGTGATTTGGGATTAAGATAAATAATCAGAC</genome_strand>
        <mrna_strand>CCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCGGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGGTTTCTCACCGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACGACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGATCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAATTTTGTTATGTTATTTGGGATTAAGATAAAAAATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733832" ref_strand="+" ref_description="SGN-E733832 [LB11AC07]">
      <seq>ttctctcacacgctattattttctccaataactaaccaaattcttctagaacaattattccaaatctatggcttcttcttcttttcttctctccacttcaattaccggctctaaactctccgccgctgcaccaccgcggagttctgttagcttcaagcagcggccgttctctgtttccgccgcgtactccactgcggagaggacttctactgctactactagtagctctacaatcgcctcacatacatcgttatacgaagttttagggattcaatttggagctaattctcatgaaattaagtctgcttaccggaaattagccagaattttgcatccggatgttcgtaattcgtcggcggaggactttataagagtccaatcagcgtatgctactctttccgatccggaaaaacgtgctaattatgatcggaacctatttggaaatagaattgcaaggcctgttggtttctcaccggcgggagctcgcagccattatactgttcgccgaggatgggaaaccgatcagtgttggtagaatttttcgaaatctcccgcccgattagtcacaaaatttagatgagcacgacttaatttctgatcgtaactcaaatctgaaatttcttataacgataataagatccgttatttgtacagtacatgtaaatgtgactttatgtatataatactttaaaattttgttatgttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="18910" stop="17605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18610" g_stop="17903" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="708" r_length="708" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E733832" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18610" e_stop="17903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCACACGCTATTATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACCACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGACCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAAATTTGTTATGTGATT</genome_strand>
        <mrna_strand>TTCTCTCACACGCTATTATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCGGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGGTTTCTCACCGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACGACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGATCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAATTTTGTTATGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734859" ref_strand="+" ref_description="SGN-E734859 [LB13DB07]">
      <seq>ttcactcacacgctattattttctccaataactaaccaaattcttctagaacaattattccaaatctatggcttcttcttcttttcttctctccacttcaattaccggctctaaactctccgccgctgcaccaccgcggagttctgttagcttcaagcagcggccgttctctgtttccgccgcgtactccactgcggagaggacttctactgctactactagtagctctacaatcgcctcacatacatcgttatacgaagttttagggattcaatttggagctaattctcatgaaattaagtctgcttaccggaaattagccagaattttgcatccggatgttcgtaattcgtcggcggaggactttataagagtccaatcagcgtatgctactctttccgatccggaaaaacgtgctaattatgatcggaacctatttggaaatagaattgcaaggcctgttggtttctcaccggcgggagctcgcagccattatactgttcgccgaggatgggaaaccgatcagtgttggtagaatttttcgaaatctcccgcccgattagtcacaaaatttagatgagcacgacttaatttctgatcgtaactcaaatctgaaatttcttataacgataataagatccgttatttgtacagtacatgtaaatgtgactttatgtatataatactttaaaattttgttatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="18910" stop="17605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18610" g_stop="17905" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E734859" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18610" e_stop="17905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCACACGCTATTATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACCACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGACCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAAATTTGTTATGTGA</genome_strand>
        <mrna_strand>TTCACTCACACGCTATTATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCGGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGGTTTCTCACCGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACGACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGATCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAATTTTGTTATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695415" ref_strand="+" ref_description="SGN-E695415 [LH_Ea06H13](-)">
      <seq>aacatatcaaagcttttaagtattatatacatatagtcacattttcatgtactgtacaaatagcggatctattatcgttataagaaatttcagatttgagttttgatcagaaattaagtcgtgctcagctaaatcttgtgcactaatcgggcgagagatttcgaaaaattcttccaactctgatcggtttcccatcctcggcgaacagtataatggttgcgagctcccgccggttgagtatccaacaggccttgcaagtctatttccaaataggttccgatcataattagcgcgtttttccggatcggaaagagtagcattcgctgattggactcttataaagtcctcctccgaagaattacgatcatccggatgcaaaattttggttaatttccggtaagcagacttaatttcatgtgaattagctccaaatggaatccataaaactttgtatagcgatgtatgtgaggtgattgtagagctgttagtagtatcagtagaagtcctgtccgcagtggagcacgcgtcgtaaacagagatcggccgttccttgaagctaacagatctcttgcggtggtgcagcggcggagagtttagagccggtaattatagtggagagaagaaaagaagaagaagccatagatttggaataattgttttagaagaatttggtttgttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="17607" stop="18881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17906" g_stop="18583" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E695415" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17906" e_stop="18583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATAACAAATTTTTAAAGTATTATATACATAAAGTCACATTTACATGTACTGTACAAATAACGGGTCTTATTATCGTTATAAGAAATTTCAGATTTGAGTTACGATCAGAAATTAAGTGGTGCTCATCTAAATTTTGTG-ACTAATCGGGCGGGAGATTTCGAAAAATTCTACCAACACTGATCGGTTTCCCATCCTCGGCGAACAGTATAATGGCTGCGAGCTCCCGCC-GTTGAGAAATCAACAGGCCTTGCAATTCTATTTCCAAATAGGTTCCGATCATAATTAGCACGTTTTTCCGGATCGGAAAGAGTAGCATACGCTGATTGGACTCTTATAAAGTCCTCCGCCGACGAATTACGAACATCTGGATGCAAAATTCTGGCTAATTTCCGGTAAGCAGACTTAATTTCATGAGAATTAGCTCCAAATTGAATCCCTAAAACTTCGTATAACGATGTATGTGAGGCGATTGTAGAGCTACTAGTAGTAGCAGTAGAAGTCCTCTCCGCAGTGGAGTACGCGGCGGAAACAGAGAACGGCCGCTGCTTGAAGCTAACAGAACTC-CGCGGTGGTGCAGCGGCGGAGAGTTTAGAGCCGGTAATTGAAGTGGAGAGAAGAAAAGAAGAAGAAGCCATAGATTTGGAATAATTGTTCTAGAAGAATTTGGTTAGTTAT</genome_strand>
        <mrna_strand>AACATATCAAAGCTTTTAAGTATTATATACATATAGTCACATTTTCATGTACTGTACAAATAGCGGATC-TATTATCGTTATAAGAAATTTCAGATTTGAGTTTTGATCAGAAATTAAGTCGTGCTCAGCTAAATCTTGTGCACTAATCGGGCGAGAGATTTCGAAAAATTCTTCCAACTCTGATCGGTTTCCCATCCTCGGCGAACAGTATAATGGTTGCGAGCTCCCGCCGGTTGAGTATCCAACAGGCCTTGCAAGTCTATTTCCAAATAGGTTCCGATCATAATTAGCGCGTTTTTCCGGATCGGAAAGAGTAGCATTCGCTGATTGGACTCTTATAAAGTCCTCCTCCGAAGAATTACGATCATCCGGATGCAAAATTTTGGTTAATTTCCGGTAAGCAGACTTAATTTCATGTGAATTAGCTCCAAATGGAATCCATAAAACTTTGTATAGCGATGTATGTGAGGTGATTGTAGAGCTGTTAGTAGTATCAGTAGAAGTCCTGTCCGCAGTGGAGCACGCGTCGTAAACAGAGATCGGCCGTTCCTTGAAGCTAACAGATCTCTTGCGGTGGTGCAGCGGCGGAGAGTTTAGAGCCGGTAATTATAGTGGAGAGAAGAAAAGAAGAAGAAGCCATAGATTTGGAATAATTGTTTTAGAAGAATTTGGTTTGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217024" ref_strand="+" ref_description="SGN-E217024 [cLEL-1-I14](-)">
      <seq>ggcacaaggctactctttccgatccggaaaaacgtgctaattatgatcggaacctatttggaaatagaattgcaaggcctgttgatttctcaacggcgggagctcgcagccattatactgttcgccgaggatgggaaaccgatcagtgttggtagaatttttcgaaatctcccgcccgattagtcacaaaatttaagatgagccccacttaatttctgatcgtaactcaaatctgaaatttcttataacgataataagacccgttatttgtacagtacatgtaaatgtgactttacgtatataatactttaaaaatttgttatgtgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="18524" stop="17605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18232" g_stop="17906" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="327" polyA_stop="347"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E217024" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18232" e_stop="17906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTT-AGATGAGCACCACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGACCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAAATTTGTTATGTG</genome_strand>
        <mrna_strand>GGCA-C-AAGGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAAGATGAGCCCCACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGACCCGTTATTTGTACAGTACATGTAAATGTGACTTTACGTATATAATACTTTAAAAATTTGTTATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732247" ref_strand="+" ref_description="SGN-E732247 [LB01CF08]">
      <seq>attcactcacacgctattattttctccaataactaaccaaattcttctagaacaattattccaaatctatggcttcttcttcttttcttctctccacttcaattaccggctctaaactctccgccgctgcaccaccgcggagttctgttagcttcaagcagcggccgttctctgtttccgccgcgtactccactgcggagaggacttctactgctactactagtagctctacaatcgcctcacatacatcgttatacgaagttttagggattcaatttggagctaattctcatgaaattaagtctgcttaccggaaattagccagaattttgcatccggatgttcgtaattcgtcggcggaggactttataagagtccaatcagcgtatgctactctttccgatccggaaaaacgtgctaattatgatcggaacctatttggaaatagaattgcaaggcctgttggtttctcaccggcgggagctcgcagccattatactgttcgccgaggatgggaaaccgatcagtgttggtagaatttttcgaaatctcccgcccgattagtcacaaaatttagatgagcacgacttaatttctgatcgtaactcaaatctgaaatttcttataacgataataagatccgttatttgtacagtacatgtaaatgtgactttatgtatataatactttaaaattttgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="18911" stop="17610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18611" g_stop="17911" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="702" polyA_stop="718"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E732247" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18611" e_stop="17911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACTCACACGCTATTATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACCACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGACCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAAATTTGTT</genome_strand>
        <mrna_strand>ATTCACTCACACGCTATTATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCGGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGGTTTCTCACCGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACGACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGATCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAATTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732339" ref_strand="+" ref_description="SGN-E732339 [LB01DF05]">
      <seq>caatttcttctagaacaattattccaaatctatggcttcttcttcttttcttctctccacttcaattaccggctctaaactctccgccgctgcaccaccgcggagttctgttagcttcaagcagcggccgttctctgtttccgccgcgtactccactgcggagaggacttctactgctactactagtagctctacaatcgcctcacatacatcgttatacgaagttttagggattcaatttggagctaattctcatgaaattaagtctgcttaccggaaattagccagaattttgcatccggatgttcgtaattcgtcggcggaggactttataagagtccaatcagcgtatgctactctttccgatccggaaaaacgtgctaattatgatcggaacctatttggaaatagaattgcaaggcctgttggtttctcaccggcgggagctcgcagccattatactgttcgccgaggatgggaaaccgatcagtgttggtagaatttttcgaaatctcccgcccgattagtcacaaaatttagatgagcacgacttaatttctgatcgtaactcaaatctgaaatttcttataacgataataagatccgttatttgtacagtacatgtaaatgtgactttatgtatataatactttaaaattttgttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="18874" stop="17610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18574" g_stop="17911" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="679"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E732339" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18574" e_stop="17911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACCACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGACCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAAATTTGTT</genome_strand>
        <mrna_strand>CAATTTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCGGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGGTTTCTCACCGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACGACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGATCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAATTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278051" ref_strand="+" ref_description="SGN-E278051 [cLER-4-G5]">
      <seq>tattttctccaataactaaccaaattcttctagaacaattattccaaatctatggcttcttcttcttttcttctctccacttcaattaccggctctaaactctccgccgctgcaccaccgcggagttctgttagcttcaagcagcggccgttctctgtttccgccgcgtactccactgcggagaggacttctactgctactactagtagctctacaatcgcctcacatacatcgttatacgaagttttagggattcaatttggagctaattctcatgaaattaagtctgcttaccggaaattagccagaattttgcatccagatgttcgtaattcgtcggcggaggactttataagagtccaatcagcgtatgctactctttccgatccggaaaaacgtgctaattatgatcggaacctatttggaaatagaattgcaaggcctgttgatttctcaacggcgggagctcgcagccattatactgttcgccgaggatgggaaaccgatcagtgttggtagaatttttcgaaatctcccgcccgattagtcacaaaatttagatgagcaccacttaatttctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="18894" stop="17711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18594" g_stop="18011" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E278051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18594" e_stop="18011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACCACTTAATTTCTGATC</genome_strand>
        <mrna_strand>TATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACCACTTAATTTCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203759" ref_strand="+" ref_description="SGN-E203759 [cLEC-17-K18]">
      <seq>acgctattattttctccaataactaaccaaattcttctagaacaattattccaaatctatggcttcttcttcttttcttctctccacttcaattaccggctctaaactctccgccgctgcaccaccgcggagttctgttagcttcaagcagcggccgttctctgtttccgccgcgtactccactgcggagaggacttctactgctactactagtagctctacaatcgcctcacatacatcgatatacgaagttttagggattcaattcggagctaattctcatgaaattaagtctgcttaccggaaattagccagaattttgcatccagatgttcgtaattcgtcggcggaggactttataagagtccaatcatcgtatgctactctttccgatccggaaaaacgtgctaattatgatcggaacctatttggaaatagaattgcaaggcctgttgatttctcaacggcgggagctcgcagccattatactgttcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="18901" stop="17806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18601" g_stop="18106" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E203759" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18601" e_stop="18106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCTATTATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCGC</genome_strand>
        <mrna_strand>ACGCTATTATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGATATACGAAGTTTTAGGGATTCAATTCGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCATCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615823" ref_strand="+" ref_description="SGN-E615823 [65626]">
      <seq>atcattttctccaataactaaccaaattcttctagaacaattattccaaaatcatggcttcttcttcttttcttctctccacttcaattgccggctctaaactctccgccgctgcaccaccgccgagtgccgttagtttccggcagcggccgttctctgtttccgccgcttactccactgcggagaggacttctactactactactagctctacaatagcctcacatacatcgttatacgaagtcccagggattcaaataggagctaattctcatgaaattaaatctgcttaccggaacttagccagaattctgcatccggatgttcagaattcgtcggcggaggactttattagagttcaatcagcatatgctactctttccgacccggaaaaacgtgctaattatgatcggaaactatttgggaatagaattgcaaggcctgttgatttctcaccggcaggtgctcgtagccattatactgttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="18896" stop="17807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18596" g_stop="18107" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E615823" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18596" e_stop="18107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCG</genome_strand>
        <mrna_strand>ATCATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAAATCATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTGCCGGCTCTAAACTCTCCGCCGCTGCACCACCGCCGAGTGCCGTTAGTTTCCGGCAGCGGCCGTTCTCTGTTTCCGCCGCTTACTCCACTGCGGAGAGGACTTCTA---CTACTACTACTAGCTCTACAATAGCCTCACATACATCGTTATACGAAGTCCCAGGGATTCAAATAGGAGCTAATTCTCATGAAATTAAATCTGCTTACCGGAACTTAGCCAGAATTCTGCATCCGGATGTTCAGAATTCGTCGGCGGAGGACTTTATTAGAGTTCAATCAGCATATGCTACTCTTTCCGACCCGGAAAAACGTGCTAATTATGATCGGAAACTATTTGGGAATAGAATTGCAAGGCCTGTTGATTTCTCACCGGCAGGTGCTCGTAGCCATTATACTGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203842" ref_strand="+" ref_description="SGN-E203842 [cLEC-17-K17]">
      <seq>acgctattattttctccaataactaaccaaattcttctagaacaattattccaaatctatggcttcttcttcttttcttctctccacttcaattaccggctctaaactctccgccgctgcaccaccgcggagttctgttagcttcaagcagcggccgttctctgtttccgccgcgtactccactgcggagaggacttctactgctactactagtagctctacaatcgcctcacatacatcgatatacgaagttatagggattcaattcggagctaattctcatgaaattaagtctgcttaccggaaattagccagaattttgcatccagatgttcgtaattcgtcggcggaggactttataagagtccaatcagcgtatgctactctttccgatccggaaaaacgtgctaattatgatcggaacctatttggaaatagaattgcaaggcctgttgatttctcaacggcgggagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="18901" stop="17826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18601" g_stop="18126" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E203842" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18601" e_stop="18126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCTATTATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTC</genome_strand>
        <mrna_strand>ACGCTATTATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGATATACGAAGTTATAGGGATTCAATTCGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284586" ref_strand="+" ref_description="SGN-E284586 [cLES-3-E21]">
      <seq>ttctccaataactaaccaaattcttctagaacaattattccaaatctatggcttcttcttcttttcttctctccacttcaattaccggctctaaactctccgccgctgcaccaccgcggagttctgttagcttcaagcagcggccgttctctgtttccgccgcgtactccactgcggagaggacttctactgctactactagtagctctacaatcgcctcacatacatcgttatacgaagttttagggattcaatttggagctaattctcatgaaattaagtctgcttaccggaaattagccagaattttgcatccagatgttcgtaattcgtcggcggaggactttataagagtccaatcagcgtatgctactctttccgatccggaaaaacgtgctaattatgatcggaacctatttggaaataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="18890" stop="17863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18590" g_stop="18163" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E284586" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18590" e_stop="18163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGA</genome_strand>
        <mrna_strand>TTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294777" ref_strand="+" ref_description="SGN-E294777 [cLET-17-F7]">
      <seq>acattcactcacacgctattattttctccaataactaaccaaattcttctagaacaattattccaaatctatggcttcttcttcttttcttctctccacttcaattaccggctctaaactctccgccgctgcaccaccgcggagttctgttagcttcaagcagcggccgttctctgtttccgccgcgtactccactgcggagaggacttctactgctactactagtagctctacaatcgcctcacatacatcgttatacgaagttttagggattcaatttggagctaattctcatgaaattaagtctgcttaccggaaattagccagaattttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="18913" stop="17977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18613" g_stop="18277" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E294777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18613" e_stop="18277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTCACTCACACGCTATTATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCAT</genome_strand>
        <mrna_strand>ACATTCACTCACACGCTATTATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320243" ref_strand="+" ref_description="SGN-E320243 [cTOB-21-M8]">
      <seq>tttacaatttctacttttgttagtgtccattcaaaactacttcactttgattgggttgtttcaatttcctctaatgcactcattggagatcctaaagaggttattatgatcaataatcagtttccagggccccttttgaacacaacaacaaatgatgtggtcattgtcaatgtttataacaacttgactgaacctttcctcatgacatggaatggagtgcaattaaggaggaattcatggcaagatggagttgaaggaaccaattgtccaattatgcctggaaaaaattggacatacaaatttcagatgaaagatcagattggaagtttcttctattttccttcactctttttccagaaagctgctggaggctatggtcctattcgaatcaacaacgttgagactgttcctcttccatttacgcgtcctgattatgaatatgatatactaattggagattggtattttgatgagtataaggacttgagaatttctctagaagatggatgcaaaatgccttttccagatgccattctcatcaatggtatgagatctgatcaagctacctttgagtttcaacccgcgggctacctatagattgagaatctcgcacataggattaaaaacaaccttaaatttcaaaatccaggatcatgaaatgcttttggtggagactgnaggagcctacacttncaaaaagtaccaccaaagtctagacatccatgttggtcaatcttattctgttcttgttactgcaaagaacacagctataatagctcgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="26011" stop="23713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25711" g_stop="25613" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25612" i_stop="25503" i_length="110">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25502" g_stop="25393" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="209" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25392" i_stop="24952" i_length="441">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24951" g_stop="24681" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="480" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24680" i_stop="24590" i_length="91">
            <donor d_prob="0.501" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24589" g_stop="24487" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="583" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24486" i_stop="24214" i_length="273">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24213" g_stop="24013" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="784" r_length="201" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E320243" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25711" e_stop="25613"/>
          <exon e_start="25502" e_stop="25393"/>
          <exon e_start="24951" e_stop="24681"/>
          <exon e_start="24589" e_stop="24487"/>
          <exon e_start="24213" e_stop="24013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACAATTTCTACTTTTGTTAGTGTCCATTCAAAACTACTTCACTTTGATTGGGTTGTTTCAATTTCCTCTAATGCACTCATTGGAGATCCTAAAGAGGTCACTTTGTTTTAGTATTTTTTTTCTTAACCTCAATTTTTTTTTGTTAATTATGTTTTTTTTAAAGAATATTTAAAATAACTATTTTTTTTTTGTGATGGTGAAAACAGGTTATTATGATCAATAATCAGTTTCCAGGGCCCCTTTTGAACACAACAACAAATGATGTGGTCATTGTCAATGTTTATAACAACTTGACTGAACCTTTCCTCATGACATGGTAATTTATTTAATATTTTTGTTAGTTATTTCTAAGTATGTTTTATGACCATTCATACGTCAGCGGTGGATATAGGACGAGTTCTGTGGGTTCAATTAAACTCGTTGCTTTTAACTTGAACTAAGTATACATACACGATTTTTAACGATATTGCATATATGTAATGAAAGTCAACATGTAGGGACTACAGAAAATGCAACTATTGAGACAACTCAAAAATAAAATTAGTGAGGTAAGGTCAAGCTCGGAAAATGATTCAATGGATTCGAAAGAATAAATTTTGCTCTGCATGAATCAAGTTCTTCCATGAGACTATGATCATACTCATTTTGCTCGTTAAGTGTTAACTGTATTCTGAATTTGTCTCTGATACATTCATGATTTCTTTAGAACAACTTATATTCAATGATCTTTAACTTAAAATATTGCGAAAACTATAAGGAATGGAGTGCAATTAAGGAGGAATTCATGGCAAGATGGAGTTGAAGGAACCAATTGTCCAATTATGCCTGGAAAAAATTGGACATACAAATTTCAGATGAAAGATCAGATTGGAAGTTTCTTCTATTTTCCTTCACTCTTTTTCCAGAAAGCTGCTGGAGGCTATGGTCCTATTCGAATCAACAACGTTGAGACTGTTCCTCTTCCATTTACGCGTCCTGATTATGAATATGATATACTAATTGGAGATTGGTATTTTGATGAGTATAAGGTATGTGTAAAGTCGTAACATAAGTATAAATGCTATAGATTATGAAAATGCACAATGTAGTTTAGTTGTAACCTTAATTGTTTTTGTGAAGGACTTGAGAATTTCTCTAGAAGATGGATGCAAAATGCCTTTTCCAGATGCCATTCTCATCAATGGTATGAGATCTGATCAAGCTACCTTTGAGTTTCAACCCGGTAAGTTTACGTTTGTATAGAGAATTACCAACAGTTGTAAGATCTGCGTACACTCTACTCTTCTCAGACCCCACCTAGTGAGATTTCACCGGGTATGTTGTTGTGGGACCGAGGTGTAGTTGTGCGATTTTTAAATCCTTTTGACATAAACAAAGCATTTTGTGTAGTCATAAAGGTACTAGCTCGTGTTCGTATCTTAGGTGGTTCTGAATCCCCTTGTTGAAAATCCTGATTCCGTCTAATGACATTTTGGTTTCTCTGTTTCGTCTTCAG-GGGCTACCTATAGATTGAGAATCTCGAACATAGGATTAAAAACAACCTTAAATTTCAAAATCCAGGATCATGAAATGCTTTTGGTGGAGACTGAAGGAGCCTACACTTCAAAAAAGTACCACCAAAGTCTAGACATCCATGTTGGTCAATCTTATTCTGTTCTTGTTACTGCAAAGAACCACAGCTATAATAGCTCGTATC</genome_strand>
        <mrna_strand>TTTACAATTTCTACTTTTGTTAGTGTCCATTCAAAACTACTTCACTTTGATTGGGTTGTTTCAATTTCCTCTAATGCACTCATTGGAGATCCTAAAGAG..............................................................................................................GTTATTATGATCAATAATCAGTTTCCAGGGCCCCTTTTGAACACAACAACAAATGATGTGGTCATTGTCAATGTTTATAACAACTTGACTGAACCTTTCCTCATGACATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGAGTGCAATTAAGGAGGAATTCATGGCAAGATGGAGTTGAAGGAACCAATTGTCCAATTATGCCTGGAAAAAATTGGACATACAAATTTCAGATGAAAGATCAGATTGGAAGTTTCTTCTATTTTCCTTCACTCTTTTTCCAGAAAGCTGCTGGAGGCTATGGTCCTATTCGAATCAACAACGTTGAGACTGTTCCTCTTCCATTTACGCGTCCTGATTATGAATATGATATACTAATTGGAGATTGGTATTTTGATGAGTATAAG...........................................................................................GACTTGAGAATTTCTCTAGAAGATGGATGCAAAATGCCTTTTCCAGATGCCATTCTCATCAATGGTATGAGATCTGATCAAGCTACCTTTGAGTTTCAACCCG.................................................................................................................................................................................................................................................................................CGGGCTACCTATAGATTGAGAATCTCGCACATAGGATTAAAAACAACCTTAAATTTCAAAATCCAGGATCATGAAATGCTTTTGGTGGAGACTGNAGGAGCCTACACTTNCAAAAAGTACCACCAAAGTCTAGACATCCATGTTGGTCAATCTTATTCTGTTCTTGTTACTGCAAAGAA-CACAGCTATAATAGCTCGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319299" ref_strand="+" ref_description="SGN-E319299 [cTOB-16-D12]">
      <seq>tgcaattaaggaggaattcatggcaagatggagttgaaggaaccaattgtccaattatgcctggaaaaaattggacatacaaatttcagatgaaagatcagattggaagtttcttctattttccttcactctttttccagaaagctgctggaggctatggtcctattcgaatcaacaacgttgagactgttcctcttccatttacgcgtcctgattatgaatatgatatactaattggagattggtattttgatgagtataaggacttgagaatttctctagaagatggatgcaaaatgccttttccagatgccattctcatcaatggtatgagatctgatcaagctacctttgagtttcaacccggtaagtttacgtttgtatagagaattaccaacagttgtaagatctgcgtacactctactcttctcagaccccacctagtgagatttcaccgggtatgttgttgtgggaccgaggtgtagttgagcgatttttaaatccttttgacataaacaaagcattttgtgtagtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="25243" stop="24016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24943" g_stop="24681" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24680" i_stop="24590" i_length="91">
            <donor d_prob="0.501" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24589" g_stop="24316" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="537" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E319299" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24943" e_stop="24681"/>
          <exon e_start="24589" e_stop="24316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATTAAGGAGGAATTCATGGCAAGATGGAGTTGAAGGAACCAATTGTCCAATTATGCCTGGAAAAAATTGGACATACAAATTTCAGATGAAAGATCAGATTGGAAGTTTCTTCTATTTTCCTTCACTCTTTTTCCAGAAAGCTGCTGGAGGCTATGGTCCTATTCGAATCAACAACGTTGAGACTGTTCCTCTTCCATTTACGCGTCCTGATTATGAATATGATATACTAATTGGAGATTGGTATTTTGATGAGTATAAGGTATGTGTAAAGTCGTAACATAAGTATAAATGCTATAGATTATGAAAATGCACAATGTAGTTTAGTTGTAACCTTAATTGTTTTTGTGAAGGACTTGAGAATTTCTCTAGAAGATGGATGCAAAATGCCTTTTCCAGATGCCATTCTCATCAATGGTATGAGATCTGATCAAGCTACCTTTGAGTTTCAACCCGGTAAGTTTACGTTTGTATAGAGAATTACCAACAGTTGTAAGATCTGCGTACACTCTACTCTTCTCAGACCCCACCTAGTGAGATTTCACCGGGTATGTTGTTGTGGGACCGAGGTGTAGTTGTGCGATTTTTAAATCCTTTTGACATAAACAAAGCATTTTGTGTAGTCAT</genome_strand>
        <mrna_strand>TGCAATTAAGGAGGAATTCATGGCAAGATGGAGTTGAAGGAACCAATTGTCCAATTATGCCTGGAAAAAATTGGACATACAAATTTCAGATGAAAGATCAGATTGGAAGTTTCTTCTATTTTCCTTCACTCTTTTTCCAGAAAGCTGCTGGAGGCTATGGTCCTATTCGAATCAACAACGTTGAGACTGTTCCTCTTCCATTTACGCGTCCTGATTATGAATATGATATACTAATTGGAGATTGGTATTTTGATGAGTATAAG...........................................................................................GACTTGAGAATTTCTCTAGAAGATGGATGCAAAATGCCTTTTCCAGATGCCATTCTCATCAATGGTATGAGATCTGATCAAGCTACCTTTGAGTTTCAACCCGGTAAGTTTACGTTTGTATAGAGAATTACCAACAGTTGTAAGATCTGCGTACACTCTACTCTTCTCAGACCCCACCTAGTGAGATTTCACCGGGTATGTTGTTGTGGGACCGAGGTGTAGTTGAGCGATTTTTAAATCCTTTTGACATAAACAAAGCATTTTGTGTAGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419506" ref_strand="-" ref_description="SGN-E419506 [STM-29-B4]">
      <seq>ttgatgggttggagagtggcccaacaccggaagcgagtttggcaagaagacccctccacaagtttccntcattcgactgcagacactctaccatgcagacaaacagaaaatggattaccatgtcctcgaactagtgacatggcttcaccgtttgattagcctggtaagatttaacgggcccaaggctttcccaggacgatcaccaacacgcaaaggacttaatctgcagactgagttgatgatgaatactacctcaaaaacgcctaaggttcagatttctcttgaagataggaacttactcgagaaagtgatgaaacggaaatgtttggtccctggaagaagcaagagccaggagtttctgttgcctaagaatcggaaaaaggtgtgggcgctaagtagaagcatgggtaactcccctcgtaccgactttcaacatccaaaggctactgttttggatatattagatggcttacattagcattttgagttgctaaagagagatctcaagcaaaaaaaagttcatttttttgttttcttgattcttagctccccccttctttggaaccaaaatctctttgtatatagtctctctatcatatggtgattgggaaaattgttatactgtagcatattattatcaccaaaatacatttagattctagtggaagtgaatgttcaagggtgatagggaatgatgtttatttgggcattttgcagccaacttgcaatgaatgttttggtaatatgaagtgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="27897" stop="26084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27596" g_stop="27567" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27566" i_stop="27110" i_length="457">
            <donor d_prob="0.962" d_score="0.00"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27109" g_stop="26376" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="763" r_length="733" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E419506" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419506" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27596" e_stop="27567"/>
          <exon e_start="27109" e_stop="26376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGGGTTGGAGAGTGGGCCAACACCGGGTTAGTTCCATAAGTCTCTACATGAGCAAAATTGAATATTTACATTTGCAGTTTAGTTTGGATAGCATTCTTCAAGAATATAATATTTGGAGGCGGATGCAGCCATGCACTGTGGGTTCAATTGAACCTCGTTTATTCTATATAACATCATTTGTTTTGATATAATTTTTTGGTTGTGATAGTGAATGTTATTAATAGAGAATATATGATACAACATAACATGAACGATTGGTTCAAAGAAAATATGGTTGTTATATAGTTACATGCTTTATAGGATGCCAGATGGCTATTATAGAGAGGGCTGACTGTATATATAAGCATAATTTCAATAAATATTAGATTTTTGAACCCATAATTCAGTTGTACAATGATATCTGTTAAGGACTTCAAAAAATTGAAACATCAAAGTTTTAAATTTTCGATCAGCTTCTAATGTTATTGGTTTTTTCTCTTTCAGAAGCGAGTTTGGCAAGAAGAACCCTCCACAAGTTTCCCTCATTCGACTGCAGACACTCTACCATGCTGACAAACAGAAAATGGACTACCATGTCCTTGAACTAGTGACATGGCTTCACCGTTTGATCAGCCTGGTAAGATATAATGGGCCCAAGGCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTATATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCATGGATGACAGGGAATGATGTTTATTTGGGCATTTTGCAGCCAACTTACTATGAATGTTTTGGTAATATGAAATGTAACCATTAGG</genome_strand>
        <mrna_strand>TTGATGGGTTGGAGAGTGGCCCAACACCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAGTTTGGCAAGAAGACCCCTCCACAAGTTTCCNTCATTCGACTGCAGACACTCTACCATGCAGACAAACAGAAAATGGATTACCATGTCCTCGAACTAGTGACATGGCTTCACCGTTTGATTAGCCTGGTAAGATTTAACGGGCCCAAGGCTTTCCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAATACTACCTCAAAAACGCCTAAGGTTCAGATTTCTCTTGAAGATAGGAACTTACTCGAGAAAGTGATGAAACGGAAATGTTTGGTCCCTGGAAGAAGCAAGAGCCAGGAGTTTCTGTTGCCTAAGAATCGGAAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAA-GTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCCCCTTCTTTGGAACCAAAATCTCTTTGTATATAGTCTCTCTATCATATGGTGATTGGGAAAATTGTTATACTGTAGCATATTATTATCACCAAAATACATTTAGATTCTAGTGGAAGTGAATGTTCAAGGGTGATAGGGAATGATGTTTATTTGGGCATTTTGCAGCCAACTTGCAATGAATGTTTTGGTAATATGAAGTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483476" ref_strand="-" ref_description="SGN-E483476 [cSTE-9-H3]">
      <seq>atgcagacaaacagaaaatggactaccatgtcctcgaactagtgacatggcttcaccgtttgatcagcctggtaagatttaacgggcccaaggctttcccaggacgatcaccaacacgcaaaggacttaatctgcagactgagttgatgatgaatactacctcaaaaacgcctaaggttcagatttctcttgaagataggaacttactcgagaaagtgatgaaacggaaatgtttggttcctggaagaagcaagagccaggagtttctgttgcccaagaatcggaaaaaggtgtgggcgctaagtagaagcatgggtaactcccctcgtaccgactttcaacatccaaaggctactgttttggatatattagatggcttacattagcattttgagtttctaaagagagatctcaagcaaaaaaaagttcatttttttgttttcttgattcttagctccccccttctttggaaccaaaatctctttgtatatagtctctctatcatatggtgattgggaaaattgttatactgtagcatattattatcaccaaaatacatttagattttagtggaagtgaatgttcaagggtgatagggaatgatgtttatttgggcattttgcagccaacttgctatgaatgttttggtaatatgaagtgtaaccataagaaaaaaaaaaaaaaaaaaaactcgagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="27347" stop="26071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27047" g_stop="26382" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="671" polyA_stop="691"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E483476" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483476" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27047" e_stop="26382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGACAAACAGAAAATGGACTACCATGTCCTTGAACTAGTGACATGGCTTCACCGTTTGATCAGCCTGGTAAGATATAATGGGCCCAAGGCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTATATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCATGGATGACAGGGAATGATGTTTATTTGGGCATTTTGCAGCCAACTTACTATGAATGTTTTGGTAATATGAAATGTAACC</genome_strand>
        <mrna_strand>ATGCAGACAAACAGAAAATGGACTACCATGTCCTCGAACTAGTGACATGGCTTCACCGTTTGATCAGCCTGGTAAGATTTAACGGGCCCAAGGCTTTCCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAATACTACCTCAAAAACGCCTAAGGTTCAGATTTCTCTTGAAGATAGGAACTTACTCGAGAAAGTGATGAAACGGAAATGTTTGGTTCCTGGAAGAAGCAAGAGCCAGGAGTTTCTGTTGCCCAAGAATCGGAAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTTCTAAAGAGAGATCTCAAGCAAAAAAAA-GTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCCCCTTCTTTGGAACCAAAATCTCTTTGTATATAGTCTCTCTATCATATGGTGATTGGGAAAATTGTTATACTGTAGCATATTATTATCACCAAAATACATTTAGATTTTAGTGGAAGTGAATGTTCAAGGGTGATAGGGAATGATGTTTATTTGGGCATTTTGCAGCCAACTTGCTATGAATGTTTTGGTAATATGAAGTGTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419478" ref_strand="+" ref_description="SGN-E419478 [STM-29-N17]">
      <seq>ttgcaagttggctgcaaaatgcccaaataaacatcattccctatcacccttgaacattcacttccactagaatctaaatgtattttggtgataataatatgctacagtataacaattttcccaatcaccatatgatagagagactatatacaaagagattttggttccaaagaaggggggagctaagaatcaagaaaacaaaaaaatgaacttttttttgcttgagatctctctttagcaactcaaaatgctaatgtaagccatctaatatatccaaaacagtagcctttggatgttgaaagtcggtacgaggggagttacccatgcttctacttagcgcccacacctttttccgattcttaggcaacagaaactcctggctcttgcttcttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="26111" stop="27106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26411" g_stop="26806" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E419478" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26411" e_stop="26806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAAGTTGGCTGCAAAATGCCCAAATAAACATCATTCCCTGTCATCCATGAACATTCAATTCCACTAGAATCTAAATGTATTTTGGCGATAATAATATGCTACAGTATAACATTTTTCCCAATCACCATATGATGGAGAGACTATATACAAAGAGGCTTTAGTTCCATAGGAGGAGGGAGCTAAGAATCAAGAAAACAAAAAAATGAACCTTTTTTTTGCTTGAGATCTCTCTTTAGCAACTCAAAATGCTAATGTAAGCCATCTAATATATCCAAAACAGTAGCCTTTGGATGTTGAAAGTCGGTACGAGGGGAGTTACCCATGCTTCTACTTAGCGCCCACACCTTTTGCCGATTCTTGGGCAACAGAAACTCCTGACTCTTGCTTCTTCCA</genome_strand>
        <mrna_strand>TTGCAAGTTGGCTGCAAAATGCCCAAATAAACATCATTCCCTATCACCCTTGAACATTCACTTCCACTAGAATCTAAATGTATTTTGGTGATAATAATATGCTACAGTATAACAATTTTCCCAATCACCATATGATAGAGAGACTATATACAAAGAGATTTTGGTTCCAAAGAAGGGGGGAGCTAAGAATCAAGAAAACAAAAAAATGAA-CTTTTTTTTGCTTGAGATCTCTCTTTAGCAACTCAAAATGCTAATGTAAGCCATCTAATATATCCAAAACAGTAGCCTTTGGATGTTGAAAGTCGGTACGAGGGGAGTTACCCATGCTTCTACTTAGCGCCCACACCTTTTTCCGATTCTTAGGCAACAGAAACTCCTGGCTCTTGCTTCTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280570" ref_strand="+" ref_description="SGN-E280570 [cLER-1-M22]">
      <seq>gcttttccaggacgatcaccaacacgcaaaggacttaatctgcagactgagttgatgatgaacaccaactcaaaaacacctaagattcagatttctctcgaagataggactttactagagaaagtgatgaaacagaaatgtttggttcctggaagaagcaagagtcaggagtttctgttgcccaagaatcggcaaaaggtgtgggcgctaagtagaagcatgggtaactcccctcgtaccgactttcaacatccaaaggctactgttttggatatattagatggcttacattagcattttgagttgctaaagagagatctcaagcaaaaaaaaggttcatttttttgttttcttgattcttagctccctcctcctatggaactaaagcctctttgtttatagtctctccatcatatggtgattgggaaaaatgttatactgtagcatattattatcgccaaaatacatttagattctagtggaattgaatgttcatggatgacagggaatgatgtttatttgggaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="27255" stop="26130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26955" g_stop="26433" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="525" polyA_stop="550"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E280570" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26955" e_stop="26433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTATATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCATGGATGACAGGGAATGATGTTTATTTGG</genome_strand>
        <mrna_strand>GCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTTTATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCATGGATGACAGGGAATGATGTTTATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280571" ref_strand="+" ref_description="SGN-E280571 [cLER-1-M24]">
      <seq>gcttttccaggacgatcaccaacacgcaaaggacttaatctgcagactgagttgatgatgaacaccaactcaaaaacacctaagattcagatttctctcgaagataggactttactagagaaagtgatgaaacagaaatgtttggttcctggaagaagcaagagtcaggagtttctgttgcccaagaatcggcaaaaggtgtgggcgctaagtagaagcatgggtaactcccctcgtaccgactttcaacatccaaaggctactgttttggatatattagatggcttacattagcattttgagttgctaaagagagatctcaagcaaaaaaaaggttcatttttttgttttcttgattcttagctccctcctcctatggaactaaagcctctttgtttatagtctctccatcatatggtgattgggaaaaatgttatactgtagcatattattatcgccaaaatacatttagattctagtggaattgaatgttcatggatgacagggaatgatgtttatttgggaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="27255" stop="26130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26955" g_stop="26433" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="525" polyA_stop="550"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E280571" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26955" e_stop="26433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTATATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCATGGATGACAGGGAATGATGTTTATTTGG</genome_strand>
        <mrna_strand>GCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTTTATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCATGGATGACAGGGAATGATGTTTATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396334" ref_strand="+" ref_description="SGN-E396334 [TUS-47-C5](-)">
      <seq>gcaaaggacttaatctgcagactgagttgatgatgaacaccaactcaaaaacacctaagattcagatttctctcgaagataggactttactagagaaagtgatgaaacagaaatgtttggttcctggaagaagcaagagtcaggagtttttgttgcccaagaatcggcaaaaggtgtgggcgctaagtagaagcatgggtaactccccttgtaccgactttcaacatccaaagggtactgttttggatatattagatggcttacattagcattttgagttgctaaagagagatttcaagcaaaaaaaaggttcatttttttgtttttttgatttttagctccctcctcctatggaactaaagcctctttgtttatagtctttccatcatatggtgattgggaaaaatgttatactgtagcatattattatcgccaaaatacatttagattttagtggaattgaatgttcatggatgacagggaatgatgtttatttggaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="27230" stop="26133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26930" g_stop="26433" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="499" polyA_stop="524"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E396334" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26930" e_stop="26433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTATATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCATGGATGACAGGGAATGATGTTTATTTGG</genome_strand>
        <mrna_strand>GCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTTTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTTGTACCGACTTTCAACATCCAAAGGGTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATTTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTTTTGATTTTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTTTATAGTCTTTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTTTAGTGGAATTGAATGTTCATGGATGACAGGGAATGATGTTTATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280330" ref_strand="+" ref_description="SGN-E280330 [cLER-1-M23](-)">
      <seq>aaaggacttaatctgcagactcagttgatgatgaacaccaactcaaaagctcctaagactcagatttctctcgaagataggactttactagagaaagtgatgaaacagaaatgtttggttcctggaagaagcaagagtcagcagtttctgttgcccaagaatcggcaaaaggtgtgggcgctaagtataagcatgggtaactcccctcgtaccgactttcaacatccaaaggctactgttttggatatactatatggcttacattagcattttgagttgctaaagagagatctcaagccaaacaaaggttcatttttttgttttcttgattcttagctccctcctcctatggaactaaagcctctttgtttatagtctctccatcatatggtgattgggaaaaatgttatactgtagcatattattatcgccaaaatacatttagattctagtggaattgaatgttcatggatgacagggaatgatgtttatttgggaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="27228" stop="26130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26928" g_stop="26433" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="522"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E280330" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26928" e_stop="26433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTATATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCATGGATGACAGGGAATGATGTTTATTTGG</genome_strand>
        <mrna_strand>AAAGGACTTAATCTGCAGACTCAGTTGATGATGAACACCAACTCAAAAGCTCCTAAGACTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGCAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTATAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATACTATATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCCAAACAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTTTATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCATGGATGACAGGGAATGATGTTTATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280329" ref_strand="+" ref_description="SGN-E280329 [cLER-1-M23]">
      <seq>gcttttccaggacgatcaccaacacgcaaaggacttaatctgcagactgagttgatgatgaacaccaactcaaaaacacctaagattcagatttctctcgaagataggactttactagagaaagtgatgaaacagaaatgtttggttcctggaagaagcaagagtcaggagtttctgttgcccaagaatcggcaaaaggtgtgggcgctaagtagaagcatgggtaactcccctcgtaccgactttcaacatccaaaggctactgatctggatatattagatggcttacattagcattttgagttgctaaagagagatctcaagcaaaaaaaaggttcatttttttgttctcttgattcttagctccctcctcctatggaactaaagcctctttgtttataggctctccatcatatggcgattgggaaaaatgttatactgtagcatattattatcgcccaaatacatttagattctagtggaattgaatgttcatggatgacagggaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="27255" stop="26143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26955" g_stop="26443" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E280329" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26955" e_stop="26443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTATATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCATGGATGACAGGGAATGAT</genome_strand>
        <mrna_strand>GCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGATCTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTCTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTTTATAGGCTCTCCATCATATGGCGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCCAAATACATTTAGATTCTAGTGGAATTGAATGTTCATGGATGACAGGGAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396295" ref_strand="+" ref_description="SGN-E396295 [TUS-47-C5]">
      <seq>ggcttttccaggacgatcaccaacacgcaaaggacttaatctgcagactgagttgatgatgaacaccaactcaaaaacacctaagattcagatttctctcgaagataggactttactagagaaagtgatgaaacagaaatgtttggttcctggaagaagcaagagtcaggagtttctgttgcccaagaatcggcaaaaggtgtgggcgctaagtagaagcatgggtaactcccctcgtaccgactttcaacatccaaaggctactgttttggatatattagatggcttacattagcattttgagttgctaaagagagatctcaagcaaaaaaaaggttcatttttttgttttcttgattcttacctccctcctcctatggaactaaagcctctttgtttatagtctctccctcaaatggtgattgggaaaaatgttatactgtagcaaattattatcgccaaaatacttttagattccagtgaaattggaatggtcctggatgacgggaatggatggtttattttgggaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="27256" stop="26130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26956" g_stop="26445" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="529" polyA_stop="551"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E396295" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26956" e_stop="26445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTATATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATT-GAATGTTCATGGATGACAGGGAATG</genome_strand>
        <mrna_strand>GGCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTACCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTTTATAGTCTCTCCCTCAAATGGTGATTGGGAAAAATGTTATACTGTAGCAAATTATTATCGCCAAAATACTTTTAGATTCCAGTGAAATTGGAATGGTCCTGGATGAC-GGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280578" ref_strand="+" ref_description="SGN-E280578 [cLER-1-O24]">
      <seq>gcttttccaggacgatcaccaacacgcaaaggacttaatctgcagactgagttgatgatgaacaccaactcaaaaacacctaagattcagatttctctcgaagataggactttactagagaaagtgatgaaacagaaatgtttggttcctggaagaagcaagagtcaggagtttctgttgcccaagaatcggcaaaaggtgtgggcgctaagtagaagcatgggtaactcccctcgtaccgactttcaacatccaaaggctactgttttggatatattagatggcttacattagcattttgagttgctaaagagagatctcaagcaaaaaaaaggttcatttttttgttttcttgattcttagctccctcctcctatggaactaaagcctctttgtttatagtctctccatcatatggtgattgggaaaaatgttatactgtagcatattattatcgccaaaatacatttagattctagtggaattgaatgttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="27255" stop="26160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26955" g_stop="26460" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E280578" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26955" e_stop="26460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTATATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCAT</genome_strand>
        <mrna_strand>GCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTTTATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586490" ref_strand="+" ref_description="SGN-E586490 [60545]">
      <seq>tgaagataggaacttactcgagaaagtgatgaaacggaaatgtttggtccctggaagaagcaagagccaggagtttctgttacccaagaatcggaaaaaggtgtgggcgctaagtagaagcatgggtaactcccctcgtaccgactttcaacatccaaaggctactgttttggatatattagatggcttacattagcattttgagtttctaaagagagatctcaagcaaaaaaaagttcatttttttgttttcttgattcttagctccccccttctttggaaccaaaatctctttgtatatagtctctctatcatatggtgattgggaaaattgttatactgtatcatattattatcaccaaaatacatttagattcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="27156" stop="26178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26857" g_stop="26478" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="380" polyA_stop="394"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E586490" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26857" e_stop="26478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTATATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTA</genome_strand>
        <mrna_strand>TGAAGATAGGAACTTACTCGAGAAAGTGATGAAACGGAAATGTTTGGTCCCTGGAAGAAGCAAGAGCCAGGAGTTTCTGTTACCCAAGAATCGGAAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTTCTAAAGAGAGATCTCAAGCAAAAAAAA-GTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCCCCTTCTTTGGAACCAAAATCTCTTTGTATATAGTCTCTCTATCATATGGTGATTGGGAAAATTGTTATACTGTATCATATTATTATCACCAAAATACATTTAGATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740008" ref_strand="+" ref_description="SGN-E740008 [LC19CH01]">
      <seq>ccttgtggagaagcttgttgacattgttacgtatatacatcaagcaattgtggaagcatttggggacaacggattgacatctgctgtcaaggagcctgtgaagaaacaagaaagattgggagtagctggtctggctttacactatgctaacttagttactcaaattgataacattgcttcacggcccaccgctcttccccctaacatgagggatggattatataatggattgcctccttccataaaaacagcccttcgttcacgtctgcaggcggttgatgcaaaggaagagctcacaattccgcagattaaagcagaaatggaaaaaactcttcactggcttgtcccagtcgctgcagatactacgaaagcacaccaaggctttggatgggttggagagtgggccaacaccggaagcgagtttggcaagaagaaccctccacaagtttccctcattcgactgcagacactctaccatgctgacaaacagaaaatggactaccatgtccttgaactagtgacatggcttcaccgtttgatcagcctggtaagatataacgggcccaaggcttttccaggacgatcaccaacacgcaaaggacttaatctgcagactgaattgatgatgaacaccaactcaaaaacacctaagattcagatttctctcgaagataggactttactagagaaagtgatgaaacagaaatgtttggttcctggaagaagcaagagtcaggagtttctgttgcccaagaatcggcaaaaggtgtgggcgctaagtagaagcatgggtaactcccctcgtaccgactttcaacatccaaaggctactgttttggatatattagatggcttacattagcattttgagttgctaaagagagatctcaagcaaaaaaaaggttcatttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="29425" stop="26309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29127" g_stop="29057" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29056" i_stop="28254" i_length="803">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28253" g_stop="28150" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="175" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28149" i_stop="28057" i_length="93">
            <donor d_prob="0.399" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28056" g_stop="27940" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="292" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27939" i_stop="27804" i_length="136">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27803" g_stop="27727" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="369" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27726" i_stop="27612" i_length="115">
            <donor d_prob="0.106" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27611" g_stop="27567" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="414" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27566" i_stop="27110" i_length="457">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27109" g_stop="26609" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="915" r_length="501" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E740008" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>915</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29127" e_stop="29057"/>
          <exon e_start="28253" e_stop="28150"/>
          <exon e_start="28056" e_stop="27940"/>
          <exon e_start="27803" e_stop="27727"/>
          <exon e_start="27611" e_stop="27567"/>
          <exon e_start="27109" e_stop="26609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTGGAGAAGCTTGTTGACATTGTTACGTATATACATCAAGCAATTGTGGAAGCATTTGGGGACAACGGTATGAGAGTACATGTATTTTTTTGTTGATCAGTTTAAATTTGATGGCTGTCGTTATCAGCATTCTATTATTTGCAAATAACGAAGCTTAGAGTATCTAACCTTCATTGATGTTTGATAAATGGCTGTTTGCGCTCCACACCACTAAATTGCACCAGCCACTTCATTCTTTTGCCTCAGATACCTTTTACATGTTAACATTTTATCTTATTGAACTATTTTTCATTAATAATGGTTATAGAGGAAATCCTAAGCCAAATCCTGACTTTAAAAAAAAATGTAAAATGGTACGGGAAATTAAACAAAAGGGTAACTCCTGAGGAAAAAGGGAGGACAATCTTCAGTGTTTTTCCTTTTTCGGTCTTCAGTCCAAGTTTTCCAAGTCACTACAATTGCGTAACATTTTAGGAAAGATGACAGAGTTGTGACTAATCATTGATCTGTACATTTACCAAGCGAGGAATTCTTACTAAAGATTACGGCAAAGTCAAGCTATATATTCTCTCCGTTTCAATTTGTTTGCCCTGCTTTCTTTTTTAGTCCATTTCATAAAGTACGTCTCTTTCCTTTTTTGGCTACTCGTTAACTCCAACTGTCTATGTGACACGTTTAAGACCACAAGATTAAAAAATCTTCTTTATTTTCTTTAACTCCGGATCAATCAAAACCACACAAACAAATTGAAATGGGGGGAGTACTCTAGCTATTTACAATGCAGAGTTAACTTGCATATGTACACACATTGTCTCTTCTTTCCCAGAGTATGCTTTCTTAAATATAGACGAATCTCTATGCTTGTTGCAGGATTGACATCTGCTGTCAAGGAGCCTGTGAAGAAACAAGAAAGATTGGGAGTAGCTGGTCTGGCTTTACACTATGCTAACTTAGTTACTCAAATTGATAACATTGTAAGTTTTAGTGCTGAATTAGAGCGATACTGATTGCGCTGTTTACGACTGCTCCAATAGTATTCATAACAATGGGATTTGATATCATGTCAGGCTTCACGGCCCACCGCTCTTCCCCCTAACATGAGGGATGGATTATATAATGGATTGCCTCCTTCCATAAAAACGGCCCTTCGTTCACGTCTGCAGGCGGTTGATGCAAAGGAAGAGGTTTGTCCTCCATATTAATTTCTCATTCTTCCCCCCTTTCTCCCTTTTTCTCTTTTTGGGGTCTAATGATACCTCCCGTTTGCATTTAAGTTCTATATCTGTATAAAATAGTTTCTCCACGTTGTGCTTTTTGCAGCTCACAATTCCGCAGATTAAAGCAGAAATGGAAAAAACTCTTCACTGGCTTGTCCCAGTCGCTGCAGATACTACGAAGTATGTGTTTCGACAAAAGCTCTCCCCCCTAACCACCACCACACACACGCACAAACTTTTGCTAATATATGCTGATTCTTTTTTGTGTTTTTCTCTCTTGGCAATGGGATAACAGAGCACACCAAGGCTTTGGATGGGTTGGAGAGTGGGCCAACACCGGGTTAGTTCCATAAGTCTCTACATGAGCAAAATTGAATATTTACATTTGCAGTTTAGTTTGGATAGCATTCTTCAAGAATATAATATTTGGAGGCGGATGCAGCCATGCACTGTGGGTTCAATTGAACCTCGTTTATTCTATATAACATCATTTGTTTTGATATAATTTTTTGGTTGTGATAGTGAATGTTATTAATAGAGAATATATGATACAACATAACATGAACGATTGGTTCAAAGAAAATATGGTTGTTATATAGTTACATGCTTTATAGGATGCCAGATGGCTATTATAGAGAGGGCTGACTGTATATATAAGCATAATTTCAATAAATATTAGATTTTTGAACCCATAATTCAGTTGTACAATGATATCTGTTAAGGACTTCAAAAAATTGAAACATCAAAGTTTTAAATTTTCGATCAGCTTCTAATGTTATTGGTTTTTTCTCTTTCAGAAGCGAGTTTGGCAAGAAGAACCCTCCACAAGTTTCCCTCATTCGACTGCAGACACTCTACCATGCTGACAAACAGAAAATGGACTACCATGTCCTTGAACTAGTGACATGGCTTCACCGTTTGATCAGCCTGGTAAGATATAATGGGCCCAAGGCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTG</genome_strand>
        <mrna_strand>CCTTGTGGAGAAGCTTGTTGACATTGTTACGTATATACATCAAGCAATTGTGGAAGCATTTGGGGACAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGACATCTGCTGTCAAGGAGCCTGTGAAGAAACAAGAAAGATTGGGAGTAGCTGGTCTGGCTTTACACTATGCTAACTTAGTTACTCAAATTGATAACATT.............................................................................................GCTTCACGGCCCACCGCTCTTCCCCCTAACATGAGGGATGGATTATATAATGGATTGCCTCCTTCCATAAAAACAGCCCTTCGTTCACGTCTGCAGGCGGTTGATGCAAAGGAAGAG........................................................................................................................................CTCACAATTCCGCAGATTAAAGCAGAAATGGAAAAAACTCTTCACTGGCTTGTCCCAGTCGCTGCAGATACTACGAA...................................................................................................................AGCACACCAAGGCTTTGGATGGGTTGGAGAGTGGGCCAACACCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAGTTTGGCAAGAAGAACCCTCCACAAGTTTCCCTCATTCGACTGCAGACACTCTACCATGCTGACAAACAGAAAATGGACTACCATGTCCTTGAACTAGTGACATGGCTTCACCGTTTGATCAGCCTGGTAAGATATAACGGGCCCAAGGCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAATTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604042" ref_strand="+" ref_description="SGN-E604042 [67233]">
      <seq>gtgaactaaaacatcaaagaaagattgcgaggagcttgaaaaagaaatctctttgggctaagggtttggaggaggttgtggagaagcttgttgacattgttacttatatacatcaagcaattgtggaagcatttggggacaatggattgacatctgctgtcaagaagccagtgaagaaacaagaaagactgggagtagctggtctggctttacactatgctaacttagttactcaaattgataacattgcttcacggcccacctctcttccgcctaacatgagggatggattatataatggattacctccttccataaaaacggcccttcgttcacgtctgcaggcggttgatgcaaaggaagagctcacaattcctcagattaaagcagagatggaaaaaactcttcagtggcttgtcccagtagctgcagatactacgaaagcacaccaaggctttggatgggttggagagtgggccaagaccggaagcgagtttggcaagaagaaccctccacaagtttccctcattcgactgcagacactctaccatgcagacaaacagaaaatggactaccatgtcctcgaactagtgacatggcttcaccgtttgattagcctggtaagatttaacgggcccaaggctttcccaggacgatcaccaacacgcaaaggacttaatctgcagactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="29745" stop="26606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29445" g_stop="29372" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29371" i_stop="29127" i_length="245">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29126" g_stop="29057" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="144" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29056" i_stop="28254" i_length="803">
            <donor d_prob="0.890" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28253" g_stop="28150" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="248" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28149" i_stop="28057" i_length="93">
            <donor d_prob="0.399" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28056" g_stop="27940" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="365" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27939" i_stop="27804" i_length="136">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27803" g_stop="27727" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="442" r_length="77" r_score="0.948"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27726" i_stop="27612" i_length="115">
            <donor d_prob="0.106" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27611" g_stop="27567" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="487" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27566" i_stop="27110" i_length="457">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27109" g_stop="26906" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="691" r_length="204" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E604042" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29445" e_stop="29372"/>
          <exon e_start="29126" e_stop="29057"/>
          <exon e_start="28253" e_stop="28150"/>
          <exon e_start="28056" e_stop="27940"/>
          <exon e_start="27803" e_stop="27727"/>
          <exon e_start="27611" e_stop="27567"/>
          <exon e_start="27109" e_stop="26906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGCTAAAACATCAAAGAAAGATTGCGAGGAGCTTGAAAAAGAAATCTCTTTGGGCTAAGGGTTTGGAGGAGGTACTTTGACCAAAACTTTTCTTTATCTCATTTTCAAGTAAAGCATTTTTCACTTTTCTAATAATCAAATTAGTAGAACTCGTAAAAAGAGAACTTTTTCAAAATTACCGTGGAAATTGGTAAGCTCATGGAGGCAACAAGATCTTCATTTGATTTTGTGATTGAAATGAAAATTGTTTTTTTCTTTTAAGAGTGTCATTATTTTCAGCGATAATCACTTAGTGATCCCAAATTAATCATTGTAGGTTGTGGAGAAGCTTGTTGACATTGTTACGTATATACATCAAGCAATTGTGGAAGCATTTGGGGACAACGGTATGAGAGTACATGTATTTTTTTGTTGATCAGTTTAAATTTGATGGCTGTCGTTATCAGCATTCTATTATTTGCAAATAACGAAGCTTAGAGTATCTAACCTTCATTGATGTTTGATAAATGGCTGTTTGCGCTCCACACCACTAAATTGCACCAGCCACTTCATTCTTTTGCCTCAGATACCTTTTACATGTTAACATTTTATCTTATTGAACTATTTTTCATTAATAATGGTTATAGAGGAAATCCTAAGCCAAATCCTGACTTTAAAAAAAAATGTAAAATGGTACGGGAAATTAAACAAAAGGGTAACTCCTGAGGAAAAAGGGAGGACAATCTTCAGTGTTTTTCCTTTTTCGGTCTTCAGTCCAAGTTTTCCAAGTCACTACAATTGCGTAACATTTTAGGAAAGATGACAGAGTTGTGACTAATCATTGATCTGTACATTTACCAAGCGAGGAATTCTTACTAAAGATTACGGCAAAGTCAAGCTATATATTCTCTCCGTTTCAATTTGTTTGCCCTGCTTTCTTTTTTAGTCCATTTCATAAAGTACGTCTCTTTCCTTTTTTGGCTACTCGTTAACTCCAACTGTCTATGTGACACGTTTAAGACCACAAGATTAAAAAATCTTCTTTATTTTCTTTAACTCCGGATCAATCAAAACCACACAAACAAATTGAAATGGGGGGAGTACTCTAGCTATTTACAATGCAGAGTTAACTTGCATATGTACACACATTGTCTCTTCTTTCCCAGAGTATGCTTTCTTAAATATAGACGAATCTCTATGCTTGTTGCAGGATTGACATCTGCTGTCAAGGAGCCTGTGAAGAAACAAGAAAGATTGGGAGTAGCTGGTCTGGCTTTACACTATGCTAACTTAGTTACTCAAATTGATAACATTGTAAGTTTTAGTGCTGAATTAGAGCGATACTGATTGCGCTGTTTACGACTGCTCCAATAGTATTCATAACAATGGGATTTGATATCATGTCAGGCTTCACGGCCCACCGCTCTTCCCCCTAACATGAGGGATGGATTATATAATGGATTGCCTCCTTCCATAAAAACGGCCCTTCGTTCACGTCTGCAGGCGGTTGATGCAAAGGAAGAGGTTTGTCCTCCATATTAATTTCTCATTCTTCCCCCCTTTCTCCCTTTTTCTCTTTTTGGGGTCTAATGATACCTCCCGTTTGCATTTAAGTTCTATATCTGTATAAAATAGTTTCTCCACGTTGTGCTTTTTGCAGCTCACAATTCCGCAGATTAAAGCAGAAATGGAAAAAACTCTTCACTGGCTTGTCCCAGTCGCTGCAGATACTACGAAGTATGTGTTTCGACAAAAGCTCTCCCCCCTAACCACCACCACACACACGCACAAACTTTTGCTAATATATGCTGATTCTTTTTTGTGTTTTTCTCTCTTGGCAATGGGATAACAGAGCACACCAAGGCTTTGGATGGGTTGGAGAGTGGGCCAACACCGGGTTAGTTCCATAAGTCTCTACATGAGCAAAATTGAATATTTACATTTGCAGTTTAGTTTGGATAGCATTCTTCAAGAATATAATATTTGGAGGCGGATGCAGCCATGCACTGTGGGTTCAATTGAACCTCGTTTATTCTATATAACATCATTTGTTTTGATATAATTTTTTGGTTGTGATAGTGAATGTTATTAATAGAGAATATATGATACAACATAACATGAACGATTGGTTCAAAGAAAATATGGTTGTTATATAGTTACATGCTTTATAGGATGCCAGATGGCTATTATAGAGAGGGCTGACTGTATATATAAGCATAATTTCAATAAATATTAGATTTTTGAACCCATAATTCAGTTGTACAATGATATCTGTTAAGGACTTCAAAAAATTGAAACATCAAAGTTTTAAATTTTCGATCAGCTTCTAATGTTATTGGTTTTTTCTCTTTCAGAAGCGAGTTTGGCAAGAAGAACCCTCCACAAGTTTCCCTCATTCGACTGCAGACACTCTACCATGCTGACAAACAGAAAATGGACTACCATGTCCTTGAACTAGTGACATGGCTTCACCGTTTGATCAGCCTGGTAAGATATAATGGGCCCAAGGCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGA</genome_strand>
        <mrna_strand>GTGAACTAAAACATCAAAGAAAGATTGCGAGGAGCTTGAAAAAGAAATCTCTTTGGGCTAAGGGTTTGGAGGAG.....................................................................................................................................................................................................................................................GTTGTGGAGAAGCTTGTTGACATTGTTACTTATATACATCAAGCAATTGTGGAAGCATTTGGGGACAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGACATCTGCTGTCAAGAAGCCAGTGAAGAAACAAGAAAGACTGGGAGTAGCTGGTCTGGCTTTACACTATGCTAACTTAGTTACTCAAATTGATAACATT.............................................................................................GCTTCACGGCCCACCTCTCTTCCGCCTAACATGAGGGATGGATTATATAATGGATTACCTCCTTCCATAAAAACGGCCCTTCGTTCACGTCTGCAGGCGGTTGATGCAAAGGAAGAG........................................................................................................................................CTCACAATTCCTCAGATTAAAGCAGAGATGGAAAAAACTCTTCAGTGGCTTGTCCCAGTAGCTGCAGATACTACGAA...................................................................................................................AGCACACCAAGGCTTTGGATGGGTTGGAGAGTGGGCCAAGACCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAGTTTGGCAAGAAGAACCCTCCACAAGTTTCCCTCATTCGACTGCAGACACTCTACCATGCAGACAAACAGAAAATGGACTACCATGTCCTCGAACTAGTGACATGGCTTCACCGTTTGATTAGCCTGGTAAGATTTAACGGGCCCAAGGCTTTCCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485801" ref_strand="+" ref_description="SGN-E485801 [cSTE-19-H19]">
      <seq>caggattatcggaggaaacttgaggaattagattccttaaatctacctcgaaaaggtgaaggtctcatgatgttacagagtgaactaaaacatcaaagaaagattgcgaggagcttgaaaaagaaatctctttgggctaagggtttggaggaggttgtggagaagcttgttgacattgttacttatatacatcaagcaattgtggaagcatttggggacaatggattgacatctgctgtcaaggagccagtgaagaaacaagaaagactgggagtagctggtctggctttacactatgctaacttagttactcaaattgataacattgcttcacggcccacctctcttccgcctaacatgagggatggattatataatggattacctccttccataaaaacggcccttcgttcacgtctgcaggcggttgatgcaaaggaagagctcacaattcctcagattaaagcagagatggaaaaaactcttcagtggcttgtcccagtagctgcagatactacgaaagcacaccaaggctttggatgggttggagagtgggccaacaccggaagcgagtttggcaagaagaacctccacaagtttccctcattcgactgcagacactctaccatgcagacaaacagaaaatggattaccatgtcctcgaactagtgacatggcttcaccgtttgattagcctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="30013" stop="26676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29713" g_stop="29659" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29658" i_stop="29470" i_length="189">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29469" g_stop="29372" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="153" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29371" i_stop="29127" i_length="245">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29126" g_stop="29057" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="223" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29056" i_stop="28254" i_length="803">
            <donor d_prob="0.890" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28253" g_stop="28150" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="327" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28149" i_stop="28057" i_length="93">
            <donor d_prob="0.399" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28056" g_stop="27940" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="444" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27939" i_stop="27804" i_length="136">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27803" g_stop="27727" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="521" r_length="77" r_score="0.948"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27726" i_stop="27612" i_length="115">
            <donor d_prob="0.106" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27611" g_stop="27567" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="566" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27566" i_stop="27110" i_length="457">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27109" g_stop="26976" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="699" r_length="133" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E485801" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29713" e_stop="29659"/>
          <exon e_start="29469" e_stop="29372"/>
          <exon e_start="29126" e_stop="29057"/>
          <exon e_start="28253" e_stop="28150"/>
          <exon e_start="28056" e_stop="27940"/>
          <exon e_start="27803" e_stop="27727"/>
          <exon e_start="27611" e_stop="27567"/>
          <exon e_start="27109" e_stop="26976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATTATCGGAGGAAACTTGAGGAATTAGATTCCCTAAATCTACCTCGAAAAGGTATATCAGTGTTACTTTTTTTTTAGTTCTCTGTGATTTGTCATTTGTGCAAACTTAGCTGGATGACGGTTTGAGTAAAAATGTTGTGCAGATTCTTTTTGTGTATATTAAAAATGTCTTCTTTGGATTCTTCATTTTGATAATTTGGTAGATTAACATACAAATTGACACATTTTCTTTCACTTGTAGGGGAAGGTCTCATGATGTTACAGAGTGAGCTAAAACATCAAAGAAAGATTGCGAGGAGCTTGAAAAAGAAATCTCTTTGGGCTAAGGGTTTGGAGGAGGTACTTTGACCAAAACTTTTCTTTATCTCATTTTCAAGTAAAGCATTTTTCACTTTTCTAATAATCAAATTAGTAGAACTCGTAAAAAGAGAACTTTTTCAAAATTACCGTGGAAATTGGTAAGCTCATGGAGGCAACAAGATCTTCATTTGATTTTGTGATTGAAATGAAAATTGTTTTTTTCTTTTAAGAGTGTCATTATTTTCAGCGATAATCACTTAGTGATCCCAAATTAATCATTGTAGGTTGTGGAGAAGCTTGTTGACATTGTTACGTATATACATCAAGCAATTGTGGAAGCATTTGGGGACAACGGTATGAGAGTACATGTATTTTTTTGTTGATCAGTTTAAATTTGATGGCTGTCGTTATCAGCATTCTATTATTTGCAAATAACGAAGCTTAGAGTATCTAACCTTCATTGATGTTTGATAAATGGCTGTTTGCGCTCCACACCACTAAATTGCACCAGCCACTTCATTCTTTTGCCTCAGATACCTTTTACATGTTAACATTTTATCTTATTGAACTATTTTTCATTAATAATGGTTATAGAGGAAATCCTAAGCCAAATCCTGACTTTAAAAAAAAATGTAAAATGGTACGGGAAATTAAACAAAAGGGTAACTCCTGAGGAAAAAGGGAGGACAATCTTCAGTGTTTTTCCTTTTTCGGTCTTCAGTCCAAGTTTTCCAAGTCACTACAATTGCGTAACATTTTAGGAAAGATGACAGAGTTGTGACTAATCATTGATCTGTACATTTACCAAGCGAGGAATTCTTACTAAAGATTACGGCAAAGTCAAGCTATATATTCTCTCCGTTTCAATTTGTTTGCCCTGCTTTCTTTTTTAGTCCATTTCATAAAGTACGTCTCTTTCCTTTTTTGGCTACTCGTTAACTCCAACTGTCTATGTGACACGTTTAAGACCACAAGATTAAAAAATCTTCTTTATTTTCTTTAACTCCGGATCAATCAAAACCACACAAACAAATTGAAATGGGGGGAGTACTCTAGCTATTTACAATGCAGAGTTAACTTGCATATGTACACACATTGTCTCTTCTTTCCCAGAGTATGCTTTCTTAAATATAGACGAATCTCTATGCTTGTTGCAGGATTGACATCTGCTGTCAAGGAGCCTGTGAAGAAACAAGAAAGATTGGGAGTAGCTGGTCTGGCTTTACACTATGCTAACTTAGTTACTCAAATTGATAACATTGTAAGTTTTAGTGCTGAATTAGAGCGATACTGATTGCGCTGTTTACGACTGCTCCAATAGTATTCATAACAATGGGATTTGATATCATGTCAGGCTTCACGGCCCACCGCTCTTCCCCCTAACATGAGGGATGGATTATATAATGGATTGCCTCCTTCCATAAAAACGGCCCTTCGTTCACGTCTGCAGGCGGTTGATGCAAAGGAAGAGGTTTGTCCTCCATATTAATTTCTCATTCTTCCCCCCTTTCTCCCTTTTTCTCTTTTTGGGGTCTAATGATACCTCCCGTTTGCATTTAAGTTCTATATCTGTATAAAATAGTTTCTCCACGTTGTGCTTTTTGCAGCTCACAATTCCGCAGATTAAAGCAGAAATGGAAAAAACTCTTCACTGGCTTGTCCCAGTCGCTGCAGATACTACGAAGTATGTGTTTCGACAAAAGCTCTCCCCCCTAACCACCACCACACACACGCACAAACTTTTGCTAATATATGCTGATTCTTTTTTGTGTTTTTCTCTCTTGGCAATGGGATAACAGAGCACACCAAGGCTTTGGATGGGTTGGAGAGTGGGCCAACACCGGGTTAGTTCCATAAGTCTCTACATGAGCAAAATTGAATATTTACATTTGCAGTTTAGTTTGGATAGCATTCTTCAAGAATATAATATTTGGAGGCGGATGCAGCCATGCACTGTGGGTTCAATTGAACCTCGTTTATTCTATATAACATCATTTGTTTTGATATAATTTTTTGGTTGTGATAGTGAATGTTATTAATAGAGAATATATGATACAACATAACATGAACGATTGGTTCAAAGAAAATATGGTTGTTATATAGTTACATGCTTTATAGGATGCCAGATGGCTATTATAGAGAGGGCTGACTGTATATATAAGCATAATTTCAATAAATATTAGATTTTTGAACCCATAATTCAGTTGTACAATGATATCTGTTAAGGACTTCAAAAAATTGAAACATCAAAGTTTTAAATTTTCGATCAGCTTCTAATGTTATTGGTTTTTTCTCTTTCAGAAGCGAGTTTGGCAAGAAGAACCCTCCACAAGTTTCCCTCATTCGACTGCAGACACTCTACCATGCTGACAAACAGAAAATGGACTACCATGTCCTTGAACTAGTGACATGGCTTCACCGTTTGATCAGCCTGG</genome_strand>
        <mrna_strand>CAGGATTATCGGAGGAAACTTGAGGAATTAGATTCCTTAAATCTACCTCGAAAAG.............................................................................................................................................................................................GTGAAGGTCTCATGATGTTACAGAGTGAACTAAAACATCAAAGAAAGATTGCGAGGAGCTTGAAAAAGAAATCTCTTTGGGCTAAGGGTTTGGAGGAG.....................................................................................................................................................................................................................................................GTTGTGGAGAAGCTTGTTGACATTGTTACTTATATACATCAAGCAATTGTGGAAGCATTTGGGGACAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGACATCTGCTGTCAAGGAGCCAGTGAAGAAACAAGAAAGACTGGGAGTAGCTGGTCTGGCTTTACACTATGCTAACTTAGTTACTCAAATTGATAACATT.............................................................................................GCTTCACGGCCCACCTCTCTTCCGCCTAACATGAGGGATGGATTATATAATGGATTACCTCCTTCCATAAAAACGGCCCTTCGTTCACGTCTGCAGGCGGTTGATGCAAAGGAAGAG........................................................................................................................................CTCACAATTCCTCAGATTAAAGCAGAGATGGAAAAAACTCTTCAGTGGCTTGTCCCAGTAGCTGCAGATACTACGAA...................................................................................................................AGCACACCAAGGCTTTGGATGGGTTGGAGAGTGGGCCAACACCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAGTTTGGCAAGAAGAA-CCTCCACAAGTTTCCCTCATTCGACTGCAGACACTCTACCATGCAGACAAACAGAAAATGGATTACCATGTCCTCGAACTAGTGACATGGCTTCACCGTTTGATTAGCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470751" ref_strand="+" ref_description="SGN-E470751 [cSTB-20-K8]">
      <seq>ctctggctcagcatacgtgtgaattatatcacgaactgcacgcactggacagattcgaacaggattatcggaggaaacttgaggaattagattccttaaatctacctcgaaaaggtgaaggtctcatgatgttacagagtgaactaaaacatcaaagaaagattgcgaggagcttgaaaaagaaatctctttgggctaagggtttggaggaggttgtggagaagcttgttgacattgttacttatatacatcaagcaattgtggaagcatttggggacaatggattgacatctgctgtcaaggagccagtgaagaaacaagaaagactgggagtagctggtctggctttacactatgctaacttagttactcaaattgataacattgcttcacggcccacctctcttccgcctaacatgagggatggattatataatggattacctccttccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="30664" stop="27689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30364" g_stop="30345" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30344" i_stop="29753" i_length="592">
            <donor d_prob="0.965" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29752" g_stop="29659" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="114" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29658" i_stop="29470" i_length="189">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29469" g_stop="29372" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="212" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29371" i_stop="29127" i_length="245">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29126" g_stop="29057" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="282" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29056" i_stop="28254" i_length="803">
            <donor d_prob="0.890" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28253" g_stop="28150" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="386" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28149" i_stop="28057" i_length="93">
            <donor d_prob="0.399" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28056" g_stop="27989" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="454" r_length="68" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E470751" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30364" e_stop="30345"/>
          <exon e_start="29752" e_stop="29659"/>
          <exon e_start="29469" e_stop="29372"/>
          <exon e_start="29126" e_stop="29057"/>
          <exon e_start="28253" e_stop="28150"/>
          <exon e_start="28056" e_stop="27989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGGCTCAGCATACTTCTGTAAGTTCGTACCTTGTTTTGAAGTGCATGGTGGCTTTCTACTAATTTTTGTTTCTCAACATGTTACGTGTTTTACAGTATAAGTAAATCCTTCCTTCTGTTCTTGGAGTGAGAATTTCTTTTCATATCCTTTTTACTTTCATGAACTGTAACAATTTTGGGACAATATTGGAGTGGTTTCTTCTTGAGGGAATGGAGGGTCTTTCAGAAACAGCCTCTCTACCTCACAAGGTAGGGGTAAGGCCTGCATACACTCTACCTTCCCCGGATCCCACTAGCATGTTGTTGGTTTCTTCTCGGCTTTATAACTTCCTTGATGTTATACTAGACCTATTGTATGAGATTTGCCAATATTTACATTTACCAGCAAGAATATTTTCTGATTTATGTTGGTTGTACTGTCTTGTATAAGGAAAAAATATATTAAGAATGGTATGAGTTGAAGTGTAACCAAGACGGGAAGTTACTTGATTCTTTTCCTATGTCCGGTTTTATTTACTCTGAAGTTGATGTTCTCTCTAGAAGTTATGGCTCACATCTATATTGATATTCCAAAGTCATTGATGAGACACTGCCACTGGTATCTTTACAGGAATTATATCATGAAATGCATGCACTGGACAGATTCGAACAGGATTATCGGAGGAAACTTGAGGAATTAGATTCCCTAAATCTACCTCGAAAAGGTATATCAGTGTTACTTTTTTTTTAGTTCTCTGTGATTTGTCATTTGTGCAAACTTAGCTGGATGACGGTTTGAGTAAAAATGTTGTGCAGATTCTTTTTGTGTATATTAAAAATGTCTTCTTTGGATTCTTCATTTTGATAATTTGGTAGATTAACATACAAATTGACACATTTTCTTTCACTTGTAGGGGAAGGTCTCATGATGTTACAGAGTGAGCTAAAACATCAAAGAAAGATTGCGAGGAGCTTGAAAAAGAAATCTCTTTGGGCTAAGGGTTTGGAGGAGGTACTTTGACCAAAACTTTTCTTTATCTCATTTTCAAGTAAAGCATTTTTCACTTTTCTAATAATCAAATTAGTAGAACTCGTAAAAAGAGAACTTTTTCAAAATTACCGTGGAAATTGGTAAGCTCATGGAGGCAACAAGATCTTCATTTGATTTTGTGATTGAAATGAAAATTGTTTTTTTCTTTTAAGAGTGTCATTATTTTCAGCGATAATCACTTAGTGATCCCAAATTAATCATTGTAGGTTGTGGAGAAGCTTGTTGACATTGTTACGTATATACATCAAGCAATTGTGGAAGCATTTGGGGACAACGGTATGAGAGTACATGTATTTTTTTGTTGATCAGTTTAAATTTGATGGCTGTCGTTATCAGCATTCTATTATTTGCAAATAACGAAGCTTAGAGTATCTAACCTTCATTGATGTTTGATAAATGGCTGTTTGCGCTCCACACCACTAAATTGCACCAGCCACTTCATTCTTTTGCCTCAGATACCTTTTACATGTTAACATTTTATCTTATTGAACTATTTTTCATTAATAATGGTTATAGAGGAAATCCTAAGCCAAATCCTGACTTTAAAAAAAAATGTAAAATGGTACGGGAAATTAAACAAAAGGGTAACTCCTGAGGAAAAAGGGAGGACAATCTTCAGTGTTTTTCCTTTTTCGGTCTTCAGTCCAAGTTTTCCAAGTCACTACAATTGCGTAACATTTTAGGAAAGATGACAGAGTTGTGACTAATCATTGATCTGTACATTTACCAAGCGAGGAATTCTTACTAAAGATTACGGCAAAGTCAAGCTATATATTCTCTCCGTTTCAATTTGTTTGCCCTGCTTTCTTTTTTAGTCCATTTCATAAAGTACGTCTCTTTCCTTTTTTGGCTACTCGTTAACTCCAACTGTCTATGTGACACGTTTAAGACCACAAGATTAAAAAATCTTCTTTATTTTCTTTAACTCCGGATCAATCAAAACCACACAAACAAATTGAAATGGGGGGAGTACTCTAGCTATTTACAATGCAGAGTTAACTTGCATATGTACACACATTGTCTCTTCTTTCCCAGAGTATGCTTTCTTAAATATAGACGAATCTCTATGCTTGTTGCAGGATTGACATCTGCTGTCAAGGAGCCTGTGAAGAAACAAGAAAGATTGGGAGTAGCTGGTCTGGCTTTACACTATGCTAACTTAGTTACTCAAATTGATAACATTGTAAGTTTTAGTGCTGAATTAGAGCGATACTGATTGCGCTGTTTACGACTGCTCCAATAGTATTCATAACAATGGGATTTGATATCATGTCAGGCTTCACGGCCCACCGCTCTTCCCCCTAACATGAGGGATGGATTATATAATGGATTGCCTCCTTCCAT</genome_strand>
        <mrna_strand>CTCTGGCTCAGCATACGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTATATCACGAACTGCACGCACTGGACAGATTCGAACAGGATTATCGGAGGAAACTTGAGGAATTAGATTCCTTAAATCTACCTCGAAAAG.............................................................................................................................................................................................GTGAAGGTCTCATGATGTTACAGAGTGAACTAAAACATCAAAGAAAGATTGCGAGGAGCTTGAAAAAGAAATCTCTTTGGGCTAAGGGTTTGGAGGAG.....................................................................................................................................................................................................................................................GTTGTGGAGAAGCTTGTTGACATTGTTACTTATATACATCAAGCAATTGTGGAAGCATTTGGGGACAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGACATCTGCTGTCAAGGAGCCAGTGAAGAAACAAGAAAGACTGGGAGTAGCTGGTCTGGCTTTACACTATGCTAACTTAGTTACTCAAATTGATAACATT.............................................................................................GCTTCACGGCCCACCTCTCTTCCGCCTAACATGAGGGATGGATTATATAATGGATTACCTCCTTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419477" ref_strand="+" ref_description="SGN-E419477 [STM-29-N17]">
      <seq>gagtcaaacccaaaacccaaattccaaaccataaacacaacacaaacacaaagtacaaacccaaaaaaaagtaagcaaaaaagggcaaattttggtcaagtaattcagctgattgtccgtgtactctgaatcttctttttgcttctaaggtgtaaagattgagtctttttgtaccatttgagtgttgggagcaaaatgggaggtgtttgtacaggtggaacagcgaggagtagagttgaaattcaccatgagagcccctcagggtcttcaaaaaagatggagtcagttgagagcattggaaagcagaagaaagatgaatctttttcgtatcctgatgtgggtgcttttcgtgggacgcctaatctatatgattctggtgaattgtatatgtctatttcgagggagttgaagccatcgacacctgctaggacaggagtgaacaaggttcctagctcttttcttgggaaggccagtatagtcggcctagagaaagcagttgaagtattagatacacttgggagcagcatgacaaatttgaactccggaggctttatgactggaatgacatcaagagggaataaaatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="33452" stop="30892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33152" g_stop="33004" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33003" i_stop="32652" i_length="352">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32651" g_stop="32357" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="444" r_length="295" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32356" i_stop="31335" i_length="1022">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31334" g_stop="31192" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="587" r_length="143" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E419477" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33152" e_stop="33004"/>
          <exon e_start="32651" e_stop="32357"/>
          <exon e_start="31334" e_stop="31192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCAAACCCAAAACCCAAATTCCAAACCATAAACACAACACAAACACAAAGTACAAACCCAAAAAAAAGTAAGCAAAAAACGGCAATTTTTGGTCAAGTAATTCAGCTGATTGTCCGTGTACTCTGAATCTTCTTCTTGCTTCTAAGGTGGGTAGTTTTTACTCAATTTTTAAAATTTTTATTAGTCTTTTGTATGGTTTCTCATTTATGATCTTGAAATCCCAAAACCCCATTTCAGAATTTTACATTTTTGTTCATCTTTTTCTCTGAATTCAGTTTTCTTCTTCTGGTGTTTTAAGTTTGGTATGTTTGTTTATTTTGGCTGGATGAAAAAGGAATACCCTTTTTGAGTTTTTGTGTTTTAGTCTTGAAATAATTGAAAATGGGATGGATTTTAGGATCGGGTTGTTGTTCTTGGATTGTTTTAGCTTAAAGCTGAATGGATTGAATCTTTGATTGATGGATTTTGTTGTTTTTCTTGTTTTTTTCTTTTGATTAGGTGTAAAGATTGTATCTTTTTGTACCATTTGAGTGTTGGGAGCAAAATGGGAGGTGTTTGTACAGGTGGGACAGCTAGGAATAGAGTTGAAATTCACCATGAGAGCCCCCCGGGGTCTTCGAAAAAGGGGAATTCAGTTGAGAGCATTGGGAAGCAGAAGAAAGCTGAATCTTTTTCGTATCCTGATGTGGGTGCTTTTCGTGGGACGCCTAATCTATATGATTCTGGTGAATTGTATATGTCTATTTCAAGGGAGTTGAAGCCATCGACACCTGCTAGGACAGGAGTGAACAAGGTACTCATTTTTATGGAAACATTAATCTTTGTTGATGTATTTGGATGCTTGTTCTATAGCATATCAAAGCTGATCTGGTTGTTTTTATTCTGTGTGTCGTTAATGCTAAGCACTCTTGCACGCCTGATCATAAAATTGCCAACTTTCTCCCTTATTATACACGAAGGAGAGAATTTTCCTTTTAAGAATTGAAGAGAAAGAAAATAGGAAAGAAGAGTCAATTGACCGCATAATCAAACTTCTGCATTTTGTATTTCGAGGTGTATAGTTTTTGCAGAAGCTGATGGAGTGATTACTGAATGAAGGAATTGGTTGGATGAATTAGAATGTGCCTAGAAGTGAGAGGACCAATATGAAAAATGGAACGTAAGTTGTCTTTGATGTGCTTGTGCTAGAGCTGGACAATGCTGCAAGTCAGTTCTGTTGCCTTTGGCAAGTGAAAGCAGTTCAAAGTCCTCTAACCAATACAGTTCCACCAACATGTTGATGGATAAGAGCCTTTGGTAGATATTTGTACATAGATCATACACTCACGATTTCGAGTTCATATGGTAAAATTTGACATTTTTGCATTCTTGAATTCTGCCCGAAGTCCGGTGATGCTATAGGTATTCGCCGCTTCTCAACACATGGTCTTGCAGTCATAACGTTGTGATTGTATTGGAGAAATTAGCAATTTTGAAGCTTGTGTGCGTGTCTTGACATGATTTTTTATATTGAAACTTTTGGTTGCTCTCGAAAAGTTTGAGATGACTCCTTGGAATTGGAGATAAATCGCATAGAAGCCCATATTGATTGGTTTGTGCCGAAACGGCCCATATGACAACTTAAGTATGGCATGCTTTTGGAAGCTTGTATTGGATTACTTGTCTATTTCTCTTGTAACTTTGGCAGCTCGTTGCACGAGCCGTGTTTGAGCAACTTTCAGTTTTCTTTTTCTTGTTTTTTCACATTTTAAAGTAATCTGGAATCTTCATATGCACAACTGTAAGGTAACAAGACATGAATTCTTCTTGTGATAGGCTCCTAGCTCTTTTCTTGGGAAGGCCAGTATAGTCGGCCTAGAAAAAGCAGTTGAAGTATTAGATACACTTGGGAGCAGCATGACAAATTTGAACTCTGGAGGCTTTATGTCAGGAACGACATCAAGAGGGAATAAAATATC</genome_strand>
        <mrna_strand>GAGTCAAACCCAAAACCCAAATTCCAAACCATAAACACAACACAAACACAAAGTACAAACCCAAAAAAAAGTAAGCAAAAAAGGGCAAATTTTGGTCAAGTAATTCAGCTGATTGTCCGTGTACTCTGAATCTTCTTTTTGCTTCTAAG................................................................................................................................................................................................................................................................................................................................................................GTGTAAAGATTGAGTCTTTTTGTACCATTTGAGTGTTGGGAGCAAAATGGGAGGTGTTTGTACAGGTGGAACAGCGAGGAGTAGAGTTGAAATTCACCATGAGAGCCCCTCAGGGTCTTCAAAAAAGATGGAGTCAGTTGAGAGCATTGGAAAGCAGAAGAAAGATGAATCTTTTTCGTATCCTGATGTGGGTGCTTTTCGTGGGACGCCTAATCTATATGATTCTGGTGAATTGTATATGTCTATTTCGAGGGAGTTGAAGCCATCGACACCTGCTAGGACAGGAGTGAACAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTAGCTCTTTTCTTGGGAAGGCCAGTATAGTCGGCCTAGAGAAAGCAGTTGAAGTATTAGATACACTTGGGAGCAGCATGACAAATTTGAACTCCGGAGGCTTTATGACTGGAATGACATCAAGAGGGAATAAAATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444204" ref_strand="+" ref_description="SGN-E444204 [cSTA-42-E23]">
      <seq>gagtcaaacccaaaacccaaattccaaaccataaacacaacacaaacacaaagtacaaacccaaaaaaaagtaagcaaaaaagggcaaattttggtcaagtaattcagctgattgtccgtgtactctgaatcttcttcttgcttctaaggtgtaaagattgagtctttttgtaccatttgagtgttgggagcaaaatgggaggtgtttgtacaggtggaacagcgaggagtagagttgaaattcaccatgagagcccctcagggtcttcaaaaaagatggagtcagttgagagcattggaaagcagaagaaagatgaatctttttcgtatcctgatgtgggtgcttttcgtgggacgcctaatctatatgattctggtgaattgtatatgtctatttcgagggagttgaagccatcgacacctgctaggacaggagtgaacaaggttcctagctcttttcttgggaaggccagtatagtcggcctagagaaagcagttgaagtattagatacacttgggagcagcatgacaaatttgaactccggaggctttatgactggaatgacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="33452" stop="30910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33152" g_stop="33004" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33003" i_stop="32652" i_length="352">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32651" g_stop="32357" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="444" r_length="295" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32356" i_stop="31335" i_length="1022">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31334" g_stop="31210" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="569" r_length="125" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E444204" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33152" e_stop="33004"/>
          <exon e_start="32651" e_stop="32357"/>
          <exon e_start="31334" e_stop="31210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCAAACCCAAAACCCAAATTCCAAACCATAAACACAACACAAACACAAAGTACAAACCCAAAAAAAAGTAAGCAAAAAACGGCAATTTTTGGTCAAGTAATTCAGCTGATTGTCCGTGTACTCTGAATCTTCTTCTTGCTTCTAAGGTGGGTAGTTTTTACTCAATTTTTAAAATTTTTATTAGTCTTTTGTATGGTTTCTCATTTATGATCTTGAAATCCCAAAACCCCATTTCAGAATTTTACATTTTTGTTCATCTTTTTCTCTGAATTCAGTTTTCTTCTTCTGGTGTTTTAAGTTTGGTATGTTTGTTTATTTTGGCTGGATGAAAAAGGAATACCCTTTTTGAGTTTTTGTGTTTTAGTCTTGAAATAATTGAAAATGGGATGGATTTTAGGATCGGGTTGTTGTTCTTGGATTGTTTTAGCTTAAAGCTGAATGGATTGAATCTTTGATTGATGGATTTTGTTGTTTTTCTTGTTTTTTTCTTTTGATTAGGTGTAAAGATTGTATCTTTTTGTACCATTTGAGTGTTGGGAGCAAAATGGGAGGTGTTTGTACAGGTGGGACAGCTAGGAATAGAGTTGAAATTCACCATGAGAGCCCCCCGGGGTCTTCGAAAAAGGGGAATTCAGTTGAGAGCATTGGGAAGCAGAAGAAAGCTGAATCTTTTTCGTATCCTGATGTGGGTGCTTTTCGTGGGACGCCTAATCTATATGATTCTGGTGAATTGTATATGTCTATTTCAAGGGAGTTGAAGCCATCGACACCTGCTAGGACAGGAGTGAACAAGGTACTCATTTTTATGGAAACATTAATCTTTGTTGATGTATTTGGATGCTTGTTCTATAGCATATCAAAGCTGATCTGGTTGTTTTTATTCTGTGTGTCGTTAATGCTAAGCACTCTTGCACGCCTGATCATAAAATTGCCAACTTTCTCCCTTATTATACACGAAGGAGAGAATTTTCCTTTTAAGAATTGAAGAGAAAGAAAATAGGAAAGAAGAGTCAATTGACCGCATAATCAAACTTCTGCATTTTGTATTTCGAGGTGTATAGTTTTTGCAGAAGCTGATGGAGTGATTACTGAATGAAGGAATTGGTTGGATGAATTAGAATGTGCCTAGAAGTGAGAGGACCAATATGAAAAATGGAACGTAAGTTGTCTTTGATGTGCTTGTGCTAGAGCTGGACAATGCTGCAAGTCAGTTCTGTTGCCTTTGGCAAGTGAAAGCAGTTCAAAGTCCTCTAACCAATACAGTTCCACCAACATGTTGATGGATAAGAGCCTTTGGTAGATATTTGTACATAGATCATACACTCACGATTTCGAGTTCATATGGTAAAATTTGACATTTTTGCATTCTTGAATTCTGCCCGAAGTCCGGTGATGCTATAGGTATTCGCCGCTTCTCAACACATGGTCTTGCAGTCATAACGTTGTGATTGTATTGGAGAAATTAGCAATTTTGAAGCTTGTGTGCGTGTCTTGACATGATTTTTTATATTGAAACTTTTGGTTGCTCTCGAAAAGTTTGAGATGACTCCTTGGAATTGGAGATAAATCGCATAGAAGCCCATATTGATTGGTTTGTGCCGAAACGGCCCATATGACAACTTAAGTATGGCATGCTTTTGGAAGCTTGTATTGGATTACTTGTCTATTTCTCTTGTAACTTTGGCAGCTCGTTGCACGAGCCGTGTTTGAGCAACTTTCAGTTTTCTTTTTCTTGTTTTTTCACATTTTAAAGTAATCTGGAATCTTCATATGCACAACTGTAAGGTAACAAGACATGAATTCTTCTTGTGATAGGCTCCTAGCTCTTTTCTTGGGAAGGCCAGTATAGTCGGCCTAGAAAAAGCAGTTGAAGTATTAGATACACTTGGGAGCAGCATGACAAATTTGAACTCTGGAGGCTTTATGTCAGGAACGACATC</genome_strand>
        <mrna_strand>GAGTCAAACCCAAAACCCAAATTCCAAACCATAAACACAACACAAACACAAAGTACAAACCCAAAAAAAAGTAAGCAAAAAAGGGCAAATTTTGGTCAAGTAATTCAGCTGATTGTCCGTGTACTCTGAATCTTCTTCTTGCTTCTAAG................................................................................................................................................................................................................................................................................................................................................................GTGTAAAGATTGAGTCTTTTTGTACCATTTGAGTGTTGGGAGCAAAATGGGAGGTGTTTGTACAGGTGGAACAGCGAGGAGTAGAGTTGAAATTCACCATGAGAGCCCCTCAGGGTCTTCAAAAAAGATGGAGTCAGTTGAGAGCATTGGAAAGCAGAAGAAAGATGAATCTTTTTCGTATCCTGATGTGGGTGCTTTTCGTGGGACGCCTAATCTATATGATTCTGGTGAATTGTATATGTCTATTTCGAGGGAGTTGAAGCCATCGACACCTGCTAGGACAGGAGTGAACAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTAGCTCTTTTCTTGGGAAGGCCAGTATAGTCGGCCTAGAGAAAGCAGTTGAAGTATTAGATACACTTGGGAGCAGCATGACAAATTTGAACTCCGGAGGCTTTATGACTGGAATGACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419505" ref_strand="+" ref_description="SGN-E419505 [STM-29-B4]">
      <seq>gagtcaaacccaaaacccaaattccaaaccataaacacaacacaaacacaaagtacaaacccaaaaaaaagtaagcaaaaaagggcaaattttggtcaagtaattcagctgattgtccgtgtactctgaatcttcttcttgcttctaaggtgtaaagattgagtctttttgtaccatttgagtgttgggagcaaaatgggaggtgtttgtacaggtggaacagcgaggagtagagttgaaattcaccatgagagcccctcagggtcttcaaaaaagatggagtcagttgagagcattggaaagcagaagaaagatgaatctttttcgtatcctgatgtgggtgcttttcgtgggacgcctaatctatatgattctggtgaattgtatatgtctatttcgagggagttgaagccatcgacacctgctaggacaggagtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="33452" stop="32061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33152" g_stop="33004" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33003" i_stop="32652" i_length="352">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32651" g_stop="32361" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="440" r_length="291" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E419505" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33152" e_stop="33004"/>
          <exon e_start="32651" e_stop="32361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCAAACCCAAAACCCAAATTCCAAACCATAAACACAACACAAACACAAAGTACAAACCCAAAAAAAAGTAAGCAAAAAACGGCAATTTTTGGTCAAGTAATTCAGCTGATTGTCCGTGTACTCTGAATCTTCTTCTTGCTTCTAAGGTGGGTAGTTTTTACTCAATTTTTAAAATTTTTATTAGTCTTTTGTATGGTTTCTCATTTATGATCTTGAAATCCCAAAACCCCATTTCAGAATTTTACATTTTTGTTCATCTTTTTCTCTGAATTCAGTTTTCTTCTTCTGGTGTTTTAAGTTTGGTATGTTTGTTTATTTTGGCTGGATGAAAAAGGAATACCCTTTTTGAGTTTTTGTGTTTTAGTCTTGAAATAATTGAAAATGGGATGGATTTTAGGATCGGGTTGTTGTTCTTGGATTGTTTTAGCTTAAAGCTGAATGGATTGAATCTTTGATTGATGGATTTTGTTGTTTTTCTTGTTTTTTTCTTTTGATTAGGTGTAAAGATTGTATCTTTTTGTACCATTTGAGTGTTGGGAGCAAAATGGGAGGTGTTTGTACAGGTGGGACAGCTAGGAATAGAGTTGAAATTCACCATGAGAGCCCCCCGGGGTCTTCGAAAAAGGGGAATTCAGTTGAGAGCATTGGGAAGCAGAAGAAAGCTGAATCTTTTTCGTATCCTGATGTGGGTGCTTTTCGTGGGACGCCTAATCTATATGATTCTGGTGAATTGTATATGTCTATTTCAAGGGAGTTGAAGCCATCGACACCTGCTAGGACAGGAGTGAA</genome_strand>
        <mrna_strand>GAGTCAAACCCAAAACCCAAATTCCAAACCATAAACACAACACAAACACAAAGTACAAACCCAAAAAAAAGTAAGCAAAAAAGGGCAAATTTTGGTCAAGTAATTCAGCTGATTGTCCGTGTACTCTGAATCTTCTTCTTGCTTCTAAG................................................................................................................................................................................................................................................................................................................................................................GTGTAAAGATTGAGTCTTTTTGTACCATTTGAGTGTTGGGAGCAAAATGGGAGGTGTTTGTACAGGTGGAACAGCGAGGAGTAGAGTTGAAATTCACCATGAGAGCCCCTCAGGGTCTTCAAAAAAGATGGAGTCAGTTGAGAGCATTGGAAAGCAGAAGAAAGATGAATCTTTTTCGTATCCTGATGTGGGTGCTTTTCGTGGGACGCCTAATCTATATGATTCTGGTGAATTGTATATGTCTATTTCGAGGGAGTTGAAGCCATCGACACCTGCTAGGACAGGAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431226" ref_strand="+" ref_description="SGN-E431226 [STM-55-I19]">
      <seq>gcccaacgaattatcagacagggcccgtatccatcggtatcgttgccggatcaaaagaagcaccgattaaactccgacggcaactaaatcaatctgtgtgaaattccgccgattctccgccatggcgatcgacgtagtccctccactcatcgctgcacagctgaattacctagccactcacgctccattctctgttaaggtagagaatatgtgttcaggaggcaaaaacactggtttgctcgatcgattctccttagtaatccccttctgccttgattacatcaaatgggatgtgatatacaatgccgtgtatccgttagcagcaccagatgttatatttggggctgaagatgaaacgtttcgaccttatcattctgtaagtgatgctagtgactcaaagtcattgaagaatcctcttactgactggaataatagagatccgactagtcttttcactctggtcctgcagctgagggagttgtacaaggcgtaccaaaagaaaagagttgaacaagttgatgatgacaggttgaagtttgaaatcagcacaatgctttccagagaggggattgaaatgtctttgagttcaaatattgataagccagaagaggttaaatttgctgtcccactgctggatttggatttaaacaaaatggttgcgggatccacttggcgtcatccacagaagatatacctacaggttatatatccagttggcaggaaatactccagtgctcccttctgcccacgtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="42933" stop="46943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43233" g_stop="43431" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43432" i_stop="43524" i_length="93">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.549" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43525" g_stop="43612" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="287" r_length="88" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43613" i_stop="43734" i_length="122">
            <donor d_prob="0.923" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43735" g_stop="43921" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="474" r_length="187" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43922" i_stop="44018" i_length="97">
            <donor d_prob="0.803" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44019" g_stop="44109" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="565" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44110" i_stop="45621" i_length="1512">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45622" g_stop="45657" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="601" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45658" i_stop="45784" i_length="127">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45785" g_stop="45883" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="700" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45884" i_stop="46588" i_length="705">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46589" g_stop="46643" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="755" r_length="55" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E431226" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E431226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43233" e_stop="43431"/>
          <exon e_start="43525" e_stop="43612"/>
          <exon e_start="43735" e_stop="43921"/>
          <exon e_start="44019" e_stop="44109"/>
          <exon e_start="45622" e_stop="45657"/>
          <exon e_start="45785" e_stop="45883"/>
          <exon e_start="46589" e_stop="46643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCAACGAATTATCAGACGGAGCCCGTATCCATCCGTATCGTTGCCGGATTAAAAAAAGCACCGATTGAACTCCGACGGCTGTTAAAGCAATCTGTGTGAAATTCCGACGATTCTCCGCCATGGCGATCGACGCAGTCCCTCCACTCATCGCTGCACAGCTGAATTACATAGTCACTCACGCTCCATTCTCTGTTAAGGTCATTTTATATGCTTTTACTCAAAAAAATTAGGTCATTTCTGTAAACTTGCTTATGGTTATTCACTGACAAGGAACTTTGAAGCTTGTTCAGGTAGAAAATATGTGTTCAGGATGCAAAAACACTGGTTTGCTTGATCGGTTCTCGTTAGTAATCCCCTTCTGTCTTGATTTCATCAAATGTGAGTTACTTTTTAGCTTTCTAATTTACATTTCTGTTCAAGGTTGCATAGTGAATTAGTCTAGCTGTATATAGTTTGATCATGTTACCAACCTGTATTTTTGATGATGAAATTTGGGGTAGGGGATGTGATGTACAATGCTGTGTATCCATTAGCAGCACCAGATGTTATATTTGGGTCGGAAGATGAAACTTTTCGACCTTATCATGCTGTCAGTGATGCTAGTGACTCAAAGTCATTGAAGAACCCTCTTACTGACTGGAATAATAGAGATCCGACTAGTCTTTTCACTCTGGTTCTGCAGCTGAGGTTGGGCATTTTCACTTTTCACATCATTAGTTTGTGTAAAGTGAGGAACATTTTCTGAAAAAAGAAGAGCTGAGATTTAGTTTTTTATGGTTGTTAGGGAGTTGTACAAGGCGTACCAAAAGAAAAGAGTTGAACAAGTTGATGATGACAGGTTGAAGTTTGAAATCAGCACAATGCTTTCCAGAGAGGTAATTCAGTTTGATCATCAAGTTGTTGTTTGGGTTAGATTATTCGTGTGCACTGGACACCTTTCGGTAGTAAGGTGATCATTGTAATTTCATTGAATTGTAAAATGGGGACAGTGTTGTGTAATCTAGCTCCAACATTTTCCGAACTTGTTAGCTTGTCATTAATTTAGTCTTTGTCTGCTGCTAATTCGCCTCCAATGTAAGTATATGATATGGAATCAGGAGTTCCTCCCAATGGAGCTAGGTGTGCTATTGCATTGGTATTATTGGCATGATCATGACAACCAACAAATTATACTTGATTCGTTATAACTAAGAAGTAAAAGGATACTTGTATTGAAAATCAAATCTTAGAGAGAATCCCAAAAAAATTGGAGTGTGTAAAGCATCTACTACAGGCATCTAGAGAAGAATCTCGGAAGGAGATTAAACGAAAAGGAGTGACGTAGAAATTTCTATATAAAAGACATTCCATTTTTCTTCAATTCCATCTTAGCTTTTGTATTGATTATAGAAATCTATAAAACTTTCCAAGACTTTCGCCAATGATTTTGGTCAAAGTACTTGACCAAATCGGACACGGATCCCACACCCGCACCGATGTCGTGTCGACACGGGTGCGGCACCCCGTGTTGGCACCAAAAGTGAAGAGTCCAAGCAACTTAGGTTATGAGCATATGTGGTCTAAGTTGCTTAGACTTTTCACTTTGGTGCCGCACCCGTATCATAACGACGTAGGTGTGGGATCTGTACCTGATTTAGTCAACTAATTATGGGTACTTTGACCAAATTCGATGCAGGAATTCGAGACATATTTGATGATTTCTGTAATCAAAACTAAGGTGAAAATGAAATACCTTGTATATATAAATATCTATTGCCACTCCCTTTCCTTTTATCTCCTTTCGGGATTCTCGTCATGTTTTCCACATAATATCTCATAATTTAGGTTTTAGAACTTTATTTTTACATATTGGAATTATTTTAAGCCGAATCCCCGCACTCGTATACATACATGGATCCGTATTCCCGAATCTTAAAATTTAGATCATAGAGGATGTGATCTCTAGATCCATACCCATAATCGGACACCTGAACCTGAGTCTGAGCAACTTAGTCTATGGTTGCTTTCTAAGGTGTATGTCAAAATTTGCTGTTTCTGACAATCGGCAGGTGGTTAACACTAGACCAAATTGATCTAGGTAGCATACATCATCCTGTGTGGTGAATTTTTAATATGTCGCTACATTTCAATTCTTACAGTGGATGGCCTATTGCTTATAGGTTTAGCTATTAAGATTATGTGTGATGGATTCATAGGGCTCATTTGAGTGCAAGTGTTAACTCTAATTTTGATGGTTTTCTTGCCTAATTTATTAGATTGGAAGACTCTATAGAGGGGAAGGGGTTTTAAAAGTGTGATCGCGGCTCTCTCCTCCTCAAGTTATAATTTGTTCTTTCTATAACGAGCTTTAATTATACTTCGTTCTGTTTTTGATCATTATGTTGCAGGGGATTGAAATGTCTTTGAGTTCAAATATTGATAAGGTACTCCACTGTCACTAACACCTGCATTTAGTAATCCCCTTTCTGCTCTTATGTGGAAGGATTATCCTGCGTAACGTTCGAATCTTGACTGTATGGATGGTTTATGTGCCATTAAATTGTAGTGTAGCCAGAAGAGGTTAAATTTGCTGTCCCACTGCTGGATTTGGATTTAAACAAAATGGTTGCAGGATCCACTTGGCGCCATCCACAGAAGATATACCTACAGGTCGGCTTTCTGAAGGATCTTTCCGTACATTGTGTATGCTTGTCTGTATATATTACCAGAAGATGAAAACACTGATTAAATTTTAATATCTCCAACACAAATGAAATAGTTATATGGTTTGATTGTCAACTGAAACTAAGCCCTAGTCTCTGAAATCTATTTTAGTTTGCTTTCCTTAGTTTTAAATGTAATAGCTATAATAATTAGAAGAATGAAGATCACATTTTAAATAAAATGTTTTTTCTTAAAGAATCATAGTAGTAGAAGATACTGATTGAAGGAGATTTAAGCATCGCATCATTTGAGGCATTATTTTTGCGTAACTCTGGGGGAAAATTAGGATGAATGAATGCAATACATCTTTTTTGTCATTTACTATTGAAGGAGATTTAAGCATGGCATCATTTGAGGATCATTTGAAGCATTATTTTTGCATATCTTCTGGGGAAAATTTGGATGAATGAATGCAATACATTTTTTTTGTCATTTACTTGCTTTCATATCATTCCTAAAGCTGCATCATTTAAGTGTTAAAACTGAAACTTTTTGTGGAGGTTAAATAGTTCATTTGTTGGTTTAATTGTTTCTTCAGCTTGTATTTATCATTGAGACTAAATGAGTAATTTGTTTGTCTAATCATCTTTTGGCTTGTCATTTTTTCTTCCTTTCTCGGTTCTCTTTTGATTAACTTTACTAATGTGACAGGTTATATATCCAGTTGGCAGGAAATACTCCAGTGCT-CCTTCTGCCCCACGTTTGA</genome_strand>
        <mrna_strand>GCCCAACGAATTATCAGACAGGGCCCGTATCCATCGGTATCGTTGCCGGATCAAAAGAAGCACCGATTAAACTCCGACGGCAACTAAATCAATCTGTGTGAAATTCCGCCGATTCTCCGCCATGGCGATCGACGTAGTCCCTCCACTCATCGCTGCACAGCTGAATTACCTAGCCACTCACGCTCCATTCTCTGTTAAG.............................................................................................GTAGAGAATATGTGTTCAGGAGGCAAAAACACTGGTTTGCTCGATCGATTCTCCTTAGTAATCCCCTTCTGCCTTGATTACATCAAAT..........................................................................................................................GGGATGTGATATACAATGCCGTGTATCCGTTAGCAGCACCAGATGTTATATTTGGGGCTGAAGATGAAACGTTTCGACCTTATCATTCTGTAAGTGATGCTAGTGACTCAAAGTCATTGAAGAATCCTCTTACTGACTGGAATAATAGAGATCCGACTAGTCTTTTCACTCTGGTCCTGCAGCTGAG.................................................................................................GGAGTTGTACAAGGCGTACCAAAAGAAAAGAGTTGAACAAGTTGATGATGACAGGTTGAAGTTTGAAATCAGCACAATGCTTTCCAGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTGAAATGTCTTTGAGTTCAAATATTGATAAG...............................................................................................................................CCAGAAGAGGTTAAATTTGCTGTCCCACTGCTGGATTTGGATTTAAACAAAATGGTTGCGGGATCCACTTGGCGTCATCCACAGAAGATATACCTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATATCCAGTTGGCAGGAAATACTCCAGTGCTCCCTTCTG-CCCACGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463674" ref_strand="+" ref_description="SGN-E463674 [cPRO-15-M8]">
      <seq>gcccaacgaattatcagacagggcccgtatccatcggtatcgttgccggatcaaaagaagcaccgattaaactccgacggcaactaaatcaatctgtgtgaaattccgccgattctccgccatggcgatcgacgtagtccctccactcatcgctgcacagctgaattacctagccactcacgctccattctctgttaaggtagagaatatgtgttcaggaggcaaaaacactggtttgctcgatcgattctccttagtaatccccttctgccttgattacatcaaatgggatgtgatatacaatgccgtgtatccgttagcagcaccagatgttatatttggggctgaagatgaaacgtttcgaccttatcattctgtaagtgatgctagtgactcaaagtcattgaagaatcctcttactgactggaataatagagatccgactagtcttttcactctggtcctgcagctgagggagttgtacnaggcgtaccaaaagaaaagagttgaacaagttgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="42933" stop="44368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43233" g_stop="43431" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43432" i_stop="43524" i_length="93">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.549" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43525" g_stop="43612" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="287" r_length="88" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43613" i_stop="43734" i_length="122">
            <donor d_prob="0.923" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43735" g_stop="43921" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="474" r_length="187" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43922" i_stop="44018" i_length="97">
            <donor d_prob="0.803" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44019" g_stop="44068" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="524" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E463674" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43233" e_stop="43431"/>
          <exon e_start="43525" e_stop="43612"/>
          <exon e_start="43735" e_stop="43921"/>
          <exon e_start="44019" e_stop="44068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCAACGAATTATCAGACGGAGCCCGTATCCATCCGTATCGTTGCCGGATTAAAAAAAGCACCGATTGAACTCCGACGGCTGTTAAAGCAATCTGTGTGAAATTCCGACGATTCTCCGCCATGGCGATCGACGCAGTCCCTCCACTCATCGCTGCACAGCTGAATTACATAGTCACTCACGCTCCATTCTCTGTTAAGGTCATTTTATATGCTTTTACTCAAAAAAATTAGGTCATTTCTGTAAACTTGCTTATGGTTATTCACTGACAAGGAACTTTGAAGCTTGTTCAGGTAGAAAATATGTGTTCAGGATGCAAAAACACTGGTTTGCTTGATCGGTTCTCGTTAGTAATCCCCTTCTGTCTTGATTTCATCAAATGTGAGTTACTTTTTAGCTTTCTAATTTACATTTCTGTTCAAGGTTGCATAGTGAATTAGTCTAGCTGTATATAGTTTGATCATGTTACCAACCTGTATTTTTGATGATGAAATTTGGGGTAGGGGATGTGATGTACAATGCTGTGTATCCATTAGCAGCACCAGATGTTATATTTGGGTCGGAAGATGAAACTTTTCGACCTTATCATGCTGTCAGTGATGCTAGTGACTCAAAGTCATTGAAGAACCCTCTTACTGACTGGAATAATAGAGATCCGACTAGTCTTTTCACTCTGGTTCTGCAGCTGAGGTTGGGCATTTTCACTTTTCACATCATTAGTTTGTGTAAAGTGAGGAACATTTTCTGAAAAAAGAAGAGCTGAGATTTAGTTTTTTATGGTTGTTAGGGAGTTGTACAAGGCGTACCAAAAGAAAAGAGTTGAACAAGTTGATGATG</genome_strand>
        <mrna_strand>GCCCAACGAATTATCAGACAGGGCCCGTATCCATCGGTATCGTTGCCGGATCAAAAGAAGCACCGATTAAACTCCGACGGCAACTAAATCAATCTGTGTGAAATTCCGCCGATTCTCCGCCATGGCGATCGACGTAGTCCCTCCACTCATCGCTGCACAGCTGAATTACCTAGCCACTCACGCTCCATTCTCTGTTAAG.............................................................................................GTAGAGAATATGTGTTCAGGAGGCAAAAACACTGGTTTGCTCGATCGATTCTCCTTAGTAATCCCCTTCTGCCTTGATTACATCAAAT..........................................................................................................................GGGATGTGATATACAATGCCGTGTATCCGTTAGCAGCACCAGATGTTATATTTGGGGCTGAAGATGAAACGTTTCGACCTTATCATTCTGTAAGTGATGCTAGTGACTCAAAGTCATTGAAGAATCCTCTTACTGACTGGAATAATAGAGATCCGACTAGTCTTTTCACTCTGGTCCTGCAGCTGAG.................................................................................................GGAGTTGTACNAGGCGTACCAAAAGAAAAGAGTTGAACAAGTTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707459" ref_strand="+" ref_description="SGN-E707459 [FA33AC09]">
      <seq>cgatttatcagacggagcccgtatccatccgtatcgttgccggattaaaaaaagcaccgattgaactccgacggctgttaaagcaatctgtgtgaaattccgacgattctccgccatggcgatcgacgcagtccctccactcatcgctgcacagctgaattacatagtcactcacgctccattctctgttaaggtagaaaatatgtgttcaggatgcaaaaacactggtttgcttgatcggttctcgttagtaatccccttctgtcttgatttcatcaaatgggatgtgatgtacaatgctgtgtatccattagcagcaccagatgttatatttgggtcggaagatgaaacttttcgaccttatcatgctgtcagtgatgctagtgactcaaagtcattgaagaaccctcttactgactggaataatagagatccgactagtcttttcactctggttctgcagctgagggagttgtacaaggcgtaccaaaagaaaagagttgaacaagttgatgatgacaggttgaagtttgaaatcagcacaatgctttccagagaggggattgaaatgtctttgagttcaaatattgataagccagaagaggttaaatttgctgtcccactgctggatttggatttaaacaaaatggttgcaggatccacttggcgccatccacagaagatatacctacaggttatatatccagttggcaggaaatactccagtgctccttctgccccacgtttgaaattggtatcttctcctgaattgaaggctgtcttctcaattgatgatttcaggcttcctccatggttggatggaatgtgtatggctgagtaccttccgacattagaagagatgcttgaatcacagattaaagatgcagttgcatccattgaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="42939" stop="47334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43239" g_stop="43431" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43432" i_stop="43524" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.549" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43525" g_stop="43612" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="281" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43613" i_stop="43734" i_length="122">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43735" g_stop="43921" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="468" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43922" i_stop="44018" i_length="97">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44019" g_stop="44109" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="559" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44110" i_stop="45621" i_length="1512">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45622" g_stop="45657" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="595" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45658" i_stop="45784" i_length="127">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45785" g_stop="45883" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="694" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45884" i_stop="46588" i_length="705">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46589" g_stop="46719" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="825" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46720" i_stop="46869" i_length="150">
            <donor d_prob="0.307" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46870" g_stop="46918" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="874" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="46919" i_stop="47004" i_length="86">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="47005" g_stop="47034" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="875" r_stop="904" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E707459" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43239" e_stop="43431"/>
          <exon e_start="43525" e_stop="43612"/>
          <exon e_start="43735" e_stop="43921"/>
          <exon e_start="44019" e_stop="44109"/>
          <exon e_start="45622" e_stop="45657"/>
          <exon e_start="45785" e_stop="45883"/>
          <exon e_start="46589" e_stop="46719"/>
          <exon e_start="46870" e_stop="46918"/>
          <exon e_start="47005" e_stop="47034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATTATCAGACGGAGCCCGTATCCATCCGTATCGTTGCCGGATTAAAAAAAGCACCGATTGAACTCCGACGGCTGTTAAAGCAATCTGTGTGAAATTCCGACGATTCTCCGCCATGGCGATCGACGCAGTCCCTCCACTCATCGCTGCACAGCTGAATTACATAGTCACTCACGCTCCATTCTCTGTTAAGGTCATTTTATATGCTTTTACTCAAAAAAATTAGGTCATTTCTGTAAACTTGCTTATGGTTATTCACTGACAAGGAACTTTGAAGCTTGTTCAGGTAGAAAATATGTGTTCAGGATGCAAAAACACTGGTTTGCTTGATCGGTTCTCGTTAGTAATCCCCTTCTGTCTTGATTTCATCAAATGTGAGTTACTTTTTAGCTTTCTAATTTACATTTCTGTTCAAGGTTGCATAGTGAATTAGTCTAGCTGTATATAGTTTGATCATGTTACCAACCTGTATTTTTGATGATGAAATTTGGGGTAGGGGATGTGATGTACAATGCTGTGTATCCATTAGCAGCACCAGATGTTATATTTGGGTCGGAAGATGAAACTTTTCGACCTTATCATGCTGTCAGTGATGCTAGTGACTCAAAGTCATTGAAGAACCCTCTTACTGACTGGAATAATAGAGATCCGACTAGTCTTTTCACTCTGGTTCTGCAGCTGAGGTTGGGCATTTTCACTTTTCACATCATTAGTTTGTGTAAAGTGAGGAACATTTTCTGAAAAAAGAAGAGCTGAGATTTAGTTTTTTATGGTTGTTAGGGAGTTGTACAAGGCGTACCAAAAGAAAAGAGTTGAACAAGTTGATGATGACAGGTTGAAGTTTGAAATCAGCACAATGCTTTCCAGAGAGGTAATTCAGTTTGATCATCAAGTTGTTGTTTGGGTTAGATTATTCGTGTGCACTGGACACCTTTCGGTAGTAAGGTGATCATTGTAATTTCATTGAATTGTAAAATGGGGACAGTGTTGTGTAATCTAGCTCCAACATTTTCCGAACTTGTTAGCTTGTCATTAATTTAGTCTTTGTCTGCTGCTAATTCGCCTCCAATGTAAGTATATGATATGGAATCAGGAGTTCCTCCCAATGGAGCTAGGTGTGCTATTGCATTGGTATTATTGGCATGATCATGACAACCAACAAATTATACTTGATTCGTTATAACTAAGAAGTAAAAGGATACTTGTATTGAAAATCAAATCTTAGAGAGAATCCCAAAAAAATTGGAGTGTGTAAAGCATCTACTACAGGCATCTAGAGAAGAATCTCGGAAGGAGATTAAACGAAAAGGAGTGACGTAGAAATTTCTATATAAAAGACATTCCATTTTTCTTCAATTCCATCTTAGCTTTTGTATTGATTATAGAAATCTATAAAACTTTCCAAGACTTTCGCCAATGATTTTGGTCAAAGTACTTGACCAAATCGGACACGGATCCCACACCCGCACCGATGTCGTGTCGACACGGGTGCGGCACCCCGTGTTGGCACCAAAAGTGAAGAGTCCAAGCAACTTAGGTTATGAGCATATGTGGTCTAAGTTGCTTAGACTTTTCACTTTGGTGCCGCACCCGTATCATAACGACGTAGGTGTGGGATCTGTACCTGATTTAGTCAACTAATTATGGGTACTTTGACCAAATTCGATGCAGGAATTCGAGACATATTTGATGATTTCTGTAATCAAAACTAAGGTGAAAATGAAATACCTTGTATATATAAATATCTATTGCCACTCCCTTTCCTTTTATCTCCTTTCGGGATTCTCGTCATGTTTTCCACATAATATCTCATAATTTAGGTTTTAGAACTTTATTTTTACATATTGGAATTATTTTAAGCCGAATCCCCGCACTCGTATACATACATGGATCCGTATTCCCGAATCTTAAAATTTAGATCATAGAGGATGTGATCTCTAGATCCATACCCATAATCGGACACCTGAACCTGAGTCTGAGCAACTTAGTCTATGGTTGCTTTCTAAGGTGTATGTCAAAATTTGCTGTTTCTGACAATCGGCAGGTGGTTAACACTAGACCAAATTGATCTAGGTAGCATACATCATCCTGTGTGGTGAATTTTTAATATGTCGCTACATTTCAATTCTTACAGTGGATGGCCTATTGCTTATAGGTTTAGCTATTAAGATTATGTGTGATGGATTCATAGGGCTCATTTGAGTGCAAGTGTTAACTCTAATTTTGATGGTTTTCTTGCCTAATTTATTAGATTGGAAGACTCTATAGAGGGGAAGGGGTTTTAAAAGTGTGATCGCGGCTCTCTCCTCCTCAAGTTATAATTTGTTCTTTCTATAACGAGCTTTAATTATACTTCGTTCTGTTTTTGATCATTATGTTGCAGGGGATTGAAATGTCTTTGAGTTCAAATATTGATAAGGTACTCCACTGTCACTAACACCTGCATTTAGTAATCCCCTTTCTGCTCTTATGTGGAAGGATTATCCTGCGTAACGTTCGAATCTTGACTGTATGGATGGTTTATGTGCCATTAAATTGTAGTGTAGCCAGAAGAGGTTAAATTTGCTGTCCCACTGCTGGATTTGGATTTAAACAAAATGGTTGCAGGATCCACTTGGCGCCATCCACAGAAGATATACCTACAGGTCGGCTTTCTGAAGGATCTTTCCGTACATTGTGTATGCTTGTCTGTATATATTACCAGAAGATGAAAACACTGATTAAATTTTAATATCTCCAACACAAATGAAATAGTTATATGGTTTGATTGTCAACTGAAACTAAGCCCTAGTCTCTGAAATCTATTTTAGTTTGCTTTCCTTAGTTTTAAATGTAATAGCTATAATAATTAGAAGAATGAAGATCACATTTTAAATAAAATGTTTTTTCTTAAAGAATCATAGTAGTAGAAGATACTGATTGAAGGAGATTTAAGCATCGCATCATTTGAGGCATTATTTTTGCGTAACTCTGGGGGAAAATTAGGATGAATGAATGCAATACATCTTTTTTGTCATTTACTATTGAAGGAGATTTAAGCATGGCATCATTTGAGGATCATTTGAAGCATTATTTTTGCATATCTTCTGGGGAAAATTTGGATGAATGAATGCAATACATTTTTTTTGTCATTTACTTGCTTTCATATCATTCCTAAAGCTGCATCATTTAAGTGTTAAAACTGAAACTTTTTGTGGAGGTTAAATAGTTCATTTGTTGGTTTAATTGTTTCTTCAGCTTGTATTTATCATTGAGACTAAATGAGTAATTTGTTTGTCTAATCATCTTTTGGCTTGTCATTTTTTCTTCCTTTCTCGGTTCTCTTTTGATTAACTTTACTAATGTGACAGGTTATATATCCAGTTGGCAGGAAATACTCCAGTGCTCCTTCTGCCCCACGTTTGAAATTGGTATCTTCTCCTGAATTGAAGGCTGTCTTCTCAATTGATGATTTCAGGCTTCCTCCATGGTTGGATGGAATGTAAGTTCTGATTATTGCTGCAGAAGCAAGCAGCCTTGTCAACCCTTCTCCTATTTGAGGAGCATTTTTGTTATGCTATCCTTTCCAACAAAGTTGCGGTATCATCTTATGTTCATAATTCTTTTCTCTTTCTTCTTTTTAAATTTTTAGGTGTATGGCTGAGTACCTTCCGACATTAGAAGAGATGCTTGAATCACAGGTTAATTACTAATTTCTCCATTGGGGTTTATGCCAAATTATTTTGTTAAAGTTCTCTTTCCTGTTTTGTCCATCTGCTCTTGACAGATTAAAGATGCAGTTGCATCCATTGAAAGT</genome_strand>
        <mrna_strand>CGATTTATCAGACGGAGCCCGTATCCATCCGTATCGTTGCCGGATTAAAAAAAGCACCGATTGAACTCCGACGGCTGTTAAAGCAATCTGTGTGAAATTCCGACGATTCTCCGCCATGGCGATCGACGCAGTCCCTCCACTCATCGCTGCACAGCTGAATTACATAGTCACTCACGCTCCATTCTCTGTTAAG.............................................................................................GTAGAAAATATGTGTTCAGGATGCAAAAACACTGGTTTGCTTGATCGGTTCTCGTTAGTAATCCCCTTCTGTCTTGATTTCATCAAAT..........................................................................................................................GGGATGTGATGTACAATGCTGTGTATCCATTAGCAGCACCAGATGTTATATTTGGGTCGGAAGATGAAACTTTTCGACCTTATCATGCTGTCAGTGATGCTAGTGACTCAAAGTCATTGAAGAACCCTCTTACTGACTGGAATAATAGAGATCCGACTAGTCTTTTCACTCTGGTTCTGCAGCTGAG.................................................................................................GGAGTTGTACAAGGCGTACCAAAAGAAAAGAGTTGAACAAGTTGATGATGACAGGTTGAAGTTTGAAATCAGCACAATGCTTTCCAGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTGAAATGTCTTTGAGTTCAAATATTGATAAG...............................................................................................................................CCAGAAGAGGTTAAATTTGCTGTCCCACTGCTGGATTTGGATTTAAACAAAATGGTTGCAGGATCCACTTGGCGCCATCCACAGAAGATATACCTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATATATCCAGTTGGCAGGAAATACTCCAGTGCTCCTTCTGCCCCACGTTTGAAATTGGTATCTTCTCCTGAATTGAAGGCTGTCTTCTCAATTGATGATTTCAGGCTTCCTCCATGGTTGGATGGAAT......................................................................................................................................................GTGTATGGCTGAGTACCTTCCGACATTAGAAGAGATGCTTGAATCACAG......................................................................................ATTAAAGATGCAGTTGCATCCATTGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431227" ref_strand="-" ref_description="SGN-E431227 [STM-55-I19]">
      <seq>agaagatatacctacaggttatatatccagttggcaggaaatactccagtgctccttctgccccacgtttgaaattggtatcttctcctgaattgaaggctgtcttctcaattgatgatttcaggcttcctgcctggttggatggaatgtgcatggctgagtaccttccgactttagaagagatgcttgaatcacagattaaagatgcagttgcatccattgaaagtagaaggaagctcattatggcattagctcctctttttggaaggccagtggaagcagatccacttttctgcaggaaggcgacctttctatcttcctctggggtatttacttttctggttcatgttgccatcccacttcagttccctaagcagcagccaagtttgatgcttcagagttcccagcactttaattctcaaggtctgcccatcaagtctccagtcactactgaatacccgtggagtcccagatgggaaacatcagatatggctgagcggatctttgatttcattgtggaagaatgcttgaatttcaagaaatactgcaacgaatccatgcttcaaaatcgatgaaagcagctgttacaagaattcgtttgttctacattttggtgacgtcctgtattcaagtctttagctgttgatctttgtattgtaatgtttccatatgtgcagaagaaagaccccaaaaggacctaacaactttctaatttcgtatgtttttctaatttgagtaatgataatatttctgccaatttagtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="46278" stop="49038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46589" g_stop="46719" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="148" r_length="131" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46720" i_stop="46869" i_length="150">
            <donor d_prob="0.307" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46870" g_stop="46918" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="197" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46919" i_stop="47004" i_length="86">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47005" g_stop="47094" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="287" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47095" i_stop="47173" i_length="79">
            <donor d_prob="0.943" d_score="0.96"/>
            <acceptor a_prob="0.347" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47174" g_stop="47227" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="341" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47228" i_stop="47700" i_length="473">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47701" g_stop="47766" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="407" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47767" i_stop="48322" i_length="556">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48323" g_stop="48420" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="505" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48421" i_stop="48506" i_length="86">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48507" g_stop="48716" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="716" r_length="211" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E431227" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E431227" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46589" e_stop="46719"/>
          <exon e_start="46870" e_stop="46918"/>
          <exon e_start="47005" e_stop="47094"/>
          <exon e_start="47174" e_stop="47227"/>
          <exon e_start="47701" e_stop="47766"/>
          <exon e_start="48323" e_stop="48420"/>
          <exon e_start="48507" e_stop="48716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATATATCCAGTTGGCAGGAAATACTCCAGTGCTCCTTCTGCCCCACGTTTGAAATTGGTATCTTCTCCTGAATTGAAGGCTGTCTTCTCAATTGATGATTTCAGGCTTCCTCCATGGTTGGATGGAATGTAAGTTCTGATTATTGCTGCAGAAGCAAGCAGCCTTGTCAACCCTTCTCCTATTTGAGGAGCATTTTTGTTATGCTATCCTTTCCAACAAAGTTGCGGTATCATCTTATGTTCATAATTCTTTTCTCTTTCTTCTTTTTAAATTTTTAGGTGTATGGCTGAGTACCTTCCGACATTAGAAGAGATGCTTGAATCACAGGTTAATTACTAATTTCTCCATTGGGGTTTATGCCAAATTATTTTGTTAAAGTTCTCTTTCCTGTTTTGTCCATCTGCTCTTGACAGATTAAAGATGCAGTTGCATCCATTGAAAGTAGAAGGAAGCTCATTATAGCATTAGCTCCTCTCTTTGGAAGGCCAGTGGAAGCAGATCCAGTATGCAATATTAATTCTTTAGTAATTAGTATGTCCGCTGATAGATGGCATGTTTAATGATCCTTTCTTCGTTTGTCAGCTTTTCTGCAGGAAGGCGACCTTTCTATCTTCCTCTGGGGTATTTACTTTTCTGGTACGGTAACTTAATAACTTGTAAGCAGACACACAAAGTAGAAATTTCTTTCCTGATGTGATTGCTTGGAGGCATTTTATTAATTAATTAAAGCATGTTCTCGGGACGACTGGGTGCATAAGTTTCAGTTTTGCTTCTCAAGAGGGAGGGGGAGGAGAAGACTTTGATAGCTGAAAAACGATGGACAATTGAGTAGGATTTCAAATGAATGCAAACACCTGATACAAAGTAGTCCATACATCTATAAGAATAACTCAAAAACATAGAGAAACTGGTCATGGTCTTACCTATATTTGCAATTCTTTCAGCAAATATGTTGCTCTTTTTTCTTCCACATGATAAAGCTTTGTTTGACATGCTGACTGGAGACCATGTTCCCTTGATTGATTATCTTTGCTTCTGCTGCTTATATCTAAATGTTATTGATGAGCGATTATTAGTAGATAAATCTTATAATATCCTTTATATTTTAGGTTCATGTTGCCATCCCACTTCAGTTCCCTAAGCAGCAGCCAAGTTTGATGCTTCAGAGTTCCCAGGTAAATAGTTTGTTTAGGTCCCCTTGAACTATATTGGTGCCTTCTTACCTTTACTATATTTTATTTTTTTCCTCCATGTACCTTTTCTTTTTATTTGCCACACTTGAGCTGAGGGTGGAAACAACCTCTCTACCTCCATGAGGTTGGGGTACGATGGTCTGCATATACTCTACTCTCTGCAGACCTCACTTGTGGAATTTCACTGGTTATGTTGTTGATCTTGTTGTTCAATAACGTGACAGGATTTATTTTTTTAAGAAAGATAACGTGACAGGATTTTAGATATTTTGGTATGGTTGTTTGTAATACTCGAGCGTTTTTTAGTTTGCCTTCATGAACATGTAAATATTTAGGCATAGAACCTTTTTGTGAAAAAAATGTAGTGGTTATGCCCCAATTCTTGCCCGCCATTCTGTGATAGGAGTGGCATACTTCTCATCTTTCCCTTCTACTCATCTGTTTGTGCTTCTTGATTGGTATCGAGGTGTAGTAGTAGTTGTTGTTGTAGTATCAATTGACTTGGTGCTCATATCTGTGCACTGGCATGTTTGTATAGCACTTTAATTCTCAAGGTCTACCCATCAAGTCTCCAGTCACTGCTGAGTACCCGTGGAGTCCCAGATGGGAAACATCAGATATGGCTGAGCGGATCTTGTAAGTTTCCACTTGTTGCTGCTTTTATGATGAAAAAGGTTGCTATTTGTGTCACTAACACGACTTTCTGAAATCAAATTTTGTAGTGATTTCATTGTGGAAGAATGCTTGAATTTCAAGAAATACTGCAACGAATCCATGCTTCAGAATCGATGAAAGCAGCTGTTACAAGAATTCGTTTGTTCTACATTTTGGTGATGTCCTGTATTCAAGTCTTTAGCTGTTGATCTTTGTATTGTAATGTTTCTAGATGTGCATAAGAAAGACCCC-AAAGGACATATAAACTTCCTAATTTC</genome_strand>
        <mrna_strand>GTTATATATCCAGTTGGCAGGAAATACTCCAGTGCTCCTTCTGCCCCACGTTTGAAATTGGTATCTTCTCCTGAATTGAAGGCTGTCTTCTCAATTGATGATTTCAGGCTTCCTGCCTGGTTGGATGGAAT......................................................................................................................................................GTGCATGGCTGAGTACCTTCCGACTTTAGAAGAGATGCTTGAATCACAG......................................................................................ATTAAAGATGCAGTTGCATCCATTGAAAGTAGAAGGAAGCTCATTATGGCATTAGCTCCTCTTTTTGGAAGGCCAGTGGAAGCAGATCCA...............................................................................CTTTTCTGCAGGAAGGCGACCTTTCTATCTTCCTCTGGGGTATTTACTTTTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATGTTGCCATCCCACTTCAGTTCCCTAAGCAGCAGCCAAGTTTGATGCTTCAGAGTTCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTTTAATTCTCAAGGTCTGCCCATCAAGTCTCCAGTCACTACTGAATACCCGTGGAGTCCCAGATGGGAAACATCAGATATGGCTGAGCGGATCTT......................................................................................TGATTTCATTGTGGAAGAATGCTTGAATTTCAAGAAATACTGCAACGAATCCATGCTTCAAAATCGATGAAAGCAGCTGTTACAAGAATTCGTTTGTTCTACATTTTGGTGACGTCCTGTATTCAAGTCTTTAGCTGTTGATCTTTGTATTGTAATGTTTCCATATGTGCAGAAGAAAGACCCCAAAAGGACCTAACAACTTTCTAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698451" ref_strand="+" ref_description="SGN-E698451 [FA06BD12]">
      <seq>tcattaccactagaaatatcactctctttcccatttctcccttcatcttcatcttcatcttcatctcttcttcttcttattctctcattcctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttccccttctccaaaggtgtctgacactgttgtagaaccatacaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50267" stop="52499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50567" g_stop="51097" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52199" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="692" r_length="161" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E698451" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50567" e_stop="51097"/>
          <exon e_start="52040" e_stop="52199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTACCACTAGAAATATCACTCTCTTTCCCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTT-CCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGC</genome_strand>
        <mrna_strand>TCATTACCACTAGAAATATCACTCTCTTTCCCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745045" ref_strand="+" ref_description="SGN-E745045 [GI|77963734]">
      <seq>ggctctttcccatttctcccttcatcttcatcttcatcttcatctcttcttcttcttattctctcattcctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcgtcctactttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacgtttgttggaaattcaacctccattcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttcactgaagccgagagcaacatgaatgatttggttgcagaatatcaacaataccaggatgctacagcagatgatgaggaagagtatgatgatgatgaggttgctgatgatcaataccaatcctaaaaacttctctacatttgatatattgttggtttgttcaatttctgccaagtgaacttgttatgtttcctattgtcttctcttcatttgaactttgtgtttggtttgttgagaaatgaaatgtcttttattggtctatatgaatatactgtattacagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50290" stop="53537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50588" g_stop="51097" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="780" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="53237" g_length="841"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="1621" r_length="841" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1622" polyA_stop="1656"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E745045" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1621</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50588" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="53237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTTCCCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTATATGAATATACTGTATTACAGTA</genome_strand>
        <mrna_strand>GGCTCTTTCCCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTATATGAATATACTGTATTACAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746802" ref_strand="+" ref_description="SGN-E746802 [GI|47104480]">
      <seq>ctctttcccatttctcccttcatcttcatcttcatcttcatctcttcttcttcttattctctcattcctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcgtcctactttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacgtttgttggaaattcaacctccattcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttcactgaagccgagagcaacatgaatgatttggttgcagaatatcaacaataccaggatgctacagcagatgatgaggaagagtatgatgatgatgaggttgctgatgatcaataccaatcctaaaaacttctctacatttgatatattgttggtttgttcaatttctgccaagtgaacttgttatgtttcctattgtcttctcttcatttgaactttgtgtttggtttgttgagaaatgaaatgtcttttattggtctatatgaatatactgtattacagtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50290" stop="53537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50590" g_stop="51097" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="778" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="53237" g_length="841"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="1619" r_length="841" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1620" polyA_stop="1633"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E746802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1619</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50590" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="53237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCCCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTATATGAATATACTGTATTACAGTA</genome_strand>
        <mrna_strand>CTCTTTCCCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTATATGAATATACTGTATTACAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454940" ref_strand="+" ref_description="SGN-E454940 [cSTS-24-H16]">
      <seq>ctctttcccatttctcccttcatctacatcttcatctcttcttcttcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtggagaatgctgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcaggactttgaagctcactactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50313" stop="52603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50590" g_stop="51097" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52303" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="762" r_length="264" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E454940" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50590" e_stop="51097"/>
          <exon e_start="52040" e_stop="52303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCCCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTC</genome_strand>
        <mrna_strand>CTCTTTCCCATTTCTCCCTTCATC-T-A----CATCTTCATCTCTTCTTCTTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGGACTTTGAAGCTCACTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310068" ref_strand="+" ref_description="SGN-E310068 [cLEZ-8-G22]">
      <seq>tctttcccatttctcccttcatcttcatcttcatcttcatctcttcttcttcttattctctcattcctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggaaggactggatctggcatgggaacactactgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50291" stop="52401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50591" g_stop="51097" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52101" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="569" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E310068" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50591" e_stop="51097"/>
          <exon e_start="52040" e_stop="52101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCCCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATT</genome_strand>
        <mrna_strand>TCTTTCCCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAAGGACTGGATCTGGCATGGGAACACTACTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321036" ref_strand="+" ref_description="SGN-E321036 [cTOB-13-F16]">
      <seq>tttcccatttctcccttcatcttcatcttcatcttcatctcttcttcttcttattctctcattcctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50293" stop="52402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50593" g_stop="51097" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52102" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="568" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E321036" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50593" e_stop="51097"/>
          <exon e_start="52040" e_stop="52102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTT</genome_strand>
        <mrna_strand>TTTCCCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293299" ref_strand="+" ref_description="SGN-E293299 [cLET-18-F17]">
      <seq>ccgggctgtaggttcatcttcatcttcatcttcatcgcttcttcttcttattctctcattcctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctgctccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50308" stop="51394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50596" g_stop="51094" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E293299" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50596" e_stop="51094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGC</genome_strand>
        <mrna_strand>CCGGGCTGTAGGTTCATCTTCATCTTCATCTTCATCGCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGCTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482307" ref_strand="+" ref_description="SGN-E482307 [cSTD-21-D16]">
      <seq>cccatttctcccttcatctacatcttcatctcttcttcttcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50313" stop="51248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50596" g_stop="50948" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E482307" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.029" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50596" e_stop="50948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGG</genome_strand>
        <mrna_strand>CCCATTTCTCCCTTCATC-T-A----CATCTTCATCTCTTCTTCTTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E564433" ref_strand="+" ref_description="SGN-E564433 [2682]">
      <seq>cccatttctcccttcatctacatcttcatctcttcttcttcttctctctccattctctcatcaattttttcacagaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaggaactgccgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50313" stop="51117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50596" g_stop="50819" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E564433" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="1.047" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E564433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50596" e_stop="50819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGA</genome_strand>
        <mrna_strand>CCCATTTCTCCCTTCATCTACATCTTCATC-TC-T-TCTTCTTCTTC-T-CTCTC-CATT-CTCTCATCAATTTTT-TCA-CAGAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTAC-AAGGAACTGCCGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317785" ref_strand="+" ref_description="SGN-E317785 [cTOA-30-G24]">
      <seq>ccatttctcccttcatcttcatcttcatcttcatctcttcttcttcttattctctcattcctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaacatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacacgaagctctatatgatatttgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50297" stop="52581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50597" g_stop="51097" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52281" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="741" r_length="240" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E317785" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50597" e_stop="51097"/>
          <exon e_start="52040" e_stop="52281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTC</genome_strand>
        <mrna_strand>CCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAA-CATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGAC-ACGAAGCTCTATATGATATTTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481631" ref_strand="+" ref_description="SGN-E481631 [cSTD-18-J20]">
      <seq>ctctctttcccatttctcccttcatcttcatctcttcttcctcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcatctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtacaatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctggaaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaggtaagggaggagtatccagacaggatgatgctcacattctctgtttcccttctccaaagtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtgagaatgctgatgaatgtatggtccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50319" stop="52552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50597" g_stop="51097" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52252" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="703" r_length="209" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E481631" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50597" e_stop="51097"/>
          <exon e_start="52040" e_stop="52252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTG</genome_strand>
        <mrna_strand>CTCTCTTTCCCAT-TTC-TC-CCTTCATCTTCATCTCTTCTTCCTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCATCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACAATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGAAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCC-AGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTG-TTTCCCTTCTCCAAA-GTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGT-GAGAATGCTGATGAATGTATGGTCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336130" ref_strand="+" ref_description="SGN-E336130 [cTOE-12-G3]">
      <seq>ccatttctcccttcatcttcatcttcatcttcatctcttcttcttcttattctctcattcctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50297" stop="52479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50597" g_stop="51097" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52179" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="641" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E336130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50597" e_stop="51097"/>
          <exon e_start="52040" e_stop="52179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACT</genome_strand>
        <mrna_strand>CCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336132" ref_strand="+" ref_description="SGN-E336132 [cTOE-12-G7]">
      <seq>ccatttctcccttcatcttcatcttcatcttcatctcttcttcttcttattctctcattcctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50297" stop="52440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50597" g_stop="51097" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52140" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="602" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E336132" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50597" e_stop="51097"/>
          <exon e_start="52040" e_stop="52140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTC</genome_strand>
        <mrna_strand>CCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301139" ref_strand="+" ref_description="SGN-E301139 [cLEW-22-E24]">
      <seq>ccatttctcccttcatcttcatcttcatcttcatctcttcttcttcttattctctcattcctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaaacggagaattgtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50297" stop="51388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50597" g_stop="51088" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E301139" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50597" e_stop="51088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATT</genome_strand>
        <mrna_strand>CCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAACGGAGAATTGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321037" ref_strand="+" ref_description="SGN-E321037 [cTOB-13-F18]">
      <seq>ccatttctccctacatctacatctccagggtcattttttcttcttcttattctctcatccctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagctagaacgtatcaatgtttatctcaatgaagcttctggtggacgttatgttcctagggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50327" stop="51191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50597" g_stop="50891" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E321037" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50597" e_stop="50891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGC</genome_strand>
        <mrna_strand>CCATTTCTCCCTACATCTACATCTCCAGGGTCATTTTTTCTTCTTCTTATTCTCTCATCCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTAGAACGTATCAATGTTTATCTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342191" ref_strand="+" ref_description="SGN-E342191 [cTOF-10-F8]">
      <seq>catttctcccttcatcttcatcttcatcttcatctcttcttcttcttattctctcattcctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcngtgcaccaattggtggagaatgccgatgaatgtatggtccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50298" stop="52552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50598" g_stop="51097" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52252" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="713" r_length="213" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E342191" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50598" e_stop="51097"/>
          <exon e_start="52040" e_stop="52252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTG</genome_strand>
        <mrna_strand>CATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCNGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320934" ref_strand="+" ref_description="SGN-E320934 [cTOB-13-C4]">
      <seq>catttctcccttcatcttcatcttcatcttcatctcttcttcttcttattctctcattcctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50298" stop="52461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50598" g_stop="51097" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52161" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="622" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E320934" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50598" e_stop="51097"/>
          <exon e_start="52040" e_stop="52161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCT</genome_strand>
        <mrna_strand>CATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704542" ref_strand="+" ref_description="SGN-E704542 [FA24CC12]">
      <seq>cgtatttctcccttcatcttcatctcatctcttcttcttcttctctctcatttctctcatcaaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcaaaactttgaagctcactactccaagttttggggacttgaaccatttgatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50313" stop="52722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50600" g_stop="51097" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="765" r_length="270" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.98"/>
            <acceptor a_prob="0.861" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52422" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="791" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E704542" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50600" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATC-AATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCT</genome_strand>
        <mrna_strand>CGTATTTC-TC-CCTTCATCTTCATCT-CATCTCTTCTTCTTCTT-CTCTCTCATTTCTCTCATCAAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAAAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGGGACTTGAACCATTTGATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726621" ref_strand="+" ref_description="SGN-E726621 [LA12BD12]">
      <seq>atttctcccttcatcttcatctcatctcttcttcttcttctctctcatttctctcatcaaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50313" stop="52752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50603" g_stop="51097" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="762" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52452" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="818" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E726621" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50603" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATC-AATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTG</genome_strand>
        <mrna_strand>ATTTC-TC-CCTTCATCTTCATC-TCATCTCTTCTTCTTCTT-CTCTCTCATTTCTCTCATCAAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438916" ref_strand="+" ref_description="SGN-E438916 [cSTA-10-A8]">
      <seq>tttctcccttcatctacatcttcatctcttcttcttcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50313" stop="51357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50604" g_stop="51057" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E438916" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50604" e_stop="51057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGAT</genome_strand>
        <mrna_strand>TTTCTCC--CTTCATCTACATCTTCATCTCTTCTTCTTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416541" ref_strand="+" ref_description="SGN-E416541 [STM-23-M23]">
      <seq>tttctcccttcatctacatcttcatctcttcttcttcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50313" stop="51326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50604" g_stop="51026" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E416541" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50604" e_stop="51026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGA</genome_strand>
        <mrna_strand>TTTCTCC--CTTCATCTACATCTTCATCTCTTCTTCTTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416542" ref_strand="+" ref_description="SGN-E416542 [STM-23-M23]">
      <seq>tttctcccttcatctacatcttcatctcttcttcttcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctgggggacgttatgttcctagggctgggcttatggatctagagcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50313" stop="51214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50604" g_stop="50914" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E416542" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50604" e_stop="50914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTG</genome_strand>
        <mrna_strand>TTTCTCC--CTTCATCTACATCTTCATCTCTTCTTCTTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGGGGACGTTATGTTCCTAGGGCTGGGCTTATGGATCTAGAGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589245" ref_strand="+" ref_description="SGN-E589245 [42815]">
      <seq>ctcccttcatctacatcttcatctcttcttcttcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtggagaatgctgatgaatgtatggtccttgacaacgaaggctctatatgatatttgtttcaggactttgaagctcactactccaagttttggtgacttgaaccaatttgatctctgcaaccatgagtgggtgttacttgctgtttgagattccctgggncagctgaaactcagaactgaggaaattgggtggtgaatttaatcccctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50313" stop="52763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50608" g_stop="51097" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="756" r_length="271" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.94"/>
            <acceptor a_prob="0.861" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52513" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="878" r_length="122" r_score="0.872"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E589245" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50608" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAA-GCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACC-ATTTGATCTCTGCAACCATGAGT-GGTGTTACTTGCTGTTTGAGATTCCCT-GGTCAGCTG-AACTCAGACCTGAGGAAATTGGCT-GTGAATTTAATTCCCTTCC</genome_strand>
        <mrna_strand>CTC-CCTTCATCTACATCTTCATCTCTTCTTCTTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGGTCCTTGACAACGAAGGCTCTATATGATATTTGTTTCAGGACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCAATTTGATCTCTGCAACCATGAGTGGGTGTTACTTGCTGTTTGAGATTCCCTGGGNCAGCTGAAACTCAGAACTGAGGAAATTGGGTGGTGAATTTAATCCCCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414450" ref_strand="+" ref_description="SGN-E414450 [STM-19-F13]">
      <seq>tctcccttcatctacatcttcatctcttcttcttcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactgaacgcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaaacggagaattgtgattgcttgcaaggattccaggttagtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50313" stop="52449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50608" g_stop="51097" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52149" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="596" r_length="110" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E414450" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50608" e_stop="51097"/>
          <exon e_start="52040" e_stop="52149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCT</genome_strand>
        <mrna_strand>TCTCCCTTCATCTACATCTTCATCTCTTCTTCTTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAACGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAACGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTAGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473868" ref_strand="+" ref_description="SGN-E473868 [cSTB-34-C9]">
      <seq>tctcccttcatctacatcttcatctcttcttcttcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50313" stop="52448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50608" g_stop="51097" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52148" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="595" r_length="109" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E473868" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50608" e_stop="51097"/>
          <exon e_start="52040" e_stop="52148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTC</genome_strand>
        <mrna_strand>TCTCCCTTCATCTACATCTTCATCTCTTCTTCTTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445732" ref_strand="+" ref_description="SGN-E445732 [cSTA-18-I18]">
      <seq>ctcccttcatctacatcttcatctcttcttcttcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattttgggaagtaatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctaaggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50313" stop="51307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50608" g_stop="51007" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E445732" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50608" e_stop="51007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGG</genome_strand>
        <mrna_strand>CTC-CCTTCATCTACATCTTCATCTCTTCTTCTTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTTTGGGAAGTAATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAAGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451035" ref_strand="+" ref_description="SGN-E451035 [cSTS-11-E12]">
      <seq>tttctcccttcatcttcatctcttcttcctcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcatctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtacaatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctggaaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtggagaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50319" stop="52532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50612" g_stop="51097" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52233" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="676" r_length="194" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E451035" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50612" e_stop="51097"/>
          <exon e_start="52040" e_stop="52233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCC</genome_strand>
        <mrna_strand>TTTCTCCCTTCATCTTCATCTCTTCTTCCTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCATCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACAATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGAAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570247" ref_strand="+" ref_description="SGN-E570247 [14801]">
      <seq>tttctcccttcatcttcatctcttcttcctcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgcttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcatctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtacaatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctggaaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggacgaattgtgattgcttgcaaggattccaggtttgtcactcacttgggtgggacggacttggatctggcatgggaacactactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50319" stop="52399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50612" g_stop="51097" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52099" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="547" r_length="63" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E570247" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50612" e_stop="51097"/>
          <exon e_start="52040" e_stop="52099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTG-TTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGA-GAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTT-GGT-GGAGGGAC-TGGATCTGGCATGGGAACACTACTGA</genome_strand>
        <mrna_strand>TTTCTCCCTTCATCTTCATCTCTTCTTCCTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGCTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCATCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACAATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGAAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGACGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGGTGGGACGGACTTGGATCTGGCATGGGAACACTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478026" ref_strand="+" ref_description="SGN-E478026 [cSTD-2-D8]">
      <seq>ccttcatctacatcttcatctcttcttcttcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50313" stop="52399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50612" g_stop="51097" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52099" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="542" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E478026" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50612" e_stop="51097"/>
          <exon e_start="52040" e_stop="52099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGA</genome_strand>
        <mrna_strand>CCTTCATCTACATCTTCATCTCTTCTTCTTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466218" ref_strand="+" ref_description="SGN-E466218 [cPRO-23-F23]">
      <seq>ccttcatctacatcttcatctcttcttcttcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctaaagcctggtactatggatagtatcagaactggtccctatggacagatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50313" stop="51257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50612" g_stop="50957" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E466218" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50612" e_stop="50957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTT</genome_strand>
        <mrna_strand>CCTTCATCTACATCTTCATCTCTTCTTCTTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAAAGCCTGGTACTATGGATAGTATCAGAACTGGTCCCTATGGACAGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624109" ref_strand="+" ref_description="SGN-E624109 [GI|609267]">
      <seq>aattcgcggccgctctcccttcatcttcatcttcatctcttcttcctcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataacttggtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtggagaatgctgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcaggactttgaagctcactactccaagctttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggccagctgaactcagacctgaggaaattggctgtgaatttaatccccttgccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatctctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgccgcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgataaatgtgcagaacaagaactcatcctattttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacatttgttggcaattcaacctccattcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttcactgaagccgagagcaacatgaatgacccggttgcagaatatcaacaataccaggatgctacagcagatgatgaggaagagtatgatgatgaggccgctgatgatcatcaatatgaatcctaaagacttgtctagatttgatatttgttggtttgttcaatttctgccaaagtgaacttgttatgtttcctattgtcttctcttcatttgaactttgtgtttggtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50313" stop="53484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50613" g_stop="51097" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="499" r_length="481" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="769" r_length="270" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.96"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="53184" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="1557" r_length="788" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E624109" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>1543</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50613" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="53184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCC-AAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTG</genome_strand>
        <mrna_strand>CTTCATCTTCATCTTCATCTCTTCTTCCTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTGGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGGACTTTGAAGCTCACTACTCCAAGCT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGCCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATCCCCTTGCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCTCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCCGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATAAATGTGCAGAACAAGAACTCATCCTATTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACATTTGTTGGCAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGACCCGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGAGGCCGCTGATGATCATCAATATGAATCCTAAAGACTTGTCTAGATTTGATAT-TTGTTGGTTTGTTCAATTTCTGCCAAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485597" ref_strand="+" ref_description="SGN-E485597 [cSTE-18-P11]">
      <seq>cttcatctacatcttcatctcttcttcttcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatgcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacgaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactgaaagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50313" stop="51331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50613" g_stop="51031" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E485597" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50613" e_stop="51031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAAT-CGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCG</genome_strand>
        <mrna_strand>CTTCATCTACATCTTCATCTCTTCTTCTTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATGCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACGAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306971" ref_strand="+" ref_description="SGN-E306971 [cLEY-11-H1]">
      <seq>catcttcatcttcatctcttcttcttcttattctctcatgcctctcatgaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50316" stop="52384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50616" g_stop="51097" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52084" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="527" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E306971" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50616" e_stop="51097"/>
          <exon e_start="52040" e_stop="52084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCA</genome_strand>
        <mrna_strand>CATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATGCCTCTCATGAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245090" ref_strand="+" ref_description="SGN-E245090 [cLEF-13-J23]">
      <seq>atcttcatcttcatctcttcttcttcttattctctcattcctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50317" stop="51358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50617" g_stop="51058" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E245090" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50617" e_stop="51058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATG</genome_strand>
        <mrna_strand>ATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463357" ref_strand="+" ref_description="SGN-E463357 [cPRO-14-K22]">
      <seq>cttcatcttcatctcttcttcctcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcatctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtacaatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctggaaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtggagaatgctgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcaggactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50319" stop="52731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50619" g_stop="51097" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="745" r_length="270" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.98"/>
            <acceptor a_prob="0.861" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52431" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="780" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E463357" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50619" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATG</genome_strand>
        <mrna_strand>CTTCATCTTCATCTCTTCTTCCTCTT-CTCTCTCATT-CTCTCATCAATT-TTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCATCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACAATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGAAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGGACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583299" ref_strand="+" ref_description="SGN-E583299 [9120]">
      <seq>cttcatcttcatctcttcttcctcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcaacttgaacgtatcaagtgtttatttcaatgaagcatctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtacaatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctggaaataactgggcgacaaggtcattatactgaaggcgctgagttgatcgatgctgttctcggatgttgttcgtaaagaagcggaaattgtgattgcttggcaaggattccacggtttgtccactcacttggtggagggactggatctggcatgggaacactactgatttccaaagttaaagggaggagtatccagacaggatgatgttcacattctctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50319" stop="52452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50619" g_stop="51097" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52152" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="595" r_length="117" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E583299" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E583299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50619" e_stop="51097"/>
          <exon e_start="52040" e_stop="52152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAA-TGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCA-AAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCT-AGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTT-GCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCA-GGTTTG-CCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCC-AAGGT-AAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTT</genome_strand>
        <mrna_strand>CTTCATCTTCATCTCTTCTTCCTCTT-CTCTCTCATT-CTCTCATCAATT-TTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAAGTGTTTATTTCAATGAAGCATCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACAATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGAAATAACTGGGCGACAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGGATGTTGTTCGTAAAGAAGCGGA-AATTGTGATTGCTTGGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCACGGTTTGTCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAAGTTAAAGGGAGGAGTATCCAGACAGGATGATGTTCACATTCTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624108" ref_strand="+" ref_description="SGN-E624108 [GI|609269]">
      <seq>catcttcatctcttcttcctcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataacttggtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtggagaatgctgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcaggactttgaagctcactactccaagctttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggccagctgaactcagacctgaggaaattggctgtgaatttaatccccttgccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatctctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgccgcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgataaatgtgcagaacaagaactcatcctattttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacatttgttggcaattcaacctccattcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttcactgaagccgagagcaacatgaatgacccggttgcagaatatcaacaataccaggatgctacagcagatgatgaggaagagtatgatgatgaggccgctgatgatcatcatcaatatgaatcctaaagacttgtctagatttgatatttgttggtttgttcaatttctgccaaagtgaacttgttatgtttcctattgtcttctcttcatttgaactttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50322" stop="53475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50622" g_stop="51097" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="742" r_length="270" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.96"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="53175" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="1524" r_length="782" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E624108" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>1525</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50622" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="53175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATG-AG--GTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCC-AAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTG</genome_strand>
        <mrna_strand>CATCTTCATCTCTTCTTCCTCTT-CTCTCTCATT-CTCTCATCAATTTTT-TCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTGGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGGACTTTGAAGCTCACTACTCCAAGCT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGCCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATCCCCTTGCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCTCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCCGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATAAATGTGCAGAACAAGAACTCATCCTATTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACATTTGTTGGCAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGACCCGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGAGGCCGCTGATGATCATCATCAATATGAATCCTAAAGACTTGTCTAGATTTGATAT-TTGTTGGTTTGTTCAATTTCTGCCAAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347478" ref_strand="+" ref_description="SGN-E347478 [cTOF-33-D4]">
      <seq>atcttcatctcttcttcttcttattctctcattcctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50323" stop="51119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50623" g_stop="50819" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E347478" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>197</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50623" e_stop="50819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGA</genome_strand>
        <mrna_strand>ATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485476" ref_strand="+" ref_description="SGN-E485476 [cSTE-18-K9]">
      <seq>cttcatctcttcttcttcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgattttccaggtaagggaggagtatccagacaggatgatgctcacattctctgttttccttctccaaggtgtctgacactgntgtagaaccatacatgctacattgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50325" stop="52508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50625" g_stop="51097" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52209" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="636" r_length="167" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E485476" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50625" e_stop="51097"/>
          <exon e_start="52040" e_stop="52209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCG</genome_strand>
        <mrna_strand>CTTCATCTCTTCTTCTTCTT-CTCTCTCATT-CTCTCATCAATTTTT-TCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTTCCAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTT-CCTTCTCC-AAGGTGTCTGACACTGNTGTAGAACCATAC-ATGCTACATTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360715" ref_strand="+" ref_description="SGN-E360715 [cLPP-7-P14]">
      <seq>ttcatctcttcttcttcttctctctcattctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcccaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggctttgatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50326" stop="51370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50626" g_stop="51070" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E360715" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50626" e_stop="51070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAG</genome_strand>
        <mrna_strand>TTCATCTCTTCTTCTTCTT-CTCTCTCATT-CTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCCACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGCTTTGATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327347" ref_strand="+" ref_description="SGN-E327347 [cTOC-19-N4]">
      <seq>tcatctcttcttcttcttattctctcattcctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgattttccaggtaagggaggagtatccagacaggatgatgctcacattctctgttttccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50327" stop="52459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50627" g_stop="51097" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52159" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="591" r_length="120" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E327347" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50627" e_stop="51097"/>
          <exon e_start="52040" e_stop="52159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTT</genome_strand>
        <mrna_strand>TCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTTCCAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707832" ref_strand="+" ref_description="SGN-E707832 [FA34AD06]">
      <seq>cgctcgaggttcttcttctctctcatttctctcatcaaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcaactgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgcccactaacctctcgtggatcacagcaatacatatcgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50337" stop="52885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50629" g_stop="51097" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="740" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52585" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="928" r_length="188" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E707832" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>928</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50629" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTC-TTCTTCTTCTTATTCTCTCATTCCTCTCATC-AATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAA</genome_strand>
        <mrna_strand>CGCTCGAGGTTCTTCTT-CTCTCTCATTTCTCTCATCAAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAACTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTG-CCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442962" ref_strand="+" ref_description="SGN-E442962 [cSTA-35-L23]">
      <seq>ctcttcttcttcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50331" stop="52400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50631" g_stop="51097" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52100" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="524" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E442962" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50631" e_stop="51097"/>
          <exon e_start="52040" e_stop="52100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGAT</genome_strand>
        <mrna_strand>CTCTTCTTCTTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345341" ref_strand="+" ref_description="SGN-E345341 [cTOF-13-G11]">
      <seq>tcttcttcttcttattctctcattcctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacnactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50332" stop="52554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50632" g_stop="51097" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52254" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="682" r_length="216" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E345341" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50632" e_stop="51097"/>
          <exon e_start="52040" e_stop="52254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTAC-ACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGAC</genome_strand>
        <mrna_strand>TCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACNACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465593" ref_strand="+" ref_description="SGN-E465593 [cPRO-21-J23]">
      <seq>cttcttcttcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcacttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtggagaatgctgatgaatgtatggtcccttgacacgaagctctatatgatatttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50333" stop="52580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50633" g_stop="51097" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52280" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="702" r_length="241" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E465593" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50633" e_stop="51097"/>
          <exon e_start="52040" e_stop="52280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGT-CCTTGACAACGAAGCTCTATATGATATTTGTTT</genome_strand>
        <mrna_strand>CTTCTTCTTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCACTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGGTCCCTTGAC-ACGAAGCTCTATATGATATTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727386" ref_strand="+" ref_description="SGN-E727386 [LA14CB12]">
      <seq>cgcttcttcattctctctcatttctctcatcaaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcaactgaactcagaccctgagaaattggctgtgaattaaatccctttccacgtcttcacttcttcatggtgggatttgcccactaacctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50336" stop="52857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50634" g_stop="51097" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="735" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52557" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="894" r_length="159" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E727386" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50634" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCTTATTCTCTCATTCCTCTCATC-AATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCT</genome_strand>
        <mrna_strand>CGCTTCTTCATTCTCTCTCATTTCTCTCATCAAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAACTGAACTCAGACCCTGAGAAATTGGCTGTGAA-TTAAATCCCTTTCCACGTCTTCACTTCTTCATGGTGGGATTTG-CCCACTAACCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340977" ref_strand="+" ref_description="SGN-E340977 [cTOF-5-F15]">
      <seq>ttcttcttcttattctctcattcctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacacntgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatattttgtttcagaactttgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50334" stop="52595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50634" g_stop="51097" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52295" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="722" r_length="258" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E340977" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50634" e_stop="51097"/>
          <exon e_start="52040" e_stop="52295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACAC-TGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATA-TTTGTTTCAGAACTTTGAAGCT</genome_strand>
        <mrna_strand>TTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACNTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTTGTTTCAGAACTTTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485634" ref_strand="+" ref_description="SGN-E485634 [cSTE-18-J24]">
      <seq>ttcttcttcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtggagaatgctgatgaatgtatggtccttgacaacgaagctctatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50334" stop="52570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50634" g_stop="51097" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52270" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="691" r_length="231" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E485634" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50634" e_stop="51097"/>
          <exon e_start="52040" e_stop="52270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATG</genome_strand>
        <mrna_strand>TTCTTCTTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGGTCCTTGACAACGAAGCTCTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570769" ref_strand="+" ref_description="SGN-E570769 [15406]">
      <seq>ttcttcttcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggaaggactggatctggcatgggaacactactgatttccaaggtaaaggaggagtatccagacaggatgatgctcacattctctgttttcccttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50334" stop="52463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50634" g_stop="51097" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52163" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="584" r_length="124" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E570769" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50634" e_stop="51097"/>
          <exon e_start="52040" e_stop="52163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCC</genome_strand>
        <mrna_strand>TTCTTCTTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAAGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAAGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344390" ref_strand="+" ref_description="SGN-E344390 [cTOF-14-A15]">
      <seq>ttcttcttcttattctctcattcctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgcccctcacttgggggagggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50334" stop="52373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50634" g_stop="51097" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52073" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="498" r_length="34" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E344390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50634" e_stop="51097"/>
          <exon e_start="52040" e_stop="52073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGAC</genome_strand>
        <mrna_strand>TTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCCCTCACTTGGGGGAGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698957" ref_strand="+" ref_description="SGN-E698957 [FA08AE05]">
      <seq>ccttcttcttctctctcatttctctcatcaaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgctcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaacccatacaatgctacactgtcggcgcaccaattggtggacaatgccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50336" stop="52535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50635" g_stop="51097" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52235" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="660" r_length="197" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E698957" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50635" e_stop="51097"/>
          <exon e_start="52040" e_stop="52235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTATTCTCTCATTCCTCTCATCA-ATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAA-CCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGA</genome_strand>
        <mrna_strand>CCTTCTTCTT-CTCTCTCATTTCTCTCATCAAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGCTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCCATACAATGCTACACTGTCGGCGCACCAATTGGTGGACAATGCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578945" ref_strand="+" ref_description="SGN-E578945 [86068]">
      <seq>ttcttcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacaatctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtggagaatgctgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcaggactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50337" stop="52733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50637" g_stop="51097" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="727" r_length="270" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.98"/>
            <acceptor a_prob="0.861" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52433" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="764" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E578945" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50637" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAG</genome_strand>
        <mrna_strand>TTCTTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAATCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGGACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402786" ref_strand="+" ref_description="SGN-E402786 [PPC-8-P13]">
      <seq>cctcttctctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcatctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtacaatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctggaaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtggagaatgctgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcaggactttgaaactcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50342" stop="52747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50639" g_stop="51097" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="725" r_length="270" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.96"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52447" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="776" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E402786" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50639" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCT</genome_strand>
        <mrna_strand>CCTCTT-CTCTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCATCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACAATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGAAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGGACTTTGAAACTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361603" ref_strand="+" ref_description="SGN-E361603 [cLPP-6-N12]">
      <seq>cttcttctctctcattctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcccaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50339" stop="51347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50639" g_stop="51047" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E361603" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50639" e_stop="51047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGC</genome_strand>
        <mrna_strand>CTTCTTCT-CTCTCATT-CTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCCACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700424" ref_strand="+" ref_description="SGN-E700424 [FA13AD02]">
      <seq>cccttctctctcatttcactcatcaaaattttttcatcaaaaaaacctaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggaaaatgccgatgaatgtatggtcccttgacaccaaaactctatatgatatttgtttcaaaaactttgaagctcactactccaagttttggtgaacttgaaccatttgatctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50342" stop="52723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50641" g_stop="51097" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="731" r_length="272" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.92"/>
            <acceptor a_prob="0.861" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52423" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="759" r_length="28" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E700424" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50641" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATTCTCTCATTCCTCTCATC-AATTTTTTTCATCAAAAAAA-CTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGT-CCTTGACAACGAAGCTCTATATGATATTTGTTTC-AGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTG-ACTTGAACCATTTGATCTCTG</genome_strand>
        <mrna_strand>CCCTTCTCTCTCATTTCACTCATCAAAATTTTTTCATCAAAAAAACCTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAAAATGCCGATGAATGTATGGTCCCTTGACACCAAAACTCTATATGATATTTGTTTCAAAAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGAACTTGAACCATTTGATCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708622" ref_strand="+" ref_description="SGN-E708622 [FA36BB02]">
      <seq>cttctctctcatttctctcatcaaattttttttatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgactttgaaccatttgatctctgcaaccatgaatggtgttacttgctgtttgagattccccggtcaactgaactcaaacctgaggaaattggctgtgaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50347" stop="52802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50642" g_stop="51097" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="726" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52502" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="833" r_length="107" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E708622" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50642" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTCTCTCATTCCTCTCATC-AATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGAC-TTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTT</genome_strand>
        <mrna_strand>CTT-CTCTCTCATTTCTCTCATCAAATTTTTTTTATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTTGAACCATTTGATCTCTGCAACCATGAATGGTGTTACTTGCTGTTTGAGATTCCCCGGTCAACTGAACTCAAACCTGAGGAAATTGGCTGTGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487957" ref_strand="+" ref_description="SGN-E487957 [cSTE-27-G7]">
      <seq>cttcgctctaagtcactcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctaaggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactgggcgacaggtcattatactgaaggcgctgagttgatcgatgctgttctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50348" stop="51356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50642" g_stop="51056" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E487957" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50642" e_stop="51056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGA</genome_strand>
        <mrna_strand>CTT-CGCTCTAAGT-CACTCATCAATTTTT-TCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAAGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGACAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701951" ref_strand="+" ref_description="SGN-E701951 [FA17BF02]">
      <seq>ctctctcatttctctcatcaaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcaactgaactcagacctgaggaaattggctgtgaatttaatcccttcccacgtcttcacttcttcatggtgggatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50347" stop="52843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50646" g_stop="51097" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="723" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52543" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="869" r_length="146" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E701951" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50646" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCATTCCTCTCATC-AATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTG</genome_strand>
        <mrna_strand>CTCTCTCATTTCTCTCATCAAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAACTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAA-TCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729439" ref_strand="+" ref_description="SGN-E729439 [LA21AC08]">
      <seq>ctctctcatttctctcatcaaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcaactgaactcaaacctgaggaaattggctgtgaatttaattcccttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50347" stop="52814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50646" g_stop="51097" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="723" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52514" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="841" r_length="118" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E729439" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50646" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCATTCCTCTCATC-AATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCC</genome_strand>
        <mrna_strand>CTCTCTCATTTCTCTCATCAAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAACTGAACTCAAACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731722" ref_strand="+" ref_description="SGN-E731722 [LA28AA05]">
      <seq>ctctctcatttctctcatcaaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcaactgaactcagacctgaggaaattggctgtgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50347" stop="52801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50646" g_stop="51097" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="723" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52501" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="828" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E731722" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50646" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCATTCCTCTCATC-AATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATT</genome_strand>
        <mrna_strand>CTCTCTCATTTCTCTCATCAAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAACTGAACTCAGACCTGAGGAAATTGGCTGTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203437" ref_strand="+" ref_description="SGN-E203437 [cLEC-15-A1]">
      <seq>tctctcattcctctcatcaatttttttcatcaaaaaaactcagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50347" stop="51165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50647" g_stop="50865" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E203437" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50647" e_stop="50865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCT</genome_strand>
        <mrna_strand>TCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTCAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473068" ref_strand="+" ref_description="SGN-E473068 [cSTB-31-C15]">
      <seq>ctctcattctctcatcaattttttcacaaaaaaactaagagaaaatgatagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcatctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtacaatggatagtatcagatctggcccctatggacagatcttccgtcctgataactttgtgtttggacagactggtgctggaaataactgcgcgaaaggtcattatactgaaagcgctgagttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50348" stop="51341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50648" g_stop="51042" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E473068" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50648" e_stop="51042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATT</genome_strand>
        <mrna_strand>CTCTCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGATAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCATCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACAATGGATAGTATCAGATCTGGCCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGACTGGTGCTGGAAATAACTGCGCGAAAGGTCATTATACTGAAAGCGCTGAGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570730" ref_strand="+" ref_description="SGN-E570730 [15360]">
      <seq>tcattctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcatctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtacaatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctggaaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtggagaatgctgatgaatgtatggtccttgacaacgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50351" stop="52561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50651" g_stop="51097" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52261" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="666" r_length="222" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E570730" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50651" e_stop="51097"/>
          <exon e_start="52040" e_stop="52261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAG</genome_strand>
        <mrna_strand>TCATT-CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCATCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACAATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGAAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGGTCCTTGACAACGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363117" ref_strand="+" ref_description="SGN-E363117 [cLPP-19-A18]">
      <seq>tcattctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcccaccggacgttacaaaggaaccgccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50351" stop="51116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50651" g_stop="50816" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E363117" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>166</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50651" e_stop="50816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGC</genome_strand>
        <mrna_strand>TCATT-CTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCCACCGGACGTTACAAAGGAACCGCCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483137" ref_strand="+" ref_description="SGN-E483137 [cSTE-8-G23]">
      <seq>cgaggctctcactcaattttttccaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattttgggaaagtaatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactggtgtagaaccatacaatgctacattggccgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50371" stop="52512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50652" g_stop="51097" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52212" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="618" r_length="173" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E483137" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50652" e_stop="51097"/>
          <exon e_start="52040" e_stop="52212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGG-AAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTG</genome_strand>
        <mrna_strand>CGAGGCTCTCACTCAATTTTTTC--CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTTTGGGAAAGTAATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGGTGTAGAACCATACAATGCTACATTGGCCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702164" ref_strand="+" ref_description="SGN-E702164 [FA17DH07]">
      <seq>atttctctcatcaaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttcaagctcactactcccagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50353" stop="52746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50653" g_stop="51097" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="716" r_length="270" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.96"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52446" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="766" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E702164" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50653" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTCTCATC-AATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGC</genome_strand>
        <mrna_strand>ATTTCTCTCATCAAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTCAAGCTCACTACTCCCAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487142" ref_strand="+" ref_description="SGN-E487142 [cSTE-24-I10]">
      <seq>attctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcaatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaaaggaggagtatccagacaggatgatgctcacattctctgttttcgcttctccacaagtgtctgacactgttgtagaatcatacaatgctacattgtctgtgcaccaattggtggacaatgctgatgaatgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50353" stop="52545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50653" g_stop="51097" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52245" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="648" r_length="206" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E487142" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50653" e_stop="51097"/>
          <exon e_start="52040" e_stop="52245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATG</genome_strand>
        <mrna_strand>ATTC-TCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCAATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAAGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCGCTTCTCCACAAGTGTCTGACACTGTTGTAGAATCATACAATGCTACATTGTCTGTGCACCAATTGGTGGACAATGCTGATGAATGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340628" ref_strand="+" ref_description="SGN-E340628 [cTOF-1-I20]">
      <seq>ttcctctcaccaatttttttcatcaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcccatcggacgttacaaaggaaccgtcgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50354" stop="52571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50654" g_stop="51097" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52271" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="675" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E340628" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50654" e_stop="51097"/>
          <exon e_start="52040" e_stop="52271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGA</genome_strand>
        <mrna_strand>TTCCTCTCACCAATTTTTTTCATC-AAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCCATCGGACGTTACAAAGGAACCGTCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329158" ref_strand="+" ref_description="SGN-E329158 [cTOD-2-G8]">
      <seq>ttcctctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50354" stop="52449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50654" g_stop="51097" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52149" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="554" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E329158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50654" e_stop="51097"/>
          <exon e_start="52040" e_stop="52149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCT</genome_strand>
        <mrna_strand>TTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579694" ref_strand="+" ref_description="SGN-E579694 [86825]">
      <seq>ctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcatctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtacaatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctggaaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtggagaatgctgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcaggactttgaagctcactactccaagtttgggtgacttgaaccatttgatctctgcaaaccatgaatggtgttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50357" stop="52743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50657" g_stop="51097" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="709" r_length="270" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.98"/>
            <acceptor a_prob="0.861" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52443" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="757" r_length="48" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E579694" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50657" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGC-AACCATGAGTGGTGTTACT</genome_strand>
        <mrna_strand>CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCATCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACAATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGAAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGGACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TGGGTGACTTGAACCATTTGATCTCTGCAAACCATGAATGGTGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569020" ref_strand="+" ref_description="SGN-E569020 [13393]">
      <seq>ctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacaatctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtggagaatgctgatgaatgtatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50357" stop="52546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50657" g_stop="51097" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52246" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="646" r_length="207" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E569020" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50657" e_stop="51097"/>
          <exon e_start="52040" e_stop="52246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGG</genome_strand>
        <mrna_strand>CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAATCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441403" ref_strand="+" ref_description="SGN-E441403 [cSTA-30-C22]">
      <seq>ctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50357" stop="52448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50657" g_stop="51097" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52148" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="548" r_length="109" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E441403" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50657" e_stop="51097"/>
          <exon e_start="52040" e_stop="52148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTC</genome_strand>
        <mrna_strand>CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586029" ref_strand="+" ref_description="SGN-E586029 [73453]">
      <seq>ctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcatctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtacaatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctggaaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctggttctcgatgttgttcgtaaaagaagcggagaattgtgattggcttgcaaggattccaaggtttgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50357" stop="51401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50657" g_stop="51097" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E586029" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E586029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50657" e_stop="51097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCT-GTTCTAGATGTTGTTCGT-AAAGAAGCGGAGAATTGTGATT-GCTTGCAAG</genome_strand>
        <mrna_strand>CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCATCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACAATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGAAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGGTTCTCGATGTTGTTCGTAAAAGAAGCGGAGAATTGTGATTGGCTTGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567045" ref_strand="+" ref_description="SGN-E567045 [11108]">
      <seq>ctctcatcaattttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacaatctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50357" stop="51384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50657" g_stop="51084" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E567045" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50657" e_stop="51084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGT</genome_strand>
        <mrna_strand>CTCTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAATCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267447" ref_strand="+" ref_description="SGN-E267447 [cLEI-8-O18]">
      <seq>tctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50358" stop="52485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50658" g_stop="51097" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52185" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="586" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E267447" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50658" e_stop="51097"/>
          <exon e_start="52040" e_stop="52185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTA</genome_strand>
        <mrna_strand>TCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266277" ref_strand="+" ref_description="SGN-E266277 [cLEI-3-L3]">
      <seq>tctcatcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50358" stop="52440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50658" g_stop="51097" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52140" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="541" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E266277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50658" e_stop="51097"/>
          <exon e_start="52040" e_stop="52140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTC</genome_strand>
        <mrna_strand>TCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248511" ref_strand="+" ref_description="SGN-E248511 [cLEF-59-F11]">
      <seq>ctcatcaattttttcacaaaaaaactaagagaaaatgagagggatccttggcattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50359" stop="52399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50659" g_stop="51097" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52099" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="497" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E248511" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50659" e_stop="51097"/>
          <exon e_start="52040" e_stop="52099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGA</genome_strand>
        <mrna_strand>CTCATCAA-TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGGGATCCTTGGCATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704153" ref_strand="+" ref_description="SGN-E704153 [FA23CA03]">
      <seq>atcaaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcaactgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50362" stop="52845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50662" g_stop="51097" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="707" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52545" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="856" r_length="149" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E704153" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50662" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATC-AATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCC</genome_strand>
        <mrna_strand>ATCAAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAACTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304800" ref_strand="+" ref_description="SGN-E304800 [cLEX-10-K10]">
      <seq>tcaatttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaagcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50363" stop="52399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50663" g_stop="51097" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52099" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="495" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E304800" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50663" e_stop="51097"/>
          <exon e_start="52040" e_stop="52099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGA</genome_strand>
        <mrna_strand>TCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAAGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484976" ref_strand="+" ref_description="SGN-E484976 [cSTE-16-G3]">
      <seq>attttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaggtgtctgacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50368" stop="52479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50667" g_stop="51097" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52179" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="569" r_length="139" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E484976" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50667" e_stop="51097"/>
          <exon e_start="52040" e_stop="52179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACT</genome_strand>
        <mrna_strand>ATTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCC-AAGGTGTCTGACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484914" ref_strand="+" ref_description="SGN-E484914 [cSTE-15-H4]">
      <seq>attttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtatggacaggctggtgctgggaataactgggcgaaaggtcattatactgaatgcgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50368" stop="51334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50667" g_stop="51034" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E484914" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50667" e_stop="51034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTG</genome_strand>
        <mrna_strand>ATTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTATGGACAGGCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAATGCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362903" ref_strand="+" ref_description="SGN-E362903 [cLPP-2-N20]">
      <seq>ttttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcccaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaagagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50368" stop="52543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50668" g_stop="51097" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52243" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="634" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E362903" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50668" e_stop="51097"/>
          <exon e_start="52040" e_stop="52243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTA</genome_strand>
        <mrna_strand>TTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCCACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAAGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E399963" ref_strand="+" ref_description="SGN-E399963 [cSTC-3-F14]">
      <seq>ttttttcacaaaaaaactaagagaaaatgagagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctactggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatttagagcctggtactatggatagtttcatgatttggttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50368" stop="51243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50668" g_stop="50943" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E399963" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E399963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50668" e_stop="50943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCA-GATCTGGTCCC</genome_strand>
        <mrna_strand>TTTTTTCA-CAAAAAAACTAAGAGAAAATGAGAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACTGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATTTAGAGCCTGGTACTATGGATAGTTTCATGATTTGGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361160" ref_strand="+" ref_description="SGN-E361160 [cLPP-13-P9]">
      <seq>tttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcccaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaagagtatccagacaggatgatgctcacattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50369" stop="52447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50669" g_stop="51097" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52147" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="537" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E361160" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50669" e_stop="51097"/>
          <exon e_start="52040" e_stop="52147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCT</genome_strand>
        <mrna_strand>TTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCCACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAAGAGTATCCAGACAGGATGATGCTCACATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307378" ref_strand="+" ref_description="SGN-E307378 [cLEY-12-G23]">
      <seq>tttttcatcaaaaaaactaaaataaaatgagagaatttgttaacatttaaggaggacaccgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagctggaacgtatcaatgtttatttcaatgaagcttatggtggacgttatgttcctagggcggttttgatggatctagagcctgttactatggatagtatcagatctggtccctatggacagatcttacgtgctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggttattatactgaaggcgctgagttgattgatgctgctctagatgttgatcgtaaagaagcgtagaattgcgattgcttgcaaggattccaggtttgccactcacttggtggaaggactggatctggcatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50369" stop="52388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50669" g_stop="51097" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52088" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="478" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E307378" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50669" e_stop="51097"/>
          <exon e_start="52040" e_stop="52088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGG</genome_strand>
        <mrna_strand>TTTTTCATCAAAAAAACTAAAATAAAATGAGAGAATTTGTTAACATTTAAGGAGGACACCGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTGGAACGTATCAATGTTTATTTCAATGAAGCTTATGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGTTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTACGTGCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTTATTATACTGAAGGCGCTGAGTTGATTGATGCTGCTCTAGATGTTGATCGTAAAGAAGCGTAGAATTGCGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAAGGACTGGATCTGGCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310723" ref_strand="+" ref_description="SGN-E310723 [cLEZ-15-C22]">
      <seq>ttttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgctctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttgtggagggactggatctggcatgggaacactactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50370" stop="52399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50670" g_stop="51097" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52099" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="487" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E310723" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50670" e_stop="51097"/>
          <exon e_start="52040" e_stop="52099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGA</genome_strand>
        <mrna_strand>TTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGCTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTT-GTGGAGGGACTGGATCTGGCATGGGAACACTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293932" ref_strand="+" ref_description="SGN-E293932 [cLET-13-K4]">
      <seq>tttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgtgaacactactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50371" stop="52399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50671" g_stop="51097" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52099" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="487" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E293932" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50671" e_stop="51097"/>
          <exon e_start="52040" e_stop="52099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGA</genome_strand>
        <mrna_strand>TTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGTGAACACTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333605" ref_strand="+" ref_description="SGN-E333605 [cTOD-22-B7]">
      <seq>ttcatcaaaaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50372" stop="52731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50672" g_stop="51097" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="696" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52431" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="731" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E333605" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50672" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATG</genome_strand>
        <mrna_strand>TTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323612" ref_strand="+" ref_description="SGN-E323612 [cTOC-2-F22]">
      <seq>aaaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50380" stop="51370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50680" g_stop="51070" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E323612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50680" e_stop="51070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAG</genome_strand>
        <mrna_strand>AAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364679" ref_strand="+" ref_description="SGN-E364679 [cLPP-18-N19]">
      <seq>aaaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcccaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctggtctagatgttgttcgtaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50381" stop="51370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50681" g_stop="51070" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E364679" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50681" e_stop="51070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAG</genome_strand>
        <mrna_strand>AAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCCACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGGTCTAGATGTTGTTCGTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331639" ref_strand="+" ref_description="SGN-E331639 [cTOD-7-M23]">
      <seq>aaactaatagaaaatgagagaaattcttcacattcaaggaggacagtgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgacgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50382" stop="52403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50682" g_stop="51097" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52103" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="480" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E331639" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50682" e_stop="51097"/>
          <exon e_start="52040" e_stop="52103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTC</genome_strand>
        <mrna_strand>AAACTAATAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAGTGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGACGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331640" ref_strand="+" ref_description="SGN-E331640 [cTOD-7-O1]">
      <seq>aaactaagagaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggaaggactggatctggcatgggaacactactgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50382" stop="52401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50682" g_stop="51097" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52101" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="478" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E331640" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50682" e_stop="51097"/>
          <exon e_start="52040" e_stop="52101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATT</genome_strand>
        <mrna_strand>AAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAAGGACTGGATCTGGCATGGGAACACTACTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329945" ref_strand="+" ref_description="SGN-E329945 [cTOD-5-I10]">
      <seq>agaaaatgagagaaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50390" stop="52558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50690" g_stop="51097" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52258" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="627" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E329945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50690" e_stop="51097"/>
          <exon e_start="52040" e_stop="52258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACG</genome_strand>
        <mrna_strand>AGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728958" ref_strand="+" ref_description="SGN-E728958 [LA19CA12]">
      <seq>gtataaattcttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagcctggtgctgaaaatatctgggccaaaggtcattatactgaaggcgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50400" stop="51334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50698" g_stop="51034" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E728958" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50698" e_stop="51034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTG</genome_strand>
        <mrna_strand>GTATAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGCCTGGTGCTGAAAATATCTGGGCCAAAGGTCATTATACTGAAGGCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590179" ref_strand="+" ref_description="SGN-E590179 [43769]">
      <seq>gagaaatccttcacattcaaggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaactgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacaatctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtggagaatgctgatgaatgtatggtccttgacaacgaagctctatatgatattcgttcaggacttgaagctcactactccagttttggtgacttgaaccatttgatctctggcaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50399" stop="52731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50699" g_stop="51097" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="666" r_length="267" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.90"/>
            <acceptor a_prob="0.861" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52431" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="701" r_length="35" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E590179" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50699" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATG</genome_strand>
        <mrna_strand>GAGAAATCCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACTGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAATCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTCG-TTCAGGAC-TTGAAGCTCACTACTCC-AGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGGCACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313891" ref_strand="+" ref_description="SGN-E313891 [cTOA-17-D12]">
      <seq>agaaattcttcacattcaaggaggacgtggtggttaccaaatcggctccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggatttcaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50400" stop="52401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50700" g_stop="51097" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52101" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="460" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E313891" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50700" e_stop="51097"/>
          <exon e_start="52040" e_stop="52101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATT</genome_strand>
        <mrna_strand>AGAAATTCTTCACATTCAAGGAGGACGTGGTGGTTACCAAATCGGCTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313236" ref_strand="+" ref_description="SGN-E313236 [cTOA-18-M23]">
      <seq>cacattcagggaggacaatgtggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttgagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacactgtggaggttgtaattgctgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50410" stop="52402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50710" g_stop="51097" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52102" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="451" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E313236" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50710" e_stop="51097"/>
          <exon e_start="52040" e_stop="52102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTT</genome_strand>
        <mrna_strand>CACATTCAGGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTGAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACACTGTGGAGGTTGTAATTGCTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295347" ref_strand="+" ref_description="SGN-E295347 [cLET-20-P22]">
      <seq>ggaaaccaaatcggttccaaattctgggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50431" stop="52519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50731" g_stop="51097" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52219" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="547" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E295347" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50731" e_stop="51097"/>
          <exon e_start="52040" e_stop="52219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAAT</genome_strand>
        <mrna_strand>GGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270458" ref_strand="+" ref_description="SGN-E270458 [cLEM-1-P17]">
      <seq>caaatcggttccaaattctgggaagttatctgtgatgaacacggagttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttaaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtacgatggatatgtatcagatctggtccctatggacagatcttccgtcctgataacttcgtctttggacagtctggtgctggtcataactgggccaaaggtcattatactgaaggcgctgagtggattgatgctggtctacatgttgatcgcaaagaagcggagaatagcgattgcttgcaaggattccaggatcgccactcacttggtggagggactggatctggcatgggaacactactgatgtgcaaggttagggaggagtatccagacaggatgatgctcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50437" stop="52443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50737" g_stop="51097" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52143" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="466" r_length="104" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E270458" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50737" e_stop="51097"/>
          <exon e_start="52040" e_stop="52143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATA-GTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACA</genome_strand>
        <mrna_strand>CAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGAGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTAAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATATGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTCGTCTTTGGACAGTCTGGTGCTGGTCATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTGGATTGATGCTGGTCTACATGTTGATCGCAAAGAAGCGGAGAATAGCGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGATCGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATGTGCAAGGTTAGGGAGGAGTATCCAGACAGGATGATGCTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703591" ref_strand="+" ref_description="SGN-E703591 [FA21DG01]">
      <seq>gggaagttatctgtgatgaacacggtgttgatcctaccggacgttacaaaggaaccgccgctgagtccgatcttcagcttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggcggttttgatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcaactgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagtgccagagcttactcaacaaatgtgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50456" stop="52917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50756" g_stop="51097" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="612" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52617" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="833" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E703591" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50756" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGAT</genome_strand>
        <mrna_strand>GGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAACTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484593" ref_strand="+" ref_description="SGN-E484593 [cSTE-13-P6]">
      <seq>acaaaggaaccgccgctgagtccgatcttcaacttgaacgtatcaatgtttatttcaatgaagcttctggtggacgttatgttcctagggctgtgcttatggatctagagcctggtactatggatagtatcagatctggtccctatggacagatcttccgtcctgataactttgtgtttggacagtctggtgctgggaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtccgtgcaccaattggtggaaaatgctgatgaatgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50501" stop="52545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50801" g_stop="51097" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52245" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="503" r_length="206" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E484593" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50801" e_stop="51097"/>
          <exon e_start="52040" e_stop="52245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATG</genome_strand>
        <mrna_strand>ACAAAGGAACCGCCGCTGAGTCCGATCTTCAACTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCTGTGCTTATGGATCTAGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGGAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCCGTGCACCAATTGGTGGAAAATGCTGATGAATGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698843" ref_strand="+" ref_description="SGN-E698843 [FA07DB01]">
      <seq>tggtccctatggacagatcttccgtcctgataactttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcaactgaactcacacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgcccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50637" stop="52848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50937" g_stop="51097" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="431" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52548" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="583" r_length="152" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E698843" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50937" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCA</genome_strand>
        <mrna_strand>TGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAACTGAACTCACACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557979" ref_strand="+" ref_description="SGN-E557979 [16863]">
      <seq>gacagatcttccgtcctgataactttgtgtttggacagtctggtgctggaaataactgggcgaaaggtcattatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtggagaatgctgatgaatgtatggtccttggacaacgaagctctatatgatatttgtttcaggactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctgggtcagctgaactcagacctgaggaaattggctgtgaatttaatccccttcccacgtcttcacttcttcatggtgggatttggccactaactctcgtggatcacagcaatacatatctctaacagtgccagagcttactcaacaaatgtgggatgccagaacatgatgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50648" stop="52935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50948" g_stop="51097" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="421" r_length="271" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.98"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52635" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="658" r_length="237" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E557979" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50948" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTT-GACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCT-GGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGC</genome_strand>
        <mrna_strand>GACAGATCTTCCGTCCTGATAACTTTGTGTTTGGACAGTCTGGTGCTGGAAATAACTGGGCGAAAGGTCATTATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGGTCCTTGGACAACGAAGCTCTATATGATATTTGTTTCAGGACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATCCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTG-GCCACTAA-CTCTCGTGGATCACAGCAATACATATCTCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCC-AGAACATGATGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247424" ref_strand="+" ref_description="SGN-E247424 [cLEF-46-L6]">
      <seq>tttgtctttggacagtctggtgctggtaataactgggccaaaggtcattatactgaaggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50671" stop="52775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50971" g_stop="51097" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="397" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52475" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="476" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E247424" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50971" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTC</genome_strand>
        <mrna_strand>TTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405592" ref_strand="+" ref_description="SGN-E405592 [PPI-1-C23]">
      <seq>ctggtgctggaaataactgggcgaaaggtcatatactgaaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtggagaatgctgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcaggactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaatccccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatctctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgccgcagatccccgtcatggacgttacctgacagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50687" stop="52971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50987" g_stop="51097" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="380" r_length="270" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.98"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52671" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="655" r_length="275" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E405592" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50987" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCT</genome_strand>
        <mrna_strand>CTGGTGCTGGAAATAACTGGGCGAAAGGTCA-TATACTGAAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGGACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATCCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCTCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCCGCAGATCCCCGTCATGGACGTTACCTGACAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465987" ref_strand="+" ref_description="SGN-E465987 [cPRO-22-J6]">
      <seq>aaggcgctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtggagaatgctgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcaggactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggccagctgaactcagacctgaggaaattggctgtgaatttaatccccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatccctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgccgcagatccacgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatncatgtgcagaaacagaactcatcctactttgttgaatggatccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50726" stop="53070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51026" g_stop="51097" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="342" r_length="270" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.98"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52770" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="716" r_length="374" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E465987" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51026" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCT</genome_strand>
        <mrna_strand>AAGGCGCTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGGACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGCCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATCCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCCCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCCGCAGATCCACGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATNCATGTGCAGAAACAGAACTCATCCTACTTTGTTGAATGGATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702081" ref_strand="+" ref_description="SGN-E702081 [FA17DA05]">
      <seq>ggcgctgagttgattgatgctgttctagatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcaactgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcgtcctactttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacgtttgttggcaattcaacctccattcangagatgtttagaagggtgagtgagcagtttactgccatgttcangcgcaaggctttcttgcattggtacacaggtgaangaatggatgaaatggagttcactgaagccgagagcaacatgaatgatttggttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50728" stop="53291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51028" g_stop="51097" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="340" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52991" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="935" r_length="595" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E702081" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>935</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51028" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGC</genome_strand>
        <mrna_strand>GGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAACTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGCAATTCAACCTCCATTCANGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCANGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAANGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698631" ref_strand="+" ref_description="SGN-E698631 [FA07AD06]">
      <seq>cacgctgagttgattgatgctgttctagatgttgttcgtaaaccaagcggagaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcaactgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttacgggtaagatgagcacaaaggaggtagatgaacagatgatccatgtgcagaacaagaactcgtcctactttgttgaatggatccctaacaatgccaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50730" stop="53083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51028" g_stop="51097" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="341" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52783" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="728" r_length="387" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E698631" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51028" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAA-GAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGT</genome_strand>
        <mrna_strand>CACGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAACCAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAACTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTACGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCCATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGCCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464163" ref_strand="+" ref_description="SGN-E464163 [cPRO-17-M11]">
      <seq>ctgagttgatcgatgctgttctcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtggagaatgctgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcaggactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggccagctgaactcagacctgaggaaattggctgtgaatttaatccccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50732" stop="52871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51032" g_stop="51097" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="336" r_length="270" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.98"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52571" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="511" r_length="175" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E464163" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51032" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCA</genome_strand>
        <mrna_strand>CTGAGTTGATCGATGCTGTTCTCGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGGACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGCCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATCCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602096" ref_strand="+" ref_description="SGN-E602096 [55150]">
      <seq>gcacgaggtcgatgttgttcgtaaagaagcggagaattgtgattgcttgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtggagaatgctgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcaggactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggccagctgaactcagacctgaggaaattggctgtgaatttaatccccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatccctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgccgcagatccacgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50753" stop="52997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51056" g_stop="51097" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="53" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="323" r_length="270" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.98"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52697" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="624" r_length="301" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E602096" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E602096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51056" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAG</genome_strand>
        <mrna_strand>ATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGGACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGCCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATCCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCCCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCCGCAGATCCACGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268367" ref_strand="+" ref_description="SGN-E268367 [cLEI-13-A18]">
      <seq>ttgttcgtaaagaagcggagaattgtgattgcttgcggggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50759" stop="52775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51059" g_stop="51097" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="309" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52475" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="388" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E268367" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51059" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTC</genome_strand>
        <mrna_strand>TTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698494" ref_strand="+" ref_description="SGN-E698494 [FA06CB07]">
      <seq>agaattgtgattgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcaactgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcgtcctactttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="50777" stop="53103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51077" g_stop="51097" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942">
            <donor d_prob="0.853" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="291" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52803" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="698" r_length="407" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E698494" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51077" e_stop="51097"/>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTGTGATTGCTTGCAAGGTTTTGTTCATTTCCTCTATGAATGTGCCTGTTGCCTTTAGTTTCTGTTTTCGTTTTTATTGCGGATTGCTTGCTTATTCTTCCGATTGGTAGTTCACACTGCATATATTAGATCTCTTTCTTATTGTCATTCCAAAATCCTATGCTAATTTGCCCGATGTATGAGTTCATAGTTGACAGTGCCTTTAGTTTCTGTTTTCGATTTTATTGCTAATTGCGTACTGATTCTTCCTATTGGTAGTTAACAAGTGCCAATACTAGATCTCTTCCTCATTTTCATTTCAAATCCTATGCTAATTGGTCCGATGTATGTGCTTATAGTCGATATAACCTAGATGTAACCGAATTTGATCTTGTTTTATTTTGTTTAATGCTTGTTTGTTGTTTCTATGAATGTACCTATGGTAGCACAGTTGGTCATATACAGGTCTCTTTTACTCATTCGTAATCGTATGCTCTATGATGAAAATGCCTATATTTGCTGTTAACAACTTGTCTGACTCAGGGTAGAAATAATGCTGATGCATATGTGCACATTTGAATGTTCATATAAAGCCTGAATCTCATAGAGCACACACATGAGTGGCATAAAATTGTATAGTCTAGCAGAAGGATAAATTTAACTTTCTCATCATGCATCTCACAAGAATTCATACTCTCTTAGAGTGCATGATCGAGTACTGAGATTTATGATGTGTCTGGATCTTACTTATGGTAATACTAGTCAATCGTCGTGTGTTTCTTTTCCTTATACTCTTGGAAATTTATCTAAGATCTTATTTATATTGTTTCTGTCTTGAAATTTCTGGACAGTGATATTATCTAATTGAATACTTTTATGTCTAATGCATCTATTTGTGACCCTCTTTATACACAATTATTACCATTTGTTGATTGAGGGGTGGTAGTTGATTGTTTTGTATTCTTTGTTTTATGGATCAGGATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCA</genome_strand>
        <mrna_strand>AGAATTGTGATTGCTTGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAACTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572886" ref_strand="+" ref_description="SGN-E572886 [32109]">
      <seq>cctcgtgccgtgcaaggattccaggtttgtcactcacttggtggagggactggatctggcatgggaacactactgatttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacattgtctgtgcaccaattggtggagaatgctgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcaggactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaatccccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatctctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgccgcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaaggaactcatcctattttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaatgggctgaagatgggcatccacatttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="51738" stop="53136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52040" g_stop="52107" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="84" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52108" i_stop="52159" i_length="52">
            <donor d_prob="0.401" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52160" g_stop="52309" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="234" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.98"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52397" g_stop="52836" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="675" r_length="441" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E572886" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52040" e_stop="52107"/>
          <exon e_start="52160" e_stop="52309"/>
          <exon e_start="52397" e_stop="52836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAA-GAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGAT-GGCATCCACGTTTGTT</genome_strand>
        <mrna_strand>GATTCCAGGTTTGTCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCCTT....................................................CTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGGACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATCCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCTCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCCGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGGAACTCATCCTATTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAA-TGGGCTGAAGATGGGCATCCACATTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267115" ref_strand="+" ref_description="SGN-E267115 [cLEI-4-P13]">
      <seq>gattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="51740" stop="52879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52397" g_stop="52579" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="453" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E267115" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATAT</genome_strand>
        <mrna_strand>GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367799" ref_strand="+" ref_description="SGN-E367799 [cLPT-14-J8]">
      <seq>ttgcttgcaaggattccaggtttgccactcacttggtggagggactggatctggcatgggaacactactgatttccaaggtaagggaagagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="51732" stop="52719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52040" g_stop="52309" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="281" r_length="270" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52397" g_stop="52419" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="304" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E367799" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52040" e_stop="52309"/>
          <exon e_start="52397" e_stop="52419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATC</genome_strand>
        <mrna_strand>GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAAGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244475" ref_strand="+" ref_description="SGN-E244475 [cLEF-3-L3]">
      <seq>ggaattcggcacgaggatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="51798" stop="52993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52081" g_stop="52309" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52397" g_stop="52693" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="524" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E244475" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52081" e_stop="52309"/>
          <exon e_start="52397" e_stop="52693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGA</genome_strand>
        <mrna_strand>GGAATTCG-GCACGA-GGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728556" ref_strand="+" ref_description="SGN-E728556 [LA18AG12]">
      <seq>gcaatactactgatttccaaggtaagggaggagtatccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcaactgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcgtcctactttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacgtttgttggcaattcaacctccattcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttcactgaagccgagagcaacatgaatgatttggttgcagaatatcaacaataccaggatgctaccgcagatgatgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="51787" stop="53333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52087" g_stop="52309" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52397" g_stop="53033" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="860" r_length="637" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E728556" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52087" e_stop="52309"/>
          <exon e_start="52397" e_stop="53033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGA</genome_strand>
        <mrna_strand>GCAATACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAACTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGCAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACCGCAGATGATGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262849" ref_strand="+" ref_description="SGN-E262849 [cLEG-59-O7]">
      <seq>tccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcgtcctactttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacgtttgttggaaattcaacctccattcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaagaatggatgaaatggagttcactgaagcccgagagcacatgaatgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="51822" stop="53285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52122" g_stop="52309" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52397" g_stop="52985" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="777" r_length="589" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E262849" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52122" e_stop="52309"/>
          <exon e_start="52397" e_stop="52985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAG-CCGAGAGCAACATGAATGATTT</genome_strand>
        <mrna_strand>TCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAAGAATGGATGAAATGGAGTTCACTGAAGCCCGAGAGC-ACATGAATGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311932" ref_strand="+" ref_description="SGN-E311932 [cTOA-16-A13]">
      <seq>tccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacctatcgctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="51822" stop="53006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52122" g_stop="52309" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52397" g_stop="52706" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="498" r_length="310" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E311932" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52122" e_stop="52309"/>
          <exon e_start="52397" e_stop="52706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGA</genome_strand>
        <mrna_strand>TCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACCTATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266858" ref_strand="+" ref_description="SGN-E266858 [cLEI-7-J14]">
      <seq>ccagacaggatgatgctcacattctctgttttcccttctccaaaggtgtctgacactgttgtagaaccatacaatgctacactgtcggtgcaccaattggtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcgtcctactttgttgaatggatccctaacaatgtcaagtctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="51823" stop="53087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52123" g_stop="52309" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52397" g_stop="52787" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="578" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E266858" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52123" e_stop="52309"/>
          <exon e_start="52397" e_stop="52787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAG</genome_strand>
        <mrna_strand>CCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560164" ref_strand="+" ref_description="SGN-E560164 [19774]">
      <seq>gaaccatacaatgctacattgtctgtgcaccaattggtggagaatgctgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcaggactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaatccccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatctctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgccgcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcatcctattttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacatttgttggcaattcaacctccattcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttcactgaagccgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="51886" stop="53268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52186" g_stop="52309" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.98"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52397" g_stop="52968" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="696" r_length="572" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E560164" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52186" e_stop="52309"/>
          <exon e_start="52397" e_stop="52968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAG</genome_strand>
        <mrna_strand>GAACCATACAATGCTACATTGTCTGTGCACCAATTGGTGGAGAATGCTGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGGACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATCCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCTCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCCGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCATCCTATTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACATTTGTTGGCAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357963" ref_strand="+" ref_description="SGN-E357963 [cLHT-32-E11]">
      <seq>gaaccatacaatgctacactgtcggtgcaccaattagtggagaatgccgatgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacatgttgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgcccctctaacctctcgtggatcacagcaatacatatcgctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggacgtagatgaacagatgatcaatgtgcagaacaagaactcgtcctactttgttgaatggatccccaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacgtttgttggcaattcaacctccattcacgagatgtttacaagggtgagtgagcagtttactgccatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="51886" stop="53197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52186" g_stop="52309" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52397" g_stop="52897" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="625" r_length="501" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E357963" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52186" e_stop="52309"/>
          <exon e_start="52397" e_stop="52897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGT</genome_strand>
        <mrna_strand>GAACCATACAATGCTACACTGTCGGTGCACCAATTAGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACATGTTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCTCTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGACGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCCAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGCAATTCAACCTCCATTCACGAGATGTTTACAAGGGTGAGTGAGCAGTTTACTGCCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705148" ref_strand="+" ref_description="SGN-E705148 [FA26BC03]">
      <seq>cgattaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcaactgaactcagacctgaggaaatttggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcgtcctactttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacgtttgttggcaattcaacctccattcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttcactgaagccgagagcaacatgaatgatttggttgcagaatatcaacaataccaggatgctacagcagatgatgaggaagagtatgatgatgatgaggttgctgatgatcaataccaatcctaaaaacttctctacatttgatatattgttggtttgttcaatttctgccaagtgaacttgntatgtttcctattgtctttctctcatttgaactgtgtttgggttgttgagaaatgaaatgtcttttattggtctatatgaatatactgtataacagtagctttctgtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="51933" stop="53547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52233" g_stop="52309" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52397" g_stop="53244" g_length="848"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="924" r_length="847" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="927" polyA_stop="947"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E705148" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>925</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52233" e_stop="52309"/>
          <exon e_start="52397" e_stop="53244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAA-TTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTC-TTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTATATGAATATACTGTATTACAGTAGCTTCTT</genome_strand>
        <mrna_strand>CGATTAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAACTGAACTCAGACCTGAGGAAATTTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGCAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGNTATGTTTCCTATTGTCTTTCTC-TCATTTGAAC--TGTGTTTGGGTTGTTGAGAAATGAAATGTCTTTTATTGGTCTATATGAATATACTGTATAACAGTAGCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363472" ref_strand="+" ref_description="SGN-E363472 [cLPP-4-D5]">
      <seq>atgaatgtatggtccttgacaacgaagctctatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcgtcctactttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="51935" stop="53098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52235" g_stop="52309" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52397" g_stop="52798" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="477" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E363472" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52235" e_stop="52309"/>
          <exon e_start="52397" e_stop="52798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATA</genome_strand>
        <mrna_strand>ATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561533" ref_strand="+" ref_description="SGN-E561533 [16584]">
      <seq>ttgacaacgaagctctatatgatatttgtttcaggactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaatccccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatctctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgccgcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcatcctattttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacatttgttggcaattcaacctccattcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttcactgaagccgagagcaacatgaatgatttggttgcagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="51950" stop="53295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52250" g_stop="52309" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.98"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52397" g_stop="52995" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="659" r_length="599" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E561533" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52250" e_stop="52309"/>
          <exon e_start="52397" e_stop="52995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAA</genome_strand>
        <mrna_strand>TTGACAACGAAGCTCTATATGATATTTGTTTCAGGACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATCCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCTCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCCGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCATCCTATTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACATTTGTTGGCAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448219" ref_strand="+" ref_description="SGN-E448219 [cSTS-2-G10]">
      <seq>cgaagctctatatgatatttgtttcaggactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaatccccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatctctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgccgcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcatcctattttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacatttgttggcaattcaacctccattcangagatgtttagaagggtgagtgagcagtttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="51957" stop="53190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52257" g_stop="52309" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.98"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52397" g_stop="52890" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="547" r_length="494" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E448219" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52257" e_stop="52309"/>
          <exon e_start="52397" e_stop="52890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACT</genome_strand>
        <mrna_strand>CGAAGCTCTATATGATATTTGTTTCAGGACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATCCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCTCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCCGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCATCCTATTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACATTTGTTGGCAATTCAACCTCCATTCANGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290955" ref_strand="+" ref_description="SGN-E290955 [cLET-8-G22]">
      <seq>cgaagctgtatatgatatttgtttcagaactttgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="51957" stop="53026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52257" g_stop="52309" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.98"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52397" g_stop="52726" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="383" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E290955" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52257" e_stop="52309"/>
          <exon e_start="52397" e_stop="52726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCA</genome_strand>
        <mrna_strand>CGAAGCTGTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261442" ref_strand="+" ref_description="SGN-E261442 [cLEG-57-D20]">
      <seq>tgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcgtcctactttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacgtttgttggaaattcaacctccattcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttcactgaagccgagagcaacatgaatgatttggttgcagaatatcaacaataccaggatgctacagcagatgatgaggaagagtatgatgatgatgaggttgctgatgatcaataccaatcctaaaaacttctctacatttgatatatttgttggtttgttcaatttctgccaagtgaacttgttatgtttcctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="51989" stop="53450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52289" g_stop="52309" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52397" g_stop="53150" g_length="754"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="776" r_length="755" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E261442" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52289" e_stop="52309"/>
          <exon e_start="52397" e_stop="53150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATA-TTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATT</genome_strand>
        <mrna_strand>TGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256555" ref_strand="+" ref_description="SGN-E256555 [cLEG-38-E18]">
      <seq>tgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcgtcctactttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacgtttgttggaaattcaacctccattcaggagatgtttagaagggtgagtgagcagtttactgccatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="51989" stop="53198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52289" g_stop="52309" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52397" g_stop="52898" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="523" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E256555" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52289" e_stop="52309"/>
          <exon e_start="52397" e_stop="52898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTT</genome_strand>
        <mrna_strand>TGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257055" ref_strand="+" ref_description="SGN-E257055 [cLEG-44-O22]">
      <seq>tgaagctcactactccaagttttggtgacttgaaccatcagatctctgcaaccatgagtggtgttactcgctgtttgagattccctgatcagctgaactcagacctcaagaaattggctgtgaatataattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagcgccggagcttactcaacaaatgtgggatgccaagaacatgatgcgcgcggcagatccccgtcatggacgctacctgacagcttctgccatgtttatgggttagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcgtcctactttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="51989" stop="53124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52289" g_stop="52309" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.00"/>
            <acceptor a_prob="0.861" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52397" g_stop="52824" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="449" r_length="428" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E257055" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52289" e_stop="52309"/>
          <exon e_start="52397" e_stop="52824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCA</genome_strand>
        <mrna_strand>TGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATCAGATCTCTGCAACCATGAGTGGTGTTACTCGCTGTTTGAGATTCCCTGATCAGCTGAACTCAGACCTCAAGAAATTGGCTGTGAATATAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGCGCCGGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGCGCGCGGCAGATCCCCGTCATGGACGCTACCTGACAGCTTCTGCCATGTTTATGGGTTAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257899" ref_strand="+" ref_description="SGN-E257899 [cLEG-39-J16]">
      <seq>tgaagctcactactccaagttttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcgtcctactttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="51989" stop="53098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52289" g_stop="52309" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87">
            <donor d_prob="0.478" d_score="0.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52397" g_stop="52798" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="423" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E257899" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52289" e_stop="52309"/>
          <exon e_start="52397" e_stop="52798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCTCACTACTCCAAGTTGTAAGTGTTTCTCTTTAGTGGTAACCAATAATATGATCTGCAAGTTTAAGTAAGCAAATGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATA</genome_strand>
        <mrna_strand>TGAAGCTCACTACTCCAAGTT.......................................................................................TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404736" ref_strand="+" ref_description="SGN-E404736 [PPC-15-I5]">
      <seq>agtttttttttgcctattttctcttgtagttggtgacttgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggccagctgaactcagacctgaggaaactggctgtgaatttaatccccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatccctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgccgcagatccacgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcatcctactttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacatttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="52069" stop="53137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52368" g_stop="52837" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E404736" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52368" e_stop="52837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTG</genome_strand>
        <mrna_strand>AGTTTTTTTTTGCCTATTTTCTCTTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGCCAGCTGAACTCAGACCTGAGGAAACTGGCTGTGAATTTAATCCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCCCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCCGCAGATCCACGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCATCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACATTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457820" ref_strand="+" ref_description="SGN-E457820 [cPRO-3-H4]">
      <seq>tccacctgaaccatttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggccagctgaactcagacctgaggaaattggctgtgaatttaatccccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatccctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgccgcagatccacgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcatcctactttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacatttgttggcaattcaacctccattcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttcactgaagccgagagcaacatgaatgatttggttgcagaatatcaacaataccangatgctacagcagatgatgaggaagagtatgatgatgaggccgctgatgatcatcaatatgaatcctaaagacttgtctacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="52103" stop="53396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52400" g_stop="53096" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E457820" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52400" e_stop="53096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTG</genome_strand>
        <mrna_strand>TCCACCTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGCCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATCCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCCCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCCGCAGATCCACGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCATCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACATTTGTTGGCAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCANGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGAGGCCGCTGATGATCATCAATATGAATCCTAAAGACTTGTCTACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690116" ref_strand="+" ref_description="SGN-E690116 [LH_Ea02K18]">
      <seq>tgatttgatctctgcaaccatgagtggtgttactatgctgcttgagattccctggtcagctgaactcggacctgaggaaattggctgtgaatttaattcccttcccacgttcttcacttcttcatggagggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagtgccaaagcttactcaacaaatgtgggatgccaagaacatgatgcgtgcggcagatccccgtcatggacgttacctgacagcttctgccatggttaggggtactatgaccacaaaggaggtagatgaacagatgatcaatgtgcaaaacaagaactcgacctactttgttgaatggatccctaacaatgccaagtctagcgcgtgtgatatcccaccaactgggctgaagatggcatccacgtgtgttggcaattcaacctctattcaggacatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattgggacacaggtgaaggaatggatgaaatggagttcactgaagccgacagcaacatgaatgatttggttgcataatatcaacaataccaggatgctacagcatatgatgaggaagaatatgatgatgatgaggttgctgatgatcaataccaatcctagaaacttctctacattagatatattgacggcctgttcaatttctgccgagtgaacttgacatgttacctattgacttctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="52112" stop="53461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52410" g_stop="53161" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="754" r_length="754" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E690116" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52410" e_stop="53161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTGATCTCTGCAACCATGAGTGGTGTTACT-TGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACG-TCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTC</genome_strand>
        <mrna_strand>TGATTTGATCTCTGCAACCATGAGTGGTGTTACTATGCTGCTTGAGATTCCCTGGTCAGCTGAACTCGGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTTCTTCACTTCTTCATGGAGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAAAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGCGTGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGGTTAGGGGTACTATGACCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAAAACAAGAACTCGACCTACTTTGTTGAATGGATCCCTAACAATGCCAAGTCTAGCGCGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTGTGTTGGCAATTCAACCTCTATTCAGGACATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGGACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGACAGCAACATGAATGATTTGGTTGCATAATATCAACAATACCAGGATGCTACAGCATATGATGAGGAAGAATATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAGAAACTTCTCTACATTAGATATATTGACGGCCTGTTCAATTTCTGCCGAGTGAACTTGACATGTTACCTATTGACTTCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693956" ref_strand="+" ref_description="SGN-E693956 [LH_Ea02K18](-)">
      <seq>atttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgtgcggcagatccccgtcatggacgttacctgacagcttttgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcaaaacaagaactcgtcctactttgttgaatggatccctaacaatgtcaagtttagtgtgtgtgatatcccaccaactgggctgaagatggcatccacgtttgttggcaattcaacctctattcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttcactgaagccgagagcaacatgaatgatttggttgcagaatatcaacaataccaggatgctacagcagatgatgaggaagagtatgatgatgatgaggttgctgatgatcaataccaatcctagaaacttctctacatttgatatattgttggtttgttcaatttctgccaagtgaacttgttatgtttccaaaggtcttctcttcatttgaactttgtntttggtttcttaaaaggggaaatgtcttttattggtctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="52112" stop="53524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52412" g_stop="53213" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="802" r_length="802" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="803" polyA_stop="824"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E693956" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52412" e_stop="53213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCT</genome_strand>
        <mrna_strand>ATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGTGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTTTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAAAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTTTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGCAATTCAACCTCTATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAGAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCAAAGGTCTTCTCTTCATTTGAACTTTGTNTTTGGTTTCTTAAAAGGGGAAATGTCTTTTATTGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311159" ref_strand="+" ref_description="SGN-E311159 [cLEZ-16-F22]">
      <seq>atttgatctctgcaaccatgagtggtgttacttgctgtttgagattccctggtcagctgaactcagacctgaggaaattggctgtgaatttaattcccttcccacgtcttcacttcttcatggtgggatttgccccactaacctctcgtggatcacagcaatacatatcgctaacagtgccagagcttactcaacaaatgtgggatgccaagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcgtcctactttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacgtttgttggaaattcaacctccattcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="52112" stop="53222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52412" g_stop="52922" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E311159" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52412" e_stop="52922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTG</genome_strand>
        <mrna_strand>ATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590709" ref_strand="+" ref_description="SGN-E590709 [44311]">
      <seq>ttttagaccaataaaagacatttcatttctcaacaaaccaaacacaaagttcaaatgaagagaagacaataggaaacataacaagttcactttggcagaaattgaacaaaccaacaaatatcaaatgtagacaagtctttaggattcatattcatgatcatcagcggcctcatcatcatactcttcctcatcatctgctgtagcatcctggtattgttgatattctgcaaccaaatcattcatgttgctctcggcttcagtgaactccatttcatccattccttcacctgtgtaccaatgcaagaaagccttgcgcctgaacatggcagtaaactgctcactcacccttctaaacatctcctgaatggaggttgaattgccaacaaatgtggatgccatcttcagcccagttggtgggatatcacacacactagacttgacattgttagggatccattcaacaaaataggatgagttcttgttctgcacattgatcatctgttcatctacctcctttgtgctcatcttacccctaaacatggcagaagctgtcaggtaacgtccatgacggggatctgcggcgcacatcatgttcttggcatcccacatttgttgagtaagctctggcactgttagagatatgtattgctgtgatccacgagaggttagtggggcaaatcccaccatgaagaagtgaagcacgtgggaacggggattaaattcccagccaatttcctcaggtctgagttcagctgaccagcggaatctcaaacagcaagtaacaccactcatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="53516" stop="52126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53217" g_stop="52426" g_length="792"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="795" r_length="795" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E590709" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53217" e_stop="52426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAGACCAATAAAAGACATTTCATTTCTCAACAAACCAAACACAAAGTTCAAATGAAGAGAAGACAATAGGAAACATAACAAGTTCAC-TTGGCAGAAATTGAACAAACCAACAATATATCAAATGTAGAGAAGTTTTTAGGATTGGTATTGATCATCAGCAACCTCATCATCATCATACTCTTCCTCATCATCTGCTGTAGCATCCTGGTATTGTTGATATTCTGCAACCAAATCATTCATGTTGCTCTCGGCTTCAGTGAACTCCATTTCATCCATTCCTTCACCTGTGTACCAATGCAAGAAAGCCTTGCGCCTGAACATGGCAGTAAACTGCTCACTCACCCTTCTAAACATCTCCTGAATGGAGGTTGAATTTCCAACAAACGTGGATGCCATCTTCAGCCCAGTTGGTGGGATATCACACACACTAGACTTGACATTGTTAGGGATCCATTCAACAAAGTAGGACGAGTTCTTGTTCTGCACATTGATCATCTGTTCATCTACCTCCTTTGTGCTCATCTTACCCCTAAACATGGCAGAAGCTGTCAGGTAACGTCCATGACGGGGATCTGCCGCGCACATCATGTTCTTGGCATCCCACATTTGTTGAGTAAGCTCTGGCACTGTTAGCGATATGTATTGCTGTGATCCACGAGAGGTTAGTGGGGCAAATCCCACCATGAAGAAGTGAAG-ACGTGGGAA-GGGAATTAAATTCACAGCCAATTTCCTCAGGTCTGAGTTCAGCTGACCAG-GGAATCTCAAACAGCAAGTAACACCACTCATGGT</genome_strand>
        <mrna_strand>TTTTAGACCAATAAAAGACATTTCATTTCTCAACAAACCAAACACAAAGTTCAAATGAAGAGAAGACAATAGGAAACATAACAAGTTCACTTTGGCAGAAATTGAACAAACCAACAA-ATATCAAATGTAGACAAGTCTTTAGGATTCATATTCATGATCATCAGCGGCCTCATCATCATACTCTTCCTCATCATCTGCTGTAGCATCCTGGTATTGTTGATATTCTGCAACCAAATCATTCATGTTGCTCTCGGCTTCAGTGAACTCCATTTCATCCATTCCTTCACCTGTGTACCAATGCAAGAAAGCCTTGCGCCTGAACATGGCAGTAAACTGCTCACTCACCCTTCTAAACATCTCCTGAATGGAGGTTGAATTGCCAACAAATGTGGATGCCATCTTCAGCCCAGTTGGTGGGATATCACACACACTAGACTTGACATTGTTAGGGATCCATTCAACAAAATAGGATGAGTTCTTGTTCTGCACATTGATCATCTGTTCATCTACCTCCTTTGTGCTCATCTTACCCCTAAACATGGCAGAAGCTGTCAGGTAACGTCCATGACGGGGATCTGCGGCGCACATCATGTTCTTGGCATCCCACATTTGTTGAGTAAGCTCTGGCACTGTTAGAGATATGTATTGCTGTGATCCACGAGAGGTTAGTGGGGCAAATCCCACCATGAAGAAGTGAAGCACGTGGGAACGGGGATTAAATTCCCAGCCAATTTCCTCAGGTCTGAGTTCAGCTGACCAGCGGAATCTCAAACAGCAAGTAACACCACTCATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558568" ref_strand="+" ref_description="SGN-E558568 [17928]">
      <seq>catttcatttctcaacaaaccaaacacaaagttcaaatgaagagaagacaataggaaacataacaagttcactttggcagaaattgaagcaaaccaacaaatatcaaatgtagacaagtctttaggattcatattcatgatcatcagcggcctcatcatcatactcttcctcatcatctgctgtagcatcctggtattgttgatattctgcaaccaaatcattcatgttgctctcggcttcagtgaactccatttcatccattccttcacctgtgtaccaatgcaagaaagccttgcgcctgaacatggcagtaaactgctcactcacccttctaaacatctcctggaatggaggttgaattgccaacaaatgtggatgccatcttcagcccagttggtgggatatcacacacactagacttgacattgttagggatccattcaacaaaataggatgagttcttgttctgcacattgatcatctgttcatctacctcctttgtgctcatcttacccctaaacatggcagaagctgtcaggtaacgtccatgacggggatctgcggcgcacatcatgttcttggcatcccacatttgttgagtaagctctgggcactgttagagatatgtattgctgtgatccacgagaaggttagtgggggcaaatcccaccatgaagaagtgaagacgttgggaaggggattaaattcacagcaatttcctcaggtctggagttcagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="53499" stop="52164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53199" g_stop="52464" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E558568" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53199" e_stop="52464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCATTTCTCAACAAACCAAACACAAAGTTCAAATGAAGAGAAGACAATAGGAAACATAACAAGTTCACT-TGGCAGAAATTGAA-CAAACCAACAATATATCAAATGTAGAGAAGTTTTTAGGATTGGTATTGATCATCAGCAACCTCATCATCATCATACTCTTCCTCATCATCTGCTGTAGCATCCTGGTATTGTTGATATTCTGCAACCAAATCATTCATGTTGCTCTCGGCTTCAGTGAACTCCATTTCATCCATTCCTTCACCTGTGTACCAATGCAAGAAAGCCTTGCGCCTGAACATGGCAGTAAACTGCTCACTCACCCTTCTAAACATCTCCT-GAATGGAGGTTGAATTTCCAACAAACGTGGATGCCATCTTCAGCCCAGTTGGTGGGATATCACACACACTAGACTTGACATTGTTAGGGATCCATTCAACAAAGTAGGACGAGTTCTTGTTCTGCACATTGATCATCTGTTCATCTACCTCCTTTGTGCTCATCTTACCCCTAAACATGGCAGAAGCTGTCAGGTAACGTCCATGACGGGGATCTGCCGCGCACATCATGTTCTTGGCATCCCACATTTGTTGAGTAAGCTCT-GGCACTGTTAGCGATATGTATTGCTGTGATCCACGAG-AGGTTAGT-GGGGCAAATCCCACCATGAAGAAGTGAAGACG-TGGGAAGGGAATTAAATTCACAGCCAATTTCCTCAGGTCT-GAGTTCAGCTGA</genome_strand>
        <mrna_strand>CATTTCATTTCTCAACAAACCAAACACAAAGTTCAAATGAAGAGAAGACAATAGGAAACATAACAAGTTCACTTTGGCAGAAATTGAAGCAAACCAACAA-ATATCAAATGTAGACAAGTCTTTAGGATTCATATTCATGATCATCAGCGGCCTCATCATCATACTCTTCCTCATCATCTGCTGTAGCATCCTGGTATTGTTGATATTCTGCAACCAAATCATTCATGTTGCTCTCGGCTTCAGTGAACTCCATTTCATCCATTCCTTCACCTGTGTACCAATGCAAGAAAGCCTTGCGCCTGAACATGGCAGTAAACTGCTCACTCACCCTTCTAAACATCTCCTGGAATGGAGGTTGAATTGCCAACAAATGTGGATGCCATCTTCAGCCCAGTTGGTGGGATATCACACACACTAGACTTGACATTGTTAGGGATCCATTCAACAAAATAGGATGAGTTCTTGTTCTGCACATTGATCATCTGTTCATCTACCTCCTTTGTGCTCATCTTACCCCTAAACATGGCAGAAGCTGTCAGGTAACGTCCATGACGGGGATCTGCGGCGCACATCATGTTCTTGGCATCCCACATTTGTTGAGTAAGCTCTGGGCACTGTTAGAGATATGTATTGCTGTGATCCACGAGAAGGTTAGTGGGGGCAAATCCCACCATGAAGAAGTGAAGACGTTGGGAAGGGGATTAAATTCACAG-CAATTTCCTCAGGTCTGGAGTTCAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578190" ref_strand="+" ref_description="SGN-E578190 [LE12AD04]">
      <seq>tttttttttagaccaataaaagacatttcatttctcaacaaaccaaacacagttcaaatgaagagaagacaataggaaacataacaagttcacttggcagaaattgaacaaaccaacaatatatcaaatgtagagaagtttttaggattggtattgatcatcagcaacctcatcatcatcatactcttcctcatcatctgctgtagcatcctggtattgttgatattctgcaaccaaatcattcatgttgctctcggcttcagtgaactccatttcatccattccttcacctgtgtaccaatgcaagaaagccttgcgcctgaacatggcagtaaactgctcactcacccttctaaacatctcctgaatggaggttgaattgccaacaaacgtggatgccatcttcagcccagttggtgggatatcacacacactagacttgacattgttagggatccattcaacaaagtaggacgagttcttgttctgcacattgatcatctgttcatctacctcctttgtgctcatcttacccctaaacatggcagaagctgtcaggtaacgtccatgacggggatctgccgcgcacatcatgttcttggcatcccacatttgttgagtaagctctggcactgttagcgatatgtattgctgagatccacgagaggttagtggggcatatcccaccatgaagaagtgaagacgtgggaagggaattaaattcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="53522" stop="52194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53222" g_stop="52494" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E578190" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53222" e_stop="52494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCATATAGACCAATAAAAGACATTTCATTTCTCAACAAACCAAACACAAAGTTCAAATGAAGAGAAGACAATAGGAAACATAACAAGTTCACTTGGCAGAAATTGAACAAACCAACAATATATCAAATGTAGAGAAGTTTTTAGGATTGGTATTGATCATCAGCAACCTCATCATCATCATACTCTTCCTCATCATCTGCTGTAGCATCCTGGTATTGTTGATATTCTGCAACCAAATCATTCATGTTGCTCTCGGCTTCAGTGAACTCCATTTCATCCATTCCTTCACCTGTGTACCAATGCAAGAAAGCCTTGCGCCTGAACATGGCAGTAAACTGCTCACTCACCCTTCTAAACATCTCCTGAATGGAGGTTGAATTTCCAACAAACGTGGATGCCATCTTCAGCCCAGTTGGTGGGATATCACACACACTAGACTTGACATTGTTAGGGATCCATTCAACAAAGTAGGACGAGTTCTTGTTCTGCACATTGATCATCTGTTCATCTACCTCCTTTGTGCTCATCTTACCCCTAAACATGGCAGAAGCTGTCAGGTAACGTCCATGACGGGGATCTGCCGCGCACATCATGTTCTTGGCATCCCACATTTGTTGAGTAAGCTCTGGCACTGTTAGCGATATGTATTGCTGTGATCCACGAGAGGTTAGTGGGGCAAATCCCACCATGAAGAAGTGAAGACGTGGGAAGGGAATTAAATTCACA</genome_strand>
        <mrna_strand>TTTTTTTTTAGACCAATAAAAGACATTTCATTTCTCAACAAACCAAACAC--AGTTCAAATGAAGAGAAGACAATAGGAAACATAACAAGTTCACTTGGCAGAAATTGAACAAACCAACAATATATCAAATGTAGAGAAGTTTTTAGGATTGGTATTGATCATCAGCAACCTCATCATCATCATACTCTTCCTCATCATCTGCTGTAGCATCCTGGTATTGTTGATATTCTGCAACCAAATCATTCATGTTGCTCTCGGCTTCAGTGAACTCCATTTCATCCATTCCTTCACCTGTGTACCAATGCAAGAAAGCCTTGCGCCTGAACATGGCAGTAAACTGCTCACTCACCCTTCTAAACATCTCCTGAATGGAGGTTGAATTGCCAACAAACGTGGATGCCATCTTCAGCCCAGTTGGTGGGATATCACACACACTAGACTTGACATTGTTAGGGATCCATTCAACAAAGTAGGACGAGTTCTTGTTCTGCACATTGATCATCTGTTCATCTACCTCCTTTGTGCTCATCTTACCCCTAAACATGGCAGAAGCTGTCAGGTAACGTCCATGACGGGGATCTGCCGCGCACATCATGTTCTTGGCATCCCACATTTGTTGAGTAAGCTCTGGCACTGTTAGCGATATGTATTGCTGAGATCCACGAGAGGTTAGTGGGGCATATCCCACCATGAAGAAGTGAAGACGTGGGAAGGGAATTAAATTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589304" ref_strand="-" ref_description="SGN-E589304 [42876]">
      <seq>ccctttcccacgtcttcacttcttcaatggtgggatttgccccactaacctctcgtggatcacagcaatacatatctctaacagtgccagagcttactcaacaaatgtgggatgccaagtacatgatgtgcgccgcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcatcctattttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacatttgttggcaattcaacctccattcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttcactgaagccgagagcaacatgaatgatttggttgcagaatatcaacaataccaggatgctacagcagatgatgaggaagagtatgatgatgaggccgctgatgatcatgaatatgaatcctaaagacttgtctacatttgatatttgttggtttgttcaatttctgccaaagtgaacttgttatgtttcctattgtcttctcttcatttgactttgtgtttggtttgttgagaaatgaaatgtcttttattggtctaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="52207" stop="53524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52506" g_stop="53213" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="708" r_length="708" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="709" polyA_stop="727"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E589304" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589304" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52506" e_stop="53213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTCCCACGTCTTCACTTCTTC-ATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCC-AAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCT</genome_strand>
        <mrna_strand>CCCTTTCCCACGTCTTCACTTCTTCAATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCTCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGTACATGATGTGCGCCGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCATCCTATTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACATTTGTTGGCAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGAGGCCGCTGATGATCATGAATATGAATCCTAAAGACTTGTCTACATTTGATAT-TTGTTGGTTTGTTCAATTTCTGCCAAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTG-ACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603306" ref_strand="+" ref_description="SGN-E603306 [56392]">
      <seq>ctagaatagtatcttaagtgcaagaaactgcaatacacaaacaagtataagaagctactgtaatacagtatattcatatagaccaataaaagacatttcatttctcaacaaaccaaacacaaagttcaaatgaagagaagacaataggaaacataacaagttcactttggcagaaattgaacaaaccaacaaatatcaaatgtagacaagtctttagagattcatattcatgatcatcagcggcctcatcatcatactcttcctcatcatctgctgtagcatcctggtattgttgatattctgcaaccaaatcattcatgttgctctcggcttcagtgaactccatttcatccattccttcacctgtgtaccaatgcaagaaagccttgcgcctgaacatggcagtaaactgctcactcacccttctaaacatctcctgaatggaggttgaattgccaacaaatgtggatgccatcttcagcccagttggtgggatatcacacacactagacttgacattgttagggatccattcaacaaaataggatgagttcttgttctgcacattgatcatctgttcatctacctcctttgtgctcatcttacccctaaacatggcagaagctgtcaggtaaacgtccatgacggggatctgcggcgcacatcatgttcttggcatcccacatttgttgagtaagctctggcactgttagagatatgtattggtgtgatccacgagaggttagtgggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="53584" stop="52241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53268" g_stop="52542" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="753" r_length="729" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E603306" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E603306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53268" e_stop="52542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTGCAATACACCAACAAGTACAAGAAGCTACTGTAATACAGTATATTCATATAGACCAATAAAAGACATTTCATTTCTCAACAAACCAAACACAAAGTTCAAATGAAGAGAAGACAATAGGAAACATAACAAGTTCAC-TTGGCAGAAATTGAACAAACCAACAATATATCAAATGTAGAGAAGTTTTTAG-GATTGGTATTGATCATCAGCAACCTCATCATCATCATACTCTTCCTCATCATCTGCTGTAGCATCCTGGTATTGTTGATATTCTGCAACCAAATCATTCATGTTGCTCTCGGCTTCAGTGAACTCCATTTCATCCATTCCTTCACCTGTGTACCAATGCAAGAAAGCCTTGCGCCTGAACATGGCAGTAAACTGCTCACTCACCCTTCTAAACATCTCCTGAATGGAGGTTGAATTTCCAACAAACGTGGATGCCATCTTCAGCCCAGTTGGTGGGATATCACACACACTAGACTTGACATTGTTAGGGATCCATTCAACAAAGTAGGACGAGTTCTTGTTCTGCACATTGATCATCTGTTCATCTACCTCCTTTGTGCTCATCTTACCCCTAAACATGGCAGAAGCTGTCAGGT-AACGTCCATGACGGGGATCTGCCGCGCACATCATGTTCTTGGCATCCCACATTTGTTGAGTAAGCTCTGGCACTGTTAGCGATATGTATTGCTGTGATCCACGAGAGGTTAGTGGGGCA</genome_strand>
        <mrna_strand>AAACTGCAATACACAAACAAGTATAAGAAGCTACTGTAATACAGTATATTCATATAGACCAATAAAAGACATTTCATTTCTCAACAAACCAAACACAAAGTTCAAATGAAGAGAAGACAATAGGAAACATAACAAGTTCACTTTGGCAGAAATTGAACAAACCAACAA-ATATCAAATGTAGACAAGTCTTTAGAGATTCATATTCATGATCATCAGCGGCCTCATCATCATACTCTTCCTCATCATCTGCTGTAGCATCCTGGTATTGTTGATATTCTGCAACCAAATCATTCATGTTGCTCTCGGCTTCAGTGAACTCCATTTCATCCATTCCTTCACCTGTGTACCAATGCAAGAAAGCCTTGCGCCTGAACATGGCAGTAAACTGCTCACTCACCCTTCTAAACATCTCCTGAATGGAGGTTGAATTGCCAACAAATGTGGATGCCATCTTCAGCCCAGTTGGTGGGATATCACACACACTAGACTTGACATTGTTAGGGATCCATTCAACAAAATAGGATGAGTTCTTGTTCTGCACATTGATCATCTGTTCATCTACCTCCTTTGTGCTCATCTTACCCCTAAACATGGCAGAAGCTGTCAGGTAAACGTCCATGACGGGGATCTGCGGCGCACATCATGTTCTTGGCATCCCACATTTGTTGAGTAAGCTCTGGCACTGTTAGAGATATGTATTGGTGTGATCCACGAGAGGTTAGTGGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438034" ref_strand="+" ref_description="SGN-E438034 [cSTA-5-N18]">
      <seq>attcatgttgctctcggcttcagtgaactccatttcatccattccttcacctgtgtaccaatgcaagaaagccttgcgcctgaacatggcagtaaactgctcactcacccttctaaacatctcctgaatggaggttgaattgccaacaaatgtggatgccatcttcagcccagttggtgggatatcacacacactagacttgacattgttagggatccattcaacaaagtaggatgagttcttgttctgcacattgatcatctgttcatctacctcctttgtgctcatcttacgcctaaacatggcagaagctgtcaggtaacgtccatgacggggatctgcggcgcacatcatgttcttggcatcccacatttgttgagtaagctctggcactgttagagatatgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="53280" stop="52271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52980" g_stop="52571" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E438034" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52980" e_stop="52571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATGTTGCTCTCGGCTTCAGTGAACTCCATTTCATCCATTCCTTCACCTGTGTACCAATGCAAGAAAGCCTTGCGCCTGAACATGGCAGTAAACTGCTCACTCACCCTTCTAAACATCTCCTGAATGGAGGTTGAATTTCCAACAAACGTGGATGCCATCTTCAGCCCAGTTGGTGGGATATCACACACACTAGACTTGACATTGTTAGGGATCCATTCAACAAAGTAGGACGAGTTCTTGTTCTGCACATTGATCATCTGTTCATCTACCTCCTTTGTGCTCATCTTACCCCTAAACATGGCAGAAGCTGTCAGGTAACGTCCATGACGGGGATCTGCCGCGCACATCATGTTCTTGGCATCCCACATTTGTTGAGTAAGCTCTGGCACTGTTAGCGATATGTATT</genome_strand>
        <mrna_strand>ATTCATGTTGCTCTCGGCTTCAGTGAACTCCATTTCATCCATTCCTTCACCTGTGTACCAATGCAAGAAAGCCTTGCGCCTGAACATGGCAGTAAACTGCTCACTCACCCTTCTAAACATCTCCTGAATGGAGGTTGAATTGCCAACAAATGTGGATGCCATCTTCAGCCCAGTTGGTGGGATATCACACACACTAGACTTGACATTGTTAGGGATCCATTCAACAAAGTAGGATGAGTTCTTGTTCTGCACATTGATCATCTGTTCATCTACCTCCTTTGTGCTCATCTTACGCCTAAACATGGCAGAAGCTGTCAGGTAACGTCCATGACGGGGATCTGCGGCGCACATCATGTTCTTGGCATCCCACATTTGTTGAGTAAGCTCTGGCACTGTTAGAGATATGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414451" ref_strand="-" ref_description="SGN-E414451 [STM-19-F13]">
      <seq>ggatgccaagaccatgatgtgcgccgcagatccacgtcatggacgttccctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaccagatgatcaatgtgcagaccaagaactcatcttactttgttgaatggatccctaacaatgtcaagtttagtgtgtgtgatatcccaccaactgggctgaagatggcatccacatttgttggcaattcaccctccattcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttcactgaagccgagagcaacatgaatgatttggttgcagaatatcaacaataccaggatgctacagcagatgatgaggaagagtatgatgatgaggccgctgatgatcatcaatatgaatcctaaagacttgtctacatttgatatttgttggtttgttcaatttctgccaaagtgaacttgttatgtttcctattgtcttctcttcatttgaactttgtgtttggtttgttgagaaatgaaaggaatattattggtctaaaaaaaaaatttttggttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="52314" stop="53531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52614" g_stop="53213" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="601" polyA_stop="611"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E414451" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414451" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52614" e_stop="53213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCC-AAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCT</genome_strand>
        <mrna_strand>GGATGCCAAGACCATGATGTGCGCCGCAGATCCACGTCATGGACGTTCCCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGACCAGATGATCAATGTGCAGACCAAGAACTCATCTTACTTTGTTGAATGGATCCCTAACAATGTCAAGTTTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACATTTGTTGGCAATTCACCCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGAGGCCGCTGATGATCATCAATATGAATCCTAAAGACTTGTCTACATTTGATAT-TTGTTGGTTTGTTCAATTTCTGCCAAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAAGGAATATTATTGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716152" ref_strand="+" ref_description="SGN-E716152 [FB16BA08]">
      <seq>aagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcgtcctactttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacgtttgttggcaattcaacctccattcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttcactgaagccgagagcaacatgaatgatttggttgcagaatatcaacaataccaggatgctacagcagatgatgaggaagagtatgatgatgatgaggttgctgatgatcaataccaatcctaaaaacttctctacatttgatatattgttggtttgttcaatttctgccaagtgaacttgttatgtttcctattgtcttctcttcatttgaactgtgtttggtttgttgagaaatgaaatgtcttttattggtctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="52321" stop="53522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52621" g_stop="53223" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E716152" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52621" e_stop="53223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTATATGAATAT</genome_strand>
        <mrna_strand>AAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGCAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAAC--TGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716198" ref_strand="+" ref_description="SGN-E716198 [FB16BE11]">
      <seq>aagaacatgatgtgcgcggcagatccccgtcatggacgttacctgacagcttctgccatgtttaggggtaagatgagcacaaaggaggtagatgaacagatgatcaatgtgcagaacaagaactcgtcctactttgttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacgtttgttggcaattcaacctccattcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttcactgaagccgagagcaacatgaatgatttggttgcagaatatcaacaataccaggatgctacagcagatgatgaggaagagtatgatgatgatgaggttgctgatgatcaataccaatcctaaaaacttctctacatttgatatattgttggtttgttcaatttctgccaagtgaacttgttatgtttcctattgtcttctcttcatttgaactgtgtttggtttgttgagaaatgaaatgtcttttattggtctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="52321" stop="53522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52621" g_stop="53223" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E716198" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52621" e_stop="53223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTATATGAATAT</genome_strand>
        <mrna_strand>AAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGCAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAAC--TGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277539" ref_strand="+" ref_description="SGN-E277539 [cLER-6-C19]">
      <seq>ttgaatggatccctaacaatgtcaagtctagtgtgtgtgatatcccaccaactgggctgaagatggcatccacgtttgttggaaattcaacctccattcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttcactgaagccgagagcaacatgaatgatttggttgcagaatatcaacaataccaggatgctacagcagatgatgaggaagagtatgatgatgatgaggttgctgatgatcaataccaatcctaaaaacttctctacatttgatatattgttggtttgttcaatttctgccaagtgaacttgttatgtttcctattgtcttctcttcatttgaactttgtgtttggtttgttgagaaatgaaatgtcttttattggtctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="52457" stop="53524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52757" g_stop="53224" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E277539" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52757" e_stop="53224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTATATGAATATA</genome_strand>
        <mrna_strand>TTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218522" ref_strand="+" ref_description="SGN-E218522 [cLEL-18-C8](-)">
      <seq>gtgtgatatcccaccaactgggctaagatggcatccacgtttgtggaaattcaacctccatcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttcactgaagccgagagcaacatgaatgatttggttgcagaatatcaacaataccaggatgctacagcagatgatgaggaagagtatgatgatgatgaggttgctgatgatcaataccaatcctaaaaacttctctacatttgatatattgttggtttgttcaatttctgccaagtgaacttgttatgtttcctattgtcttctcttcatttgaactttgtgtttggtttgttgagaaatgaaatgtcttttattggtctatatgcatatactgtattacagtagcttcttgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="52491" stop="53547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52791" g_stop="53244" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="470"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E218522" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52791" e_stop="53244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTATATGAATATACTGTATTACAGTAGCTTCTT</genome_strand>
        <mrna_strand>GTGTGATATCCCACCAACTGGGCT-AAGATGGCATCCACGTTTG-TGGAAATTCAACCTCCA-TCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTATATGCATATACTGTATTACAGTAGCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268063" ref_strand="+" ref_description="SGN-E268063 [cLEI-15-F2]">
      <seq>tatagaccaataaaagacatttcatttctcaacaaaccaaacacaaagttcaaatgaagagaagacaataggaaacataacaagttcacttggcagaaattgaacaaaccaacaatatatcaaatgtatagaagttcttaggattggtattgatcatcatcaacctcattatcatcatactctttctcatcatctgctgtaacgtactggtattgttgatattctgcaaccaaatcattcatgttgctctcggcttgagagaactccatttcattcattccttcacctgtgtgccaatgcaagaaagcctagcgcctgaacatggcagtgaactgctcactcacccttctaaacatctcctgaatggaggttgaatttccaacaaacgtggatgccattttcagcccacttggggggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="53516" stop="52497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53216" g_stop="52797" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E268063" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53216" e_stop="52797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGACCAATAAAAGACATTTCATTTCTCAACAAACCAAACACAAAGTTCAAATGAAGAGAAGACAATAGGAAACATAACAAGTTCACTTGGCAGAAATTGAACAAACCAACAATATATCAAATGTAGAGAAGTTTTTAGGATTGGTATTGATCATCAGCAACCTCATCATCATCATACTCTTCCTCATCATCTGCTGTAGCATCCTGGTATTGTTGATATTCTGCAACCAAATCATTCATGTTGCTCTCGGCTTCAGTGAACTCCATTTCATCCATTCCTTCACCTGTGTACCAATGCAAGAAAGCCTTGCGCCTGAACATGGCAGTAAACTGCTCACTCACCCTTCTAAACATCTCCTGAATGGAGGTTGAATTTCCAACAAACGTGGATGCCATCTTCAGCCCAGTTGGTGGGATA</genome_strand>
        <mrna_strand>TATAGACCAATAAAAGACATTTCATTTCTCAACAAACCAAACACAAAGTTCAAATGAAGAGAAGACAATAGGAAACATAACAAGTTCACTTGGCAGAAATTGAACAAACCAACAATATATCAAATGTATAGAAGTTCTTAGGATTGGTATTGATCATCATCAACCTCATTATCATCATACTCTTTCTCATCATCTGCTGTAACGTACTGGTATTGTTGATATTCTGCAACCAAATCATTCATGTTGCTCTCGGCTTGAGAGAACTCCATTTCATTCATTCCTTCACCTGTGTGCCAATGCAAGAAAGCCTAGCGCCTGAACATGGCAGTGAACTGCTCACTCACCCTTCTAAACATCTCCTGAATGGAGGTTGAATTTCCAACAAACGTGGATGCCATTTTCAGCCCACTTGGGGGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225964" ref_strand="+" ref_description="SGN-E225964 [cLEL-31-K20](-)">
      <seq>gcatccacgtttgttggaaattcaacctccatcaggaaatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttcactgaagccgagagcaacatgaatgatttggttgcagaatatcaacaataccaggatgctacagcagatgatgaggaagagtatgatgatgatgaggttgctgatgatcaataccaatcctaaaaacttctctacatttgatatattgttggtttgttcaatttctgccaagtgaacttgttatgttcccaattgtcttctcttcatttgaactttgtgtttggtttgttaaaaaatgaaatgtcttttattggtctatacgaatatactgtattacagtagcttcttgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="52522" stop="53547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52822" g_stop="53244" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="442"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E225964" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52822" e_stop="53244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTATATGAATATACTGTATTACAGTAGCTTCTT</genome_strand>
        <mrna_strand>GCATCCACGTTTGTTGGAAATTCAACCTCCA-TCAGGAAATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTCCCAATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTAAAAAATGAAATGTCTTTTATTGGTCTATACGAATATACTGTATTACAGTAGCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228976" ref_strand="+" ref_description="SGN-E228976 [cLEL-29-J13](-)">
      <seq>gttggaaattcaacctccattcaggagatgtttagaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttcactgaagccgagagcaacatgaatgatttggttgcagaatatcaacaataccaggatgctacagcagatgatgaggaagagtatgatgatgatgaggttgctgatgatcaataccaatcctaaaaacttctctacatttgatatattgttggtttgttcaatttctgccaagtgaacttgttatgtttcctattgtcttctcttcatttgaactttgtgtttggtttgttgagaaatgaaatgtcttttattggtctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="52534" stop="53524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52834" g_stop="53213" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="381" polyA_stop="398"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E228976" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52834" e_stop="53213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCT</genome_strand>
        <mrna_strand>GTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228880" ref_strand="+" ref_description="SGN-E228880 [cLEL-29-J13](-)">
      <seq>tgtttagaagggtgagtgagcagttttctgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggatgaaatggagttctctgaagccgagagcaacatgaatgatttggttgcagaatatcaacaataccaggatgctccagcagatgatgaggaagagtatgatgatgatgaggttgctgatgatcaataccaatcctaaaaacttctctacatttgatatattgttggtttgttcaatttctgccaagtgaacctgttatgtttcctattgtcttctcttcatttgaactttgtgtttggtttgttgagaaatgaaatgtcttttattggtctcccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="52562" stop="53513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52862" g_stop="53213" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="356" polyA_stop="370"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E228880" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52862" e_stop="53213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCT</genome_strand>
        <mrna_strand>TGTTTAGAAGGGTGAGTGAGCAGTTTTCTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCTCTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTCCAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACCTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232292" ref_strand="+" ref_description="SGN-E232292 [cLEL-5-E19](-)">
      <seq>tgtttaaaagggtgagtgagcagtttactgccatgttcaggcgcaaggctttcttgcattggtacacaggtgaaggaatggataaaatggagttcactgaagccgagagcaacatgaatgatttggttgcagaatatcaacaataccaggatgctacagcagatgatgaggaagagtatgatgatgatgaggttgctgatgatcaataccaatcctaaaaacttctctacatttgatatattgttggtttgttcaatttctgccaagtgaacttgttatgtttcctattgtcttctcttcatttgaactttgtgtttggtttgctgagaaatgaaatgtcttttattggtctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="52562" stop="53524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52862" g_stop="53213" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="353" polyA_stop="369"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E232292" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52862" e_stop="53213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCT</genome_strand>
        <mrna_strand>TGTTTAAAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATAAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGCTGAGAAATGAAATGTCTTTTATTGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218945" ref_strand="+" ref_description="SGN-E218945 [cLEL-18-C8](-)">
      <seq>catgaatgatttggttgcagaatatcaacaataccaggatgctacagcagatgatgaggaagagtatgatgatgatgaggttgctgatgatcaataccaatcctaaaaacttctctacatttgatatattgttggtttgttcaatttctgccaagtgaacttgttatgtttcctattgtcttctcttcatttgaactttgtgtttggtttgttgagaaatgaaatgtcttttattggtctatatgaatatactgtattacagtagcttcttgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="52674" stop="53547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52974" g_stop="53244" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="274" polyA_stop="291"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E218945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52974" e_stop="53244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTATATGAATATACTGTATTACAGTAGCTTCTT</genome_strand>
        <mrna_strand>CATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTATATGAATATACTGTATTACAGTAGCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416543" ref_strand="+" ref_description="SGN-E416543 [STM-23-M23]">
      <seq>ataaaagacatttcttttctcaacaaaccaaacacaaagttcaaatgaagagaagacaataggaaacataacaagttcactttggcagaaattgaacaaaccaacaaatatcaaatgtacacaagcctttaggattcatattgatgatcatcagcggcctcatcatcatactcttcctcatcatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="53507" stop="52720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53207" g_stop="53020" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E416543" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53207" e_stop="53020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAGACATTTCATTTCTCAACAAACCAAACACAAAGTTCAAATGAAGAGAAGACAATAGGAAACATAACAAGTTCAC-TTGGCAGAAATTGAACAAACCAACAATATATCAAATGTAGAGAAGTTTTTAGGATTGGTATTGATCATCAGCAACCTCATCATCATCATACTCTTCCTCATCATCTGC</genome_strand>
        <mrna_strand>ATAAAAGACATTTCTTTTCTCAACAAACCAAACACAAAGTTCAAATGAAGAGAAGACAATAGGAAACATAACAAGTTCACTTTGGCAGAAATTGAACAAACCAACAA-ATATCAAATGTACACAAGCCTTTAGGATTCATATTGATGATCATCAGCGGCCTCATCATCATACTCTTCCTCATCATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321354" ref_strand="+" ref_description="SGN-E321354 [cTOB-23-F20]">
      <seq>gtaatttggggttccaagaagaggagatctaatcgacgaatcgattcttcttcttctcccgtcgtcaactcatcaagtagttcgaaaatcgatggaaacgaaattgaacccaaaattaaagctgaagttactagccctgctagccctgctactcctctttcattttccccaagtgaatctgatgaaaaatccaaacattcttctcgcagaagctataaacgaaagacgagggaggagctaatggataaaataaaacaattatctcaatgcagagaatcgcttacaggggaagtggagaatgttcgtaattactacaataatcaaaaagcttacaatatgaagttgaaagcaatgaaagaagaggtaacaagaatggtgaatttccaagggggtggtgttaatttaggtcaactttactctaatcctggaatagagcccaatcgtcaacagccgttcattatggatcaggttgcttcaagatcagaagctattcatagatttcaatacccattgggccagctgcaacaggcccaacatttgtactcaaatgggttgggcccaggcccaatgggccttcctgatctgaatgttaaggtggaagaggctttcgcattggaccagttcgatatcgatagaaatgatgttgaaaggaagcccaatatgctgaagctagaaggaagaggaggattaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="56817" stop="54695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56517" g_stop="56293" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56292" i_stop="55939" i_length="354">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55938" g_stop="55876" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="288" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55875" i_stop="55766" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55765" g_stop="55691" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="363" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55690" i_stop="55329" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55328" g_stop="54996" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="695" r_length="332" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E321354" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56517" e_stop="56293"/>
          <exon e_start="55938" e_stop="55876"/>
          <exon e_start="55765" e_stop="55691"/>
          <exon e_start="55328" e_stop="54996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTTGGGGTTCCAAGAAGAGGAGATCTAATCGACGAATCGATTCTTCTTCTTCTCCCGTCGTCAACTCATCAAGTAGTTCGAAAATCGATGGAAACGAAATTGAACCCAAAATTAAAGCTGAAGTTACTAGCCCTGCTAGCCCTGCTACTCCTCTTTCATTTTCCCCAAGTGAATCTGATGAAAAATCCAAACATTCTTCTCGCAGAAGCTATAAACGAAAGGTACTATTCTCAACCCCCTCTCTCTCTTCTTCTTCTTCTTCATGAATTCATAATTGTTAATTGATTTTCAAAATTGCTTTCATCGATTTCGATATCTAATATCTTTTTCTCTCTCTAGTAACCAGTTTCAATGCCTACCCTATTTCGGATAATTTTTGTTTTATGACATTTTAAACTTCGTTACAACAACAACAACGAATATCACAATTATGAATAACATATGCAGTGAAATCTCAGATTATTTTTGAAAGATCTTTGGCTATGAATTTTAAATCTTGTTGCAAAAAAATTGTATGTTTATGATTGGGGATTTGGTGAATGATTTGAGTTTTAAAATTGTTGATTGGTTTGCAGACGAGGGAGGAGCTAATGGATAAAATAAAACAATTATCTCAATGCAGAGAATCGCTTACAGGGGTAAGTTTGTAAATTCCTTCAACATAAATTTAGTTTTTTTTTTTTCAATTTTCTTTTCCTAAATTATCCTCTGTCTTTTTTTTTTAATTGATTTAATGGAATTTGTACAGGAAGTGGAGAATGTTCGTAATTACTACAATAATCAAAAAGCTTACAATATGAAGTTGAAAGCAATGAAAGAAGAGGTAAATATTCATCTCTATTTTTGGTAAAAATCTTTATTATTTTCTCATTTTTTTGAGATTTGTGATCGTGGTTGCGTAATTTGTTCACAAAATTGATCATTTGCTACACTAATCAAATGAAAGAACGTTTTAATTTAACTCGTGATAGCATATTATTATTCTATTTTTGAAGTTTTATTATTAGCTTACGACAAAAAGTGTATAATTTAACTCGTGATGGCATATTATTACTCTAGTTTTTGAGGTTCGCATATTAGTTTATGTCAAAAAGTGTAAAATGATAACTTAATTAATATTTTTTTTAAGTTTGCTTGTTAGCAATCAGGTTAACAACCTTCTTCCGTATCGTTAATTAAATACAGGTAACAAGAATGGTGAATTTCCAAGGGGGTGGTGTTAATTTAGGTCAACTTTACTCTAATCCTGGAATAGAGCCCAATCGTCAACAGCCGTTCATTATGGATCAGGTTGCTTCAAGATCAGAAGCTATTCATAGATTTCAATACCCATTGGGCCAGCTGCAACAGGCCCAACATTTGTACTCAAATGGGTTGGGCCCAGGCCCAATGGGCCTTCCTGATCTGAATGTTAAGGTGGAAGAGGCTTTCGCATTGGACCAGTTCGATATCGATAGAATGAATGTTGAAAGGAAGGCCCAATATGCTGAAGCTAGAAGGAAGAGGAGGATTAAAAGA</genome_strand>
        <mrna_strand>GTAATTTGGGGTTCCAAGAAGAGGAGATCTAATCGACGAATCGATTCTTCTTCTTCTCCCGTCGTCAACTCATCAAGTAGTTCGAAAATCGATGGAAACGAAATTGAACCCAAAATTAAAGCTGAAGTTACTAGCCCTGCTAGCCCTGCTACTCCTCTTTCATTTTCCCCAAGTGAATCTGATGAAAAATCCAAACATTCTTCTCGCAGAAGCTATAAACGAAAG..................................................................................................................................................................................................................................................................................................................................................................ACGAGGGAGGAGCTAATGGATAAAATAAAACAATTATCTCAATGCAGAGAATCGCTTACAGGG..............................................................................................................GAAGTGGAGAATGTTCGTAATTACTACAATAATCAAAAAGCTTACAATATGAAGTTGAAAGCAATGAAAGAAGAG..........................................................................................................................................................................................................................................................................................................................................................................GTAACAAGAATGGTGAATTTCCAAGGGGGTGGTGTTAATTTAGGTCAACTTTACTCTAATCCTGGAATAGAGCCCAATCGTCAACAGCCGTTCATTATGGATCAGGTTGCTTCAAGATCAGAAGCTATTCATAGATTTCAATACCCATTGGGCCAGCTGCAACAGGCCCAACATTTGTACTCAAATGGGTTGGGCCCAGGCCCAATGGGCCTTCCTGATCTGAATGTTAAGGTGGAAGAGGCTTTCGCATTGGACCAGTTCGATATCGATAGAAATGATGTTGAAAGGAA-GCCCAATATGCTGAAGCTAGAAGGAAGAGGAGGATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545356" ref_strand="+" ref_description="SGN-E545356 [TUS-68-C15]">
      <seq>ttcagaaccgccgcaaaattcaacaagaatgaaaaacagcaagcagaacgaactgtgtgatttgtttcgtaatccatctaaagatgaaattgaagtagtaaaaattctactcgatctcgaaaatctagtgagagaaagacaatattgttcggtaatttggggttccaagaagaggagatctaatcgacgaatcgattcttcttcttctcccgtcgtcaactcatcaagtagttcgaaaatcgatggaaacgaaattgaacccaaaattaaagctgaagttactagccctgctagccctgctactcctctttcattttccccaagtgaatctgatgaaaaatccaaacattcttctcgcagaagctataaacgaaagacgagggaggagctaatggataaaataaaacaattatctcaatgcagagaatcgcttacaggggaagtggagaatgttcgtaattactacaataatcaaaaagcttacaatatgaagttgaaagcaatgaaagaagaggtaacaagaatggtgaatttccaagggggtggtgttaatttaggtcaactttactctaatcctggaatagagcccaatcgtcaacagccgttcattatggatcaggttgcttcaagatcagaagctattcatagatttcaatacccattgggccagctgcaacaggcccaacatttgtactcaaatgggttgggcccaggcccaatgggccttcctgatctgaatgttaaaggtggaagaggctttcgcattggaccagttcgatatcgatagaatgaatggtgaaaaggaaggcccnatatgctgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="56968" stop="54720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56668" g_stop="56293" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56292" i_stop="55939" i_length="354">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55938" g_stop="55876" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="439" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55875" i_stop="55766" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55765" g_stop="55691" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="514" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55690" i_stop="55329" i_length="362">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55328" g_stop="55020" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="825" r_length="311" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E545356" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56668" e_stop="56293"/>
          <exon e_start="55938" e_stop="55876"/>
          <exon e_start="55765" e_stop="55691"/>
          <exon e_start="55328" e_stop="55020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGAACCGCCGCAAAATTCAACAAGAATGAAAAACAGCAAGCAGAACGAACTGTGTGATTTGTTTCGTAATCCATCTAAAGATGAAATTGAAGTAGTAAAAATTCTACTCGATCTCGAAAATCTAGTGAGAGAAAGACAATATTGTTCGGTAATTTGGGGTTCCAAGAAGAGGAGATCTAATCGACGAATCGATTCTTCTTCTTCTCCCGTCGTCAACTCATCAAGTAGTTCGAAAATCGATGGAAACGAAATTGAACCCAAAATTAAAGCTGAAGTTACTAGCCCTGCTAGCCCTGCTACTCCTCTTTCATTTTCCCCAAGTGAATCTGATGAAAAATCCAAACATTCTTCTCGCAGAAGCTATAAACGAAAGGTACTATTCTCAACCCCCTCTCTCTCTTCTTCTTCTTCTTCATGAATTCATAATTGTTAATTGATTTTCAAAATTGCTTTCATCGATTTCGATATCTAATATCTTTTTCTCTCTCTAGTAACCAGTTTCAATGCCTACCCTATTTCGGATAATTTTTGTTTTATGACATTTTAAACTTCGTTACAACAACAACAACGAATATCACAATTATGAATAACATATGCAGTGAAATCTCAGATTATTTTTGAAAGATCTTTGGCTATGAATTTTAAATCTTGTTGCAAAAAAATTGTATGTTTATGATTGGGGATTTGGTGAATGATTTGAGTTTTAAAATTGTTGATTGGTTTGCAGACGAGGGAGGAGCTAATGGATAAAATAAAACAATTATCTCAATGCAGAGAATCGCTTACAGGGGTAAGTTTGTAAATTCCTTCAACATAAATTTAGTTTTTTTTTTTTCAATTTTCTTTTCCTAAATTATCCTCTGTCTTTTTTTTTTAATTGATTTAATGGAATTTGTACAGGAAGTGGAGAATGTTCGTAATTACTACAATAATCAAAAAGCTTACAATATGAAGTTGAAAGCAATGAAAGAAGAGGTAAATATTCATCTCTATTTTTGGTAAAAATCTTTATTATTTTCTCATTTTTTTGAGATTTGTGATCGTGGTTGCGTAATTTGTTCACAAAATTGATCATTTGCTACACTAATCAAATGAAAGAACGTTTTAATTTAACTCGTGATAGCATATTATTATTCTATTTTTGAAGTTTTATTATTAGCTTACGACAAAAAGTGTATAATTTAACTCGTGATGGCATATTATTACTCTAGTTTTTGAGGTTCGCATATTAGTTTATGTCAAAAAGTGTAAAATGATAACTTAATTAATATTTTTTTTAAGTTTGCTTGTTAGCAATCAGGTTAACAACCTTCTTCCGTATCGTTAATTAAATACAGGTAACAAGAATGGTGAATTTCCAAGGGGGTGGTGTTAATTTAGGTCAACTTTACTCTAATCCTGGAATAGAGCCCAATCGTCAACAGCCGTTCATTATGGATCAGGTTGCTTCAAGATCAGAAGCTATTCATAGATTTCAATACCCATTGGGCCAGCTGCAACAGGCCCAACATTTGTACTCAAATGGGTTGGGCCCAGGCCCAATGGGCCTTCCTGATCTGAATGTT-AAGGTGGAAGAGGCTTTCGCATTGGACCAGTTCGATATCGATAGAATGAATGTTG-AAAGGAAGGCCCAATATGCTGAAGCT</genome_strand>
        <mrna_strand>TTCAGAACCGCCGCAAAATTCAACAAGAATGAAAAACAGCAAGCAGAACGAACTGTGTGATTTGTTTCGTAATCCATCTAAAGATGAAATTGAAGTAGTAAAAATTCTACTCGATCTCGAAAATCTAGTGAGAGAAAGACAATATTGTTCGGTAATTTGGGGTTCCAAGAAGAGGAGATCTAATCGACGAATCGATTCTTCTTCTTCTCCCGTCGTCAACTCATCAAGTAGTTCGAAAATCGATGGAAACGAAATTGAACCCAAAATTAAAGCTGAAGTTACTAGCCCTGCTAGCCCTGCTACTCCTCTTTCATTTTCCCCAAGTGAATCTGATGAAAAATCCAAACATTCTTCTCGCAGAAGCTATAAACGAAAG..................................................................................................................................................................................................................................................................................................................................................................ACGAGGGAGGAGCTAATGGATAAAATAAAACAATTATCTCAATGCAGAGAATCGCTTACAGGG..............................................................................................................GAAGTGGAGAATGTTCGTAATTACTACAATAATCAAAAAGCTTACAATATGAAGTTGAAAGCAATGAAAGAAGAG..........................................................................................................................................................................................................................................................................................................................................................................GTAACAAGAATGGTGAATTTCCAAGGGGGTGGTGTTAATTTAGGTCAACTTTACTCTAATCCTGGAATAGAGCCCAATCGTCAACAGCCGTTCATTATGGATCAGGTTGCTTCAAGATCAGAAGCTATTCATAGATTTCAATACCCATTGGGCCAGCTGCAACAGGCCCAACATTTGTACTCAAATGGGTTGGGCCCAGGCCCAATGGGCCTTCCTGATCTGAATGTTAAAGGTGGAAGAGGCTTTCGCATTGGACCAGTTCGATATCGATAGAATGAATGGTGAAAAGGAAGGCCCNATATGCTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309811" ref_strand="+" ref_description="SGN-E309811 [cLEZ-10-K9]">
      <seq>tcagaaccgccgcaaaattcaacaagaatgaaaaacagcaagcacaacgaactgtgtgatttgtttcgtaatccatctaaagatgaaattgaagtagtaaaaattctactcgatctcgaaaatctagtgagagaaagacaatattgctcggtaatttggggttccaagaagaggagatctaatcgacgaatcgattcttcttcttctcccgtcgtcaactcatcaagtagatcgaaaatcgatggaaacgaaattgaacccaaaattaaagctgaagttactagccctgctagccctgctactcctctttcattttccccaagcgaatctgatgaaaaatacaaacattcttctcgcagaagctataaacgaaagacgagggaggagctaatggataaaataaaacaattatctcaatgcagagaatcgcttacaggggaagtggagaatgttcgtaattactacaataatcaaaacgcttacaatatgaagttgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="56967" stop="55405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56667" g_stop="56293" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56292" i_stop="55939" i_length="354">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55938" g_stop="55876" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="438" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55875" i_stop="55766" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55765" g_stop="55705" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="499" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E309811" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56667" e_stop="56293"/>
          <exon e_start="55938" e_stop="55876"/>
          <exon e_start="55765" e_stop="55705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAACCGCCGCAAAATTCAACAAGAATGAAAAACAGCAAGCAGAACGAACTGTGTGATTTGTTTCGTAATCCATCTAAAGATGAAATTGAAGTAGTAAAAATTCTACTCGATCTCGAAAATCTAGTGAGAGAAAGACAATATTGTTCGGTAATTTGGGGTTCCAAGAAGAGGAGATCTAATCGACGAATCGATTCTTCTTCTTCTCCCGTCGTCAACTCATCAAGTAGTTCGAAAATCGATGGAAACGAAATTGAACCCAAAATTAAAGCTGAAGTTACTAGCCCTGCTAGCCCTGCTACTCCTCTTTCATTTTCCCCAAGTGAATCTGATGAAAAATCCAAACATTCTTCTCGCAGAAGCTATAAACGAAAGGTACTATTCTCAACCCCCTCTCTCTCTTCTTCTTCTTCTTCATGAATTCATAATTGTTAATTGATTTTCAAAATTGCTTTCATCGATTTCGATATCTAATATCTTTTTCTCTCTCTAGTAACCAGTTTCAATGCCTACCCTATTTCGGATAATTTTTGTTTTATGACATTTTAAACTTCGTTACAACAACAACAACGAATATCACAATTATGAATAACATATGCAGTGAAATCTCAGATTATTTTTGAAAGATCTTTGGCTATGAATTTTAAATCTTGTTGCAAAAAAATTGTATGTTTATGATTGGGGATTTGGTGAATGATTTGAGTTTTAAAATTGTTGATTGGTTTGCAGACGAGGGAGGAGCTAATGGATAAAATAAAACAATTATCTCAATGCAGAGAATCGCTTACAGGGGTAAGTTTGTAAATTCCTTCAACATAAATTTAGTTTTTTTTTTTTCAATTTTCTTTTCCTAAATTATCCTCTGTCTTTTTTTTTTAATTGATTTAATGGAATTTGTACAGGAAGTGGAGAATGTTCGTAATTACTACAATAATCAAAAAGCTTACAATATGAAGTTGAAAG</genome_strand>
        <mrna_strand>TCAGAACCGCCGCAAAATTCAACAAGAATGAAAAACAGCAAGCACAACGAACTGTGTGATTTGTTTCGTAATCCATCTAAAGATGAAATTGAAGTAGTAAAAATTCTACTCGATCTCGAAAATCTAGTGAGAGAAAGACAATATTGCTCGGTAATTTGGGGTTCCAAGAAGAGGAGATCTAATCGACGAATCGATTCTTCTTCTTCTCCCGTCGTCAACTCATCAAGTAGATCGAAAATCGATGGAAACGAAATTGAACCCAAAATTAAAGCTGAAGTTACTAGCCCTGCTAGCCCTGCTACTCCTCTTTCATTTTCCCCAAGCGAATCTGATGAAAAATACAAACATTCTTCTCGCAGAAGCTATAAACGAAAG..................................................................................................................................................................................................................................................................................................................................................................ACGAGGGAGGAGCTAATGGATAAAATAAAACAATTATCTCAATGCAGAGAATCGCTTACAGGG..............................................................................................................GAAGTGGAGAATGTTCGTAATTACTACAATAATCAAAACGCTTACAATATGAAGTTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="58879" stop="57849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58566" g_stop="58148" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="450" r_length="421" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58566" e_stop="58148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATAGCAAGAAGATATATGTTTTTCTTTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTTCAATTGTATAATTCGCAATTGTATAATTCGTTGACCTTTTTCTCTGCAATACTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAAATATATATTTTTGCATGTGTATACACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAGGAGAGCGAGAATGGAGAGTGGCGAGCGAGATTTCTGGGAAAGAGACG-CTGGCAAATTTTAGCTAACGTTTGCTATGGAACACAATTAAATCAAAC-CTAGCTATTCCATTTATTTTAGGTTATTAA</genome_strand>
        <mrna_strand>TGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTTA-GTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="58879" stop="57999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58566" g_stop="58273" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="325" r_length="295" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58566" e_stop="58273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATAGCAAGAAGATATATGTTTTTCTTTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTTCAATTGTATAATTCGCAATTGTATAATTCGTTGACCTTTTTCTCTGCAATACTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAAATATATATTTTTGCATGTGTATACACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="58879" stop="57999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58566" g_stop="58289" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="308" r_length="278" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58566" e_stop="58289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATAGCAAGAAGATATATGTTTTTCTTTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTTCAATTGTATAATTCGCAATTGTATAATTCGTTGACCTTTTTCTCTGCAATACTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAAATATATATTTTTGCATGTGTATACACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTATACACTTCTGT</genome_strand>
        <mrna_strand>TGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353023" ref_strand="-" ref_description="SGN-E353023 [cTOS-14-M24]">
      <seq>actttttcatcttgttgttatatatatcaatctacgcctcgtgaacttgctttaaaaaaaaagacagaagagagacgctcntgaggaaagagaccctttaaggattttctatgaatccttgtatcagcaagtgccagaaagtgaactagcagctatttggatgatggagtcaggtttgcttccaaaggacttggcgaagaaagtttttgagaagaaacaaaagaaggcccagcagctaaagcttggttcacctctgaaaacggttgtgactgtgaaaaagaccacggagtctgttactattaagaagacaacatcctcgtcaaccacgccatcaacacagaaaaagaaaacaccagattctggaaaaacggaatcaatgcagcggtcaaagaaacggaagcttaaggatgattcttctgaagaagactcagatgatggtttcattgcaactcttaaaagcacaaagagacagaaagcctcttgatgtttctaatggcttagtgaaattgtagatgagaaattaaatactctgttacatgcatttcaatttctccattatgtaaaagttgacctttgttctctcattttctccattgtgtttttccaggctctaaactttgaatacaattaaaaaaaaatgtatctcaaacttcattcattgcccttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="64548" stop="61508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64345" g_stop="64340" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="65" r_length="6" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64339" i_stop="64246" i_length="94">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64245" g_stop="64223" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="88" r_length="23" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64222" i_stop="64143" i_length="80">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64142" g_stop="64072" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="159" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64071" i_stop="62321" i_length="1751">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62320" g_stop="61808" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="672" r_length="513" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E353023" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353023" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64345" e_stop="64340"/>
          <exon e_start="64245" e_stop="64223"/>
          <exon e_start="64142" e_stop="64072"/>
          <exon e_start="62320" e_stop="61808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGTAAAGAAAGAGGAAGAGGATAAGAAGAAAGGAACCAAAAATGGAGACACCGTTGTGAAGAAGAAGGAAAAGAAAGTTTATGATTTGCCTGGACAGAAGAGAGACGCTCCTGAGGAAGTATGTTCCAAATTTGCATGTTAAAAAAAACATTTTTTATGGTTTCAATCTGATCTAATGTTATATTTTTTGATTTTCAGAGAGACCCTTTAAGGATTTTCTATGAATCCTTGTATCAGCAAGTGCCAGAAAGTGAACTAGCAGCTATTTGGTATAACATTCTACCTTTTAAATGATTTTGAATAAGTTATTCTTGGGTAACTCTCTTGTCGTTAGTGTTTTTGAGTATCGTGATGAAGCTGTCTCTATCTTCTTTGAGTTGGTGTTGGTTGAAAAAAATGAACCTTGAATATTATTATGTTCTTAAAGGTCAAATTTTGTTCTTGTCCTAACAGTGTGTGTGTTATCCACCTGGTTGATGCTTCTGTATTAGCTCATGCTTTCATTTAGCGTTCACTTTGTCGAATGAGTAACTATTCTTAGTCTAGTTGTTTAGATGTGTTCATTTTCAAACTGAAAGAAGAGTAGGGGTAAGAAACTTCTGTTTGTATCTGGGTGCCCCTTAGATGCATAGTGTATTTTTGCGTATTGTACAACAGATAGTGAAATATGAGGTGTGTTGCTTGAATGTCAACGTGTGTGGAAGAGCAAGTTGGCTGGAAACAGCTAAAGAAAGCTTGTGAAGTAAGCAGTTCTATGTGAAAAGAATAGCCCACACTCGTAAACTTATATGTCATTTTTTCGTCCCTTTTTTTTTAGTAAAGAAGCATCAGCATGATAGAAGTTGCATGCCTACAACTGAGATGCTTAGTGAAGTTGCTAATTGAGTAAGTATCCATTGGACAAGGAAATCTGTATCTTGACTTGGCCCTTTTCGCCCAGTTAAGTACAATACATATTTGGCCACCTTAGTCGTAATCTAAGAGGTTAAGCTTACTATGATCATCTAATGCGCTACTTTAGATTTGTTATAGGAAAAAATCTACTTTAGTTTGAATCTGCAGAAATCATCTTTCAAGTGTTTATTTGAACATAAGAAAAAATGAAATTATAAGTATATAAGCTTTGTTATAACTTCATTAAAACTTCCGTCTGGAATGAGAAAATGGATTGTTTCAACCCTTTGACACTATATGATGAGTTCAGCTGACTTCTGACTGAAATTGTGACATATCTAAGGTGAAAACTTTTCTGGTAGTGCATTTTTCCACTTATTGACTATGGTTTGATATCATCCTTATGCAAAGCACTGTGTCCCTGGGCACAAGCTTTTACATTGAGTGCTTGGGGGATTAAGTTAAAGTTGTCACCAAGAATAGTTTGTGATACTAATGAGTGTTGTTAGTGGTTATAATGCAAATTAATATGCGTGTCTGAAGCTTAAGATGTGAGTTTAGACTGTTTAGTCAGCTCATTTGACATGATTTTGATGAAATATTGGTGCAATTACTTCAACCAAAATCCCAGGGCTTACTTATGACTGTTCTGTTGCAGCACATGCGATGAAACTATTTAGCCCATTCTTTGCATTATCGTGCTTAGACGTCACTCAATTTCTTGAGATCTGCTGTGGATTGATGCTAAAAACTATGTCTAATGTTGCTCATCTAATCCCTGATACAAATTGTCACTCTTCCCTTTCTGTCTCACTAAATCCACCCCGATCACCAAACAAGCATTAGAACTAACATAAATTGAAGTAGTTTCTCTAATGAATTTGGCAGCTGTCTCAGTCTATAAATGTTAATAAAGCTGGCCAAACAATGTCTATGCATGAATGGTTCCTCCTCATCAACCCTTTTGACCATCACTGATGCTACAGAAAGGATCTCGATGGATCAAAATGTCTGCTTGCAACTGTTAACAACCAAATCCAGAGTTGTTCATGATGATTATAAAAACTACAACTGTCCCTTGCAGTTGGATTCAAGTAATCATATCCTGATACTGTTGTTCTTGCAGGATGATGGAGTCAGGTTTGCTTCCAAAGGACTTGGCGAAGAAAGTTTTTGAGAAGAAACAAAAGAAGGCCCAGCAGCTAAAGCTTGGTTCACCTCTGAAAACGGTTGTGACTGTGAAAAAGACCACGGAGTCTGTTACTATTAAGAAGACAACATCCTCGTCAACCACGCCATCAACACAGAAAAAGAAAACACCAGATTCTGGAAAAACGGAATCAATGCAGCGGTCAAAGAAACGGAAGCTTAAGGATGATTCTTCTGAAGAAGACTCAGATGATGGTTTCATTGCAACTCTTAAAAGCACAAAGAGACAGAAAGCCTCTTGATGTTTCTAATGGCTTAGTGAAATTGTAGATGAGAAATTAAATACTCTGTTACATGCATTTCAATTTCTCCATTATGTAAAAGTTGACCTTTGTTCTCTCATTTTCTCCATTGTGTTTTTCCAGGCTCTAAACTTTGAATACAATTAAAAAAAAATGTATCTCAAACTTCATTCATTGCCCTTAAGAAA</genome_strand>
        <mrna_strand>AAAGAC..............................................................................................AGAAGAGAGACGCTCNTGAGGAA................................................................................AGAGACCCTTTAAGGATTTTCTATGAATCCTTGTATCAGCAAGTGCCAGAAAGTGAACTAGCAGCTATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGGAGTCAGGTTTGCTTCCAAAGGACTTGGCGAAGAAAGTTTTTGAGAAGAAACAAAAGAAGGCCCAGCAGCTAAAGCTTGGTTCACCTCTGAAAACGGTTGTGACTGTGAAAAAGACCACGGAGTCTGTTACTATTAAGAAGACAACATCCTCGTCAACCACGCCATCAACACAGAAAAAGAAAACACCAGATTCTGGAAAAACGGAATCAATGCAGCGGTCAAAGAAACGGAAGCTTAAGGATGATTCTTCTGAAGAAGACTCAGATGATGGTTTCATTGCAACTCTTAAAAGCACAAAGAGACAGAAAGCCTCTTGATGTTTCTAATGGCTTAGTGAAATTGTAGATGAGAAATTAAATACTCTGTTACATGCATTTCAATTTCTCCATTATGTAAAAGTTGACCTTTGTTCTCTCATTTTCTCCATTGTGTTTTTCCAGGCTCTAAACTTTGAATACAATTAAAAAAAAATGTATCTCAAACTTCATTCATTGCCCTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397924" ref_strand="-" ref_description="SGN-E397924 [TUS-36-F23]">
      <seq>aaagttgtaaagaaagaggaagaggataagaagaaaggaaacaaaaatggagacaccgttgtgaagaagaaggaaaagaaagtttatgatttgcctggacagaagagagacgctcttgaggaaagagaccctttaaggattttctatgaatccttgtatcagcaagtgccagaaagtgaactagcagctatttggatgatggagtcaggtttgcttccaaaggacttggcgaagaaagtttttgagaagaaacaaaagaaggcccagcagctaaagcttggttcacctctgaaaacggttgtgactgtgaaaaagaccacggagtctgttactattaagaagacaacatcctcgtcaaccacgccatcaacacagaaaaagaaaacaccagattctggaaaaacggaatcaatgcagcggtcaaagaaacggaagcttaaggatgattcttctgaagaagactcagatgatggtttcattgcaactcttaaaagcacaaagagacagaaagcctcttgatgtttctaatggcttagtgaaattgtagatgagaaattaaatactctgttacatgcatttcaatttctccattatgtaaaagttgacctttgttctctcattttctccattgtgtttttccaggctctaaactttgaatacaattaaaaaaaaatgtatctcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="64645" stop="61531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64345" g_stop="64223" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64222" i_stop="64143" i_length="80">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64142" g_stop="64072" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="194" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64071" i_stop="62321" i_length="1751">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62320" g_stop="61828" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="687" r_length="493" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E397924" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397924" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64345" e_stop="64223"/>
          <exon e_start="64142" e_stop="64072"/>
          <exon e_start="62320" e_stop="61828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGTAAAGAAAGAGGAAGAGGATAAGAAGAAAGGAACCAAAAATGGAGACACCGTTGTGAAGAAGAAGGAAAAGAAAGTTTATGATTTGCCTGGACAGAAGAGAGACGCTCCTGAGGAAGTATGTTCCAAATTTGCATGTTAAAAAAAACATTTTTTATGGTTTCAATCTGATCTAATGTTATATTTTTTGATTTTCAGAGAGACCCTTTAAGGATTTTCTATGAATCCTTGTATCAGCAAGTGCCAGAAAGTGAACTAGCAGCTATTTGGTATAACATTCTACCTTTTAAATGATTTTGAATAAGTTATTCTTGGGTAACTCTCTTGTCGTTAGTGTTTTTGAGTATCGTGATGAAGCTGTCTCTATCTTCTTTGAGTTGGTGTTGGTTGAAAAAAATGAACCTTGAATATTATTATGTTCTTAAAGGTCAAATTTTGTTCTTGTCCTAACAGTGTGTGTGTTATCCACCTGGTTGATGCTTCTGTATTAGCTCATGCTTTCATTTAGCGTTCACTTTGTCGAATGAGTAACTATTCTTAGTCTAGTTGTTTAGATGTGTTCATTTTCAAACTGAAAGAAGAGTAGGGGTAAGAAACTTCTGTTTGTATCTGGGTGCCCCTTAGATGCATAGTGTATTTTTGCGTATTGTACAACAGATAGTGAAATATGAGGTGTGTTGCTTGAATGTCAACGTGTGTGGAAGAGCAAGTTGGCTGGAAACAGCTAAAGAAAGCTTGTGAAGTAAGCAGTTCTATGTGAAAAGAATAGCCCACACTCGTAAACTTATATGTCATTTTTTCGTCCCTTTTTTTTTAGTAAAGAAGCATCAGCATGATAGAAGTTGCATGCCTACAACTGAGATGCTTAGTGAAGTTGCTAATTGAGTAAGTATCCATTGGACAAGGAAATCTGTATCTTGACTTGGCCCTTTTCGCCCAGTTAAGTACAATACATATTTGGCCACCTTAGTCGTAATCTAAGAGGTTAAGCTTACTATGATCATCTAATGCGCTACTTTAGATTTGTTATAGGAAAAAATCTACTTTAGTTTGAATCTGCAGAAATCATCTTTCAAGTGTTTATTTGAACATAAGAAAAAATGAAATTATAAGTATATAAGCTTTGTTATAACTTCATTAAAACTTCCGTCTGGAATGAGAAAATGGATTGTTTCAACCCTTTGACACTATATGATGAGTTCAGCTGACTTCTGACTGAAATTGTGACATATCTAAGGTGAAAACTTTTCTGGTAGTGCATTTTTCCACTTATTGACTATGGTTTGATATCATCCTTATGCAAAGCACTGTGTCCCTGGGCACAAGCTTTTACATTGAGTGCTTGGGGGATTAAGTTAAAGTTGTCACCAAGAATAGTTTGTGATACTAATGAGTGTTGTTAGTGGTTATAATGCAAATTAATATGCGTGTCTGAAGCTTAAGATGTGAGTTTAGACTGTTTAGTCAGCTCATTTGACATGATTTTGATGAAATATTGGTGCAATTACTTCAACCAAAATCCCAGGGCTTACTTATGACTGTTCTGTTGCAGCACATGCGATGAAACTATTTAGCCCATTCTTTGCATTATCGTGCTTAGACGTCACTCAATTTCTTGAGATCTGCTGTGGATTGATGCTAAAAACTATGTCTAATGTTGCTCATCTAATCCCTGATACAAATTGTCACTCTTCCCTTTCTGTCTCACTAAATCCACCCCGATCACCAAACAAGCATTAGAACTAACATAAATTGAAGTAGTTTCTCTAATGAATTTGGCAGCTGTCTCAGTCTATAAATGTTAATAAAGCTGGCCAAACAATGTCTATGCATGAATGGTTCCTCCTCATCAACCCTTTTGACCATCACTGATGCTACAGAAAGGATCTCGATGGATCAAAATGTCTGCTTGCAACTGTTAACAACCAAATCCAGAGTTGTTCATGATGATTATAAAAACTACAACTGTCCCTTGCAGTTGGATTCAAGTAATCATATCCTGATACTGTTGTTCTTGCAGGATGATGGAGTCAGGTTTGCTTCCAAAGGACTTGGCGAAGAAAGTTTTTGAGAAGAAACAAAAGAAGGCCCAGCAGCTAAAGCTTGGTTCACCTCTGAAAACGGTTGTGACTGTGAAAAAGACCACGGAGTCTGTTACTATTAAGAAGACAACATCCTCGTCAACCACGCCATCAACACAGAAAAAGAAAACACCAGATTCTGGAAAAACGGAATCAATGCAGCGGTCAAAGAAACGGAAGCTTAAGGATGATTCTTCTGAAGAAGACTCAGATGATGGTTTCATTGCAACTCTTAAAAGCACAAAGAGACAGAAAGCCTCTTGATGTTTCTAATGGCTTAGTGAAATTGTAGATGAGAAATTAAATACTCTGTTACATGCATTTCAATTTCTCCATTATGTAAAAGTTGACCTTTGTTCTCTCATTTTCTCCATTGTGTTTTTCCAGGCTCTAAACTTTGAATACAATTAAAAAAAAATGTATCTCAAACTT</genome_strand>
        <mrna_strand>AAAGTTGTAAAGAAAGAGGAAGAGGATAAGAAGAAAGGAAACAAAAATGGAGACACCGTTGTGAAGAAGAAGGAAAAGAAAGTTTATGATTTGCCTGGACAGAAGAGAGACGCTCTTGAGGAA................................................................................AGAGACCCTTTAAGGATTTTCTATGAATCCTTGTATCAGCAAGTGCCAGAAAGTGAACTAGCAGCTATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGGAGTCAGGTTTGCTTCCAAAGGACTTGGCGAAGAAAGTTTTTGAGAAGAAACAAAAGAAGGCCCAGCAGCTAAAGCTTGGTTCACCTCTGAAAACGGTTGTGACTGTGAAAAAGACCACGGAGTCTGTTACTATTAAGAAGACAACATCCTCGTCAACCACGCCATCAACACAGAAAAAGAAAACACCAGATTCTGGAAAAACGGAATCAATGCAGCGGTCAAAGAAACGGAAGCTTAAGGATGATTCTTCTGAAGAAGACTCAGATGATGGTTTCATTGCAACTCTTAAAAGCACAAAGAGACAGAAAGCCTCTTGATGTTTCTAATGGCTTAGTGAAATTGTAGATGAGAAATTAAATACTCTGTTACATGCATTTCAATTTCTCCATTATGTAAAAGTTGACCTTTGTTCTCTCATTTTCTCCATTGTGTTTTTCCAGGCTCTAAACTTTGAATACAATTAAAAAAAAATGTATCTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244645" ref_strand="-" ref_description="SGN-E244645 [cLED-38-C15]">
      <seq>aggattttctatgaatccttgtatcagcaagtgccagaaagtgaactagcagctatttggatgatggagtcaggtttgcttccaaaggacttggcgaagaaagtttttgagaagaaacaaaagaaggcccagcagctaaagcttggttcacctctgaaaacggttgtgactgtgaaaaagaccacggagtctgttactattaagaagacaacatcctcgtcaaccacgccatcaacacagaaaaagaaaacaccagattctggaaaaacggaatcaatgcagcggtcaaagaaacggaagcttaaggatgattcttctgaagaagactcagatgatggtttcattgcaactcttaaaagcacaaagagacagaaagcctcttgatgtttctaatggcttagtgaaattgtagatgagaaattaaatactctgttacatgcatttcaatttctccattatgtaaaagttgacctttgttctctcattttctccattgtgtttttccaggctctaaactttgaatacaattaaaaaaaaatgtatctcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="64430" stop="61531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64130" g_stop="64072" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64071" i_stop="62321" i_length="1751">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62320" g_stop="61829" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="551" r_length="492" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E244645" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244645" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64130" e_stop="64072"/>
          <exon e_start="62320" e_stop="61829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTTTCTATGAATCCTTGTATCAGCAAGTGCCAGAAAGTGAACTAGCAGCTATTTGGTATAACATTCTACCTTTTAAATGATTTTGAATAAGTTATTCTTGGGTAACTCTCTTGTCGTTAGTGTTTTTGAGTATCGTGATGAAGCTGTCTCTATCTTCTTTGAGTTGGTGTTGGTTGAAAAAAATGAACCTTGAATATTATTATGTTCTTAAAGGTCAAATTTTGTTCTTGTCCTAACAGTGTGTGTGTTATCCACCTGGTTGATGCTTCTGTATTAGCTCATGCTTTCATTTAGCGTTCACTTTGTCGAATGAGTAACTATTCTTAGTCTAGTTGTTTAGATGTGTTCATTTTCAAACTGAAAGAAGAGTAGGGGTAAGAAACTTCTGTTTGTATCTGGGTGCCCCTTAGATGCATAGTGTATTTTTGCGTATTGTACAACAGATAGTGAAATATGAGGTGTGTTGCTTGAATGTCAACGTGTGTGGAAGAGCAAGTTGGCTGGAAACAGCTAAAGAAAGCTTGTGAAGTAAGCAGTTCTATGTGAAAAGAATAGCCCACACTCGTAAACTTATATGTCATTTTTTCGTCCCTTTTTTTTTAGTAAAGAAGCATCAGCATGATAGAAGTTGCATGCCTACAACTGAGATGCTTAGTGAAGTTGCTAATTGAGTAAGTATCCATTGGACAAGGAAATCTGTATCTTGACTTGGCCCTTTTCGCCCAGTTAAGTACAATACATATTTGGCCACCTTAGTCGTAATCTAAGAGGTTAAGCTTACTATGATCATCTAATGCGCTACTTTAGATTTGTTATAGGAAAAAATCTACTTTAGTTTGAATCTGCAGAAATCATCTTTCAAGTGTTTATTTGAACATAAGAAAAAATGAAATTATAAGTATATAAGCTTTGTTATAACTTCATTAAAACTTCCGTCTGGAATGAGAAAATGGATTGTTTCAACCCTTTGACACTATATGATGAGTTCAGCTGACTTCTGACTGAAATTGTGACATATCTAAGGTGAAAACTTTTCTGGTAGTGCATTTTTCCACTTATTGACTATGGTTTGATATCATCCTTATGCAAAGCACTGTGTCCCTGGGCACAAGCTTTTACATTGAGTGCTTGGGGGATTAAGTTAAAGTTGTCACCAAGAATAGTTTGTGATACTAATGAGTGTTGTTAGTGGTTATAATGCAAATTAATATGCGTGTCTGAAGCTTAAGATGTGAGTTTAGACTGTTTAGTCAGCTCATTTGACATGATTTTGATGAAATATTGGTGCAATTACTTCAACCAAAATCCCAGGGCTTACTTATGACTGTTCTGTTGCAGCACATGCGATGAAACTATTTAGCCCATTCTTTGCATTATCGTGCTTAGACGTCACTCAATTTCTTGAGATCTGCTGTGGATTGATGCTAAAAACTATGTCTAATGTTGCTCATCTAATCCCTGATACAAATTGTCACTCTTCCCTTTCTGTCTCACTAAATCCACCCCGATCACCAAACAAGCATTAGAACTAACATAAATTGAAGTAGTTTCTCTAATGAATTTGGCAGCTGTCTCAGTCTATAAATGTTAATAAAGCTGGCCAAACAATGTCTATGCATGAATGGTTCCTCCTCATCAACCCTTTTGACCATCACTGATGCTACAGAAAGGATCTCGATGGATCAAAATGTCTGCTTGCAACTGTTAACAACCAAATCCAGAGTTGTTCATGATGATTATAAAAACTACAACTGTCCCTTGCAGTTGGATTCAAGTAATCATATCCTGATACTGTTGTTCTTGCAGGATGATGGAGTCAGGTTTGCTTCCAAAGGACTTGGCGAAGAAAGTTTTTGAGAAGAAACAAAAGAAGGCCCAGCAGCTAAAGCTTGGTTCACCTCTGAAAACGGTTGTGACTGTGAAAAAGACCACGGAGTCTGTTACTATTAAGAAGACAACATCCTCGTCAACCACGCCATCAACACAGAAAAAGAAAACACCAGATTCTGGAAAAACGGAATCAATGCAGCGGTCAAAGAAACGGAAGCTTAAGGATGATTCTTCTGAAGAAGACTCAGATGATGGTTTCATTGCAACTCTTAAAAGCACAAAGAGACAGAAAGCCTCTTGATGTTTCTAATGGCTTAGTGAAATTGTAGATGAGAAATTAAATACTCTGTTACATGCATTTCAATTTCTCCATTATGTAAAAGTTGACCTTTGTTCTCTCATTTTCTCCATTGTGTTTTTCCAGGCTCTAAACTTTGAATACAATTAAAAAAAAATGTATCTCAAACT</genome_strand>
        <mrna_strand>AGGATTTTCTATGAATCCTTGTATCAGCAAGTGCCAGAAAGTGAACTAGCAGCTATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGGAGTCAGGTTTGCTTCCAAAGGACTTGGCGAAGAAAGTTTTTGAGAAGAAACAAAAGAAGGCCCAGCAGCTAAAGCTTGGTTCACCTCTGAAAACGGTTGTGACTGTGAAAAAGACCACGGAGTCTGTTACTATTAAGAAGACAACATCCTCGTCAACCACGCCATCAACACAGAAAAAGAAAACACCAGATTCTGGAAAAACGGAATCAATGCAGCGGTCAAAGAAACGGAAGCTTAAGGATGATTCTTCTGAAGAAGACTCAGATGATGGTTTCATTGCAACTCTTAAAAGCACAAAGAGACAGAAAGCCTCTTGATGTTTCTAATGGCTTAGTGAAATTGTAGATGAGAAATTAAATACTCTGTTACATGCATTTCAATTTCTCCATTATGTAAAAGTTGACCTTTGTTCTCTCATTTTCTCCATTGTGTTTTTCCAGGCTCTAAACTTTGAATACAATTAAAAAAAAATGTATCTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232067" ref_strand="+" ref_description="SGN-E232067 [cLED-7-H7]">
      <seq>tttttgagatacatttttttttaattgtattcaaagtttagagcctggaaaaacacaatggagaaaatgagagaacaaaggtcaacttttacataatggagaaattgaaatgcatgtaacagagtatttaatttctcatctacaatttcactaagccattagaaacatcaagaggctttctgtctctttgtgcttttaagagttgcaatgaaaccatcatctgagtcttcttcagaagaatcatccttaagcttgcgtttctttgaccgctgcattgattccgtttttccagaatctggtgttttctttttctgtgttgatggcgtggttgacgaggatgttgtcttcttaatagtaacagactccgtggtctttttcacagtcacaaccgttttcagaggtgaaccaagctttagctgctgggccttcttttgtttcttctcaaaaactttcttcgccaagtcctttggaagcaaacctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="61531" stop="62611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61829" g_stop="62311" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E232067" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61829" e_stop="62311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGAGATACATTTTTTTTTAATTGTATTCAAAGTTTAGAGCCTGGAAAAACACAATGGAGAAAATGAGAGAACAAAGGTCAACTTTTACATAATGGAGAAATTGAAATGCATGTAACAGAGTATTTAATTTCTCATCTACAATTTCACTAAGCCATTAGAAACATCAAGAGGCTTTCTGTCTCTTTGTGCTTTTAAGAGTTGCAATGAAACCATCATCTGAGTCTTCTTCAGAAGAATCATCCTTAAGCTTCCGTTTCTTTGACCGCTGCATTGATTCCGTTTTTCCAGAATCTGGTGTTTTCTTTTTCTGTGTTGATGGCGTGGTTGACGAGGATGTTGTCTTCTTAATAGTAACAGACTCCGTGGTCTTTTTCACAGTCACAACCGTTTTCAGAGGTGAACCAAGCTTTAGCTGCTGGGCCTTCTTTTGTTTCTTCTCAAAAACTTTCTTCGCCAAGTCCTTTGGAAGCAAACCTGAC</genome_strand>
        <mrna_strand>TTTTTGAGATACATTTTTTTTTAATTGTATTCAAAGTTTAGAGCCTGGAAAAACACAATGGAGAAAATGAGAGAACAAAGGTCAACTTTTACATAATGGAGAAATTGAAATGCATGTAACAGAGTATTTAATTTCTCATCTACAATTTCACTAAGCCATTAGAAACATCAAGAGGCTTTCTGTCTCTTTGTGCTTTTAAGAGTTGCAATGAAACCATCATCTGAGTCTTCTTCAGAAGAATCATCCTTAAGCTTGCGTTTCTTTGACCGCTGCATTGATTCCGTTTTTCCAGAATCTGGTGTTTTCTTTTTCTGTGTTGATGGCGTGGTTGACGAGGATGTTGTCTTCTTAATAGTAACAGACTCCGTGGTCTTTTTCACAGTCACAACCGTTTTCAGAGGTGAACCAAGCTTTAGCTGCTGGGCCTTCTTTTGTTTCTTCTCAAAAACTTTCTTCGCCAAGTCCTTTGGAAGCAAACCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237492" ref_strand="+" ref_description="SGN-E237492 [cLED-19-E20]">
      <seq>tttttgagatacatttttttttaattgtattcaaagtttagagcctggaaaaacacaatggagaaaatgagagaacaaaggtcaacttttacataatggagaaattgaaatgcatgtaacagagtatttaatttctcatctacaatttcactaagccattagaaacatcaagaggctttctgtctctttgtgcttttaagagttgcaatgaaaccatcatctgagtcttcttcagaagaatcatccttaagcttccgtttctttgaccgctgcattgattccgtttttccagaatctggtgttttctttttctgtgttgatggcgtggttgacgaggatgttgtcttcttaatagtaacagactccgtggtctttttcacagtcacaaccgttttcagaggtgaaccaagctttagctgctgggccttcttttgtttcttctcaaaaactttcttcgccaagtcctttggaagcaaacctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="61531" stop="62611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61829" g_stop="62311" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E237492" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61829" e_stop="62311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGAGATACATTTTTTTTTAATTGTATTCAAAGTTTAGAGCCTGGAAAAACACAATGGAGAAAATGAGAGAACAAAGGTCAACTTTTACATAATGGAGAAATTGAAATGCATGTAACAGAGTATTTAATTTCTCATCTACAATTTCACTAAGCCATTAGAAACATCAAGAGGCTTTCTGTCTCTTTGTGCTTTTAAGAGTTGCAATGAAACCATCATCTGAGTCTTCTTCAGAAGAATCATCCTTAAGCTTCCGTTTCTTTGACCGCTGCATTGATTCCGTTTTTCCAGAATCTGGTGTTTTCTTTTTCTGTGTTGATGGCGTGGTTGACGAGGATGTTGTCTTCTTAATAGTAACAGACTCCGTGGTCTTTTTCACAGTCACAACCGTTTTCAGAGGTGAACCAAGCTTTAGCTGCTGGGCCTTCTTTTGTTTCTTCTCAAAAACTTTCTTCGCCAAGTCCTTTGGAAGCAAACCTGAC</genome_strand>
        <mrna_strand>TTTTTGAGATACATTTTTTTTTAATTGTATTCAAAGTTTAGAGCCTGGAAAAACACAATGGAGAAAATGAGAGAACAAAGGTCAACTTTTACATAATGGAGAAATTGAAATGCATGTAACAGAGTATTTAATTTCTCATCTACAATTTCACTAAGCCATTAGAAACATCAAGAGGCTTTCTGTCTCTTTGTGCTTTTAAGAGTTGCAATGAAACCATCATCTGAGTCTTCTTCAGAAGAATCATCCTTAAGCTTCCGTTTCTTTGACCGCTGCATTGATTCCGTTTTTCCAGAATCTGGTGTTTTCTTTTTCTGTGTTGATGGCGTGGTTGACGAGGATGTTGTCTTCTTAATAGTAACAGACTCCGTGGTCTTTTTCACAGTCACAACCGTTTTCAGAGGTGAACCAAGCTTTAGCTGCTGGGCCTTCTTTTGTTTCTTCTCAAAAACTTTCTTCGCCAAGTCCTTTGGAAGCAAACCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357913" ref_strand="+" ref_description="SGN-E357913 [cTOS-24-P5]">
      <seq>agagacgctcctgaggaaagagaccctttaaggattttctatgaatccttgtatcagcaagtgccagaaagtgaactagcagctatttggatgatggagtcaggtttgcttccaaaggacttggcgaagaaagtttttgagaagaaacaaaagaaggcccagcagctaaagcttggttcacctctgaaaacggttgtgactgtgaaaaagaccacggagtctgttactattaagaagacaacatcctcgtcaaccacgccatcaacacagaaaaagaaaacaccagattctggaaaaacggaatcaatgcagcggtcaaagaaacggaagcttaaggatgattcttctgaagaagactcagatgatggtttcattgcaactcttaaaagcacaaagagacagaaagcctcttgatgtttctaatggcttagtgaaattgtagatgagaaattaaatactctgttacatgcatttcaatttctccattatgtaaaagttgacctttgttctctcattttctccattgtgtttttccaggctctaaactttgaatacaattaaaaaaaaatgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="64540" stop="61538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64240" g_stop="64223" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64222" i_stop="64143" i_length="80">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64142" g_stop="64072" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="89" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64071" i_stop="62321" i_length="1751">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62320" g_stop="61839" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="571" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="572" polyA_stop="586"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E357913" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64240" e_stop="64223"/>
          <exon e_start="64142" e_stop="64072"/>
          <exon e_start="62320" e_stop="61839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGACGCTCCTGAGGAAGTATGTTCCAAATTTGCATGTTAAAAAAAACATTTTTTATGGTTTCAATCTGATCTAATGTTATATTTTTTGATTTTCAGAGAGACCCTTTAAGGATTTTCTATGAATCCTTGTATCAGCAAGTGCCAGAAAGTGAACTAGCAGCTATTTGGTATAACATTCTACCTTTTAAATGATTTTGAATAAGTTATTCTTGGGTAACTCTCTTGTCGTTAGTGTTTTTGAGTATCGTGATGAAGCTGTCTCTATCTTCTTTGAGTTGGTGTTGGTTGAAAAAAATGAACCTTGAATATTATTATGTTCTTAAAGGTCAAATTTTGTTCTTGTCCTAACAGTGTGTGTGTTATCCACCTGGTTGATGCTTCTGTATTAGCTCATGCTTTCATTTAGCGTTCACTTTGTCGAATGAGTAACTATTCTTAGTCTAGTTGTTTAGATGTGTTCATTTTCAAACTGAAAGAAGAGTAGGGGTAAGAAACTTCTGTTTGTATCTGGGTGCCCCTTAGATGCATAGTGTATTTTTGCGTATTGTACAACAGATAGTGAAATATGAGGTGTGTTGCTTGAATGTCAACGTGTGTGGAAGAGCAAGTTGGCTGGAAACAGCTAAAGAAAGCTTGTGAAGTAAGCAGTTCTATGTGAAAAGAATAGCCCACACTCGTAAACTTATATGTCATTTTTTCGTCCCTTTTTTTTTAGTAAAGAAGCATCAGCATGATAGAAGTTGCATGCCTACAACTGAGATGCTTAGTGAAGTTGCTAATTGAGTAAGTATCCATTGGACAAGGAAATCTGTATCTTGACTTGGCCCTTTTCGCCCAGTTAAGTACAATACATATTTGGCCACCTTAGTCGTAATCTAAGAGGTTAAGCTTACTATGATCATCTAATGCGCTACTTTAGATTTGTTATAGGAAAAAATCTACTTTAGTTTGAATCTGCAGAAATCATCTTTCAAGTGTTTATTTGAACATAAGAAAAAATGAAATTATAAGTATATAAGCTTTGTTATAACTTCATTAAAACTTCCGTCTGGAATGAGAAAATGGATTGTTTCAACCCTTTGACACTATATGATGAGTTCAGCTGACTTCTGACTGAAATTGTGACATATCTAAGGTGAAAACTTTTCTGGTAGTGCATTTTTCCACTTATTGACTATGGTTTGATATCATCCTTATGCAAAGCACTGTGTCCCTGGGCACAAGCTTTTACATTGAGTGCTTGGGGGATTAAGTTAAAGTTGTCACCAAGAATAGTTTGTGATACTAATGAGTGTTGTTAGTGGTTATAATGCAAATTAATATGCGTGTCTGAAGCTTAAGATGTGAGTTTAGACTGTTTAGTCAGCTCATTTGACATGATTTTGATGAAATATTGGTGCAATTACTTCAACCAAAATCCCAGGGCTTACTTATGACTGTTCTGTTGCAGCACATGCGATGAAACTATTTAGCCCATTCTTTGCATTATCGTGCTTAGACGTCACTCAATTTCTTGAGATCTGCTGTGGATTGATGCTAAAAACTATGTCTAATGTTGCTCATCTAATCCCTGATACAAATTGTCACTCTTCCCTTTCTGTCTCACTAAATCCACCCCGATCACCAAACAAGCATTAGAACTAACATAAATTGAAGTAGTTTCTCTAATGAATTTGGCAGCTGTCTCAGTCTATAAATGTTAATAAAGCTGGCCAAACAATGTCTATGCATGAATGGTTCCTCCTCATCAACCCTTTTGACCATCACTGATGCTACAGAAAGGATCTCGATGGATCAAAATGTCTGCTTGCAACTGTTAACAACCAAATCCAGAGTTGTTCATGATGATTATAAAAACTACAACTGTCCCTTGCAGTTGGATTCAAGTAATCATATCCTGATACTGTTGTTCTTGCAGGATGATGGAGTCAGGTTTGCTTCCAAAGGACTTGGCGAAGAAAGTTTTTGAGAAGAAACAAAAGAAGGCCCAGCAGCTAAAGCTTGGTTCACCTCTGAAAACGGTTGTGACTGTGAAAAAGACCACGGAGTCTGTTACTATTAAGAAGACAACATCCTCGTCAACCACGCCATCAACACAGAAAAAGAAAACACCAGATTCTGGAAAAACGGAATCAATGCAGCGGTCAAAGAAACGGAAGCTTAAGGATGATTCTTCTGAAGAAGACTCAGATGATGGTTTCATTGCAACTCTTAAAAGCACAAAGAGACAGAAAGCCTCTTGATGTTTCTAATGGCTTAGTGAAATTGTAGATGAGAAATTAAATACTCTGTTACATGCATTTCAATTTCTCCATTATGTAAAAGTTGACCTTTGTTCTCTCATTTTCTCCATTGTGTTTTTCCAGGCTCTAAACTTTGAATACAATTAAAAAAAAATGT</genome_strand>
        <mrna_strand>AGAGACGCTCCTGAGGAA................................................................................AGAGACCCTTTAAGGATTTTCTATGAATCCTTGTATCAGCAAGTGCCAGAAAGTGAACTAGCAGCTATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGGAGTCAGGTTTGCTTCCAAAGGACTTGGCGAAGAAAGTTTTTGAGAAGAAACAAAAGAAGGCCCAGCAGCTAAAGCTTGGTTCACCTCTGAAAACGGTTGTGACTGTGAAAAAGACCACGGAGTCTGTTACTATTAAGAAGACAACATCCTCGTCAACCACGCCATCAACACAGAAAAAGAAAACACCAGATTCTGGAAAAACGGAATCAATGCAGCGGTCAAAGAAACGGAAGCTTAAGGATGATTCTTCTGAAGAAGACTCAGATGATGGTTTCATTGCAACTCTTAAAAGCACAAAGAGACAGAAAGCCTCTTGATGTTTCTAATGGCTTAGTGAAATTGTAGATGAGAAATTAAATACTCTGTTACATGCATTTCAATTTCTCCATTATGTAAAAGTTGACCTTTGTTCTCTCATTTTCTCCATTGTGTTTTTCCAGGCTCTAAACTTTGAATACAATTAAAAAAAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312950" ref_strand="+" ref_description="SGN-E312950 [cTOA-14-K17]">
      <seq>ggttgtaaagaaagaggaagaggataagaagaaaggaaccaaaaatggagacaccgttgtgaagaagaaggaaaagaaagtttatgatttgcctggacagaagagagacgctcctgaggaaagagaccctttaaggattttctatgaatccttgtatcagcaagtgccagaaagtgaactagcagctatttggatgatggagtcaggtttgcttccaaaggacttggcgaagaaagtttttgagaagaaacaaaagaaggcccagcagctaaagcttggttcacctctgaaaacggttgtgactgtgaaaaagaccacggagtctgttactattaagaagacaacatcctcgtcaaccacgccatcaacacagaaaaagaaaacaccagattctggaaaaacggaatcaatgcagcggtcaaagaaacggaagcttaaggatgattcttctgaagaagactcagatgatggtttcattgcaactcttaaaagcacaaagagacagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="64642" stop="61706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64343" g_stop="64223" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64222" i_stop="64143" i_length="80">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64142" g_stop="64072" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="192" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64071" i_stop="62321" i_length="1751">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62320" g_stop="62006" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="507" r_length="315" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E312950" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64343" e_stop="64223"/>
          <exon e_start="64142" e_stop="64072"/>
          <exon e_start="62320" e_stop="62006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTAAAGAAAGAGGAAGAGGATAAGAAGAAAGGAACCAAAAATGGAGACACCGTTGTGAAGAAGAAGGAAAAGAAAGTTTATGATTTGCCTGGACAGAAGAGAGACGCTCCTGAGGAAGTATGTTCCAAATTTGCATGTTAAAAAAAACATTTTTTATGGTTTCAATCTGATCTAATGTTATATTTTTTGATTTTCAGAGAGACCCTTTAAGGATTTTCTATGAATCCTTGTATCAGCAAGTGCCAGAAAGTGAACTAGCAGCTATTTGGTATAACATTCTACCTTTTAAATGATTTTGAATAAGTTATTCTTGGGTAACTCTCTTGTCGTTAGTGTTTTTGAGTATCGTGATGAAGCTGTCTCTATCTTCTTTGAGTTGGTGTTGGTTGAAAAAAATGAACCTTGAATATTATTATGTTCTTAAAGGTCAAATTTTGTTCTTGTCCTAACAGTGTGTGTGTTATCCACCTGGTTGATGCTTCTGTATTAGCTCATGCTTTCATTTAGCGTTCACTTTGTCGAATGAGTAACTATTCTTAGTCTAGTTGTTTAGATGTGTTCATTTTCAAACTGAAAGAAGAGTAGGGGTAAGAAACTTCTGTTTGTATCTGGGTGCCCCTTAGATGCATAGTGTATTTTTGCGTATTGTACAACAGATAGTGAAATATGAGGTGTGTTGCTTGAATGTCAACGTGTGTGGAAGAGCAAGTTGGCTGGAAACAGCTAAAGAAAGCTTGTGAAGTAAGCAGTTCTATGTGAAAAGAATAGCCCACACTCGTAAACTTATATGTCATTTTTTCGTCCCTTTTTTTTTAGTAAAGAAGCATCAGCATGATAGAAGTTGCATGCCTACAACTGAGATGCTTAGTGAAGTTGCTAATTGAGTAAGTATCCATTGGACAAGGAAATCTGTATCTTGACTTGGCCCTTTTCGCCCAGTTAAGTACAATACATATTTGGCCACCTTAGTCGTAATCTAAGAGGTTAAGCTTACTATGATCATCTAATGCGCTACTTTAGATTTGTTATAGGAAAAAATCTACTTTAGTTTGAATCTGCAGAAATCATCTTTCAAGTGTTTATTTGAACATAAGAAAAAATGAAATTATAAGTATATAAGCTTTGTTATAACTTCATTAAAACTTCCGTCTGGAATGAGAAAATGGATTGTTTCAACCCTTTGACACTATATGATGAGTTCAGCTGACTTCTGACTGAAATTGTGACATATCTAAGGTGAAAACTTTTCTGGTAGTGCATTTTTCCACTTATTGACTATGGTTTGATATCATCCTTATGCAAAGCACTGTGTCCCTGGGCACAAGCTTTTACATTGAGTGCTTGGGGGATTAAGTTAAAGTTGTCACCAAGAATAGTTTGTGATACTAATGAGTGTTGTTAGTGGTTATAATGCAAATTAATATGCGTGTCTGAAGCTTAAGATGTGAGTTTAGACTGTTTAGTCAGCTCATTTGACATGATTTTGATGAAATATTGGTGCAATTACTTCAACCAAAATCCCAGGGCTTACTTATGACTGTTCTGTTGCAGCACATGCGATGAAACTATTTAGCCCATTCTTTGCATTATCGTGCTTAGACGTCACTCAATTTCTTGAGATCTGCTGTGGATTGATGCTAAAAACTATGTCTAATGTTGCTCATCTAATCCCTGATACAAATTGTCACTCTTCCCTTTCTGTCTCACTAAATCCACCCCGATCACCAAACAAGCATTAGAACTAACATAAATTGAAGTAGTTTCTCTAATGAATTTGGCAGCTGTCTCAGTCTATAAATGTTAATAAAGCTGGCCAAACAATGTCTATGCATGAATGGTTCCTCCTCATCAACCCTTTTGACCATCACTGATGCTACAGAAAGGATCTCGATGGATCAAAATGTCTGCTTGCAACTGTTAACAACCAAATCCAGAGTTGTTCATGATGATTATAAAAACTACAACTGTCCCTTGCAGTTGGATTCAAGTAATCATATCCTGATACTGTTGTTCTTGCAGGATGATGGAGTCAGGTTTGCTTCCAAAGGACTTGGCGAAGAAAGTTTTTGAGAAGAAACAAAAGAAGGCCCAGCAGCTAAAGCTTGGTTCACCTCTGAAAACGGTTGTGACTGTGAAAAAGACCACGGAGTCTGTTACTATTAAGAAGACAACATCCTCGTCAACCACGCCATCAACACAGAAAAAGAAAACACCAGATTCTGGAAAAACGGAATCAATGCAGCGGTCAAAGAAACGGAAGCTTAAGGATGATTCTTCTGAAGAAGACTCAGATGATGGTTTCATTGCAACTCTTAAAAGCACAAAGAGACAGAA</genome_strand>
        <mrna_strand>GGTTGTAAAGAAAGAGGAAGAGGATAAGAAGAAAGGAACCAAAAATGGAGACACCGTTGTGAAGAAGAAGGAAAAGAAAGTTTATGATTTGCCTGGACAGAAGAGAGACGCTCCTGAGGAA................................................................................AGAGACCCTTTAAGGATTTTCTATGAATCCTTGTATCAGCAAGTGCCAGAAAGTGAACTAGCAGCTATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGGAGTCAGGTTTGCTTCCAAAGGACTTGGCGAAGAAAGTTTTTGAGAAGAAACAAAAGAAGGCCCAGCAGCTAAAGCTTGGTTCACCTCTGAAAACGGTTGTGACTGTGAAAAAGACCACGGAGTCTGTTACTATTAAGAAGACAACATCCTCGTCAACCACGCCATCAACACAGAAAAAGAAAACACCAGATTCTGGAAAAACGGAATCAATGCAGCGGTCAAAGAAACGGAAGCTTAAGGATGATTCTTCTGAAGAAGACTCAGATGATGGTTTCATTGCAACTCTTAAAAGCACAAAGAGACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392665" ref_strand="-" ref_description="SGN-E392665 [TUS-36-F23](-)">
      <seq>cgattgggtaccgggccccccccttcacacttcacatttttacagctgattttttcgaattgaatcctgaaaatgtcgtctgaagactcaaagccagtgaggaaagtggaaagtgacgacggagaaagcattgggtctctttttaacagcaaaaagaaacctaacaataatgccgcttcaaaatctcagcctctcaaaaaagctaagattaagaaagaagaaaaagatgatgatttcgaagaacccatttcgaaaaagagtccaaaaattgttaagcccaagaaggaagaaccttcacccgtgtcaaagaaaagttcgagtagaactgataaaaaagttgtaaagaaagaggaagaggataagaagaaaggaaccaaaaatggagacaccgttgtgaagaagaaggaaaagaaagtttatgatttgcctggacagaagagagacgctcctgaggaaagagaccctttaaggattttctatgaatccttgtatcagcaagtgccagaaagtgaactagcagctatttggatgatggagtcaggtttgcttccaaaggacttggcgaagaaagtttttgagaagaaacaaaagaaggcccagcagctaaagcttggttcacctctgaaaacggttgtgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="65037" stop="61908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64736" g_stop="64425" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="333" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64424" i_stop="64346" i_length="79">
            <donor d_prob="0.467" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64345" g_stop="64223" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="456" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64222" i_stop="64143" i_length="80">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64142" g_stop="64072" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="527" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64071" i_stop="62321" i_length="1751">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62320" g_stop="62208" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="640" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E392665" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392665" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64736" e_stop="64425"/>
          <exon e_start="64345" e_stop="64223"/>
          <exon e_start="64142" e_stop="64072"/>
          <exon e_start="62320" e_stop="62208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCACACTTCACATTTTTACAGCTGATTTTTTCGAATTGAATCCTGAAAATGTCGTCTGAAGACTCAAAGCCAGTGAGGAAAGTGGAAAGTGACGACGGAGAAAGCATTGGGTCTCTTTTTAACAGCAAAAAGAAACCTAACAATAATGCCGCTTCAAAATCTCAGCCTCTCAAAAAAGCTAAGATTAAGAAAGAAGAAAAAGATGATGATTTCGAAGAACCCATTTCGAAAAAGAGTCCAAAAATTGTTAAGCCCAAGAAGGAAGAACCTTCACCCGTGTCAAAGAAAAGTTCGAGTAGAACTGATAAAGTTGGTATTTTTATTTGTGCATTTTTTGTTATTTTACTGTTTGATTTGTTGGTTTTTTAATTGGGTTTTTTGTGTGTAGAAAGTTGTAAAGAAAGAGGAAGAGGATAAGAAGAAAGGAACCAAAAATGGAGACACCGTTGTGAAGAAGAAGGAAAAGAAAGTTTATGATTTGCCTGGACAGAAGAGAGACGCTCCTGAGGAAGTATGTTCCAAATTTGCATGTTAAAAAAAACATTTTTTATGGTTTCAATCTGATCTAATGTTATATTTTTTGATTTTCAGAGAGACCCTTTAAGGATTTTCTATGAATCCTTGTATCAGCAAGTGCCAGAAAGTGAACTAGCAGCTATTTGGTATAACATTCTACCTTTTAAATGATTTTGAATAAGTTATTCTTGGGTAACTCTCTTGTCGTTAGTGTTTTTGAGTATCGTGATGAAGCTGTCTCTATCTTCTTTGAGTTGGTGTTGGTTGAAAAAAATGAACCTTGAATATTATTATGTTCTTAAAGGTCAAATTTTGTTCTTGTCCTAACAGTGTGTGTGTTATCCACCTGGTTGATGCTTCTGTATTAGCTCATGCTTTCATTTAGCGTTCACTTTGTCGAATGAGTAACTATTCTTAGTCTAGTTGTTTAGATGTGTTCATTTTCAAACTGAAAGAAGAGTAGGGGTAAGAAACTTCTGTTTGTATCTGGGTGCCCCTTAGATGCATAGTGTATTTTTGCGTATTGTACAACAGATAGTGAAATATGAGGTGTGTTGCTTGAATGTCAACGTGTGTGGAAGAGCAAGTTGGCTGGAAACAGCTAAAGAAAGCTTGTGAAGTAAGCAGTTCTATGTGAAAAGAATAGCCCACACTCGTAAACTTATATGTCATTTTTTCGTCCCTTTTTTTTTAGTAAAGAAGCATCAGCATGATAGAAGTTGCATGCCTACAACTGAGATGCTTAGTGAAGTTGCTAATTGAGTAAGTATCCATTGGACAAGGAAATCTGTATCTTGACTTGGCCCTTTTCGCCCAGTTAAGTACAATACATATTTGGCCACCTTAGTCGTAATCTAAGAGGTTAAGCTTACTATGATCATCTAATGCGCTACTTTAGATTTGTTATAGGAAAAAATCTACTTTAGTTTGAATCTGCAGAAATCATCTTTCAAGTGTTTATTTGAACATAAGAAAAAATGAAATTATAAGTATATAAGCTTTGTTATAACTTCATTAAAACTTCCGTCTGGAATGAGAAAATGGATTGTTTCAACCCTTTGACACTATATGATGAGTTCAGCTGACTTCTGACTGAAATTGTGACATATCTAAGGTGAAAACTTTTCTGGTAGTGCATTTTTCCACTTATTGACTATGGTTTGATATCATCCTTATGCAAAGCACTGTGTCCCTGGGCACAAGCTTTTACATTGAGTGCTTGGGGGATTAAGTTAAAGTTGTCACCAAGAATAGTTTGTGATACTAATGAGTGTTGTTAGTGGTTATAATGCAAATTAATATGCGTGTCTGAAGCTTAAGATGTGAGTTTAGACTGTTTAGTCAGCTCATTTGACATGATTTTGATGAAATATTGGTGCAATTACTTCAACCAAAATCCCAGGGCTTACTTATGACTGTTCTGTTGCAGCACATGCGATGAAACTATTTAGCCCATTCTTTGCATTATCGTGCTTAGACGTCACTCAATTTCTTGAGATCTGCTGTGGATTGATGCTAAAAACTATGTCTAATGTTGCTCATCTAATCCCTGATACAAATTGTCACTCTTCCCTTTCTGTCTCACTAAATCCACCCCGATCACCAAACAAGCATTAGAACTAACATAAATTGAAGTAGTTTCTCTAATGAATTTGGCAGCTGTCTCAGTCTATAAATGTTAATAAAGCTGGCCAAACAATGTCTATGCATGAATGGTTCCTCCTCATCAACCCTTTTGACCATCACTGATGCTACAGAAAGGATCTCGATGGATCAAAATGTCTGCTTGCAACTGTTAACAACCAAATCCAGAGTTGTTCATGATGATTATAAAAACTACAACTGTCCCTTGCAGTTGGATTCAAGTAATCATATCCTGATACTGTTGTTCTTGCAGGATGATGGAGTCAGGTTTGCTTCCAAAGGACTTGGCGAAGAAAGTTTTTGAGAAGAAACAAAAGAAGGCCCAGCAGCTAAAGCTTGGTTCACCTCTGAAAACGGTTGTGACTG</genome_strand>
        <mrna_strand>CCTTCACACTTCACATTTTTACAGCTGATTTTTTCGAATTGAATCCTGAAAATGTCGTCTGAAGACTCAAAGCCAGTGAGGAAAGTGGAAAGTGACGACGGAGAAAGCATTGGGTCTCTTTTTAACAGCAAAAAGAAACCTAACAATAATGCCGCTTCAAAATCTCAGCCTCTCAAAAAAGCTAAGATTAAGAAAGAAGAAAAAGATGATGATTTCGAAGAACCCATTTCGAAAAAGAGTCCAAAAATTGTTAAGCCCAAGAAGGAAGAACCTTCACCCGTGTCAAAGAAAAGTTCGAGTAGAACTGATAAA...............................................................................AAAGTTGTAAAGAAAGAGGAAGAGGATAAGAAGAAAGGAACCAAAAATGGAGACACCGTTGTGAAGAAGAAGGAAAAGAAAGTTTATGATTTGCCTGGACAGAAGAGAGACGCTCCTGAGGAA................................................................................AGAGACCCTTTAAGGATTTTCTATGAATCCTTGTATCAGCAAGTGCCAGAAAGTGAACTAGCAGCTATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGGAGTCAGGTTTGCTTCCAAAGGACTTGGCGAAGAAAGTTTTTGAGAAGAAACAAAAGAAGGCCCAGCAGCTAAAGCTTGGTTCACCTCTGAAAACGGTTGTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340707" ref_strand="+" ref_description="SGN-E340707 [cTOF-1-J14]">
      <seq>tccattgcgctctctctctttcaaactctaaaagtttcttcaatctgcaatggcgaagtccaaaaaaccaaaaaattcttgcgatagagaaaaatggaacaaagtgttcaatgctttatttcacatgttgacatcacagcagacgcagcttgaatcccttgcacaagagagaatgattcttgaagatcggataaaattacagaatgatcgatgggtatctgatattcatagatttcaagaacaaatttatgagatgaggaaaaactttacaattcaagagatggagcgcatgcttgaagttgcgaaatcggagtttgttgttggtttgaagcaacgagatgttgccgtgttccaaagaaagctcgaaaatgccgatggagaactggctgacttgagagaatggtttgactacctctctcagagatgctctgagccaaatgatgtaccaaatgctgcaacaaatgaaaagtccgatacaagaaagaatgcttgggaagatgaggtgaggaggcttaaaacagaaaatgagaagcttacttcagagaaaaattctgagatttctgccctcttggcagaatataatcttattaggaaccagatcaacaaactggggcacgacatgactgagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="73441" stop="70473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73141" g_stop="72889" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72888" i_stop="72784" i_length="105">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72783" g_stop="72672" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="365" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72671" i_stop="71171" i_length="1501">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71170" g_stop="71097" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="439" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71096" i_stop="70966" i_length="131">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70965" g_stop="70773" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="632" r_length="193" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E340707" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73141" e_stop="72889"/>
          <exon e_start="72783" e_stop="72672"/>
          <exon e_start="71170" e_stop="71097"/>
          <exon e_start="70965" e_stop="70773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTGCGCTCTCTCTCTTTCAAACTCTAAAAGTTTCTTCAATCTGCAATGGCGAAGTCCAAAAAACCAAAAAATTCTTCCGATAGAGAAAAATGGAACAAAGTGTTCAATGCTTTAGTTCACATGTTGACATCACAGCAGACGCAGCTTGAATCCCTTGCAAAAGAGAGAATGATTCTTGAAGATCGGATAAAATTACAGAATGATCGATGGGTATCTGATATTCATAGATTTCAAGAACAAATTTATGAGGTTACTTTGATTTTCTTCTTGAATTTTGCATTTTTACTTATTTAGGGTTTTGATTGCTTGGAATTTTAGGGCTTTTGATTAAATTGGGTTCTTTTGCGTTTGCAGATGAGGAAAAACTTTACAATTCAAGAGATGGAGCGCATGCTTGAGGTTGCGAAATCGGAGTTTGTTGTTGGTTTGAAGCAACGAGATGTTGCCGTGTTCCAAAGAAAGCTCGGTGAGTTTATATTTGAAAAAGAAAAGAACTTTTTCTTGCCCTAAGCTTTGTTTGGTTTATACGAAATGATGGAAATTTGAGCAAATTGTGGACCTTTACTTGCCTTGCTGTTTATTTCCCGACTCGTTGAGTTTAAAATCAGGTAGGAAGTAGAGATTTCTTATTGCTATGCACAGGGACAGAGCCTGGTGGGAGCAAGGGGATTTATGCATATATAGCTCAGTAAATATTTTGGCTCCGCCACTAGCTATGTAGAGTTCAAAGACGATAAATATTAACTTTGAAGTTGTCCTTCTCTTCTCTTTCTTTACCTGATAAGGATGGTACTATTCATGATTACTGCCTTTGATAACTTTTATGAGCCTTATTTTGTGCTGGGGTGTCGCCACAAAGTACAGTGTCACTGCCTAAACAATATTGCTGTTTAAGATAATCAATTTGATAGTGGAGCTTGAAGTCTTGAACATACAATATCTTTTTCTTACTCAATATGGTTCTCTCAATATACTTTTATGAATCCAACCATGAATAAAGTTGCATAATTTATTTTCTTTTGATAGCTTAGAAATCTTCAAGGGCTAGTGGCACTCGTGTTAGTTAAATTGGGAGGGAATTGAAACAGTTATCTGTTACGTCTAGTGGCGCACGTGTCATATTAGTTGGAACGGAGTAGAAACAGTTACATGTCAGGGTTTCTATTAATCCACCCCATTTCCCATTAGATAAGTTAAATTCTTTCAATACACTTTTACGAACTTAATACTGAAATAAAGTACATCATAGCACTTCATTCAGTTTGGAGAAGTTTATAAAAGTCCTAAGGAAGCAGAATGGCATACAGTTCCCTGATTATATGCTAACTTTCTCCTTCTACAGACCTTGGAACAAGAGAAGGAAAAAGAATCTTGAACAGAGAAGATATGGTCTTTTATAGCGTTCGTGCTTTTTTTCCTGTCATCTGAGGAGTGAGGGAGGGAAGGAAAGAAGGAAGGAGAAAATAAAGGGAAGAGACCTCAGGGTGGTTTTTTTGGACATGAGTGGCTGAACTTTAATTCCGAGACTGAATAAAGGGCATGTTACCTCTTTTTTTTCCTCTAGTTGACTCACTTTCTCCAACTCACTCAATTTCACTTGTACACATTTCAACTCTTGTTCTAAAATTCTCTTTGCATCTCAGCTCAGGGCACACTGATATTTCTTTTCGTGCATCTTCAAGATTGTCAAAGTGGATCATTTAAATTAGCAATAATGGAGTTTCTGTGTGTAATCAAAAAATTATGCAACCACATATCCTCTACACACTCGAACACACTTCTTTATGTATAAAGTTATCAGTTCAGTTTTTATTGCAAGAGGCTATTTTAGACTTTCTTGCTCTTGAAAGATGGCTCCCCATCCCAGTGTATCAGTAGCCTTTATTGTTCAAGGATAGACATGATCTCTTAAGTTATATCATCCCAGCATTCAATTTGGTTACTTACTATTCACCTAAAAAGTGCAGAAAATGCAGATGGTGAACTGGCTGACTTCAGAGAATGGTTTGACTACCTCTCTCAGAGATGCTCTGAGCCAAATGTATGTTGTTTCAATTGCCTTTTCTATTATGAATGTTGTTTCTCATCGCCTTTCTGAGTTTTTAGTTTATTATTTGCGCTAGTAATAAAAAACTAGAAGATGAGATGTATGAATGTTCATTTGATCCACAGGATGTACCAAATGCTGCAACAAATGAAAAGTCGGAGACAAGAAAGAAGGCTTGGGAAGATGAGGTGAGGAGGCTTAAAACAGAAAATGAGAAGCTTACTTCAGAGAAAAATTCTGAGATTTCTGCCCTCTTGGCAGAAAAGAATTTTATTTGGAACCAGTTCAACAAACTGGAGCACGACATGACTGAGCAAT</genome_strand>
        <mrna_strand>TCCATTGCGCTCTCTCTCTTTCAAACTCTAAAAGTTTCTTCAATCTGCAATGGCGAAGTCCAAAAAACCAAAAAATTCTTGCGATAGAGAAAAATGGAACAAAGTGTTCAATGCTTTATTTCACATGTTGACATCACAGCAGACGCAGCTTGAATCCCTTGCACAAGAGAGAATGATTCTTGAAGATCGGATAAAATTACAGAATGATCGATGGGTATCTGATATTCATAGATTTCAAGAACAAATTTATGAG.........................................................................................................ATGAGGAAAAACTTTACAATTCAAGAGATGGAGCGCATGCTTGAAGTTGCGAAATCGGAGTTTGTTGTTGGTTTGAAGCAACGAGATGTTGCCGTGTTCCAAAGAAAGCTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGCCGATGGAGAACTGGCTGACTTGAGAGAATGGTTTGACTACCTCTCTCAGAGATGCTCTGAGCCAAAT...................................................................................................................................GATGTACCAAATGCTGCAACAAATGAAAAGTCCGATACAAGAAAGAATGCTTGGGAAGATGAGGTGAGGAGGCTTAAAACAGAAAATGAGAAGCTTACTTCAGAGAAAAATTCTGAGATTTCTGCCCTCTTGGCAGAATATAATCTTATTAGGAACCAGATCAACAAACTGGGGCACGACATGACTGAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461901" ref_strand="+" ref_description="SGN-E461901 [cPRO-9-P2]">
      <seq>ctccattgcgctctctttctctttcaaactctaaaaaattcttcaatctgcaatggcgaagtccaaaaaaccaaaaaattcttcggatagagaaaaatggaacaaagtgttcaacgctttagttcacatgttgaaatcacagcagacgcagcttgaatcccttgcaaaagagagaatgatacttgaagatcggataaaattacagaatgatcgatgggtatctgatattgatagatttcaagaacaaatttatgagatgaggaaagaatttacaattcaagagatggagcgcatgcttgaggttgcgaaatctgagttcgttgttggtttgaagcaacgagatgttgccgtgttccaaagaaagttcgaaaatgcagatagtgaactggctgacttcagagaatggtttgactacctctctcagaaatgctctgaaccaaatgatgtaccaagggctgcaacaaatgaaaagtcagagacaagaaaaaaggcatgggaagatgatgtgagaaggcttaaaacagaaaatgagaagcttacttcagaagaaaattctgagatatctgccctcttggcagaaaaggattttatttggaaccagtttcacaaactggagcacgacatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="73442" stop="70481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73142" g_stop="72889" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72888" i_stop="72784" i_length="105">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72783" g_stop="72672" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="368" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72671" i_stop="71171" i_length="1501">
            <donor d_prob="0.890" d_score="0.96"/>
            <acceptor a_prob="0.899" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71170" g_stop="71097" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="442" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71096" i_stop="70966" i_length="131">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70965" g_stop="70781" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="627" r_length="185" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E461901" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73142" e_stop="72889"/>
          <exon e_start="72783" e_stop="72672"/>
          <exon e_start="71170" e_stop="71097"/>
          <exon e_start="70965" e_stop="70781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATTGCGCTCTC-T-CTCTTTCAAACTCTAAAAGTTTCTTCAATCTGCAATGGCGAAGTCCAAAAAACCAAAAAATTCTTCCGATAGAGAAAAATGGAACAAAGTGTTCAATGCTTTAGTTCACATGTTGACATCACAGCAGACGCAGCTTGAATCCCTTGCAAAAGAGAGAATGATTCTTGAAGATCGGATAAAATTACAGAATGATCGATGGGTATCTGATATTCATAGATTTCAAGAACAAATTTATGAGGTTACTTTGATTTTCTTCTTGAATTTTGCATTTTTACTTATTTAGGGTTTTGATTGCTTGGAATTTTAGGGCTTTTGATTAAATTGGGTTCTTTTGCGTTTGCAGATGAGGAAAAACTTTACAATTCAAGAGATGGAGCGCATGCTTGAGGTTGCGAAATCGGAGTTTGTTGTTGGTTTGAAGCAACGAGATGTTGCCGTGTTCCAAAGAAAGCTCGGTGAGTTTATATTTGAAAAAGAAAAGAACTTTTTCTTGCCCTAAGCTTTGTTTGGTTTATACGAAATGATGGAAATTTGAGCAAATTGTGGACCTTTACTTGCCTTGCTGTTTATTTCCCGACTCGTTGAGTTTAAAATCAGGTAGGAAGTAGAGATTTCTTATTGCTATGCACAGGGACAGAGCCTGGTGGGAGCAAGGGGATTTATGCATATATAGCTCAGTAAATATTTTGGCTCCGCCACTAGCTATGTAGAGTTCAAAGACGATAAATATTAACTTTGAAGTTGTCCTTCTCTTCTCTTTCTTTACCTGATAAGGATGGTACTATTCATGATTACTGCCTTTGATAACTTTTATGAGCCTTATTTTGTGCTGGGGTGTCGCCACAAAGTACAGTGTCACTGCCTAAACAATATTGCTGTTTAAGATAATCAATTTGATAGTGGAGCTTGAAGTCTTGAACATACAATATCTTTTTCTTACTCAATATGGTTCTCTCAATATACTTTTATGAATCCAACCATGAATAAAGTTGCATAATTTATTTTCTTTTGATAGCTTAGAAATCTTCAAGGGCTAGTGGCACTCGTGTTAGTTAAATTGGGAGGGAATTGAAACAGTTATCTGTTACGTCTAGTGGCGCACGTGTCATATTAGTTGGAACGGAGTAGAAACAGTTACATGTCAGGGTTTCTATTAATCCACCCCATTTCCCATTAGATAAGTTAAATTCTTTCAATACACTTTTACGAACTTAATACTGAAATAAAGTACATCATAGCACTTCATTCAGTTTGGAGAAGTTTATAAAAGTCCTAAGGAAGCAGAATGGCATACAGTTCCCTGATTATATGCTAACTTTCTCCTTCTACAGACCTTGGAACAAGAGAAGGAAAAAGAATCTTGAACAGAGAAGATATGGTCTTTTATAGCGTTCGTGCTTTTTTTCCTGTCATCTGAGGAGTGAGGGAGGGAAGGAAAGAAGGAAGGAGAAAATAAAGGGAAGAGACCTCAGGGTGGTTTTTTTGGACATGAGTGGCTGAACTTTAATTCCGAGACTGAATAAAGGGCATGTTACCTCTTTTTTTTCCTCTAGTTGACTCACTTTCTCCAACTCACTCAATTTCACTTGTACACATTTCAACTCTTGTTCTAAAATTCTCTTTGCATCTCAGCTCAGGGCACACTGATATTTCTTTTCGTGCATCTTCAAGATTGTCAAAGTGGATCATTTAAATTAGCAATAATGGAGTTTCTGTGTGTAATCAAAAAATTATGCAACCACATATCCTCTACACACTCGAACACACTTCTTTATGTATAAAGTTATCAGTTCAGTTTTTATTGCAAGAGGCTATTTTAGACTTTCTTGCTCTTGAAAGATGGCTCCCCATCCCAGTGTATCAGTAGCCTTTATTGTTCAAGGATAGACATGATCTCTTAAGTTATATCATCCCAGCATTCAATTTGGTTACTTACTATTCACCTAAAAAGTGCAGAAAATGCAGATGGTGAACTGGCTGACTTCAGAGAATGGTTTGACTACCTCTCTCAGAGATGCTCTGAGCCAAATGTATGTTGTTTCAATTGCCTTTTCTATTATGAATGTTGTTTCTCATCGCCTTTCTGAGTTTTTAGTTTATTATTTGCGCTAGTAATAAAAAACTAGAAGATGAGATGTATGAATGTTCATTTGATCCACAGGATGTACCAAATGCTGCAACAAATGAAAAGTCGGAGACAAGAAAGAAGGCTTGGGAAGATGAGGTGAGGAGGCTTAAAACAGAAAATGAGAAGCTTACTTCAGAGAAAAATTCTGAGATTTCTGCCCTCTTGGCAGAAAAGAATTTTATTTGGAACCAGTTCAACAAACTGGAGCACGACATGAC</genome_strand>
        <mrna_strand>CTCCATTGCGCTCTCTTTCTCTTTCAAACTCTAAAAAATTCTTCAATCTGCAATGGCGAAGTCCAAAAAACCAAAAAATTCTTCGGATAGAGAAAAATGGAACAAAGTGTTCAACGCTTTAGTTCACATGTTGAAATCACAGCAGACGCAGCTTGAATCCCTTGCAAAAGAGAGAATGATACTTGAAGATCGGATAAAATTACAGAATGATCGATGGGTATCTGATATTGATAGATTTCAAGAACAAATTTATGAG.........................................................................................................ATGAGGAAAGAATTTACAATTCAAGAGATGGAGCGCATGCTTGAGGTTGCGAAATCTGAGTTCGTTGTTGGTTTGAAGCAACGAGATGTTGCCGTGTTCCAAAGAAAGTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGCAGATAGTGAACTGGCTGACTTCAGAGAATGGTTTGACTACCTCTCTCAGAAATGCTCTGAACCAAAT...................................................................................................................................GATGTACCAAGGGCTGCAACAAATGAAAAGTCAGAGACAAGAAAAAAGGCATGGGAAGATGATGTGAGAAGGCTTAAAACAGAAAATGAGAAGCTTACTTCAGAAGAAAATTCTGAGATATCTGCCCTCTTGGCAGAAAAGGATTTTATTTGGAACCAGTTTCACAAACTGGAGCACGACATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745830" ref_strand="+" ref_description="SGN-E745830 [GI|47105040]">
      <seq>ggatatttcatggttggtgtcttcctcggaaaccttagatctcactgaagttcgccgtagccgccgccgccgccgccgatactttgagatctttggattcgatttcttattgtctaggacttttggaagtattggaagatgcctagccctgtggatgtgtctcaaaatgggaatgcaagacacgcggaagctgctccatccttgtttgaaatcgaggaagatttggctagattgctggaaaggccaagacaagttaatattgaaaggaagaggtcgttcgatgaaagatctttcagcgaaatgtcaatgactcattcaccgccacgtcaggtatacaaaaattcggagaactcttctcgtgtttttgataatatggttggagtgtattcaccaggaaggtggtccggcatacacacacccagatcaaccttcggatatgagccgcatcctataatcggcgaagcatgggaagctttgaggcgttctattgttaacttccgagatcaacctgtgggaactattgctgctatagataattctgctgaggaacttaactatgatcaggtttttgtcagagattttgtccccagcgctttggcattcttgatgaatggtgaacctgatatagtaaagaattttcttttgaaaaccttgcgcctccaatctcgggagaagaagatagaccagttcaagttgggggatggagttatgcctgcaagttttaaagtgtctcatgatcctgttaggaactatgagactataactgctgatttcggtgaaagtgctattggtagagttgctcctgttgattcagggttctggtggattatactacttcgtgcatacacaaagtctacaggggacacttctttggctgagatgccagaatgccaaaggggtataaggctgattcttgaattatgtctctctgaaggttttgatacattcccaaccctgctgtgcgctgatggatgctctatgattgatcgcagaatgggtgtctatggctatcctattgaaatacaagcacttttctttatggccttaagatgtgccttgtttctccttaaacacgacgaagaaaaccaagagtgttgtgatgcaataattaaacgacttcatgctttaagctttcacatgagaagttactattggctcgacataaaacaactgaatgatatataccgctacaaaacagaagagtactctcacactgcagtaaacaagtttaatgtgatgccagattcccttccggagtgggtttttgatttcatgccaactcgtggtggttacttcatcggaaatgttagtcctgctcacatggacttccgttggttttgtttgggtaactgtatttcaatcttgtcatctttggctacacctgagcaagcttccgccataatggatctcgttgaatcaagatggcaagagctagttggagaaatgccgctgaaaatctgttatcctgctatggaaggccatgaatggagaattgtaacaggatgcgaccctaaaaacactagttggagttaccacaatggtggcacttggccagttcttctgtggctccttactgcagcagctatcaagactggtcgaccccaaatagcacgacgggccattgaactagctgaatcgcgtttactaaaagatagctggccagagtattatgacggaaagcttggtcgatttattggaaagcaggcgcgtaagttccagacatggtccattgctggttacttggtagctagaatgatgctggaagatccatctcatttgggtatgatatcacttgaagaagataaacagatgaagcctaccatgaaaagatctgcttcttggacttgttaatatccttgtacacaaattttctttcgaatgccatgctttttttctctctcttttttgcaattcgtaaacactctcttttagtttgtcgctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="75688" stop="80823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75987" g_stop="76074" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76075" i_stop="76726" i_length="652">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.522" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76727" g_stop="77202" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="564" r_length="476" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77203" i_stop="77924" i_length="722">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77925" g_stop="78356" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="996" r_length="432" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78357" i_stop="79190" i_length="834">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.661" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79191" g_stop="79749" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="997" r_stop="1555" r_length="559" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79750" i_stop="80134" i_length="385">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80135" g_stop="80522" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1556" r_stop="1944" r_length="389" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1945" polyA_stop="1956"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E745830" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1943</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75987" e_stop="76074"/>
          <exon e_start="76727" e_stop="77202"/>
          <exon e_start="77925" e_stop="78356"/>
          <exon e_start="79191" e_stop="79749"/>
          <exon e_start="80135" e_stop="80522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAGTTCATGGTTGGTGTCTTCCTCGGAAACCTTAGATCTCACTGAAGTTCGCCGTAGCCGCCGCCGCCGCCGCCGATACTTTGAGGTTGTTATTACCAGCTCCTAGGTTATTTATTTTGTGTTTTATCTATGTTTCTTAATTTTTTCATTTTTCTGTTTGTTTCGATGATATTAAGGTTTTTCTGCATTTGAGATTTTTCATTTTGTGCTGGTTTCAGTATTTGCTGGATTGATCAAAGTATGAATTAAAAAGAAAGAAGTAAATTGATAAAGTAAAAGAAGATCTAACAGTAGTTTGACTTTGATTGTTTAATTAAGTTAATGATTATGATTAATTAATTAAAATTGTGTGTAAGAACTTGCTCTAATTTTGCTCAAGTTGAATTAAACCAAACTTATAGTGAATAAATATTGCTTGTAAATGAAAAAAATGTTGATTTTCTGATCTGGTGTATATTTCAATTTAATGTATTCCAAGTATAAGAGGCATTAATTGCACTCTTTATTACAAGTTGATTGTATTCTTTATTATGTAAGTTCTTGTTTGATGTAGCTCGGACTCTCCAAAAATGTTGCTGCAGCCCATTGGATCCTCCAAAAGAGGAACCTTTCGGAGGATCCGACACACACTTGTTTGATGTTTTTGGAGAGTCTGAGCTATATAGCTTTGTGTTTACTAAGCTTCTGTTACGGGGGCGAATTCTTAAAAGTTTTCTTATTTCATTGGTGATATGCAGATCTTTGGATTCGATTTCTTATTGTCTAGGACTTTTGGAAGTATTGGAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACACGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCTAGATTGCTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGATAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAGCCGCATCCTATAATCGGCGAAGCATGGGAAGCTTTGAGGCGTTCTATTGTTAACTTCCGAGATCAACCTGTGGGAACTATTGCTGCTATAGATAATTCTGCTGAGGAACTTAACTATGATCAGGTAAATGCTTATTGTTCTAGTTCTTAGATGGATACAAGTTTGTCTTTATGTATTTTGTTGTGATTTAATATCCCGTGAAGCAGGTCGATTATGTGCTTCAATGGAACTTGTTTTGACGAGTGTCCTCTGATAAGTTGTACTAGATGTTTCTTTACGTAATAAATAGAAAATGGTGAATTCCTATGTCCACACTATAGTTATCAGTGCAACTGATTGGTTTGCGGTTGACTGATAAGATGAAGAGGGGGTATAGTTTGCAGGCCCAGCTATTTCAATGAATATGAGCTAAGCTTGACCGACTGAATTGTTCAAATAGTTTACATAAAAACTTATGTAGAACCAGTGTTGTCAAAGGCGCATTTAAGCCATGAAGCGGGACTCGAAATGTGTCTGAGCACTTTTTCTCGCTTATTGTGCATTCAGCGTCGTTAGCAAGGTTCTCTAAGGCATACTTATCATTGTGAATTAACCTCTTATGACGAGGCGGCACTAAACAATTGATATTTCACTTATTTGTTATTCATGCTTATTTGCGCTTAAAACCCCAATGAACCTTTGAGCGTTTTTGCGTCTGATCTAGAACCAGATTCTAGATATTCTCCAGAGGTAAAACCAGCTTACTGATGGGCCCAGCTTTCCGAAATCCTTTCACAGTCGTCTTTCTCTATGTACATGACAACCATTCTACTTGCAATTTGCAGTTCTGACTTAAAATTTGGCAGGTTTTTGTCAGAGATTTTGTCCCCAGCGCTTTGGCATTCTTGATGAATGGTGAACCTGATATAGTAAAGAATTTTCTTTTGAAAACCTTGCGCCTCCAATCTCGGGAGAAGAAGATAGACCAGTTCAAGTTGGGGGATGGAGTTATGCCTGCAAGTTTTAAAGTGTCTCATGATCCTGTTAGGAACTATGAGACTATAACTGCTGATTTCGGTGAAAGTGCTATTGGTAGAGTTGCTCCTGTTGATTCAGGGTTCTGGTGGATTATACTACTTCGTGCATACACAAAGTCTACAGGGGACACTTCTTTGGCTGAGATGCCAGAATGCCAAAGGGGTATAAGGCTGATTCTTGAATTATGTCTCTCTGAAGGTTTTGATACATTCCCAACCCTGCTGTGCGCTGATGGATGCTCTATGATTGATCGCAGAATGGTCAGTCTGATGTACTACTATCCGCTCTTTATCGGTTTTTTAAACTAGATCTGACTTATGCTCATGCCTTGTTTTCTGTTTATTACATGCTTGATTTTCTACTTAATATTACATGATGACAGTGATGACAAGATATGAGATAGCTATCAACTGTTACTTCTAGAATAGTATAATTGACCAAATGCATATTTATAATCTGTCAAGATTTGGTTAGCCTACATACTTATTACGTGCTTGATTTTCTATTTCTCGTACATAATGACAGTGATTCTGATTCTGACTTAGGTAAGTTAAGCTTCAAATAGGAGTTCTGCTGAGATTTCACATCATTTGCTTGAAGTTAAGAAATAGGCAGTTGAGCTTTGTCTTGCTTTTTGGCGGGATTAGGCTTGGTGGGAGTCTGGTAGCACTGTGTCTGTCTTAGTATTAGTCGTATACACGTACTTTCTTGCGTTTGACCATCTGTTTTCTATTGTGTTTCAGTTACCGCTTGATTTCGATGTGCTATGTAGTGCTTTCCTTATTAATTGACGTGTTTTCTTCACTGCTGTATCTCCTTTTTCATAACTTCTTTGATGTGCTGCACTTTGAGCTGAGGGTCTTTCGGAAACAACCTCTCTACCTCCACGATGTAGGGGTAAGGTCTGTGTATACACTACCCTCCTGAGACTCCACTTGTGGGATTACACTGGACCAATAAGAAGACTTGTACTCTTTTCTCATATTCTCAATAAATTTGTGGGCATATTAAAATTCTCAATTATTGCAGTTCAACTTCCTTTAAAATATCCACTACTCACATGTCATAAGCACTTTGTTTCATATTGTTCCCAGGGTGTCTATGGCTATCCTATTGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGTTGTGATGCAATAATTAAACGACTTCATGCTTTAAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACTGAATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAGGTTATAGTTTCTTCCTTCTTATATAACACCAAAAGTACTTCATTCTATTTAGCAATAGTTTGCTATGTCATCTCGCATCACGATGACCAGTATATCTGTCTACTTTTTGGTAGCCTATCATGTCTCCCTATATTCCATTTTATGCATCAATCTTGCTCTTTTAGTCTATTCCGAAAAGAATGATGCCTTTCTATATTTAAAAACCCTTAGTGATACGGTTTATAGCCACAAAAAATGTCATGACATGTTTAAGATCACGTGTTGAACTCTGTGCTCAGTCACACTTTCACATAAAATGAAACCGAGGGAGTACTCTTTTCATGTTCTGCACCGTGACATTTACAAACTTATGCTAATACTGATTTGCCTGGTTTTTTGTGTCTAGTTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAAATTTTCTTTCGAATGCCATGCTTTTTTTTTCTCTC-TTTTTGCAATTCGTAAACACTCTCTTTTAGTTTGTCGCAAAA</genome_strand>
        <mrna_strand>GGATATTTCATGGTTGGTGTCTTCCTCGGAAACCTTAGATCTCACTGAAGTTCGCCGTAGCCGCCGCCGCCGCCGCCGATACTTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGGATTCGATTTCTTATTGTCTAGGACTTTTGGAAGTATTGGAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACACGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCTAGATTGCTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGATAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAGCCGCATCCTATAATCGGCGAAGCATGGGAAGCTTTGAGGCGTTCTATTGTTAACTTCCGAGATCAACCTGTGGGAACTATTGCTGCTATAGATAATTCTGCTGAGGAACTTAACTATGATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTGTCAGAGATTTTGTCCCCAGCGCTTTGGCATTCTTGATGAATGGTGAACCTGATATAGTAAAGAATTTTCTTTTGAAAACCTTGCGCCTCCAATCTCGGGAGAAGAAGATAGACCAGTTCAAGTTGGGGGATGGAGTTATGCCTGCAAGTTTTAAAGTGTCTCATGATCCTGTTAGGAACTATGAGACTATAACTGCTGATTTCGGTGAAAGTGCTATTGGTAGAGTTGCTCCTGTTGATTCAGGGTTCTGGTGGATTATACTACTTCGTGCATACACAAAGTCTACAGGGGACACTTCTTTGGCTGAGATGCCAGAATGCCAAAGGGGTATAAGGCTGATTCTTGAATTATGTCTCTCTGAAGGTTTTGATACATTCCCAACCCTGCTGTGCGCTGATGGATGCTCTATGATTGATCGCAGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTCTATGGCTATCCTATTGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGTTGTGATGCAATAATTAAACGACTTCATGCTTTAAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACTGAATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTATGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAAATTTTCTTTCGAATGCCATGCTTTTTTTCTCTCTCTTTTTTGCAATTCGTAAACACTCTCTTTTAGTTTGTCGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601797" ref_strand="+" ref_description="SGN-E601797 [54845]">
      <seq>cttcctcggaaaccttagatctcactgaagttcgccgtagccgccgccgccgccgccgatagctttgagatctttggattcgatttcttattgtccaggacttttggaagtatcgaaagatgcctagccctgtggatgtgtctcaaaatgggaatgcaagacaagcggaagctgctccatccttgtttgaaatcgaggaagatttggccagattgctggaaaggccaagacaggttaatattgaaaggaagaggtcggtcggatgaaagatctttcagcgaaatgtcaatgactcattcacccgcacgtcaggtataccaaaattcggagaactcttctcgtgttttttgacaatatggttggcagtgtattcacccaggaagcggtggtccggcgatacacacaccccaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="75707" stop="77361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76007" g_stop="76074" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76075" i_stop="76726" i_length="652">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.522" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76727" g_stop="77061" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="412" r_length="343" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E601797" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E601797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76007" e_stop="76074"/>
          <exon e_start="76727" e_stop="77061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTCGGAAACCTTAGATCTCACTGAAGTTCGCCGTAGCCGCCGCCGCCGCCGCCGATA-CTTTGAGGTTGTTATTACCAGCTCCTAGGTTATTTATTTTGTGTTTTATCTATGTTTCTTAATTTTTTCATTTTTCTGTTTGTTTCGATGATATTAAGGTTTTTCTGCATTTGAGATTTTTCATTTTGTGCTGGTTTCAGTATTTGCTGGATTGATCAAAGTATGAATTAAAAAGAAAGAAGTAAATTGATAAAGTAAAAGAAGATCTAACAGTAGTTTGACTTTGATTGTTTAATTAAGTTAATGATTATGATTAATTAATTAAAATTGTGTGTAAGAACTTGCTCTAATTTTGCTCAAGTTGAATTAAACCAAACTTATAGTGAATAAATATTGCTTGTAAATGAAAAAAATGTTGATTTTCTGATCTGGTGTATATTTCAATTTAATGTATTCCAAGTATAAGAGGCATTAATTGCACTCTTTATTACAAGTTGATTGTATTCTTTATTATGTAAGTTCTTGTTTGATGTAGCTCGGACTCTCCAAAAATGTTGCTGCAGCCCATTGGATCCTCCAAAAGAGGAACCTTTCGGAGGATCCGACACACACTTGTTTGATGTTTTTGGAGAGTCTGAGCTATATAGCTTTGTGTTTACTAAGCTTCTGTTACGGGGGCGAATTCTTAAAAGTTTTCTTATTTCATTGGTGATATGCAGATCTTTGGATTCGATTTCTTATTGTCTAGGACTTTTGGAAGTATTGGAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACACGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCTAGATTGCTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTC-GATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTG-TTTTTGATAATATGGTTGG-AGTGTATTCA-CCAGGAAG--GTGGTCCGGC-ATACACACA-CCCAGA</genome_strand>
        <mrna_strand>CTTCCTCGGAAACCTTAGATCTCACTGAAGTTCGCCGTAGCCGCCGCCGCCGCCGCCGATAGCTTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGGATTCGATTTCTTATTGTCCAGGACTTTTGGAAGTATCGAAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACAAGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCCAGATTGCTGGAAAGGCCAAGACAGGTTAATATTGAAAGGAAGAGGTCGGTCGGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCCGCACGTCAGGTATACCAAAATTCGGAGAACTCTTCTCGTGTTTTTTGACAATATGGTTGGCAGTGTATTCACCCAGGAAGCGGTGGTCCGGCGATACACACACCCCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306616" ref_strand="+" ref_description="SGN-E306616 [cLEY-19-K11]">
      <seq>ttcctcggaaaccttatatctcactgaagttcgccgtagccgccgccgccgccgccgatactttgagatctttggattcgatttcttattgtctaggacttttggaagtattggaagatgcctagccctgtggatgtgtctcaaaatgggaatgcaagacacgcggaagctgctccatccttgtttgaaatcgaggaagatttggctagattgctggaaaggccaagacaagttaatattgaaaggaagaggtcgttcgatgaaagatctttcagcgaaatgtcaatgactcattcaccgccacgtcaggtatacaaaaattcggagaactcttctcgtgtttttgataatatggttggagtgtattcaccaggaaggtggtccggcatacacacacccagatcaaccttcggatatgagccgcatcctataatcggcgaagcatgggaagctttgaagcgttctattgttaacttccgagatcaacctgtgggaactattgctgctatagataattctgctgaggaacttaactatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="75708" stop="77499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76008" g_stop="76074" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76075" i_stop="76726" i_length="652">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.522" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76727" g_stop="77199" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="540" r_length="473" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E306616" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76008" e_stop="76074"/>
          <exon e_start="76727" e_stop="77199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCGGAAACCTTAGATCTCACTGAAGTTCGCCGTAGCCGCCGCCGCCGCCGCCGATACTTTGAGGTTGTTATTACCAGCTCCTAGGTTATTTATTTTGTGTTTTATCTATGTTTCTTAATTTTTTCATTTTTCTGTTTGTTTCGATGATATTAAGGTTTTTCTGCATTTGAGATTTTTCATTTTGTGCTGGTTTCAGTATTTGCTGGATTGATCAAAGTATGAATTAAAAAGAAAGAAGTAAATTGATAAAGTAAAAGAAGATCTAACAGTAGTTTGACTTTGATTGTTTAATTAAGTTAATGATTATGATTAATTAATTAAAATTGTGTGTAAGAACTTGCTCTAATTTTGCTCAAGTTGAATTAAACCAAACTTATAGTGAATAAATATTGCTTGTAAATGAAAAAAATGTTGATTTTCTGATCTGGTGTATATTTCAATTTAATGTATTCCAAGTATAAGAGGCATTAATTGCACTCTTTATTACAAGTTGATTGTATTCTTTATTATGTAAGTTCTTGTTTGATGTAGCTCGGACTCTCCAAAAATGTTGCTGCAGCCCATTGGATCCTCCAAAAGAGGAACCTTTCGGAGGATCCGACACACACTTGTTTGATGTTTTTGGAGAGTCTGAGCTATATAGCTTTGTGTTTACTAAGCTTCTGTTACGGGGGCGAATTCTTAAAAGTTTTCTTATTTCATTGGTGATATGCAGATCTTTGGATTCGATTTCTTATTGTCTAGGACTTTTGGAAGTATTGGAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACACGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCTAGATTGCTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGATAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAGCCGCATCCTATAATCGGCGAAGCATGGGAAGCTTTGAGGCGTTCTATTGTTAACTTCCGAGATCAACCTGTGGGAACTATTGCTGCTATAGATAATTCTGCTGAGGAACTTAACTATGAT</genome_strand>
        <mrna_strand>TTCCTCGGAAACCTTATATCTCACTGAAGTTCGCCGTAGCCGCCGCCGCCGCCGCCGATACTTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGGATTCGATTTCTTATTGTCTAGGACTTTTGGAAGTATTGGAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACACGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCTAGATTGCTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGATAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAGCCGCATCCTATAATCGGCGAAGCATGGGAAGCTTTGAAGCGTTCTATTGTTAACTTCCGAGATCAACCTGTGGGAACTATTGCTGCTATAGATAATTCTGCTGAGGAACTTAACTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471150" ref_strand="+" ref_description="SGN-E471150 [cSTB-23-A9]">
      <seq>cctcgtgccgaatcggcacgaggcggaaaccttagatctcactgaagttcgccgccgccgccgccgccgccgatagctttgaggttgttcttaccagctcctagatctttggattcgatttcttattgtccaggacttttggaagtatcgaaagatgcctagccctgtggatgtgtctcaaaatgggaatgcaagacaagcggaagctgctccatccttgtttgaaatcgaggaagatttggccagattgctggaaaggccaagacaggttaatattgaaaggaagaggtcgttcgatgaaagatctttcagcgaaatgtcaatgactcattcaccgccacgtcaggtatacaaaaatttggagaactcttctcgtgtttttgacaatatggttggagtgtattcaccaggaaggtggtccggcatacacacacccaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="75713" stop="77361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76013" g_stop="76095" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="104" r_length="81" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76096" i_stop="76726" i_length="631">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.522" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76727" g_stop="77061" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="439" r_length="335" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E471150" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76013" e_stop="76095"/>
          <exon e_start="76727" e_stop="77061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAACCTTAGATCTCACTGAAGTTCGCCGTAGCCGCCGCCGCCGCCGCCGATA-CTTTGAGGTTGTTATTACCAGCTCCTAGGTTATTTATTTTGTGTTTTATCTATGTTTCTTAATTTTTTCATTTTTCTGTTTGTTTCGATGATATTAAGGTTTTTCTGCATTTGAGATTTTTCATTTTGTGCTGGTTTCAGTATTTGCTGGATTGATCAAAGTATGAATTAAAAAGAAAGAAGTAAATTGATAAAGTAAAAGAAGATCTAACAGTAGTTTGACTTTGATTGTTTAATTAAGTTAATGATTATGATTAATTAATTAAAATTGTGTGTAAGAACTTGCTCTAATTTTGCTCAAGTTGAATTAAACCAAACTTATAGTGAATAAATATTGCTTGTAAATGAAAAAAATGTTGATTTTCTGATCTGGTGTATATTTCAATTTAATGTATTCCAAGTATAAGAGGCATTAATTGCACTCTTTATTACAAGTTGATTGTATTCTTTATTATGTAAGTTCTTGTTTGATGTAGCTCGGACTCTCCAAAAATGTTGCTGCAGCCCATTGGATCCTCCAAAAGAGGAACCTTTCGGAGGATCCGACACACACTTGTTTGATGTTTTTGGAGAGTCTGAGCTATATAGCTTTGTGTTTACTAAGCTTCTGTTACGGGGGCGAATTCTTAAAAGTTTTCTTATTTCATTGGTGATATGCAGATCTTTGGATTCGATTTCTTATTGTCTAGGACTTTTGGAAGTATTGGAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACACGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCTAGATTGCTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGATAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGA</genome_strand>
        <mrna_strand>CGGAAACCTTAGATCTCACTGAAGTTCGCC---GCCGCCGCCGCCGCCGCCGATAGCTTTGAGGTTGTTCTTACCAGCTCCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGGATTCGATTTCTTATTGTCCAGGACTTTTGGAAGTATCGAAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACAAGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCCAGATTGCTGGAAAGGCCAAGACAGGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTTGGAGAACTCTTCTCGTGTTTTTGACAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477309" ref_strand="+" ref_description="SGN-E477309 [cSTB-47-H6]">
      <seq>ggaaaccttagatctcactgaagttcgccgccgccgccgccgccgccgatagctttgagatctttggattcgatttcttattgtccaggacttttggaagtatcgaaagatgcctagccctgtggatgtgtctcaaaatgggaatgcaagacaagcggaagctgctccatccttgtttgaaatcgaggaagatttggccagattgctggaaaggccaagacaggttaatattgaaaggaagaggtcgttcgatgaaagatctttcagcgaaatgtcaatgactcattcaccgccacgtcaggtatacaaaaatttggagaactcttctcgtgtttttgacaatatggttggagtgtattcaccaggaaggtggtccggcatacacacacccagatcaaccttcggatatgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="75714" stop="77381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76014" g_stop="76074" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76075" i_stop="76726" i_length="652">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.522" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76727" g_stop="77081" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="414" r_length="355" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E477309" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76014" e_stop="76074"/>
          <exon e_start="76727" e_stop="77081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACCTTAGATCTCACTGAAGTTCGCCGTAGCCGCCGCCGCCGCCGCCGATA-CTTTGAGGTTGTTATTACCAGCTCCTAGGTTATTTATTTTGTGTTTTATCTATGTTTCTTAATTTTTTCATTTTTCTGTTTGTTTCGATGATATTAAGGTTTTTCTGCATTTGAGATTTTTCATTTTGTGCTGGTTTCAGTATTTGCTGGATTGATCAAAGTATGAATTAAAAAGAAAGAAGTAAATTGATAAAGTAAAAGAAGATCTAACAGTAGTTTGACTTTGATTGTTTAATTAAGTTAATGATTATGATTAATTAATTAAAATTGTGTGTAAGAACTTGCTCTAATTTTGCTCAAGTTGAATTAAACCAAACTTATAGTGAATAAATATTGCTTGTAAATGAAAAAAATGTTGATTTTCTGATCTGGTGTATATTTCAATTTAATGTATTCCAAGTATAAGAGGCATTAATTGCACTCTTTATTACAAGTTGATTGTATTCTTTATTATGTAAGTTCTTGTTTGATGTAGCTCGGACTCTCCAAAAATGTTGCTGCAGCCCATTGGATCCTCCAAAAGAGGAACCTTTCGGAGGATCCGACACACACTTGTTTGATGTTTTTGGAGAGTCTGAGCTATATAGCTTTGTGTTTACTAAGCTTCTGTTACGGGGGCGAATTCTTAAAAGTTTTCTTATTTCATTGGTGATATGCAGATCTTTGGATTCGATTTCTTATTGTCTAGGACTTTTGGAAGTATTGGAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACACGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCTAGATTGCTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGATAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAGCC</genome_strand>
        <mrna_strand>GGAAACCTTAGATCTCACTGAAGTTCGCC---GCCGCCGCCGCCGCCGCCGATAGCTTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGGATTCGATTTCTTATTGTCCAGGACTTTTGGAAGTATCGAAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACAAGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCCAGATTGCTGGAAAGGCCAAGACAGGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTTGGAGAACTCTTCTCGTGTTTTTGACAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312238" ref_strand="+" ref_description="SGN-E312238 [cTOA-5-D5]">
      <seq>gaaaccttagatctcactgaagttcgccgtagccgccgccgccggcgccgatactttgagatctttggattcgatttcttattgtctaggacttttggaagtattggaagatgcctagccctgtggatgtgtctcaaaatgggaatgcaagacacgcggaagctgctccatccttgtttgaaatcgaggaagatttggctagattgctggaaaggccaagacaagttaatattgaaaggaagaggtcgttcgatgaaagatctttcagcgaaatgtcaatgactcattcaccgccacgtcaggtatacaaaaattcggagaactcttctcgtgtttttgataatatggttggagtgtattcaccaggaaggtggtccggcatacacacacccagatcaaccttcggatatgagccgcatcctataatcggcgaagcatgggaagctttgaggcgttctattgttaacttccgagatcaacctgtgggaactattgctgctatagataattctgctgaggaacttaactatgatcaggttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="75715" stop="77504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76015" g_stop="76074" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76075" i_stop="76726" i_length="652">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.522" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76727" g_stop="77202" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="536" r_length="476" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77203" i_stop="77285" i_length="83">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77286" g_stop="77291" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="542" r_length="6" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E312238" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76015" e_stop="76074"/>
          <exon e_start="76727" e_stop="77202"/>
          <exon e_start="77286" e_stop="77291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCTTAGATCTCACTGAAGTTCGCCGTAGCCGCCGCCGCCGCCGCCGATACTTTGAGGTTGTTATTACCAGCTCCTAGGTTATTTATTTTGTGTTTTATCTATGTTTCTTAATTTTTTCATTTTTCTGTTTGTTTCGATGATATTAAGGTTTTTCTGCATTTGAGATTTTTCATTTTGTGCTGGTTTCAGTATTTGCTGGATTGATCAAAGTATGAATTAAAAAGAAAGAAGTAAATTGATAAAGTAAAAGAAGATCTAACAGTAGTTTGACTTTGATTGTTTAATTAAGTTAATGATTATGATTAATTAATTAAAATTGTGTGTAAGAACTTGCTCTAATTTTGCTCAAGTTGAATTAAACCAAACTTATAGTGAATAAATATTGCTTGTAAATGAAAAAAATGTTGATTTTCTGATCTGGTGTATATTTCAATTTAATGTATTCCAAGTATAAGAGGCATTAATTGCACTCTTTATTACAAGTTGATTGTATTCTTTATTATGTAAGTTCTTGTTTGATGTAGCTCGGACTCTCCAAAAATGTTGCTGCAGCCCATTGGATCCTCCAAAAGAGGAACCTTTCGGAGGATCCGACACACACTTGTTTGATGTTTTTGGAGAGTCTGAGCTATATAGCTTTGTGTTTACTAAGCTTCTGTTACGGGGGCGAATTCTTAAAAGTTTTCTTATTTCATTGGTGATATGCAGATCTTTGGATTCGATTTCTTATTGTCTAGGACTTTTGGAAGTATTGGAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACACGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCTAGATTGCTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGATAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAGCCGCATCCTATAATCGGCGAAGCATGGGAAGCTTTGAGGCGTTCTATTGTTAACTTCCGAGATCAACCTGTGGGAACTATTGCTGCTATAGATAATTCTGCTGAGGAACTTAACTATGATCAGGTAAATGCTTATTGTTCTAGTTCTTAGATGGATACAAGTTTGTCTTTATGTATTTTGTTGTGATTTAATATCCCGTGAAGCAGGTCGAT</genome_strand>
        <mrna_strand>GAAACCTTAGATCTCACTGAAGTTCGCCGTAGCCGCCGCCGCCGGCGCCGATACTTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGGATTCGATTTCTTATTGTCTAGGACTTTTGGAAGTATTGGAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACACGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCTAGATTGCTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGATAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAGCCGCATCCTATAATCGGCGAAGCATGGGAAGCTTTGAGGCGTTCTATTGTTAACTTCCGAGATCAACCTGTGGGAACTATTGCTGCTATAGATAATTCTGCTGAGGAACTTAACTATGATCAG...................................................................................GTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703207" ref_strand="+" ref_description="SGN-E703207 [FA20DD11]">
      <seq>cttagatctcactaaagttcgccgtagccgccgccgccgccgatagctttgagatctttggattcgatttcttattgtctaggacttttggaagtattggaagatgcctagccctgtggatgtgtctcaaaatgggaatgcaagacacgcggaagctgctccatccttgtttgaaatcgaggaagatttggctagattgctggaaaggccaagacaagttaatattgaaaggaagaggtcgttcgatgaaagatctttcagcgaaatgtcaatgactcattcaccgccacgtcaggtatacaaaaattcggagaactcttctcgtgtttttgataatatggttggagtgtattcaccaggaaggtggtccggcatacacacacccagatcaaccttcggatatgagccgcatcctataatcggcgaagcatgggaagctttgaggcgttctattgttaacttccgagatcaacctgtgggaactattgctgctatagataattctgctgaggaacttaactatgatcaggtttttgtcagagattttgtccccagtgctttggcattcttgatgaatggtgaacctgatatagtaaagaattttattctgaaaaccttgcgcctccaatctcgggagaagaagatagaccagttcaagttgggggatggagttatgcctgcaagttttaaagtgtctcatgatcctgttaggaactatgagactataactgctgatttcggtgaaagtgctattggtagagttgctcctgttgattcagggttctggtggattatactacttcgtgcatacacaaagtctacagggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="75720" stop="78523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76020" g_stop="76074" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76075" i_stop="76726" i_length="652">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.522" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76727" g_stop="77202" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="529" r_length="476" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77203" i_stop="77924" i_length="722">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77925" g_stop="78223" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="828" r_length="299" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E703207" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76020" e_stop="76074"/>
          <exon e_start="76727" e_stop="77202"/>
          <exon e_start="77925" e_stop="78223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGATCTCACTGAAGTTCGCCGTAGCCGCCGCCGCCGCCGCCGATACTTTGAGGTTGTTATTACCAGCTCCTAGGTTATTTATTTTGTGTTTTATCTATGTTTCTTAATTTTTTCATTTTTCTGTTTGTTTCGATGATATTAAGGTTTTTCTGCATTTGAGATTTTTCATTTTGTGCTGGTTTCAGTATTTGCTGGATTGATCAAAGTATGAATTAAAAAGAAAGAAGTAAATTGATAAAGTAAAAGAAGATCTAACAGTAGTTTGACTTTGATTGTTTAATTAAGTTAATGATTATGATTAATTAATTAAAATTGTGTGTAAGAACTTGCTCTAATTTTGCTCAAGTTGAATTAAACCAAACTTATAGTGAATAAATATTGCTTGTAAATGAAAAAAATGTTGATTTTCTGATCTGGTGTATATTTCAATTTAATGTATTCCAAGTATAAGAGGCATTAATTGCACTCTTTATTACAAGTTGATTGTATTCTTTATTATGTAAGTTCTTGTTTGATGTAGCTCGGACTCTCCAAAAATGTTGCTGCAGCCCATTGGATCCTCCAAAAGAGGAACCTTTCGGAGGATCCGACACACACTTGTTTGATGTTTTTGGAGAGTCTGAGCTATATAGCTTTGTGTTTACTAAGCTTCTGTTACGGGGGCGAATTCTTAAAAGTTTTCTTATTTCATTGGTGATATGCAGATCTTTGGATTCGATTTCTTATTGTCTAGGACTTTTGGAAGTATTGGAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACACGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCTAGATTGCTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGATAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAGCCGCATCCTATAATCGGCGAAGCATGGGAAGCTTTGAGGCGTTCTATTGTTAACTTCCGAGATCAACCTGTGGGAACTATTGCTGCTATAGATAATTCTGCTGAGGAACTTAACTATGATCAGGTAAATGCTTATTGTTCTAGTTCTTAGATGGATACAAGTTTGTCTTTATGTATTTTGTTGTGATTTAATATCCCGTGAAGCAGGTCGATTATGTGCTTCAATGGAACTTGTTTTGACGAGTGTCCTCTGATAAGTTGTACTAGATGTTTCTTTACGTAATAAATAGAAAATGGTGAATTCCTATGTCCACACTATAGTTATCAGTGCAACTGATTGGTTTGCGGTTGACTGATAAGATGAAGAGGGGGTATAGTTTGCAGGCCCAGCTATTTCAATGAATATGAGCTAAGCTTGACCGACTGAATTGTTCAAATAGTTTACATAAAAACTTATGTAGAACCAGTGTTGTCAAAGGCGCATTTAAGCCATGAAGCGGGACTCGAAATGTGTCTGAGCACTTTTTCTCGCTTATTGTGCATTCAGCGTCGTTAGCAAGGTTCTCTAAGGCATACTTATCATTGTGAATTAACCTCTTATGACGAGGCGGCACTAAACAATTGATATTTCACTTATTTGTTATTCATGCTTATTTGCGCTTAAAACCCCAATGAACCTTTGAGCGTTTTTGCGTCTGATCTAGAACCAGATTCTAGATATTCTCCAGAGGTAAAACCAGCTTACTGATGGGCCCAGCTTTCCGAAATCCTTTCACAGTCGTCTTTCTCTATGTACATGACAACCATTCTACTTGCAATTTGCAGTTCTGACTTAAAATTTGGCAGGTTTTTGTCAGAGATTTTGTCCCCAGCGCTTTGGCATTCTTGATGAATGGTGAACCTGATATAGTAAAGAATTTTCTTTTGAAAACCTTGCGCCTCCAATCTCGGGAGAAGAAGATAGACCAGTTCAAGTTGGGGGATGGAGTTATGCCTGCAAGTTTTAAAGTGTCTCATGATCCTGTTAGGAACTATGAGACTATAACTGCTGATTTCGGTGAAAGTGCTATTGGTAGAGTTGCTCCTGTTGATTCAGGGTTCTGGTGGATTATACTACTTCGTGCATACACAAAGTCTACAGGGGA</genome_strand>
        <mrna_strand>CTTAGATCTCACTAAAGTTCGCCGTAGCCGCCGCCGCCGCCG-ATA-GCTTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGGATTCGATTTCTTATTGTCTAGGACTTTTGGAAGTATTGGAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACACGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCTAGATTGCTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGATAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAGCCGCATCCTATAATCGGCGAAGCATGGGAAGCTTTGAGGCGTTCTATTGTTAACTTCCGAGATCAACCTGTGGGAACTATTGCTGCTATAGATAATTCTGCTGAGGAACTTAACTATGATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTGTCAGAGATTTTGTCCCCAGTGCTTTGGCATTCTTGATGAATGGTGAACCTGATATAGTAAAGAATTTTATTCTGAAAACCTTGCGCCTCCAATCTCGGGAGAAGAAGATAGACCAGTTCAAGTTGGGGGATGGAGTTATGCCTGCAAGTTTTAAAGTGTCTCATGATCCTGTTAGGAACTATGAGACTATAACTGCTGATTTCGGTGAAAGTGCTATTGGTAGAGTTGCTCCTGTTGATTCAGGGTTCTGGTGGATTATACTACTTCGTGCATACACAAAGTCTACAGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560326" ref_strand="+" ref_description="SGN-E560326 [19961]">
      <seq>ctttgagatctttggattcgatttcttattgtccaggacttttggaagtatcgaaagatgctagccctgtggatgtgtctcaaaatgggaatgcaagacaagcggaagctgctccatccttgtttgaaatcgaggaagatttggccagattgctggaaaggccaagacaggttaatattgaaaggaagaggtcgttcgatgaaagatctttcagcgaaatgtcaatgactcattcaccgccacgtcaggtatacaaaaattcggagaactcttctcgtgtttttgacaatatggttggagtgtattcaccaggaaggtggtccggcatacacacacccagatcaaccttcggatatgaaccgcatcctataataggcgaagcatgggaagctttgaggcgttctattgttaacttccgagatcaacctgtgggaactattgctgctatagataattctgctgaggaacttaactatgatcaggtttttgtcagagattttgtccccagcgctttggcattcttgatgaatggtgaacctgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="76420" stop="78286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76719" g_stop="77202" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77203" i_stop="77924" i_length="722">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77925" g_stop="77986" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="544" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E560326" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76719" e_stop="77202"/>
          <exon e_start="77925" e_stop="77986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGCAGATCTTTGGATTCGATTTCTTATTGTCTAGGACTTTTGGAAGTATTGGAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACACGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCTAGATTGCTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGATAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAGCCGCATCCTATAATCGGCGAAGCATGGGAAGCTTTGAGGCGTTCTATTGTTAACTTCCGAGATCAACCTGTGGGAACTATTGCTGCTATAGATAATTCTGCTGAGGAACTTAACTATGATCAGGTAAATGCTTATTGTTCTAGTTCTTAGATGGATACAAGTTTGTCTTTATGTATTTTGTTGTGATTTAATATCCCGTGAAGCAGGTCGATTATGTGCTTCAATGGAACTTGTTTTGACGAGTGTCCTCTGATAAGTTGTACTAGATGTTTCTTTACGTAATAAATAGAAAATGGTGAATTCCTATGTCCACACTATAGTTATCAGTGCAACTGATTGGTTTGCGGTTGACTGATAAGATGAAGAGGGGGTATAGTTTGCAGGCCCAGCTATTTCAATGAATATGAGCTAAGCTTGACCGACTGAATTGTTCAAATAGTTTACATAAAAACTTATGTAGAACCAGTGTTGTCAAAGGCGCATTTAAGCCATGAAGCGGGACTCGAAATGTGTCTGAGCACTTTTTCTCGCTTATTGTGCATTCAGCGTCGTTAGCAAGGTTCTCTAAGGCATACTTATCATTGTGAATTAACCTCTTATGACGAGGCGGCACTAAACAATTGATATTTCACTTATTTGTTATTCATGCTTATTTGCGCTTAAAACCCCAATGAACCTTTGAGCGTTTTTGCGTCTGATCTAGAACCAGATTCTAGATATTCTCCAGAGGTAAAACCAGCTTACTGATGGGCCCAGCTTTCCGAAATCCTTTCACAGTCGTCTTTCTCTATGTACATGACAACCATTCTACTTGCAATTTGCAGTTCTGACTTAAAATTTGGCAGGTTTTTGTCAGAGATTTTGTCCCCAGCGCTTTGGCATTCTTGATGAATGGTGAACCTGATAT</genome_strand>
        <mrna_strand>CTTTG-AGATCTTTGGATTCGATTTCTTATTGTCCAGGACTTTTGGAAGTATCGAAAGATG-CTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACAAGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCCAGATTGCTGGAAAGGCCAAGACAGGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGACAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAACCGCATCCTATAATAGGCGAAGCATGGGAAGCTTTGAGGCGTTCTATTGTTAACTTCCGAGATCAACCTGTGGGAACTATTGCTGCTATAGATAATTCTGCTGAGGAACTTAACTATGATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTGTCAGAGATTTTGTCCCCAGCGCTTTGGCATTCTTGATGAATGGTGAACCTGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710513" ref_strand="+" ref_description="SGN-E710513 [FA55CG01]">
      <seq>ctggaaaggccaagacaagttaatattgaaaggaagaggtcgttcgatgaaagatctttcagcgaaatgtcaatgactcattcaccgccacgtcaggtatacaaaaattcggagaactcttctcgtgtttttgataatatggttggagtgtattcaccaggaaggtggtccggcatacacacacccagatcaaccttcggatatgagccgcatcctataatcggcgaagcatgggaagctttgaggcgttctattgttaacttccgagatcaacctgtgggaactattgctgctatagataattctgctgaggaacttaactatgatcaggtttttgtcagagattttgtccccagcgctttggcattcttgatgaatggtgaacctgatatagtaaagaattttcttttgaaaaccttgcgcctccaatctcgggagaagaagatagaccagttcaagttgggggatggagttatgcctgcaagttttaaagtgtctcatgatcctgttaggaactatgagactataactgctgatttcggtgaaagtgctattggtagagttgctcctgttgattcagggttctggtggattatactacttcgtgcatacacaaagtctacaggggacacttctttggctgagatgccagaatgccaaaggggtataaggctgattcttgaattatgtctctctgaaggttttgatacattcccaaccctgctgtgcgctgatggatgctctatgattgatcgcagaatgggtgtctatggctatcctattgaaatacaagcacttttctttatggccttaagatgtgccttgtttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="76573" stop="79560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76873" g_stop="77202" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77203" i_stop="77924" i_length="722">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77925" g_stop="78356" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="762" r_length="432" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78357" i_stop="79190" i_length="834">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.661" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79191" g_stop="79260" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="832" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E710513" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76873" e_stop="77202"/>
          <exon e_start="77925" e_stop="78356"/>
          <exon e_start="79191" e_stop="79260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGATAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAGCCGCATCCTATAATCGGCGAAGCATGGGAAGCTTTGAGGCGTTCTATTGTTAACTTCCGAGATCAACCTGTGGGAACTATTGCTGCTATAGATAATTCTGCTGAGGAACTTAACTATGATCAGGTAAATGCTTATTGTTCTAGTTCTTAGATGGATACAAGTTTGTCTTTATGTATTTTGTTGTGATTTAATATCCCGTGAAGCAGGTCGATTATGTGCTTCAATGGAACTTGTTTTGACGAGTGTCCTCTGATAAGTTGTACTAGATGTTTCTTTACGTAATAAATAGAAAATGGTGAATTCCTATGTCCACACTATAGTTATCAGTGCAACTGATTGGTTTGCGGTTGACTGATAAGATGAAGAGGGGGTATAGTTTGCAGGCCCAGCTATTTCAATGAATATGAGCTAAGCTTGACCGACTGAATTGTTCAAATAGTTTACATAAAAACTTATGTAGAACCAGTGTTGTCAAAGGCGCATTTAAGCCATGAAGCGGGACTCGAAATGTGTCTGAGCACTTTTTCTCGCTTATTGTGCATTCAGCGTCGTTAGCAAGGTTCTCTAAGGCATACTTATCATTGTGAATTAACCTCTTATGACGAGGCGGCACTAAACAATTGATATTTCACTTATTTGTTATTCATGCTTATTTGCGCTTAAAACCCCAATGAACCTTTGAGCGTTTTTGCGTCTGATCTAGAACCAGATTCTAGATATTCTCCAGAGGTAAAACCAGCTTACTGATGGGCCCAGCTTTCCGAAATCCTTTCACAGTCGTCTTTCTCTATGTACATGACAACCATTCTACTTGCAATTTGCAGTTCTGACTTAAAATTTGGCAGGTTTTTGTCAGAGATTTTGTCCCCAGCGCTTTGGCATTCTTGATGAATGGTGAACCTGATATAGTAAAGAATTTTCTTTTGAAAACCTTGCGCCTCCAATCTCGGGAGAAGAAGATAGACCAGTTCAAGTTGGGGGATGGAGTTATGCCTGCAAGTTTTAAAGTGTCTCATGATCCTGTTAGGAACTATGAGACTATAACTGCTGATTTCGGTGAAAGTGCTATTGGTAGAGTTGCTCCTGTTGATTCAGGGTTCTGGTGGATTATACTACTTCGTGCATACACAAAGTCTACAGGGGACACTTCTTTGGCTGAGATGCCAGAATGCCAAAGGGGTATAAGGCTGATTCTTGAATTATGTCTCTCTGAAGGTTTTGATACATTCCCAACCCTGCTGTGCGCTGATGGATGCTCTATGATTGATCGCAGAATGGTCAGTCTGATGTACTACTATCCGCTCTTTATCGGTTTTTTAAACTAGATCTGACTTATGCTCATGCCTTGTTTTCTGTTTATTACATGCTTGATTTTCTACTTAATATTACATGATGACAGTGATGACAAGATATGAGATAGCTATCAACTGTTACTTCTAGAATAGTATAATTGACCAAATGCATATTTATAATCTGTCAAGATTTGGTTAGCCTACATACTTATTACGTGCTTGATTTTCTATTTCTCGTACATAATGACAGTGATTCTGATTCTGACTTAGGTAAGTTAAGCTTCAAATAGGAGTTCTGCTGAGATTTCACATCATTTGCTTGAAGTTAAGAAATAGGCAGTTGAGCTTTGTCTTGCTTTTTGGCGGGATTAGGCTTGGTGGGAGTCTGGTAGCACTGTGTCTGTCTTAGTATTAGTCGTATACACGTACTTTCTTGCGTTTGACCATCTGTTTTCTATTGTGTTTCAGTTACCGCTTGATTTCGATGTGCTATGTAGTGCTTTCCTTATTAATTGACGTGTTTTCTTCACTGCTGTATCTCCTTTTTCATAACTTCTTTGATGTGCTGCACTTTGAGCTGAGGGTCTTTCGGAAACAACCTCTCTACCTCCACGATGTAGGGGTAAGGTCTGTGTATACACTACCCTCCTGAGACTCCACTTGTGGGATTACACTGGACCAATAAGAAGACTTGTACTCTTTTCTCATATTCTCAATAAATTTGTGGGCATATTAAAATTCTCAATTATTGCAGTTCAACTTCCTTTAAAATATCCACTACTCACATGTCATAAGCACTTTGTTTCATATTGTTCCCAGGGTGTCTATGGCTATCCTATTGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCC</genome_strand>
        <mrna_strand>CTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGATAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAGCCGCATCCTATAATCGGCGAAGCATGGGAAGCTTTGAGGCGTTCTATTGTTAACTTCCGAGATCAACCTGTGGGAACTATTGCTGCTATAGATAATTCTGCTGAGGAACTTAACTATGATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTGTCAGAGATTTTGTCCCCAGCGCTTTGGCATTCTTGATGAATGGTGAACCTGATATAGTAAAGAATTTTCTTTTGAAAACCTTGCGCCTCCAATCTCGGGAGAAGAAGATAGACCAGTTCAAGTTGGGGGATGGAGTTATGCCTGCAAGTTTTAAAGTGTCTCATGATCCTGTTAGGAACTATGAGACTATAACTGCTGATTTCGGTGAAAGTGCTATTGGTAGAGTTGCTCCTGTTGATTCAGGGTTCTGGTGGATTATACTACTTCGTGCATACACAAAGTCTACAGGGGACACTTCTTTGGCTGAGATGCCAGAATGCCAAAGGGGTATAAGGCTGATTCTTGAATTATGTCTCTCTGAAGGTTTTGATACATTCCCAACCCTGCTGTGCGCTGATGGATGCTCTATGATTGATCGCAGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTCTATGGCTATCCTATTGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706587" ref_strand="+" ref_description="SGN-E706587 [FA30BE07]">
      <seq>gataattctgctgaggaacttaactatgatcaggtttttgtcagagattttgtccccagcgctttggcattcttgatgaatggtgaacctgatatagtaaagaattttcttttgaaaaccttgcgcctccaatctcgggagaagaagatagaccagttcaagttgggggatggagttatgcctgcaagttttaaagtgtctcatgatcctgttaggaactatgagactataactgctgatttcggtgaaagtgctattggtagagttgctcctgttgattcagggttctggtggattatactacttcgtgcatacacaaagtctacaggggacacttctttggctgagatgccagaatgccaaaggggtataaggctgattcttgaattatgtctctctgaaggttttgatacattcccaaccctgctgtgcgctgatggatgctctatgattgatcgcagaatgggtgtctatggctatcctattgaaatacaagcacttttctttatggccttaagatgtgccttgtttctccttaaacacgacgaagaaaaccaagagtgttgtgatgcaataattaaacgacttcatgctttaagctttcacatgagaagttactattggctcgacataaaacaactgaatgatatataccgctacaaaacagaagagtactctcacactgcagtanacaagtttaatgtgatgccagattcccttccggagtgggtttttgatttcatgccaactcgtggtggttacttcatcggaaatgttagtcctgctcacatggactttcgttggttttgtttgggtaactgtatttcaatcttgtcatctttggctacacctgagcaagcttccgccataatggatctcgttgaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="76870" stop="79913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77170" g_stop="77202" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77203" i_stop="77924" i_length="722">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77925" g_stop="78356" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="465" r_length="432" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78357" i_stop="79190" i_length="834">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.661" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79191" g_stop="79613" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="888" r_length="423" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E706587" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77170" e_stop="77202"/>
          <exon e_start="77925" e_stop="78356"/>
          <exon e_start="79191" e_stop="79613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATTCTGCTGAGGAACTTAACTATGATCAGGTAAATGCTTATTGTTCTAGTTCTTAGATGGATACAAGTTTGTCTTTATGTATTTTGTTGTGATTTAATATCCCGTGAAGCAGGTCGATTATGTGCTTCAATGGAACTTGTTTTGACGAGTGTCCTCTGATAAGTTGTACTAGATGTTTCTTTACGTAATAAATAGAAAATGGTGAATTCCTATGTCCACACTATAGTTATCAGTGCAACTGATTGGTTTGCGGTTGACTGATAAGATGAAGAGGGGGTATAGTTTGCAGGCCCAGCTATTTCAATGAATATGAGCTAAGCTTGACCGACTGAATTGTTCAAATAGTTTACATAAAAACTTATGTAGAACCAGTGTTGTCAAAGGCGCATTTAAGCCATGAAGCGGGACTCGAAATGTGTCTGAGCACTTTTTCTCGCTTATTGTGCATTCAGCGTCGTTAGCAAGGTTCTCTAAGGCATACTTATCATTGTGAATTAACCTCTTATGACGAGGCGGCACTAAACAATTGATATTTCACTTATTTGTTATTCATGCTTATTTGCGCTTAAAACCCCAATGAACCTTTGAGCGTTTTTGCGTCTGATCTAGAACCAGATTCTAGATATTCTCCAGAGGTAAAACCAGCTTACTGATGGGCCCAGCTTTCCGAAATCCTTTCACAGTCGTCTTTCTCTATGTACATGACAACCATTCTACTTGCAATTTGCAGTTCTGACTTAAAATTTGGCAGGTTTTTGTCAGAGATTTTGTCCCCAGCGCTTTGGCATTCTTGATGAATGGTGAACCTGATATAGTAAAGAATTTTCTTTTGAAAACCTTGCGCCTCCAATCTCGGGAGAAGAAGATAGACCAGTTCAAGTTGGGGGATGGAGTTATGCCTGCAAGTTTTAAAGTGTCTCATGATCCTGTTAGGAACTATGAGACTATAACTGCTGATTTCGGTGAAAGTGCTATTGGTAGAGTTGCTCCTGTTGATTCAGGGTTCTGGTGGATTATACTACTTCGTGCATACACAAAGTCTACAGGGGACACTTCTTTGGCTGAGATGCCAGAATGCCAAAGGGGTATAAGGCTGATTCTTGAATTATGTCTCTCTGAAGGTTTTGATACATTCCCAACCCTGCTGTGCGCTGATGGATGCTCTATGATTGATCGCAGAATGGTCAGTCTGATGTACTACTATCCGCTCTTTATCGGTTTTTTAAACTAGATCTGACTTATGCTCATGCCTTGTTTTCTGTTTATTACATGCTTGATTTTCTACTTAATATTACATGATGACAGTGATGACAAGATATGAGATAGCTATCAACTGTTACTTCTAGAATAGTATAATTGACCAAATGCATATTTATAATCTGTCAAGATTTGGTTAGCCTACATACTTATTACGTGCTTGATTTTCTATTTCTCGTACATAATGACAGTGATTCTGATTCTGACTTAGGTAAGTTAAGCTTCAAATAGGAGTTCTGCTGAGATTTCACATCATTTGCTTGAAGTTAAGAAATAGGCAGTTGAGCTTTGTCTTGCTTTTTGGCGGGATTAGGCTTGGTGGGAGTCTGGTAGCACTGTGTCTGTCTTAGTATTAGTCGTATACACGTACTTTCTTGCGTTTGACCATCTGTTTTCTATTGTGTTTCAGTTACCGCTTGATTTCGATGTGCTATGTAGTGCTTTCCTTATTAATTGACGTGTTTTCTTCACTGCTGTATCTCCTTTTTCATAACTTCTTTGATGTGCTGCACTTTGAGCTGAGGGTCTTTCGGAAACAACCTCTCTACCTCCACGATGTAGGGGTAAGGTCTGTGTATACACTACCCTCCTGAGACTCCACTTGTGGGATTACACTGGACCAATAAGAAGACTTGTACTCTTTTCTCATATTCTCAATAAATTTGTGGGCATATTAAAATTCTCAATTATTGCAGTTCAACTTCCTTTAAAATATCCACTACTCACATGTCATAAGCACTTTGTTTCATATTGTTCCCAGGGTGTCTATGGCTATCCTATTGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGTTGTGATGCAATAATTAAACGACTTCATGCTTTAAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACTGAATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCA</genome_strand>
        <mrna_strand>GATAATTCTGCTGAGGAACTTAACTATGATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTGTCAGAGATTTTGTCCCCAGCGCTTTGGCATTCTTGATGAATGGTGAACCTGATATAGTAAAGAATTTTCTTTTGAAAACCTTGCGCCTCCAATCTCGGGAGAAGAAGATAGACCAGTTCAAGTTGGGGGATGGAGTTATGCCTGCAAGTTTTAAAGTGTCTCATGATCCTGTTAGGAACTATGAGACTATAACTGCTGATTTCGGTGAAAGTGCTATTGGTAGAGTTGCTCCTGTTGATTCAGGGTTCTGGTGGATTATACTACTTCGTGCATACACAAAGTCTACAGGGGACACTTCTTTGGCTGAGATGCCAGAATGCCAAAGGGGTATAAGGCTGATTCTTGAATTATGTCTCTCTGAAGGTTTTGATACATTCCCAACCCTGCTGTGCGCTGATGGATGCTCTATGATTGATCGCAGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTCTATGGCTATCCTATTGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGTTGTGATGCAATAATTAAACGACTTCATGCTTTAAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACTGAATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTANACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTTCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249886" ref_strand="+" ref_description="SGN-E249886 [cLEF-57-P19]">
      <seq>gagtggcattcttgatgaatggtgaaccctgatatagtaaagaattttcttttgaaaacccttgccgccctccaatctcgggagaagaagatagaccagttcaagttgggggatggagttatgcctgcaagttttaaagtgtctcatgatcctgttaggaactatgagactataactgctgatttcggtgaaagtgctattggtagagttgctcctgttgattcagggttctggtggattatactacttcgtgccataccaccaaagtctacaggggacaccttctttggctgagatgccagaatgccaaaggggtataaggctgattcttgaattatgtctctctgaaggttttgatacattcccaaccctgctgtgcgctgatggatgctctatgattgatcgcagaatgggtgtctatggctatcctattgaaatacaagcacttttctttatggccttaagatgtgccttgtttctccttaaacacgacgaagaaaaccaagagtgttgtgatgcaataattaaacgacttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="77656" stop="79617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77953" g_stop="78356" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78357" i_stop="79190" i_length="834">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.661" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79191" g_stop="79317" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="539" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E249886" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77953" e_stop="78356"/>
          <exon e_start="79191" e_stop="79317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGCATTCTTGATGAATGGTGAA-CCTGATATAGTAAAGAATTTTCTTTTGAAAA-CCTTG-CG-CCTCCAATCTCGGGAGAAGAAGATAGACCAGTTCAAGTTGGGGGATGGAGTTATGCCTGCAAGTTTTAAAGTGTCTCATGATCCTGTTAGGAACTATGAGACTATAACTGCTGATTTCGGTGAAAGTGCTATTGGTAGAGTTGCTCCTGTTGATTCAGGGTTCTGGTGGATTATACTACTTCGTG-CATA-CA-CAAAGTCTACAGGGGACA-CTTCTTTGGCTGAGATGCCAGAATGCCAAAGGGGTATAAGGCTGATTCTTGAATTATGTCTCTCTGAAGGTTTTGATACATTCCCAACCCTGCTGTGCGCTGATGGATGCTCTATGATTGATCGCAGAATGGTCAGTCTGATGTACTACTATCCGCTCTTTATCGGTTTTTTAAACTAGATCTGACTTATGCTCATGCCTTGTTTTCTGTTTATTACATGCTTGATTTTCTACTTAATATTACATGATGACAGTGATGACAAGATATGAGATAGCTATCAACTGTTACTTCTAGAATAGTATAATTGACCAAATGCATATTTATAATCTGTCAAGATTTGGTTAGCCTACATACTTATTACGTGCTTGATTTTCTATTTCTCGTACATAATGACAGTGATTCTGATTCTGACTTAGGTAAGTTAAGCTTCAAATAGGAGTTCTGCTGAGATTTCACATCATTTGCTTGAAGTTAAGAAATAGGCAGTTGAGCTTTGTCTTGCTTTTTGGCGGGATTAGGCTTGGTGGGAGTCTGGTAGCACTGTGTCTGTCTTAGTATTAGTCGTATACACGTACTTTCTTGCGTTTGACCATCTGTTTTCTATTGTGTTTCAGTTACCGCTTGATTTCGATGTGCTATGTAGTGCTTTCCTTATTAATTGACGTGTTTTCTTCACTGCTGTATCTCCTTTTTCATAACTTCTTTGATGTGCTGCACTTTGAGCTGAGGGTCTTTCGGAAACAACCTCTCTACCTCCACGATGTAGGGGTAAGGTCTGTGTATACACTACCCTCCTGAGACTCCACTTGTGGGATTACACTGGACCAATAAGAAGACTTGTACTCTTTTCTCATATTCTCAATAAATTTGTGGGCATATTAAAATTCTCAATTATTGCAGTTCAACTTCCTTTAAAATATCCACTACTCACATGTCATAAGCACTTTGTTTCATATTGTTCCCAGGGTGTCTATGGCTATCCTATTGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGTTGTGATGCAATAATTAAACGACTTCATG</genome_strand>
        <mrna_strand>GAGTGGCATTCTTGATGAATGGTGAACCCTGATATAGTAAAGAATTTTCTTTTGAAAACCCTTGCCGCCCTCCAATCTCGGGAGAAGAAGATAGACCAGTTCAAGTTGGGGGATGGAGTTATGCCTGCAAGTTTTAAAGTGTCTCATGATCCTGTTAGGAACTATGAGACTATAACTGCTGATTTCGGTGAAAGTGCTATTGGTAGAGTTGCTCCTGTTGATTCAGGGTTCTGGTGGATTATACTACTTCGTGCCATACCACCAAAGTCTACAGGGGACACCTTCTTTGGCTGAGATGCCAGAATGCCAAAGGGGTATAAGGCTGATTCTTGAATTATGTCTCTCTGAAGGTTTTGATACATTCCCAACCCTGCTGTGCGCTGATGGATGCTCTATGATTGATCGCAGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTCTATGGCTATCCTATTGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGTTGTGATGCAATAATTAAACGACTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456863" ref_strand="+" ref_description="SGN-E456863 [cSTS-30-D22]">
      <seq>gatagaccagttcaagttgtgggatggagttatgcctgcaagttttaaagtatctcatgatcctgttaggaactatgagactataactgctgatttcggtgaaagtgctattggtagagttgctcctgttgattcacggttctggtggattatactacttcgtgcatacacaaagtctacaggggacacttctttggctgagatgccagaatgccaaaggggtataacgctgattcttgaattatgtctttctgaaggatttgatacattcccaaccctgctgtgtgctgatggatgctctatgattgatcgcataatgggtgtctatggttatcccattgaaatacaagcacttttttttatggcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="77738" stop="79541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78038" g_stop="78356" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78357" i_stop="79190" i_length="834">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.661" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79191" g_stop="79241" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="370" r_length="51" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E456863" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78038" e_stop="78356"/>
          <exon e_start="79191" e_stop="79241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGACCAGTTCAAGTTGGGGGATGGAGTTATGCCTGCAAGTTTTAAAGTGTCTCATGATCCTGTTAGGAACTATGAGACTATAACTGCTGATTTCGGTGAAAGTGCTATTGGTAGAGTTGCTCCTGTTGATTCAGGGTTCTGGTGGATTATACTACTTCGTGCATACACAAAGTCTACAGGGGACACTTCTTTGGCTGAGATGCCAGAATGCCAAAGGGGTATAAGGCTGATTCTTGAATTATGTCTCTCTGAAGGTTTTGATACATTCCCAACCCTGCTGTGCGCTGATGGATGCTCTATGATTGATCGCAGAATGGTCAGTCTGATGTACTACTATCCGCTCTTTATCGGTTTTTTAAACTAGATCTGACTTATGCTCATGCCTTGTTTTCTGTTTATTACATGCTTGATTTTCTACTTAATATTACATGATGACAGTGATGACAAGATATGAGATAGCTATCAACTGTTACTTCTAGAATAGTATAATTGACCAAATGCATATTTATAATCTGTCAAGATTTGGTTAGCCTACATACTTATTACGTGCTTGATTTTCTATTTCTCGTACATAATGACAGTGATTCTGATTCTGACTTAGGTAAGTTAAGCTTCAAATAGGAGTTCTGCTGAGATTTCACATCATTTGCTTGAAGTTAAGAAATAGGCAGTTGAGCTTTGTCTTGCTTTTTGGCGGGATTAGGCTTGGTGGGAGTCTGGTAGCACTGTGTCTGTCTTAGTATTAGTCGTATACACGTACTTTCTTGCGTTTGACCATCTGTTTTCTATTGTGTTTCAGTTACCGCTTGATTTCGATGTGCTATGTAGTGCTTTCCTTATTAATTGACGTGTTTTCTTCACTGCTGTATCTCCTTTTTCATAACTTCTTTGATGTGCTGCACTTTGAGCTGAGGGTCTTTCGGAAACAACCTCTCTACCTCCACGATGTAGGGGTAAGGTCTGTGTATACACTACCCTCCTGAGACTCCACTTGTGGGATTACACTGGACCAATAAGAAGACTTGTACTCTTTTCTCATATTCTCAATAAATTTGTGGGCATATTAAAATTCTCAATTATTGCAGTTCAACTTCCTTTAAAATATCCACTACTCACATGTCATAAGCACTTTGTTTCATATTGTTCCCAGGGTGTCTATGGCTATCCTATTGAAATACAAGCACTTTTCTTTATGGCCTTA</genome_strand>
        <mrna_strand>GATAGACCAGTTCAAGTTGTGGGATGGAGTTATGCCTGCAAGTTTTAAAGTATCTCATGATCCTGTTAGGAACTATGAGACTATAACTGCTGATTTCGGTGAAAGTGCTATTGGTAGAGTTGCTCCTGTTGATTCACGGTTCTGGTGGATTATACTACTTCGTGCATACACAAAGTCTACAGGGGACACTTCTTTGGCTGAGATGCCAGAATGCCAAAGGGGTATAACGCTGATTCTTGAATTATGTCTTTCTGAAGGATTTGATACATTCCCAACCCTGCTGTGTGCTGATGGATGCTCTATGATTGATCGCATAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTCTATGGTTATCCCATTGAAATACAAGCACTTTTTTTTATGGCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245464" ref_strand="+" ref_description="SGN-E245464 [cLEF-43-I23]">
      <seq>gaactatgagactataactgctgatttcggtgaaagtgctattggtagagttgctcctgtagattcagggttctggtggattatactacttcgtgcatacacaaagtctacaggggacacttctttggctgagatgccagaatgccaaaggggtataaggctgattcttgaattatgtctctctgaaggttttgatacattcccaaccctgctgtgcgctgatggatgctctatgattgatcgcagaatgggtgtctatggctatcctattgaaatacaagcacttttctttatggccttaagatgtgccttgtttctccttaaacacgacgaagaaaaccaagagtgttgtgatgcaataattaaacgacttcatgctttaagctttcacatgagaagttactattggctcgacataaaacaactgaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="77807" stop="79672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78107" g_stop="78356" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78357" i_stop="79190" i_length="834">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.661" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79191" g_stop="79372" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="432" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E245464" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78107" e_stop="78356"/>
          <exon e_start="79191" e_stop="79372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTATGAGACTATAACTGCTGATTTCGGTGAAAGTGCTATTGGTAGAGTTGCTCCTGTTGATTCAGGGTTCTGGTGGATTATACTACTTCGTGCATACACAAAGTCTACAGGGGACACTTCTTTGGCTGAGATGCCAGAATGCCAAAGGGGTATAAGGCTGATTCTTGAATTATGTCTCTCTGAAGGTTTTGATACATTCCCAACCCTGCTGTGCGCTGATGGATGCTCTATGATTGATCGCAGAATGGTCAGTCTGATGTACTACTATCCGCTCTTTATCGGTTTTTTAAACTAGATCTGACTTATGCTCATGCCTTGTTTTCTGTTTATTACATGCTTGATTTTCTACTTAATATTACATGATGACAGTGATGACAAGATATGAGATAGCTATCAACTGTTACTTCTAGAATAGTATAATTGACCAAATGCATATTTATAATCTGTCAAGATTTGGTTAGCCTACATACTTATTACGTGCTTGATTTTCTATTTCTCGTACATAATGACAGTGATTCTGATTCTGACTTAGGTAAGTTAAGCTTCAAATAGGAGTTCTGCTGAGATTTCACATCATTTGCTTGAAGTTAAGAAATAGGCAGTTGAGCTTTGTCTTGCTTTTTGGCGGGATTAGGCTTGGTGGGAGTCTGGTAGCACTGTGTCTGTCTTAGTATTAGTCGTATACACGTACTTTCTTGCGTTTGACCATCTGTTTTCTATTGTGTTTCAGTTACCGCTTGATTTCGATGTGCTATGTAGTGCTTTCCTTATTAATTGACGTGTTTTCTTCACTGCTGTATCTCCTTTTTCATAACTTCTTTGATGTGCTGCACTTTGAGCTGAGGGTCTTTCGGAAACAACCTCTCTACCTCCACGATGTAGGGGTAAGGTCTGTGTATACACTACCCTCCTGAGACTCCACTTGTGGGATTACACTGGACCAATAAGAAGACTTGTACTCTTTTCTCATATTCTCAATAAATTTGTGGGCATATTAAAATTCTCAATTATTGCAGTTCAACTTCCTTTAAAATATCCACTACTCACATGTCATAAGCACTTTGTTTCATATTGTTCCCAGGGTGTCTATGGCTATCCTATTGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGTTGTGATGCAATAATTAAACGACTTCATGCTTTAAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACTGAATGA</genome_strand>
        <mrna_strand>GAACTATGAGACTATAACTGCTGATTTCGGTGAAAGTGCTATTGGTAGAGTTGCTCCTGTAGATTCAGGGTTCTGGTGGATTATACTACTTCGTGCATACACAAAGTCTACAGGGGACACTTCTTTGGCTGAGATGCCAGAATGCCAAAGGGGTATAAGGCTGATTCTTGAATTATGTCTCTCTGAAGGTTTTGATACATTCCCAACCCTGCTGTGCGCTGATGGATGCTCTATGATTGATCGCAGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTCTATGGCTATCCTATTGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGTTGTGATGCAATAATTAAACGACTTCATGCTTTAAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACTGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606673" ref_strand="+" ref_description="SGN-E606673 [22622]">
      <seq>cccaaccctgctgtgtgctgatggatgctctatgattgatcgcagaatgggtgtctatggttatcccattgaaatacaagcacttttctttatggccttaagatgtgccttgtttctccttaaacacgacgaagaaaacagagagtgttgtgatgcaataattaaacgccttcatgctttgagctttcacatgagaagttactattggctcgacataaaacaactgaatgatatataccgctacaaaacagaagagtactctcacaccgcagtaaacaagtttaatgtgatgccagattcccttccggagtgggtttttgatttcatgccaactcgtggtggttacttcatcggaaatgttagtcctgctcacatggacttccgttggttttgtttgggaaactgtatttcaatcttgtcatctttggctacacctgagcaagcttccgccataatggatctagttgaatcaagatggcaagagctagttggagaaatgccgctgaaaatctgttatcccgctatggaaggtcatgaatggagaattgtaactggatgcgatcctaaaaacactagttggagttaccacaatggtggaacttggccagttcttctgtggctccttactgncagcagctatcaaagactggtcgaccccaaaatagcacgacggggccattgaactaactgaatcgggtttactaaaagatagttgggccagagtatttacgatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="78008" stop="80555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78308" g_stop="78356" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78357" i_stop="79190" i_length="834">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.661" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79191" g_stop="79749" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="608" r_length="559" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79750" i_stop="80134" i_length="385">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80135" g_stop="80257" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="737" r_length="129" r_score="0.854"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E606673" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78308" e_stop="78356"/>
          <exon e_start="79191" e_stop="79749"/>
          <exon e_start="80135" e_stop="80257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACCCTGCTGTGCGCTGATGGATGCTCTATGATTGATCGCAGAATGGTCAGTCTGATGTACTACTATCCGCTCTTTATCGGTTTTTTAAACTAGATCTGACTTATGCTCATGCCTTGTTTTCTGTTTATTACATGCTTGATTTTCTACTTAATATTACATGATGACAGTGATGACAAGATATGAGATAGCTATCAACTGTTACTTCTAGAATAGTATAATTGACCAAATGCATATTTATAATCTGTCAAGATTTGGTTAGCCTACATACTTATTACGTGCTTGATTTTCTATTTCTCGTACATAATGACAGTGATTCTGATTCTGACTTAGGTAAGTTAAGCTTCAAATAGGAGTTCTGCTGAGATTTCACATCATTTGCTTGAAGTTAAGAAATAGGCAGTTGAGCTTTGTCTTGCTTTTTGGCGGGATTAGGCTTGGTGGGAGTCTGGTAGCACTGTGTCTGTCTTAGTATTAGTCGTATACACGTACTTTCTTGCGTTTGACCATCTGTTTTCTATTGTGTTTCAGTTACCGCTTGATTTCGATGTGCTATGTAGTGCTTTCCTTATTAATTGACGTGTTTTCTTCACTGCTGTATCTCCTTTTTCATAACTTCTTTGATGTGCTGCACTTTGAGCTGAGGGTCTTTCGGAAACAACCTCTCTACCTCCACGATGTAGGGGTAAGGTCTGTGTATACACTACCCTCCTGAGACTCCACTTGTGGGATTACACTGGACCAATAAGAAGACTTGTACTCTTTTCTCATATTCTCAATAAATTTGTGGGCATATTAAAATTCTCAATTATTGCAGTTCAACTTCCTTTAAAATATCCACTACTCACATGTCATAAGCACTTTGTTTCATATTGTTCCCAGGGTGTCTATGGCTATCCTATTGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGTTGTGATGCAATAATTAAACGACTTCATGCTTTAAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACTGAATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAGGTTATAGTTTCTTCCTTCTTATATAACACCAAAAGTACTTCATTCTATTTAGCAATAGTTTGCTATGTCATCTCGCATCACGATGACCAGTATATCTGTCTACTTTTTGGTAGCCTATCATGTCTCCCTATATTCCATTTTATGCATCAATCTTGCTCTTTTAGTCTATTCCGAAAAGAATGATGCCTTTCTATATTTAAAAACCCTTAGTGATACGGTTTATAGCCACAAAAAATGTCATGACATGTTTAAGATCACGTGTTGAACTCTGTGCTCAGTCACACTTTCACATAAAATGAAACCGAGGGAGTACTCTTTTCATGTTCTGCACCGTGACATTTACAAACTTATGCTAATACTGATTTGCCTGGTTTTTTGTGTCTAGTTCTTCTGTGGCTCCTTACTG-CAGCAGCTATC-AAGACTGGTCGACCCC-AAATAGCACGAC-GGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCT-GGCCAGAGTA-TTACGACGGAA</genome_strand>
        <mrna_strand>CCCAACCCTGCTGTGTGCTGATGGATGCTCTATGATTGATCGCAGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTCTATGGTTATCCCATTGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCCTTAAACACGACGAAGAAAACAGAGAGTGTTGTGATGCAATAATTAAACGCCTTCATGCTTTGAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACTGAATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACCGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGAAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTAGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCCGCTATGGAAGGTCATGAATGGAGAATTGTAACTGGATGCGATCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGAACTTGGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTGTGGCTCCTTACTGNCAGCAGCTATCAAAGACTGGTCGACCCCAAAATAGCACGACGGGGCCATTGAACTAACTGAATCGGGTTTACTAAAAGATAGTTGGGCCAGAGTATTTACGATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710038" ref_strand="+" ref_description="SGN-E710038 [FA54AB03]">
      <seq>cgcgcagaatgggtgtctatggctatcctattgaaatacaagcacttttctttatggccttaagatgtgccttgtttctccttaaacacgacgaagaaaaccaagagtgttgtgatgcaataattaaacgacttcatgctttgagctttcacatgagaagttactattggctcgacataaaacaactgaatgatatataccgctacaaaacggaagagtactctcacactgcagtaaacaagtttaatgtgatgccagattcccttccggagtgggtttttgatttcatgccaactcgtggtggttacttcatcggaaatgttagtcctgctcacatggacttccgttggttttgtttgggtaactgtatttcaatcttgtcatctttggctacacctgagcaagcttccgccataatggatctcgttgaatcaagatggcgagagctagttggagaaatgccgctgaaaatctgttatcctgctatggaaggccatgaatggagaattgtaacaggatgcgaccctaaaaacactagttggagttaccacaatggtggcacttggccagttcttctgtggctccttactgcagcagctatcaagactggtcgaccccaaatagcacgacgggccattgaactagctgaatcgcgtttactaaaagatagctggccagagtattacgacggaaagcttggtcgatttattggaaagcaggcgcgtaagttccagacatggtccattgctggttacttggtagctagaatgatgctggaagatccatctcatttgggtatgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="78890" stop="80668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79191" g_stop="79749" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="570" r_length="559" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79750" i_stop="80134" i_length="385">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80135" g_stop="80368" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="804" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E710038" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79191" e_stop="79749"/>
          <exon e_start="80135" e_stop="80368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTCTATGGCTATCCTATTGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGTTGTGATGCAATAATTAAACGACTTCATGCTTTAAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACTGAATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAGGTTATAGTTTCTTCCTTCTTATATAACACCAAAAGTACTTCATTCTATTTAGCAATAGTTTGCTATGTCATCTCGCATCACGATGACCAGTATATCTGTCTACTTTTTGGTAGCCTATCATGTCTCCCTATATTCCATTTTATGCATCAATCTTGCTCTTTTAGTCTATTCCGAAAAGAATGATGCCTTTCTATATTTAAAAACCCTTAGTGATACGGTTTATAGCCACAAAAAATGTCATGACATGTTTAAGATCACGTGTTGAACTCTGTGCTCAGTCACACTTTCACATAAAATGAAACCGAGGGAGTACTCTTTTCATGTTCTGCACCGTGACATTTACAAACTTATGCTAATACTGATTTGCCTGGTTTTTTGTGTCTAGTTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATAT</genome_strand>
        <mrna_strand>GGTGTCTATGGCTATCCTATTGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGTTGTGATGCAATAATTAAACGACTTCATGCTTTGAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACTGAATGATATATACCGCTACAAAACGGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCGAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282307" ref_strand="+" ref_description="SGN-E282307 [cLER-18-A9]">
      <seq>tgaaatacaagcacttttctttatggccttaagatgtgccttgtttctccttaaacacgacgaagaaaaccaagagtgttgtgatgcaataattaaacgacttcatgctttaagctttcacatgagaagttactattggctcgacataaaacaactgaatgatatataccgctacaaaacagaagagtactctcacactgcagtaaacaagtttaatgtgatgccagattcccttccggagtgggtttttgatttcatgccaactcgtggtggttacttcatcggaaatgttagtcctgctcacatggacttccgttggttttgtttgggtaactgtatttcaatcttgtcatctttggctacacctgagcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="78911" stop="79885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79211" g_stop="79585" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E282307" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79211" e_stop="79585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGTTGTGATGCAATAATTAAACGACTTCATGCTTTAAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACTGAATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGC</genome_strand>
        <mrna_strand>TGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGTTGTGATGCAATAATTAAACGACTTCATGCTTTAAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACTGAATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246669" ref_strand="+" ref_description="SGN-E246669 [cLEF-45-C6]">
      <seq>cttgtttctccttaaacacgacgaagaaaaccaagagtggggtgatgcgataattaaacgacttcatgctttaagctttcacatgagaagttactattggctcgacataaaacaactgaatgatatataccgctacaaaacagaagagtactctcacactgcagtaaacaagtttaatgtgatgccagattcccttccggagtgggtttttgatttcatgccaactcgtggtggttacttcatcggaaatgttagtcctgctcacatggacttccgttggttttgtttgggtaactgtatttcaatcttgtcatctttggctacacctgagcaagcttccgccataatggatctcgttgaatcaagatggcaagagctagttggagaaatgccgctgaaaatctgttatcctgctatggaaggccatgaatggagaattgtaacaggatgcgaccctaaaaacactagttggagttaccacaatggtggcacttggccagttcttctgtggctccttactgcagcagctatcaagactggtcgacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="78950" stop="80482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79250" g_stop="79749" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79750" i_stop="80134" i_length="385">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80135" g_stop="80182" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="548" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E246669" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79250" e_stop="79749"/>
          <exon e_start="80135" e_stop="80182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGTTGTGATGCAATAATTAAACGACTTCATGCTTTAAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACTGAATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAGGTTATAGTTTCTTCCTTCTTATATAACACCAAAAGTACTTCATTCTATTTAGCAATAGTTTGCTATGTCATCTCGCATCACGATGACCAGTATATCTGTCTACTTTTTGGTAGCCTATCATGTCTCCCTATATTCCATTTTATGCATCAATCTTGCTCTTTTAGTCTATTCCGAAAAGAATGATGCCTTTCTATATTTAAAAACCCTTAGTGATACGGTTTATAGCCACAAAAAATGTCATGACATGTTTAAGATCACGTGTTGAACTCTGTGCTCAGTCACACTTTCACATAAAATGAAACCGAGGGAGTACTCTTTTCATGTTCTGCACCGTGACATTTACAAACTTATGCTAATACTGATTTGCCTGGTTTTTTGTGTCTAGTTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCC</genome_strand>
        <mrna_strand>CTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGGGGTGATGCGATAATTAAACGACTTCATGCTTTAAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACTGAATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590906" ref_strand="+" ref_description="SGN-E590906 [44702]">
      <seq>aattaaacgccttcatgctttgagctttcacatgagaagttactattggctcgatataaaacaactngaatgatatataccgctacaaaacggaagagtactctcacaccgcagtaaacaagtttaatgtgatgccagattcccttccggagtgggtttttgatttcatgccaactcgtggtggttacttcatcggaaatgtagtcctgctcacatggacttccgtggttttgtttgggtaactgtatttcaatcttgtcatctttggctacacctgagcaagcttccgccataatggatctcgttgaatcaagatggcaagagctagttggagaaatgccactngaaaatctgttatcccgctatggaaggtcatgaatggagaattgtaacagggatgcgatcctaaaaacactagttggagttaccacaatggtggaacttggccagttcttctgtggctccttactgcagcagctatcaagactggtcgaccccaaattagcacgacggggccattgaaactagctgaatcgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="79001" stop="80520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79301" g_stop="79749" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79750" i_stop="80134" i_length="385">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80135" g_stop="80220" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="539" r_length="89" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E590906" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79301" e_stop="79749"/>
          <exon e_start="80135" e_stop="80220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAACGACTTCATGCTTTAAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACT-GAATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCT-GAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACA-GGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAGGTTATAGTTTCTTCCTTCTTATATAACACCAAAAGTACTTCATTCTATTTAGCAATAGTTTGCTATGTCATCTCGCATCACGATGACCAGTATATCTGTCTACTTTTTGGTAGCCTATCATGTCTCCCTATATTCCATTTTATGCATCAATCTTGCTCTTTTAGTCTATTCCGAAAAGAATGATGCCTTTCTATATTTAAAAACCCTTAGTGATACGGTTTATAGCCACAAAAAATGTCATGACATGTTTAAGATCACGTGTTGAACTCTGTGCTCAGTCACACTTTCACATAAAATGAAACCGAGGGAGTACTCTTTTCATGTTCTGCACCGTGACATTTACAAACTTATGCTAATACTGATTTGCCTGGTTTTTTGTGTCTAGTTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAA-TAGCACGAC-GGGCCATTG-AACTAGCTGAATCGCGT</genome_strand>
        <mrna_strand>AATTAAACGCCTTCATGCTTTGAGCTTTCACATGAGAAGTTACTATTGGCTCGATATAAAACAACTNGAATGATATATACCGCTACAAAACGGAAGAGTACTCTCACACCGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATG-TAGTCCTGCTCACATGGACTTCCG-TGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCACTNGAAAATCTGTTATCCCGCTATGGAAGGTCATGAATGGAGAATTGTAACAGGGATGCGATCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGAACTTGGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATTAGCACGACGGGGCCATTGAAACTAGCTGAATCGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377720" ref_strand="+" ref_description="SGN-E377720 [TUS-20-K22]">
      <seq>atgatatataccgctacaaaacagaagagtactctcacactgcagtaaacaagtttaatgtgatgccagattcccttccggagtgggtttttgatttcatgccaactcgtggtggttacttcatcggaaatgttagtcctgctcacatggacttccgttggttttgtttgggtaactgtatttcaatcttgtcatctttggctacacctgagcaagcttccgccataatggatctcgttgaatcaagatggcaagagctagttggagaaatgccgctgaaaatctgttatcctgctatggaaggccatgaatggagaattgtaacaggatgcgaccctaaaaacactagttggagttaccacaatggtggcacttggccagttcttctgtggctccttactgcagcagctatcaagactggtcgaccccaaatagcacgacgggccattgaactagctgaatcgcgtttactaaaagatagctggccagagtattacgacggaaagcttggtcgatttattggaaagcaggcgcgtaagttccagacatggtccattgctggttacttggtagctagaatgatgctggaagatccatctcatttgggtatgatatcacttgaagaaaataaacagatgaaacctaccatgaaaagatctgcttcttggacttgttaatattccttgtacacaaatttttttttcaaatgccatgcttttttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="79069" stop="80785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79369" g_stop="79749" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79750" i_stop="80134" i_length="385">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80135" g_stop="80483" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="732" r_length="351" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E377720" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79369" e_stop="79749"/>
          <exon e_start="80135" e_stop="80483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAGGTTATAGTTTCTTCCTTCTTATATAACACCAAAAGTACTTCATTCTATTTAGCAATAGTTTGCTATGTCATCTCGCATCACGATGACCAGTATATCTGTCTACTTTTTGGTAGCCTATCATGTCTCCCTATATTCCATTTTATGCATCAATCTTGCTCTTTTAGTCTATTCCGAAAAGAATGATGCCTTTCTATATTTAAAAACCCTTAGTGATACGGTTTATAGCCACAAAAAATGTCATGACATGTTTAAGATCACGTGTTGAACTCTGTGCTCAGTCACACTTTCACATAAAATGAAACCGAGGGAGTACTCTTTTCATGTTCTGCACCGTGACATTTACAAACTTATGCTAATACTGATTTGCCTGGTTTTTTGTGTCTAGTTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATA-TCCTTGTACACAAA-TTTTCTTTCGAATGCCATGCTTTTTTTTTCTCTCTTT</genome_strand>
        <mrna_strand>ATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAAATAAACAGATGAAACCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATTCCTTGTACACAAATTTTTTTTTCAAATGCCATGCTTTTTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232098" ref_strand="+" ref_description="SGN-E232098 [cLED-7-B14]">
      <seq>atgatatataccgctacaaaacagaagagtactctcacactgcagtaaacaagtttaatgtgatgccagattcccttccggagtgggtttttgatttcatgccaactcgtggtggttacttcatcggaaatgttagtcctgctcacatggacttccgttggttttgtttgggtaactgtatttcaatcttgtcatctttggctacacctgagcaagcttccgccataatggatctcgttgaatcaagatggcaagagctagttggagaaatgccgctgaaaatctgttatcctgctatggaaggccatgaatggagaattgtaacaggatgcgaccctaaaaacactagttggagttaccacaatggtggcacttggccagttcttctgtggctccttactgcagcagctatcaagactggtcgaccccaaatagcacgacgggccattgaactagctgaatcgcgtttactaaaagatagctggccagagtattacgacggaaagcttggtcgatttattggaaagcaggcgcgtaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="79069" stop="80594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79369" g_stop="79749" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79750" i_stop="80134" i_length="385">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80135" g_stop="80294" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="541" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E232098" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79369" e_stop="79749"/>
          <exon e_start="80135" e_stop="80294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAGGTTATAGTTTCTTCCTTCTTATATAACACCAAAAGTACTTCATTCTATTTAGCAATAGTTTGCTATGTCATCTCGCATCACGATGACCAGTATATCTGTCTACTTTTTGGTAGCCTATCATGTCTCCCTATATTCCATTTTATGCATCAATCTTGCTCTTTTAGTCTATTCCGAAAAGAATGATGCCTTTCTATATTTAAAAACCCTTAGTGATACGGTTTATAGCCACAAAAAATGTCATGACATGTTTAAGATCACGTGTTGAACTCTGTGCTCAGTCACACTTTCACATAAAATGAAACCGAGGGAGTACTCTTTTCATGTTCTGCACCGTGACATTTACAAACTTATGCTAATACTGATTTGCCTGGTTTTTTGTGTCTAGTTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTT</genome_strand>
        <mrna_strand>ATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241362" ref_strand="+" ref_description="SGN-E241362 [cLED-28-D5]">
      <seq>atgatatataccgctacaaaacagaagagtactctcacactgcagtaaacaagtttaatgtgatgccagattcccttccggagtgggtttttgatttcatgccaactcgtggtggttacttcatcggaaatgttagtcctgctcacatggacttccgttggttttgtttgggtaactgtatttcaatcttgtcatctttggctacacctgagcaagcttccgccataatggatctcgttgaatcaagatggcaagagctagttggagaaatgccgctgaaaatctgttatcctgctatggaaggccatgaatggagaattgtaacaggatgcgaccctaaaaacactagttggagttaccacaatggtggcacttggccagttcttctgtggctccttactgcagcagctatcaagactggtcgaccccaaatagcacgacgggccattgaactagctgaatcgcgtttactaaaagatagctggccagagtattacgacggaaagcttggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="79069" stop="80567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79369" g_stop="79749" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79750" i_stop="80134" i_length="385">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80135" g_stop="80267" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="514" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E241362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79369" e_stop="79749"/>
          <exon e_start="80135" e_stop="80267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAGGTTATAGTTTCTTCCTTCTTATATAACACCAAAAGTACTTCATTCTATTTAGCAATAGTTTGCTATGTCATCTCGCATCACGATGACCAGTATATCTGTCTACTTTTTGGTAGCCTATCATGTCTCCCTATATTCCATTTTATGCATCAATCTTGCTCTTTTAGTCTATTCCGAAAAGAATGATGCCTTTCTATATTTAAAAACCCTTAGTGATACGGTTTATAGCCACAAAAAATGTCATGACATGTTTAAGATCACGTGTTGAACTCTGTGCTCAGTCACACTTTCACATAAAATGAAACCGAGGGAGTACTCTTTTCATGTTCTGCACCGTGACATTTACAAACTTATGCTAATACTGATTTGCCTGGTTTTTTGTGTCTAGTTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCG</genome_strand>
        <mrna_strand>ATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578544" ref_strand="+" ref_description="SGN-E578544 [85662]">
      <seq>aaaacggaagagtactctcacaccgcagtaaacaagtttaatgttattgcagattccctttcggaattggtttttgaattccttgccacttcgttgttgttaactccaccgaaaatgtaattcctgctcacttggacttccgttggtttggttggggtacctgtttttcaatcttgtcatctttggctacacctgagcaagcttccgccataatggatctcgttgaatcaagatggcaagagctagttggagaaatgccactgaaaatctgttatcccgctatggaaggtcatgaatggagaattgtaacaggatgcgatcctaaaaacactagttggagttaccacaatggtggaacttggccagttcttctgtggctccttactgcagcagctatcaagactggtcgaccccaaatagcacgacgggccattgaactagctgaatcgcgtttactaaaagatagctggccagagtattacgatgggaagcttggtcgatttatcggaaagcaggcccgtaagttccagacatggtccattgctggttacttggtagctagaatgatgctggaagatccatctcatttgggtatgatatcacttgaagaagataaacagatgaagcctaccatgaaaagatctgcttcttggacttgttaatatccttgtacacaatttttctttcgaatgccatgtttttttttctttttcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="79086" stop="80785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79386" g_stop="79749" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79750" i_stop="80134" i_length="385">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80135" g_stop="80485" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="718" r_length="352" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E578544" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79386" e_stop="79749"/>
          <exon e_start="80135" e_stop="80485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTG-ATTTCATGCCAACTCGTGGTGGTT-ACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAGGTTATAGTTTCTTCCTTCTTATATAACACCAAAAGTACTTCATTCTATTTAGCAATAGTTTGCTATGTCATCTCGCATCACGATGACCAGTATATCTGTCTACTTTTTGGTAGCCTATCATGTCTCCCTATATTCCATTTTATGCATCAATCTTGCTCTTTTAGTCTATTCCGAAAAGAATGATGCCTTTCTATATTTAAAAACCCTTAGTGATACGGTTTATAGCCACAAAAAATGTCATGACATGTTTAAGATCACGTGTTGAACTCTGTGCTCAGTCACACTTTCACATAAAATGAAACCGAGGGAGTACTCTTTTCATGTTCTGCACCGTGACATTTACAAACTTATGCTAATACTGATTTGCCTGGTTTTTTGTGTCTAGTTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAAATTTTCTTTCGAATGCCATGCTTTTTTTT-TCTCTCTTTTT</genome_strand>
        <mrna_strand>AAAACGGAAGAGTACTCTCACACCGCAGTAAACAAGTTTAATGTTATTGCAGATTCCCTTTCGGAATTGGTTTTTGAATTCCTTGCCACTTCGTTGTTGTTAACTCCACCGAAAATGTAATTCCTGCTCACTTGGACTTCCGTTGGTTTGGTTGGGGTACCTGTTTTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCACTGAAAATCTGTTATCCCGCTATGGAAGGTCATGAATGGAGAATTGTAACAGGATGCGATCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGAACTTGGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGATGGGAAGCTTGGTCGATTTATCGGAAAGCAGGCCCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAATTTTTCTTTCGAATGCCATGTTTTTTTTTCTTTTTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605350" ref_strand="-" ref_description="SGN-E605350 [21269]">
      <seq>tcatctttggctacacctgagcaagctttccgccataatggatctcgttgaatcaagatggcaagagctagttggagaaatgccactgaaaaatctgtttatcccgctatggaaggtcatgaatggagaattgtaacaggatgcgatcctaaaaaacactagttggagttaccacaatggtggaacttggccagttcttctgtggctccttactgcagcagctatcaagactggtcgaccccaaatagcacgacgggccattgaactagctgaatcgcgtttactaaaagatagctggccagagtattacgatgggaagcttggtcgatttatcggaaagcaggcccgtaagttccagacatggtccattgctggttacttggtagctagaatgatgctggaagatccatctcatttgggtatgatatcacttgaagaagataaacagatgaagcctaccatgaaaagatctgcttcttggaccttgttaatatccttgtacacaatttttctttcgaatgccatgtttttttttcttttttttttttgcaattcgtaaacattctcttttagtttgtcgcaaaaatgttgaattttctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="79260" stop="80839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79560" g_stop="79749" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79750" i_stop="80134" i_length="385">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80135" g_stop="80539" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="602" r_length="408" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E605350" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605350" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79560" e_stop="79749"/>
          <exon e_start="80135" e_stop="80539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTTGGCTACACCTGAGCAAGC-TTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTG-AAAATCTG-TTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCT-AAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAGGTTATAGTTTCTTCCTTCTTATATAACACCAAAAGTACTTCATTCTATTTAGCAATAGTTTGCTATGTCATCTCGCATCACGATGACCAGTATATCTGTCTACTTTTTGGTAGCCTATCATGTCTCCCTATATTCCATTTTATGCATCAATCTTGCTCTTTTAGTCTATTCCGAAAAGAATGATGCCTTTCTATATTTAAAAACCCTTAGTGATACGGTTTATAGCCACAAAAAATGTCATGACATGTTTAAGATCACGTGTTGAACTCTGTGCTCAGTCACACTTTCACATAAAATGAAACCGAGGGAGTACTCTTTTCATGTTCTGCACCGTGACATTTACAAACTTATGCTAATACTGATTTGCCTGGTTTTTTGTGTCTAGTTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGA-CTTGTTAATATCCTTGTACACAAATTTTCTTTCGAATGCCATG-CTTTTTTT-TTCTCTCTTTTTGCAATTCGTAAACACTCTCTTTTAGTTTGTCGCAAAAATGTTGAATTTTTTATG</genome_strand>
        <mrna_strand>TCATCTTTGGCTACACCTGAGCAAGCTTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCACTGAAAAATCTGTTTATCCCGCTATGGAAGGTCATGAATGGAGAATTGTAACAGGATGCGATCCTAAAAAACACTAGTTGGAGTTACCACAATGGTGGAACTTGGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGATGGGAAGCTTGGTCGATTTATCGGAAAGCAGGCCCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACCTTGTTAATATCCTTGTACACAATTTTTCTTTCGAATGCCATGTTTTTTTTTCTTTTTTTTTTTTGCAATTCGTAAACATTCTCTTTTAGTTTGTCGCAAAAATGTTGAATTTTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356850" ref_strand="-" ref_description="SGN-E356850 [cTOS-22-K3]">
      <seq>gaaagtgaaattactatatagttgaagggaaaataaaatatttaaggccgctgaaaatctgttatcctgctatggaaggccatgaatggagaattgtaacaggatgcgaccctaaaaacactagttggagttaccacaatggtggcacttggccagttcttctgtggctccttactgcagcagctatcaagactggtcgaccccaaatagcacgacgggccattgaactagctgaatcgcgtttactaaaagatagctggccagagtattacgacggaaagcttggtcgatttattggaaagcaggcgcgtaagttccagacatggtccattgctggttacttggtagctagaatgatgctggaagatccatctcatttgggtatgatatcacttgaagaagataaacagatgaagcctaccatgaaaagatctgcttcttggacttgttaatatccttgtacacaaattttctttcgaatgccatgctttttttttctctctttttgcaattcgtaaacactctcttttagtttgtcgcaaaaatgttgaattttttatgaattggctacgagattgtacacttcactcctatttttttccagttaatctggttttcgtctaagagtgttcgtcgaatgccaatagatgtgtgttgttagctgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="79337" stop="82142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79636" g_stop="79749" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="156" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79750" i_stop="80134" i_length="385">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80135" g_stop="80603" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="625" r_length="469" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80604" i_stop="81802" i_length="1199">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.89"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81803" g_stop="81848" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="671" r_length="46" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E356850" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356850" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79636" e_stop="79749"/>
          <exon e_start="80135" e_stop="80603"/>
          <exon e_start="81803" e_stop="81848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAGGTTATAGTTTCTTCCTTCTTATATAACACCAAAAGTACTTCATTCTATTTAGCAATAGTTTGCTATGTCATCTCGCATCACGATGACCAGTATATCTGTCTACTTTTTGGTAGCCTATCATGTCTCCCTATATTCCATTTTATGCATCAATCTTGCTCTTTTAGTCTATTCCGAAAAGAATGATGCCTTTCTATATTTAAAAACCCTTAGTGATACGGTTTATAGCCACAAAAAATGTCATGACATGTTTAAGATCACGTGTTGAACTCTGTGCTCAGTCACACTTTCACATAAAATGAAACCGAGGGAGTACTCTTTTCATGTTCTGCACCGTGACATTTACAAACTTATGCTAATACTGATTTGCCTGGTTTTTTGTGTCTAGTTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAAATTTTCTTTCGAATGCCATGCTTTTTTTTTCTCTCTTTTTGCAATTCGTAAACACTCTCTTTTAGTTTGTCGCAAAAATGTTGAATTTTTTATGAATTGGCTACGAGATTGTACACTTCACTCCTATTTTTTTCCAGTTAATCTGGTTTTCGTCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGTTATCCCTGGATAGCGCCTTGCCGGACCGCACCACCATCATGAATTTCCGCCACCTGCTGGAGCAGCATCAACTGGCCCGCCAATTGTTCAAGACCATCAATCGCTGGCTGGCCGAAGCAGGCGTCATGATGACTCAAGGCACCTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTGGCATGAAGGCCCACATTGGTGTCGATGCCAAGAGTGGCCTGACCCACAGCCTGGTCACCACCGCGGCCAACGAGCATGACCTCAATCAGCTGGGTAATCTGCTGCATGGAGAGGAGCAATTTGTCTCAGCCGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCCGAGGTGGATGTGGACTGGCTGATCGCCGAGCGCCCCGGCAAGGTAAGAACCTTGAAACAGCATCCACGCAAGAACAAAACGGCCATCAACATCGAATACATGAAAGCCAGCATCCGGGCCAGGGTGGAGCACCCATTTCGCATCATCAAGCGACAGTTCGGCTTCGTGAAAGCCAGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGAGTGTTCGTCGAATGCCAATAGATGTGTGTTGTTAGCTGATCTACT</genome_strand>
        <mrna_strand>TAAGGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAAATTTTCTTTCGAATGCCATGCTTTTTTTTTCTCTCTTTTTGCAATTCGTAAACACTCTCTTTTAGTTTGTCGCAAAAATGTTGAATTTTTTATGAATTGGCTACGAGATTGTACACTTCACTCCTATTTTTTTCCAGTTAATCTGGTTTTCGTCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTCGTCGAATGCCAATAGATGTGTGTTGTTAGCTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568061" ref_strand="-" ref_description="SGN-E568061 [12284]">
      <seq>tgaatggagaattgtaactggatgccgatccttgaaaacactagttggagttaccacaatggtggaaccttgcccagttcttctgtggctccttactgcagcagctatcaagactggtcgaccccaaatagcacgacgggccattgaactagctgaatcgcgtttactaaaagatagctggccagagtattacgatgggaagcttggtcgatttatcggaaagcaggcccgtaagttccagacatggtccattgctggttacttggtagctagaatgatgctggaagatccatctcatttgggtatgatatcacttgaagaagataaacagatgaagcctaccatgaaaagatctgcttcttggacttgttaatatccttgtacacaatttttctttcgaatgccatgtttttttttctttttcttttttgcaattcgtaaacattctcttttagtttgtcgcaaaaatgttgaattttctatgaattggctaccgagattgtatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="79376" stop="80863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79676" g_stop="79749" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.851"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79750" i_stop="80134" i_length="385">
            <donor d_prob="0.996" d_score="0.83"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80135" g_stop="80564" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="510" r_length="433" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E568061" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568061" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79676" e_stop="79749"/>
          <exon e_start="80135" e_stop="80564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATGGAGAATTGTAACAGGATG-CGA-CCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCA-CTTGGCCAGGTTATAGTTTCTTCCTTCTTATATAACACCAAAAGTACTTCATTCTATTTAGCAATAGTTTGCTATGTCATCTCGCATCACGATGACCAGTATATCTGTCTACTTTTTGGTAGCCTATCATGTCTCCCTATATTCCATTTTATGCATCAATCTTGCTCTTTTAGTCTATTCCGAAAAGAATGATGCCTTTCTATATTTAAAAACCCTTAGTGATACGGTTTATAGCCACAAAAAATGTCATGACATGTTTAAGATCACGTGTTGAACTCTGTGCTCAGTCACACTTTCACATAAAATGAAACCGAGGGAGTACTCTTTTCATGTTCTGCACCGTGACATTTACAAACTTATGCTAATACTGATTTGCCTGGTTTTTTGTGTCTAGTTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAAATTTTCTTTCGAATGCCATGCTTTTTTTT-TCTCTC-TTTTTGCAATTCGTAAACACTCTCTTTTAGTTTGTCGCAAAAATGTTGAATTTTTTATGAATTGGCTA-CGAGATTGTACACTTC</genome_strand>
        <mrna_strand>TGAATGGAGAATTGTAACTGGATGCCGATCCTTGAAAACACTAGTTGGAGTTACCACAATGGTGGAACCTTGCCCAG.................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGATGGGAAGCTTGGTCGATTTATCGGAAAGCAGGCCCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAATTTTTCTTTCGAATGCCATGTTTTTTTTTCTTTTTCTTTTTTGCAATTCGTAAACATTCTCTTTTAGTTTGTCGCAAAAATGTTGAATTTTCTATGAATTGGCTACCGAGATTGTATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418697" ref_strand="-" ref_description="SGN-E418697 [STM-28-I19]">
      <seq>aggatgcgatcctaaaaacactagttggagttaccacaatggtggaacttggccagttcttctgtggctccttactgcagcagctatcaagactggtcgaccccaaatagcacgacgggccattgaactagtgaaatcgcgtttactaaaagatagctggccagagtattacgatgggaagcttggtcgatttatcggaaagcaggcccgtaagttccagacatggtccattgctggttacttggtagctagaatgatgctggaagatccatctcatttgggtaatgatatcacttgaagaagataaacagatgaagcctaccatgaaaagatctgcttcttggacttgttaatatccttgtacacaatttttctttcgaatgccatgtttttttttctttttcttttttgcaattcgtaaacattctcttttagtttgtcgcaaaaatgttgaattttctatgaattggctacgagattgtacacttccttcgttttttccaataaatctggttttcgtctcccccaaaaaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="79394" stop="80876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79694" g_stop="79749" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79750" i_stop="80134" i_length="385">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80135" g_stop="80596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="518" r_length="462" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E418697" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418697" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79694" e_stop="79749"/>
          <exon e_start="80135" e_stop="80596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAGGTTATAGTTTCTTCCTTCTTATATAACACCAAAAGTACTTCATTCTATTTAGCAATAGTTTGCTATGTCATCTCGCATCACGATGACCAGTATATCTGTCTACTTTTTGGTAGCCTATCATGTCTCCCTATATTCCATTTTATGCATCAATCTTGCTCTTTTAGTCTATTCCGAAAAGAATGATGCCTTTCTATATTTAAAAACCCTTAGTGATACGGTTTATAGCCACAAAAAATGTCATGACATGTTTAAGATCACGTGTTGAACTCTGTGCTCAGTCACACTTTCACATAAAATGAAACCGAGGGAGTACTCTTTTCATGTTCTGCACCGTGACATTTACAAACTTATGCTAATACTGATTTGCCTGGTTTTTTGTGTCTAGTTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGT-ATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAAATTTTCTTTCGAATGCCATGCTTTTTTTT-TCTCTC-TTTTTGCAATTCGTAAACACTCTCTTTTAGTTTGTCGCAAAAATGTTGAATTTTTTATGAATTGGCTACGAGATTGTACACTTCACTCCTATTTTTTTCCAGTTAATCTGGTTTTC</genome_strand>
        <mrna_strand>AGGATGCGATCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGAACTTGGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGTGAAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGATGGGAAGCTTGGTCGATTTATCGGAAAGCAGGCCCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTAATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAATTTTTCTTTCGAATGCCATGTTTTTTTTTCTTTTTCTTTTTTGCAATTCGTAAACATTCTCTTTTAGTTTGTCGCAAAAATGTTGAATTTTCTATGAATTGGCTACGAGATTGTACACTTC-CT--TCGTTTTTTCCAATAAATCTGGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208262" ref_strand="-" ref_description="SGN-E208262 [cLEC-37-B6]">
      <seq>aatggtggcacttggccagttcttctgtggctccttactgcagcagctatcaagactggtcgaccccaaatagcacgacgggccattgaactagctgaatcgcgtttactaaaagatagctggccagagtattacgacggaaagcttggtcgatttattggaaagcaggcgcgtaagttccagacatggtccattgctggttacttggtagctagaatgatgctggaagatccatctcatttgggtatgatatcacttgaagaagataaacagatgaagcctaccatgaaaagatctgcttcttggacttgttaatatccttgtacacaaattttctttcgaatgccatgctttttttttctctctttttgcaattcgtaaacactctcttttagtttgtcgcaaaaatgttgaattttttatgaattggctacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="79431" stop="80851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79731" g_stop="79749" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79750" i_stop="80134" i_length="385">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80135" g_stop="80551" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="436" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E208262" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208262" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79731" e_stop="79749"/>
          <exon e_start="80135" e_stop="80551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTGGCACTTGGCCAGGTTATAGTTTCTTCCTTCTTATATAACACCAAAAGTACTTCATTCTATTTAGCAATAGTTTGCTATGTCATCTCGCATCACGATGACCAGTATATCTGTCTACTTTTTGGTAGCCTATCATGTCTCCCTATATTCCATTTTATGCATCAATCTTGCTCTTTTAGTCTATTCCGAAAAGAATGATGCCTTTCTATATTTAAAAACCCTTAGTGATACGGTTTATAGCCACAAAAAATGTCATGACATGTTTAAGATCACGTGTTGAACTCTGTGCTCAGTCACACTTTCACATAAAATGAAACCGAGGGAGTACTCTTTTCATGTTCTGCACCGTGACATTTACAAACTTATGCTAATACTGATTTGCCTGGTTTTTTGTGTCTAGTTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAAATTTTCTTTCGAATGCCATGCTTTTTTTTTCTCTCTTTTTGCAATTCGTAAACACTCTCTTTTAGTTTGTCGCAAAAATGTTGAATTTTTTATGAATTGGCTACGA</genome_strand>
        <mrna_strand>AATGGTGGCACTTGGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAAATTTTCTTTCGAATGCCATGCTTTTTTTTTCTCTCTTTTTGCAATTCGTAAACACTCTCTTTTAGTTTGTCGCAAAAATGTTGAATTTTTTATGAATTGGCTACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210023" ref_strand="+" ref_description="SGN-E210023 [cLEC-40-L20]">
      <seq>gtgtacaatctcgtagccaattcataaaaaattcaacatttttgcgacaaactaaaagagagtgtttacgaattgcaaaaagagagaaaaaaaaagcatggcattcgaaagaaaatttgtgtacaaggatattaacaagtccaagaagcagatcttttcatggtaggcttcatctgtttatcttcttcaagtgatatcatacccaaatgagatggatcttccagcatcattctagctaccaagtaaccagcaatggaccatgtctggaacttacgcgcctgctttccaataaatcgaccaagctttccgtcgtaatactctggccagctatcttttagtaaacgcgattcagctagttcaatggcccgtcgtgctatttggggtcgaccagtcttgatagctgctgcagtaaggagccacagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="80861" stop="79837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80561" g_stop="80137" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E210023" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80561" e_stop="80137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTACAATCTCGTAGCCAATTCATAAAAAATTCAACATTTTTGCGACAAACTAAAAGAGAGTGTTTACGAATTGCAAAAAGAGAGAAAAAAAAAGCATGGCATTCGAAAGAAAATTTGTGTACAAGGATATTAACAAGTCCAAGAAGCAGATCTTTTCATGGTAGGCTTCATCTGTTTATCTTCTTCAAGTGATATCATACCCAAATGAGATGGATCTTCCAGCATCATTCTAGCTACCAAGTAACCAGCAATGGACCATGTCTGGAACTTACGCGCCTGCTTTCCAATAAATCGACCAAGCTTTCCGTCGTAATACTCTGGCCAGCTATCTTTTAGTAAACGCGATTCAGCTAGTTCAATGGCCCGTCGTGCTATTTGGGGTCGACCAGTCTTGATAGCTGCTGCAGTAAGGAGCCACAGAAG</genome_strand>
        <mrna_strand>GTGTACAATCTCGTAGCCAATTCATAAAAAATTCAACATTTTTGCGACAAACTAAAAGAGAGTGTTTACGAATTGCAAAAAGAGAGAAAAAAAAAGCATGGCATTCGAAAGAAAATTTGTGTACAAGGATATTAACAAGTCCAAGAAGCAGATCTTTTCATGGTAGGCTTCATCTGTTTATCTTCTTCAAGTGATATCATACCCAAATGAGATGGATCTTCCAGCATCATTCTAGCTACCAAGTAACCAGCAATGGACCATGTCTGGAACTTACGCGCCTGCTTTCCAATAAATCGACCAAGCTTTCCGTCGTAATACTCTGGCCAGCTATCTTTTAGTAAACGCGATTCAGCTAGTTCAATGGCCCGTCGTGCTATTTGGGGTCGACCAGTCTTGATAGCTGCTGCAGTAAGGAGCCACAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307559" ref_strand="+" ref_description="SGN-E307559 [cLEY-24-H5]">
      <seq>cagctatcaagactggtcgaccccgaatagcacgacgggccagggaactacctgaatcgcgtttgctaaaagatagctggccggagttttacgacggaaagcttggtcgatttattggaaagcaggcgcgtaagttccagacatggcccattgctggttacttggtagctagaatgatgctggaagatccatctcatttgggtatgatatcacttgaagaagataaacagatgaagcctaccatgaaaagatctgcttcttggacttgttaatatccttgtacacaaattttctttcggatgccatgctttatttttctctctttttgcaagtggtaaacactctctttgagtttgtcgcaaaaatgttgaattttttatgaattggctacgagagggtacacttcactcctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="79859" stop="80873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80159" g_stop="80573" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E307559" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80159" e_stop="80573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAAATTTTCTTTCGAATGCCATGCTTTTTTTTTCTCTCTTTTTGCAATTCGTAAACACTCTCTTTTAGTTTGTCGCAAAAATGTTGAATTTTTTATGAATTGGCTACGAGATTGTACACTTCACTCCTATT</genome_strand>
        <mrna_strand>CAGCTATCAAGACTGGTCGACCCCGAATAGCACGACGGGCCAGGGAACTACCTGAATCGCGTTTGCTAAAAGATAGCTGGCCGGAGTTTTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGCCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAAATTTTCTTTCGGATGCCATGCTTTATTTTTCTCTCTTTTTGCAAGTGGTAAACACTCTCTTTGAGTTTGTCGCAAAAATGTTGAATTTTTTATGAATTGGCTACGAGAGGGTACACTTCACTCCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606309" ref_strand="+" ref_description="SGN-E606309 [22250]">
      <seq>ggccagagtattacgatgggaagcttggtcgatttatcggaaagcaggcccgtaagttccagacatggtccattgctggttacttggtagctagaatgatgctggaagatccatctcatttgggtatgatatcacttgaagaagataaacagatgaagcctaccatgaaaagatctgcttcttggacttgttaatatccttgtacacaatttttctttcgaatgccatgtttttttttctttttcttttttgcaattcgtaaacattctcttttagtttgtcgcaaaaatgttgaattttctatgaattggctacagattgtatacttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="79937" stop="80865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80237" g_stop="80572" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E606309" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80237" e_stop="80572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAAATTTTCTTTCGAATGCCATGCTTTTTTTT-TCTCTC-TTTTTGCAATTCGTAAACACTCTCTTTTAGTTTGTCGCAAAAATGTTGAATTTTTTATGAATTGGCTACGAGATTGTACACTTCACTCCTAT</genome_strand>
        <mrna_strand>GGCCAGAGTATTACGATGGGAAGCTTGGTCGATTTATCGGAAAGCAGGCCCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAATTTTTCTTTCGAATGCCATGTTTTTTTTTCTTTTTCTTTTTTGCAATTCGTAAACATTCTCTTTTAGTTTGTCGCAAAAATGTTGAATTTTCTATGAATTGGCTAC-AGATTGTATACTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541021" ref_strand="+" ref_description="SGN-E541021 [TUS-61-J15](-)">
      <seq>ttggtagcaactacactactgatgatgtactcccaaatttggaagagcagggtgtgcgtcagttatacccaaaagggcctaatgttgatttcaagaaagaactaagagcacttaacagagaattgcagctacatatattggagcttgctgatgttcttgtagagcgcccttcgcaatatgccaggagagtggaagagatatctctgatattcaagaacttgcaccacctactcaattctctgcgtcctcaccaggctcgagccacacttatccacattctagaacttcagatacaacgacgtaaacaagcaatagaggatatcaagcggagaagggaagaagctcagaagcttctaaaggaggcacttggtacccttgagggacagtagaatgctctttagactttacacacacagctggcagaattagtgtctagaatgctttgaaattacagtatagaaatcattcagtcctaatgtgaaattttctttattcacttgcctgaattttatacagtgacaatgcttttatgtggcaagtgtcacaatccagtgccaaaaattcgacgtttcagtcatcgaggcaatacagagtttcgattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="84165" stop="81985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83865" g_stop="83796" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="87" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83795" i_stop="83273" i_length="523">
            <donor d_prob="0.462" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83272" g_stop="83106" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="254" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83105" i_stop="82999" i_length="107">
            <donor d_prob="0.585" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82998" g_stop="82925" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="328" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82924" i_stop="82562" i_length="363">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82561" g_stop="82285" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="605" r_length="277" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E541021" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83865" e_stop="83796"/>
          <exon e_start="83272" e_stop="83106"/>
          <exon e_start="82998" e_stop="82925"/>
          <exon e_start="82561" e_stop="82285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATGATGTACTCCCAAATTTGGAAGAGCAGGGTGTGCGTCAGTTATACCCAAAAGGGCCTAATGTTGGTAATGTTTGCAGCTATTCTCAAAAAGCCGTATTTGTTCCTACTGTGATATGTAACATGCATATCTTTTTTAAACATTTATGGTTAAAAGAATTTAAGTATGTGGATACACACATTTGTACCTTATATATCATCCTGCATTTTCGATATGAATCTGCATGGAACATGACACTCGTTTTTGTTTCCTTATCGTAAGTTCCAAGTAAATATCCTCTACAAGGTCAATCGATATGTCTAATCATTTCTGTTCTCTTTCTCTAAGCCAGTGACCAGAATAAATAAAAGGGAAATAGATATAAAGTTTGAGCCCTTTAGGTTATTCAAAGTCTTAGACAAAAGATTGCAAATCAAGTATCCTATGCATTGCAAAAGTTAATTGCAGAATCAATTCCATAGTTGAAACGATGATGTCCCCTTTATTGGGTGCTGCTGCATATGGGATGCTTCCAGAGATAAATTTAGGTGCTATTTTGTTGCTTCTCAGAAAAAATTATTCATTCTTATTCTGCTGATTCATGTTACAGATTTCAAGAAAGAACTAAGAGCACTTAACAGAGAATTGCAGCTACATATATTGGAGCTTGCTGATGTTCTTGTAGAGCGCCCTTCGCAATATGCCAGGAGAGTGGAAGAGATATCTCTGATATTCAAGAACTTGCACCACCTACTCAATTCTCTGCGTCCTCACCAGGTGATCAATTGGTGAAATCTAAGTGTCTAAATATTTCTGGGTTTTAGCATGGCTATAGAAGATAGATGATCTCAATAATCATTTACCTTTGTTTCTTTCTTTTACAGGCTCGAGCCACACTTATCCACATTCTAGAACTTCAGATACAACGACGTAAACAAGCAATAGAGGATATCAAGCGGTATGATGTTGTTTGTATGTTCTTTTTATCATATATATTTAGCTTCTTCCTTCATTAGATTTAGATGAAAAATCGTGAGTTTTCTAGAAGAGTTCAAGTGTGCCTCATCAAACAGTTGCAAGTGAAAGAATTCAGTTTCCCTTTAAGCTGCTTCAGTCACTTTCAGCTACACAGATTATATGTAATTACTATATCAAACTACCTCTCAAAATGAAAAGAGAGATGTATTTACCGTTAACTCTAATAATGTGCATAAATTCACAAGTTGTTGGAGTTGAGGCAGACTGTTTAATTCTCTCTTTATCTTTTTATCCTGGTTACTATGATTTTAGTCATGATTTTGGTTTCTATTTGCTTGTATAGGAGAAGGGAAGAAGCTCAGAAGCTTCTAAAGGAGGCACTTGGTACCCTTGAGGGACAGTAGAATGCTCTTTAGACTTTACACACACAGCTGGCAGAATTAGTGTCTAGAATGCTTTGAAATTACAGTATAGAAATCATTCAGTCCTAATGTGAAATTTTCTTTATTCACTTGCCTGAATTTTATACAGTGACAATGCTTTTATGTGGCAAGTGTCACAATCCAGTGCCAAAAATTCGACGTTTCAGTCATCGAGGCAATACAGAGTTTCGATTAAGA</genome_strand>
        <mrna_strand>ACTGATGATGTACTCCCAAATTTGGAAGAGCAGGGTGTGCGTCAGTTATACCCAAAAGGGCCTAATGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAAGAAAGAACTAAGAGCACTTAACAGAGAATTGCAGCTACATATATTGGAGCTTGCTGATGTTCTTGTAGAGCGCCCTTCGCAATATGCCAGGAGAGTGGAAGAGATATCTCTGATATTCAAGAACTTGCACCACCTACTCAATTCTCTGCGTCCTCACCAG...........................................................................................................GCTCGAGCCACACTTATCCACATTCTAGAACTTCAGATACAACGACGTAAACAAGCAATAGAGGATATCAAGCG...........................................................................................................................................................................................................................................................................................................................................................................GAGAAGGGAAGAAGCTCAGAAGCTTCTAAAGGAGGCACTTGGTACCCTTGAGGGACAGTAGAATGCTCTTTAGACTTTACACACACAGCTGGCAGAATTAGTGTCTAGAATGCTTTGAAATTACAGTATAGAAATCATTCAGTCCTAATGTGAAATTTTCTTTATTCACTTGCCTGAATTTTATACAGTGACAATGCTTTTATGTGGCAAGTGTCACAATCCAGTGCCAAAAATTCGACGTTTCAGTCATCGAGGCAATACAGAGTTTCGATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541023" ref_strand="+" ref_description="SGN-E541023 [TUS-61-J15]">
      <seq>ttggtagcaactacactactgatgatgtactcccaaatttggaagagcagggtgtgcgtcagttatacccaaaagggcctaatgttgatttcaagaaagaactaagagcacttaacagagaattgcagctacatatattggagcttgctgatgttcttgtagagcgcccttcgcaatatgccaggagagtggaagagatatctctgatattcaagaacttgcaccacctactcaattctctgcgtcctcaccaggctcgagccacacttatccacattctagaacttcagatacaacgacgtaaacaagcaatagaggatatcaagcggagaagggaagaagctcagaagcttctaaaggaggcacttggtacccttgagggacagtagaatgctctttagactttacacacacagctggcagaattagtgtctagaatgctttgaaattacagtatagaaatcattcagtcctaatgtgaaattttctttattcacttgcctgaattttatacagtgacaatgcttttatgtggcaagtgtcacaatccagtgccaaaaattcgacgtttcagtcatcgaggcaatacagagtttcgattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="84165" stop="81985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83865" g_stop="83796" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="87" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83795" i_stop="83273" i_length="523">
            <donor d_prob="0.462" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83272" g_stop="83106" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="254" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83105" i_stop="82999" i_length="107">
            <donor d_prob="0.585" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82998" g_stop="82925" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="328" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82924" i_stop="82562" i_length="363">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82561" g_stop="82285" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="605" r_length="277" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E541023" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83865" e_stop="83796"/>
          <exon e_start="83272" e_stop="83106"/>
          <exon e_start="82998" e_stop="82925"/>
          <exon e_start="82561" e_stop="82285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATGATGTACTCCCAAATTTGGAAGAGCAGGGTGTGCGTCAGTTATACCCAAAAGGGCCTAATGTTGGTAATGTTTGCAGCTATTCTCAAAAAGCCGTATTTGTTCCTACTGTGATATGTAACATGCATATCTTTTTTAAACATTTATGGTTAAAAGAATTTAAGTATGTGGATACACACATTTGTACCTTATATATCATCCTGCATTTTCGATATGAATCTGCATGGAACATGACACTCGTTTTTGTTTCCTTATCGTAAGTTCCAAGTAAATATCCTCTACAAGGTCAATCGATATGTCTAATCATTTCTGTTCTCTTTCTCTAAGCCAGTGACCAGAATAAATAAAAGGGAAATAGATATAAAGTTTGAGCCCTTTAGGTTATTCAAAGTCTTAGACAAAAGATTGCAAATCAAGTATCCTATGCATTGCAAAAGTTAATTGCAGAATCAATTCCATAGTTGAAACGATGATGTCCCCTTTATTGGGTGCTGCTGCATATGGGATGCTTCCAGAGATAAATTTAGGTGCTATTTTGTTGCTTCTCAGAAAAAATTATTCATTCTTATTCTGCTGATTCATGTTACAGATTTCAAGAAAGAACTAAGAGCACTTAACAGAGAATTGCAGCTACATATATTGGAGCTTGCTGATGTTCTTGTAGAGCGCCCTTCGCAATATGCCAGGAGAGTGGAAGAGATATCTCTGATATTCAAGAACTTGCACCACCTACTCAATTCTCTGCGTCCTCACCAGGTGATCAATTGGTGAAATCTAAGTGTCTAAATATTTCTGGGTTTTAGCATGGCTATAGAAGATAGATGATCTCAATAATCATTTACCTTTGTTTCTTTCTTTTACAGGCTCGAGCCACACTTATCCACATTCTAGAACTTCAGATACAACGACGTAAACAAGCAATAGAGGATATCAAGCGGTATGATGTTGTTTGTATGTTCTTTTTATCATATATATTTAGCTTCTTCCTTCATTAGATTTAGATGAAAAATCGTGAGTTTTCTAGAAGAGTTCAAGTGTGCCTCATCAAACAGTTGCAAGTGAAAGAATTCAGTTTCCCTTTAAGCTGCTTCAGTCACTTTCAGCTACACAGATTATATGTAATTACTATATCAAACTACCTCTCAAAATGAAAAGAGAGATGTATTTACCGTTAACTCTAATAATGTGCATAAATTCACAAGTTGTTGGAGTTGAGGCAGACTGTTTAATTCTCTCTTTATCTTTTTATCCTGGTTACTATGATTTTAGTCATGATTTTGGTTTCTATTTGCTTGTATAGGAGAAGGGAAGAAGCTCAGAAGCTTCTAAAGGAGGCACTTGGTACCCTTGAGGGACAGTAGAATGCTCTTTAGACTTTACACACACAGCTGGCAGAATTAGTGTCTAGAATGCTTTGAAATTACAGTATAGAAATCATTCAGTCCTAATGTGAAATTTTCTTTATTCACTTGCCTGAATTTTATACAGTGACAATGCTTTTATGTGGCAAGTGTCACAATCCAGTGCCAAAAATTCGACGTTTCAGTCATCGAGGCAATACAGAGTTTCGATTAAGA</genome_strand>
        <mrna_strand>ACTGATGATGTACTCCCAAATTTGGAAGAGCAGGGTGTGCGTCAGTTATACCCAAAAGGGCCTAATGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAAGAAAGAACTAAGAGCACTTAACAGAGAATTGCAGCTACATATATTGGAGCTTGCTGATGTTCTTGTAGAGCGCCCTTCGCAATATGCCAGGAGAGTGGAAGAGATATCTCTGATATTCAAGAACTTGCACCACCTACTCAATTCTCTGCGTCCTCACCAG...........................................................................................................GCTCGAGCCACACTTATCCACATTCTAGAACTTCAGATACAACGACGTAAACAAGCAATAGAGGATATCAAGCG...........................................................................................................................................................................................................................................................................................................................................................................GAGAAGGGAAGAAGCTCAGAAGCTTCTAAAGGAGGCACTTGGTACCCTTGAGGGACAGTAGAATGCTCTTTAGACTTTACACACACAGCTGGCAGAATTAGTGTCTAGAATGCTTTGAAATTACAGTATAGAAATCATTCAGTCCTAATGTGAAATTTTCTTTATTCACTTGCCTGAATTTTATACAGTGACAATGCTTTTATGTGGCAAGTGTCACAATCCAGTGCCAAAAATTCGACGTTTCAGTCATCGAGGCAATACAGAGTTTCGATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293529" ref_strand="+" ref_description="SGN-E293529 [cLET-15-P16]">
      <seq>tggtagcaactacactactgatgatgtactcccaaatttggaagagcagggtgtgcgtcagttatacccaaaagggcctaatgttgatttcaagaaagaactaagagcacttaacagagaattgcagctacatatattggagcttgctgatgttattgtagagcgcccttcgcaatatgccaggagagtggaagagatatctctgatattcaagaacttgcaccacctactgaaatctctgcgtcctcaccaggctcgagccacacttatccacattctagaactttatatacaacgacgtaaacaatcaatacaggatatcaagcggtgaagggaagaagctcagaagcttctaacggaggcacttggtacccttgagggacagtagaatgctctttagactttacacacacagctggcataattagtgtctagaatgctttgaaattacagtatataaatcattcaggcctaatgtgaaattatctttattcacttgcctgaattttatacagtgacaatgcttttatgtggcaagtgttacaatccagtgccaaaaattcgacgtttcagtcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="84165" stop="82010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83865" g_stop="83796" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="86" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83795" i_stop="83273" i_length="523">
            <donor d_prob="0.462" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83272" g_stop="83106" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="253" r_length="167" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83105" i_stop="82999" i_length="107">
            <donor d_prob="0.585" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82998" g_stop="82925" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="327" r_length="74" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82924" i_stop="82562" i_length="363">
            <donor d_prob="0.969" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82561" g_stop="82310" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="579" r_length="252" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E293529" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83865" e_stop="83796"/>
          <exon e_start="83272" e_stop="83106"/>
          <exon e_start="82998" e_stop="82925"/>
          <exon e_start="82561" e_stop="82310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATGATGTACTCCCAAATTTGGAAGAGCAGGGTGTGCGTCAGTTATACCCAAAAGGGCCTAATGTTGGTAATGTTTGCAGCTATTCTCAAAAAGCCGTATTTGTTCCTACTGTGATATGTAACATGCATATCTTTTTTAAACATTTATGGTTAAAAGAATTTAAGTATGTGGATACACACATTTGTACCTTATATATCATCCTGCATTTTCGATATGAATCTGCATGGAACATGACACTCGTTTTTGTTTCCTTATCGTAAGTTCCAAGTAAATATCCTCTACAAGGTCAATCGATATGTCTAATCATTTCTGTTCTCTTTCTCTAAGCCAGTGACCAGAATAAATAAAAGGGAAATAGATATAAAGTTTGAGCCCTTTAGGTTATTCAAAGTCTTAGACAAAAGATTGCAAATCAAGTATCCTATGCATTGCAAAAGTTAATTGCAGAATCAATTCCATAGTTGAAACGATGATGTCCCCTTTATTGGGTGCTGCTGCATATGGGATGCTTCCAGAGATAAATTTAGGTGCTATTTTGTTGCTTCTCAGAAAAAATTATTCATTCTTATTCTGCTGATTCATGTTACAGATTTCAAGAAAGAACTAAGAGCACTTAACAGAGAATTGCAGCTACATATATTGGAGCTTGCTGATGTTCTTGTAGAGCGCCCTTCGCAATATGCCAGGAGAGTGGAAGAGATATCTCTGATATTCAAGAACTTGCACCACCTACTCAATTCTCTGCGTCCTCACCAGGTGATCAATTGGTGAAATCTAAGTGTCTAAATATTTCTGGGTTTTAGCATGGCTATAGAAGATAGATGATCTCAATAATCATTTACCTTTGTTTCTTTCTTTTACAGGCTCGAGCCACACTTATCCACATTCTAGAACTTCAGATACAACGACGTAAACAAGCAATAGAGGATATCAAGCGGTATGATGTTGTTTGTATGTTCTTTTTATCATATATATTTAGCTTCTTCCTTCATTAGATTTAGATGAAAAATCGTGAGTTTTCTAGAAGAGTTCAAGTGTGCCTCATCAAACAGTTGCAAGTGAAAGAATTCAGTTTCCCTTTAAGCTGCTTCAGTCACTTTCAGCTACACAGATTATATGTAATTACTATATCAAACTACCTCTCAAAATGAAAAGAGAGATGTATTTACCGTTAACTCTAATAATGTGCATAAATTCACAAGTTGTTGGAGTTGAGGCAGACTGTTTAATTCTCTCTTTATCTTTTTATCCTGGTTACTATGATTTTAGTCATGATTTTGGTTTCTATTTGCTTGTATAGGAGAAGGGAAGAAGCTCAGAAGCTTCTAAAGGAGGCACTTGGTACCCTTGAGGGACAGTAGAATGCTCTTTAGACTTTACACACACAGCTGGCAGAATTAGTGTCTAGAATGCTTTGAAATTACAGTATAGAAATCATTCAGTCCTAATGTGAAATTTTCTTTATTCACTTGCCTGAATTTTATACAGTGACAATGCTTTTATGTGGCAAGTGTCACAATCCAGTGCCAAAAATTCGACGTTTCAGTCATCG</genome_strand>
        <mrna_strand>ACTGATGATGTACTCCCAAATTTGGAAGAGCAGGGTGTGCGTCAGTTATACCCAAAAGGGCCTAATGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAAGAAAGAACTAAGAGCACTTAACAGAGAATTGCAGCTACATATATTGGAGCTTGCTGATGTTATTGTAGAGCGCCCTTCGCAATATGCCAGGAGAGTGGAAGAGATATCTCTGATATTCAAGAACTTGCACCACCTACTGAAATCTCTGCGTCCTCACCAG...........................................................................................................GCTCGAGCCACACTTATCCACATTCTAGAACTTTATATACAACGACGTAAACAATCAATACAGGATATCAAGCG...........................................................................................................................................................................................................................................................................................................................................................................GTGAAGGGAAGAAGCTCAGAAGCTTCTAACGGAGGCACTTGGTACCCTTGAGGGACAGTAGAATGCTCTTTAGACTTTACACACACAGCTGGCATAATTAGTGTCTAGAATGCTTTGAAATTACAGTATATAAATCATTCAGGCCTAATGTGAAATTATCTTTATTCACTTGCCTGAATTTTATACAGTGACAATGCTTTTATGTGGCAAGTGTTACAATCCAGTGCCAAAAATTCGACGTTTCAGTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275862" ref_strand="+" ref_description="SGN-E275862 [cLEN-18-N10]">
      <seq>actgccttttggctcattttaatgtaactattattgtgacagagaagataagaacattgtttttgtgaaatcacatgtcgacagcaacatacccaccaccccctccgttttataggctgtacaaggactatcttcaagaccccaagtctgctccggaacctccccctccaattgagggcacctatgtcctctttggtagcaactacactactgatgatgtactcccaaatttggaagagcagggtgtgcgtcagttatacccaaaagggcctaatgttgatttcaagaaagaactacgagcacttaacagagaattgcagctacatatattggagcttgctgatgttcttgtagagcgcccttcgcaatatgccaggagagtggaagagatatctctgatattcaagaacttgcaccacctactcaattctctgcgtcctcaccaggctcgagccacacttatccacattctagaacttcagatacaacgacgtaaacaagcaatagaggatatcaagcggagaagggaagaagctcagaagcttctaaaggaggcacttggtacccttgagggacagtagaatgctctttagactttacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="84975" stop="82179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84675" g_stop="84467" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84466" i_stop="83866" i_length="601">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83865" g_stop="83796" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="279" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83795" i_stop="83273" i_length="523">
            <donor d_prob="0.462" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83272" g_stop="83106" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="446" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83105" i_stop="82999" i_length="107">
            <donor d_prob="0.585" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82998" g_stop="82925" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="520" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82924" i_stop="82562" i_length="363">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82561" g_stop="82479" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="603" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E275862" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84675" e_stop="84467"/>
          <exon e_start="83865" e_stop="83796"/>
          <exon e_start="83272" e_stop="83106"/>
          <exon e_start="82998" e_stop="82925"/>
          <exon e_start="82561" e_stop="82479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCCCTTTGGCTCATCTTAATGTAACTATTATTGTGACAGAGAAGATAAGAACATTGTTTTTGTGAAATCAGATGTCGACAGCAACATACCCACCACCCCCTCCGTTTTATAGGCTGTACAAGGACTATCTTCAAGACCCCAAGTCTGCTCCGGAACCTCCCCCTCCAATTGAGGGCACCTATGTCCTCTTTGGTAGCAACTACACTGTAAAGTCTCTGACCCGTTCTTCTACTCCCTTTTGAAATCCACCCCCAAATGGGGAAAAGGGGTGAAAAAGTCATGATACCCAATTGCTTACTTGTGCTTAATGTGGATGTATGAATGTATAAGGTGTCTTTGAGGCCCATTCAAGTTACTGGGTAGCTCTTTACCTCGAAAGATTTGCTTTTACTTTAAAGATTGAACCATGTTCTCAGTTTCTTCACTTTCATATACTTTATATTGCTTTTGGGGTAAAGGTATGGATTTAATTCAATGCGCGCTTAAAAAAATACAAAAGATTAGAGGGGGAAAATGTCTGATGCTAAGGTGAGGTTCAGTGAGATATTCAACAATGATTTAGATTTTATCTATTCTGAAATATGAATGAGGTTTCCATTAACATTCTCACCTTTATCTTATGTCATCTTGAGCTGCAACGCATCAAGAATCTTTATTCTGGTCACTCCTCTCAGTCCTCTGTGTTCTTGTCTTTTGTGAATTTTGTTTGTCAGTTGTGTTGCTGAAATTAAGTTGTCGTTGTGGTTTTTATTAGATAGCTATGTGCAAGTTTGCTCATTATTTATTTTGGCATTACCGTTTGCGCAGACTGATGATGTACTCCCAAATTTGGAAGAGCAGGGTGTGCGTCAGTTATACCCAAAAGGGCCTAATGTTGGTAATGTTTGCAGCTATTCTCAAAAAGCCGTATTTGTTCCTACTGTGATATGTAACATGCATATCTTTTTTAAACATTTATGGTTAAAAGAATTTAAGTATGTGGATACACACATTTGTACCTTATATATCATCCTGCATTTTCGATATGAATCTGCATGGAACATGACACTCGTTTTTGTTTCCTTATCGTAAGTTCCAAGTAAATATCCTCTACAAGGTCAATCGATATGTCTAATCATTTCTGTTCTCTTTCTCTAAGCCAGTGACCAGAATAAATAAAAGGGAAATAGATATAAAGTTTGAGCCCTTTAGGTTATTCAAAGTCTTAGACAAAAGATTGCAAATCAAGTATCCTATGCATTGCAAAAGTTAATTGCAGAATCAATTCCATAGTTGAAACGATGATGTCCCCTTTATTGGGTGCTGCTGCATATGGGATGCTTCCAGAGATAAATTTAGGTGCTATTTTGTTGCTTCTCAGAAAAAATTATTCATTCTTATTCTGCTGATTCATGTTACAGATTTCAAGAAAGAACTAAGAGCACTTAACAGAGAATTGCAGCTACATATATTGGAGCTTGCTGATGTTCTTGTAGAGCGCCCTTCGCAATATGCCAGGAGAGTGGAAGAGATATCTCTGATATTCAAGAACTTGCACCACCTACTCAATTCTCTGCGTCCTCACCAGGTGATCAATTGGTGAAATCTAAGTGTCTAAATATTTCTGGGTTTTAGCATGGCTATAGAAGATAGATGATCTCAATAATCATTTACCTTTGTTTCTTTCTTTTACAGGCTCGAGCCACACTTATCCACATTCTAGAACTTCAGATACAACGACGTAAACAAGCAATAGAGGATATCAAGCGGTATGATGTTGTTTGTATGTTCTTTTTATCATATATATTTAGCTTCTTCCTTCATTAGATTTAGATGAAAAATCGTGAGTTTTCTAGAAGAGTTCAAGTGTGCCTCATCAAACAGTTGCAAGTGAAAGAATTCAGTTTCCCTTTAAGCTGCTTCAGTCACTTTCAGCTACACAGATTATATGTAATTACTATATCAAACTACCTCTCAAAATGAAAAGAGAGATGTATTTACCGTTAACTCTAATAATGTGCATAAATTCACAAGTTGTTGGAGTTGAGGCAGACTGTTTAATTCTCTCTTTATCTTTTTATCCTGGTTACTATGATTTTAGTCATGATTTTGGTTTCTATTTGCTTGTATAGGAGAAGGGAAGAAGCTCAGAAGCTTCTAAAGGAGGCACTTGGTACCCTTGAGGGACAGTAGAATGCTCTTTAGACTTTACACA</genome_strand>
        <mrna_strand>ACTGCCTTTTGGCTCATTTTAATGTAACTATTATTGTGACAGAGAAGATAAGAACATTGTTTTTGTGAAATCACATGTCGACAGCAACATACCCACCACCCCCTCCGTTTTATAGGCTGTACAAGGACTATCTTCAAGACCCCAAGTCTGCTCCGGAACCTCCCCCTCCAATTGAGGGCACCTATGTCCTCTTTGGTAGCAACTACACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATGATGTACTCCCAAATTTGGAAGAGCAGGGTGTGCGTCAGTTATACCCAAAAGGGCCTAATGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAAGAAAGAACTACGAGCACTTAACAGAGAATTGCAGCTACATATATTGGAGCTTGCTGATGTTCTTGTAGAGCGCCCTTCGCAATATGCCAGGAGAGTGGAAGAGATATCTCTGATATTCAAGAACTTGCACCACCTACTCAATTCTCTGCGTCCTCACCAG...........................................................................................................GCTCGAGCCACACTTATCCACATTCTAGAACTTCAGATACAACGACGTAAACAAGCAATAGAGGATATCAAGCG...........................................................................................................................................................................................................................................................................................................................................................................GAGAAGGGAAGAAGCTCAGAAGCTTCTAAAGGAGGCACTTGGTACCCTTGAGGGACAGTAGAATGCTCTTTAGACTTTACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709337" ref_strand="+" ref_description="SGN-E709337 [FA51CA02]">
      <seq>cgctactctgtcgccggttgccgccggttgtcgctgctcgcacgtcttctctttttcagctgatataagcccaaaattgtagcttatgtttggactaaactacaaattggctaaggtgctcccatcgacaatacactattggagagcgggtgcagaggtctgatatttctcgttcaagtgtcgactcaacgccgagagaagtcaccttttttggttgacaaaaacctcgaaactgccctttggctcatcttaatgtaactattattgggacagagaagataagaacattgtttttgtgaaatcacatgtcgacagcaacatacccaccaccgcctccgttttataggctgtacaaggactatcttcaagaccccaagtctgctccagaacctccccctccaattgagggcacctatgtcctctttggtaacaactaccctactgatgatgtactcccaaatttggaagagcacggtgtgcgtcacttatacccaaaagggcctaatgtccgacttcaagaaagaactaccagccacttaacagagaattgcacctacatatattggagcttgctgatgttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="86979" stop="82901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86681" g_stop="86623" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86622" i_stop="84848" i_length="1775">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84847" g_stop="84467" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="440" r_length="381" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84466" i_stop="83866" i_length="601">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83865" g_stop="83796" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="511" r_length="71" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83795" i_stop="83273" i_length="523">
            <donor d_prob="0.462" d_score="0.90"/>
            <acceptor a_prob="0.956" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83272" g_stop="83201" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="584" r_length="73" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E709337" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86681" e_stop="86623"/>
          <exon e_start="84847" e_stop="84467"/>
          <exon e_start="83865" e_stop="83796"/>
          <exon e_start="83272" e_stop="83201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTACTCTGTCGCCGGTTGCCGCCGGTTGTCGCTGCTCGCACGTCTTCTCTTTTTCAGGTGAGTTCGATTATTGTGTGTTTTAATTCTTTCCAAAAGGAACAATTGAAGATGAAGAAAAATCTGTTGAATTTTTAACTTGAAAAGAACTGAACTATACACACCATAATTGAATCCATACTAGTTCGAAGCGTGATTTATGCTAGTTGAAGATGTGATTTGGATTATCATTATGATAATCATTTCTCTATATTTGAAGTTTTTGAACTCAATGTTCTTAGGTTAATTAGATATTTATGAGTCAATTGATTTTTGAATGAACCATTGCATAAAAATCAATTGTCGATGGTTACTTGTTAGGTTAAATAGGTTTCTGCTGCTGATTGTTTTTGTCGATCTTTAAGTTTTATATAGCTGTACTTTGAGATAGAAGGAAGGTGTTTGAGCTATGAGAAATTCATTCAGCTTGTAAGTTTTTGATTTGCTTCACCTGGAACTCAATTCGAAGCTAGCCTAACTTATTTTTCTGTTTATTTGTCCCTGGGCACATAAGTAGAAAGTTTGAGTATCTTCTCTTTACAAGAAAAACCTGAGTTATGTGGCACTTTAGACTACAAATTGTATTTTATACCTGACAGATACTATTGTAGGGCATATAATTTAGTTAGATTCGTTTTTGGTTCTGCTTTGGGCTGTATTTCCTTGAGACGAGGGTCGGGAACCACCTCTCTAACTCTGAGGTAGGGGTAAGGTTTGCGCGCTCTAAACCTTTGGGTATTTTGTTGTTGTAGATTTTATTGTAGTGCATATGGTATTACGTCAACATATTGAGTGTGTTCCCATAGTGGGGTCTGGGGAGGGCACTAACCTTCTTCTCCCACATAAAGTGCTACAACACACTGCTACTTACAAGACTTCTACCCTAGTCCTCGACCTCGAAACTTTCCTATATAGGGTCATATTCCTAGTAAGTTGAAGTTGTGTCATGTAGGGTTGAATCACCTTCCCCTTGTTCTTTTATGACCTATCCCTGCCTTTCTAACTCCTGTTCCGCCAATATTGGACTAGCACAGTTACCATTTAATCATTGAACAGTGAAATAGCCTTTCCATGAGAAATCTTTGAAACAGAAAAAATGAACTGCTTAAAATCATGGTGAGAATTTCGATGCACCAAAAGAAAAGTATCATGACAAAACCGAGCAGTCACTTAACACTAGAAAGGATCACAAACTACTCTAATGACAGTTACATATGTAACATGGGTATCTTCTCTGGTACTCGAATGAAATGAACATTCTTCTAGTTTTAAGTATACATTTAGTCTAAGTTGCTCTGATTCTGCACTTTTGGTGCCACACCCGTGTCGACACGACATGGGTGTGGGATCTTTGTCCGATTTGGTCAACTGATTTTGGGTACTTTGACCAAAATATATGGGGAAAGTCTTGACAGTTCTAAGATTTCTGTAATCAATACAAAAGCTAAGGTGAATTGAAGAAAATGGAATACCTTTTATATAGAAATTTCTTTGTCTTTCCTTTTCGTTTAATCTCCTTCCAAGATTCTCCTCAAGTTCTCCACATAATATAGGTTTTATAACTCTATTTTTAGGCGAATCCCTGCACCCGTATCCATACATAGATTCATATCCCCAAATCTTAAATTTAGATCTTGAAGGATCCAACCTCTGGATCCACACCCGTATCAGACACCCGCACCCGAGTTCGAGCAACTTAGCATTTAGTTCTCCTTTCTTCAGATTGTATATTATAAACTTGTTTTGATACTTTGACCCCTCTGACTTTTGAAATTGTTGCTTTTTATGTACTGCAGCTGATATAAGCCCAAAATTGTAGCTTATGTTTGGACTAAACTACAAATTGGTTAAGGTGCTCCCATCGACAATACACTATTGGAGAACGAGTGCAGAGGTCTGATATTTCTCGTTCAAGTGTCGACTCAACGCCGAGAGAAGTCGCCTTTTTTGGTTGAGAAAAACCTCGAAACTGCCCTTTGGCTCATCTTAATGTAACTATTATTGTGACAGAGAAGATAAGAACATTGTTTTTGTGAAATCAGATGTCGACAGCAACATACCCACCACCCCCTCCGTTTTATAGGCTGTACAAGGACTATCTTCAAGACCCCAAGTCTGCTCCGGAACCTCCCCCTCCAATTGAGGGCACCTATGTCCTCTTTGGTAGCAACTACACTGTAAAGTCTCTGACCCGTTCTTCTACTCCCTTTTGAAATCCACCCCCAAATGGGGAAAAGGGGTGAAAAAGTCATGATACCCAATTGCTTACTTGTGCTTAATGTGGATGTATGAATGTATAAGGTGTCTTTGAGGCCCATTCAAGTTACTGGGTAGCTCTTTACCTCGAAAGATTTGCTTTTACTTTAAAGATTGAACCATGTTCTCAGTTTCTTCACTTTCATATACTTTATATTGCTTTTGGGGTAAAGGTATGGATTTAATTCAATGCGCGCTTAAAAAAATACAAAAGATTAGAGGGGGAAAATGTCTGATGCTAAGGTGAGGTTCAGTGAGATATTCAACAATGATTTAGATTTTATCTATTCTGAAATATGAATGAGGTTTCCATTAACATTCTCACCTTTATCTTATGTCATCTTGAGCTGCAACGCATCAAGAATCTTTATTCTGGTCACTCCTCTCAGTCCTCTGTGTTCTTGTCTTTTGTGAATTTTGTTTGTCAGTTGTGTTGCTGAAATTAAGTTGTCGTTGTGGTTTTTATTAGATAGCTATGTGCAAGTTTGCTCATTATTTATTTTGGCATTACCGTTTGCGCAGACTGATGATGTACTCCCAAATTTGGAAGAGCAGGGTGTGCGTCAGTTATACCCAAAAGGGCCTAATGT-TGGTAATGTTTGCAGCTATTCTCAAAAAGCCGTATTTGTTCCTACTGTGATATGTAACATGCATATCTTTTTTAAACATTTATGGTTAAAAGAATTTAAGTATGTGGATACACACATTTGTACCTTATATATCATCCTGCATTTTCGATATGAATCTGCATGGAACATGACACTCGTTTTTGTTTCCTTATCGTAAGTTCCAAGTAAATATCCTCTACAAGGTCAATCGATATGTCTAATCATTTCTGTTCTCTTTCTCTAAGCCAGTGACCAGAATAAATAAAAGGGAAATAGATATAAAGTTTGAGCCCTTTAGGTTATTCAAAGTCTTAGACAAAAGATTGCAAATCAAGTATCCTATGCATTGCAAAAGTTAATTGCAGAATCAATTCCATAGTTGAAACGATGATGTCCCCTTTATTGGGTGCTGCTGCATATGGGATGCTTCCAGAGATAAATTTAGGTGCTATTTTGTTGCTTCTCAGAAAAAATTATTCATTCTTATTCTGCTGATTCATGTTACAGATTTCAAGAAAGAACTAAGAG-CACTTAACAGAGAATTGCAGCTACATATATTGGAGCTTGCTGATGTTCTTG</genome_strand>
        <mrna_strand>CGCTACTCTGTCGCCGGTTGCCGCCGGTTGTCGCTGCTCGCACGTCTTCTCTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATATAAGCCCAAAATTGTAGCTTATGTTTGGACTAAACTACAAATTGGCTAAGGTGCTCCCATCGACAATACACTATTGGAGAGCGGGTGCAGAGGTCTGATATTTCTCGTTCAAGTGTCGACTCAACGCCGAGAGAAGTCACCTTTTTTGGTTGACAAAAACCTCGAAACTGCCCTTTGGCTCATCTTAATGTAACTATTATTGGGACAGAGAAGATAAGAACATTGTTTTTGTGAAATCACATGTCGACAGCAACATACCCACCACCGCCTCCGTTTTATAGGCTGTACAAGGACTATCTTCAAGACCCCAAGTCTGCTCCAGAACCTCCCCCTCCAATTGAGGGCACCTATGTCCTCTTTGGTAACAACTACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATGATGTACTCCCAAATTTGGAAGAGCACGGTGTGCGTCACTTATACCCAAAAGGGCCTAATGTCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCAAGAAAGAACTACCAGCCACTTAACAGAGAATTGCACCTACATATATTGGAGCTTGCTGATGTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480431" ref_strand="+" ref_description="SGN-E480431 [cSTD-13-L8]">
      <seq>cgccggctgtcgctgctcgcacgtcttcttcgttttcagctgatataagcccagaattgtagcttatgtttagaccaaactacaaattggtttaaggtgcccccgttacaatatactattgcagagcgagtgcagaggtctgatatttctcgtccaagtgtcgactcaacgccgagagaagtcacctttttttgtttaaaaaaacctcgaaactgccctttggctcatcttaatgtaactattattgggacagagaagataagaacattgtttttgtgaaatcagatgtcgacagcgacatacccaccacctcctccgttttacaggctgtacaaggactatcttcaagaccccaagtctgctccggaacctccccctccaattgagggcacctatgtcctctttggtagcaactacactactgatgatgtactcccaaacttggaagagcagggcgtgcgtcaattatacccaaaagggcctaatgttgatttcaagaaagaactaagagcacttaacagagaattgcagctacatatattggagcttgctgatgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="86960" stop="82902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86660" g_stop="86623" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86622" i_stop="84848" i_length="1775">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.954" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84847" g_stop="84467" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="420" r_length="381" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84466" i_stop="83866" i_length="601">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83865" g_stop="83796" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="490" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83795" i_stop="83273" i_length="523">
            <donor d_prob="0.462" d_score="0.94"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83272" g_stop="83202" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="561" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E480431" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86660" e_stop="86623"/>
          <exon e_start="84847" e_stop="84467"/>
          <exon e_start="83865" e_stop="83796"/>
          <exon e_start="83272" e_stop="83202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGTTGTCGCTGCTCGCACGTCTTC-TCTTTTTCAGGTGAGTTCGATTATTGTGTGTTTTAATTCTTTCCAAAAGGAACAATTGAAGATGAAGAAAAATCTGTTGAATTTTTAACTTGAAAAGAACTGAACTATACACACCATAATTGAATCCATACTAGTTCGAAGCGTGATTTATGCTAGTTGAAGATGTGATTTGGATTATCATTATGATAATCATTTCTCTATATTTGAAGTTTTTGAACTCAATGTTCTTAGGTTAATTAGATATTTATGAGTCAATTGATTTTTGAATGAACCATTGCATAAAAATCAATTGTCGATGGTTACTTGTTAGGTTAAATAGGTTTCTGCTGCTGATTGTTTTTGTCGATCTTTAAGTTTTATATAGCTGTACTTTGAGATAGAAGGAAGGTGTTTGAGCTATGAGAAATTCATTCAGCTTGTAAGTTTTTGATTTGCTTCACCTGGAACTCAATTCGAAGCTAGCCTAACTTATTTTTCTGTTTATTTGTCCCTGGGCACATAAGTAGAAAGTTTGAGTATCTTCTCTTTACAAGAAAAACCTGAGTTATGTGGCACTTTAGACTACAAATTGTATTTTATACCTGACAGATACTATTGTAGGGCATATAATTTAGTTAGATTCGTTTTTGGTTCTGCTTTGGGCTGTATTTCCTTGAGACGAGGGTCGGGAACCACCTCTCTAACTCTGAGGTAGGGGTAAGGTTTGCGCGCTCTAAACCTTTGGGTATTTTGTTGTTGTAGATTTTATTGTAGTGCATATGGTATTACGTCAACATATTGAGTGTGTTCCCATAGTGGGGTCTGGGGAGGGCACTAACCTTCTTCTCCCACATAAAGTGCTACAACACACTGCTACTTACAAGACTTCTACCCTAGTCCTCGACCTCGAAACTTTCCTATATAGGGTCATATTCCTAGTAAGTTGAAGTTGTGTCATGTAGGGTTGAATCACCTTCCCCTTGTTCTTTTATGACCTATCCCTGCCTTTCTAACTCCTGTTCCGCCAATATTGGACTAGCACAGTTACCATTTAATCATTGAACAGTGAAATAGCCTTTCCATGAGAAATCTTTGAAACAGAAAAAATGAACTGCTTAAAATCATGGTGAGAATTTCGATGCACCAAAAGAAAAGTATCATGACAAAACCGAGCAGTCACTTAACACTAGAAAGGATCACAAACTACTCTAATGACAGTTACATATGTAACATGGGTATCTTCTCTGGTACTCGAATGAAATGAACATTCTTCTAGTTTTAAGTATACATTTAGTCTAAGTTGCTCTGATTCTGCACTTTTGGTGCCACACCCGTGTCGACACGACATGGGTGTGGGATCTTTGTCCGATTTGGTCAACTGATTTTGGGTACTTTGACCAAAATATATGGGGAAAGTCTTGACAGTTCTAAGATTTCTGTAATCAATACAAAAGCTAAGGTGAATTGAAGAAAATGGAATACCTTTTATATAGAAATTTCTTTGTCTTTCCTTTTCGTTTAATCTCCTTCCAAGATTCTCCTCAAGTTCTCCACATAATATAGGTTTTATAACTCTATTTTTAGGCGAATCCCTGCACCCGTATCCATACATAGATTCATATCCCCAAATCTTAAATTTAGATCTTGAAGGATCCAACCTCTGGATCCACACCCGTATCAGACACCCGCACCCGAGTTCGAGCAACTTAGCATTTAGTTCTCCTTTCTTCAGATTGTATATTATAAACTTGTTTTGATACTTTGACCCCTCTGACTTTTGAAATTGTTGCTTTTTATGTACTGCAGCTGATATAAGCCCAAAATTGTAGCTTATGTTTGGACTAAACTACAAATTGGT-TAAGGTGCTCCCATCGACAATACACTATTGGAGAACGAGTGCAGAGGTCTGATATTTCTCGTTCAAGTGTCGACTCAACGCCGAGAGAAGTCGCCTTTTTTGGTTGAGAAAAACCTCGAAACTGCCCTTTGGCTCATCTTAATGTAACTATTATTGTGACAGAGAAGATAAGAACATTGTTTTTGTGAAATCAGATGTCGACAGCAACATACCCACCACCCCCTCCGTTTTATAGGCTGTACAAGGACTATCTTCAAGACCCCAAGTCTGCTCCGGAACCTCCCCCTCCAATTGAGGGCACCTATGTCCTCTTTGGTAGCAACTACACTGTAAAGTCTCTGACCCGTTCTTCTACTCCCTTTTGAAATCCACCCCCAAATGGGGAAAAGGGGTGAAAAAGTCATGATACCCAATTGCTTACTTGTGCTTAATGTGGATGTATGAATGTATAAGGTGTCTTTGAGGCCCATTCAAGTTACTGGGTAGCTCTTTACCTCGAAAGATTTGCTTTTACTTTAAAGATTGAACCATGTTCTCAGTTTCTTCACTTTCATATACTTTATATTGCTTTTGGGGTAAAGGTATGGATTTAATTCAATGCGCGCTTAAAAAAATACAAAAGATTAGAGGGGGAAAATGTCTGATGCTAAGGTGAGGTTCAGTGAGATATTCAACAATGATTTAGATTTTATCTATTCTGAAATATGAATGAGGTTTCCATTAACATTCTCACCTTTATCTTATGTCATCTTGAGCTGCAACGCATCAAGAATCTTTATTCTGGTCACTCCTCTCAGTCCTCTGTGTTCTTGTCTTTTGTGAATTTTGTTTGTCAGTTGTGTTGCTGAAATTAAGTTGTCGTTGTGGTTTTTATTAGATAGCTATGTGCAAGTTTGCTCATTATTTATTTTGGCATTACCGTTTGCGCAGACTGATGATGTACTCCCAAATTTGGAAGAGCAGGGTGTGCGTCAGTTATACCCAAAAGGGCCTAATGTTGGTAATGTTTGCAGCTATTCTCAAAAAGCCGTATTTGTTCCTACTGTGATATGTAACATGCATATCTTTTTTAAACATTTATGGTTAAAAGAATTTAAGTATGTGGATACACACATTTGTACCTTATATATCATCCTGCATTTTCGATATGAATCTGCATGGAACATGACACTCGTTTTTGTTTCCTTATCGTAAGTTCCAAGTAAATATCCTCTACAAGGTCAATCGATATGTCTAATCATTTCTGTTCTCTTTCTCTAAGCCAGTGACCAGAATAAATAAAAGGGAAATAGATATAAAGTTTGAGCCCTTTAGGTTATTCAAAGTCTTAGACAAAAGATTGCAAATCAAGTATCCTATGCATTGCAAAAGTTAATTGCAGAATCAATTCCATAGTTGAAACGATGATGTCCCCTTTATTGGGTGCTGCTGCATATGGGATGCTTCCAGAGATAAATTTAGGTGCTATTTTGTTGCTTCTCAGAAAAAATTATTCATTCTTATTCTGCTGATTCATGTTACAGATTTCAAGAAAGAACTAAGAGCACTTAACAGAGAATTGCAGCTACATATATTGGAGCTTGCTGATGTTCTT</genome_strand>
        <mrna_strand>CGCCGGCTGTCGCTGCTCGCACGTCTTCTTCGTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATATAAGCCCAGAATTGTAGCTTATGTTTAGACCAAACTACAAATTGGTTTAAGGTGCCCCCGT-TACAATATACTATTGCAGAGCGAGTGCAGAGGTCTGATATTTCTCGTCCAAGTGTCGACTCAACGCCGAGAGAAGTCACCTTTTTTTGTTTAAAAAAACCTCGAAACTGCCCTTTGGCTCATCTTAATGTAACTATTATTGGGACAGAGAAGATAAGAACATTGTTTTTGTGAAATCAGATGTCGACAGCGACATACCCACCACCTCCTCCGTTTTACAGGCTGTACAAGGACTATCTTCAAGACCCCAAGTCTGCTCCGGAACCTCCCCCTCCAATTGAGGGCACCTATGTCCTCTTTGGTAGCAACTACACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATGATGTACTCCCAAACTTGGAAGAGCAGGGCGTGCGTCAATTATACCCAAAAGGGCCTAATGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAAGAAAGAACTAAGAGCACTTAACAGAGAATTGCAGCTACATATATTGGAGCTTGCTGATGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614600" ref_strand="+" ref_description="SGN-E614600 [64389]">
      <seq>ctgcggttgcgccggctgtcgctgctcgcacgtcttcttcgttttcagctgatataagcccagaattgtagcttatgtttagaccaaactacaaattggtttaaggtgcccccgttacaatatactattgcagagcgagtgcagaggtctgatatttctcgtccaagtgtcgactcaacgccgagagaagtcacctttttttgtttaaaaaaacctcgaaactgccctttggctcatcttaatgtaactattattgggacagagaagataagaacattgtttttgtgaaatcagatgtcgacagcgacatacccaccacctcctccgttttacaggctgtacaaggactatcttcaagaccccaagtctgctccggaacctccccctccaattgagggcacctatgtcctctttggtagcaactacactactgatgatgtactcccaaacttggaagagcagggcgtgcgtcaattatacccaaaagggcctaaatgttgatttcaagaaaagaactaaggagcacttaacagagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="86967" stop="82936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86670" g_stop="86623" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.854"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86622" i_stop="84848" i_length="1775">
            <donor d_prob="0.997" d_score="0.85"/>
            <acceptor a_prob="0.954" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84847" g_stop="84467" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="429" r_length="381" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84466" i_stop="83866" i_length="601">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83865" g_stop="83796" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="500" r_length="71" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83795" i_stop="83273" i_length="523">
            <donor d_prob="0.462" d_score="0.92"/>
            <acceptor a_prob="0.956" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83272" g_stop="83234" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="541" r_length="41" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E614600" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86670" e_stop="86623"/>
          <exon e_start="84847" e_stop="84467"/>
          <exon e_start="83865" e_stop="83796"/>
          <exon e_start="83272" e_stop="83234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGTTGCCGCCGGTTGTCGCTGCTCGCACGTCTTC-TCTTTTTCAGGTGAGTTCGATTATTGTGTGTTTTAATTCTTTCCAAAAGGAACAATTGAAGATGAAGAAAAATCTGTTGAATTTTTAACTTGAAAAGAACTGAACTATACACACCATAATTGAATCCATACTAGTTCGAAGCGTGATTTATGCTAGTTGAAGATGTGATTTGGATTATCATTATGATAATCATTTCTCTATATTTGAAGTTTTTGAACTCAATGTTCTTAGGTTAATTAGATATTTATGAGTCAATTGATTTTTGAATGAACCATTGCATAAAAATCAATTGTCGATGGTTACTTGTTAGGTTAAATAGGTTTCTGCTGCTGATTGTTTTTGTCGATCTTTAAGTTTTATATAGCTGTACTTTGAGATAGAAGGAAGGTGTTTGAGCTATGAGAAATTCATTCAGCTTGTAAGTTTTTGATTTGCTTCACCTGGAACTCAATTCGAAGCTAGCCTAACTTATTTTTCTGTTTATTTGTCCCTGGGCACATAAGTAGAAAGTTTGAGTATCTTCTCTTTACAAGAAAAACCTGAGTTATGTGGCACTTTAGACTACAAATTGTATTTTATACCTGACAGATACTATTGTAGGGCATATAATTTAGTTAGATTCGTTTTTGGTTCTGCTTTGGGCTGTATTTCCTTGAGACGAGGGTCGGGAACCACCTCTCTAACTCTGAGGTAGGGGTAAGGTTTGCGCGCTCTAAACCTTTGGGTATTTTGTTGTTGTAGATTTTATTGTAGTGCATATGGTATTACGTCAACATATTGAGTGTGTTCCCATAGTGGGGTCTGGGGAGGGCACTAACCTTCTTCTCCCACATAAAGTGCTACAACACACTGCTACTTACAAGACTTCTACCCTAGTCCTCGACCTCGAAACTTTCCTATATAGGGTCATATTCCTAGTAAGTTGAAGTTGTGTCATGTAGGGTTGAATCACCTTCCCCTTGTTCTTTTATGACCTATCCCTGCCTTTCTAACTCCTGTTCCGCCAATATTGGACTAGCACAGTTACCATTTAATCATTGAACAGTGAAATAGCCTTTCCATGAGAAATCTTTGAAACAGAAAAAATGAACTGCTTAAAATCATGGTGAGAATTTCGATGCACCAAAAGAAAAGTATCATGACAAAACCGAGCAGTCACTTAACACTAGAAAGGATCACAAACTACTCTAATGACAGTTACATATGTAACATGGGTATCTTCTCTGGTACTCGAATGAAATGAACATTCTTCTAGTTTTAAGTATACATTTAGTCTAAGTTGCTCTGATTCTGCACTTTTGGTGCCACACCCGTGTCGACACGACATGGGTGTGGGATCTTTGTCCGATTTGGTCAACTGATTTTGGGTACTTTGACCAAAATATATGGGGAAAGTCTTGACAGTTCTAAGATTTCTGTAATCAATACAAAAGCTAAGGTGAATTGAAGAAAATGGAATACCTTTTATATAGAAATTTCTTTGTCTTTCCTTTTCGTTTAATCTCCTTCCAAGATTCTCCTCAAGTTCTCCACATAATATAGGTTTTATAACTCTATTTTTAGGCGAATCCCTGCACCCGTATCCATACATAGATTCATATCCCCAAATCTTAAATTTAGATCTTGAAGGATCCAACCTCTGGATCCACACCCGTATCAGACACCCGCACCCGAGTTCGAGCAACTTAGCATTTAGTTCTCCTTTCTTCAGATTGTATATTATAAACTTGTTTTGATACTTTGACCCCTCTGACTTTTGAAATTGTTGCTTTTTATGTACTGCAGCTGATATAAGCCCAAAATTGTAGCTTATGTTTGGACTAAACTACAAATTGG-TTAAGGTGCTCCCATCGACAATACACTATTGGAGAACGAGTGCAGAGGTCTGATATTTCTCGTTCAAGTGTCGACTCAACGCCGAGAGAAGTCGCCTTTTTTGGTTGAGAAAAACCTCGAAACTGCCCTTTGGCTCATCTTAATGTAACTATTATTGTGACAGAGAAGATAAGAACATTGTTTTTGTGAAATCAGATGTCGACAGCAACATACCCACCACCCCCTCCGTTTTATAGGCTGTACAAGGACTATCTTCAAGACCCCAAGTCTGCTCCGGAACCTCCCCCTCCAATTGAGGGCACCTATGTCCTCTTTGGTAGCAACTACACTGTAAAGTCTCTGACCCGTTCTTCTACTCCCTTTTGAAATCCACCCCCAAATGGGGAAAAGGGGTGAAAAAGTCATGATACCCAATTGCTTACTTGTGCTTAATGTGGATGTATGAATGTATAAGGTGTCTTTGAGGCCCATTCAAGTTACTGGGTAGCTCTTTACCTCGAAAGATTTGCTTTTACTTTAAAGATTGAACCATGTTCTCAGTTTCTTCACTTTCATATACTTTATATTGCTTTTGGGGTAAAGGTATGGATTTAATTCAATGCGCGCTTAAAAAAATACAAAAGATTAGAGGGGGAAAATGTCTGATGCTAAGGTGAGGTTCAGTGAGATATTCAACAATGATTTAGATTTTATCTATTCTGAAATATGAATGAGGTTTCCATTAACATTCTCACCTTTATCTTATGTCATCTTGAGCTGCAACGCATCAAGAATCTTTATTCTGGTCACTCCTCTCAGTCCTCTGTGTTCTTGTCTTTTGTGAATTTTGTTTGTCAGTTGTGTTGCTGAAATTAAGTTGTCGTTGTGGTTTTTATTAGATAGCTATGTGCAAGTTTGCTCATTATTTATTTTGGCATTACCGTTTGCGCAGACTGATGATGTACTCCCAAATTTGGAAGAGCAGGGTGTGCGTCAGTTATACCCAAAAGGGCCT-AATGTTGGTAATGTTTGCAGCTATTCTCAAAAAGCCGTATTTGTTCCTACTGTGATATGTAACATGCATATCTTTTTTAAACATTTATGGTTAAAAGAATTTAAGTATGTGGATACACACATTTGTACCTTATATATCATCCTGCATTTTCGATATGAATCTGCATGGAACATGACACTCGTTTTTGTTTCCTTATCGTAAGTTCCAAGTAAATATCCTCTACAAGGTCAATCGATATGTCTAATCATTTCTGTTCTCTTTCTCTAAGCCAGTGACCAGAATAAATAAAAGGGAAATAGATATAAAGTTTGAGCCCTTTAGGTTATTCAAAGTCTTAGACAAAAGATTGCAAATCAAGTATCCTATGCATTGCAAAAGTTAATTGCAGAATCAATTCCATAGTTGAAACGATGATGTCCCCTTTATTGGGTGCTGCTGCATATGGGATGCTTCCAGAGATAAATTTAGGTGCTATTTTGTTGCTTCTCAGAAAAAATTATTCATTCTTATTCTGCTGATTCATGTTACAGATTTCAAG-AAAGAACTAA-GAGCACTTAACAGAGAATTGC</genome_strand>
        <mrna_strand>CTGCGGTTGC-GCCGGCTGTCGCTGCTCGCACGTCTTCTTCGTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATATAAGCCCAGAATTGTAGCTTATGTTTAGACCAAACTACAAATTGGTTTAAGGTGCCCCCGT-TACAATATACTATTGCAGAGCGAGTGCAGAGGTCTGATATTTCTCGTCCAAGTGTCGACTCAACGCCGAGAGAAGTCACCTTTTTTTGTTTAAAAAAACCTCGAAACTGCCCTTTGGCTCATCTTAATGTAACTATTATTGGGACAGAGAAGATAAGAACATTGTTTTTGTGAAATCAGATGTCGACAGCGACATACCCACCACCTCCTCCGTTTTACAGGCTGTACAAGGACTATCTTCAAGACCCCAAGTCTGCTCCGGAACCTCCCCCTCCAATTGAGGGCACCTATGTCCTCTTTGGTAGCAACTACACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATGATGTACTCCCAAACTTGGAAGAGCAGGGCGTGCGTCAATTATACCCAAAAGGGCCTAAATGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAAGAAAAGAACTAAGGAGCACTTAACAGAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468935" ref_strand="+" ref_description="SGN-E468935 [cSTB-9-B16]">
      <seq>ttcttttttagctgatttaagcccaaaattgtaacttagggttggaccaaactacaaattggtttaaggtgctcccgtcaacaatacactattgcagagcgagtgcataggtctgatatttctcgtccaagtgtcgactcaacgccgagagaagtcaccttttttggtttaaaaaaacctcgaaactgccctttggctcatcttaatgtaactattattgggacagagaagataagaacattgtttttgtgaaatcagatgtcgacagcgacatacccaccacctcctccgttttacaggctgtacaaggactatcttcaagaccccaagtctgctccggaacctccccctccaattgaaggcacctatgttctctttggtagcaactacactactgatgatgtactcccaaacttggaagagcaaggcgtgcgccaattatacccaaaaaggcctaatgttgatttcaagaaagaactaagagcacttaacagagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="85157" stop="82936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84847" g_stop="84467" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="393" r_length="382" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84466" i_stop="83866" i_length="601">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83865" g_stop="83796" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="463" r_length="70" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83795" i_stop="83273" i_length="523">
            <donor d_prob="0.462" d_score="0.88"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83272" g_stop="83236" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="500" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E468935" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84847" e_stop="84467"/>
          <exon e_start="83865" e_stop="83796"/>
          <exon e_start="83272" e_stop="83236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATATAAGCCCAAAATTGTAGCTTATGTTTGGACTAAACTACAAATTGGT-TAAGGTGCTCCCATCGACAATACACTATTGGAGAACGAGTGCAGAGGTCTGATATTTCTCGTTCAAGTGTCGACTCAACGCCGAGAGAAGTCGCCTTTTTTGGTTGAGAAAAACCTCGAAACTGCCCTTTGGCTCATCTTAATGTAACTATTATTGTGACAGAGAAGATAAGAACATTGTTTTTGTGAAATCAGATGTCGACAGCAACATACCCACCACCCCCTCCGTTTTATAGGCTGTACAAGGACTATCTTCAAGACCCCAAGTCTGCTCCGGAACCTCCCCCTCCAATTGAGGGCACCTATGTCCTCTTTGGTAGCAACTACACTGTAAAGTCTCTGACCCGTTCTTCTACTCCCTTTTGAAATCCACCCCCAAATGGGGAAAAGGGGTGAAAAAGTCATGATACCCAATTGCTTACTTGTGCTTAATGTGGATGTATGAATGTATAAGGTGTCTTTGAGGCCCATTCAAGTTACTGGGTAGCTCTTTACCTCGAAAGATTTGCTTTTACTTTAAAGATTGAACCATGTTCTCAGTTTCTTCACTTTCATATACTTTATATTGCTTTTGGGGTAAAGGTATGGATTTAATTCAATGCGCGCTTAAAAAAATACAAAAGATTAGAGGGGGAAAATGTCTGATGCTAAGGTGAGGTTCAGTGAGATATTCAACAATGATTTAGATTTTATCTATTCTGAAATATGAATGAGGTTTCCATTAACATTCTCACCTTTATCTTATGTCATCTTGAGCTGCAACGCATCAAGAATCTTTATTCTGGTCACTCCTCTCAGTCCTCTGTGTTCTTGTCTTTTGTGAATTTTGTTTGTCAGTTGTGTTGCTGAAATTAAGTTGTCGTTGTGGTTTTTATTAGATAGCTATGTGCAAGTTTGCTCATTATTTATTTTGGCATTACCGTTTGCGCAGACTGATGATGTACTCCCAAATTTGGAAGAGCAGGGTGTGCGTCAGTTATACCCAAAAGGGCCTAATGTTGGTAATGTTTGCAGCTATTCTCAAAAAGCCGTATTTGTTCCTACTGTGATATGTAACATGCATATCTTTTTTAAACATTTATGGTTAAAAGAATTTAAGTATGTGGATACACACATTTGTACCTTATATATCATCCTGCATTTTCGATATGAATCTGCATGGAACATGACACTCGTTTTTGTTTCCTTATCGTAAGTTCCAAGTAAATATCCTCTACAAGGTCAATCGATATGTCTAATCATTTCTGTTCTCTTTCTCTAAGCCAGTGACCAGAATAAATAAAAGGGAAATAGATATAAAGTTTGAGCCCTTTAGGTTATTCAAAGTCTTAGACAAAAGATTGCAAATCAAGTATCCTATGCATTGCAAAAGTTAATTGCAGAATCAATTCCATAGTTGAAACGATGATGTCCCCTTTATTGGGTGCTGCTGCATATGGGATGCTTCCAGAGATAAATTTAGGTGCTATTTTGTTGCTTCTCAGAAAAAATTATTCATTCTTATTCTGCTGATTCATGTTACAGATTTCAAGAAAGAACTAAGAGCACTTAACAGAGAATT</genome_strand>
        <mrna_strand>CTGATTTAAGCCCAAAATTGTAACTTAGGGTTGGACCAAACTACAAATTGGTTTAAGGTGCTCCCGTCAACAATACACTATTGCAGAGCGAGTGCATAGGTCTGATATTTCTCGTCCAAGTGTCGACTCAACGCCGAGAGAAGTCACCTTTTTTGGTTTAAAAAAACCTCGAAACTGCCCTTTGGCTCATCTTAATGTAACTATTATTGGGACAGAGAAGATAAGAACATTGTTTTTGTGAAATCAGATGTCGACAGCGACATACCCACCACCTCCTCCGTTTTACAGGCTGTACAAGGACTATCTTCAAGACCCCAAGTCTGCTCCGGAACCTCCCCCTCCAATTGAAGGCACCTATGTTCTCTTTGGTAGCAACTACACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATGATGTACTCCCAAACTTGGAAGAGCAAGGCGTGCGCCAATTATACCCAAAAAGGCCTAATGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAAGAAAGAACTAAGAGCACTTAACAGAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554340" ref_strand="+" ref_description="SGN-E554340 [cTSC-3-P5]">
      <seq>aaacagagtaactgatcgttttcgtgtgaaatcttgagagaatcgggtaatcaaaaaccgaaagcttcggtttttccgtttgttaagcagaaatattctcagatagctaaatcgttactatttggattgtaagggaggaaatgaaataattgcgaagaaatcgaagaaagggggagaaagattgagtggtgctggtgaagtttagtccagtatgaacaacattgaaatgggttgtttaaagtctgatgataacgatgagattcattccaatgtttctgttcggaagcgatttaagtttcccaaaaagttttttgatgagtgtaatggagtagatcatgcttctgttcctcggaaagttcgttcagttatcaagaagagaattcgcaagctcatctctccacctttgccgatttccaaaaaggcgaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggatgagcttgattgtccaatcacccaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccatatgttgacaccttgagcgaaagcaaaataaatagtccaactttcctgaagtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="87630" stop="90496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87930" g_stop="88054" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88055" i_stop="89082" i_length="1028">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89083" g_stop="89264" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="307" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89265" i_stop="89344" i_length="80">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89345" g_stop="89402" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="365" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89403" i_stop="89780" i_length="378">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89781" g_stop="89902" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="487" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89903" i_stop="90035" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90036" g_stop="90196" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="650" r_length="163" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E554340" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87930" e_stop="88054"/>
          <exon e_start="89083" e_stop="89264"/>
          <exon e_start="89345" e_stop="89402"/>
          <exon e_start="89781" e_stop="89902"/>
          <exon e_start="90036" e_stop="90196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGGGTAAATCAAAAATTTATTCTTTTTGTTTGTTTGTTTGTTCTTGTTCAGTTATGAGTTGTTGCAACAGATTGTAAGCTGGATTAATTTTTTTTTTCATGATTCTCTGTTGTTTGTTCATGGAAATGACTGAGTTTTTTGTTTTCTGCATTTTGAATTTTTGCGTTTTCGATCTGAAAGAGTGATGAGATTATGCTTTTTCTGAAGAAAATGTACGTTTGATCTATATAATCTGATATGTTGATCTGTTTTAATGGGGTTTTGTTGATGAATAGAGATGGTACTGTAATTTCTCTACATGGGGTTGATTTTTTTTAGGTACTTTGCGTGTGTGTTGTCTTTCTCTTTCTCTCTCTCTCTCTTTCTTTTTGGGGGTTGATGAGTACGAGTGTGACAGACTCACAGTGAGAGAGCGGCTTTATTATGTGAAGAAGAACCCGATTCGTTGTACATAAAGGACCAAATTCAGTTTTCTTCTTCTTCTTCCCTTTTTAACCATTTTTAGAGTTTTTAAATGTTAGTACTGTAAAACCCAAAAGCCTTTAATGTTTCTGTATCGGGTTTTTAGATTCACTACCAAAAGTTCTGAATTTTGGAGGTTCTTGTTTGATGATTAGAGAATTGATTGTAGCTGGGTCTGGAAAAAAAATTGTTTTCAATTCAATTTTGTTGCAGTATTTTTTTTCCAGAAATGGACAAGAATCGGTAATGCTTAAGTGTGAAAGTGAATTTTATTGTTTCGTCTTTGTATTAAAATCAAACGGTTACTAGACAACAAGACCCATCAATGCGTCTATTGTCTGTTTCTGCAAATATATTCTTATTCTTATTCATCTATATGTGGATTTTGGTGTTTGCGAGGTTGAGAAACGCGTGTCGTCTTGTATTCCTCCTTTTCTCCTCTCTTTTTTTCTTTTTTGGTTATCTGTTACAGTTCTTTATCCTTCTTTTTGTTTTGATTTTTCTTGTGATTTCTGCTTTCCACACAAAATTCTCTGATAATATTTCTGGGTTTTGCTTTGAATGCTTAGATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAGGTTTGATATTTTAGCTCAATTAAGTATATTGTAAATAGGTATTGGTCTGTTAAATTCATTAACCCCTTTTGGATTTGCAGTTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAGGTTTGTATTTTTGTGAATCAAATTTGGAAATTACTGACTTGCTTATGTTTGTTATCTTATTTGGAATAGTTATGTGTTAGTTGGAGCCCAGTGCTTGGAAGTGGGTCACTTGTTGCTTTATTTTGTAAATTATAGTAAATTCCTTTTCACCTTTTCTTTCTTTTTAAGCATGAGAAGATTCTGTAAGTTTCTTCGTCTTATTTCGCTTTTTAAACCTTTGGAATCATTAAAAAGTACTTAATCTGCAATTTGGGTGATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGT-CAAC-TTCCTGAAGTGAA</genome_strand>
        <mrna_strand>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAG................................................................................TTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGATGAGCTTGATTGTCCAATCACCCAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCATATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCCAACTTTCCTGAAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458541" ref_strand="+" ref_description="SGN-E458541 [cPRO-6-G7]">
      <seq>gttatctgttacagttctttatccttctttttgttttgattttacttgtgatttctgtttttcacacaaaattctctgataatatttctgggttttgctttggatgcttagattgtaagggaggaaatgaaataattgcgaagaaagtggaagaggggaaatttagtggtgttggtgaagtctaatccagtatgaacaacattgaaatgggttgttcaaggtctgatgataacgatgagattcatcccaatgtttctgttcggaagcgatttaagtttcccaaaaagttttttgatgagtgtaatggagtagatcatgcttctgttcctcggaaagttcgttcagctatcaagaagagaattcgcaagctcatctctccacctttgccgatttccaaaaaggcgactcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggaggagcttgatggtccaatcaccaaagatgaagaggaagtggctgaaaccttgtatgctttggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="88672" stop="90432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88972" g_stop="89264" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89265" i_stop="89344" i_length="80">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89345" g_stop="89402" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="345" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89403" i_stop="89780" i_length="378">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89781" g_stop="89902" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="467" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89903" i_stop="90035" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90036" g_stop="90132" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="564" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E458541" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88972" e_stop="89264"/>
          <exon e_start="89345" e_stop="89402"/>
          <exon e_start="89781" e_stop="89902"/>
          <exon e_start="90036" e_stop="90132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCTGTTACAGTTCTTTATCCTTCTTTTTGTTTTGATTTTTCTTGTGATTTCTGCTTTCCACACAAAATTCTCTGATAATATTTCTGGGTTTTGCTTTGAATGCTTAGATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAGGTTTGATATTTTAGCTCAATTAAGTATATTGTAAATAGGTATTGGTCTGTTAAATTCATTAACCCCTTTTGGATTTGCAGTTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAGGTTTGTATTTTTGTGAATCAAATTTGGAAATTACTGACTTGCTTATGTTTGTTATCTTATTTGGAATAGTTATGTGTTAGTTGGAGCCCAGTGCTTGGAAGTGGGTCACTTGTTGCTTTATTTTGTAAATTATAGTAAATTCCTTTTCACCTTTTCTTTCTTTTTAAGCATGAGAAGATTCTGTAAGTTTCTTCGTCTTATTTCGCTTTTTAAACCTTTGGAATCATTAAAAAGTACTTAATCTGCAATTTGGGTGATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTG</genome_strand>
        <mrna_strand>GTTATCTGTTACAGTTCTTTATCCTTCTTTTTGTTTTGATTTTACTTGTGATTTCTGTTTTTCACACAAAATTCTCTGATAATATTTCTGGGTTTTGCTTTGGATGCTTAGATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAA--G-TGGAAGAGGG-G-AA-ATTTAGTGGTGTTGGTGAAGTCTAATCCAGTATGAACAACATTGAAATGGGTTGTTCAAGGTCTGATGATAACGATGAGATTCATCCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAG................................................................................TTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................CTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGACTCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATGGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590191" ref_strand="+" ref_description="SGN-E590191 [43781]">
      <seq>gtcttctttcgctttttatacctttggaatcattaaaaagtacttaatctgcaatgttgggtgattgtactggccaagtttctgattttactctcttattaggtgaaatggttcttgtttgagttaaactttggacttccaattgatcataagttgttcacttggatccttttccctttgtagttatcaagaagagaattcgcaagctcatctctccacctttgccgatttccaaaaaggcaaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggaggagcttgatggtccaatcaccaaagatgaagaggaagtggcagaaaccttggtatgctttggctggtatgatcccagacgttgacaccttggagcgaaagcaaaataaatagtcaacttccggaagtgaaatctttggacttaccggaacctgaggcttctgtaattgcaagtggagttgtaacaacagagcaggacataaggacaaacaggtcccaattcagtgctgaagctttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="89297" stop="90690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89597" g_stop="89902" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89903" i_stop="90035" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90036" g_stop="90243" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="515" r_length="210" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90244" i_stop="90328" i_length="85">
            <donor d_prob="0.886" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90329" g_stop="90390" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="577" r_length="62" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E590191" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89597" e_stop="89902"/>
          <exon e_start="90036" e_stop="90243"/>
          <exon e_start="90329" e_stop="90390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTATTTCGCTTTTTAAACCTTTGGAATCATTAAAAAGTACTTAATCTGCAAT-TTGGGTGATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTT-GTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTT-GAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAG</genome_strand>
        <mrna_strand>GTCTTCTTTCGCTTTTTATACCTTTGGAATCATTAAAAAGTACTTAATCTGCAATGTTGGGTGATTGTACTGGCCAAGTTTCTGATTTTACTCTCTTATTAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAGTTG-TT-CACTTGGATCCTTTTCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCAAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATGGTCCAATCACCAAAGATGAAGAGGAAGTGGCAGAAACCTTGGTATGCTTTGGCTGGTATGATCCCAGACGTTGACACCTTGGAGCGAAAGCAAAATAAATAGTCAACTTCCGGAAGTGAAATCTTTGGACTTACCGGAACCTGAGGCTTCTGTAATTGCAAGTGGAG.....................................................................................TTGTAACAACAGAGCAGGACATAAGGACAAACAGGTCCCAATTCAGTGCTGAAGCTTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375604" ref_strand="+" ref_description="SGN-E375604 [TUS-35-C1]">
      <seq>gattgtactggccaagtttctggttttaatctcttataagttatcaagaagagaattcgcaagctcatctctccacctttgccgatttccaaaaaggcgaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggaggagcttgattgtccaatcaccaaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccagatgttgacaccttgagcgaaagcaaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcaacacagagcagctagaaatttcatcgcaacaagttgttgcttatcaagccaacaaacaaaacacacacaaggagaataggaataatggttcattgttgtggccaggcttgtctgcagcagggtcatcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="89358" stop="91104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89658" g_stop="89697" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89698" i_stop="89780" i_length="83">
            <donor d_prob="0.476" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89781" g_stop="89902" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="162" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89903" i_stop="90035" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90036" g_stop="90243" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="370" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90244" i_stop="90328" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90329" g_stop="90507" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="549" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90508" i_stop="90582" i_length="75">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90583" g_stop="90637" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="604" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90638" i_stop="90760" i_length="123">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90761" g_stop="90804" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="648" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E375604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89658" e_stop="89697"/>
          <exon e_start="89781" e_stop="89902"/>
          <exon e_start="90036" e_stop="90243"/>
          <exon e_start="90329" e_stop="90507"/>
          <exon e_start="90583" e_stop="90637"/>
          <exon e_start="90761" e_stop="90804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAAGTAACTTTTGTTTGGACATCTATACTCTTTGGTTAATACGTGACAGAAATGCTGATCTTACTGTTCTGTATTCAGGTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATGGTATAACTATAGCCTGCAAGTTTCAAATTTTCTGATGACTGGTTGTAATATATCCGAGACGGTGTCATCCAAATCATGTGTATTTTATATCTACATTAACAGAAATGTTGTTTTGGCGATCAGGTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGT</genome_strand>
        <mrna_strand>GATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAG...................................................................................TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA...........................................................................GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG...........................................................................................................................GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255230" ref_strand="+" ref_description="SGN-E255230 [cLEG-31-L7]">
      <seq>gattgtactggccaagtttctggttttaatctcttataagttatcaagaagagaattcgcaagctcatctctccacctttgccgatttccaaaaaggcgaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggaggagcttgattgtccaatcaccaaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccagatgttgacaccttgagcgaaagcaaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcaacacagagcagctagaaatttcatcgcaacaagttgttgcttatcaagccaacaaacaaaacacacacaaggagaataggaataatggttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="89358" stop="90945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89658" g_stop="89697" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89698" i_stop="89780" i_length="83">
            <donor d_prob="0.476" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89781" g_stop="89902" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="162" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89903" i_stop="90035" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90036" g_stop="90243" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="370" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90244" i_stop="90328" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90329" g_stop="90507" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="549" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90508" i_stop="90582" i_length="75">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90583" g_stop="90637" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="604" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90638" i_stop="90760" i_length="123">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90761" g_stop="90767" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="611" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E255230" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89658" e_stop="89697"/>
          <exon e_start="89781" e_stop="89902"/>
          <exon e_start="90036" e_stop="90243"/>
          <exon e_start="90329" e_stop="90507"/>
          <exon e_start="90583" e_stop="90637"/>
          <exon e_start="90761" e_stop="90767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAAGTAACTTTTGTTTGGACATCTATACTCTTTGGTTAATACGTGACAGAAATGCTGATCTTACTGTTCTGTATTCAGGTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATGGTATAACTATAGCCTGCAAGTTTCAAATTTTCTGATGACTGGTTGTAATATATCCGAGACGGTGTCATCCAAATCATGTGTATTTTATATCTACATTAACAGAAATGTTGTTTTGGCGATCAGGTTCATT</genome_strand>
        <mrna_strand>GATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAG...................................................................................TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA...........................................................................GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG...........................................................................................................................GTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255555" ref_strand="+" ref_description="SGN-E255555 [cLEG-30-L4]">
      <seq>gattgtactggccaagtttctggttttaatctcttataagttatcaagaagagaattcgcaagctcatctctccacctttgccgatttccaaaaaggcgaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggaggagcttgattgtccaatcaccaaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccagatgttgacaccttgagcgaaagcaaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcaacacagagcagctagaaatttcatcgcaacaagttgttgcttatcaagccaacaaacaaaacacacacaaggagaataggaataatggttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="89358" stop="90945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89658" g_stop="89697" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89698" i_stop="89780" i_length="83">
            <donor d_prob="0.476" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89781" g_stop="89902" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="162" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89903" i_stop="90035" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90036" g_stop="90243" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="370" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90244" i_stop="90328" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90329" g_stop="90507" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="549" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90508" i_stop="90582" i_length="75">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90583" g_stop="90637" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="604" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90638" i_stop="90760" i_length="123">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90761" g_stop="90767" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="611" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E255555" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89658" e_stop="89697"/>
          <exon e_start="89781" e_stop="89902"/>
          <exon e_start="90036" e_stop="90243"/>
          <exon e_start="90329" e_stop="90507"/>
          <exon e_start="90583" e_stop="90637"/>
          <exon e_start="90761" e_stop="90767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAAGTAACTTTTGTTTGGACATCTATACTCTTTGGTTAATACGTGACAGAAATGCTGATCTTACTGTTCTGTATTCAGGTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATGGTATAACTATAGCCTGCAAGTTTCAAATTTTCTGATGACTGGTTGTAATATATCCGAGACGGTGTCATCCAAATCATGTGTATTTTATATCTACATTAACAGAAATGTTGTTTTGGCGATCAGGTTCATT</genome_strand>
        <mrna_strand>GATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAG...................................................................................TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA...........................................................................GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG...........................................................................................................................GTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255376" ref_strand="+" ref_description="SGN-E255376 [cLEG-30-H9]">
      <seq>aagtttctggttttaatctcttattaggtgaattggttcttgtttgagttaaactttggactggcaattgatcataaattgtttgcttttggatcctttgccctttgtagttatcaagaagagaattcgcaagctcatctctccacctttgccgatttccaaaaaggcgaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggaggagcttgattgtccaatcaccaaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccagatgttgacaccttgagcgaaagcaaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcaacacagagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="89371" stop="90787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89671" g_stop="89902" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89903" i_stop="90035" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90036" g_stop="90243" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="440" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90244" i_stop="90328" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90329" g_stop="90487" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="599" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E255376" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89671" e_stop="89902"/>
          <exon e_start="90036" e_stop="90243"/>
          <exon e_start="90329" e_stop="90487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGC</genome_strand>
        <mrna_strand>AAGTTTCTGGTTTTAATCTCTTATTAGGTGAATTGGTTCTTGTTTGAGTTAAACTTTGGACTGGCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378710" ref_strand="+" ref_description="SGN-E378710 [TUS-35-C1]">
      <seq>ttcgcaagctcatctctccacctttgccgatttccaaaaaggcgaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcggggcggtgtataaaggaagagcttgattgtccaatcaccaaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccagatgttgacaccttgagcgaaagcaaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcggcagagagcgggtanaaatttcatcgcaacaagttgttgcttatcaagccaacaaacaaaacacacacaaggagaataggaataatggttcattgttgtggccaggcttgtctgcagcagggtcatcttgttccgacatacttgattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="89496" stop="91122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89796" g_stop="89902" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89903" i_stop="90035" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90036" g_stop="90243" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="315" r_length="208" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90244" i_stop="90328" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90329" g_stop="90507" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="494" r_length="179" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90508" i_stop="90582" i_length="75">
            <donor d_prob="0.866" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90583" g_stop="90637" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="549" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90638" i_stop="90760" i_length="123">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90761" g_stop="90822" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="611" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E378710" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89796" e_stop="89902"/>
          <exon e_start="90036" e_stop="90243"/>
          <exon e_start="90329" e_stop="90507"/>
          <exon e_start="90583" e_stop="90637"/>
          <exon e_start="90761" e_stop="90822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAAGTAACTTTTGTTTGGACATCTATACTCTTTGGTTAATACGTGACAGAAATGCTGATCTTACTGTTCTGTATTCAGGTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATGGTATAACTATAGCCTGCAAGTTTCAAATTTTCTGATGACTGGTTGTAATATATCCGAGACGGTGTCATCCAAATCATGTGTATTTTATATCTACATTAACAGAAATGTTGTTTTGGCGATCAGGTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCT</genome_strand>
        <mrna_strand>TTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCGGGGCGGTGTATAAAGGAAGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCGGCAGAGAGCGGGTANAAATTTCATCGCAACAA...........................................................................GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG...........................................................................................................................GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248048" ref_strand="+" ref_description="SGN-E248048 [cLEF-47-B21]">
      <seq>tttgccgatttccaaaaaggcgaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggaggagcttgattgtccaatcaccaaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccagatgttgacaccttgagcgaaagcaaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcaacacagagcagctagaaatttcatcgcaacaagttgttgcttatcaagccaacaaacaaaacacacacaaggagaataggaataatggttcattgttgtggccaggcttgtctgcagcagggtcatcttgttccgacatacttgattcttcaccacagtttccaattggcaaatttcctgtctggatcgggagcgctggcactgatcatcaagctcaaaatgcaaaatcttgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="89518" stop="91285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89818" g_stop="89902" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89903" i_stop="90035" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90036" g_stop="90243" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="293" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90244" i_stop="90328" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90329" g_stop="90507" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="472" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90508" i_stop="90582" i_length="75">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90583" g_stop="90637" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="527" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90638" i_stop="90760" i_length="123">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90761" g_stop="90830" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="597" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90831" i_stop="90906" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90907" g_stop="90985" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="676" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E248048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89818" e_stop="89902"/>
          <exon e_start="90036" e_stop="90243"/>
          <exon e_start="90329" e_stop="90507"/>
          <exon e_start="90583" e_stop="90637"/>
          <exon e_start="90761" e_stop="90830"/>
          <exon e_start="90907" e_stop="90985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAAGTAACTTTTGTTTGGACATCTATACTCTTTGGTTAATACGTGACAGAAATGCTGATCTTACTGTTCTGTATTCAGGTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATGGTATAACTATAGCCTGCAAGTTTCAAATTTTCTGATGACTGGTTGTAATATATCCGAGACGGTGTCATCCAAATCATGTGTATTTTATATCTACATTAACAGAAATGTTGTTTTGGCGATCAGGTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACAGTAAGTTCCCATTTCTTACCGCACTCTTCCTTGCCTACAAATATTGTTTGGTTTCTCATGCACCGAGTAATGATAGGTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTA</genome_strand>
        <mrna_strand>TTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA...........................................................................GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG...........................................................................................................................GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA............................................................................GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709386" ref_strand="+" ref_description="SGN-E709386 [FA51DA05]">
      <seq>cgttaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccagacgttgacaccttgagcgaaagcaaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcaacacagagcagctagaaatttcatcgcaacaagttgttgcttatcaagccaacaaacaaaacacacacaaggagaataggaataatggttcattgttgtggccaggcttgtctgcagcagggtcatcttgttccgacatacttgattcttcaccacagtttccaattggcaaatttcctgtctggatcgggagcgctggcactgatcatcaagctcaaaatgcaaaatcttgtctaccaaccatgaaggattctcaagttccacttgagttgaggaagccatttaagaggtgtgctgctccatgtttatataagtccggctaactaagggcttacagacttccatgagaggtgacacagtctccttcgcatccttctcagtcctcaccctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="89791" stop="91533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90087" g_stop="90243" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90244" i_stop="90328" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90329" g_stop="90507" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="336" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90508" i_stop="90582" i_length="75">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90583" g_stop="90637" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="391" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90638" i_stop="90760" i_length="123">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90761" g_stop="90830" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="461" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90831" i_stop="90906" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90907" g_stop="90997" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="552" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90998" i_stop="91093" i_length="96">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91094" g_stop="91233" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="696" r_length="144" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E709386" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90087" e_stop="90243"/>
          <exon e_start="90329" e_stop="90507"/>
          <exon e_start="90583" e_stop="90637"/>
          <exon e_start="90761" e_stop="90830"/>
          <exon e_start="90907" e_stop="90997"/>
          <exon e_start="91094" e_stop="91233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAAGTAACTTTTGTTTGGACATCTATACTCTTTGGTTAATACGTGACAGAAATGCTGATCTTACTGTTCTGTATTCAGGTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATGGTATAACTATAGCCTGCAAGTTTCAAATTTTCTGATGACTGGTTGTAATATATCCGAGACGGTGTCATCCAAATCATGTGTATTTTATATCTACATTAACAGAAATGTTGTTTTGGCGATCAGGTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACAGTAAGTTCCCATTTCTTACCGCACTCTTCCTTGCCTACAAATATTGTTTGGTTTCTCATGCACCGAGTAATGATAGGTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAGGTGTTTTAGCACTTCGATATAGCTTTCAGTTACTCTCATGTACTTTGTTCCATTCTGAACAACTATATGGAACACTCATTTGATTTGATTATGCAGGATTCTCAAGTTCCACTTGAGTTGAGGAAGTCATTTAAGAGGTGTGCTGCT-CATGTTTATATAAGT-CGGCTGACTAAGGGCTTACAGACTTCGATGAGAGGTGACACAGTCTCC-TCGCATCCTTCTCAGTCCTCA-CCTCC</genome_strand>
        <mrna_strand>CGTTAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGACGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA...........................................................................GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG...........................................................................................................................GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA............................................................................GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAG................................................................................................GATTCTCAAGTTCCACTTGAGTTGAGGAAGCCATTTAAGAGGTGTGCTGCTCCATGTTTATATAAGTCCGGCTAACTAAGGGCTTACAGACTTCCATGAGAGGTGACACAGTCTCCTTCGCATCCTTCTCAGTCCTCACCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703524" ref_strand="+" ref_description="SGN-E703524 [FA21DA05]">
      <seq>aaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcaacacagagcagctagaaatttcatcgcaacaagttgttgcttatcaagccaacaaacaaaacacacacaaggagaataggaataatggttcattgttgtggccaggcttgtctgcagcagggtcatcttgttccgacatacttgattcttcaccacagtttccaattggcaaatttcctgtctggatcgggagcgctggcactgatcatcaagctcaaaatgcaaaatcttgtctaccaaccatgaaggattctcaagttccacttgagttgaggaagtcatttaagaggtgtgctgctcatgtttatataagtcggctgactaagggcttacagacttcgatgagaggtgacacagtctcctcgcatccttctcagtcctcacctcctgatggagtgaagcaagagcctcctataattcagaacagcccaactgtaaaggtgaatgatatgcatggaattgtttctactgggaatgttgcctctactgttgagaagaatccaactgaagttagaaatgcaatccttttgcaccaaagactcctccaagatcagcaacaggcttctactacatctgggttcaattctttaccaaagcagaatgcagatttcctttcattgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="89868" stop="91836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90168" g_stop="90243" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90244" i_stop="90328" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90329" g_stop="90507" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="255" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90508" i_stop="90582" i_length="75">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90583" g_stop="90637" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="310" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90638" i_stop="90760" i_length="123">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90761" g_stop="90830" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="380" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90831" i_stop="90906" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90907" g_stop="90997" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="471" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90998" i_stop="91093" i_length="96">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91094" g_stop="91444" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="822" r_length="351" r_score="0.997"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91445" i_stop="91512" i_length="68">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91513" g_stop="91536" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="823" r_stop="846" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E703524" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90168" e_stop="90243"/>
          <exon e_start="90329" e_stop="90507"/>
          <exon e_start="90583" e_stop="90637"/>
          <exon e_start="90761" e_stop="90830"/>
          <exon e_start="90907" e_stop="90997"/>
          <exon e_start="91094" e_stop="91444"/>
          <exon e_start="91513" e_stop="91536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAAGTAACTTTTGTTTGGACATCTATACTCTTTGGTTAATACGTGACAGAAATGCTGATCTTACTGTTCTGTATTCAGGTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATGGTATAACTATAGCCTGCAAGTTTCAAATTTTCTGATGACTGGTTGTAATATATCCGAGACGGTGTCATCCAAATCATGTGTATTTTATATCTACATTAACAGAAATGTTGTTTTGGCGATCAGGTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACAGTAAGTTCCCATTTCTTACCGCACTCTTCCTTGCCTACAAATATTGTTTGGTTTCTCATGCACCGAGTAATGATAGGTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAGGTGTTTTAGCACTTCGATATAGCTTTCAGTTACTCTCATGTACTTTGTTCCATTCTGAACAACTATATGGAACACTCATTTGATTTGATTATGCAGGATTCTCAAGTTCCACTTGAGTTGAGGAAGTCATTTAAGAGGTGTGCTGCTCATGTTTATATAAGTCGGCTGACTAAGGGCTTACAGACTTCGATGAGAGGTGACACAGTCTCCTCGCATCCTTCTCAGTCCTCACCTCCTGATGGAGTGAAGCAAGAGCCTCCTATAATTCAGAACAGCCCAACTGTAAAGGTGAATGATATGCATGGAATTGTTTCTACTGGGAATGTTGCCTCTACTGTTGAGAAGAATCCAACTGAAGTTAGAAATGCAATCCTTTTGCACCAAAGACTCCTCCAAGATCAGCAACAGGCTTCTACTACATCTGGGTTCAATTCTTTAGCAAAGCAGGTTAGTTATCTTCAATAATGTGTGATATTCTTCATCCATACACGATAATAATCCTCTTTCTTTCGCAGAATGCAGATTTCCTTTCATTGTCA</genome_strand>
        <mrna_strand>AAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA...........................................................................GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG...........................................................................................................................GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA............................................................................GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAG................................................................................................GATTCTCAAGTTCCACTTGAGTTGAGGAAGTCATTTAAGAGGTGTGCTGCTCATGTTTATATAAGTCGGCTGACTAAGGGCTTACAGACTTCGATGAGAGGTGACACAGTCTCCTCGCATCCTTCTCAGTCCTCACCTCCTGATGGAGTGAAGCAAGAGCCTCCTATAATTCAGAACAGCCCAACTGTAAAGGTGAATGATATGCATGGAATTGTTTCTACTGGGAATGTTGCCTCTACTGTTGAGAAGAATCCAACTGAAGTTAGAAATGCAATCCTTTTGCACCAAAGACTCCTCCAAGATCAGCAACAGGCTTCTACTACATCTGGGTTCAATTCTTTACCAAAGCAG....................................................................AATGCAGATTTCCTTTCATTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375603" ref_strand="+" ref_description="SGN-E375603 [TUS-35-C1](-)">
      <seq>cagtacaagtttggtggagtctctacctcacaaatgcgagactggcaaaatgcagggcgaccaatgcctatctttggaccttctcaagctcaattggcagcttcttcttcctcgatggaagcactttcttccaagtatgttccacccttgttgaacgagcaggagcttatgtccatttttacgtcacgaactaattcaaggatcaaaggacaatattacagtttcccttctggcttggaaggaagtggacatggactctaccccaataatgtgccttcattgcagcttctttgcaatgatcgtcgttaatacggagagccatggcaccatgtccataatatcagagcgaaactcctgcaaatcataattgatttattcttttctttgcttatgcatgagagttggtgttcattctgttactgaatataaggaacacaaaaaagggaggatatagtaaatttcatgtcccttattagatgcttattctgtttcagtttcaattaattatagagtaacaacttcagaaatggttgttggtttttccctagatggaaagaaactttatgtgtctgagaaggttattgacttgtagtatacacaagaagaagaatggcaatgaaaaaaattgcagctgctttaaatttctttcagcaattttcaggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="92077" stop="93346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92377" g_stop="93050" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E375603" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92377" e_stop="93050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTACAAGTTTGGTGGAGTCTCTACCTCACAAATGCGAGACTGGCAAAATGCAGGGCGACCAATGCCTATCTTTGGACCTTCTCAAGCTCAATTGGCAGCTTCTTCTTCCTCGATGGAAGCACTTTCTTCCAAGTATGTTCCACCCTTGTTGAACGAGCAGGAGCTTATGTCCATTTCTACGTCACGAACTAATTCAAGGATCAAAGGACAATATTACAGTTTCCCTTCTGGCTTGGAAGGAAGTGGACATGGACTCTACCCCAATAATGTGCCTTCATTGCAGCTTCTTTGCAATGATCGTCGTTAATACGGAGAGCCATGGCACCATGTCCATAATATCAGAGCGAAACTCCTGCAAATCATAATTGATTTATTCTTTTCTTTGCTTATGCATGAGAGTTGGTGTTCATTCTGTTACTGAATATAAGGAACACAAAAAAGGGAGGATATAGTAAATCTCATGTCCCTTATTAGATGCTTATTCTGTTTCAGTTTCAATTAATTATAGAGTAACAACTTCAGAAATGGTTGTTGGTTTTTCCCTAGATGGAAAGAAACTTTATGTGTCTGAGAAGGTTATTGACTTGTAGTATACACAAGAAGAAGAATGGCAATGAAAAAAATTGCAGCTGCTTTAAATTTCTTTCAGCAATTTTCAGGAAAATAAAGTGT</genome_strand>
        <mrna_strand>CAGTACAAGTTTGGTGGAGTCTCTACCTCACAAATGCGAGACTGGCAAAATGCAGGGCGACCAATGCCTATCTTTGGACCTTCTCAAGCTCAATTGGCAGCTTCTTCTTCCTCGATGGAAGCACTTTCTTCCAAGTATGTTCCACCCTTGTTGAACGAGCAGGAGCTTATGTCCATTTTTACGTCACGAACTAATTCAAGGATCAAAGGACAATATTACAGTTTCCCTTCTGGCTTGGAAGGAAGTGGACATGGACTCTACCCCAATAATGTGCCTTCATTGCAGCTTCTTTGCAATGATCGTCGTTAATACGGAGAGCCATGGCACCATGTCCATAATATCAGAGCGAAACTCCTGCAAATCATAATTGATTTATTCTTTTCTTTGCTTATGCATGAGAGTTGGTGTTCATTCTGTTACTGAATATAAGGAACACAAAAAAGGGAGGATATAGTAAATTTCATGTCCCTTATTAGATGCTTATTCTGTTTCAGTTTCAATTAATTATAGAGTAACAACTTCAGAAATGGTTGTTGGTTTTTCCCTAGATGGAAAGAAACTTTATGTGTCTGAGAAGGTTATTGACTTGTAGTATACACAAGAAGAAGAATGGCAATGAAAAAAATTGCAGCTGCTTTAAATTTCTTTCAGCAATTTTCAGGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227747" ref_strand="+" ref_description="SGN-E227747 [cLEL-39-C5](-)">
      <seq>tttcaattgattatagagtaacaacttcagaaatggttgttggtttttccctagatggaaagaaactttatgtgtctgagaaggttattgacttgtagtatacacaagaagaagaatggcaatgaaaaaaattgcagctgctttaaatttctttcagcaattttcaggaaaataaagtgttcttttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="92571" stop="93361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92871" g_stop="93060" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="191" polyA_stop="206"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E227747" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>190</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92871" e_stop="93060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATTAATTATAGAGTAACAACTTCAGAAATGGTTGTTGGTTTTTCCCTAGATGGAAAGAAACTTTATGTGTCTGAGAAGGTTATTGACTTGTAGTATACACAAGAAGAAGAATGGCAATGAAAAAAATTGCAGCTGCTTTAAATTTCTTTCAGCAATTTTCAGGAAAATAAAGTGTTCTTTTATAC</genome_strand>
        <mrna_strand>TTTCAATTGATTATAGAGTAACAACTTCAGAAATGGTTGTTGGTTTTTCCCTAGATGGAAAGAAACTTTATGTGTCTGAGAAGGTTATTGACTTGTAGTATACACAAGAAGAAGAATGGCAATGAAAAAAATTGCAGCTGCTTTAAATTTCTTTCAGCAATTTTCAGGAAAATAAAGTGTTCTTTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374620" ref_strand="+" ref_description="SGN-E374620 [TUS-15-D11]">
      <seq>tgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcataggttggttgtgaatagagatcccaaattcaccaactttgttgagttccgtactcacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaacgagttggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcatcgagagaatgggagagttggagaagcaggagtgaagaactccgatgctttgctcaagagtcaaaacaaacacttgccttttccttcatcacctgcacttctcttccggctggctgtatttactgcattagacattctgtatcccgttgataccttcatgttgatgtggcctcatttaatacaagatttgttcattcatacatttaaaggtagtttgcaagtttaaatatgaatgtctctatctattcccagtttaaatatgaatatctttatcttttgttaactccaaaaactatattgttgttggaagtaggaaaagggttatttcaatccgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataaaaaaaaaacctcgaggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="96710" stop="93167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96566" g_stop="96556" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96555" i_stop="96410" i_length="146">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96409" g_stop="96311" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="110" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96310" i_stop="96229" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96228" g_stop="96178" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="161" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96177" i_stop="94875" i_length="1303">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94874" g_stop="94701" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="335" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94700" i_stop="94399" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94398" g_stop="94339" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="395" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94338" i_stop="93811" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93810" g_stop="93468" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="738" r_length="343" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="740" polyA_stop="777"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E374620" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96566" e_stop="96556"/>
          <exon e_start="96409" e_stop="96311"/>
          <exon e_start="96228" e_stop="96178"/>
          <exon e_start="94874" e_stop="94701"/>
          <exon e_start="94398" e_stop="94339"/>
          <exon e_start="93810" e_stop="93468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAGAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATACGAA</genome_strand>
        <mrna_strand>TGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAAAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATCCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711258" ref_strand="+" ref_description="SGN-E711258 [FB01BH02]">
      <seq>cctgagggctttttgctggtttttacaaattaaagaatcaaagagattttttcaattgtttctacagctgttttgcctgcagatcttctgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcataggttggttgtgaatagagatcccaaattcaccaactttgttgagttccgtactcacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaacgagttggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcatcgagagaatgggagagttggagaagcaggagtgaagaactccgatgctttgctcaagagtcaaaacaaacacttgccttttccttcatcacctgcacttctcttccggctggctgtatttactgcattagacattctgtatcccgttgataccttcatgttgatgtggcctcatttaatacaagatttgttcattcatacatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="96954" stop="93296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96654" g_stop="96556" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96555" i_stop="96410" i_length="146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96409" g_stop="96311" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="198" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96310" i_stop="96229" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96228" g_stop="96178" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="249" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96177" i_stop="94875" i_length="1303">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94874" g_stop="94701" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="423" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94700" i_stop="94399" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94398" g_stop="94339" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="483" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94338" i_stop="93811" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93810" g_stop="93595" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="699" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93594" i_stop="93515" i_length="80">
            <donor d_prob="0.653" d_score="0.98"/>
            <acceptor a_prob="0.614" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93514" g_stop="93507" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="707" r_length="8" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E711258" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96654" e_stop="96556"/>
          <exon e_start="96409" e_stop="96311"/>
          <exon e_start="96228" e_stop="96178"/>
          <exon e_start="94874" e_stop="94701"/>
          <exon e_start="94398" e_stop="94339"/>
          <exon e_start="93810" e_stop="93595"/>
          <exon e_start="93514" e_stop="93507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAGAAACTATA</genome_strand>
        <mrna_strand>CCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAA................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405367" ref_strand="+" ref_description="SGN-E405367 [PPC-18-E11]">
      <seq>gtttttacaaattaaagaatcaaagagatttctccaacttttttcaattgtttctccagctattttgcctgcagatcttctgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcatcggttggtggtgaatagagatcccaaattcaccaactttgttgagttccgtacccacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaatgaattggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcattgagagaatgggagagttggagaagcaggagtgaagatttctgtgctttgctcaagagtcgaaacaaacactttccttttccttcatcatctgcacttctcttccggctggttgtatttactgcattagacattctgtatcctgttgataccttcatgttgatgcngcctcatttaatacaagatttgttcattcatacatttaaaggtagtttgcaagtttaaatatgaatgtctcttatcttttcccagtttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="96908" stop="93240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96609" g_stop="96556" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="91" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96555" i_stop="96410" i_length="146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96409" g_stop="96311" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="190" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96310" i_stop="96229" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96228" g_stop="96178" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="241" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96177" i_stop="94875" i_length="1303">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.658" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94874" g_stop="94701" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="415" r_length="174" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94700" i_stop="94399" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94398" g_stop="94339" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="475" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94338" i_stop="93811" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93810" g_stop="93541" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="745" r_length="270" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E405367" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96609" e_stop="96556"/>
          <exon e_start="96409" e_stop="96311"/>
          <exon e_start="96228" e_stop="96178"/>
          <exon e_start="94874" e_stop="94701"/>
          <exon e_start="94398" e_stop="94339"/>
          <exon e_start="93810" e_stop="93541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTC-TATCTATTCCCAGTTTAAATATGA</genome_strand>
        <mrna_strand>CTTTTTTCAATTGTTTCTCCAGCTATTTTGCCTGCAGATCTTCTGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATCGGTTGGTGGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACCCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAATGAATTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATTGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGATTTCTG-TGCTTTGCTCAAGAGTCGAAACAAACACTTTCCTTTTCCTTCATCATCTGCACTTCTCTTCCGGCTGGTTGTATTTACTGCATTAGACATTCTGTATCCTGTTGATACCTTCATGTTGATGCNGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTTATCTTTTCCCAGTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308564" ref_strand="+" ref_description="SGN-E308564 [cLEY-21-I3]">
      <seq>tttactgcattagacattctgtatcccgttgataccttcatgttgatgtggcctcatttaatacaagatttgttcattcatacatttaaaggtagtttgcaagtttaaatatgaatgtctctatctattcccagtttaaaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="93985" stop="93238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93685" g_stop="93541" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E308564" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>145</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93685" e_stop="93541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGA</genome_strand>
        <mrna_strand>TTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403149" ref_strand="+" ref_description="SGN-E403149 [PPC-9-D18]">
      <seq>cagatcttctgaacaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcatcggttggtggtgaatagagatcccaaattcaccaactttgttgagttccgtacccacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaatgaattggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcattgagagaatgggagagttggagaagcangagtgaagatttctgtgctttgctcaagagtcgaaacaaacactttccttttccttcatcatctgcacttctcttccggctggttgtatttactgcattanacattctgtatcctgttgataccttcatgttgatgcggcctcatttaatacaagatttgttcattcatacattttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="96875" stop="93296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96575" g_stop="96556" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96555" i_stop="96410" i_length="146">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96409" g_stop="96311" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="118" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96310" i_stop="96229" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96228" g_stop="96178" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="169" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96177" i_stop="94875" i_length="1303">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.658" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94874" g_stop="94701" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="343" r_length="174" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94700" i_stop="94399" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94398" g_stop="94339" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="403" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94338" i_stop="93811" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93810" g_stop="93595" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="618" r_length="215" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="619" polyA_stop="629"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E403149" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96575" e_stop="96556"/>
          <exon e_start="96409" e_stop="96311"/>
          <exon e_start="96228" e_stop="96178"/>
          <exon e_start="94874" e_stop="94701"/>
          <exon e_start="94398" e_stop="94339"/>
          <exon e_start="93810" e_stop="93595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCTTCTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAG</genome_strand>
        <mrna_strand>CAGATCTTCTGAACAAA-TG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATCGGTTGGTGGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACCCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAATGAATTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATTGAGAGAATGGGAGAGTTGGAGAAGCANGAGTGAAGATTTCTG-TGCTTTGCTCAAGAGTCGAAACAAACACTTTCCTTTTCCTTCATCATCTGCACTTCTCTTCCGGCTGGTTGTATTTACTGCATTANACATTCTGTATCCTGTTGATACCTTCATGTTGATGCGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308425" ref_strand="+" ref_description="SGN-E308425 [cLEY-25-F6]">
      <seq>ttctgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcataggttggttgtgaatagagatcccaaattcaccaactttgttgagttccgtactcacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaacgagttggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcatcgagagaatgggagagttagagaagcaggagtgaagaactccgatgctttgctcaagagtcaaaacaaacacttgccttttccttcatcacctgcacttctcttccggctggctgtatttactgcattagacattctgtatcccgttgataccttcatgttgatgtggcctcatttaatacaagatttgttcattcatacatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="96710" stop="93296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96569" g_stop="96556" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96555" i_stop="96410" i_length="146">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96409" g_stop="96311" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="113" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96310" i_stop="96229" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96228" g_stop="96178" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="164" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96177" i_stop="94875" i_length="1303">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94874" g_stop="94701" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="338" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94700" i_stop="94399" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94398" g_stop="94339" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="398" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94338" i_stop="93811" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93810" g_stop="93595" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="614" r_length="216" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E308425" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96569" e_stop="96556"/>
          <exon e_start="96409" e_stop="96311"/>
          <exon e_start="96228" e_stop="96178"/>
          <exon e_start="94874" e_stop="94701"/>
          <exon e_start="94398" e_stop="94339"/>
          <exon e_start="93810" e_stop="93595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAG</genome_strand>
        <mrna_strand>TTCTGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATCGAGAGAATGGGAGAGTTAGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295390" ref_strand="+" ref_description="SGN-E295390 [cLET-23-D11]">
      <seq>ctgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcataggttggttgtgaatagagatcccaaattcaccaactttgttgagttccgtactcacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaacgagttggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcatcgagagaatgggagagttggagaagcaggagtgaagaactccgatgctttgctcaagagtcaaaacaaacacttgccttttccttcatcacctgcacttctcttccggctggctgtatttactgcattagacattctgtatcccgttgataccttcatgttgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="96710" stop="93337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96567" g_stop="96556" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96555" i_stop="96410" i_length="146">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96409" g_stop="96311" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="111" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96310" i_stop="96229" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96228" g_stop="96178" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="162" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96177" i_stop="94875" i_length="1303">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94874" g_stop="94701" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="336" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94700" i_stop="94399" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94398" g_stop="94339" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="396" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94338" i_stop="93811" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93810" g_stop="93637" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="570" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E295390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96567" e_stop="96556"/>
          <exon e_start="96409" e_stop="96311"/>
          <exon e_start="96228" e_stop="96178"/>
          <exon e_start="94874" e_stop="94701"/>
          <exon e_start="94398" e_stop="94339"/>
          <exon e_start="93810" e_stop="93637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGT</genome_strand>
        <mrna_strand>CTGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462597" ref_strand="+" ref_description="SGN-E462597 [cPRO-12-M5]">
      <seq>gtttttacaaattaaagaatcaaagagatttctccaacttttttcaattgtttctccagctattttgcctgcagatcttctgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggtccatcggttggtggtgaatagagatcccaaattcaccaactttgttgagttccgtacccacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaatgaattggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcattgagagaatgggagagttggagaagcangagtgaagatttctgtgctttgctcaagagtcgaaaccaacactttccttttccttcatcatctgcacttctcttccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="96908" stop="93396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96609" g_stop="96556" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="91" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96555" i_stop="96410" i_length="146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96409" g_stop="96311" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="190" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96310" i_stop="96229" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96228" g_stop="96178" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="241" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96177" i_stop="94875" i_length="1303">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.658" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94874" g_stop="94701" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="415" r_length="174" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94700" i_stop="94399" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94398" g_stop="94339" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="475" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94338" i_stop="93811" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93810" g_stop="93696" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="589" r_length="114" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E462597" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96609" e_stop="96556"/>
          <exon e_start="96409" e_stop="96311"/>
          <exon e_start="96228" e_stop="96178"/>
          <exon e_start="94874" e_stop="94701"/>
          <exon e_start="94398" e_stop="94339"/>
          <exon e_start="93810" e_stop="93696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCG</genome_strand>
        <mrna_strand>CTTTTTTCAATTGTTTCTCCAGCTATTTTGCCTGCAGATCTTCTGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTCCATCGGTTGGTGGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACCCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAATGAATTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATTGAGAGAATGGGAGAGTTGGAGAAGCANGAGTGAAGATTTCTG-TGCTTTGCTCAAGAGTCGAAACCAACACTTTCCTTTTCCTTCATCATCTGCACTTCTCTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310662" ref_strand="+" ref_description="SGN-E310662 [cLEZ-19-H20]">
      <seq>tctctggcacctcagttgtgaccctgagggctttttgctggtttttacaaattaaagaatcaaagagattttttcaattgtttctacagctgttttgcctgcagatcttctgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcataggttggttgtgaatagagatcccaaattcaccaactttgttgagttccgtactcacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaacgagttggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcatcgagagaatgggagagttggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="96976" stop="93480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96676" g_stop="96556" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96555" i_stop="96410" i_length="146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96409" g_stop="96311" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="220" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96310" i_stop="96229" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96228" g_stop="96178" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="271" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96177" i_stop="94875" i_length="1303">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94874" g_stop="94701" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="445" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94700" i_stop="94399" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94398" g_stop="94339" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="505" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94338" i_stop="93811" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93810" g_stop="93780" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="536" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E310662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96676" e_stop="96556"/>
          <exon e_start="96409" e_stop="96311"/>
          <exon e_start="96228" e_stop="96178"/>
          <exon e_start="94874" e_stop="94701"/>
          <exon e_start="94398" e_stop="94339"/>
          <exon e_start="93810" e_stop="93780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGA</genome_strand>
        <mrna_strand>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATCGAGAGAATGGGAGAGTTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204176" ref_strand="+" ref_description="SGN-E204176 [cLEC-13-A6]">
      <seq>tgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcataggttggttgtgaatagagatcccaaattcaccaactttgttgagttccgtgctcacaaggtaatatacagaagatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="96710" stop="94541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96566" g_stop="96556" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96555" i_stop="96410" i_length="146">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96409" g_stop="96311" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="110" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96310" i_stop="96229" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96228" g_stop="96178" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="161" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96177" i_stop="94875" i_length="1303">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94874" g_stop="94841" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="195" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E204176" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96566" e_stop="96556"/>
          <exon e_start="96409" e_stop="96311"/>
          <exon e_start="96228" e_stop="96178"/>
          <exon e_start="94874" e_stop="94841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATG</genome_strand>
        <mrna_strand>TGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTGCTCACAAGGTAATATACAGAAGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689068" ref_strand="+" ref_description="SGN-E689068 [t3_tus_55_P11]">
      <seq>gtaatatcaagatggtttatcgtatttatctaccattgcatcataaatacttgttccgttggtatcaaaggaataactttgtgaaatgattgaaggatagggagtggtgggggattcaagatattgttcaaaatttaatttctgtgtagagtaacctatgttatggcttagtatgaaattcttattgagacatttctccgtacctacatgttgtttcctaattcagtatcttggctttagaaaatttagaggttggaagagagtgggagagtggagggagggaaggatcaagaaagaagagccatttcccttttgcttgtgcatgattagaggatttatttagaatcatatacagactactttttatgcatcattctagcttcaatattgngtgtaatattcctgngatctgatttcttaaagaatcaaaaaatgttaacctgcaaaaggaaacaaaagaagcattgtgttttaactttgttgggtaatcctttctcatgagatgcttcgtgaagtataacatactatttaaaagtcctcgatgacataaagtacaaagcaagatatcggacagaagctcttttttcctaagtaagtgatttatccttggagctgtaagggggaaggtaaagccaaggaagagagagaaaaccagtttgaggtttgaacttgtgtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="96125" stop="94850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95825" g_stop="95150" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E689068" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95825" e_stop="95150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTG-GTGTAATATTCCTG-GATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATA</genome_strand>
        <mrna_strand>GTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGNGTGTAATATTCCTGNGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCCAAGGAAGAGAGAGAAAACCAGTTTGAGGTTTGAACTTGTGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551238" ref_strand="+" ref_description="SGN-E551238 [TUS-55-P11]">
      <seq>gtaatatcaagatggtttatcgtatttatctaccattgcatcataaatacttgttccgttggtatcaaaggaataactttgtgaaatgattgaaggatagggagtggtgggggattcaagatattgttcaaaatttaatttctgtgtagagtaacctatgttatggcttagtatgaaattcttattgagacatttctccgtacctacatgttgtttcctaattcagtatcttggctttagaaaatttagaggttggaagagagtgggagagtggagggagggaaggatcaagaaagaagagccatttcccttttgcttgtgcatgattagaggatttatttagaatcatatacagactactttttatgcatcattctagcttcaatattgngtgtaatattcctgngatctgatttcttaaagaatcaaaaaatgttaacctgcaaaaggaaacaaaagaagcattgtgttttaactttgttgggtaatcctttctcatgagatgcttcgtgaagtataacatactatttaaaagtcctcgatgacataaagtacaaagcaagatatcggacagaagctcttttttcctaagtaagtgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="96125" stop="94926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95825" g_stop="95226" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E551238" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95825" e_stop="95226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTG-GTGTAATATTCCTG-GATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTT</genome_strand>
        <mrna_strand>GTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGNGTGTAATATTCCTGNGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265123" ref_strand="+" ref_description="SGN-E265123 [cLEI-2-E19]">
      <seq>taatatcaagatggtttatcgtatttatctaccattgcatcataaatacttgttccgttggtatcaggaggaataactttgtgaaatgattgaaggatagggagtggtgggggattcaagatattgttcaaaatttaatttctgtgtagagtaacctatgttatggcttactatgaaattcttattgagacatttctccgtacctacatgttgtttcctaattcagtatcttggctttagaaaatttagaggttggaagagagtgggagagtggagggagggaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="96124" stop="95239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95824" g_stop="95539" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E265123" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95824" e_stop="95539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCA-AAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGA</genome_strand>
        <mrna_strand>TAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAGGAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTACTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251645" ref_strand="+" ref_description="SGN-E251645 [cLEG-15-M10]">
      <seq>aaaatgtgattatctgtcttgttttcgatctatagaacaccatactaagcgaatttgctacaattgtgctaaggcaaagggttctctttcgctagcctttaattttctaaaagtagtaatgtgtaactatcttatactgtgagaggatgatgtcctcttggtggagaactattttgctttccctctacactacgcctgcacattatcatgacatttcacattattggtgaagtaatatcaagatggattatcgtatttatctaccattgcatcataaatacttgttccgttggtatcaaaggaataactttgtgaaatgattgaaggatagggagtggtgggggattcaagatattgttcaaaatttaatttctgtgtagagtaacctatgttatggcttagtatgaaattcttattgagacatttctccgtacctacatgtggtttcctaatacaggatcttggctttagaaaatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="96356" stop="95278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96056" g_stop="95577" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E251645" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96056" e_stop="95577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAG</genome_strand>
        <mrna_strand>AAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTGTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACACTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGATTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTGGTTTCCTAATACAGGATCTTGGCTTTAGAAAATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624472" ref_strand="+" ref_description="SGN-E624472 [GI|18026820]">
      <seq>gccgctcccctttttttctccgtcacacaattgaattgatctcactgttacccaaaatgtcggtcaccgttagctcgccggccgtccgatccttccatgtttcacgatcacctcataaaacgatctataggccacgtgtcattatgtctgccgtccgatctagtgatagcttaggagtagcaccaattttgactaagttgcagaaagactgtgctactcctctcccagttttgcgccacgtggcggatgcaatggccgatgatatgcgggccgggcttgccgtcgatggcggcagtgatctgaagatgatccttagttatgtcgacactctaccaactgggaatgagaaaggcttgttttatgcgttggaccttggtggtacaaatttccgagtgctaagggtgcagctaggtggtaaagaagagcgtgtagtcgccactgagtttgagcaagtctctatacccccagaattgatgtttgctacctccgaggagctgttcgatttcatagcttctgcgctaggaaaatttgcacaaaaggaaggtggtaattttgagttgcaacagggacggacaagggaaataggattcacgttttcttttccagtgaaacagacttcaataagaactggaatcctaatcaaatggacaaaaggttttgctgtctctggaactgcaggaaaagatgttgttgcttgtttaaatgaagccatggagaggcggggaatggatatgcaagtgtctgccctggtcaatgacactgtgggaacacttgccggagcaagatactgggatgatgatgccatggttgctgtcattcttgggactggaaccaatgcttgctatgtagaacgtgtggatgctattcctaagctgacaaaaaggatgtccaagtctccaataacgattgtgaatactgaatggggagctttctcaaatggccttcctttaactgagtttgatagagaaatggatgccgagagcattaaccctggtgagcagatttttgaaaagaccatctccggtatgtaccttggggaaattgtgagacgggtgctggtcaaaatgtccaaggttgggggcttatttggtggcagctatgttccggaaaagttagtcactccatttgtgctgaggacacctgatatatgtgccatgcagcaggatacatcaagagatcttgaagctgttgaatctgtcctctatgatgtagctggggtaaaatccgatctaagtgcaaggaaaacagtcgtggacatttgcgatactattgcaaaacgagggggtcgtctggctggtgcaggaattgttgggattctacagaaaatggaggaggattctaaaggcctcatctttggtaaaagagcagttgtagcaatggatggaggcttatacgagcactatcctcagtacagaggatacctccaagaagctgtcacagagttactaggctcggaaatttcgaaaaatgtagtgatagaacattcaaaagatggttctggaattggagctgcattattagctgctgcaaactcaaagtatgaacatgattattaaggagaatgctaaatttcatgtctttcaaaggtttgcttgaggaaaaattacatgagcatttgtaattttcttgtaatttagaatgttctaagaaggattgatcattggacttctcattctttaagtagaggctcttgtttgtgatgccatttttgtactcccattagtgatgtacgaagaagtgaggattcatatagccaaccccaatttgtttgggaccgaggcatagttgttgttgtattatgcagcagtgacttatttatgtgataaaagcagatgtatcagtaaatatagaacatcttgtttgtttataattatgaaataagcacatttctttggtgttttagcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="104074" stop="99591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103779" g_stop="103440" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103439" i_stop="102830" i_length="610">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102829" g_stop="102679" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="491" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102678" i_stop="102594" i_length="85">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102593" g_stop="102411" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="674" r_length="183" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102410" i_stop="101848" i_length="563">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101847" g_stop="101773" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="749" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101772" i_stop="101675" i_length="98">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101674" g_stop="101519" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="905" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101518" i_stop="101433" i_length="86">
            <donor d_prob="0.966" d_score="0.96"/>
            <acceptor a_prob="0.828" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101432" g_stop="101337" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="906" r_stop="1001" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101336" i_stop="101235" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="101234" g_stop="101101" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1002" r_stop="1135" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="101100" i_stop="101006" i_length="95">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="101005" g_stop="100924" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1136" r_stop="1217" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="100923" i_stop="100520" i_length="404">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="100519" g_stop="99869" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1218" r_stop="1887" r_length="670" r_score="0.865"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E624472" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>1868</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103779" e_stop="103440"/>
          <exon e_start="102829" e_stop="102679"/>
          <exon e_start="102593" e_stop="102411"/>
          <exon e_start="101847" e_stop="101773"/>
          <exon e_start="101674" e_stop="101519"/>
          <exon e_start="101432" e_stop="101337"/>
          <exon e_start="101234" e_stop="101101"/>
          <exon e_start="101005" e_stop="100924"/>
          <exon e_start="100519" e_stop="99869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAGGTTGTTTAGTTTTTCTTGTTGTAATGGGATTTGACCAATACTATCTTTTTTGTTGTTGTATTCATCTTTGCATCGGTTATTGTAGGAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACTGTTAGTATTTCTTGACTCTCTTATTTGTGTAAAGGAGTGGCAGATTTTAGACATCTTACTAATTTAGCCTATGACTGATTCTGGAACCATACATCGCTAAGAAGGCCAATCAATTCTGCGTTATTTTAGTTTCAGTAAAGATGGCCAATTTCCCTCGAACTACTAAAACTTCCAACGAACGTTACGGTTTTACCTTTTTCTGAAGAAAGCACCGGAATCATCTAGTTGGTAAAATCCTGTAATTCCATCCCCAATCGATTGTGCATGTGAGATTTTCTGTTTTCTGGACAACCGAGTGTTTCATATTCGTGAGTCCATTTTTTTCAAGATACAACAAATTTGTAAGAGTACTGGTTACACTATGATAACTGATTAGTAAGTTGTGTAATTAGAGGGATCATTTCATCGCTTTGTTCTTACAAGTCGAATCGGAAAATACTGGATTCCAAACTAGTAGAGAAGATCGAGTTCCTTAACATTGACTTTTAACTTTGTCTCTCTTATCATTATCATTTTCATTTTACCTGCCGATTATTTTTTGATTCCATCATAACATGGAACAGGCGGGAAAAGATGTTGTTGCTTGTCTGAATGAAGCCATGGAGAGGCGGGGAATGGATATGCAAGTGTCTGCCCTGGTAGGTTCTTGCTCAACTTCATGTGTATTGTAGAAATGTTGGAGAATAGTCTGGCGCTTCCTTAGTTCAATCATTTCATGATTTCATTGTCAAGTTAGGTCAATGACACTGTGGGAACACTTGCCGGAGCAAGATACTGGGATGATGATGCCATGGTTGCTGTCATTCTTGGGACTGGAACCAATGCTTGCTATGTAGAACGTGTGGATGCTATTCCTAAGCTGGCAAAAAGGATGTCTAAGTCTCCAATAACGGTAAGTAGAGCCCAAATCTCCTTCGTCAAGTTATTTCATGAACAGATTTTAGCAACCATTGAGTTTGATACATCATTATATTTTAGATTGTGAATACCGAATGGGGAGCTTTCTCAAATGGCCTTCCTTTAACTGAGTTTGATAGAGAAATGGATGCCGAGAGCATTAACCCTGGTGAGCAGGCAAGTATTATTGACTCAAAATGTGAAAATTTCTTTTCTTCGTATTATTGGTATCACACTGTTTCTTAATGGTCTTTTCTACCATCTTATTTCTTGATGAAGATTTTTGAAAAGACCATCTCTGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGGCCAAGGTTGGGGGCTTATTTGGTAGCAGCTATGTTCCGGAAAAGCTAGTCACTCCATTTGTGCTGAGGTAATTACATCTGTTATATCAGAAGTTTATGATGCAAATGTTCTCGGTTTGTATTAATTAGTTTTTACTCACTCTGTCTGATCTGCATCATATAGGACACCTGATATATGTGCCATGCAGCAGGATACATCAATAGATCTTGAAGCTGTTGAGTCTGTCCTCTATGATGTAGCTGGGGTATATTCCTTAACTCTCGTGTTTTAACTTGCACTGCAATACTCTTTCCAGTCACTTATCTTCTAGGCCAATTTTTTTTCCGATTGAATACTTGTTGTCCAATAATCGATTCATGAAGAACCTTACATTTGAAGATCTATATTCATTCCAAAGACAACATTCAAAAGGATAGTTTAGCATCTGTTTCCATAAACATAGAACATTTTCCAGAGTTATGTTTATAGATATGAAAACACACAATAACAACTACTATTACGCCTCAATCCCAAGCAAGTTTAGGTCAGCAAAAAAATTTAGTCTCTCTAGCACTAGAAGTTCTTTGCAAAAAATATTTTCGTAGAGTATGAAAGAAGTCTACGAACGTTTTGATGTTCACGATTTTTCTTTGGATTATTAAATTTCAGGTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTAGCTGGTGCAGGAATTGTTGGTATATTACAGAAAATGGAGGAAGATTCTAAAGGTCTCATCTTTGGTAAAAGAACAGTTGTAGCAATGGATGGAGGCTTATATGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGCTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGATCTGGTATTGGAGCTGCATTATTAGCTGCTGCAAATTCAAAGTATGAACATGATGATTAAGGGAAAAGCTAAATTTCATGT-GTTCAAAGGTTTGCTTGAGGAAAAA-TACATGAGC-------A---T-TTGTAATTTAGAATGTTCTAAAGAAGGATTGATGATTGG-------A---TTT-A-TAGAGGCTCTTGTTTGTGATGCCATTTTTTGTACTCCCATTAATGAAGTACGAAGAAGTGAGGATTTATATAGCCAACCCCAATTTATTTGGAATCGAGGCGTAGTTGTAATTGTATTATATGCAGCACTGACTTATTTATGTGATAAAAAGCACATGTATCAGTAAATATAGAACATCTTGTTTGTTTTGTAATTGTGAAATAAGCACAA</genome_strand>
        <mrna_strand>GCCGCTCCCCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCCAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTATAGGCCACGTGTCATTATGTCTGCCGTCCGATCTAGTGATAGCTTAGGAGTAGCACCAATTTTGACTAAGTTGCAGAAAGACTGTGCTACTCCTCTCCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGCGGGCCGGGCTTGCCGTCGATGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGAGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCCAGAATTGATGTTTGCTACCTCCGAG.....................................................................................GAGCTGTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCAGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAAAAGATGTTGTTGCTTGTTTAAATGAAGCCATGGAGAGGCGGGGAATGGATATGCAAGTGTCTGCCCTG..................................................................................................GTCAATGACACTGTGGGAACACTTGCCGGAGCAAGATACTGGGATGATGATGCCATGGTTGCTGTCATTCTTGGGACTGGAACCAATGCTTGCTATGTAGAACGTGTGGATGCTATTCCTAAGCTGACAAAAAGGATGTCCAAGTCTCCAATAACG......................................................................................ATTGTGAATACTGAATGGGGAGCTTTCTCAAATGGCCTTCCTTTAACTGAGTTTGATAGAGAAATGGATGCCGAGAGCATTAACCCTGGTGAGCAG......................................................................................................ATTTTTGAAAAGACCATCTCCGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGTCCAAGGTTGGGGGCTTATTTGGTGGCAGCTATGTTCCGGAAAAGTTAGTCACTCCATTTGTGCTGAG...............................................................................................GACACCTGATATATGTGCCATGCAGCAGGATACATCAAGAGATCTTGAAGCTGTTGAATCTGTCCTCTATGATGTAGCTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTGGCTGGTGCAGGAATTGTTGGGATTCTACAGAAAATGGAGGAGGATTCTAAAGGCCTCATCTTTGGTAAAAGAGCAGTTGTAGCAATGGATGGAGGCTTATACGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGTTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGTTCTGGAATTGGAGCTGCATTATTAGCTGCTGCAAACTCAAAGTATGAACATGATTATTAAGGAGAATGCTAAATTTCATGTCTTTCAAAGGTTTGCTTGAGGAAAAATTACATGAGCATTTGTAATTTTCTTGTAATTTAGAATGTTCT-AAGAAGGATTGATCATTGGACTTCTCATTCTTTAAGTAGAGGCTCTTGTTTGTGATGCCA-TTTTTGTACTCCCATTAGTGATGTACGAAGAAGTGAGGATTCATATAGCCAACCCCAATTTGTTTGGGACCGAGGCATAGTTGTTGTTGTA-T-TATGCAGCAGTGACTTATTTATGTGAT-AAAAGCAGATGTATCAGTAAATATAGAACATCTTGTTTG-TTTATAATTATGAAATAAGCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745064" ref_strand="+" ref_description="SGN-E745064 [GI|67003901]">
      <seq>ggcacgagagatctcactgttacctaaaatgtcggtcaccgttagctcgccggccgtccgatccttccatgtttcacgatcacctcataaaacgatctctaggccacgtgtcattatatctgccgtccgatctactgacagcttaggagtagcaccaattttgacgaagttgcagaaagattgtgctactcctcttccagttttgcgccacgtggcggatgcaatggccgatgatatgagggccgggcttgccgtcgacggcggcagtgatctgaagatgatccttagttatgtcgacactctaccaactgggaatgagaaaggcttgttttatgcgttggaccttggtggtacaaatttccgggtgctaagggtgcagctaggtggtaaagaagagcgtgtagtcgccactgagtttgagcaagtctctataccccaagaactgatgtttgctacctccgaggagcttttcgatttcatagcttctgcgctaggaaaatttgcacaaaaggaaggtggtaattttgagttgcaacagggacggacaagggaaataggattcacgttttcttttccggtgaaacagacttcaataagaactggaatcctaatcaaatggacaaaaggttttgctgtctctggaactgcgggaaaagatgttgttgcttgtctgaatgaagccatggagaggcggggaatggatatgcaagtgtctgccctggtcaatgacactgtgggaacacttgccggagcaagatactgggatgatgatgccatggttgctgtcattcttgggactggaaccaatgcttgctatgtagaacgtgtggatgctattcctaagctggcaaaaaggatgtctaagtctccaataacgattgtgaataccgaatggggagctttctcaaatggccttcctttaactgagtttgatagagaaatggatgccgagagcattaaccctggtgagcagatttttgaaaagaccatctctggtatgtaccttggggaaattgtgagacgggtgctggtcaaaatggccaaggttgggggcttatttggtagcagctatgttccggagaagctagtcactccatttgtgctgaggacacctgatatatgtgccatgcagcaggatacatcaatagatcttgaagctgttgagtctgtcctctatgatgtagctggggtaaaatccgatctaagtgcaaggaaaacagtcgtggacatttgcgatactattgcaaaacgagggggtcgtctagctggtgcaggaattgttggtatattacagaaaatggaggaagattctaaaggtctcatctttggtaaaagaacagttgtagcaatggatggaggcttatatgagcactatcctcagtacagaggatacctccaagaagctgtcacagagctactaggctcggaaatttcgaaaaatgtagtgatagaacattcaaaagatggatctggtattggagctgcattattagctgctgcaaattcaaagtatgaacatgatgattaagggaaaagctaaatttcatgtgttcaaaggtttgcttgaggaaaaatacatgagcatttgtaatttagaatgttctaaagaaggattgatgattggatttatagaggctcttgtttgtgatgccattttttgtactcccattaatgaagtacgaagaagtgaggatttatatagccaaccccaatttatttggaatcgaggcgtagttgtaattgtattatatgcagcactgacttatttatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="104042" stop="99635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103742" g_stop="103440" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="312" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103439" i_stop="102830" i_length="610">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102829" g_stop="102679" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="463" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102678" i_stop="102594" i_length="85">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102593" g_stop="102411" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="646" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102410" i_stop="101848" i_length="563">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101847" g_stop="101773" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="721" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101772" i_stop="101675" i_length="98">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101674" g_stop="101519" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="877" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101518" i_stop="101433" i_length="86">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101432" g_stop="101337" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="878" r_stop="973" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101336" i_stop="101235" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="101234" g_stop="101101" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="974" r_stop="1107" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="101100" i_stop="101006" i_length="95">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="101005" g_stop="100924" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1108" r_stop="1189" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="100923" i_stop="100520" i_length="404">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="100519" g_stop="99935" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1190" r_stop="1774" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E745064" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1765</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103742" e_stop="103440"/>
          <exon e_start="102829" e_stop="102679"/>
          <exon e_start="102593" e_stop="102411"/>
          <exon e_start="101847" e_stop="101773"/>
          <exon e_start="101674" e_stop="101519"/>
          <exon e_start="101432" e_stop="101337"/>
          <exon e_start="101234" e_stop="101101"/>
          <exon e_start="101005" e_stop="100924"/>
          <exon e_start="100519" e_stop="99935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAGGTTGTTTAGTTTTTCTTGTTGTAATGGGATTTGACCAATACTATCTTTTTTGTTGTTGTATTCATCTTTGCATCGGTTATTGTAGGAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACTGTTAGTATTTCTTGACTCTCTTATTTGTGTAAAGGAGTGGCAGATTTTAGACATCTTACTAATTTAGCCTATGACTGATTCTGGAACCATACATCGCTAAGAAGGCCAATCAATTCTGCGTTATTTTAGTTTCAGTAAAGATGGCCAATTTCCCTCGAACTACTAAAACTTCCAACGAACGTTACGGTTTTACCTTTTTCTGAAGAAAGCACCGGAATCATCTAGTTGGTAAAATCCTGTAATTCCATCCCCAATCGATTGTGCATGTGAGATTTTCTGTTTTCTGGACAACCGAGTGTTTCATATTCGTGAGTCCATTTTTTTCAAGATACAACAAATTTGTAAGAGTACTGGTTACACTATGATAACTGATTAGTAAGTTGTGTAATTAGAGGGATCATTTCATCGCTTTGTTCTTACAAGTCGAATCGGAAAATACTGGATTCCAAACTAGTAGAGAAGATCGAGTTCCTTAACATTGACTTTTAACTTTGTCTCTCTTATCATTATCATTTTCATTTTACCTGCCGATTATTTTTTGATTCCATCATAACATGGAACAGGCGGGAAAAGATGTTGTTGCTTGTCTGAATGAAGCCATGGAGAGGCGGGGAATGGATATGCAAGTGTCTGCCCTGGTAGGTTCTTGCTCAACTTCATGTGTATTGTAGAAATGTTGGAGAATAGTCTGGCGCTTCCTTAGTTCAATCATTTCATGATTTCATTGTCAAGTTAGGTCAATGACACTGTGGGAACACTTGCCGGAGCAAGATACTGGGATGATGATGCCATGGTTGCTGTCATTCTTGGGACTGGAACCAATGCTTGCTATGTAGAACGTGTGGATGCTATTCCTAAGCTGGCAAAAAGGATGTCTAAGTCTCCAATAACGGTAAGTAGAGCCCAAATCTCCTTCGTCAAGTTATTTCATGAACAGATTTTAGCAACCATTGAGTTTGATACATCATTATATTTTAGATTGTGAATACCGAATGGGGAGCTTTCTCAAATGGCCTTCCTTTAACTGAGTTTGATAGAGAAATGGATGCCGAGAGCATTAACCCTGGTGAGCAGGCAAGTATTATTGACTCAAAATGTGAAAATTTCTTTTCTTCGTATTATTGGTATCACACTGTTTCTTAATGGTCTTTTCTACCATCTTATTTCTTGATGAAGATTTTTGAAAAGACCATCTCTGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGGCCAAGGTTGGGGGCTTATTTGGTAGCAGCTATGTTCCGGAAAAGCTAGTCACTCCATTTGTGCTGAGGTAATTACATCTGTTATATCAGAAGTTTATGATGCAAATGTTCTCGGTTTGTATTAATTAGTTTTTACTCACTCTGTCTGATCTGCATCATATAGGACACCTGATATATGTGCCATGCAGCAGGATACATCAATAGATCTTGAAGCTGTTGAGTCTGTCCTCTATGATGTAGCTGGGGTATATTCCTTAACTCTCGTGTTTTAACTTGCACTGCAATACTCTTTCCAGTCACTTATCTTCTAGGCCAATTTTTTTTCCGATTGAATACTTGTTGTCCAATAATCGATTCATGAAGAACCTTACATTTGAAGATCTATATTCATTCCAAAGACAACATTCAAAAGGATAGTTTAGCATCTGTTTCCATAAACATAGAACATTTTCCAGAGTTATGTTTATAGATATGAAAACACACAATAACAACTACTATTACGCCTCAATCCCAAGCAAGTTTAGGTCAGCAAAAAAATTTAGTCTCTCTAGCACTAGAAGTTCTTTGCAAAAAATATTTTCGTAGAGTATGAAAGAAGTCTACGAACGTTTTGATGTTCACGATTTTTCTTTGGATTATTAAATTTCAGGTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTAGCTGGTGCAGGAATTGTTGGTATATTACAGAAAATGGAGGAAGATTCTAAAGGTCTCATCTTTGGTAAAAGAACAGTTGTAGCAATGGATGGAGGCTTATATGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGCTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGATCTGGTATTGGAGCTGCATTATTAGCTGCTGCAAATTCAAAGTATGAACATGATGATTAAGGGAAAAGCTAAATTTCATGTGTTCAAAGGTTTGCTTGAGGAAAAATACATGAGCATTTGTAATTTAGAATGTTCTAAAGAAGGATTGATGATTGGATTTATAGAGGCTCTTGTTTGTGATGCCATTTTTTGTACTCCCATTAATGAAGTACGAAGAAGTGAGGATTTATATAGCCAACCCCAATTTATTTGGAATCGAGGCGTAGTTGTAATTGTATTATATGCAGCACTGACTTATTTATGTGA</genome_strand>
        <mrna_strand>GATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAG.....................................................................................GAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGAAAAGATGTTGTTGCTTGTCTGAATGAAGCCATGGAGAGGCGGGGAATGGATATGCAAGTGTCTGCCCTG..................................................................................................GTCAATGACACTGTGGGAACACTTGCCGGAGCAAGATACTGGGATGATGATGCCATGGTTGCTGTCATTCTTGGGACTGGAACCAATGCTTGCTATGTAGAACGTGTGGATGCTATTCCTAAGCTGGCAAAAAGGATGTCTAAGTCTCCAATAACG......................................................................................ATTGTGAATACCGAATGGGGAGCTTTCTCAAATGGCCTTCCTTTAACTGAGTTTGATAGAGAAATGGATGCCGAGAGCATTAACCCTGGTGAGCAG......................................................................................................ATTTTTGAAAAGACCATCTCTGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGGCCAAGGTTGGGGGCTTATTTGGTAGCAGCTATGTTCCGGAGAAGCTAGTCACTCCATTTGTGCTGAG...............................................................................................GACACCTGATATATGTGCCATGCAGCAGGATACATCAATAGATCTTGAAGCTGTTGAGTCTGTCCTCTATGATGTAGCTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTAGCTGGTGCAGGAATTGTTGGTATATTACAGAAAATGGAGGAAGATTCTAAAGGTCTCATCTTTGGTAAAAGAACAGTTGTAGCAATGGATGGAGGCTTATATGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGCTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGATCTGGTATTGGAGCTGCATTATTAGCTGCTGCAAATTCAAAGTATGAACATGATGATTAAGGGAAAAGCTAAATTTCATGTGTTCAAAGGTTTGCTTGAGGAAAAATACATGAGCATTTGTAATTTAGAATGTTCTAAAGAAGGATTGATGATTGGATTTATAGAGGCTCTTGTTTGTGATGCCATTTTTTGTACTCCCATTAATGAAGTACGAAGAAGTGAGGATTTATATAGCCAACCCCAATTTATTTGGAATCGAGGCGTAGTTGTAATTGTATTATATGCAGCACTGACTTATTTATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429483" ref_strand="+" ref_description="SGN-E429483 [STM-52-K11]">
      <seq>ggatgccgagagcattaaccctggtgagcagatttttgaaaagaccatctccggtatgtaccttggggaaattgtgagacgggtgctggtcaaaatgtccaaggttgggggcttatttggtggcagctatgttccggaaaagttagtcactccatttgtgctgaggacacctgatatatgtgccatgcagcaggatacatcaagagatcttgaagctgttgaatctgtcctctatgatgtagctggggtaaaatccgatctaagtgcaaggaaaacagtcgtggacatttgcgatactattgcaaaacgagggggtcgtctggctggtgcaggaattgttgggattctacagaaaatggaggaggattctaaaggcctcatctttggtaaaagagcagttgtagcaatggatggaggcttatacgagcactatcctcagtacagaggatacctccaagaagctgtcacagagttactaggctcggaaatttcgaaaaatgtagtgatagaacattcaaaagatggttctggaattggagctgcattattagctgctgcaaactcaaagtatgaacatgattattaaggagaatgctaaatttcatgtcttcaaaggtttgcttgangaaaaattacatgagcatttgtaattttcttgtaatttagaaatgtctaagaaggattgatcattggacttctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="101667" stop="99815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101367" g_stop="101337" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101336" i_stop="101235" i_length="102">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.877" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101234" g_stop="101101" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="165" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101100" i_stop="101006" i_length="95">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101005" g_stop="100924" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="247" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100923" i_stop="100520" i_length="404">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100519" g_stop="100115" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="653" r_length="406" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E429483" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101367" e_stop="101337"/>
          <exon e_start="101234" e_stop="101101"/>
          <exon e_start="101005" e_stop="100924"/>
          <exon e_start="100519" e_stop="100115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGCCGAGAGCATTAACCCTGGTGAGCAGGCAAGTATTATTGACTCAAAATGTGAAAATTTCTTTTCTTCGTATTATTGGTATCACACTGTTTCTTAATGGTCTTTTCTACCATCTTATTTCTTGATGAAGATTTTTGAAAAGACCATCTCTGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGGCCAAGGTTGGGGGCTTATTTGGTAGCAGCTATGTTCCGGAAAAGCTAGTCACTCCATTTGTGCTGAGGTAATTACATCTGTTATATCAGAAGTTTATGATGCAAATGTTCTCGGTTTGTATTAATTAGTTTTTACTCACTCTGTCTGATCTGCATCATATAGGACACCTGATATATGTGCCATGCAGCAGGATACATCAATAGATCTTGAAGCTGTTGAGTCTGTCCTCTATGATGTAGCTGGGGTATATTCCTTAACTCTCGTGTTTTAACTTGCACTGCAATACTCTTTCCAGTCACTTATCTTCTAGGCCAATTTTTTTTCCGATTGAATACTTGTTGTCCAATAATCGATTCATGAAGAACCTTACATTTGAAGATCTATATTCATTCCAAAGACAACATTCAAAAGGATAGTTTAGCATCTGTTTCCATAAACATAGAACATTTTCCAGAGTTATGTTTATAGATATGAAAACACACAATAACAACTACTATTACGCCTCAATCCCAAGCAAGTTTAGGTCAGCAAAAAAATTTAGTCTCTCTAGCACTAGAAGTTCTTTGCAAAAAATATTTTCGTAGAGTATGAAAGAAGTCTACGAACGTTTTGATGTTCACGATTTTTCTTTGGATTATTAAATTTCAGGTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTAGCTGGTGCAGGAATTGTTGGTATATTACAGAAAATGGAGGAAGATTCTAAAGGTCTCATCTTTGGTAAAAGAACAGTTGTAGCAATGGATGGAGGCTTATATGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGCTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGATCTGGTATTGGAGCTGCATTATTAGCTGCTGCAAATTCAAAGTATGAACATGATGATTAAGGGAAAAGCTAAATTTCATGTGTTCAAAGGTTTGCTTGAGGAAAAA-TACATGAGCATTTGTAATTT</genome_strand>
        <mrna_strand>GGATGCCGAGAGCATTAACCCTGGTGAGCAG......................................................................................................ATTTTTGAAAAGACCATCTCCGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGTCCAAGGTTGGGGGCTTATTTGGTGGCAGCTATGTTCCGGAAAAGTTAGTCACTCCATTTGTGCTGAG...............................................................................................GACACCTGATATATGTGCCATGCAGCAGGATACATCAAGAGATCTTGAAGCTGTTGAATCTGTCCTCTATGATGTAGCTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTGGCTGGTGCAGGAATTGTTGGGATTCTACAGAAAATGGAGGAGGATTCTAAAGGCCTCATCTTTGGTAAAAGAGCAGTTGTAGCAATGGATGGAGGCTTATACGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGTTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGTTCTGGAATTGGAGCTGCATTATTAGCTGCTGCAAACTCAAAGTATGAACATGATTATTAAGGAGAATGCTAAATTTCATGTCTTCAAAGGTTTGCTTGANGAAAAATTACATGAGCATTTGTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457362" ref_strand="+" ref_description="SGN-E457362 [cPRO-2-B21]">
      <seq>ggatgccgagagcattaaccctggtgagcagatttttgaaaagaccatctccggtatgtaccttggggaaattgtgagacgggtgctggtcaaaatgtccaaggttgggggcttatttggtggcagctatgttccggaaaagttagtcactccatttgtgctgaggacacctgatatatgtgccatgcagcaggatacatcaagagatcttgaagctgttgaatctgtcctctatgatgtagctggggtaaaatccgatctaagtgcaaggaaaacagtcgtggacatttgcgatactattgcaaaacgagggggtcgtctggctggtgcaggaattgttgggattctacagaaaatggaggaggattctaaaggcctcatctttggtaaaagagcagttgtagcaatggatggaggcttatacgagcactatcctcagtacagaggatacctccaagaagctgtcacagagttactaggctcggaaatttcgaaaaatgtagtgatagaacattcaaaagatggttctggaattggagctgcattattagctgctgcaaactcaaagtatgaacatgattattaaggagaatgctaaatttcatgtcttcaaaggtttgcttgangaaaaattacatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="101667" stop="99827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101367" g_stop="101337" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101336" i_stop="101235" i_length="102">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.877" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101234" g_stop="101101" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="165" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101100" i_stop="101006" i_length="95">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101005" g_stop="100924" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="247" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100923" i_stop="100520" i_length="404">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100519" g_stop="100127" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="641" r_length="394" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E457362" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101367" e_stop="101337"/>
          <exon e_start="101234" e_stop="101101"/>
          <exon e_start="101005" e_stop="100924"/>
          <exon e_start="100519" e_stop="100127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGCCGAGAGCATTAACCCTGGTGAGCAGGCAAGTATTATTGACTCAAAATGTGAAAATTTCTTTTCTTCGTATTATTGGTATCACACTGTTTCTTAATGGTCTTTTCTACCATCTTATTTCTTGATGAAGATTTTTGAAAAGACCATCTCTGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGGCCAAGGTTGGGGGCTTATTTGGTAGCAGCTATGTTCCGGAAAAGCTAGTCACTCCATTTGTGCTGAGGTAATTACATCTGTTATATCAGAAGTTTATGATGCAAATGTTCTCGGTTTGTATTAATTAGTTTTTACTCACTCTGTCTGATCTGCATCATATAGGACACCTGATATATGTGCCATGCAGCAGGATACATCAATAGATCTTGAAGCTGTTGAGTCTGTCCTCTATGATGTAGCTGGGGTATATTCCTTAACTCTCGTGTTTTAACTTGCACTGCAATACTCTTTCCAGTCACTTATCTTCTAGGCCAATTTTTTTTCCGATTGAATACTTGTTGTCCAATAATCGATTCATGAAGAACCTTACATTTGAAGATCTATATTCATTCCAAAGACAACATTCAAAAGGATAGTTTAGCATCTGTTTCCATAAACATAGAACATTTTCCAGAGTTATGTTTATAGATATGAAAACACACAATAACAACTACTATTACGCCTCAATCCCAAGCAAGTTTAGGTCAGCAAAAAAATTTAGTCTCTCTAGCACTAGAAGTTCTTTGCAAAAAATATTTTCGTAGAGTATGAAAGAAGTCTACGAACGTTTTGATGTTCACGATTTTTCTTTGGATTATTAAATTTCAGGTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTAGCTGGTGCAGGAATTGTTGGTATATTACAGAAAATGGAGGAAGATTCTAAAGGTCTCATCTTTGGTAAAAGAACAGTTGTAGCAATGGATGGAGGCTTATATGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGCTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGATCTGGTATTGGAGCTGCATTATTAGCTGCTGCAAATTCAAAGTATGAACATGATGATTAAGGGAAAAGCTAAATTTCATGTGTTCAAAGGTTTGCTTGAGGAAAAA-TACATGAG</genome_strand>
        <mrna_strand>GGATGCCGAGAGCATTAACCCTGGTGAGCAG......................................................................................................ATTTTTGAAAAGACCATCTCCGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGTCCAAGGTTGGGGGCTTATTTGGTGGCAGCTATGTTCCGGAAAAGTTAGTCACTCCATTTGTGCTGAG...............................................................................................GACACCTGATATATGTGCCATGCAGCAGGATACATCAAGAGATCTTGAAGCTGTTGAATCTGTCCTCTATGATGTAGCTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTGGCTGGTGCAGGAATTGTTGGGATTCTACAGAAAATGGAGGAGGATTCTAAAGGCCTCATCTTTGGTAAAAGAGCAGTTGTAGCAATGGATGGAGGCTTATACGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGTTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGTTCTGGAATTGGAGCTGCATTATTAGCTGCTGCAAACTCAAAGTATGAACATGATTATTAAGGAGAATGCTAAATTTCATGTCTTCAAAGGTTTGCTTGANGAAAAATTACATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458324" ref_strand="+" ref_description="SGN-E458324 [cPRO-5-I12]">
      <seq>ggatgccgagagcattaaccctggtgagcagatttttgaaaagaccatctccggtatgtaccttggggaaattgtgagacgggtgctggtcaaaatgtccaaggttgggggcttatttggtggcagctatgttccggaaaagttagtcactccatttgtgctgaggacacctgatatatgtgccatgcagcaggatacatcaagagatcttgaagctgttgaatctgtcctctatgatgtagctggggtaaaatccgatctaagtgcaaggaaaacagtcgtggacatttgcgatactattgcaaaacgagggggtcgtctggctggtgcaggaattgttgggattctacagaaaatggaggaggattctaaaggcctcatctttggtaaaagagcagttgtagcaatggatggaggcttatacgagcactatcctcagtacagaggatacctccaagaagctgtcacagagttactaggctcggaaatttccgaaaatgtagtgatagaacattcaaaagatggttctggaattggagctgcattattagctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="101667" stop="99910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101367" g_stop="101337" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101336" i_stop="101235" i_length="102">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.877" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101234" g_stop="101101" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="165" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101100" i_stop="101006" i_length="95">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101005" g_stop="100924" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="247" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100923" i_stop="100520" i_length="404">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100519" g_stop="100210" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="557" r_length="310" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E458324" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101367" e_stop="101337"/>
          <exon e_start="101234" e_stop="101101"/>
          <exon e_start="101005" e_stop="100924"/>
          <exon e_start="100519" e_stop="100210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGCCGAGAGCATTAACCCTGGTGAGCAGGCAAGTATTATTGACTCAAAATGTGAAAATTTCTTTTCTTCGTATTATTGGTATCACACTGTTTCTTAATGGTCTTTTCTACCATCTTATTTCTTGATGAAGATTTTTGAAAAGACCATCTCTGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGGCCAAGGTTGGGGGCTTATTTGGTAGCAGCTATGTTCCGGAAAAGCTAGTCACTCCATTTGTGCTGAGGTAATTACATCTGTTATATCAGAAGTTTATGATGCAAATGTTCTCGGTTTGTATTAATTAGTTTTTACTCACTCTGTCTGATCTGCATCATATAGGACACCTGATATATGTGCCATGCAGCAGGATACATCAATAGATCTTGAAGCTGTTGAGTCTGTCCTCTATGATGTAGCTGGGGTATATTCCTTAACTCTCGTGTTTTAACTTGCACTGCAATACTCTTTCCAGTCACTTATCTTCTAGGCCAATTTTTTTTCCGATTGAATACTTGTTGTCCAATAATCGATTCATGAAGAACCTTACATTTGAAGATCTATATTCATTCCAAAGACAACATTCAAAAGGATAGTTTAGCATCTGTTTCCATAAACATAGAACATTTTCCAGAGTTATGTTTATAGATATGAAAACACACAATAACAACTACTATTACGCCTCAATCCCAAGCAAGTTTAGGTCAGCAAAAAAATTTAGTCTCTCTAGCACTAGAAGTTCTTTGCAAAAAATATTTTCGTAGAGTATGAAAGAAGTCTACGAACGTTTTGATGTTCACGATTTTTCTTTGGATTATTAAATTTCAGGTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTAGCTGGTGCAGGAATTGTTGGTATATTACAGAAAATGGAGGAAGATTCTAAAGGTCTCATCTTTGGTAAAAGAACAGTTGTAGCAATGGATGGAGGCTTATATGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGCTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGATCTGGTATTGGAGCTGCATTATTAGCTGCTG</genome_strand>
        <mrna_strand>GGATGCCGAGAGCATTAACCCTGGTGAGCAG......................................................................................................ATTTTTGAAAAGACCATCTCCGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGTCCAAGGTTGGGGGCTTATTTGGTGGCAGCTATGTTCCGGAAAAGTTAGTCACTCCATTTGTGCTGAG...............................................................................................GACACCTGATATATGTGCCATGCAGCAGGATACATCAAGAGATCTTGAAGCTGTTGAATCTGTCCTCTATGATGTAGCTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTGGCTGGTGCAGGAATTGTTGGGATTCTACAGAAAATGGAGGAGGATTCTAAAGGCCTCATCTTTGGTAAAAGAGCAGTTGTAGCAATGGATGGAGGCTTATACGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGTTACTAGGCTCGGAAATTTCCGAAAATGTAGTGATAGAACATTCAAAAGATGGTTCTGGAATTGGAGCTGCATTATTAGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591131" ref_strand="+" ref_description="SGN-E591131 [44836]">
      <seq>acacaattgaattgatctcactgttacccaaaatgtcggtcaccgtaagctcgccggccgtccgatccttccatgtttcacgatcacctcataaaacgatctctaggccacgtgtcattatgtctgccgtccgatctagtgatagcttaggagtagcaccaattttgactaagttgcagaaagattgtgctactcctctcccagttttgcgccacgtggcggatgcaatggccgatgatatgcgggccgggcttgccgtcgatggcggcagtgatctgaagatgatccttagttatgtcgacactctaccaactgggaatgagaaaggcttgttttatgcgttggaccttggtggtacaaatttccgagtgctaagggtgcagctaggtggtaaagaagagcgtgtagtcgccactgagtttgagcaagtctctatacccccagaattgatgtttgctacctccgaggagctgttcgacttcatagcttctgcgctaggaaaatttgcacaaaaggaaggtggtaattttgagttgcaacagggacggacaagggaaataggattcacgttttcttttccagtgaaacagacttcaataagaactggaatcctaatcaaatggacaaaaggttttgctgtctctggaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="104055" stop="102110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103755" g_stop="103440" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103439" i_stop="102830" i_length="610">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102829" g_stop="102679" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="467" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102678" i_stop="102594" i_length="85">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102593" g_stop="102410" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="651" r_length="184" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E591131" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103755" e_stop="103440"/>
          <exon e_start="102829" e_stop="102679"/>
          <exon e_start="102593" e_stop="102410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAGGTTGTTTAGTTTTTCTTGTTGTAATGGGATTTGACCAATACTATCTTTTTTGTTGTTGTATTCATCTTTGCATCGGTTATTGTAGGAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACTG</genome_strand>
        <mrna_strand>ACACAATTGAATTGATCTCACTGTTACCCAAAATGTCGGTCACCGTAAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATGTCTGCCGTCCGATCTAGTGATAGCTTAGGAGTAGCACCAATTTTGACTAAGTTGCAGAAAGATTGTGCTACTCCTCTCCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGCGGGCCGGGCTTGCCGTCGATGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGAGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCCAGAATTGATGTTTGCTACCTCCGAG.....................................................................................GAGCTGTTCGACTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCAGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570239" ref_strand="+" ref_description="SGN-E570239 [14792]">
      <seq>gttgtccccctttttttctccgtcacacaattgaattgatctcactgttacccaaaatgtcggtcaccgtcagctcgccggccgtccgatcgttccatgtttcacgatcacctcataaaacgatctataggccacgtgtcattatgtctgctgtccgatctactgatagcttaggagtagcaccaattttgactaagttgcagaaagactgtgctactcctctcccagttttgcgccacgtggcggatgcaatggccgatgatatgcgggccgggcttgccgtcgatggcggcagtgatctgaagatgatccttagttatgtcgacactctaccaactgggaatgagaaaggcttgttttatgcattggaccttggtggtacaaatttccgagtgctaagggtgcagctaggtggtaaagaagagcgtgtagtcgccactgagtttgagcaagtctctatacccccagaattgatgtttgctacctccgaggagctgttcgatttcatagcttctgcactaggaaaatttgcacaaaaggaaggtggtaattttgagttgcaacagggacggacaagggcaaataggattcacgttttcttttccagtgaaacagacttcacataagaaactggaatcctaatccacatggacaaaaggttttgctgtctctggaactgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="104078" stop="102110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103779" g_stop="103440" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103439" i_stop="102830" i_length="610">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102829" g_stop="102679" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="491" r_length="151" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102678" i_stop="102594" i_length="85">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102593" g_stop="102411" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="678" r_length="187" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E570239" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103779" e_stop="103440"/>
          <exon e_start="102829" e_stop="102679"/>
          <exon e_start="102593" e_stop="102411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAGGTTGTTTAGTTTTTCTTGTTGTAATGGGATTTGACCAATACTATCTTTTTTGTTGTTGTATTCATCTTTGCATCGGTTATTGTAGGAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGG-AAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGACTTCA-ATAAG-AACTGGAATCCTAAT-CAAATGGACAAAAGGTTTTGCTGTCTCTGGAACT</genome_strand>
        <mrna_strand>GTTGTCCCCCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCCAAAATGTCGGTCACCGTCAGCTCGCCGGCCGTCCGATCGTTCCATGTTTCACGATCACCTCATAAAACGATCTATAGGCCACGTGTCATTATGTCTGCTGTCCGATCTACTGATAGCTTAGGAGTAGCACCAATTTTGACTAAGTTGCAGAAAGACTGTGCTACTCCTCTCCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGCGGGCCGGGCTTGCCGTCGATGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGAAAGGCTTGTTTTATGCATTGGACCTTGGTGGTACAAATTTCCGAGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCCAGAATTGATGTTTGCTACCTCCGAG.....................................................................................GAGCTGTTCGATTTCATAGCTTCTGCACTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGCAAATAGGATTCACGTTTTCTTTTCCAGTGAAACAGACTTCACATAAGAAACTGGAATCCTAATCCACATGGACAAAAGGTTTTGCTGTCTCTGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560817" ref_strand="+" ref_description="SGN-E560817 [20530]">
      <seq>ccggccgtccgatccttccatgtttcacgatcacctcataaaaacgatctcttaggccacgtgtcattatgtctgccgtccgatctagtgatagcttaggagtagcaccaaattttgactaagttgcaaaagattgtgctactcctctcccagttttgcgccacgtggcggatgcaatggccgatgatatgcgggccgggcttgccgtcgatggcggcagtgatctgaagatgatccttagttatgtcgacactctaccaactgggaatgagaaaggcttgttttatgcgttggaccttggtggtacaaatttccgagtgctaagggtgcagctaggtggtaaagaagagcgtgtagtcgccactgagtttgagcaagtctctatacccccagaattgatgtttgctacctccgaggagctgttcgacttcatagcttctgcgctaggaaaatttgcacaaaaggaaggtggtaattttgagttgcaacagggacggacaagggaaataggattcacgtgttcttttccagtgaaacagactttcaataagaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="104002" stop="102156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103702" g_stop="103440" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103439" i_stop="102830" i_length="610">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102829" g_stop="102679" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="416" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102678" i_stop="102594" i_length="85">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102593" g_stop="102456" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="555" r_length="139" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E560817" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103702" e_stop="103440"/>
          <exon e_start="102829" e_stop="102679"/>
          <exon e_start="102593" e_stop="102456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCAT-AAAACGATCTC-TAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACC-AATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAGGTTGTTTAGTTTTTCTTGTTGTAATGGGATTTGACCAATACTATCTTTTTTGTTGTTGTATTCATCTTTGCATCGGTTATTGTAGGAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGAC-TTCAATAAGAACT</genome_strand>
        <mrna_strand>CCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAAACGATCTCTTAGGCCACGTGTCATTATGTCTGCCGTCCGATCTAGTGATAGCTTAGGAGTAGCACCAAATTTTGACTAAGTTGCA-AAAGATTGTGCTACTCCTCTCCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGCGGGCCGGGCTTGCCGTCGATGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGAGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCCAGAATTGATGTTTGCTACCTCCGAG.....................................................................................GAGCTGTTCGACTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTGTTCTTTTCCAGTGAAACAGACTTTCAATAAGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560273" ref_strand="+" ref_description="SGN-E560273 [19902]">
      <seq>cacaattgaattgatctcactgttacccaaaatgtcggtcaccgtaagctcgccggccgtccgatccttccatgtttcacgatcacctcataaaacgatctctaggccacgtgtcattatgtctgccgtccgatctagtgatagcttaggagtagcaccaattttgactaagttgcagaaagattgtgctactcctctcccagttttgcgccacgtggcggatgcaatggccgatgatatgcgggccgggcttgccgtcgatggcggcagtgatctgaagatgatccttagttatgtcgacactctaccaactgggaatgagaaaggcttgttttatgcgttggaccttggtggtacaaatttccgagtgctaagggtgcagctaggtggtaaagaagagcgtgtagtcgccactgagtttgagcaagtctctatacccccagaattgatgtttgctacctccgaggagctgttcgacttcatagcttctgcgctaggaaaatttgcacaaaaggaaggtggtaattttgagttgcaacagggacggacaagggaaataggattcacgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="104054" stop="102189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103754" g_stop="103440" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103439" i_stop="102830" i_length="610">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102829" g_stop="102679" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="466" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102678" i_stop="102594" i_length="85">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102593" g_stop="102489" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="571" r_length="105" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E560273" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103754" e_stop="103440"/>
          <exon e_start="102829" e_stop="102679"/>
          <exon e_start="102593" e_stop="102489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAGGTTGTTTAGTTTTTCTTGTTGTAATGGGATTTGACCAATACTATCTTTTTTGTTGTTGTATTCATCTTTGCATCGGTTATTGTAGGAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTT</genome_strand>
        <mrna_strand>CACAATTGAATTGATCTCACTGTTACCCAAAATGTCGGTCACCGTAAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATGTCTGCCGTCCGATCTAGTGATAGCTTAGGAGTAGCACCAATTTTGACTAAGTTGCAGAAAGATTGTGCTACTCCTCTCCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGCGGGCCGGGCTTGCCGTCGATGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGAGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCCAGAATTGATGTTTGCTACCTCCGAG.....................................................................................GAGCTGTTCGACTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257079" ref_strand="+" ref_description="SGN-E257079 [cLEG-44-L5]">
      <seq>cactctgtggtaacgtcaccatttattgtctctttttttttctccgtcacacaggggaattggggtcactgttacctaaaatgtcggtcaccgttagctcgccggccgtccgatccttccatgtttcacgatcacctcataaaacgatctctaggccacgtgtcattatatctgccggccgatctactgacagcttaggagtagcaccaattttgacgaagttgcagaaagattgtgctactcctcttccagttttgcgccacgtggcggatgcaatggccgatgatatgagggccgggcttgccgtcgacggcggcagtgatctgaagatgatccttagttatgtcgacactctaccaactgggaatgagaaaggcttgttttatgcgttggaccttggtggtacaaatttccgggtgctaagggtgcagctaggtggtaaagaagaacgtgtagtcgccactgagtttgagcaagtctctataccccaagaactgatgtttgctacctccgaggagcttttcgatttcatagcttctgcgctaggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="104092" stop="102258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103803" g_stop="103440" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103439" i_stop="102830" i_length="610">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102829" g_stop="102679" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="515" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102678" i_stop="102594" i_length="85">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102593" g_stop="102558" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="551" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E257079" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103803" e_stop="103440"/>
          <exon e_start="102829" e_stop="102679"/>
          <exon e_start="102593" e_stop="102558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTGTTTCAACGTCACCATTTATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAGGTTGTTTAGTTTTTCTTGTTGTAATGGGATTTGACCAATACTATCTTTTTTGTTGTTGTATTCATCTTTGCATCGGTTATTGTAGGAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAA</genome_strand>
        <mrna_strand>CACTCTGTGGTAACGTCACCATTTATTGTCTCTTTTTTTTTCTCCGTCACACAGGGGAATTGGGGTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGGCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAACGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAG.....................................................................................GAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730175" ref_strand="+" ref_description="SGN-E730175 [LA23BC01]">
      <seq>cataaaagctgtaatgctctctgctacggtttagtttcagcactatgaaagtaacgaacagttatatagttagccaaattcttatattctttcattaaatcctcatcaatattttattgaaattcaactgtttttcatcattattttatttgaaattcaactgttcaaacaaactttttttttttagtgttaaaagttgaaatcttgaaacactctgtttcaacgtcaccatttattgtctctctttttttctccgtcacacaattgaattgatctcactgttacccaaaatgtcggtcaccgttagctcgccggccgtccaatccttccatgtttcacaatcacctcataaaacgatctctaggccacgtgtcattatatctgccgtccgatctactgacagcttaggagtagcaccaattttgacgaagttgcaaaaaaattgtgctactcctcttccagttttgcgccacgtggcggatgcaatggccaataatatgcgggccgggcttgccgtcaacggcggcagtgatctgaaaatgatccttagttatgtcgacactctaccaactgggaatgaaaaaggcttgttttatgcgttggaccttggtggaacaaatttccgggtgctaagggtgcagctaggtggtaaaaaagagcgtgatacccccactgagtttgagcaagtctctataccccaaaaactgatgtttgctacctccaaggaactgttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="104319" stop="102378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104019" g_stop="103440" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103439" i_stop="102830" i_length="610">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102829" g_stop="102679" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="725" r_length="151" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102678" i_stop="102594" i_length="85">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102593" g_stop="102583" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="736" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E730175" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104019" e_stop="103440"/>
          <exon e_start="102829" e_stop="102679"/>
          <exon e_start="102593" e_stop="102583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAAGCTGTAATGCTCTCTGCTACGGTTTAGTTTCAGCACTATGAAAGTAACGAACAGTTTTATAGTTAGCCAAATTCTTATATTCTTTCATTAAATCCTCACATCATTATTTTATTGAAATTCAACTGTTTTTCATCATTATTTTATTTGAAATTCAACTGTTCAAACAAACTTTTTTTTTTTTTCAAGTGTTAAAAGTTGAGATCTTCAAACACTCTGTTTCAACGTCACCATTTATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAGGTTGTTTAGTTTTTCTTGTTGTAATGGGATTTGACCAATACTATCTTTTTTGTTGTTGTATTCATCTTTGCATCGGTTATTGTAGGAGCTTTTCGA</genome_strand>
        <mrna_strand>CATAAAAGCTGTAATGCTCTCTGCTACGGTTTAGTTTCAGCACTATGAAAGTAACGAACAGTTATATAGTTAGCCAAATTCTTATATTCTTTCATTAAATCCT--CATCAATATTTTATTGAAATTCAACTGTTTTTCATCATTATTTTATTTGAAATTCAACTGTTCAAACAAAC--TTTTTTTTTTT--AGTGTTAAAAGTTGAAATCTTGAAACACTCTGTTTCAACGTCACCATTTATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCCAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCAATCCTTCCATGTTTCACAATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAAAAAAATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCAATAATATGCGGGCCGGGCTTGCCGTCAACGGCGGCAGTGATCTGAAAATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAAAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGAACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAAAAGAGCGTGATACCCCCACTGAGTTTGAGCAAGTCTCTATACCCCAAAAACTGATGTTTGCTACCTCCAAG.....................................................................................GAACTGTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445598" ref_strand="+" ref_description="SGN-E445598 [cSTA-9-P3]">
      <seq>atttattgtccccctttttttctccgtcacacaattgaattgatctcactgttacccaaaatgtcggtcaccgttagctcgccggccgtccgatccttccatgtttcacgatcacctcataaaacgatctataggccacgtgtcattatgtctgccgtccgatctagtgatagcttaggagtagcaccaattttgactaagttgcagaaagactgtgctactcctctcccagttctgcgccacgtggcggatgcaatggccgatgatatgcgggccgggcttgccgtcgatggcggcagtgatctgaagatgatccttagttatgtcgacactctaccaactgggaatgagaaaggcttgttttatgcgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="104083" stop="102502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103783" g_stop="103440" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103439" i_stop="102830" i_length="610">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102829" g_stop="102802" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="372" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E445598" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103783" e_stop="103440"/>
          <exon e_start="102829" e_stop="102802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTG</genome_strand>
        <mrna_strand>ATTTATTGTCCCCCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCCAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTATAGGCCACGTGTCATTATGTCTGCCGTCCGATCTAGTGATAGCTTAGGAGTAGCACCAATTTTGACTAAGTTGCAGAAAGACTGTGCTACTCCTCTCCCAGTTCTGCGCCACGTGGCGGATGCAATGGCCGATGATATGCGGGCCGGGCTTGCCGTCGATGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGAAAGGCTTGTTTTATGCGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540782" ref_strand="+" ref_description="SGN-E540782 [TUS-61-D20](-)">
      <seq>gaaaaacccaagatgtgcagctgatgaaaatgagctgcttagattttactgcacgagctttacgtgcgtccttggtgcacgtggctcgtccagcttgtgtggctcggtacccggttgtggagtttgcactaccatacgtcacggtttccaaggaaacaaaactagtggagtccgcacaactgctagtagtgggcgggcccacgattgtcttggtagcggtatggcccgacgcagggccatgatcgtgtgtcgggtcattgctggtagagtcaagcagaatgtgggcgcttctcccacgaaagaggaggagaattgctctggctctggttctggttctggttctggcttgtctgctactggctctaccatatacaattcagtagctggacatgtagggatttactcaaatctcgaggaattatacgtatttaatccaagggctatacttccaatgctttgttgtgatatacgaagcattggaatcttaggcttaatgtttttttttttttaatttgtacatgagctgtttgtacggtttagtttgtttttttcttttttgttgtgtccttaaatttatgtaactaatttcaagttagttaaaaaaaagttgtaacacccgtgaggtaatgctgatccaactatgatttttgtaaatatttatttattttaaaaaaaaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="114659" stop="5210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114359" g_stop="113695" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113694" i_stop="113338" i_length="357">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113337" g_stop="113318" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="686" r_length="20" r_score="0.650"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E540782" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114359" e_stop="113695"/>
          <exon e_start="113337" e_stop="113318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCC-ATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATGTTTTTTTTTTTTTAATTTGTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACTATGATTTTTGTAAATATTTATTTATTTTATTTATTTGTCCTTTTTACATAGTGTTAGTTTGTTGAAGGTGAGTAAATACAGTGATGTTTGAAGTTTATCTACCCAACTGTACCATAATAAATATCTTAAAATATAGCCCCTCAATTAATGCTTTAAAAAAATGCCGTCCTTCAACATTTAACTTGTCATTTTCTATGTCAATATAGGTTATCCCACTAAATTCTTTCGCTCTTTCATGATTTAAGTTATAAATACTGATAATATAAAAATATTTATGTCTTTATATCAATTTTGTTATTATGAAGATTTATATATCTATAGTACATGATAATGTAGGGAACTTGATCTCTTTTAATTGAATATTTACCTTTGTTGTTCTAAAGCTGCAAGAAATAAAGGTAAA</genome_strand>
        <mrna_strand>GAAAAACCCAAGATGTGCAGCTGATGAAAATGAGCTGCTTAGATTTTACTGCACGAGCTTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCAATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATGTTTTTTTTTTTTTAATTTGTACATGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACTATGATTTTTGTAAATATTTATTTATT.....................................................................................................................................................................................................................................................................................................................................................................TTAAAAAAAAAAAAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546632" ref_strand="+" ref_description="SGN-E546632 [TUS-70-B14](-)">
      <seq>acccggctgtggagtttgcactaccatacgtcacggtttccaaggaaacaaaactagtggggtccacacaactgctagtagtgggcgggcccacgattgtcttggtagtggtatggcccgacgcagggccatgatcgtgtgtcgggtcattgccggtagagtcaagcagaatgtgggcgcttctcccacgattgaggaggagaattgctctggttctggttctggttctggcttgtctgctactggctctaccatatacgattcagtagctggacatgtagggatttactcgaatctcgaggaattatacgtatttaatccaagggctatacttccatgctttgttgtgatatacgaagcattggaatcttaggcttaatgtttttttttttaatttctacttgagctgtttgtacggtttagtttgtttttttcttttttgttgtgtccttaaatttatgtaactaatttcaagttagttaaaaanaagttgtaacacccgtgagataatgctgatccaactnatgatttttgtaaatatttatttattttatttatttgccctttttacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="114551" stop="113371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114251" g_stop="113671" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E546632" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114251" e_stop="113671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATGTTTTTTTTTTTTTAATTTGTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACT-ATGATTTTTGTAAATATTTATTTATTTTATTTATTTGTCCTTTTTACATA</genome_strand>
        <mrna_strand>ACCCGGCTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGGGTCCACACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGTGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCCGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGATTGAGGAGGAGAA----T-T-GCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACGATTCAGTAGCTGGACATGTAGGGATTTACTCGAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATG--TTTTTTTTTTTAATTTCTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAANAAGTTGTAACACCCGTGAGATAATGCTGATCCAACTNATGATTTTTGTAAATATTTATTTATTTTATTTATTTGCCCTTTTTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218112" ref_strand="+" ref_description="SGN-E218112 [cLEL-23-O7](-)">
      <seq>atgtgggcgcttctcccacgaaagaggaggagaattgctctggctctggttctgattctggttctggcttgtctgctactggctctaccatatacaattcagtagctggacatgtagggatttactcaaatctcgaggaattatacgtatttaatccaagggctatacttccatgctttgttgtgatatacgaagcattggaatcttaggcttaatgttttttttttttaatttgtacttgagctgtttgtacggtttagtttgtttttttcttttttgttgtgtccttaaatttatgtaactaatttcaagttagttaaaaaaaagttgtaacacccgtgaggtaatgctgatccacctatgatttttgtaaatacttacttattttatttatttgtcctttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="114381" stop="113371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114081" g_stop="113671" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="422"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E218112" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114081" e_stop="113671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATGTTTTTTTTTTTTTAATTTGTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACTATGATTTTTGTAAATATTTATTTATTTTATTTATTTGTCCTTTTTACATA</genome_strand>
        <mrna_strand>ATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGATTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATG-TTTTTTTTTTTTAATTTGTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCACCTATGATTTTTGTAAATACTTACTTATTTTATTTATTTGTCCTTTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218036" ref_strand="+" ref_description="SGN-E218036 [cLEL-23-O7](-)">
      <seq>attgctctggctctggttctgattctggttctggcttgtctgctactggctctaccatatacaattcagtagctggacatgtagggatttactcaaatctcgaggaattatacgtatttaatccaagggctatacttccatgctttgttgtgatatacgaagcattggaatcttaggcttaatgttttttttttttaatttgtacttgaactgtttgtacggtttagtttgtttttttcttttttgttgtgtccttaaatttatgtaactaatttcaagttagttaaaaaaaagttgtaacacccgtgaggtaatgctgatccaactatgatttttgtaaatatttatttattttatttatttgtcccctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="114348" stop="113371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114048" g_stop="113671" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="378" polyA_stop="389"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E218036" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114048" e_stop="113671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATGTTTTTTTTTTTTTAATTTGTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACTATGATTTTTGTAAATATTTATTTATTTTATTTATTTGTCCTTTTTACATA</genome_strand>
        <mrna_strand>ATTGCTCTGGCTCTGGTTCTGATTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATG-TTTTTTTTTTTTAATTTGTACTTGAACTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACTATGATTTTTGTAAATATTTATTTATTTTATTTATTTGTCCCCTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372295" ref_strand="+" ref_description="SGN-E372295 [TUS-30-B5]">
      <seq>gtgaagatacatgcagtggccacaggcaagaaaaacccaagatgtgcagctgatggaaatgagctgcttagattttactgcacgagccttacgtgcgtccttggtgcacgtggctcgtccagcttgtgtggctcggtacccggttgtggagtttgcactaccatacgtcacggtttccaaggaaacaaaactagtggagtccgcacaactgctagtagtgggcgggcccacgattgtcttggtagcggtatggcccgacgcagggccatgatcgtgtgtcgggtcattgctggtagagtcaagcagaatgtgggcgcttctcccacgaaagaggaggagaattgctctggctctggttctggttctggttctggcttgtctgctactggctctaccatatacaattcagtagctggacatgtagggatttactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="114688" stop="113655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114388" g_stop="113955" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E372295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114388" e_stop="113955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTC</genome_strand>
        <mrna_strand>GTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372294" ref_strand="+" ref_description="SGN-E372294 [TUS-30-B5](-)">
      <seq>ggtgaagatacatgcagtggccacaggcaagaaaaacccaagatgtgcagctgatggaaatgagctgcttagattttactgcacgagccttacgtgcgtccttggtgcacgtggctcgtccagcttgtgtggctcggtacccggttgtggagtttgcactaccatacgtcacggtttccaaggaaacaaaactagtggagtccgcacaactgctagtagtgggcgggcccacgattgtcttggtagcggtatggcccgacgcagggccatgatcgtgtgtcgggtcattgctggtagagtcaagcagaatgtgggcgcttctcccacgaaagaggaggagaattgctctggctctggttctggttctggttctggcttgtctgctactggctctaccatatacaattcagtagctggacatgtagggatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="114689" stop="113656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114389" g_stop="113956" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E372294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114389" e_stop="113956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACT</genome_strand>
        <mrna_strand>GGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282785" ref_strand="+" ref_description="SGN-E282785 [cLER-15-K15]">
      <seq>gtgaagatacatgcagtggccacaggcaagaaaaacccaagatgtgcagctgatggaaatgagctgcttagattttactgcacgagccttacgtgcgtccttggtgcacgtggctcgtccagcttgtgtggctcggtacccggttgtggagtttgcactaccatacgtcacggtttccaaggaaacaaaactagtggagtccgcacaactgctagtagtgggcgggcccacgattgtcttggtagcggtatggcccgacgcacggccatgatcgtgtgtcgggtcattgctggtagagtcaagcagaatgtgggcgcttctcccacgaaagaggaggagaattgctctggctctggttctggttctggttctggcttgtctgctactggctctaccatatacaattcagtagctggacatgtagggatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="114688" stop="113656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114388" g_stop="113956" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E282785" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114388" e_stop="113956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACT</genome_strand>
        <mrna_strand>GTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCACGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540785" ref_strand="+" ref_description="SGN-E540785 [TUS-61-D20]">
      <seq>ttcaagttcgagatctcttgctagatcaaacggtaatggtagctccacatacactacttcatcaagaggaatgcaatttcgtaagctatctggatgttatgagtgtcacatgatagtagatcctagcaggtaccctttaccaaggtcaacaatttgtgcatgtccagattgtggagaagtttttccaaaaattgagagcttagaacatcatcaagcagttaaacatgctgtgtcagagttgggtccggaagattcaagccgtaacatagtggaaataatcttcaaatcaagctggcttaaaaaggataatccgatctgtaagatcgaacggatattaaaagtccacaacaccaaacgcacgatccaacggttcgaggactgtagggacgcggtgaagatacatgcagtggccacaggcaagaaaaacccaagatgtgcagctgatggaaatgagctgcttagatgttactgcacgagccttacgtgcgtccttggtgcacgtggctcgtccagcttgtgtggctcggtacccggttgtggagtttgcactaccatacgtcacggtttccaaggaaacaaaactagtggagtccgcacaactgctagtagtgggcgggcccacgattgtcttggtagcggtatggcccgacgcaaggccatgatcgtgtgtcgggtcattgctggtagagtcaagcagaatgtgggcgcttctcccacgaaagatgaggaagattgctctggctctggttctggttctggttctggcttgtctgctactggctctacatatacattcagtagctggacatgtagggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="116433" stop="113659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116133" g_stop="116005" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116004" i_stop="115903" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115902" g_stop="115802" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="230" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115801" i_stop="114550" i_length="1252">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114549" g_stop="113959" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="819" r_length="589" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E540785" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116133" e_stop="116005"/>
          <exon e_start="115902" e_stop="115802"/>
          <exon e_start="114549" e_stop="113959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAGGTATAATTTTAATTTCATTTTTCTAATACATTTTATTTGTGATTAATAATCTTGATATATAGCATTAATGAGTGAAAATATTAATTTTAATTTTTTTTATAGGTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTGGTAAATATTTATATTCGAAAAATCTCAAATACTATCTTAAAAATAAGTATAAATAATTTTCTATAAAACTTGTATAATTAGTATCCTGAAAAGCATATGCTTTAAGTAGTTAAATAGATACAGTATCAAAATGACGTATATTATTCGTGTCTATAAGTTAAATCCTTATATATATTATATTTTCTTTCCTACTTATATTCATATTCCTTTTGTTTAGATTAGGGAGGAGTAGGGGTGGAGTTTATGTGGAAAATCTCTTTTTGGAAAAGTGATATAAAGCTAGTCCACACAAAATAATATATAATCGATAAGATATATAATATAATATATAAACATTATATATGTATAATAACAAGTAAATTTAGATATTTTCTATTGAGCAGTCAAATGTGTAACTTTTTATTTTTAAAATACTCAATTTGCTCGTATTTATCCTAGAAAAGATGATTCCAATCTTGTAAAAGGAGACAAGCTTTAGACAACATTTAAGCTTTGAATTGTTTTAGGCAAAGTTCAAAATTGTGTTAGTGGAGGCAAAACGGAATTGTTAATACAATTTTTATAAAATAATAATATAAAGTACGTTAATTAAATATATTTTTGTGATACATAGGTTGAGCCCCCAATAAATATTTTGCCTTTTTTTTTGGACCACTTAAATATTTAAAGGACCATCTAGAGTAATATTTGCCAACTACCTCTTCATAAAATTGAAAAGTACTATATACATGTAGGAAAATTTTAATTGACAGATAATTAATTTCTCTTTTTATTATCATATACCACACCGACAACATGCATGACACCCTAATTTACAATACTAAATTAATTAATTAAAATATTTTTAGTTTAATAATGTTGAAGATTATTTTATTTTGATTAATTAAGAATGCATACCTAAGAAAGAATCGAATCTTTAATACTGAGATATTACTTGTCTTTGAATTACATACATTTGGTAGCCCACTCTACTTAATAATTAATGTTTTCTTATCTTGTTTAGCTATTTGAGTTCTAATTATTTATCATAAAACTAATTCTGGAATAGCTTATTCCTAAATTATTTCATAATTAGTTAATAACATTAATGTGTTGGTTGGCCAGTAAGACTTGATATCTTACCAACCAGAAATGAGACCCCATTTATTTTCTTTTGTTTTTTTTTTCATATATTTTTTTTATCGAATATTAAAAAATATATATATATTATATGTTTGCGGGTTAATTTTAATTTAAGCCGATTGATTTTCAGTGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTT</genome_strand>
        <mrna_strand>TTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAG......................................................................................................GTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATGTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAAGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGATGAGGAAGATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTA-CATATAC-ATTCAGTAGCTGGACATGTAGGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266417" ref_strand="+" ref_description="SGN-E266417 [cLEI-3-H17]">
      <seq>caggtattttttaccaaggtcaacaatttgtgcgtgtccagattgtggagaagtttttccaaaaattgagagcttagaacatcatcaagcagttaaacatgctgtgtcagagttgggtccggaagattcaagccgtaacatagtggaaataatcttcaaatcaagctggcttaaaaaggataatccgatctgtaagatcgaacggatattaaaagtccacaacaccaaacgcacgatccaacggttcgaggactgtagggacgcggtgaagatacatgcagtggccacaggcaagaaaaacccaagatgtgcagctgatggaaatgagctgcttagattttactgcacgagccttacgtgcgcccttggtgcacgtggctcgtccagcttgtgtggctcggtacccggttgtggagtttgcactaccatacgtcacggtttccaaggaaacaaaactagtggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="116196" stop="113889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116007" g_stop="116005" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116004" i_stop="115903" i_length="102">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115902" g_stop="115802" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="104" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115801" i_stop="114550" i_length="1252">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114549" g_stop="114189" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="465" r_length="361" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E266417" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116007" e_stop="116005"/>
          <exon e_start="115902" e_stop="115802"/>
          <exon e_start="114549" e_stop="114189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTATAATTTTAATTTCATTTTTCTAATACATTTTATTTGTGATTAATAATCTTGATATATAGCATTAATGAGTGAAAATATTAATTTTAATTTTTTTTATAGGTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTGGTAAATATTTATATTCGAAAAATCTCAAATACTATCTTAAAAATAAGTATAAATAATTTTCTATAAAACTTGTATAATTAGTATCCTGAAAAGCATATGCTTTAAGTAGTTAAATAGATACAGTATCAAAATGACGTATATTATTCGTGTCTATAAGTTAAATCCTTATATATATTATATTTTCTTTCCTACTTATATTCATATTCCTTTTGTTTAGATTAGGGAGGAGTAGGGGTGGAGTTTATGTGGAAAATCTCTTTTTGGAAAAGTGATATAAAGCTAGTCCACACAAAATAATATATAATCGATAAGATATATAATATAATATATAAACATTATATATGTATAATAACAAGTAAATTTAGATATTTTCTATTGAGCAGTCAAATGTGTAACTTTTTATTTTTAAAATACTCAATTTGCTCGTATTTATCCTAGAAAAGATGATTCCAATCTTGTAAAAGGAGACAAGCTTTAGACAACATTTAAGCTTTGAATTGTTTTAGGCAAAGTTCAAAATTGTGTTAGTGGAGGCAAAACGGAATTGTTAATACAATTTTTATAAAATAATAATATAAAGTACGTTAATTAAATATATTTTTGTGATACATAGGTTGAGCCCCCAATAAATATTTTGCCTTTTTTTTTGGACCACTTAAATATTTAAAGGACCATCTAGAGTAATATTTGCCAACTACCTCTTCATAAAATTGAAAAGTACTATATACATGTAGGAAAATTTTAATTGACAGATAATTAATTTCTCTTTTTATTATCATATACCACACCGACAACATGCATGACACCCTAATTTACAATACTAAATTAATTAATTAAAATATTTTTAGTTTAATAATGTTGAAGATTATTTTATTTTGATTAATTAAGAATGCATACCTAAGAAAGAATCGAATCTTTAATACTGAGATATTACTTGTCTTTGAATTACATACATTTGGTAGCCCACTCTACTTAATAATTAATGTTTTCTTATCTTGTTTAGCTATTTGAGTTCTAATTATTTATCATAAAACTAATTCTGGAATAGCTTATTCCTAAATTATTTCATAATTAGTTAATAACATTAATGTGTTGGTTGGCCAGTAAGACTTGATATCTTACCAACCAGAAATGAGACCCCATTTATTTTCTTTTGTTTTTTTTTTCATATATTTTTTTTATCGAATATTAAAAAATATATATATATTATATGTTTGCGGGTTAATTTTAATTTAAGCCGATTGATTTTCAGTGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGT</genome_strand>
        <mrna_strand>CAG......................................................................................................GTATTTTTTACCAAGGTCAACAATTTGTGCGTGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGCCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292043" ref_strand="+" ref_description="SGN-E292043 [cLET-7-N12]">
      <seq>ttcgagatctcttgctagatcaaacggtaatggtagctccacatacactacttatcaagaggaatgcaatttcgaagctatctggatgttatgagtgacatgatataatctacaggtacccttaccaaggcaacaattggctgtcagattgggagaagtttcaaaaattgagagcttaaacatataagcagtaaacatgctggtcagagttgggtccggaagattcaagccgtaacatagtggaaataatcttcaaatcaagctggcttaaaaaggataatccgatctgtaagatcgaacggatattaaaagtccacaacaccaaacgcacgatccaacggttcgaggactgtaaggacgcggtgaagatacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="116427" stop="114075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116127" g_stop="116005" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116004" i_stop="115903" i_length="102">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.994" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115902" g_stop="115802" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="202" r_length="87" r_score="0.861"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115801" i_stop="114550" i_length="1252">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114549" g_stop="114375" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="376" r_length="174" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E292043" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.061" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116127" e_stop="116005"/>
          <exon e_start="115902" e_stop="115802"/>
          <exon e_start="114549" e_stop="114375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAGGTATAATTTTAATTTCATTTTTCTAATACATTTTATTTGTGATTAATAATCTTGATATATAGCATTAATGAGTGAAAATATTAATTTTAATTTTTTTTATAGGTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTGGTAAATATTTATATTCGAAAAATCTCAAATACTATCTTAAAAATAAGTATAAATAATTTTCTATAAAACTTGTATAATTAGTATCCTGAAAAGCATATGCTTTAAGTAGTTAAATAGATACAGTATCAAAATGACGTATATTATTCGTGTCTATAAGTTAAATCCTTATATATATTATATTTTCTTTCCTACTTATATTCATATTCCTTTTGTTTAGATTAGGGAGGAGTAGGGGTGGAGTTTATGTGGAAAATCTCTTTTTGGAAAAGTGATATAAAGCTAGTCCACACAAAATAATATATAATCGATAAGATATATAATATAATATATAAACATTATATATGTATAATAACAAGTAAATTTAGATATTTTCTATTGAGCAGTCAAATGTGTAACTTTTTATTTTTAAAATACTCAATTTGCTCGTATTTATCCTAGAAAAGATGATTCCAATCTTGTAAAAGGAGACAAGCTTTAGACAACATTTAAGCTTTGAATTGTTTTAGGCAAAGTTCAAAATTGTGTTAGTGGAGGCAAAACGGAATTGTTAATACAATTTTTATAAAATAATAATATAAAGTACGTTAATTAAATATATTTTTGTGATACATAGGTTGAGCCCCCAATAAATATTTTGCCTTTTTTTTTGGACCACTTAAATATTTAAAGGACCATCTAGAGTAATATTTGCCAACTACCTCTTCATAAAATTGAAAAGTACTATATACATGTAGGAAAATTTTAATTGACAGATAATTAATTTCTCTTTTTATTATCATATACCACACCGACAACATGCATGACACCCTAATTTACAATACTAAATTAATTAATTAAAATATTTTTAGTTTAATAATGTTGAAGATTATTTTATTTTGATTAATTAAGAATGCATACCTAAGAAAGAATCGAATCTTTAATACTGAGATATTACTTGTCTTTGAATTACATACATTTGGTAGCCCACTCTACTTAATAATTAATGTTTTCTTATCTTGTTTAGCTATTTGAGTTCTAATTATTTATCATAAAACTAATTCTGGAATAGCTTATTCCTAAATTATTTCATAATTAGTTAATAACATTAATGTGTTGGTTGGCCAGTAAGACTTGATATCTTACCAACCAGAAATGAGACCCCATTTATTTTCTTTTGTTTTTTTTTTCATATATTTTTTTTATCGAATATTAAAAAATATATATATATTATATGTTTGCGGGTTAATTTTAATTTAAGCCGATTGATTTTCAGTGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGC</genome_strand>
        <mrna_strand>TTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTT-ATCAAGAGGAATGCAATTTCG-AAGCTATCTGGATGTTATGAGTG--ACATGATA-TA-AT-CTA-CAG......................................................................................................GTACCC-TTACCAAGG-CAACAA-TTG-GC-TGT-CAGATTG-GGAGAAG--TTT-CAAAAATTGAGAGCTTA-AACAT-AT-AAGCAG-TAAACATGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-GTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAAGGACGCGGTGAAGATACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729692" ref_strand="+" ref_description="SGN-E729692 [LA21DC05]">
      <seq>aagagaacttcttcttcatcttcttcaacaacaattgctctgtttttttcccattttcttgctctgtttttaatggcactgttaacatttttaccagaaacatcagaaaaaaatcaaccttcaaagaggaggaaaaaacaacaaaaacagaataaggagaaacaaaagcagccatcttcatgggatcaattcaaaaacttattgacttgcaaacaaattgaaaactcaactgttcatgatcctgcttccaaaaaccctcctccttcttcttcttctgctgctgctcctgctccagcttattctaagttgagttcttgtagctccatatgcagtttcagggatgtggtacatggcaacacaagagtggtacatagagctgataattccccagaaagtagcagtttaggccaagaaactcgtcttctaagcaagaataaaacttcacatcatggcccttcatcttcgagttcgagatctcttgccagatcgaacggtagtggtagctccgcgtatactacttcatcaagaggaatgcaatttcgtaagctatctggatgttatgagtgtcacatgatagtagatcctagcaggtaccctttaccaaggtcaacaatttgtgcatgtccagattgtggagaagtttttccaaaaattgagagcttagaacatcatcaagcagttaaacatgctgtgtcagagttgggtccggaagattcaagccgtaacatagtggaaataatcttcaaatcaagctggcttaaaaaggataatccgatctgtaagatcgaacggatattaaaagtccacaacaccaaacgcacgatccaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="117340" stop="114111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117039" g_stop="116728" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="338" r_length="315" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116727" i_stop="116257" i_length="471">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116256" g_stop="116005" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="590" r_length="252" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116004" i_stop="115903" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115902" g_stop="115802" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="691" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115801" i_stop="114550" i_length="1252">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114549" g_stop="114411" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="830" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E729692" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117039" e_stop="116728"/>
          <exon e_start="116256" e_stop="116005"/>
          <exon e_start="115902" e_stop="115802"/>
          <exon e_start="114549" e_stop="114411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCT-C--CTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAGGTATTAATTACTTAATTAAATCATATTTCCGTAACGTGCGAGTCTGATTCTCTTTTTTTCATAAATCAAATATATAGATTTTTCTCCCCCACAAGTCTTTCGTACCATGTTGAACTGCGTAAACATCTCATAACAAAAAATCAAAGTCAAAATAGTCATTTTACGATCTTATAATTAAAATATACTCGTTTTTTAGGATTCATACATGCATTATTATATGCACTTCTTTTTTTTAACTATATGACTTTACTTATGTTTTCTTTTCGTTTCGATATTTATTATAAATAAAATTTATTTTTTAAAAATAAAAAAGCAAAATCTCTAAATTTATTAATAGTGTCTTAAAATTTTGATTATAAATTGTATTGACTAGGAAGTGATTAGTAGTGTATTTCATCCAAATTTAAATTATTAGAGAAATTATTGATATAATTTTAATTATTTAATTATATTATGTCTCGATATCATTAGGGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAGGTATAATTTTAATTTCATTTTTCTAATACATTTTATTTGTGATTAATAATCTTGATATATAGCATTAATGAGTGAAAATATTAATTTTAATTTTTTTTATAGGTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTGGTAAATATTTATATTCGAAAAATCTCAAATACTATCTTAAAAATAAGTATAAATAATTTTCTATAAAACTTGTATAATTAGTATCCTGAAAAGCATATGCTTTAAGTAGTTAAATAGATACAGTATCAAAATGACGTATATTATTCGTGTCTATAAGTTAAATCCTTATATATATTATATTTTCTTTCCTACTTATATTCATATTCCTTTTGTTTAGATTAGGGAGGAGTAGGGGTGGAGTTTATGTGGAAAATCTCTTTTTGGAAAAGTGATATAAAGCTAGTCCACACAAAATAATATATAATCGATAAGATATATAATATAATATATAAACATTATATATGTATAATAACAAGTAAATTTAGATATTTTCTATTGAGCAGTCAAATGTGTAACTTTTTATTTTTAAAATACTCAATTTGCTCGTATTTATCCTAGAAAAGATGATTCCAATCTTGTAAAAGGAGACAAGCTTTAGACAACATTTAAGCTTTGAATTGTTTTAGGCAAAGTTCAAAATTGTGTTAGTGGAGGCAAAACGGAATTGTTAATACAATTTTTATAAAATAATAATATAAAGTACGTTAATTAAATATATTTTTGTGATACATAGGTTGAGCCCCCAATAAATATTTTGCCTTTTTTTTTGGACCACTTAAATATTTAAAGGACCATCTAGAGTAATATTTGCCAACTACCTCTTCATAAAATTGAAAAGTACTATATACATGTAGGAAAATTTTAATTGACAGATAATTAATTTCTCTTTTTATTATCATATACCACACCGACAACATGCATGACACCCTAATTTACAATACTAAATTAATTAATTAAAATATTTTTAGTTTAATAATGTTGAAGATTATTTTATTTTGATTAATTAAGAATGCATACCTAAGAAAGAATCGAATCTTTAATACTGAGATATTACTTGTCTTTGAATTACATACATTTGGTAGCCCACTCTACTTAATAATTAATGTTTTCTTATCTTGTTTAGCTATTTGAGTTCTAATTATTTATCATAAAACTAATTCTGGAATAGCTTATTCCTAAATTATTTCATAATTAGTTAATAACATTAATGTGTTGGTTGGCCAGTAAGACTTGATATCTTACCAACCAGAAATGAGACCCCATTTATTTTCTTTTGTTTTTTTTTTCATATATTTTTTTTATCGAATATTAAAAAATATATATATATTATATGTTTGCGGGTTAATTTTAATTTAAGCCGATTGATTTTCAGTGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACG</genome_strand>
        <mrna_strand>TTCAACAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGCAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTTCTTCTTCTGCTGCTGCTCCTGCTCCAGCTTATTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGGCCCTTCATCTTCGAGTTCGAGATCTCTTGCCAGATCGAACGGTAGTGGTAGCTCCGCGTATACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAG......................................................................................................GTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549403" ref_strand="+" ref_description="SGN-E549403 [TUS-70-B14]">
      <seq>ttctcttatgaaaaagagaacttcttcaacaattgctctgtttttttcccattttcttgctctgtttttaatggcactgttaacatttttaccagaaacatcagaaaaaaatcaaccttcaaagaggaggaaaaaacaacaaaaacagaataaggagaaacaaaagcagccatcttcttgggatcaattcaaaaacttattgacttgcaaacaaattgaaaactcaactgttcatgatcctgcttccaaaaaccctcctccttcttcttcttctgctcctactgctggagcttattctaagttgagttcttgtagctccatatgcagtttcagggatgtggtacatggcaacacaagagtggtacatagagctgataattccccagaaagtagcagtttaggccaagaaactcgtcttctaagcaagaataaaactttacatcatggtccttcgtcttcaagttcgagatctcttgctagatcgaacggtagtggtagctccacgtatactacttcatcaagaggaatgcaatttcgtaagctatctggatgttatgagtgtcacatgatagtagatcctagcaggtaccctttaccaaggtcaacaatttgtgcatgtccagattgtggagaagtttttccaaaaattgagagcttagaacatcatcaagcagttaaacatgctgtgtcagagttgggtccggatgatttcagccgtaacatagtagaaataatcttcaaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="117360" stop="114190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117060" g_stop="116728" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116727" i_stop="116257" i_length="471">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116256" g_stop="116005" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="585" r_length="252" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116004" i_stop="115903" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115902" g_stop="115802" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="686" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115801" i_stop="114550" i_length="1252">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114549" g_stop="114490" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="746" r_length="60" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E549403" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117060" e_stop="116728"/>
          <exon e_start="116256" e_stop="116005"/>
          <exon e_start="115902" e_stop="115802"/>
          <exon e_start="114549" e_stop="114490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAGGTATTAATTACTTAATTAAATCATATTTCCGTAACGTGCGAGTCTGATTCTCTTTTTTTCATAAATCAAATATATAGATTTTTCTCCCCCACAAGTCTTTCGTACCATGTTGAACTGCGTAAACATCTCATAACAAAAAATCAAAGTCAAAATAGTCATTTTACGATCTTATAATTAAAATATACTCGTTTTTTAGGATTCATACATGCATTATTATATGCACTTCTTTTTTTTAACTATATGACTTTACTTATGTTTTCTTTTCGTTTCGATATTTATTATAAATAAAATTTATTTTTTAAAAATAAAAAAGCAAAATCTCTAAATTTATTAATAGTGTCTTAAAATTTTGATTATAAATTGTATTGACTAGGAAGTGATTAGTAGTGTATTTCATCCAAATTTAAATTATTAGAGAAATTATTGATATAATTTTAATTATTTAATTATATTATGTCTCGATATCATTAGGGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAGGTATAATTTTAATTTCATTTTTCTAATACATTTTATTTGTGATTAATAATCTTGATATATAGCATTAATGAGTGAAAATATTAATTTTAATTTTTTTTATAGGTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTGGTAAATATTTATATTCGAAAAATCTCAAATACTATCTTAAAAATAAGTATAAATAATTTTCTATAAAACTTGTATAATTAGTATCCTGAAAAGCATATGCTTTAAGTAGTTAAATAGATACAGTATCAAAATGACGTATATTATTCGTGTCTATAAGTTAAATCCTTATATATATTATATTTTCTTTCCTACTTATATTCATATTCCTTTTGTTTAGATTAGGGAGGAGTAGGGGTGGAGTTTATGTGGAAAATCTCTTTTTGGAAAAGTGATATAAAGCTAGTCCACACAAAATAATATATAATCGATAAGATATATAATATAATATATAAACATTATATATGTATAATAACAAGTAAATTTAGATATTTTCTATTGAGCAGTCAAATGTGTAACTTTTTATTTTTAAAATACTCAATTTGCTCGTATTTATCCTAGAAAAGATGATTCCAATCTTGTAAAAGGAGACAAGCTTTAGACAACATTTAAGCTTTGAATTGTTTTAGGCAAAGTTCAAAATTGTGTTAGTGGAGGCAAAACGGAATTGTTAATACAATTTTTATAAAATAATAATATAAAGTACGTTAATTAAATATATTTTTGTGATACATAGGTTGAGCCCCCAATAAATATTTTGCCTTTTTTTTTGGACCACTTAAATATTTAAAGGACCATCTAGAGTAATATTTGCCAACTACCTCTTCATAAAATTGAAAAGTACTATATACATGTAGGAAAATTTTAATTGACAGATAATTAATTTCTCTTTTTATTATCATATACCACACCGACAACATGCATGACACCCTAATTTACAATACTAAATTAATTAATTAAAATATTTTTAGTTTAATAATGTTGAAGATTATTTTATTTTGATTAATTAAGAATGCATACCTAAGAAAGAATCGAATCTTTAATACTGAGATATTACTTGTCTTTGAATTACATACATTTGGTAGCCCACTCTACTTAATAATTAATGTTTTCTTATCTTGTTTAGCTATTTGAGTTCTAATTATTTATCATAAAACTAATTCTGGAATAGCTTATTCCTAAATTATTTCATAATTAGTTAATAACATTAATGTGTTGGTTGGCCAGTAAGACTTGATATCTTACCAACCAGAAATGAGACCCCATTTATTTTCTTTTGTTTTTTTTTTCATATATTTTTTTTATCGAATATTAAAAAATATATATATATTATATGTTTGCGGGTTAATTTTAATTTAAGCCGATTGATTTTCAGTGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAA</genome_strand>
        <mrna_strand>TTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCTTGGGATCAATTCAAAAACTTATTGACTTGCAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTTCTTCTTCTGCTCCTACTGCTGGAGCTTATTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTTACATCATGGTCCTTCGTCTTCAAGTTCGAGATCTCTTGCTAGATCGAACGGTAGTGGTAGCTCCACGTATACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAG......................................................................................................GTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAGAGTTGGGTCCGGATGATTTCAGCCGTAACATAGTAGAAATAATCTTCAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201785" ref_strand="+" ref_description="SGN-E201785 [cLEC-11-H3]">
      <seq>aaaaaccctcctccttctgctgctgctgctgctcctgctggagcttactctaagttgagttcttgtagctccatatgcagtttcagggatgtggtacatggcaacacaagagtggtacatagagctgataattccccagaaagtagcagtttaggccaagaaactcgtcttctaagcaagaataaaacttcacatcatgatccttcatcttcaagttcgagatctcttgctagatcaaacggtaatggtagctccacatacactacttcatcaagaggaatgcaatttcgtaagctatctggatgttatgagtgtcacatgatagtagatcctagcaggtaccctttaccaaggtcaacaatttgtgcatgtccagattgtggagaagtttttccaaaaattgagagcttagaacatcatcaagcagttaaacatgctgtgtcagagttgggtccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="117113" stop="115498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116813" g_stop="116728" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116727" i_stop="116257" i_length="471">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116256" g_stop="116005" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="338" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116004" i_stop="115903" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115902" g_stop="115802" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="439" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E201785" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116813" e_stop="116728"/>
          <exon e_start="116256" e_stop="116005"/>
          <exon e_start="115902" e_stop="115802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAGGTATTAATTACTTAATTAAATCATATTTCCGTAACGTGCGAGTCTGATTCTCTTTTTTTCATAAATCAAATATATAGATTTTTCTCCCCCACAAGTCTTTCGTACCATGTTGAACTGCGTAAACATCTCATAACAAAAAATCAAAGTCAAAATAGTCATTTTACGATCTTATAATTAAAATATACTCGTTTTTTAGGATTCATACATGCATTATTATATGCACTTCTTTTTTTTAACTATATGACTTTACTTATGTTTTCTTTTCGTTTCGATATTTATTATAAATAAAATTTATTTTTTAAAAATAAAAAAGCAAAATCTCTAAATTTATTAATAGTGTCTTAAAATTTTGATTATAAATTGTATTGACTAGGAAGTGATTAGTAGTGTATTTCATCCAAATTTAAATTATTAGAGAAATTATTGATATAATTTTAATTATTTAATTATATTATGTCTCGATATCATTAGGGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAGGTATAATTTTAATTTCATTTTTCTAATACATTTTATTTGTGATTAATAATCTTGATATATAGCATTAATGAGTGAAAATATTAATTTTAATTTTTTTTATAGGTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTG</genome_strand>
        <mrna_strand>AAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAG......................................................................................................GTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332403" ref_strand="+" ref_description="SGN-E332403 [cTOD-17-C10]">
      <seq>aaacttctctctctctttttctcttatgaaaaagagaacttcttcaacaattgctctgtttttttcccattttcttgctctgtttttaatggcactgttaacatttttaccagaaacatcagaaaaaaatcaaccttcaaagaggaggaaaaaacaacaaaaacagaataaggagaaacaaaagcagccatcttcatgggatcaattcaaaaacttattgacttgtaaacaaattgaaaactcaactgttcatgatcctgcttccaaaaaccctcctccttctgctgctgctgctgctcctgctggagcttactctaagttgagttcttgtagctccatatgcagtttcagggatgtggtacatggcaacacaagagtggtacatagagctgataattccccagaaagtagcagtttaggccaagaaactcgtcttctaagcaagaataaaacttcacatcatgatccttcatcttcaagttcgagatctcttgctagatcaaacggtaatggtagctccacatacactacttcatcaagaggaatgcaatttcgtaagctatctggatgttatgagtgtcacatgatagtagatcctagcaggtaccctttaccaaggtcaacaatttgtgcatgtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="117378" stop="115567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117078" g_stop="116728" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116727" i_stop="116257" i_length="471">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116256" g_stop="116005" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="603" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116004" i_stop="115903" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115902" g_stop="115867" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="639" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E332403" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117078" e_stop="116728"/>
          <exon e_start="116256" e_stop="116005"/>
          <exon e_start="115902" e_stop="115867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCTCTCTCTCTTTTTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAGGTATTAATTACTTAATTAAATCATATTTCCGTAACGTGCGAGTCTGATTCTCTTTTTTTCATAAATCAAATATATAGATTTTTCTCCCCCACAAGTCTTTCGTACCATGTTGAACTGCGTAAACATCTCATAACAAAAAATCAAAGTCAAAATAGTCATTTTACGATCTTATAATTAAAATATACTCGTTTTTTAGGATTCATACATGCATTATTATATGCACTTCTTTTTTTTAACTATATGACTTTACTTATGTTTTCTTTTCGTTTCGATATTTATTATAAATAAAATTTATTTTTTAAAAATAAAAAAGCAAAATCTCTAAATTTATTAATAGTGTCTTAAAATTTTGATTATAAATTGTATTGACTAGGAAGTGATTAGTAGTGTATTTCATCCAAATTTAAATTATTAGAGAAATTATTGATATAATTTTAATTATTTAATTATATTATGTCTCGATATCATTAGGGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAGGTATAATTTTAATTTCATTTTTCTAATACATTTTATTTGTGATTAATAATCTTGATATATAGCATTAATGAGTGAAAATATTAATTTTAATTTTTTTTATAGGTACCCTTTACCAAGGTCAACAATTTGTGCATGTCC</genome_strand>
        <mrna_strand>AAACTTCTCTCTCTCTTTTTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAG......................................................................................................GTACCCTTTACCAAGGTCAACAATTTGTGCATGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332209" ref_strand="+" ref_description="SGN-E332209 [cTOD-17-C11]">
      <seq>aaacttctctctctctttttctcttatgaaaaagagaacttcttcaacaattgctctgtttttttcccattttcttgctctgtttttaatggcactgttaacatttttaccagaaacatcagaaaaaaatcaaccttcaaagaggaggaaaaaacaacaaaaacagaataaggagaaacaaaagcagccatcttcatgggatcaattcaaaaacttattgacttgtaaacaaattgaaaactcaactgttcatgatcctgcttccaaaaaccctcctccttctgctgctgctgctgctcctgctggagcttactctaagttgagttcttgtagctccatatgcagtttcagggatgtggtacatggcaacacaagagtggtacatagagctgataattccccagaaagtagcagtttaggccaagaaactcgtcttctaagcaagaataaaacttcacatcatgatccttcatcttcaagttcgagatctcttgctagatcaaacggtaatggtagctccacatacactacttcatcaagaggaatgcaatttcgtaagctatctggatgttatgagtgtcacatgatagtagatcctagcaggtaccctttacaangtcaacaatttgtgcatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="117378" stop="115568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117078" g_stop="116728" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116727" i_stop="116257" i_length="471">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116256" g_stop="116005" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="603" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116004" i_stop="115903" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115902" g_stop="115868" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="637" r_length="34" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E332209" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117078" e_stop="116728"/>
          <exon e_start="116256" e_stop="116005"/>
          <exon e_start="115902" e_stop="115868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCTCTCTCTCTTTTTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAGGTATTAATTACTTAATTAAATCATATTTCCGTAACGTGCGAGTCTGATTCTCTTTTTTTCATAAATCAAATATATAGATTTTTCTCCCCCACAAGTCTTTCGTACCATGTTGAACTGCGTAAACATCTCATAACAAAAAATCAAAGTCAAAATAGTCATTTTACGATCTTATAATTAAAATATACTCGTTTTTTAGGATTCATACATGCATTATTATATGCACTTCTTTTTTTTAACTATATGACTTTACTTATGTTTTCTTTTCGTTTCGATATTTATTATAAATAAAATTTATTTTTTAAAAATAAAAAAGCAAAATCTCTAAATTTATTAATAGTGTCTTAAAATTTTGATTATAAATTGTATTGACTAGGAAGTGATTAGTAGTGTATTTCATCCAAATTTAAATTATTAGAGAAATTATTGATATAATTTTAATTATTTAATTATATTATGTCTCGATATCATTAGGGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAGGTATAATTTTAATTTCATTTTTCTAATACATTTTATTTGTGATTAATAATCTTGATATATAGCATTAATGAGTGAAAATATTAATTTTAATTTTTTTTATAGGTACCCTTTACCAAGGTCAACAATTTGTGCATGTC</genome_strand>
        <mrna_strand>AAACTTCTCTCTCTCTTTTTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAG......................................................................................................GTACCCTTTA-CAANGTCAACAATTTGTGCATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358035" ref_strand="+" ref_description="SGN-E358035 [cLHT-32-B11]">
      <seq>tctcttatgaaaaagagaacttcttcaacaattgctctgtttttttcccattttcttgctctgtttttaatggcactgttaacatttttaccagaaacatcagaaaaaaatcaaccttcaaagaggaggaaaaaacaacaaaaacagaataaggagaaacaaaagcagccatcttcttgggatcaattcaaaaacttattgacttgcaaacaaattgaaaactcaactgttcatgatcctgcttccaaaaaccctcctccttcttcttcttctgctcctactgctggagcttattctaagttgagttcttgtagctccatatgcagtttcagggatgtggtacatggcaacacaagagtggtacatagagctgataattccccagaaagtagcagtttaggccaagaaactcgtcttctaagcaagaataaaactttacatcatggtccttcgtcttcaagttcgagatctcttgctagatcgaacggtagtggtagctccacgtatactacttcatcaagaggaatgcaatttcgtaagctatctggatgttatgagtgtcacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="117359" stop="115721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117059" g_stop="116728" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116727" i_stop="116257" i_length="471">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116256" g_stop="116021" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="568" r_length="236" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E358035" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117059" e_stop="116728"/>
          <exon e_start="116256" e_stop="116021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAGGTATTAATTACTTAATTAAATCATATTTCCGTAACGTGCGAGTCTGATTCTCTTTTTTTCATAAATCAAATATATAGATTTTTCTCCCCCACAAGTCTTTCGTACCATGTTGAACTGCGTAAACATCTCATAACAAAAAATCAAAGTCAAAATAGTCATTTTACGATCTTATAATTAAAATATACTCGTTTTTTAGGATTCATACATGCATTATTATATGCACTTCTTTTTTTTAACTATATGACTTTACTTATGTTTTCTTTTCGTTTCGATATTTATTATAAATAAAATTTATTTTTTAAAAATAAAAAAGCAAAATCTCTAAATTTATTAATAGTGTCTTAAAATTTTGATTATAAATTGTATTGACTAGGAAGTGATTAGTAGTGTATTTCATCCAAATTTAAATTATTAGAGAAATTATTGATATAATTTTAATTATTTAATTATATTATGTCTCGATATCATTAGGGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGA</genome_strand>
        <mrna_strand>TCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCTTGGGATCAATTCAAAAACTTATTGACTTGCAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTTCTTCTTCTGCTCCTACTGCTGGAGCTTATTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTTACATCATGGTCCTTCGTCTTCAAGTTCGAGATCTCTTGCTAGATCGAACGGTAGTGGTAGCTCCACGTATACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745186" ref_strand="+" ref_description="SGN-E745186 [GI|47105942]">
      <seq>gatcgtttagggttctagggtttaaactaacagagaactgaagcttatagtgtaacttccttctctactgcttcatctaatgcttaaagattgaatttttagcagcaaaaatgtctattgaagaagcagttgatgaggattcgaagcaaaatcataatagtagattaacttatgaaggttgcaatgtattgcttgacatcaatgatggcgaccgtttagttttttctcgtcttactgctgcctcgacattgaaaattgggaataagaagtgttctcttcagcctcttataggttgtccattcgggtctctgtttcaagtggagccgggaaaagaaggaacctttttgactcgttttgttgagaatgcagaaggtaacggccttgaagaaaaagacgtggatggatctaaagacaaccgtgcgcttgttgataataatactgctcagagtctcactagtgaagatattgacgagatgcgaaagcagggagcaaaaggggatgaaatagttgaagcactcattgcaaacagtgcaacttttgagaagaagacattattttcacaagataagtatagggttaagaaacagaagaaatatgcacctcgagtacttttgaggcgcccctttgcacgaagcatttgtgaggcctacttcaagaaacatcctgaaaaaaatcggattcatgcgagtggatgcactatctctactgctctccttggggaatgttactgcaaatgcagatgtacttgtagtggacatgctcagtggtattcttactggtgctattgcagaacgacttggaggtactggttatgtgtgcaatacttatcgtggatcatcaccatatcctgtcgatatcacaaggatgtttaatttaagcgatgaaatctgtaaaagaatcgtgcatgcatcactgaccgacctgaattcatttcaaactggagcttcagtgtctgagggtcaggaagaaaccttacctgtcactcattctggtggtctagacgaagttagtgtgccagctgaagatggtggcatggatgtaacacctgagagagtttcttctccaataatcaagcctgttaaatctataaaagcaggtcagaaagcaaccctcgaggccatcaagtcgtggaaagaaaacggtttttccagcctaataattgctgctccggaactggacccatggggcattattaaagaagtgcttcctcttttatcattttcagctccttttgctgtttatcaccagtatgctcagcccctagctacgtgtatgcacaacctgcagattgagaaaatggcgattggattacaaatttctgaaccttggctacgtgaatatcaggtactcccatcaagaacccatccacatatgcagatgagcgcgtttggtggttatatactaagtggcacgaaaatatcgagcagtgactcccttaccagctctaactaggataaatttttttggcatctcactctgcttggttgtacatgtcgcttgacgataccattttcgtctttcgagaatattccctgttagaatagatgtagggattatcttgtctcttttctggggcagaaacaaggttactcatgttgtacttttattcattgattgatgtatgcttgcttttgtatgagcaattcttctaaatcaaaagactaaagggtctttttcctcttactttataaagtatttgaagattaagtggtaaattgtagaattatattgttgtctttcttggatcaagcaattgaagtctgttttgttgaagaaatataaaatatgtaatacaacattaacaattattcttcaactccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="120233" stop="126862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120532" g_stop="120775" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120776" i_stop="120929" i_length="154">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120930" g_stop="121057" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="372" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121058" i_stop="122066" i_length="1009">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122067" g_stop="122175" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="481" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122176" i_stop="122613" i_length="438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122614" g_stop="122695" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="563" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122696" i_stop="122765" i_length="70">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122766" g_stop="122836" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="634" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122837" i_stop="123513" i_length="677">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123514" g_stop="123555" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="677" r_length="43" r_score="0.952"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123556" i_stop="123837" i_length="282">
            <donor d_prob="0.994" d_score="0.95"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123838" g_stop="123962" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="802" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123963" i_stop="124265" i_length="303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124266" g_stop="124359" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="803" r_stop="896" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="124360" i_stop="124513" i_length="154">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="124514" g_stop="124580" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="897" r_stop="963" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="124581" i_stop="124692" i_length="112">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="124693" g_stop="124880" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="964" r_stop="1151" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="124881" i_stop="124962" i_length="82">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="124963" g_stop="125068" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1152" r_stop="1257" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="125069" i_stop="125615" i_length="547">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="125616" g_stop="125702" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1258" r_stop="1344" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="125703" i_stop="126079" i_length="377">
            <donor d_prob="0.145" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="126080" g_stop="126559" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1345" r_stop="1824" r_length="480" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1825" polyA_stop="1837"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E745186" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1823</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120532" e_stop="120775"/>
          <exon e_start="120930" e_stop="121057"/>
          <exon e_start="122067" e_stop="122175"/>
          <exon e_start="122614" e_stop="122695"/>
          <exon e_start="122766" e_stop="122836"/>
          <exon e_start="123514" e_stop="123555"/>
          <exon e_start="123838" e_stop="123962"/>
          <exon e_start="124266" e_stop="124359"/>
          <exon e_start="124514" e_stop="124580"/>
          <exon e_start="124693" e_stop="124880"/>
          <exon e_start="124963" e_stop="125068"/>
          <exon e_start="125616" e_stop="125702"/>
          <exon e_start="126080" e_stop="126559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGTTTAGGGTTCTAGGGTTTAAACTAACAGAGAACTGAAGCTTATAGTGTAACTTCCTTCTCTACTGCTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTCGTAAGTAATTACATCCGATTTTTTTTTGCTTCTGTCTGCTGCATTTAGTTTTGTAATTGAGATATAGTTGATTGATTTTAGTGCATAAAGATGCAGTTTTTTGTTCTGGATTATGGATTTTTGAACTGATGGAGAAGTTGTGTTGTGCATGCAGGACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAGGTATTCTTCTGATTTAGCCTTTTCATCTTCTATGAGTACTGTTTTCTCTGTTCTTCAATTAGTTATTATTACTAAGTTTATTCAACTTGGGGCGGTAGTCATTTACTGGGAGTACTTAGTTTTTGAAGTAGTCAATTACTAAAAAAGGCAGCCAGATACACTAAGCTCTTCCTATGTGCCGATCACGATGTATCATACACATCCTTACCCTCATTTCTGAAAGTGTTCTTTTTCACATCTCAGAGCCCTTGAGTTCACGTGACAGTCTGACAATTTTATGTGTAATGTAATTATATAGCATTACAGATAATAGGGCTAATCAGCCTATTATGTTTAATGGTATATACTTATAATATCTATCTGAAAGATTCTAATGCAAGGTTTTCTCAGAAAAATGCATTGCTTTGTATGGATAATCATCATAGACTCTTTTAGACTTGGAGGGAGCAAGCATGATTAACATAACTCTTTAACTTTATAACAAGGAAGATTACATGGGGTACTTAGACTTCAGTTGATGATATTTTTGCCTGTGCAAATGGCTTTTAGGGGTTGCATTTGTGGACCTTCCTGCCACATTGCAAATACCTTGTTTTTGGATAGAGCCAAAGAATGAGCTCTCGTTTTCCATGACGCATTCAAACATTTTTAGTAAAACCAGAACTAGTCTTCTTTTTAGCTTGGTTTATCCACTACAGTGTATTTCTTGCTTAAGAACCAGTTGAAGCGGGACAGAAGACTAGGATGTAGAGGTAGTATATAATTCTTTGACCAAGCTAGTATGCAAAGATAGACCAAACTAAATATGCTTATGCATCTCATGTTCAAAGGGTATCCCGGTGCACAAAGCATCCCGAGTGTCACACTGGGTTTGGGGAAGGGCCGCACCTGCAGAGTGTGATGTAGACAATCTACCCTTATACATCTCGTGTTACTTTCTCTTATTGTTCTAGTCTCTTTTTAACAAATTGTGGAATTTATAGTAACTTTTGTGCATTTTCATTATCAGGTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAAGTGAGTTTGTCTGAGGTTCATGGTTTTATGTGGTATTGTTTATTTATTTTAGTGGGCAGTTTCAAGAATTGTGGGAAAACCTTGCATAAGAGTCTTTCGAAGGCAGTTTCAAGATACTATTTTAGTGGATATTGATAATGTGTACTTTCAGTTAATTAGACGACCTCTAGGTTTGAGAACTGCAAACTAGTCTGGGATGGTGGTATGCATCATCTGCCGCTGTTTCACTCTGTTTTGGCAAATTTCATTGATATATTAACAGAAAAATTGGAGGCTTCTGAATCCAGAATTTCTATAGATCTATATTATATTTCTTCTGATATGTTTGAACAAATTTTGTTTACAAAAGAGTTCTCTCAAGCAAAAGAAAAGGCTGCAAGATTCTTAGGTTTTCATTTAGCAGTTTTGAAGAGAAGTATTAATCTGACTATGTTGCAGGCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAAGTGAGCTTGGCATTTTTGGTGTTGATTAGTTTTTCTTTGAGAAAATATGCTGACCTCTCATTGTTTGCAGGATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAGGTACACTCCTGTCTTTAAATCTCCTTTAGTTATTCTGGAGATAGACGTACTACTTCCTGATTTTTCCTTCATTTATAACTTAATCTTTGGAGAAGGGGAAGGTAGAACGAGATTGGATAATGTTTTCACTGCATTTCTTTGATATAGCTTAGTAAATAAAACTCTAAGATTGGTAATGTAATCAAAATTAAACAAGTTACTTTCATATGCTGCAAAATGTTGCACGTTCGCCCCAGGTGGAAGAAGGCAGTATTTCTTATTTGAGCAATGATCCAGTAACTGTCTATTTGTTGTAACTAGATTATACCACTTCATTCATGTGGAACACTCAGTTTTTCTGTGGATGAGTATGTCCTCGTATTGCTTTTTGATTAGTAAAGCATTTTAGGGCTTGTGGATTGTGTTTCACTTTTTATGATTTTCTTTTTTTAATTCAGGTGATAAGTAAAACATATAATGGTAGTTTTTCATTAATTTCTTCTAAGCACTATTGTTCTTCAAATCATATAATTGATTGTTCTGCATTTAATTTCTGAACTTGAAATCCCCAAGCTATTAGTGGTGATGTCAGATGTAGATAGTCGTAATACTACATTTGGTTTCTAGTTGCAAATCCCATAGTCGTTATCTTCCTCAATCTTTTCTTTAATTTCTAACATACCTCTTGCATTTTTCAGCATTTGTGAGGCCTACTTCAAGAAACATCCTG-AAAAAATCGGGTAATAATATGGTCTTTTCTTGTGTTTGATCAAATATCTTCATCTGTTGTTTCTGGTTATGATTTGTCTTTTTGATGGGAGGGAAAGAAGGATAGACATTGATAACTTATTTTAGCATCAGAAAATCTTGAAATCTGATATATCCTCCTTGATGTTATTTTTCTTTGTGGTTCAGATGCTCACTGTAGTCTAATAACCCAAAGTTTCATATCTTATTCATTTTGCTTTGCATGATTCTGGGTTTACATGGGGGTTGATTTTATATCCTCTTGATTCCATCAGATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAGGTATGTATTTGTTCTTAACTGTAGTTACATTAAGGAAATCAAGGGATATTTGTGAATTGTGACCATTGCTTTATACACATAAAATTTGATCATGCAGCCTATACTAATGGGAAATTGTATCATGTCTGTGGATTATTGCTACTGATACTGATCGTATGTTTGTCATCATGATGTGAACGGCGCTGATGCTTATAGTTGTGAAACCATGTCGAACATGTTATAGACTTATAGTATTGTTAAAGAGTGTTAATTGCTATTTAAGTTAATGACTTTTTAATATTTTCATGACAATGATATTAGCAGGTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAGGTACACTTCCTTTTGCAATGAAATAGAAAAATTACCCAATTAGTGCACAGAGAAAAAAATTGTATATTTCAGTGGATAGCTTTTGTCTAAACTCTAAATATGTTTTACTGCATTCGTACTAACTATAAACTTTGCTGTTTGTGTATGTATCTAGAATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAGGTAAAACCATGTTGTAATGTCAAAAGTTGATCCTTTTTTGGTGTAAATTGTTTCTTCTGTAAATGCGTGCGTGGATGACTTTTAAACTTCTCTCTAAAACATGTTCCTGCAGGAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGAGGCCATCAAGTCGTGGAAAGAAAACGGTTTTTCCAGGTTTGAATTTAATCTGGGTTTTATTCTTTTCTTTGACACATAATGTTTCTCCTTCTATCTCATTTCCAATATAATATTTCAGCCTAATAATTGCTGCTCCGGAACTGGACCCATGGGGCATTATTAAAGAAGTGCTTCCTCTTTTATCATTTTCAGCTCCTTTTGCTGTTTATCACCAGTATGCTCAGGTATTGTTCTTAGCTTGCCAATCTTATTTAATGTTTCTTAGCCTGCCAGGCTGCTCATTCATTGTTCACACACACAGCCCTTTCTTATTCACTTATGCAATAGCCCAACTTCTGCATTCTTTATATGTCTAGAAAAATTTTCTAAGGATGAAGTTTAGATAAACATTTTTTAATAGTAAAACCTTATGTTATTGGATTTAGGCATCCTGTAGTGAGCATGTGGTAGCAAATCAATATCCTTTTTTCTGCTCTTTAATGTCCAAAGCTGAGTAAATAAGTCGAAGAACTAAAATAGATTTTCAGAAGGTCATTCTCATTTTCCATTTGAGAGATGCAAGCATTTGAGAGGAGATCCTGCAACAGGATCACGTCACTGCTTATATTTTGGCTAGATTTTTGTTAAAAGACTCTGCTTTCTCCCATAAACTGGTGTGGATGGGTAGGTGGGCGGGCTGTTGTGTCAATAATTGGAGCGCACTCTTTGTCACATCACCTTCCCTTTCTGTTGGAAAAATAAGACAAAACTAATCCTTTGTTTTCATTGCAGCCCCTAGCTACGTGTATGCACAACCTGCAGATTGAGAAAATGGCGATTGGATTACAAATTTCTGAACCTTGGCTACGTGAATATCAGGTTTGTTTTAACTAAACCGAAACGACCCCGAAAAGGGGATCTGACCACTTACATGATTACTTAACTTTATATTTATTTGCATTCTCCAGGGAGATTCTGTCAAGCAGATAATAGAAATTTAACTATAGCTCCACTTGAAGTAGTTTGACATGTGTACACTTTTTTTTTTTTTACTGACAACTTCTTTTTCTGTACTTGTGATCAGAATTTAGGATCTAAAGTCAATAGGTTTAAACTGAGTCTAATACACACACAAAAACTTGCATGTTTATTTGTGGATCGAACCAAAAACAATGTGTTCAGTTGAACCTGCCTCTAGATCTGCCTATGTTTGCTATAGCTTGTTAATTGTGCCTGAAATACTTGAAAACATGCAGGTACTCCCATCAAGAACCCATCCACATATGCAGATGAGCGCGTTTGGTGGTTATATACTAAGTGGCACGAAAATATCGAGCAGTGACTCCCTTACCAGCTCTAACTAGGATAAATTTTTTTGGCATCTCACTCTGCTTGGTTGTACATGTCGCTTGACGATACCATTTTCGTCTTTCGAGAATATTCCCTGTTAGAATAGATGTAGGGATTATCTTGTCTCTTTTCTGGGGCAGAAACAAGGTTACTCATGTTGTACTTTTATTCATTGATTGATGTATGCTTGCTTTTGTATGAGCAATTCTTCTAAATCAAAAGACTAAAGGGTCTTTTTCCTCTTACTTTATAAAGTATTTGAAGATTAAGTGGTAAATTGTAGAATTATATTGTTGTCTTTCTTGGATCAAGCAATTGAAGTCTGTTTTGTTGAAGAAATATAAAATATGTAATACAACATTAACAATTATTCTTCAACTCCAAAC</genome_strand>
        <mrna_strand>GATCGTTTAGGGTTCTAGGGTTTAAACTAACAGAGAACTGAAGCTTATAGTGTAACTTCCTTCTCTACTGCTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC..........................................................................................................................................................GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA......................................................................GATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAAATCGG..........................................................................................................................................................................................................................................................................................ATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAG...............................................................................................................................................................................................................................................................................................................GTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAG..........................................................................................................................................................AATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAG................................................................................................................GAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGAGGCCATCAAGTCGTGGAAAGAAAACGGTTTTTCCAG..................................................................................CCTAATAATTGCTGCTCCGGAACTGGACCCATGGGGCATTATTAAAGAAGTGCTTCCTCTTTTATCATTTTCAGCTCCTTTTGCTGTTTATCACCAGTATGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCTAGCTACGTGTATGCACAACCTGCAGATTGAGAAAATGGCGATTGGATTACAAATTTCTGAACCTTGGCTACGTGAATATCAG.........................................................................................................................................................................................................................................................................................................................................................................................GTACTCCCATCAAGAACCCATCCACATATGCAGATGAGCGCGTTTGGTGGTTATATACTAAGTGGCACGAAAATATCGAGCAGTGACTCCCTTACCAGCTCTAACTAGGATAAATTTTTTTGGCATCTCACTCTGCTTGGTTGTACATGTCGCTTGACGATACCATTTTCGTCTTTCGAGAATATTCCCTGTTAGAATAGATGTAGGGATTATCTTGTCTCTTTTCTGGGGCAGAAACAAGGTTACTCATGTTGTACTTTTATTCATTGATTGATGTATGCTTGCTTTTGTATGAGCAATTCTTCTAAATCAAAAGACTAAAGGGTCTTTTTCCTCTTACTTTATAAAGTATTTGAAGATTAAGTGGTAAATTGTAGAATTATATTGTTGTCTTTCTTGGATCAAGCAATTGAAGTCTGTTTTGTTGAAGAAATATAAAATATGTAATACAACATTAACAATTATTCTTCAACTCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323733" ref_strand="+" ref_description="SGN-E323733 [cTOC-2-L16]">
      <seq>cttcatctaatgcttaaagattgaatttttagcagcaaaaatgtctattgaagaagcagttgatgaggattcgaagcaaaatcataatagtagattaacttatgaaggttgcaatgtattgcttgacatcaatgatggcgaccgtttagttttttctcgtcttactgctgcctcgacattgaaaattgggaataagaagtgttctcttcagcctcttataggttgtccattcgggtctctgtttcaagtggagccgggaaaagaaggaacctttttgactcgttttgttgagaatgcagaaggtaacggccttgaagaaaaagacgtggatggatctaaagacaaccgtgcgcttgttgataataatactgctcagagtctcactagtgaagatattgacgagatgcgaaagcagggagcaaaaggggatgaaatagttgaagcactcattgcaaacagtgcaacttttgagaagaagacattattttcacaagataagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="120302" stop="123000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120602" g_stop="120775" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120776" i_stop="120929" i_length="154">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120930" g_stop="121057" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="302" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121058" i_stop="122066" i_length="1009">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122067" g_stop="122175" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="411" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122176" i_stop="122613" i_length="438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122614" g_stop="122695" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="493" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122696" i_stop="122765" i_length="70">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122766" g_stop="122773" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="501" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E323733" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120602" e_stop="120775"/>
          <exon e_start="120930" e_stop="121057"/>
          <exon e_start="122067" e_stop="122175"/>
          <exon e_start="122614" e_stop="122695"/>
          <exon e_start="122766" e_stop="122773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTCGTAAGTAATTACATCCGATTTTTTTTTGCTTCTGTCTGCTGCATTTAGTTTTGTAATTGAGATATAGTTGATTGATTTTAGTGCATAAAGATGCAGTTTTTTGTTCTGGATTATGGATTTTTGAACTGATGGAGAAGTTGTGTTGTGCATGCAGGACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAGGTATTCTTCTGATTTAGCCTTTTCATCTTCTATGAGTACTGTTTTCTCTGTTCTTCAATTAGTTATTATTACTAAGTTTATTCAACTTGGGGCGGTAGTCATTTACTGGGAGTACTTAGTTTTTGAAGTAGTCAATTACTAAAAAAGGCAGCCAGATACACTAAGCTCTTCCTATGTGCCGATCACGATGTATCATACACATCCTTACCCTCATTTCTGAAAGTGTTCTTTTTCACATCTCAGAGCCCTTGAGTTCACGTGACAGTCTGACAATTTTATGTGTAATGTAATTATATAGCATTACAGATAATAGGGCTAATCAGCCTATTATGTTTAATGGTATATACTTATAATATCTATCTGAAAGATTCTAATGCAAGGTTTTCTCAGAAAAATGCATTGCTTTGTATGGATAATCATCATAGACTCTTTTAGACTTGGAGGGAGCAAGCATGATTAACATAACTCTTTAACTTTATAACAAGGAAGATTACATGGGGTACTTAGACTTCAGTTGATGATATTTTTGCCTGTGCAAATGGCTTTTAGGGGTTGCATTTGTGGACCTTCCTGCCACATTGCAAATACCTTGTTTTTGGATAGAGCCAAAGAATGAGCTCTCGTTTTCCATGACGCATTCAAACATTTTTAGTAAAACCAGAACTAGTCTTCTTTTTAGCTTGGTTTATCCACTACAGTGTATTTCTTGCTTAAGAACCAGTTGAAGCGGGACAGAAGACTAGGATGTAGAGGTAGTATATAATTCTTTGACCAAGCTAGTATGCAAAGATAGACCAAACTAAATATGCTTATGCATCTCATGTTCAAAGGGTATCCCGGTGCACAAAGCATCCCGAGTGTCACACTGGGTTTGGGGAAGGGCCGCACCTGCAGAGTGTGATGTAGACAATCTACCCTTATACATCTCGTGTTACTTTCTCTTATTGTTCTAGTCTCTTTTTAACAAATTGTGGAATTTATAGTAACTTTTGTGCATTTTCATTATCAGGTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAAGTGAGTTTGTCTGAGGTTCATGGTTTTATGTGGTATTGTTTATTTATTTTAGTGGGCAGTTTCAAGAATTGTGGGAAAACCTTGCATAAGAGTCTTTCGAAGGCAGTTTCAAGATACTATTTTAGTGGATATTGATAATGTGTACTTTCAGTTAATTAGACGACCTCTAGGTTTGAGAACTGCAAACTAGTCTGGGATGGTGGTATGCATCATCTGCCGCTGTTTCACTCTGTTTTGGCAAATTTCATTGATATATTAACAGAAAAATTGGAGGCTTCTGAATCCAGAATTTCTATAGATCTATATTATATTTCTTCTGATATGTTTGAACAAATTTTGTTTACAAAAGAGTTCTCTCAAGCAAAAGAAAAGGCTGCAAGATTCTTAGGTTTTCATTTAGCAGTTTTGAAGAGAAGTATTAATCTGACTATGTTGCAGGCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAAGTGAGCTTGGCATTTTTGGTGTTGATTAGTTTTTCTTTGAGAAAATATGCTGACCTCTCATTGTTTGCAGGATAAGTA</genome_strand>
        <mrna_strand>CTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC..........................................................................................................................................................GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA......................................................................GATAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335225" ref_strand="+" ref_description="SGN-E335225 [cTOE-1-G23]">
      <seq>ttcatctaatgcttaaagattgaatttttagcagcaaaaatgtctattgaagaagcagttgatgaggattcgaagcaaaatcataatagtagattaacttatgaaggttgcaatgtattgcttgacatcaatgatggcgaccgtttagttttttctcgtcttactgctgcctcgacattgaaaattgggaataagaagtgttctcttcagcctcttataggttgtccattcgggtctctgtttcaagtggagccgggaaaagaaggaacctttttgactcgttttgttgagaatgcagaaggtaacggccttgaagaaaaagacgtggatggatctaaagacaaccgtgcgcttgttgataataatactgctcagagtctcactagtgaagatattgacgagatgcgaaagcagggagcaaaaggggatgaaatagttgaagcactcattgcaaacagtgcaacttttgagaagaagacattattttcacaagataagtatagggttaagaaacagaagaaatatgcacctcgagtacttttgaggcgcccctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="120303" stop="123129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120603" g_stop="120775" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120776" i_stop="120929" i_length="154">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120930" g_stop="121057" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="301" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121058" i_stop="122066" i_length="1009">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122067" g_stop="122175" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="410" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122176" i_stop="122613" i_length="438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122614" g_stop="122695" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="492" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122696" i_stop="122765" i_length="70">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122766" g_stop="122829" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="556" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E335225" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120603" e_stop="120775"/>
          <exon e_start="120930" e_stop="121057"/>
          <exon e_start="122067" e_stop="122175"/>
          <exon e_start="122614" e_stop="122695"/>
          <exon e_start="122766" e_stop="122829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTCGTAAGTAATTACATCCGATTTTTTTTTGCTTCTGTCTGCTGCATTTAGTTTTGTAATTGAGATATAGTTGATTGATTTTAGTGCATAAAGATGCAGTTTTTTGTTCTGGATTATGGATTTTTGAACTGATGGAGAAGTTGTGTTGTGCATGCAGGACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAGGTATTCTTCTGATTTAGCCTTTTCATCTTCTATGAGTACTGTTTTCTCTGTTCTTCAATTAGTTATTATTACTAAGTTTATTCAACTTGGGGCGGTAGTCATTTACTGGGAGTACTTAGTTTTTGAAGTAGTCAATTACTAAAAAAGGCAGCCAGATACACTAAGCTCTTCCTATGTGCCGATCACGATGTATCATACACATCCTTACCCTCATTTCTGAAAGTGTTCTTTTTCACATCTCAGAGCCCTTGAGTTCACGTGACAGTCTGACAATTTTATGTGTAATGTAATTATATAGCATTACAGATAATAGGGCTAATCAGCCTATTATGTTTAATGGTATATACTTATAATATCTATCTGAAAGATTCTAATGCAAGGTTTTCTCAGAAAAATGCATTGCTTTGTATGGATAATCATCATAGACTCTTTTAGACTTGGAGGGAGCAAGCATGATTAACATAACTCTTTAACTTTATAACAAGGAAGATTACATGGGGTACTTAGACTTCAGTTGATGATATTTTTGCCTGTGCAAATGGCTTTTAGGGGTTGCATTTGTGGACCTTCCTGCCACATTGCAAATACCTTGTTTTTGGATAGAGCCAAAGAATGAGCTCTCGTTTTCCATGACGCATTCAAACATTTTTAGTAAAACCAGAACTAGTCTTCTTTTTAGCTTGGTTTATCCACTACAGTGTATTTCTTGCTTAAGAACCAGTTGAAGCGGGACAGAAGACTAGGATGTAGAGGTAGTATATAATTCTTTGACCAAGCTAGTATGCAAAGATAGACCAAACTAAATATGCTTATGCATCTCATGTTCAAAGGGTATCCCGGTGCACAAAGCATCCCGAGTGTCACACTGGGTTTGGGGAAGGGCCGCACCTGCAGAGTGTGATGTAGACAATCTACCCTTATACATCTCGTGTTACTTTCTCTTATTGTTCTAGTCTCTTTTTAACAAATTGTGGAATTTATAGTAACTTTTGTGCATTTTCATTATCAGGTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAAGTGAGTTTGTCTGAGGTTCATGGTTTTATGTGGTATTGTTTATTTATTTTAGTGGGCAGTTTCAAGAATTGTGGGAAAACCTTGCATAAGAGTCTTTCGAAGGCAGTTTCAAGATACTATTTTAGTGGATATTGATAATGTGTACTTTCAGTTAATTAGACGACCTCTAGGTTTGAGAACTGCAAACTAGTCTGGGATGGTGGTATGCATCATCTGCCGCTGTTTCACTCTGTTTTGGCAAATTTCATTGATATATTAACAGAAAAATTGGAGGCTTCTGAATCCAGAATTTCTATAGATCTATATTATATTTCTTCTGATATGTTTGAACAAATTTTGTTTACAAAAGAGTTCTCTCAAGCAAAAGAAAAGGCTGCAAGATTCTTAGGTTTTCATTTAGCAGTTTTGAAGAGAAGTATTAATCTGACTATGTTGCAGGCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAAGTGAGCTTGGCATTTTTGGTGTTGATTAGTTTTTCTTTGAGAAAATATGCTGACCTCTCATTGTTTGCAGGATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTG</genome_strand>
        <mrna_strand>TTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC..........................................................................................................................................................GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA......................................................................GATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345277" ref_strand="+" ref_description="SGN-E345277 [cTOF-13-N17]">
      <seq>taatgcttaaagattgaatttttagcagcaaaaatgtctattgaagaagcagttgatgaggattcgaagcaaaatcataatagtagattaacttatgaaggttgcaatgtattgcttgacatcaatgatggcgaccgtttagttttttctcgtcttactgctgcctcgacattgaaaattgggaataagaagtgttctcttcagcctcttataggttgtccattcgggtctctgtttcaagtggagccgggaaaagaaggaacctttttgactcgttttgttgagaatgcagaaggtaacggccttgaagaaaaagacgtggatggatctaaagacaaccgtgcgcttgttgataataatactgctcagagtctcactagtgaagatattgacgagatgcgaaagcagggagcaaaaggggatgaaatagttgaagcactcattgcaaacagtgcaacttttgagaagaagacattattttcacaagataagtatagggttaagaaacagaagaaatatgcacctcgagtacttttgaggcgcccctttgcacgaagcatttgtgaggcctacttcaagaaacatcctgaaaaaatcggattcatgcgagtggatgcactatctctactgctctccttggggaatgttactgctaatgcagatgtactttgtagtggacatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="120309" stop="124222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120609" g_stop="120775" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120776" i_stop="120929" i_length="154">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120930" g_stop="121057" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="295" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121058" i_stop="122066" i_length="1009">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122067" g_stop="122175" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="404" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122176" i_stop="122613" i_length="438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122614" g_stop="122695" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="486" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122696" i_stop="122765" i_length="70">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122766" g_stop="122836" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="557" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122837" i_stop="123513" i_length="677">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123514" g_stop="123555" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="599" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123556" i_stop="123837" i_length="282">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123838" g_stop="123922" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="685" r_length="86" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E345277" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120609" e_stop="120775"/>
          <exon e_start="120930" e_stop="121057"/>
          <exon e_start="122067" e_stop="122175"/>
          <exon e_start="122614" e_stop="122695"/>
          <exon e_start="122766" e_stop="122836"/>
          <exon e_start="123514" e_stop="123555"/>
          <exon e_start="123838" e_stop="123922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTCGTAAGTAATTACATCCGATTTTTTTTTGCTTCTGTCTGCTGCATTTAGTTTTGTAATTGAGATATAGTTGATTGATTTTAGTGCATAAAGATGCAGTTTTTTGTTCTGGATTATGGATTTTTGAACTGATGGAGAAGTTGTGTTGTGCATGCAGGACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAGGTATTCTTCTGATTTAGCCTTTTCATCTTCTATGAGTACTGTTTTCTCTGTTCTTCAATTAGTTATTATTACTAAGTTTATTCAACTTGGGGCGGTAGTCATTTACTGGGAGTACTTAGTTTTTGAAGTAGTCAATTACTAAAAAAGGCAGCCAGATACACTAAGCTCTTCCTATGTGCCGATCACGATGTATCATACACATCCTTACCCTCATTTCTGAAAGTGTTCTTTTTCACATCTCAGAGCCCTTGAGTTCACGTGACAGTCTGACAATTTTATGTGTAATGTAATTATATAGCATTACAGATAATAGGGCTAATCAGCCTATTATGTTTAATGGTATATACTTATAATATCTATCTGAAAGATTCTAATGCAAGGTTTTCTCAGAAAAATGCATTGCTTTGTATGGATAATCATCATAGACTCTTTTAGACTTGGAGGGAGCAAGCATGATTAACATAACTCTTTAACTTTATAACAAGGAAGATTACATGGGGTACTTAGACTTCAGTTGATGATATTTTTGCCTGTGCAAATGGCTTTTAGGGGTTGCATTTGTGGACCTTCCTGCCACATTGCAAATACCTTGTTTTTGGATAGAGCCAAAGAATGAGCTCTCGTTTTCCATGACGCATTCAAACATTTTTAGTAAAACCAGAACTAGTCTTCTTTTTAGCTTGGTTTATCCACTACAGTGTATTTCTTGCTTAAGAACCAGTTGAAGCGGGACAGAAGACTAGGATGTAGAGGTAGTATATAATTCTTTGACCAAGCTAGTATGCAAAGATAGACCAAACTAAATATGCTTATGCATCTCATGTTCAAAGGGTATCCCGGTGCACAAAGCATCCCGAGTGTCACACTGGGTTTGGGGAAGGGCCGCACCTGCAGAGTGTGATGTAGACAATCTACCCTTATACATCTCGTGTTACTTTCTCTTATTGTTCTAGTCTCTTTTTAACAAATTGTGGAATTTATAGTAACTTTTGTGCATTTTCATTATCAGGTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAAGTGAGTTTGTCTGAGGTTCATGGTTTTATGTGGTATTGTTTATTTATTTTAGTGGGCAGTTTCAAGAATTGTGGGAAAACCTTGCATAAGAGTCTTTCGAAGGCAGTTTCAAGATACTATTTTAGTGGATATTGATAATGTGTACTTTCAGTTAATTAGACGACCTCTAGGTTTGAGAACTGCAAACTAGTCTGGGATGGTGGTATGCATCATCTGCCGCTGTTTCACTCTGTTTTGGCAAATTTCATTGATATATTAACAGAAAAATTGGAGGCTTCTGAATCCAGAATTTCTATAGATCTATATTATATTTCTTCTGATATGTTTGAACAAATTTTGTTTACAAAAGAGTTCTCTCAAGCAAAAGAAAAGGCTGCAAGATTCTTAGGTTTTCATTTAGCAGTTTTGAAGAGAAGTATTAATCTGACTATGTTGCAGGCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAAGTGAGCTTGGCATTTTTGGTGTTGATTAGTTTTTCTTTGAGAAAATATGCTGACCTCTCATTGTTTGCAGGATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAGGTACACTCCTGTCTTTAAATCTCCTTTAGTTATTCTGGAGATAGACGTACTACTTCCTGATTTTTCCTTCATTTATAACTTAATCTTTGGAGAAGGGGAAGGTAGAACGAGATTGGATAATGTTTTCACTGCATTTCTTTGATATAGCTTAGTAAATAAAACTCTAAGATTGGTAATGTAATCAAAATTAAACAAGTTACTTTCATATGCTGCAAAATGTTGCACGTTCGCCCCAGGTGGAAGAAGGCAGTATTTCTTATTTGAGCAATGATCCAGTAACTGTCTATTTGTTGTAACTAGATTATACCACTTCATTCATGTGGAACACTCAGTTTTTCTGTGGATGAGTATGTCCTCGTATTGCTTTTTGATTAGTAAAGCATTTTAGGGCTTGTGGATTGTGTTTCACTTTTTATGATTTTCTTTTTTTAATTCAGGTGATAAGTAAAACATATAATGGTAGTTTTTCATTAATTTCTTCTAAGCACTATTGTTCTTCAAATCATATAATTGATTGTTCTGCATTTAATTTCTGAACTTGAAATCCCCAAGCTATTAGTGGTGATGTCAGATGTAGATAGTCGTAATACTACATTTGGTTTCTAGTTGCAAATCCCATAGTCGTTATCTTCCTCAATCTTTTCTTTAATTTCTAACATACCTCTTGCATTTTTCAGCATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGGGTAATAATATGGTCTTTTCTTGTGTTTGATCAAATATCTTCATCTGTTGTTTCTGGTTATGATTTGTCTTTTTGATGGGAGGGAAAGAAGGATAGACATTGATAACTTATTTTAGCATCAGAAAATCTTGAAATCTGATATATCCTCCTTGATGTTATTTTTCTTTGTGGTTCAGATGCTCACTGTAGTCTAATAACCCAAAGTTTCATATCTTATTCATTTTGCTTTGCATGATTCTGGGTTTACATGGGGGTTGATTTTATATCCTCTTGATTCCATCAGATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAAATGCAGATGTAC-TTGTAGTGGACATGCTC</genome_strand>
        <mrna_strand>TAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC..........................................................................................................................................................GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA......................................................................GATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG..........................................................................................................................................................................................................................................................................................ATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCTAATGCAGATGTACTTTGTAGTGGACATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439268" ref_strand="+" ref_description="SGN-E439268 [cSTA-11-D15]">
      <seq>tgaaaaagcagttgatgaggatttgaagcaaaatcataatagtagattaacttatgaaggttgcaatgtattgcttgacatcaatgatggcgaccgtttagttttttctcgtcttactgctgcctcgacattgaaaattgggaataagaagtgttctcttcagcctcttataggttgtccatttgggtctctgtttcaagtggagtcgggaaaagaaggaacctttttgactcgttttgttgagaatgcagaaggtaatggccttgaagaaaaagatgtggatggatctaaagacaaccgtgcacttgttgataataatactgctcagagtctcactagtgaagatatcgatgagatgcgaaatcagggagcaaaaggggatgaaatagttgaagcactcattgcaaacagtgcaacttttgagaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="120350" stop="122980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120650" g_stop="120775" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120776" i_stop="120929" i_length="154">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120930" g_stop="121057" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="254" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121058" i_stop="122066" i_length="1009">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122067" g_stop="122175" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="363" r_length="109" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122176" i_stop="122613" i_length="438">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122614" g_stop="122680" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="430" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E439268" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120650" e_stop="120775"/>
          <exon e_start="120930" e_stop="121057"/>
          <exon e_start="122067" e_stop="122175"/>
          <exon e_start="122614" e_stop="122680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTCGTAAGTAATTACATCCGATTTTTTTTTGCTTCTGTCTGCTGCATTTAGTTTTGTAATTGAGATATAGTTGATTGATTTTAGTGCATAAAGATGCAGTTTTTTGTTCTGGATTATGGATTTTTGAACTGATGGAGAAGTTGTGTTGTGCATGCAGGACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAGGTATTCTTCTGATTTAGCCTTTTCATCTTCTATGAGTACTGTTTTCTCTGTTCTTCAATTAGTTATTATTACTAAGTTTATTCAACTTGGGGCGGTAGTCATTTACTGGGAGTACTTAGTTTTTGAAGTAGTCAATTACTAAAAAAGGCAGCCAGATACACTAAGCTCTTCCTATGTGCCGATCACGATGTATCATACACATCCTTACCCTCATTTCTGAAAGTGTTCTTTTTCACATCTCAGAGCCCTTGAGTTCACGTGACAGTCTGACAATTTTATGTGTAATGTAATTATATAGCATTACAGATAATAGGGCTAATCAGCCTATTATGTTTAATGGTATATACTTATAATATCTATCTGAAAGATTCTAATGCAAGGTTTTCTCAGAAAAATGCATTGCTTTGTATGGATAATCATCATAGACTCTTTTAGACTTGGAGGGAGCAAGCATGATTAACATAACTCTTTAACTTTATAACAAGGAAGATTACATGGGGTACTTAGACTTCAGTTGATGATATTTTTGCCTGTGCAAATGGCTTTTAGGGGTTGCATTTGTGGACCTTCCTGCCACATTGCAAATACCTTGTTTTTGGATAGAGCCAAAGAATGAGCTCTCGTTTTCCATGACGCATTCAAACATTTTTAGTAAAACCAGAACTAGTCTTCTTTTTAGCTTGGTTTATCCACTACAGTGTATTTCTTGCTTAAGAACCAGTTGAAGCGGGACAGAAGACTAGGATGTAGAGGTAGTATATAATTCTTTGACCAAGCTAGTATGCAAAGATAGACCAAACTAAATATGCTTATGCATCTCATGTTCAAAGGGTATCCCGGTGCACAAAGCATCCCGAGTGTCACACTGGGTTTGGGGAAGGGCCGCACCTGCAGAGTGTGATGTAGACAATCTACCCTTATACATCTCGTGTTACTTTCTCTTATTGTTCTAGTCTCTTTTTAACAAATTGTGGAATTTATAGTAACTTTTGTGCATTTTCATTATCAGGTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAAGTGAGTTTGTCTGAGGTTCATGGTTTTATGTGGTATTGTTTATTTATTTTAGTGGGCAGTTTCAAGAATTGTGGGAAAACCTTGCATAAGAGTCTTTCGAAGGCAGTTTCAAGATACTATTTTAGTGGATATTGATAATGTGTACTTTCAGTTAATTAGACGACCTCTAGGTTTGAGAACTGCAAACTAGTCTGGGATGGTGGTATGCATCATCTGCCGCTGTTTCACTCTGTTTTGGCAAATTTCATTGATATATTAACAGAAAAATTGGAGGCTTCTGAATCCAGAATTTCTATAGATCTATATTATATTTCTTCTGATATGTTTGAACAAATTTTGTTTACAAAAGAGTTCTCTCAAGCAAAAGAAAAGGCTGCAAGATTCTTAGGTTTTCATTTAGCAGTTTTGAAGAGAAGTATTAATCTGACTATGTTGCAGGCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAG</genome_strand>
        <mrna_strand>TGAAAAAGCAGTTGATGAGGATTTGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC..........................................................................................................................................................GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTTGGGTCTCTGTTTCAAGTGGAGTCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCCTTGAAGAAAAAGATGTGGATGGATCTAAAGACAACCGTGCACTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATCGATGAGATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451840" ref_strand="+" ref_description="SGN-E451840 [cSTS-14-K2]">
      <seq>cgtttagttttttctcgtcttactgctgcctcgacattgaaaattgggaaaaagatgtgttctcttcagcctcttataggttgtccattcgggtctctgtttcaagtggagtcgggaaaagaaggaacctttttgactcgttttgttgagaatgcagaaggtaacggccttgaagaaaaagatgtggatggatctaaagacaaccgtgcgcttgttgataataatactgctcagagtctcactagtgaagatatcgacgagatgcgaaatcagggggcaaaaggggatgaaatagttgaagcactcattgcaaacagtgcaacttttgagaagaagacattattttcacaagaaaagtatagggttaagaaacagaagaaatatgcacctcgagtactaattgangcgtccctttgcacgaagcatttgtgaggcctacttcaagaaacatcctgaaaaaatcggattcatgcgagtggattcactatctctactactctgcttggggaatgttactgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="120444" stop="124193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120744" g_stop="120775" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120776" i_stop="120929" i_length="154">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120930" g_stop="121057" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="160" r_length="128" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121058" i_stop="122066" i_length="1009">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122067" g_stop="122175" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="269" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122176" i_stop="122613" i_length="438">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122614" g_stop="122695" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="351" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122696" i_stop="122765" i_length="70">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122766" g_stop="122836" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="423" r_length="72" r_score="0.915"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122837" i_stop="123513" i_length="677">
            <donor d_prob="0.974" d_score="0.90"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123514" g_stop="123555" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="465" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123556" i_stop="123837" i_length="282">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123838" g_stop="123893" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="521" r_length="56" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E451840" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120744" e_stop="120775"/>
          <exon e_start="120930" e_stop="121057"/>
          <exon e_start="122067" e_stop="122175"/>
          <exon e_start="122614" e_stop="122695"/>
          <exon e_start="122766" e_stop="122836"/>
          <exon e_start="123514" e_stop="123555"/>
          <exon e_start="123838" e_stop="123893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTAGTTTTTTCTCGTCTTACTGCTGCCTCGTAAGTAATTACATCCGATTTTTTTTTGCTTCTGTCTGCTGCATTTAGTTTTGTAATTGAGATATAGTTGATTGATTTTAGTGCATAAAGATGCAGTTTTTTGTTCTGGATTATGGATTTTTGAACTGATGGAGAAGTTGTGTTGTGCATGCAGGACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAGGTATTCTTCTGATTTAGCCTTTTCATCTTCTATGAGTACTGTTTTCTCTGTTCTTCAATTAGTTATTATTACTAAGTTTATTCAACTTGGGGCGGTAGTCATTTACTGGGAGTACTTAGTTTTTGAAGTAGTCAATTACTAAAAAAGGCAGCCAGATACACTAAGCTCTTCCTATGTGCCGATCACGATGTATCATACACATCCTTACCCTCATTTCTGAAAGTGTTCTTTTTCACATCTCAGAGCCCTTGAGTTCACGTGACAGTCTGACAATTTTATGTGTAATGTAATTATATAGCATTACAGATAATAGGGCTAATCAGCCTATTATGTTTAATGGTATATACTTATAATATCTATCTGAAAGATTCTAATGCAAGGTTTTCTCAGAAAAATGCATTGCTTTGTATGGATAATCATCATAGACTCTTTTAGACTTGGAGGGAGCAAGCATGATTAACATAACTCTTTAACTTTATAACAAGGAAGATTACATGGGGTACTTAGACTTCAGTTGATGATATTTTTGCCTGTGCAAATGGCTTTTAGGGGTTGCATTTGTGGACCTTCCTGCCACATTGCAAATACCTTGTTTTTGGATAGAGCCAAAGAATGAGCTCTCGTTTTCCATGACGCATTCAAACATTTTTAGTAAAACCAGAACTAGTCTTCTTTTTAGCTTGGTTTATCCACTACAGTGTATTTCTTGCTTAAGAACCAGTTGAAGCGGGACAGAAGACTAGGATGTAGAGGTAGTATATAATTCTTTGACCAAGCTAGTATGCAAAGATAGACCAAACTAAATATGCTTATGCATCTCATGTTCAAAGGGTATCCCGGTGCACAAAGCATCCCGAGTGTCACACTGGGTTTGGGGAAGGGCCGCACCTGCAGAGTGTGATGTAGACAATCTACCCTTATACATCTCGTGTTACTTTCTCTTATTGTTCTAGTCTCTTTTTAACAAATTGTGGAATTTATAGTAACTTTTGTGCATTTTCATTATCAGGTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAAGTGAGTTTGTCTGAGGTTCATGGTTTTATGTGGTATTGTTTATTTATTTTAGTGGGCAGTTTCAAGAATTGTGGGAAAACCTTGCATAAGAGTCTTTCGAAGGCAGTTTCAAGATACTATTTTAGTGGATATTGATAATGTGTACTTTCAGTTAATTAGACGACCTCTAGGTTTGAGAACTGCAAACTAGTCTGGGATGGTGGTATGCATCATCTGCCGCTGTTTCACTCTGTTTTGGCAAATTTCATTGATATATTAACAGAAAAATTGGAGGCTTCTGAATCCAGAATTTCTATAGATCTATATTATATTTCTTCTGATATGTTTGAACAAATTTTGTTTACAAAAGAGTTCTCTCAAGCAAAAGAAAAGGCTGCAAGATTCTTAGGTTTTCATTTAGCAGTTTTGAAGAGAAGTATTAATCTGACTATGTTGCAGGCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAAGTGAGCTTGGCATTTTTGGTGTTGATTAGTTTTTCTTTGAGAAAATATGCTGACCTCTCATTGTTTGCAGGATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACT-TTTGAGGCGCCCCTTTGCACGAAGGTACACTCCTGTCTTTAAATCTCCTTTAGTTATTCTGGAGATAGACGTACTACTTCCTGATTTTTCCTTCATTTATAACTTAATCTTTGGAGAAGGGGAAGGTAGAACGAGATTGGATAATGTTTTCACTGCATTTCTTTGATATAGCTTAGTAAATAAAACTCTAAGATTGGTAATGTAATCAAAATTAAACAAGTTACTTTCATATGCTGCAAAATGTTGCACGTTCGCCCCAGGTGGAAGAAGGCAGTATTTCTTATTTGAGCAATGATCCAGTAACTGTCTATTTGTTGTAACTAGATTATACCACTTCATTCATGTGGAACACTCAGTTTTTCTGTGGATGAGTATGTCCTCGTATTGCTTTTTGATTAGTAAAGCATTTTAGGGCTTGTGGATTGTGTTTCACTTTTTATGATTTTCTTTTTTTAATTCAGGTGATAAGTAAAACATATAATGGTAGTTTTTCATTAATTTCTTCTAAGCACTATTGTTCTTCAAATCATATAATTGATTGTTCTGCATTTAATTTCTGAACTTGAAATCCCCAAGCTATTAGTGGTGATGTCAGATGTAGATAGTCGTAATACTACATTTGGTTTCTAGTTGCAAATCCCATAGTCGTTATCTTCCTCAATCTTTTCTTTAATTTCTAACATACCTCTTGCATTTTTCAGCATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGGGTAATAATATGGTCTTTTCTTGTGTTTGATCAAATATCTTCATCTGTTGTTTCTGGTTATGATTTGTCTTTTTGATGGGAGGGAAAGAAGGATAGACATTGATAACTTATTTTAGCATCAGAAAATCTTGAAATCTGATATATCCTCCTTGATGTTATTTTTCTTTGTGGTTCAGATGCTCACTGTAGTCTAATAACCCAAAGTTTCATATCTTATTCATTTTGCTTTGCATGATTCTGGGTTTACATGGGGGTTGATTTTATATCCTCTTGATTCCATCAGATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAA</genome_strand>
        <mrna_strand>CGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC..........................................................................................................................................................GACATTGAAAATTGGGAAAAAGATGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGTCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCCTTGAAGAAAAAGATGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATCGACGAGATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGGGGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA......................................................................GAAAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTAATTGANGCGTCCCTTTGCACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG..........................................................................................................................................................................................................................................................................................ATTCATGCGAGTGGATTCACTATCTCTACTACTCTGCTTGGGGAATGTTACTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209925" ref_strand="+" ref_description="SGN-E209925 [cLEC-52-F2]">
      <seq>ccctttgcacgaagcatttgtgaggcctacttcaagaaacatcctgaaaaaatcggattcatgcgagtggatgcactatctctactgctctccttggggaatgttactgctaatgcagatgtacttgtagtggacatgctcagtggtattcttactggtgctattgcagaacgacttggaggtactggttatgtgtgcaatacttatcgtggatcatcaccatatcctgtcgatatcacaaggatgtttaatttaagcgatgaaatctgtaaaagaatcgtgcatgcatcactgaccgacctgaattcatttcaaactggagcttcagtgtctgagggtcaggaagaaaccttacctgtcactcattctggtggtctagacgaagttagtgtgccagctgaagatggtggcatggatgtaacacctgagagagtttcttctccaataatcaagcctgttaaatctataaaagcaggtcagaaagcaaccctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="123212" stop="125144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123514" g_stop="123555" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="56" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123556" i_stop="123837" i_length="282">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123838" g_stop="123962" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="181" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123963" i_stop="124265" i_length="303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124266" g_stop="124359" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="275" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124360" i_stop="124513" i_length="154">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124514" g_stop="124580" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="342" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124581" i_stop="124692" i_length="112">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124693" g_stop="124844" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="494" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E209925" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123514" e_stop="123555"/>
          <exon e_start="123838" e_stop="123962"/>
          <exon e_start="124266" e_stop="124359"/>
          <exon e_start="124514" e_stop="124580"/>
          <exon e_start="124693" e_stop="124844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGGGTAATAATATGGTCTTTTCTTGTGTTTGATCAAATATCTTCATCTGTTGTTTCTGGTTATGATTTGTCTTTTTGATGGGAGGGAAAGAAGGATAGACATTGATAACTTATTTTAGCATCAGAAAATCTTGAAATCTGATATATCCTCCTTGATGTTATTTTTCTTTGTGGTTCAGATGCTCACTGTAGTCTAATAACCCAAAGTTTCATATCTTATTCATTTTGCTTTGCATGATTCTGGGTTTACATGGGGGTTGATTTTATATCCTCTTGATTCCATCAGATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAGGTATGTATTTGTTCTTAACTGTAGTTACATTAAGGAAATCAAGGGATATTTGTGAATTGTGACCATTGCTTTATACACATAAAATTTGATCATGCAGCCTATACTAATGGGAAATTGTATCATGTCTGTGGATTATTGCTACTGATACTGATCGTATGTTTGTCATCATGATGTGAACGGCGCTGATGCTTATAGTTGTGAAACCATGTCGAACATGTTATAGACTTATAGTATTGTTAAAGAGTGTTAATTGCTATTTAAGTTAATGACTTTTTAATATTTTCATGACAATGATATTAGCAGGTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAGGTACACTTCCTTTTGCAATGAAATAGAAAAATTACCCAATTAGTGCACAGAGAAAAAAATTGTATATTTCAGTGGATAGCTTTTGTCTAAACTCTAAATATGTTTTACTGCATTCGTACTAACTATAAACTTTGCTGTTTGTGTATGTATCTAGAATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAGGTAAAACCATGTTGTAATGTCAAAAGTTGATCCTTTTTTGGTGTAAATTGTTTCTTCTGTAAATGCGTGCGTGGATGACTTTTAAACTTCTCTCTAAAACATGTTCCTGCAGGAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGA</genome_strand>
        <mrna_strand>CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG..........................................................................................................................................................................................................................................................................................ATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCTAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAG...............................................................................................................................................................................................................................................................................................................GTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAG..........................................................................................................................................................AATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAG................................................................................................................GAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318126" ref_strand="+" ref_description="SGN-E318126 [cTOA-29-F10]">
      <seq>tataagcttattcttagaagcacaacagggccgatagatttgtttctcttgagcaaacagggtaggcagcatgaggacataaccatcaaacatgacaagtccatggattcagtgtctgctgcaaaaaagatggatgatgcttacccatccccagcacatccttgctctttagattcaacagactcaaagctctcgggtgtccataaaatagtaccttctcataacagtatagatgatgattactggttgcgctcggaggaggcggttagcgcaactgctctgtggggcattgaataatctttaaaattgagcctggttacaaactccatatatggataccagaagatatacagaaataaggcttcttataaacatgtaaatatcttttgaagctaaaaagctttacatatctctagccagattatagtaagaaacaactggtttcagggaaactcctacaacttttgcgtacaactatatggttcacaggaatatcagtcttatgattaaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="133188" stop="134784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133488" g_stop="133540" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133541" i_stop="133734" i_length="194">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.650" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133735" g_stop="133909" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="228" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="133910" i_stop="134198" i_length="289">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134199" g_stop="134492" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="522" r_length="294" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E318126" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133488" e_stop="133540"/>
          <exon e_start="133735" e_stop="133909"/>
          <exon e_start="134199" e_stop="134492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAGCTTATTCTTAGAAGCACAACAGGGCCGATAGATTTGTTTCTCTTGAGGTATCTCCACTACATGACTAGCTTCTCTCCTTTTGTAACATATGGGTGTATGTATAGCTTGGCTGGTTCACTAATTCTCTTTGTGTAGTAGTAGTCTCCCCTAAAAAGAAAGTGATATTTTACTGTACAAGCAAAAAAAATAAAGAAAGAAACTTCAAGGCCCAATTAACTAACATAATTATCAACAAATGCAGCAAACAGGGTAGGCAGCATGAGGACATAACCATCAAACATGACAAGTCCATGGATTCAGTGTCTGCTGCAAAAAAGATGGATGATGCTTACCCATCCCCAGCACATCCTTGCTCTTTAGATTCAACAGACTCAAAGCTCTCGGGTGTCCATAAAATAGTACCTTCTCATAACAGTGTAAGTATATGACTGAACCCCTCTCTTTCCCTTTCGAATTTATTGGTATCTCTTCCTCTATTGCATAAGTTAAAATGCATGTGAATCAGTATGGTTAAACACCATCAGCCTTGTTGTTTTGAAGTGACTAAGTAATTCGAAGCAATGGGCTATCCCTTTTTTAATATTAACCGGCAAAGTAATCCAATTAATAAGCCGTCAATTCTTGTAACAATAGTTATTCTATAGTAGTGAATTCATATGAAAACACTGATTATAATCCACAACATGTTCTTCCCCTAAACTGCAGATAGATGATGATTACTGGTTGCGCTCGGAGGAGGCGGTTAGCGCAACTGCTCTGTGGGGCATTGAATAATCTTTAAAATTGAGCCTGGTTACAAACTCCATATATGGATACCAGAAGATATACAGAAATAAGGCTTCTTATAAACATGTAAATATCTTTTGAAGCTAAAAAGCTTTACATATCTCTAGCCAGATTATAGTAAGAAACAACTGGTTTCAGGGAAACTCCTACAACTTTTGCGTACAACTATATGGTTCACAGGAATATCAGTCTTATGATTAACCAATGCTGGGA</genome_strand>
        <mrna_strand>TATAAGCTTATTCTTAGAAGCACAACAGGGCCGATAGATTTGTTTCTCTTGAG..................................................................................................................................................................................................CAAACAGGGTAGGCAGCATGAGGACATAACCATCAAACATGACAAGTCCATGGATTCAGTGTCTGCTGCAAAAAAGATGGATGATGCTTACCCATCCCCAGCACATCCTTGCTCTTTAGATTCAACAGACTCAAAGCTCTCGGGTGTCCATAAAATAGTACCTTCTCATAACAGT.................................................................................................................................................................................................................................................................................................ATAGATGATGATTACTGGTTGCGCTCGGAGGAGGCGGTTAGCGCAACTGCTCTGTGGGGCATTGAATAATCTTTAAAATTGAGCCTGGTTACAAACTCCATATATGGATACCAGAAGATATACAGAAATAAGGCTTCTTATAAACATGTAAATATCTTTTGAAGCTAAAAAGCTTTACATATCTCTAGCCAGATTATAGTAAGAAACAACTGGTTTCAGGGAAACTCCTACAACTTTTGCGTACAACTATATGGTTCACAGGAATATCAGTCTTATGATTAACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350494" ref_strand="+" ref_description="SGN-E350494 [cTOS-5-I3]">
      <seq>aaagacaaggacctcaaacaacccttgatttatgtcatcaagtacttaaccccccatggtaatttgaatatgtagtttatatacatcggaaaaaggattggttcttcaatgtacatctggcatatcttagttcattcattactgttgtccatgattttttagcatggctcgaaaagtataagggtcgtcgagtgtgtaggattgccagatgcaattaccattcattattaaatatccaaattatagtacttacgtttgtgtgaaggtgggaaaatgatcatgaatctatgaagttaagagttatcttagaggatcactgtacatacatataaacatctggttcttgagatggcttggttgatgtactgaatggtaattggaatgggactgggcttctataattgtatctcttctaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="135926" stop="134907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135626" g_stop="135199" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E350494" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135626" e_stop="135199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACAAGGACCTCAAACAACCCTTGATTTATGTCATCAAGTACTTAACCCCCCATGGTAATTTGAATATGTAGTTTATATACATCGGAAAAAGGATTGGTTCTTCAATGTACATCTGGCATATCTTAGTTCATTCATTACTGTTGTCCATGATTTTTTAGCATGGCTCGAAAAGTATAAGGGTCGTCGAGTGTGTAGGATTGCCAGATGCAATTACCATTCATTATTAAATATCCAAATTATAGTACTTACGTTTGTGTGAAGGTGGGAAAATGATCATGAATCTATGAAGTTAAGAGTTATCTTAGAGGATCACTGTACATACATATAAACATCTGGTTCTTGAGATGGCTTGGTTGATGTACTGAATGGTAATTGGAATGGGACTGGGCTTCTATAATTGTATCTCTTCTAATAAACTTTTGAA</genome_strand>
        <mrna_strand>AAAGACAAGGACCTCAAACAACCCTTGATTTATGTCATCAAGTACTTAACCCCCCATGGTAATTTGAATATGTAGTTTATATACATCGGAAAAAGGATTGGTTCTTCAATGTACATCTGGCATATCTTAGTTCATTCATTACTGTTGTCCATGATTTTTTAGCATGGCTCGAAAAGTATAAGGGTCGTCGAGTGTGTAGGATTGCCAGATGCAATTACCATTCATTATTAAATATCCAAATTATAGTACTTACGTTTGTGTGAAGGTGGGAAAATGATCATGAATCTATGAAGTTAAGAGTTATCTTAGAGGATCACTGTACATACATATAAACATCTGGTTCTTGAGATGGCTTGGTTGATGTACTGAATGGTAATTGGAATGGGACTGGGCTTCTATAATTGTATCTCTTCTAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354342" ref_strand="+" ref_description="SGN-E354342 [cTOS-17-E1]">
      <seq>aaagacaaggacctcaaacaacccttgatttatgtcatcaagtacttaaccccccatggtaatttgaatatgtagtttatatacatcggaaaaaggattggttcttcaatgtacatctggcatatcttagttcattcattactgttgtccatgattttttagcatggctcgaaaagtataagggtcgtcgagtgtgtaggattgccagatgcaattaccattcattattaaatatccaaattatagtacttacgtttgtgtgaaggtgggaaaatgatcatgaatctatgaagttaagagttatcttagaggatcactgtacatacatataaacatctggttcttgagatggcttggttgatgtactgaatggtaattggaatgggactgggcttctataattgtatctcttctaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="135926" stop="134907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135626" g_stop="135199" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E354342" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135626" e_stop="135199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACAAGGACCTCAAACAACCCTTGATTTATGTCATCAAGTACTTAACCCCCCATGGTAATTTGAATATGTAGTTTATATACATCGGAAAAAGGATTGGTTCTTCAATGTACATCTGGCATATCTTAGTTCATTCATTACTGTTGTCCATGATTTTTTAGCATGGCTCGAAAAGTATAAGGGTCGTCGAGTGTGTAGGATTGCCAGATGCAATTACCATTCATTATTAAATATCCAAATTATAGTACTTACGTTTGTGTGAAGGTGGGAAAATGATCATGAATCTATGAAGTTAAGAGTTATCTTAGAGGATCACTGTACATACATATAAACATCTGGTTCTTGAGATGGCTTGGTTGATGTACTGAATGGTAATTGGAATGGGACTGGGCTTCTATAATTGTATCTCTTCTAATAAACTTTTGAA</genome_strand>
        <mrna_strand>AAAGACAAGGACCTCAAACAACCCTTGATTTATGTCATCAAGTACTTAACCCCCCATGGTAATTTGAATATGTAGTTTATATACATCGGAAAAAGGATTGGTTCTTCAATGTACATCTGGCATATCTTAGTTCATTCATTACTGTTGTCCATGATTTTTTAGCATGGCTCGAAAAGTATAAGGGTCGTCGAGTGTGTAGGATTGCCAGATGCAATTACCATTCATTATTAAATATCCAAATTATAGTACTTACGTTTGTGTGAAGGTGGGAAAATGATCATGAATCTATGAAGTTAAGAGTTATCTTAGAGGATCACTGTACATACATATAAACATCTGGTTCTTGAGATGGCTTGGTTGATGTACTGAATGGTAATTGGAATGGGACTGGGCTTCTATAATTGTATCTCTTCTAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465350" ref_strand="+" ref_description="SGN-E465350 [cPRO-20-H22]">
      <seq>tttacttgtggtgccccaaaactaagggaactacatatgtgtatgatgccttttttaaacccgtgattttaaggcatgaacctgagattgataaaaatttgttggagttgaggaccagagcaggagatatgttctttttatactggcagaaagctgctagctatggtcagacgagggttttcgacattttacagtacattgcttcgcagtcaaatccacctccccccactcagccacaaaggcaaagcagtagaggtcgtcaacccacagcatcactaaatcgcagatcatctgcttcagcaacacaagtacaggctgaagaacaagcaccccgtgcttcttctgaatcttcaagcgaggatgaagcagattcagcagaagaggcaggatccctcaaaggtcctccanncggcttcactgcagctgcaaatgcacaaaaaacaactccctccaatcactggttttcactgtagctgcttctctgaacacacaaaaagcatctccatccagagcccttgctgaaatcatgaaaccttccacgtctggtgaaaactcagtggtgcagattgattctgtgcctccntcggccactgaaaagtgtaaccctcctactgagacagccttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="137653" stop="135360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137353" g_stop="137328" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137327" i_stop="137232" i_length="96">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.747" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137231" g_stop="137025" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="233" r_length="207" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137024" i_stop="136055" i_length="970">
            <donor d_prob="0.633" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="136054" g_stop="135659" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="628" r_length="395" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E465350" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137353" e_stop="137328"/>
          <exon e_start="137231" e_stop="137025"/>
          <exon e_start="136054" e_stop="135659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTTGTGGTGCCCCAAAACTAAGGTATGCAAATATTGAAAAACAAATATTCTGTCTTTGATCGGCTTCAGTTTCATATTAATCTAATTAGTTCATCATCTTATCATAAAATTACTGCAGGGAACTACATACGTCTATGATGCCTTTTTTAAACCTGTGATATTAAGGCATGAACCTGAGATTGATAAAAGTTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGCCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAGGTTGTCGTTAAGATGTGTTTCAGAGTTTATATGCAAGCTCAATTATTTTCAGCATTTCAAACATGCTCTTTACTAAATGATAGTCTTAGCTGTTTGAAATTTGAAGATCGTATTAATTTTAGAATTTGCATGCTTTTGAATCCATACAGCTGTGTTGCAATGCAACTCCACAAAGTCCTTCTCTAATTGTCCGTGCTGATTTGAAGGTTAAGGAGTGATTATTCATAAGAGTCTTAATATATAACACATGCTTGTGAAGCCTTGGGGTTTACTAGATAGGTTGAATCTTTTCAGACTTAGAAATGGGGAGGTTGGGGGTTCAGTGTAGGTGATAGCCAGACTACAGATAATGAACTGTTGCATTGCTGAGTGGATTTGTTTGTGTTTGTCATTCTAAGTTGGATTCGCTATTTAACTTTCCGGCCGGGAAAGTTAATTTTAGCTGTACGTTGGAATATGGGGTTAGAATCTAAGGGGAAACTTTGTTGCTGGGTGACCTGTGTATTTTTCATGAGGTGTATTGTTGACTGCATGACTTCCCCACCCAGAGTTATCTGTACAAAATTGCATACACATGTTTTATGTGGCTTCAGTGTTTTTTTGGCTATAAGACAATCCACCATACATGTTTTTTTTACTCTCATAATTATAGACACGAATAATTCCCATTTCCGTTTTACTTTATCAAAAAGAGAAAATATCAATGACAATAATAACAATAGACAAGAACTAACCTAACTAATCAAGTACAAGAGTTCTCTGTGTTTAACATAATATTTTCAGTAATGTAGCCCCTATTGTAAATTTCTTACAACACTTGTTCTGAGATTAATACAATACTTTTAACAATTTAAAAAAAAAAAGAATCTTCGATGTTCAATTGGTAGTCTAATGATTAGCTGTAAGATTGTGAGTGCTGAATTTGATCCCAGTTTTAAATATCAATTTGAGCTGTCTTTCAAAATTGCAGACACACAGGCAAAGCAGTAGAGGTCGTCAACCCACAGCATCACTAAATCGCAGGTCATCTGCTTCAGCAACACAAGTACAGGCTGAAGAACAAGCACCCCGTGCTTCTTCTGAATCTTCAAGCGAGGATGAAGCAGATTCAGCAGAAGAGGCAGGATCCTCCAAAGGTCCTCCA-CCTGCTTCCACTGCCGCTGCAAATGCACAAAAAACAACTCCCTCCAAATCACTGGTTTCAACTGTAGCTGCTTCTCTGAACACACAAAAAGCATCTCCCTCCAAATCCCTTGCTGAAATCACAAAACCTTCCACGTCTGTTGAAACTCGAGTGGTGCAGATTGATTCTGTGCCTCCCTCAGCCACTGAAAGTGTTAACCCTCCTGCTGAGACAGCCTTGGAG</genome_strand>
        <mrna_strand>TTTACTTGTGGTGCCCCAAAACTAAG................................................................................................GGAACTACATATGTGTATGATGCCTTTTTTAAACCCGTGATTTTAAGGCATGAACCTGAGATTGATAAAAATTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGTCAGACGAGGGTTTTCGACATTTTACAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAAAGGCAAAGCAGTAGAGGTCGTCAACCCACAGCATCACTAAATCGCAGATCATCTGCTTCAGCAACACAAGTACAGGCTGAAGAACAAGCACCCCGTGCTTCTTCTGAATCTTCAAGCGAGGATGAAGCAGATTCAGCAGAAGAGGCAGGATCCCTCAAAGGTCCTCCANNCGGCTT-CACTGCAGCTGCAAATGCACAAAAAACAACTCCCTCC-AATCACTGGTTTTCACTGTAGCTGCTTCTCTGAACACACAAAAAGCATCTCCATCCAGAGCCCTTGCTGAAATCATGAAACCTTCCACGTCTGGTGAAAACTCAGTGGTGCAGATTGATTCTGTGCCTCCNTCGGCCACTGAAAAGTGTAACCCTCCTACTGAGACAGCCTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463125" ref_strand="+" ref_description="SGN-E463125 [cPRO-13-N11]">
      <seq>ctttgttcttttcaagggttccaatgtacagtgaagctaagctggcattcgtcatttacttgtggtgccccaaaactaagggaactacatatgtgtatgatgccttttttaaacccgtgattttaaggcatgaacctgagattgataaaaatttgttggagttgaggaccagagcaggagatatgttctttttatactggcagaaagctgctagctatggtcagacgagggttttcgacattttacagtacattgcttcgcagtcaaatccacctccccccactcagccacaaaggcaaagcagtagaggtcgtcaacccacagcatcactaaatcgcagatcatctgcttcagcaacacaagtacaggctgaagaacaagcaccccgtgcttcttctgaatcttcaagcgaggatgaagcagattcagcagaagaggcaggatcctccaaaggtcctccaccggcttccactgcagctgcaaatgcacaaaaaacaactccctccaaatcactggtttcaactgtagctgcttctctgaacacacaaaaagcatctccatccagagcccttgctgaaatcatgaaaccttccacgtctgttgaaactcgagtggtgcagattgattctgtgccttcctcggccactgaaagtgttaaccctcctactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="137706" stop="135373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137406" g_stop="137328" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137327" i_stop="137232" i_length="96">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137231" g_stop="137025" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="287" r_length="207" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137024" i_stop="136055" i_length="970">
            <donor d_prob="0.633" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="136054" g_stop="135673" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="669" r_length="382" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E463125" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137406" e_stop="137328"/>
          <exon e_start="137231" e_stop="137025"/>
          <exon e_start="136054" e_stop="135673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTT-TTCTTTTCAAGGGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAGGTATGCAAATATTGAAAAACAAATATTCTGTCTTTGATCGGCTTCAGTTTCATATTAATCTAATTAGTTCATCATCTTATCATAAAATTACTGCAGGGAACTACATACGTCTATGATGCCTTTTTTAAACCTGTGATATTAAGGCATGAACCTGAGATTGATAAAAGTTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGCCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAGGTTGTCGTTAAGATGTGTTTCAGAGTTTATATGCAAGCTCAATTATTTTCAGCATTTCAAACATGCTCTTTACTAAATGATAGTCTTAGCTGTTTGAAATTTGAAGATCGTATTAATTTTAGAATTTGCATGCTTTTGAATCCATACAGCTGTGTTGCAATGCAACTCCACAAAGTCCTTCTCTAATTGTCCGTGCTGATTTGAAGGTTAAGGAGTGATTATTCATAAGAGTCTTAATATATAACACATGCTTGTGAAGCCTTGGGGTTTACTAGATAGGTTGAATCTTTTCAGACTTAGAAATGGGGAGGTTGGGGGTTCAGTGTAGGTGATAGCCAGACTACAGATAATGAACTGTTGCATTGCTGAGTGGATTTGTTTGTGTTTGTCATTCTAAGTTGGATTCGCTATTTAACTTTCCGGCCGGGAAAGTTAATTTTAGCTGTACGTTGGAATATGGGGTTAGAATCTAAGGGGAAACTTTGTTGCTGGGTGACCTGTGTATTTTTCATGAGGTGTATTGTTGACTGCATGACTTCCCCACCCAGAGTTATCTGTACAAAATTGCATACACATGTTTTATGTGGCTTCAGTGTTTTTTTGGCTATAAGACAATCCACCATACATGTTTTTTTTACTCTCATAATTATAGACACGAATAATTCCCATTTCCGTTTTACTTTATCAAAAAGAGAAAATATCAATGACAATAATAACAATAGACAAGAACTAACCTAACTAATCAAGTACAAGAGTTCTCTGTGTTTAACATAATATTTTCAGTAATGTAGCCCCTATTGTAAATTTCTTACAACACTTGTTCTGAGATTAATACAATACTTTTAACAATTTAAAAAAAAAAAGAATCTTCGATGTTCAATTGGTAGTCTAATGATTAGCTGTAAGATTGTGAGTGCTGAATTTGATCCCAGTTTTAAATATCAATTTGAGCTGTCTTTCAAAATTGCAGACACACAGGCAAAGCAGTAGAGGTCGTCAACCCACAGCATCACTAAATCGCAGGTCATCTGCTTCAGCAACACAAGTACAGGCTGAAGAACAAGCACCCCGTGCTTCTTCTGAATCTTCAAGCGAGGATGAAGCAGATTCAGCAGAAGAGGCAGGATCCTCCAAAGGTCCTCCACCTGCTTCCACTGCCGCTGCAAATGCACAAAAAACAACTCCCTCCAAATCACTGGTTTCAACTGTAGCTGCTTCTCTGAACACACAAAAAGCATCTCCCTCCAAATCCCTTGCTGAAATCACAAAACCTTCCACGTCTGTTGAAACTCGAGTGGTGCAGATTGATTCTGTGCCTCCCTCAGCCACTGAAAGTGTTAACCCTCCTGCTG</genome_strand>
        <mrna_strand>CTTTGTTCTTTTCAAGGGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAG................................................................................................GGAACTACATATGTGTATGATGCCTTTTTTAAACCCGTGATTTTAAGGCATGAACCTGAGATTGATAAAAATTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGTCAGACGAGGGTTTTCGACATTTTACAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAAAGGCAAAGCAGTAGAGGTCGTCAACCCACAGCATCACTAAATCGCAGATCATCTGCTTCAGCAACACAAGTACAGGCTGAAGAACAAGCACCCCGTGCTTCTTCTGAATCTTCAAGCGAGGATGAAGCAGATTCAGCAGAAGAGGCAGGATCCTCCAAAGGTCCTCCACCGGCTTCCACTGCAGCTGCAAATGCACAAAAAACAACTCCCTCCAAATCACTGGTTTCAACTGTAGCTGCTTCTCTGAACACACAAAAAGCATCTCCATCCAGAGCCCTTGCTGAAATCATGAAACCTTCCACGTCTGTTGAAACTCGAGTGGTGCAGATTGATTCTGTGCCTTCCTCGGCCACTGAAAGTGTTAACCCTCCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606036" ref_strand="+" ref_description="SGN-E606036 [21971]">
      <seq>cacccccgtatctctctctcatacacctctcttacgccgacatcgcaacggttcgccggagtactgcggcggtgccaccaacatctgaaaaattaactccgtttacttgcctgctttgctttaagtaacggccaattcgccggattttctagtcagtttaccggtgtttgctttggattgatcagcaaaaggaattcaagatgattggatcttttatcaccagagtgcttgtgatggtttttggttatgcttatccagcttatgaatgcttcaaaactgtggaaatgaacaaacctgatattcagcaactccgcttttggtgccaatattggatcttagttgctatgttgacaatttgtgagaggttcggtgatgcttttatttcatgggttccaatgtatagtgaagctaagctggcattcgtcatttacttgtggtgccccaaaactaagggaactacatatgtgtatgatgccttttttaaacccgtgattttaaggcatgaacctgagattgataaaaatttgttggagttgaggaccagagcaggagatatgttctttttatactggcagaaagctgctagctatggtcagacgagggttttcgacattttgcagtacattgcttcgcagtcaaatccacctccccccatcagcacaaaggcaaagcagtaaggtcgtcaacccacaagatcactaaaatcgcagatcatctgtttcagcaacacaagtacaggctgaagaacaagcaccccggggcttcttctgaatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="138972" stop="135636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138672" g_stop="138489" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138488" i_stop="137894" i_length="595">
            <donor d_prob="0.841" d_score="0.96"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137893" g_stop="137853" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="232" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137852" i_stop="137750" i_length="103">
            <donor d_prob="0.638" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137749" g_stop="137651" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="331" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137650" i_stop="137570" i_length="81">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137569" g_stop="137513" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="388" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137512" i_stop="137392" i_length="121">
            <donor d_prob="0.934" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="137391" g_stop="137328" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="452" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="137327" i_stop="137232" i_length="96">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="137231" g_stop="137025" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="658" r_length="206" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="137024" i_stop="136055" i_length="970">
            <donor d_prob="0.633" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="136054" g_stop="135936" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="777" r_length="119" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E606036" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E606036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138672" e_stop="138489"/>
          <exon e_start="137893" e_stop="137853"/>
          <exon e_start="137749" e_stop="137651"/>
          <exon e_start="137569" e_stop="137513"/>
          <exon e_start="137391" e_stop="137328"/>
          <exon e_start="137231" e_stop="137025"/>
          <exon e_start="136054" e_stop="135936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCCCGTAAATCTCTTTCACACACCTCT-TCTCGCCAACATCGCAACGGTTCGCCGGAGAACTGCGGTGGTGCCACCAACTTCT--AAAA--AACT--GTTTACTTGCCCGCTTTGCTCTAACTAACGGCCAATTCGCCGGATTTTCTAGTCAGTTCGCCGGTGTTTGCTTTGGATTGATCAGCAAAAGGTACTGATCGGTTTGTCACAGATGTTTGTGCTCTTGTTCTGTTTGTAATTTACTATTGAACTTAATTTATTTTTGATTTTATCAGTTTTTGGATCTTATATTTTGTCTTTTATGTTTTTAGATACTTCTGAAGATATACTATTTGTTTGACATTGTTTTAGTTTCAACTTTTTAGGGATTTTTTTTAGTCTTGCTATAAACAATGAGTGATAAAGCAGATGGGAAGAAAAAGATGAAATTGTTTTAGTGTTTTGCTGCATTTTAAAGTCATTTGCAATTTTGATATTCATTTTTATACAACAAAATTGTGAGCTGAGTTTCTATGTAAACAACCACTTTTAAGGAAGGAGTAAAGTTTGCATACATCCGATTTTCAACAGACTCCACTTGTGAGATTACACTGTGTGTGTTGTTGTTGTATCAACTCAAATTGTAAGTTAAATGGATAGCTATATGAAGTAATCTATATCCATTTGGTTTCATTTGTACTCGGTTCCGTTTCAATCATCCTTAAATTAGTTCCCCTGATGCATTATCTCCCAAGTTGTGTTGATTGTAGAGCTTGGTTTAATTAGTGTTATCTTTTTTGTGTCAGGAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGTGTAAATTTCGAACTACCCTTATACAAATTATATAGAGTAGTTAATCGTGGATTTTCTATTTCTTGAGTTTCTAAAGCTTTGATCTTTGGTGTTCTTCATGTAGGATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAGATGAACAAACCAGATATTCAGCAACTCCGCTTTTGGTGCCAATATTGGTATGTTGCTACATTTTGTTAGACCTCGATGTATCTTATTGTGGATCTCCGTTCTAACTACCTCATTCCTCCAATTTTCAGGATCTTAGTTGCTATGTTGACAGTTTGTGAGAGGTTCGGTGATGCTTTTATTTCATGGTAATCATAACGAACTTGTTTGTTCAGATCGTATTTTTTGATTACTCCAACTTGTTATATTTTGAAATATTCATGTTGATGTTAACTTTCTCTTATTTGTGTGATACTTTTTCTTTTCAAGGGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAGGTATGCAAATATTGAAAAACAAATATTCTGTCTTTGATCGGCTTCAGTTTCATATTAATCTAATTAGTTCATCATCTTATCATAAAATTACTGCAGGGAACTACATACGTCTATGATGCCTTTTTTAAACCTGTGATATTAAGGCATGAACCTGAGATTGATAAAAGTTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGCCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAGGTTGTCGTTAAGATGTGTTTCAGAGTTTATATGCAAGCTCAATTATTTTCAGCATTTCAAACATGCTCTTTACTAAATGATAGTCTTAGCTGTTTGAAATTTGAAGATCGTATTAATTTTAGAATTTGCATGCTTTTGAATCCATACAGCTGTGTTGCAATGCAACTCCACAAAGTCCTTCTCTAATTGTCCGTGCTGATTTGAAGGTTAAGGAGTGATTATTCATAAGAGTCTTAATATATAACACATGCTTGTGAAGCCTTGGGGTTTACTAGATAGGTTGAATCTTTTCAGACTTAGAAATGGGGAGGTTGGGGGTTCAGTGTAGGTGATAGCCAGACTACAGATAATGAACTGTTGCATTGCTGAGTGGATTTGTTTGTGTTTGTCATTCTAAGTTGGATTCGCTATTTAACTTTCCGGCCGGGAAAGTTAATTTTAGCTGTACGTTGGAATATGGGGTTAGAATCTAAGGGGAAACTTTGTTGCTGGGTGACCTGTGTATTTTTCATGAGGTGTATTGTTGACTGCATGACTTCCCCACCCAGAGTTATCTGTACAAAATTGCATACACATGTTTTATGTGGCTTCAGTGTTTTTTTGGCTATAAGACAATCCACCATACATGTTTTTTTTACTCTCATAATTATAGACACGAATAATTCCCATTTCCGTTTTACTTTATCAAAAAGAGAAAATATCAATGACAATAATAACAATAGACAAGAACTAACCTAACTAATCAAGTACAAGAGTTCTCTGTGTTTAACATAATATTTTCAGTAATGTAGCCCCTATTGTAAATTTCTTACAACACTTGTTCTGAGATTAATACAATACTTTTAACAATTTAAAAAAAAAAAGAATCTTCGATGTTCAATTGGTAGTCTAATGATTAGCTGTAAGATTGTGAGTGCTGAATTTGATCCCAGTTTTAAATATCAATTTGAGCTGTCTTTCAAAATTGCAGACACACAGGCAAAGCAGTAGAGGTCGTCAACCCACAGCATCACT-AAATCGCAGGTCATCTGCTTCAGCAACACAAGTACAGGCTGAAGAACAAGCACCCC-GTGCTTCTTCTGAATCTTC</genome_strand>
        <mrna_strand>CACCCCCGTATCTCTCTCTCATACACCTCTCTTACGCCGACATCGCAACGGTTCGCCGGAGTACTGCGGCGGTGCCACCAACATCTGAAAAATTAACTCCGTTTACTTGCCTGCTTTGCTTTAAGTAACGGCCAATTCGCCGGATTTTCTAGTCAGTTTACCGGTGTTTGCTTTGGATTGATCAGCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGT.......................................................................................................GATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAAATGAACAAACCTGATATTCAGCAACTCCGCTTTTGGTGCCAATATTG.................................................................................GATCTTAGTTGCTATGTTGACAATTTGTGAGAGGTTCGGTGATGCTTTTATTTCATG.........................................................................................................................GGTTCCAATGTATAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAG................................................................................................GGAACTACATATGTGTATGATGCCTTTTTTAAACCCGTGATTTTAAGGCATGAACCTGAGATTGATAAAAATTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGTCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCA-TCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-CACAAAGGCAAAGCAGTA-AGGTCGTCAACCCACAAGATCACTAAAATCGCAGATCATCTGTTTCAGCAACACAAGTACAGGCTGAAGAACAAGCACCCCGGGGCTTCTTCTGAATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605705" ref_strand="+" ref_description="SGN-E605705 [21632]">
      <seq>cccgtatctctctctcatacaccctctcttacgccgaacatcgcaacggttcgccggagtactgcggcggtgccaccaacatctgaaaaattactccgtttacttgcctgctttgctttaagtaacggccaattcgccggattttctagtcagtttaccggtgtttgctttggattgatcagcaaaaggaattcaagatgattggatcttttatcaccagagtgcttgtgatggtttttggttatgcttatccagcttatgaatgcttcaaaactgtggaaatgaacaaacctgatattcagcaactccgcttttggtgccaatattggatcttagttgctatgttgacaatttgtgagaggttcggtgatgcttttatttcatgggttccaatgtatagtgaagctaagctggcattcgtcatttacttgtggtgccccaaaactaagggaactacatatgtgtatgatgccttttttaaacccgtgattttaaggcatgaacctgagattgataaaaatttgttggagttgaggaccagagcaggagatatgttctttttatactggcagaaagctgctagctatggtcagacgagggttttcgacattttgcagtacattgcttcgcagtcaaatccacctccccccactcagccacaaaggcaaagcagtagaggtcgtcaaccacagcatcactaaatcgcagatcatctgcttcagcaacacaagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="138968" stop="135676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138668" g_stop="138489" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138488" i_stop="137894" i_length="595">
            <donor d_prob="0.841" d_score="0.96"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137893" g_stop="137853" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="229" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137852" i_stop="137750" i_length="103">
            <donor d_prob="0.638" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137749" g_stop="137651" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="328" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137650" i_stop="137570" i_length="81">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137569" g_stop="137513" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="385" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137512" i_stop="137392" i_length="121">
            <donor d_prob="0.934" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="137391" g_stop="137328" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="449" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="137327" i_stop="137232" i_length="96">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="137231" g_stop="137025" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="656" r_length="207" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="137024" i_stop="136055" i_length="970">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="136054" g_stop="135976" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="734" r_length="78" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E605705" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138668" e_stop="138489"/>
          <exon e_start="137893" e_stop="137853"/>
          <exon e_start="137749" e_stop="137651"/>
          <exon e_start="137569" e_stop="137513"/>
          <exon e_start="137391" e_stop="137328"/>
          <exon e_start="137231" e_stop="137025"/>
          <exon e_start="136054" e_stop="135976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGTAAATCTCTTTCACACA-CCTCT-TCTCGCC-AACATCGCAACGGTTCGCCGGAGAACTGCGGTGGTGCCACCAACTTCT-AAAAA--ACT--GTTTACTTGCCCGCTTTGCTCTAACTAACGGCCAATTCGCCGGATTTTCTAGTCAGTTCGCCGGTGTTTGCTTTGGATTGATCAGCAAAAGGTACTGATCGGTTTGTCACAGATGTTTGTGCTCTTGTTCTGTTTGTAATTTACTATTGAACTTAATTTATTTTTGATTTTATCAGTTTTTGGATCTTATATTTTGTCTTTTATGTTTTTAGATACTTCTGAAGATATACTATTTGTTTGACATTGTTTTAGTTTCAACTTTTTAGGGATTTTTTTTAGTCTTGCTATAAACAATGAGTGATAAAGCAGATGGGAAGAAAAAGATGAAATTGTTTTAGTGTTTTGCTGCATTTTAAAGTCATTTGCAATTTTGATATTCATTTTTATACAACAAAATTGTGAGCTGAGTTTCTATGTAAACAACCACTTTTAAGGAAGGAGTAAAGTTTGCATACATCCGATTTTCAACAGACTCCACTTGTGAGATTACACTGTGTGTGTTGTTGTTGTATCAACTCAAATTGTAAGTTAAATGGATAGCTATATGAAGTAATCTATATCCATTTGGTTTCATTTGTACTCGGTTCCGTTTCAATCATCCTTAAATTAGTTCCCCTGATGCATTATCTCCCAAGTTGTGTTGATTGTAGAGCTTGGTTTAATTAGTGTTATCTTTTTTGTGTCAGGAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGTGTAAATTTCGAACTACCCTTATACAAATTATATAGAGTAGTTAATCGTGGATTTTCTATTTCTTGAGTTTCTAAAGCTTTGATCTTTGGTGTTCTTCATGTAGGATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAGATGAACAAACCAGATATTCAGCAACTCCGCTTTTGGTGCCAATATTGGTATGTTGCTACATTTTGTTAGACCTCGATGTATCTTATTGTGGATCTCCGTTCTAACTACCTCATTCCTCCAATTTTCAGGATCTTAGTTGCTATGTTGACAGTTTGTGAGAGGTTCGGTGATGCTTTTATTTCATGGTAATCATAACGAACTTGTTTGTTCAGATCGTATTTTTTGATTACTCCAACTTGTTATATTTTGAAATATTCATGTTGATGTTAACTTTCTCTTATTTGTGTGATACTTTTTCTTTTCAAGGGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAGGTATGCAAATATTGAAAAACAAATATTCTGTCTTTGATCGGCTTCAGTTTCATATTAATCTAATTAGTTCATCATCTTATCATAAAATTACTGCAGGGAACTACATACGTCTATGATGCCTTTTTTAAACCTGTGATATTAAGGCATGAACCTGAGATTGATAAAAGTTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGCCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAGGTTGTCGTTAAGATGTGTTTCAGAGTTTATATGCAAGCTCAATTATTTTCAGCATTTCAAACATGCTCTTTACTAAATGATAGTCTTAGCTGTTTGAAATTTGAAGATCGTATTAATTTTAGAATTTGCATGCTTTTGAATCCATACAGCTGTGTTGCAATGCAACTCCACAAAGTCCTTCTCTAATTGTCCGTGCTGATTTGAAGGTTAAGGAGTGATTATTCATAAGAGTCTTAATATATAACACATGCTTGTGAAGCCTTGGGGTTTACTAGATAGGTTGAATCTTTTCAGACTTAGAAATGGGGAGGTTGGGGGTTCAGTGTAGGTGATAGCCAGACTACAGATAATGAACTGTTGCATTGCTGAGTGGATTTGTTTGTGTTTGTCATTCTAAGTTGGATTCGCTATTTAACTTTCCGGCCGGGAAAGTTAATTTTAGCTGTACGTTGGAATATGGGGTTAGAATCTAAGGGGAAACTTTGTTGCTGGGTGACCTGTGTATTTTTCATGAGGTGTATTGTTGACTGCATGACTTCCCCACCCAGAGTTATCTGTACAAAATTGCATACACATGTTTTATGTGGCTTCAGTGTTTTTTTGGCTATAAGACAATCCACCATACATGTTTTTTTTACTCTCATAATTATAGACACGAATAATTCCCATTTCCGTTTTACTTTATCAAAAAGAGAAAATATCAATGACAATAATAACAATAGACAAGAACTAACCTAACTAATCAAGTACAAGAGTTCTCTGTGTTTAACATAATATTTTCAGTAATGTAGCCCCTATTGTAAATTTCTTACAACACTTGTTCTGAGATTAATACAATACTTTTAACAATTTAAAAAAAAAAAGAATCTTCGATGTTCAATTGGTAGTCTAATGATTAGCTGTAAGATTGTGAGTGCTGAATTTGATCCCAGTTTTAAATATCAATTTGAGCTGTCTTTCAAAATTGCAGACACACAGGCAAAGCAGTAGAGGTCGTCAACCCACAGCATCACTAAATCGCAGGTCATCTGCTTCAGCAACACAAGTAC</genome_strand>
        <mrna_strand>CCCGTATCTCTCTCTCATACACCCTCTCTTACGCCGAACATCGCAACGGTTCGCCGGAGTACTGCGGCGGTGCCACCAACATCTGAAAAATTACTCCGTTTACTTGCCTGCTTTGCTTTAAGTAACGGCCAATTCGCCGGATTTTCTAGTCAGTTTACCGGTGTTTGCTTTGGATTGATCAGCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGT.......................................................................................................GATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAAATGAACAAACCTGATATTCAGCAACTCCGCTTTTGGTGCCAATATTG.................................................................................GATCTTAGTTGCTATGTTGACAATTTGTGAGAGGTTCGGTGATGCTTTTATTTCATG.........................................................................................................................GGTTCCAATGTATAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAG................................................................................................GGAACTACATATGTGTATGATGCCTTTTTTAAACCCGTGATTTTAAGGCATGAACCTGAGATTGATAAAAATTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGTCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAAAGGCAAAGCAGTAGAGGTCGTCAA-CCACAGCATCACTAAATCGCAGATCATCTGCTTCAGCAACACAAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412379" ref_strand="+" ref_description="SGN-E412379 [STM-16-M21]">
      <seq>cccgtatctctctcacacacacctctcttccgccaacatcgcaacggttcgccggagtactgcggcggtgccaccaacatctaaaatattaactccgtttacttgcctgctttgctctaactaactgccaattcgccggattttctagtcagtttgccggtgtttgctttggattgatcagcaaaaggaattcaagatgattggatcttttatcaccagagtgcttgtgatggtttttggttatgcttatccagcttatgaatgcttcaaaactgtggaaatgaacaaacctgatattcagcaactccgcttttggtgccaatattggatcttagttgctatgttgacaatttgtgagaggttcggtgatgcttttatttcatgggttccaatgtacagtgaagctaagctggcattcgtcatttacttgtggtgccccaaaactaagggaactacatatgtgtatgatgccttttttaaacccgtgattttaaggcatgaacctgagattgataaaaatttgttggagttgaggaccagagcaggagatatgttctttttatactggcagaaagctgctagctatggtcagacgagggttttcgacattttacagtacattgcttcgcagtcaaatccacctncccccactcagccacaaaggcaaagcagtagaagtcgtcaacccacagcatcactaaatcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="138968" stop="135704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138668" g_stop="138489" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.856"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138488" i_stop="137894" i_length="595">
            <donor d_prob="0.841" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137893" g_stop="137853" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="228" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137852" i_stop="137750" i_length="103">
            <donor d_prob="0.638" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137749" g_stop="137651" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="327" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137650" i_stop="137570" i_length="81">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137569" g_stop="137513" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="384" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137512" i_stop="137392" i_length="121">
            <donor d_prob="0.934" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="137391" g_stop="137328" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="448" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="137327" i_stop="137232" i_length="96">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="137231" g_stop="137025" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="655" r_length="207" r_score="0.961"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="137024" i_stop="136055" i_length="970">
            <donor d_prob="0.633" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="136054" g_stop="136004" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="706" r_length="51" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E412379" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138668" e_stop="138489"/>
          <exon e_start="137893" e_stop="137853"/>
          <exon e_start="137749" e_stop="137651"/>
          <exon e_start="137569" e_stop="137513"/>
          <exon e_start="137391" e_stop="137328"/>
          <exon e_start="137231" e_stop="137025"/>
          <exon e_start="136054" e_stop="136004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGTAAATCTCTTTCACACACCTCT-TCTCGCCAACATCGCAACGGTTCGCCGGAGAACTGCGGTGGTGCCACCAACTTCT-AAA-A--AACT--GTTTACTTGCCCGCTTTGCTCTAACTAACGGCCAATTCGCCGGATTTTCTAGTCAGTTCGCCGGTGTTTGCTTTGGATTGATCAGCAAAAGGTACTGATCGGTTTGTCACAGATGTTTGTGCTCTTGTTCTGTTTGTAATTTACTATTGAACTTAATTTATTTTTGATTTTATCAGTTTTTGGATCTTATATTTTGTCTTTTATGTTTTTAGATACTTCTGAAGATATACTATTTGTTTGACATTGTTTTAGTTTCAACTTTTTAGGGATTTTTTTTAGTCTTGCTATAAACAATGAGTGATAAAGCAGATGGGAAGAAAAAGATGAAATTGTTTTAGTGTTTTGCTGCATTTTAAAGTCATTTGCAATTTTGATATTCATTTTTATACAACAAAATTGTGAGCTGAGTTTCTATGTAAACAACCACTTTTAAGGAAGGAGTAAAGTTTGCATACATCCGATTTTCAACAGACTCCACTTGTGAGATTACACTGTGTGTGTTGTTGTTGTATCAACTCAAATTGTAAGTTAAATGGATAGCTATATGAAGTAATCTATATCCATTTGGTTTCATTTGTACTCGGTTCCGTTTCAATCATCCTTAAATTAGTTCCCCTGATGCATTATCTCCCAAGTTGTGTTGATTGTAGAGCTTGGTTTAATTAGTGTTATCTTTTTTGTGTCAGGAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGTGTAAATTTCGAACTACCCTTATACAAATTATATAGAGTAGTTAATCGTGGATTTTCTATTTCTTGAGTTTCTAAAGCTTTGATCTTTGGTGTTCTTCATGTAGGATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAGATGAACAAACCAGATATTCAGCAACTCCGCTTTTGGTGCCAATATTGGTATGTTGCTACATTTTGTTAGACCTCGATGTATCTTATTGTGGATCTCCGTTCTAACTACCTCATTCCTCCAATTTTCAGGATCTTAGTTGCTATGTTGACAGTTTGTGAGAGGTTCGGTGATGCTTTTATTTCATGGTAATCATAACGAACTTGTTTGTTCAGATCGTATTTTTTGATTACTCCAACTTGTTATATTTTGAAATATTCATGTTGATGTTAACTTTCTCTTATTTGTGTGATACTTTTTCTTTTCAAGGGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAGGTATGCAAATATTGAAAAACAAATATTCTGTCTTTGATCGGCTTCAGTTTCATATTAATCTAATTAGTTCATCATCTTATCATAAAATTACTGCAGGGAACTACATACGTCTATGATGCCTTTTTTAAACCTGTGATATTAAGGCATGAACCTGAGATTGATAAAAGTTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGCCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAGGTTGTCGTTAAGATGTGTTTCAGAGTTTATATGCAAGCTCAATTATTTTCAGCATTTCAAACATGCTCTTTACTAAATGATAGTCTTAGCTGTTTGAAATTTGAAGATCGTATTAATTTTAGAATTTGCATGCTTTTGAATCCATACAGCTGTGTTGCAATGCAACTCCACAAAGTCCTTCTCTAATTGTCCGTGCTGATTTGAAGGTTAAGGAGTGATTATTCATAAGAGTCTTAATATATAACACATGCTTGTGAAGCCTTGGGGTTTACTAGATAGGTTGAATCTTTTCAGACTTAGAAATGGGGAGGTTGGGGGTTCAGTGTAGGTGATAGCCAGACTACAGATAATGAACTGTTGCATTGCTGAGTGGATTTGTTTGTGTTTGTCATTCTAAGTTGGATTCGCTATTTAACTTTCCGGCCGGGAAAGTTAATTTTAGCTGTACGTTGGAATATGGGGTTAGAATCTAAGGGGAAACTTTGTTGCTGGGTGACCTGTGTATTTTTCATGAGGTGTATTGTTGACTGCATGACTTCCCCACCCAGAGTTATCTGTACAAAATTGCATACACATGTTTTATGTGGCTTCAGTGTTTTTTTGGCTATAAGACAATCCACCATACATGTTTTTTTTACTCTCATAATTATAGACACGAATAATTCCCATTTCCGTTTTACTTTATCAAAAAGAGAAAATATCAATGACAATAATAACAATAGACAAGAACTAACCTAACTAATCAAGTACAAGAGTTCTCTGTGTTTAACATAATATTTTCAGTAATGTAGCCCCTATTGTAAATTTCTTACAACACTTGTTCTGAGATTAATACAATACTTTTAACAATTTAAAAAAAAAAAGAATCTTCGATGTTCAATTGGTAGTCTAATGATTAGCTGTAAGATTGTGAGTGCTGAATTTGATCCCAGTTTTAAATATCAATTTGAGCTGTCTTTCAAAATTGCAGACACACAGGCAAAGCAGTAGAGGTCGTCAACCCACAGCATCACTAAATCGC</genome_strand>
        <mrna_strand>CCCGTATCTCTCTCACACACACCTCTCTTCCGCCAACATCGCAACGGTTCGCCGGAGTACTGCGGCGGTGCCACCAACATCTAAAATATTAACTCCGTTTACTTGCCTGCTTTGCTCTAACTAACTGCCAATTCGCCGGATTTTCTAGTCAGTTTGCCGGTGTTTGCTTTGGATTGATCAGCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGT.......................................................................................................GATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAAATGAACAAACCTGATATTCAGCAACTCCGCTTTTGGTGCCAATATTG.................................................................................GATCTTAGTTGCTATGTTGACAATTTGTGAGAGGTTCGGTGATGCTTTTATTTCATG.........................................................................................................................GGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAG................................................................................................GGAACTACATATGTGTATGATGCCTTTTTTAAACCCGTGATTTTAAGGCATGAACCTGAGATTGATAAAAATTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGTCAGACGAGGGTTTTCGACATTTTACAGTACATTGCTTCGCAGTCAAATCCACCTNCCCCCACTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAAAGGCAAAGCAGTAGAAGTCGTCAACCCACAGCATCACTAAATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466979" ref_strand="+" ref_description="SGN-E466979 [cPRO-26-N19]">
      <seq>gttttttcaagggttccaatgtatagtgaagctaagctggcattcgtcatttacttgtggtgccccaaaactaagggaactacatatgtgtatgatgccttttttaaacccgtgattttaaggcatgaacctgagattgataaaaatttgttggagttgaggaccagagcaggagatatgttctttttatactggcagaaagctgctagctatggtcagacgagggttttcgacattttgcagtacattgcttcgcagtcaaatccacctccccccactcaggttttcattaagatgtgtttcagagtttatatgcaagcccaatcattttcagcatttctttactaaatgatagtcttagctgtttgacatttgaagatcttattcattttagagttttgcatgcttatgaatccatacagctgtgttgcgatgcaactccacaaagtccttctctaactgtccgtgctgatttgaaggttaaggagtgattattcatcagactcttaatatataacacatgcttgtgaatactagataggttgaatctttttagacttagcagtggggaagttgggggttcagtgtaggtgatagccagattacagataatgaactgttgcattttctgatggtttgctgtgtggatttgttgtgtttgtcattctaatttggattcgctaattaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="137702" stop="136305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137402" g_stop="137328" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137327" i_stop="137232" i_length="96">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137231" g_stop="136661" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="626" r_length="551" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E466979" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137402" e_stop="137328"/>
          <exon e_start="137231" e_stop="136661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCAAGGGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAGGTATGCAAATATTGAAAAACAAATATTCTGTCTTTGATCGGCTTCAGTTTCATATTAATCTAATTAGTTCATCATCTTATCATAAAATTACTGCAGGGAACTACATACGTCTATGATGCCTTTTTTAAACCTGTGATATTAAGGCATGAACCTGAGATTGATAAAAGTTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGCCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAGGTTGTCGTTAAGATGTGTTTCAGAGTTTATATGCAAGCTCAATTATTTTCAGCATTTCAAACATGCTCTTTACTAAATGATAGTCTTAGCTGTTTGAAATTTGAAGATCGTATTAATTTTAGA-ATTTGCATGCTTTTGAATCCATACAGCTGTGTTGCAATGCAACTCCACAAAGTCCTTCTCTAATTGTCCGTGCTGATTTGAAGGTTAAGGAGTGATTATTCATAAGAGTCTTAATATATAACACATGCTTGTGAAGCCTTGGGGTTTACTAGATAGGTTGAATCTTTTCAGACTTAGAAATGGGGAGGTTGGGGGTTCAGTGTAGGTGATAGCCAGACTACAGATAATGAACTGTTGCATT</genome_strand>
        <mrna_strand>GTTTTTTCAAGGGTTCCAATGTATAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAG................................................................................................GGAACTACATATGTGTATGATGCCTTTTTTAAACCCGTGATTTTAAGGCATGAACCTGAGATTGATAAAAATTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGTCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAGGTTTTCATTAAGATGTGTTTCAGAGTTTATATGCAAGCCCAATCATTTTCAGCATTT----C-T-----TTACTAAATGATAGTCTTAGCTGTTTGACATTTGAAGATCTTATTCATTTTAGAGTTTTGCATGCTTATGAATCCATACAGCTGTGTTGCGATGCAACTCCACAAAGTCCTTCTCTAACTGTCCGTGCTGATTTGAAGGTTAAGGAGTGATTATTCATCAGACTCTTAATATATAACACATGCTTGTGAA-----------TACTAGATAGGTTGAATCTTTTTAGACTTAGCAGTGGGGAAGTTGGGGGTTCAGTGTAGGTGATAGCCAGATTACAGATAATGAACTGTTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443570" ref_strand="+" ref_description="SGN-E443570 [cSTA-38-N4]">
      <seq>ctcttccgccgacatcgcaacggttcgccggagtactgcggcggtgccaccaacatctgaaaaattaactccgtttacttgcctgctttgctttaagtaacggccaattcgccggattttctagtcagtttaccggtgtttgctttggattgatcagcaaaaggaattcaagatgattggatcttttatcaccagagtgcttgtgatggtttttggttatgcttatccagcttatgaatgcttcaaaactgtggaaatgaacaaacctgatattcagcaactccgcttttggtgccaatattggatcttagttgctatgttgacaatttgtgagaggttcggtgatgcttttatttcatgggttccaatgtacagtgaagctaagctggcattcgtcatttacttgtggtgccccaaaactaagggaactacatatgtgtatgatgcctttttttaaacccgtgattttaaggcatgaacctgagattgataaaaatttgttggagttgaggaccagagcaggagatatgttctttttatactggcagaaagctgctagctatggtcagacgagggttttcgacattttacagtacattgcttcgcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="138946" stop="136747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138646" g_stop="138489" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.861"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138488" i_stop="137894" i_length="595">
            <donor d_prob="0.841" d_score="0.96"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137893" g_stop="137853" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="204" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137852" i_stop="137750" i_length="103">
            <donor d_prob="0.638" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137749" g_stop="137651" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="303" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137650" i_stop="137570" i_length="81">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137569" g_stop="137513" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="360" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137512" i_stop="137392" i_length="121">
            <donor d_prob="0.934" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="137391" g_stop="137328" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="424" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="137327" i_stop="137232" i_length="96">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="137231" g_stop="137047" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="610" r_length="186" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E443570" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138646" e_stop="138489"/>
          <exon e_start="137893" e_stop="137853"/>
          <exon e_start="137749" e_stop="137651"/>
          <exon e_start="137569" e_stop="137513"/>
          <exon e_start="137391" e_stop="137328"/>
          <exon e_start="137231" e_stop="137047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTCGCCAACATCGCAACGGTTCGCCGGAGAACTGCGGTGGTGCCACCAACTTCT--AAAA--AACT--GTTTACTTGCCCGCTTTGCTCTAACTAACGGCCAATTCGCCGGATTTTCTAGTCAGTTCGCCGGTGTTTGCTTTGGATTGATCAGCAAAAGGTACTGATCGGTTTGTCACAGATGTTTGTGCTCTTGTTCTGTTTGTAATTTACTATTGAACTTAATTTATTTTTGATTTTATCAGTTTTTGGATCTTATATTTTGTCTTTTATGTTTTTAGATACTTCTGAAGATATACTATTTGTTTGACATTGTTTTAGTTTCAACTTTTTAGGGATTTTTTTTAGTCTTGCTATAAACAATGAGTGATAAAGCAGATGGGAAGAAAAAGATGAAATTGTTTTAGTGTTTTGCTGCATTTTAAAGTCATTTGCAATTTTGATATTCATTTTTATACAACAAAATTGTGAGCTGAGTTTCTATGTAAACAACCACTTTTAAGGAAGGAGTAAAGTTTGCATACATCCGATTTTCAACAGACTCCACTTGTGAGATTACACTGTGTGTGTTGTTGTTGTATCAACTCAAATTGTAAGTTAAATGGATAGCTATATGAAGTAATCTATATCCATTTGGTTTCATTTGTACTCGGTTCCGTTTCAATCATCCTTAAATTAGTTCCCCTGATGCATTATCTCCCAAGTTGTGTTGATTGTAGAGCTTGGTTTAATTAGTGTTATCTTTTTTGTGTCAGGAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGTGTAAATTTCGAACTACCCTTATACAAATTATATAGAGTAGTTAATCGTGGATTTTCTATTTCTTGAGTTTCTAAAGCTTTGATCTTTGGTGTTCTTCATGTAGGATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAGATGAACAAACCAGATATTCAGCAACTCCGCTTTTGGTGCCAATATTGGTATGTTGCTACATTTTGTTAGACCTCGATGTATCTTATTGTGGATCTCCGTTCTAACTACCTCATTCCTCCAATTTTCAGGATCTTAGTTGCTATGTTGACAGTTTGTGAGAGGTTCGGTGATGCTTTTATTTCATGGTAATCATAACGAACTTGTTTGTTCAGATCGTATTTTTTGATTACTCCAACTTGTTATATTTTGAAATATTCATGTTGATGTTAACTTTCTCTTATTTGTGTGATACTTTTTCTTTTCAAGGGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAGGTATGCAAATATTGAAAAACAAATATTCTGTCTTTGATCGGCTTCAGTTTCATATTAATCTAATTAGTTCATCATCTTATCATAAAATTACTGCAGGGAACTACATACGTCTATGATGCC-TTTTTTAAACCTGTGATATTAAGGCATGAACCTGAGATTGATAAAAGTTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGCCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTC</genome_strand>
        <mrna_strand>CTCTTC-CGCCGACATCGCAACGGTTCGCCGGAGTACTGCGGCGGTGCCACCAACATCTGAAAAATTAACTCCGTTTACTTGCCTGCTTTGCTTTAAGTAACGGCCAATTCGCCGGATTTTCTAGTCAGTTTACCGGTGTTTGCTTTGGATTGATCAGCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGT.......................................................................................................GATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAAATGAACAAACCTGATATTCAGCAACTCCGCTTTTGGTGCCAATATTG.................................................................................GATCTTAGTTGCTATGTTGACAATTTGTGAGAGGTTCGGTGATGCTTTTATTTCATG.........................................................................................................................GGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAG................................................................................................GGAACTACATATGTGTATGATGCCTTTTTTTAAACCCGTGATTTTAAGGCATGAACCTGAGATTGATAAAAATTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGTCAGACGAGGGTTTTCGACATTTTACAGTACATTGCTTCGCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462696" ref_strand="+" ref_description="SGN-E462696 [cPRO-12-O2]">
      <seq>ctctctcacacacacctctcttccgccgacatcgcaacggttcgccggagtactgcggcggtgccaccaacatctgaaaaataactccgtttacttgcctgctttgctttaagtaacggccaattcgccggattttctagtcagtttaccggtgtttgctttggattgatcagcaaaaggaattcaagatgattggatcttttatcaccagagtgcttgtgatggtttttggttatgcttatccagcttatgaatgcttcaaaactgtggaaatgaacaaacctgatattcagcaactccgcttttggtgccaatattggatcttagttgctatgttgacaatttgtgagaggttcggtgatgcttttatttcatgggttccaatgtacagtgaagctaagctggcattcgtcatttacttgtggtgccccaaaactaagggaactacatatgtgtatgatgccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="138960" stop="137025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138661" g_stop="138489" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.850"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138488" i_stop="137894" i_length="595">
            <donor d_prob="0.841" d_score="0.96"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137893" g_stop="137853" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="220" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137852" i_stop="137750" i_length="103">
            <donor d_prob="0.638" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137749" g_stop="137651" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="319" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137650" i_stop="137570" i_length="81">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137569" g_stop="137513" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="376" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137512" i_stop="137392" i_length="121">
            <donor d_prob="0.934" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="137391" g_stop="137328" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="440" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="137327" i_stop="137232" i_length="96">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="137231" g_stop="137203" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="469" r_length="29" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E462696" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138661" e_stop="138489"/>
          <exon e_start="137893" e_stop="137853"/>
          <exon e_start="137749" e_stop="137651"/>
          <exon e_start="137569" e_stop="137513"/>
          <exon e_start="137391" e_stop="137328"/>
          <exon e_start="137231" e_stop="137203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTTTCACACACCTCT-TCTCGCCAACATCGCAACGGTTCGCCGGAGAACTGCGGTGGTGCCACCAACTTCT--AAAA-AACT--GTTTACTTGCCCGCTTTGCTCTAACTAACGGCCAATTCGCCGGATTTTCTAGTCAGTTCGCCGGTGTTTGCTTTGGATTGATCAGCAAAAGGTACTGATCGGTTTGTCACAGATGTTTGTGCTCTTGTTCTGTTTGTAATTTACTATTGAACTTAATTTATTTTTGATTTTATCAGTTTTTGGATCTTATATTTTGTCTTTTATGTTTTTAGATACTTCTGAAGATATACTATTTGTTTGACATTGTTTTAGTTTCAACTTTTTAGGGATTTTTTTTAGTCTTGCTATAAACAATGAGTGATAAAGCAGATGGGAAGAAAAAGATGAAATTGTTTTAGTGTTTTGCTGCATTTTAAAGTCATTTGCAATTTTGATATTCATTTTTATACAACAAAATTGTGAGCTGAGTTTCTATGTAAACAACCACTTTTAAGGAAGGAGTAAAGTTTGCATACATCCGATTTTCAACAGACTCCACTTGTGAGATTACACTGTGTGTGTTGTTGTTGTATCAACTCAAATTGTAAGTTAAATGGATAGCTATATGAAGTAATCTATATCCATTTGGTTTCATTTGTACTCGGTTCCGTTTCAATCATCCTTAAATTAGTTCCCCTGATGCATTATCTCCCAAGTTGTGTTGATTGTAGAGCTTGGTTTAATTAGTGTTATCTTTTTTGTGTCAGGAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGTGTAAATTTCGAACTACCCTTATACAAATTATATAGAGTAGTTAATCGTGGATTTTCTATTTCTTGAGTTTCTAAAGCTTTGATCTTTGGTGTTCTTCATGTAGGATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAGATGAACAAACCAGATATTCAGCAACTCCGCTTTTGGTGCCAATATTGGTATGTTGCTACATTTTGTTAGACCTCGATGTATCTTATTGTGGATCTCCGTTCTAACTACCTCATTCCTCCAATTTTCAGGATCTTAGTTGCTATGTTGACAGTTTGTGAGAGGTTCGGTGATGCTTTTATTTCATGGTAATCATAACGAACTTGTTTGTTCAGATCGTATTTTTTGATTACTCCAACTTGTTATATTTTGAAATATTCATGTTGATGTTAACTTTCTCTTATTTGTGTGATACTTTTTCTTTTCAAGGGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAGGTATGCAAATATTGAAAAACAAATATTCTGTCTTTGATCGGCTTCAGTTTCATATTAATCTAATTAGTTCATCATCTTATCATAAAATTACTGCAGGGAACTACATACGTCTATGATGCCTTTTT</genome_strand>
        <mrna_strand>CTCTCTCACACACACCTCTCTTCCGCCGACATCGCAACGGTTCGCCGGAGTACTGCGGCGGTGCCACCAACATCTGAAAAATAACTCCGTTTACTTGCCTGCTTTGCTTTAAGTAACGGCCAATTCGCCGGATTTTCTAGTCAGTTTACCGGTGTTTGCTTTGGATTGATCAGCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGT.......................................................................................................GATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAAATGAACAAACCTGATATTCAGCAACTCCGCTTTTGGTGCCAATATTG.................................................................................GATCTTAGTTGCTATGTTGACAATTTGTGAGAGGTTCGGTGATGCTTTTATTTCATG.........................................................................................................................GGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAG................................................................................................GGAACTACATATGTGTATGATGCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265774" ref_strand="+" ref_description="SGN-E265774 [cLEI-11-D24]">
      <seq>ctcactcttttcaatttcagagaagctgcaatggagagcgctcttctctctgcttcccgcttcactactgctctgcacaaagcagaaagagaagtagtaggtggacctgtggctgtgaggaaattacagagctcattctatggcaaagagattaatagtcatactcttttcactaaaaacttcaaaaaaatcaatctcactatcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgatccagattaccgaattcctattgtccttctagggttatctggtggtttattttatgtggaaaatctacccgcagcagatcctattggtcttcttggattactcctgttattccagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcaaggagtcaggtgaaaatgttttcgtgggtggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="141646" stop="144631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141946" g_stop="142024" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142025" i_stop="142115" i_length="91">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142116" g_stop="142249" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="213" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142250" i_stop="142659" i_length="410">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142660" g_stop="142732" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="286" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="142733" i_stop="143299" i_length="567">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143300" g_stop="143382" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="369" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143383" i_stop="144116" i_length="734">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144117" g_stop="144155" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="408" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144156" i_stop="144271" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144272" g_stop="144331" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="468" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E265774" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141946" e_stop="142024"/>
          <exon e_start="142116" e_stop="142249"/>
          <exon e_start="142660" e_stop="142732"/>
          <exon e_start="143300" e_stop="143382"/>
          <exon e_start="144117" e_stop="144155"/>
          <exon e_start="144272" e_stop="144331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCTTTTCAATTTCAGAGAAACTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAG</genome_strand>
        <mrna_strand>CTCACTCTTTTCAATTTCAGAGAAGCTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACA...........................................................................................AAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGATCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCAAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730550" ref_strand="+" ref_description="SGN-E730550 [LA24BH05]">
      <seq>ataatctgcaatggagagcgctcttctatctgcttcccgcttcactactgctctgcacaaagcagaaagagaagtagtaggtggacctgtggctgtgaggaaattacagagctcattctatggcaaagagattaatagtcatactcttttcactaaaaacttcaaaaaaatcaatctcactatcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgacccagattaccgaattcctgttgtccttctagggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattactcctgttattacagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcgaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaactgtacgatgctatggtggagagatgtggcccttcaaaaactagcggaccaaagtagtgcaacatgagctccagggagaagacgaatatgagccaggcaaaccatacaatcagaatttgtggcaaaggtatgaagctcaacgaggttaaggaactcgtcagttgagttacaagatgtggtttaatcaattaatgtatattacctttcatgtttttacgtgtctgtaaaatcacaaagataaactatcaatctgagtatgtgtcacaactcacaaaatcatgtattatatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="141668" stop="145205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141966" g_stop="142024" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142025" i_stop="142115" i_length="91">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142116" g_stop="142249" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="193" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142250" i_stop="142659" i_length="410">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142660" g_stop="142732" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="266" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="142733" i_stop="143299" i_length="567">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143300" g_stop="143382" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="349" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143383" i_stop="144116" i_length="734">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144117" g_stop="144155" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="388" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144156" i_stop="144271" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144272" g_stop="144342" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="459" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="144410" g_stop="144524" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="574" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="144525" i_stop="144600" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="144601" g_stop="144905" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="879" r_length="305" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E730550" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141966" e_stop="142024"/>
          <exon e_start="142116" e_stop="142249"/>
          <exon e_start="142660" e_stop="142732"/>
          <exon e_start="143300" e_stop="143382"/>
          <exon e_start="144117" e_stop="144155"/>
          <exon e_start="144272" e_stop="144342"/>
          <exon e_start="144410" e_stop="144524"/>
          <exon e_start="144601" e_stop="144905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTAT</genome_strand>
        <mrna_strand>ATAATCTGCAATGGAGAGCGCTCTTCTATCTGCTTCCCGCTTCACTACTGCTCTGCACA...........................................................................................AAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGACCCAGATTACCGAATTCCTGTTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGGCAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTTACAAGATGTGGTTTAATCAATTAATGTATATTACCTTTCATGTTTTTACGTGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733988" ref_strand="+" ref_description="SGN-E733988 [LB11BH12]">
      <seq>agaaactgcaatggagagcgctcttctctctgcttcccgcttcactactgctctgcacaaagcagaaagagaagtagtaggtggacctgtggctgtgaggaaattacagagctcattctatggcaaagagattaatagtcatactcttttcactaaaaacttcaaaaaaatcaatctcactatcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgatccagattaccgaattcctattgtccttctagggttatctggtggtttattttatgtggaaaatctacccgcagcagttcctattggtcttcttggattactcctgttattccagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcgaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaggcaactgtacgatgctatggtggagagatgtggcccttcaaaaactagcggaccaaagtagtgcaacatgagctccagggagaagacgaatatgagccagacaaaccatacaatcagaatttgtggcaaaggtatgaagctcaacgaggttaaggaactcgtcagttgagtcacaagatgtggtttcatcaattaatgtatattccctttcatgtttttacacgtctgtaaaatcacaaagataaactatcaatctgagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="141666" stop="145171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141966" g_stop="142024" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142025" i_stop="142115" i_length="91">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142116" g_stop="142249" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="193" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142250" i_stop="142659" i_length="410">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142660" g_stop="142732" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="266" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="142733" i_stop="143299" i_length="567">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143300" g_stop="143382" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="349" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143383" i_stop="144116" i_length="734">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144117" g_stop="144155" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="388" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144156" i_stop="144271" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144272" g_stop="144342" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="459" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="144410" g_stop="144524" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="574" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="144525" i_stop="144600" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="144601" g_stop="144871" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="845" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E733988" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141966" e_stop="142024"/>
          <exon e_start="142116" e_stop="142249"/>
          <exon e_start="142660" e_stop="142732"/>
          <exon e_start="143300" e_stop="143382"/>
          <exon e_start="144117" e_stop="144155"/>
          <exon e_start="144272" e_stop="144342"/>
          <exon e_start="144410" e_stop="144524"/>
          <exon e_start="144601" e_stop="144871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATG</genome_strand>
        <mrna_strand>AGAAACTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACA...........................................................................................AAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728216" ref_strand="+" ref_description="SGN-E728216 [LA17AC12]">
      <seq>acactgcaatggagagcgctcttctatctgcttcccgcttcactactgctctgcacaaagcagaaagagaagtagtaggtggacctgtggctgtgaggaaattacagagctcattctatggcaaagagattaatagtcatactcttttcactaaaaacttcaaaaaaatcaatctcactatcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgacccagattaccgaattcctgttgtccttctagggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattactcctgttattacagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcgaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaactgtacgatgctatggtggagagatgtggcccttcaaaaactagcggaccaaagtagtgcaacatgagctccagggagaagacgaatatgagccaggcaaaccatacaatcagaatttgtggcaaaggtatgaagctcaacgaggttaaggaactcgtcagttgagttacaagatgtggtttaatcaattaatgtatattacctttcatgtttttacgtgtctgtaaaatcacaaagataaactatcaatctgagtatgtgtcacaactcacaaaatcatgtattatatgtatcaccattactgtatgaaaggcggntactggatgcaaactatatgtattcacatttggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="141670" stop="145265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141968" g_stop="142024" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142025" i_stop="142115" i_length="91">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142116" g_stop="142249" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="191" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142250" i_stop="142659" i_length="410">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142660" g_stop="142732" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="264" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="142733" i_stop="143299" i_length="567">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143300" g_stop="143382" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="347" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143383" i_stop="144116" i_length="734">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144117" g_stop="144155" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="386" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144156" i_stop="144271" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144272" g_stop="144342" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="457" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="144410" g_stop="144524" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="572" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="144525" i_stop="144600" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="144601" g_stop="144965" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="937" r_length="365" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E728216" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>937</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141968" e_stop="142024"/>
          <exon e_start="142116" e_stop="142249"/>
          <exon e_start="142660" e_stop="142732"/>
          <exon e_start="143300" e_stop="143382"/>
          <exon e_start="144117" e_stop="144155"/>
          <exon e_start="144272" e_stop="144342"/>
          <exon e_start="144410" e_stop="144524"/>
          <exon e_start="144601" e_stop="144965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAAT</genome_strand>
        <mrna_strand>ACACTGCAATGGAGAGCGCTCTTCTATCTGCTTCCCGCTTCACTACTGCTCTGCACA...........................................................................................AAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGACCCAGATTACCGAATTCCTGTTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGGCAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTTACAAGATGTGGTTTAATCAATTAATGTATATTACCTTTCATGTTTTTACGTGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGNTACTGGATGCAAACTATATGTATTCACATTTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433777" ref_strand="+" ref_description="SGN-E433777 [STM-59-A13]">
      <seq>ctgcaatggagagcgctcttctctctgcttcccgcttcactactgctctgcacatagcagaaagagaagtagtaggtgggcctgtggctgtgagaaaattacagagctcattctatggcaaagagattaatagtcatgctcttttcactagaaacttcaaaagaatcaatctcactgtcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgacccagattaccgaattcctattgtccttctagggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattactcctgttattccagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcgaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaattgtatgatgctatggtggagagatgtggcccttcaaaaactagcggaccgaagtagtgcagcataagctccagggagaagacgaatatgagccagacaaaccatatgatcagaatttgtggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="141671" stop="145035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141971" g_stop="142024" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142025" i_stop="142115" i_length="91">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142116" g_stop="142249" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="188" r_length="134" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142250" i_stop="142659" i_length="410">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142660" g_stop="142732" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="261" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="142733" i_stop="143299" i_length="567">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143300" g_stop="143382" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="344" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143383" i_stop="144116" i_length="734">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144117" g_stop="144155" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="383" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144156" i_stop="144271" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144272" g_stop="144342" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="454" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="144410" g_stop="144524" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="569" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="144525" i_stop="144600" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="144601" g_stop="144736" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="705" r_length="136" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E433777" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141971" e_stop="142024"/>
          <exon e_start="142116" e_stop="142249"/>
          <exon e_start="142660" e_stop="142732"/>
          <exon e_start="143300" e_stop="143382"/>
          <exon e_start="144117" e_stop="144155"/>
          <exon e_start="144272" e_stop="144342"/>
          <exon e_start="144410" e_stop="144524"/>
          <exon e_start="144601" e_stop="144736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCA</genome_strand>
        <mrna_strand>CTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACA...........................................................................................TAGCAGAAAGAGAAGTAGTAGGTGGGCCTGTGGCTGTGAGAAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATGCTCTTTTCACTAGAAACTTCAAAAGAATCAATCTCACTGTCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGACCCAGATTACCGAATTCCTATTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAATTGTATGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCGAAGTAGTGCAGCATAAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATATGATCAGAATTTGTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404195" ref_strand="+" ref_description="SGN-E404195 [PPC-12-P2]">
      <seq>ctgcaatggagagcgctcttctctctgcttcccgcttcactactgctctgcacatagcagaaagagaagtagtaggtgggcctgtggctgtgagaaaattacagagctcattctatggcaaagagattaatagtcatgctcttttcactagaaacttcaaaagaatcaatctcactgtcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgacccagattaccgaattcctattgtccttctagggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattactcctggtattccagacaacaagagtgagatttgtctttgatgatgaagctctggaagtgaaagttggggaaccactccaggagtcaagtgaaaatggtttcctgggtggaaagaaccgctggaaatattcttcatttgtgaactgggaactatggtggccaaactttccgaatttggtttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="141671" stop="144769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141971" g_stop="142024" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142025" i_stop="142115" i_length="91">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142116" g_stop="142249" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="188" r_length="134" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142250" i_stop="142659" i_length="410">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142660" g_stop="142732" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="261" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="142733" i_stop="143299" i_length="567">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143300" g_stop="143382" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="344" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143383" i_stop="144116" i_length="734">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144117" g_stop="144155" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="383" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144156" i_stop="144271" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144272" g_stop="144342" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="454" r_length="71" r_score="0.901"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.812" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="144410" g_stop="144469" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="514" r_length="60" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E404195" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141971" e_stop="142024"/>
          <exon e_start="142116" e_stop="142249"/>
          <exon e_start="142660" e_stop="142732"/>
          <exon e_start="143300" e_stop="143382"/>
          <exon e_start="144117" e_stop="144155"/>
          <exon e_start="144272" e_stop="144342"/>
          <exon e_start="144410" e_stop="144469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTT</genome_strand>
        <mrna_strand>CTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACA...........................................................................................TAGCAGAAAGAGAAGTAGTAGGTGGGCCTGTGGCTGTGAGAAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATGCTCTTTTCACTAGAAACTTCAAAAGAATCAATCTCACTGTCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGACCCAGATTACCGAATTCCTATTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGGTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAAGCTCTG....................................................................................................................GAAGTGAAAGTTGGGGAACCACTCCAGGAGTCAAGTGAAAATGGTTTCCTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAACTATGGTGGCCAAACTTTCCGAATTTGGTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546249" ref_strand="+" ref_description="SGN-E546249 [TUS-69-I7]">
      <seq>gcgctcttctctctgcttcccgcttcactactgctctgcacagttgagcaaaatttctgtaaaactagactttgttaagcttatcttaaaattttcttgtattgtaaactaatttttgttttgtatttatcagaagcagaaagagaagtagtaggtggacctgtggctgtgaggaaattacagagctcattctatggcaaagagattaatggtcatggtcttttcactagaaacttcaaaaaaatcaatctcactatcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgacccagattaccgaattcctgttgtccttctagggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattactcctgttattccagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcaaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagttatggtggccaaactttccgattttggtttatttttaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttacggggagcaactgtacgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="141683" stop="144824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141983" g_stop="142249" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142250" i_stop="142659" i_length="410">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142660" g_stop="142732" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="340" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142733" i_stop="143299" i_length="567">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143300" g_stop="143382" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="423" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="143383" i_stop="144116" i_length="734">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144117" g_stop="144155" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="462" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="144156" i_stop="144271" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144272" g_stop="144342" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="533" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67">
            <donor d_prob="0.908" d_score="0.98"/>
            <acceptor a_prob="0.812" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144410" g_stop="144524" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="648" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144525" i_stop="144600" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="144601" g_stop="144623" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="670" r_length="22" r_score="0.870"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E546249" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141983" e_stop="142249"/>
          <exon e_start="142660" e_stop="142732"/>
          <exon e_start="143300" e_stop="143382"/>
          <exon e_start="144117" e_stop="144155"/>
          <exon e_start="144272" e_stop="144342"/>
          <exon e_start="144410" e_stop="144524"/>
          <exon e_start="144601" e_stop="144623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGC</genome_strand>
        <mrna_strand>GCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAACTAGACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATGGTCATGGTCTTTTCACTAGAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGACCCAGATTACCGAATTCCTGTTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCAAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGTTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTTAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................-ACGGGGAGCAACTGTACGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358628" ref_strand="+" ref_description="SGN-E358628 [cLHT-22-I19]">
      <seq>cgctcttctctctgcttcccgcttcactactgctctgcacagttgagcaaaatttctgtaaaactagactttgttaagcttatcttaaaattttcttgtattgtaaactaatttttgttttgtatttatcagaagcagaaagagaagtagtaggtggacctgtggctgtgaggaaattacagagctcattctatggcaaagagattaatggtcatggtcttttcactagaaacttcaaaaaaatcaatctcactatcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgacccagattaccgaattcctgttgtccttctaaggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattactcctgttattccagacaacaagagtgagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="141684" stop="144434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141984" g_stop="142249" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142250" i_stop="142659" i_length="410">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142660" g_stop="142732" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="339" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142733" i_stop="143299" i_length="567">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143300" g_stop="143382" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="422" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="143383" i_stop="144116" i_length="734">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144117" g_stop="144134" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="440" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E358628" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141984" e_stop="142249"/>
          <exon e_start="142660" e_stop="142732"/>
          <exon e_start="143300" e_stop="143382"/>
          <exon e_start="144117" e_stop="144134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTT</genome_strand>
        <mrna_strand>CGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAACTAGACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATGGTCATGGTCTTTTCACTAGAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGACCCAGATTACCGAATTCCTGTTGTCCTTCTAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585414" ref_strand="+" ref_description="SGN-E585414 [67874]">
      <seq>gctcttctctctgcttcccgcttcactactgctttgcacaaagcagaaagagaagtagttggtgggcctgtggctgtgaggaaattacagagctcattctatggcaaagagatcaatagtcatgctcttttcactagaaacttcaaaaaaatcaatctcactgtcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgacccagattaccgaattcctattgtccttctagggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattgctcctgttattccagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggagagcagctcgaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaacagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaactgtatgatgctatggtggagagatgtggcccttcaaaaactagcggaccaaagtagtgcagcatgagctccagggagaagacgaatatgagccagacaaagcatatgatcagaatttgtggcaaagttatgaaggaagctcaaccgaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="141685" stop="145047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141985" g_stop="142024" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142025" i_stop="142115" i_length="91">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142116" g_stop="142249" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="174" r_length="134" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142250" i_stop="142659" i_length="410">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142660" g_stop="142732" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="247" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="142733" i_stop="143299" i_length="567">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143300" g_stop="143382" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="330" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143383" i_stop="144116" i_length="734">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144117" g_stop="144155" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="369" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144156" i_stop="144271" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144272" g_stop="144342" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="440" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="144410" g_stop="144524" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="556" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="144525" i_stop="144600" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="144601" g_stop="144746" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="702" r_length="146" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E585414" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141985" e_stop="142024"/>
          <exon e_start="142116" e_stop="142249"/>
          <exon e_start="142660" e_stop="142732"/>
          <exon e_start="143300" e_stop="143382"/>
          <exon e_start="144117" e_stop="144155"/>
          <exon e_start="144272" e_stop="144342"/>
          <exon e_start="144410" e_stop="144524"/>
          <exon e_start="144601" e_stop="144746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAA-AGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAA</genome_strand>
        <mrna_strand>GCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTTTGCACA...........................................................................................AAGCAGAAAGAGAAGTAGTTGGTGGGCCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATCAATAGTCATGCTCTTTTCACTAGAAACTTCAAAAAAATCAATCTCACTGTCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGACCCAGATTACCGAATTCCTATTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTGCTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGAGAGCAGCTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAACAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAACTGTATGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAGCATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAAGCATATGATCAGAATTTGTGGCAAAGTTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316601" ref_strand="+" ref_description="SGN-E316601 [cTOA-25-J20]">
      <seq>ctcttctctctgcttcccgcttcactactgctctgcacaaagcagaaagagaagtagtaggtggacctgtggctgtgaggaattacagagctcattctatggcaaagagattaatagtcatactcttnttcactnaaaaacttcaaaaaaatcaatctcactatcacctcagtgatgcggaagaaactgataaagaaggagactggttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="141686" stop="142995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141986" g_stop="142024" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142025" i_stop="142115" i_length="91">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142116" g_stop="142249" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="174" r_length="135" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142250" i_stop="142659" i_length="410">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142660" g_stop="142695" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="211" r_length="37" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E316601" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>209</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141986" e_stop="142024"/>
          <exon e_start="142116" e_stop="142249"/>
          <exon e_start="142660" e_stop="142695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTT-TTCACT-AAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACT-GTTGTT</genome_strand>
        <mrna_strand>CTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACA...........................................................................................AAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGG-AATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTNTTCACTNAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583331" ref_strand="+" ref_description="SGN-E583331 [9152]">
      <seq>cttcactactgctttgcacaaagcagaaagagaagtagttggtgggcctgtggctgtgaggaaattacagagctcattctatggcaaagagatcaatagtcatgctcttttcactagaaacttcaaaaaaatcaatctcactgtcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgacccagattaccgaattcctattgtccttctagggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattgctcctgttattccagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggagagcagctcgaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="141804" stop="144808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142005" g_stop="142024" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142025" i_stop="142115" i_length="91">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142116" g_stop="142249" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="154" r_length="134" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142250" i_stop="142659" i_length="410">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142660" g_stop="142732" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="227" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="142733" i_stop="143299" i_length="567">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143300" g_stop="143382" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="310" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143383" i_stop="144116" i_length="734">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144117" g_stop="144155" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="349" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144156" i_stop="144271" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144272" g_stop="144342" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="420" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="144410" g_stop="144508" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="519" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E583331" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E583331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142005" e_stop="142024"/>
          <exon e_start="142116" e_stop="142249"/>
          <exon e_start="142660" e_stop="142732"/>
          <exon e_start="143300" e_stop="143382"/>
          <exon e_start="144117" e_stop="144155"/>
          <exon e_start="144272" e_stop="144342"/>
          <exon e_start="144410" e_stop="144508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTT</genome_strand>
        <mrna_strand>CTTCACTACTGCTTTGCACA...........................................................................................AAGCAGAAAGAGAAGTAGTTGGTGGGCCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATCAATAGTCATGCTCTTTTCACTAGAAACTTCAAAAAAATCAATCTCACTGTCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGACCCAGATTACCGAATTCCTATTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTGCTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGAGAGCAGCTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295631" ref_strand="+" ref_description="SGN-E295631 [cLET-25-O3]">
      <seq>ggaaattacagagctcattctatggcaaagagattaatagtcatactcttttcactaaaaacttcaaaaaaatcaatctcactatcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgatccagattaccgaattcctattgtccttctagggttatctggtggtttattttatgtggaaaatctacccgcagcagttcctattggtcttcttggattactcctgttattccagacaacaagagtgagatttgtctttgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="141855" stop="144447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142155" g_stop="142249" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142250" i_stop="142659" i_length="410">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142660" g_stop="142732" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="168" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142733" i_stop="143299" i_length="567">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143300" g_stop="143382" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="251" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="143383" i_stop="144116" i_length="734">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144117" g_stop="144147" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="282" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E295631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142155" e_stop="142249"/>
          <exon e_start="142660" e_stop="142732"/>
          <exon e_start="143300" e_stop="143382"/>
          <exon e_start="144117" e_stop="144147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATG</genome_strand>
        <mrna_strand>GGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433778" ref_strand="-" ref_description="SGN-E433778 [STM-59-A13]">
      <seq>agtgatgcggaagaaactgataaagaaggagactgttgttcctgacccagattaccgaattcctattgtccttctagggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattactcctgttattccagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcgaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaattgtatgatgctatggtggagagatgtggcccttcaaaaactagcggaccgaagtagtgcagcataagctccagggagaagacgaatatgagccagacaaaccatatgatcagaatttgtggcgaaggtatgaagctcaacgaggttaaggaactcgttattgagttacaagatgtggtttgatcaattaatgtatattccctttcatgtttttacgtttctgtaaaatcacaaagataaaataatgctcattcttagtttgtgtcacaaattcatgtatttatatagcacttttacatatgaaggcgcggtaactggatgcaaactttctgtactctagctcatatattatatcatacattttacagttccatttaaaaaaagtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="142359" stop="145314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142423" g_stop="142426" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142427" i_stop="142659" i_length="233">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142660" g_stop="142732" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="77" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142733" i_stop="143299" i_length="567">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143300" g_stop="143382" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="160" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="143383" i_stop="144116" i_length="734">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144117" g_stop="144155" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="199" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="144156" i_stop="144271" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144272" g_stop="144342" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="270" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144410" g_stop="144524" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="385" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144525" i_stop="144600" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="144601" g_stop="144944" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="724" r_length="339" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E433778" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433778" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="142423" e_stop="142426"/>
          <exon e_start="142660" e_stop="142732"/>
          <exon e_start="143300" e_stop="143382"/>
          <exon e_start="144117" e_stop="144155"/>
          <exon e_start="144272" e_stop="144342"/>
          <exon e_start="144410" e_stop="144524"/>
          <exon e_start="144601" e_stop="144944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAG-GCGGTAACTGGATGCAAACT</genome_strand>
        <mrna_strand>AGTG.........................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGACCCAGATTACCGAATTCCTATTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAATTGTATGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCGAAGTAGTGCAGCATAAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATATGATCAGAATTTGTGGCGAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTTA-TTGAGTTACAAGATGTGGTTTGATCAATTAATGTATATTCCCTTTCATGTTTTTACGTTTCTGTAAAATCACAAAGATAAA--ATAATGCTCATTCTTAGT-TTGTGTCACAAATTCATGTATT-TATATAGCACTTTTAC-ATATGAAGGCGCGGTAACTGGATGCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325856" ref_strand="+" ref_description="SGN-E325856 [cTOC-12-H12]">
      <seq>actgttgttcctgatccagattaccgaagtgctattgtccttctagggttatctggtggtttattttatgtggaaaatctacccgcagcagttcctattggtcttcttggattactcctgttattccagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcgaggagtcaggtgaaaatgttttcgcgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaggcaactgtacgatgctatggtggagagatgtggcccttcaaaaactagcggaccaaagtagtgcaacatgagctccagggagaagacgaatatgagccagacaaaccatacaatcagaatttgtggcaaaggattgaaactcaacgaggttaaagaactcgtcagttgagtcacaagatgtggtttcatcaattaatgtatattccctttcatgtttttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="142387" stop="145130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142687" g_stop="142732" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142733" i_stop="143299" i_length="567">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143300" g_stop="143382" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="129" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="143383" i_stop="144116" i_length="734">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144117" g_stop="144155" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="168" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144156" i_stop="144271" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144272" g_stop="144342" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="239" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67">
            <donor d_prob="0.908" d_score="0.98"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144410" g_stop="144524" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="354" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144525" i_stop="144600" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144601" g_stop="144830" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="584" r_length="230" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E325856" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142687" e_stop="142732"/>
          <exon e_start="143300" e_stop="143382"/>
          <exon e_start="144117" e_stop="144155"/>
          <exon e_start="144272" e_stop="144342"/>
          <exon e_start="144410" e_stop="144524"/>
          <exon e_start="144601" e_stop="144830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACA</genome_strand>
        <mrna_strand>ACTGTTGTTCCTGATCCAGATTACCGAAGTGCTATTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGCGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGATTGAAACTCAACGAGGTTAAAGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546290" ref_strand="+" ref_description="SGN-E546290 [TUS-69-J7](-)">
      <seq>cctgacccagattaccgaattcctgttgtccttctagggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattactcctgttattccagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcaaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagttatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaactgtacgatgctatggtggagagatgtggcccttcaaaaactagcggaccaaagtagtgcaacatgagctccagggagaagacgaatatgagccagagaaaccatacaatcagaatttgtggcaaaggtatgaagctcaacaaggttaaggaactcgtcagttgagttacaagatgtggtttaatcaattaatgtatattccctttcatgtttttacacgtctgtaaaatcacaaagataaactaatgttcaatctgagtttgtgtcacaactcacaaaataatgtattatatgtatcaccattactgtatgaaaggcggtaactggatgcaaactgtatgtattcacatttgggatgtgttacaagttctagctcatatattatatcatacattttacagttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="142396" stop="145322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142696" g_stop="142732" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142733" i_stop="143299" i_length="567">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143300" g_stop="143382" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="120" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="143383" i_stop="144116" i_length="734">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144117" g_stop="144155" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="159" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144156" i_stop="144271" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144272" g_stop="144342" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="230" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67">
            <donor d_prob="0.908" d_score="0.98"/>
            <acceptor a_prob="0.812" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144410" g_stop="144524" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="345" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144525" i_stop="144600" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144601" g_stop="145025" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="774" r_length="429" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E546290" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142696" e_stop="142732"/>
          <exon e_start="143300" e_stop="143382"/>
          <exon e_start="144117" e_stop="144155"/>
          <exon e_start="144272" e_stop="144342"/>
          <exon e_start="144410" e_stop="144524"/>
          <exon e_start="144601" e_stop="145025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACT-A---TCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAAATTCTAGCTCATATATTGTATCATACATTTTACAGTTCTAACATATAATTT</genome_strand>
        <mrna_strand>CCTGACCCAGATTACCGAATTCCTGTTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCAAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGTTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGAGAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACAAGGTTAAGGAACTCGTCAGTTGAGTTACAAGATGTGGTTTAATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTAATGTTCAATCTGAGTTTGTGTCACAACTCACAAAATAATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTGTATGTATTCACATTTGGGATGTGTTACAAGTTCTAGCTCATATATTATATCATACATTTTACAGTTCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434698" ref_strand="+" ref_description="SGN-E434698 [STM-60-G12]">
      <seq>ggagcttcttctattgcaccggatctagtaacaaatcatctgttcattctgcttattatcttaatttccttgatcttgttcattcatttagcatctatcaggctggcattccttattgattcacatcgtttttcccttgcagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcgaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaattgtatgatgctatggtggagagatgtggcccttcaaaaactagcggaccgaagtagtgcagcataagctccagggagaagacgaatatgagccagacaaaccatatgatcagaatttgtggcgaaggtatgaagctcaacgaggttaaggaactcgttattgagttacaagatgtggtttgatcaattaatgtatattccctttcatgtttttacgtttctgtaaaatcacaaagataaaataatgctcattcttagtttgtgtcacaaattcatgtatttatatagcacttttacatatgaaggcgcggtaactggatgcaaactttctgtactctagctcatatattatatcatacattttacagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="143675" stop="145311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143975" g_stop="144155" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144156" i_stop="144271" i_length="116">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144272" g_stop="144342" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="252" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144410" g_stop="144524" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="367" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144525" i_stop="144600" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144601" g_stop="144944" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="706" r_length="339" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E434698" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143975" e_stop="144155"/>
          <exon e_start="144272" e_stop="144342"/>
          <exon e_start="144410" e_stop="144524"/>
          <exon e_start="144601" e_stop="144944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAG-GCGGTAACTGGATGCAAACT</genome_strand>
        <mrna_strand>GGAGCTTCTTCTATTGCACCGGATCTAGTAACAAATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTTGTTCATTCATTTAGCATCTATCAGGCTGGCATTCCTTATTGATTCACATCGTTTTTCCCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAATTGTATGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCGAAGTAGTGCAGCATAAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATATGATCAGAATTTGTGGCGAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTTA-TTGAGTTACAAGATGTGGTTTGATCAATTAATGTATATTCCCTTTCATGTTTTTACGTTTCTGTAAAATCACAAAGATAAA--ATAATGCTCATTCTTAGT-TTGTGTCACAAATTCATGTATT-TATATAGCACTTTTAC-ATATGAAGGCGCGGTAACTGGATGCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409719" ref_strand="+" ref_description="SGN-E409719 [PPI-14-L6]">
      <seq>ggagcttcttctattgcaccggatctagtaacaaatcatctgttcattctgcttattatcttaatttccttgatcttgttcattcatttagcatctatcaggctggcattccttattgattcacatcgtttttcccttgcagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcgaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaattgtatgatgctatggtggagagatgtggcccttcaaaaactagcggaccgaagtagtgcagcataagctccagggagaagacgaatatgagccagacaaaccatatgatcagaatttgtggcgaaggtatgaaagctcacgaggttaaggaactcgttattgagttacaagatgtggtttgatcaattaatgtatattccctttcatgtttttacgtttctgtaaaatcacaaagataaataatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="143675" stop="145157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143975" g_stop="144155" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144156" i_stop="144271" i_length="116">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144272" g_stop="144342" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="252" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144410" g_stop="144524" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="367" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144525" i_stop="144600" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144601" g_stop="144863" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="628" r_length="261" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E409719" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143975" e_stop="144155"/>
          <exon e_start="144272" e_stop="144342"/>
          <exon e_start="144410" e_stop="144524"/>
          <exon e_start="144601" e_stop="144863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATG-AAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATC</genome_strand>
        <mrna_strand>GGAGCTTCTTCTATTGCACCGGATCTAGTAACAAATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTTGTTCATTCATTTAGCATCTATCAGGCTGGCATTCCTTATTGATTCACATCGTTTTTCCCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAATTGTATGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCGAAGTAGTGCAGCATAAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATATGATCAGAATTTGTGGCGAAGGTATGAAAGCTC-ACGAGGTTAAGGAACTCGTTA-TTGAGTTACAAGATGTGGTTTGATCAATTAATGTATATTCCCTTTCATGTTTTTACGTTTCTGTAAAATCACAAAGATAAA-TAATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711292" ref_strand="+" ref_description="SGN-E711292 [FB01CD06]">
      <seq>tgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaactgtacgatgctatggtggagagatgtggcccttcaaaaactagcggaccaaagtagtgcaacatgagctccagggagaagacgaatatgagccaggcaaaccatacaatcagaatttgtggcaaaggtatgaagctcaacgaggttaaggaactcgtcagttgagttacaagatgtggtttaatcattaatgtatattacctttcatgtttttacgtgtctgtaaaatcacaaagataaactatcaatctgagtatgtgtcacaactcacaaaatcatgtattatatgtatcaccattactgtatgaaaggcggtaactggatgcaaactatatgtattcacatttggaatgtgttacaagttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="144007" stop="145277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144307" g_stop="144342" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144410" g_stop="144524" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="151" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144525" i_stop="144600" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144601" g_stop="144974" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="524" r_length="373" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="543"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E711292" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144307" e_stop="144342"/>
          <exon e_start="144410" e_stop="144524"/>
          <exon e_start="144601" e_stop="144974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAA</genome_strand>
        <mrna_strand>TGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGGCAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTTACAAGATGTGGTTTAATC-ATTAATGTATATTACCTTTCATGTTTTTACGTGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711311" ref_strand="+" ref_description="SGN-E711311 [FB01CF06]">
      <seq>tgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaactgtacgatgctatggtggagagatgtggcccttcaaaaactagcggaccaaagtagtgcaacatgagctccagggagaagacgaatatgagccaggcaaaccatacaatcagaatttgtggcaaaggtatgaagctcaacgaggttaaggaactcgtcagttgagttacaagatgtggtttaatcattaatgtatattacctttcatgtttttacgtgtctgtaaaatcacaaagataaactatcaatctgagtatgtgtcacaactcacaaaatcatgtattatatgtatcaccattactgtatgaaaggcggtaactggatgcaaactatatgtattcacatttggaatgtgttacaagttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="144007" stop="145277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144307" g_stop="144342" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144410" g_stop="144524" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="151" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144525" i_stop="144600" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144601" g_stop="144974" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="524" r_length="373" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="543"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E711311" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144307" e_stop="144342"/>
          <exon e_start="144410" e_stop="144524"/>
          <exon e_start="144601" e_stop="144974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAA</genome_strand>
        <mrna_strand>TGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGGCAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTTACAAGATGTGGTTTAATC-ATTAATGTATATTACCTTTCATGTTTTTACGTGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733019" ref_strand="+" ref_description="SGN-E733019 [LB03DA08]">
      <seq>cttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaactgtacgatgctatggtggagagatgtggcccttcaaaaactagcggaccaaagtagtgcaacatgagctccagggagaagacgaatatgagccaggcaaaccatacaatcagaatttgtggcaaaggtatgaagctcaacgaggttaaggaactcgtcagttgagttacaagatgtggtttaatcaattaatgtatattacctttcatgtttttacgtgtctgtaaaatcacaaagataaactatcaatctgagtatgtgtcacaactcacaaaatcatgtattatatgtatcaccattactgtatgaaaggcggtaactggatgcaaactatatgtattcacatttggaatgtgttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="144115" stop="145275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144415" g_stop="144524" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144525" i_stop="144600" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144601" g_stop="144974" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="484" r_length="374" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="508"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E733019" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144415" e_stop="144524"/>
          <exon e_start="144601" e_stop="144974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAA</genome_strand>
        <mrna_strand>CTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGGCAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTTACAAGATGTGGTTTAATCAATTAATGTATATTACCTTTCATGTTTTTACGTGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268625" ref_strand="+" ref_description="SGN-E268625 [cLEI-13-L16]">
      <seq>cccgggctgcaggcaaaaactagcggaccaaagtattttaacatgatctccagggagaagacgaatgggagccatacaaaccatacagggcagaatttgtggcaaaggtatgaagctcaacgaggttaatgaactcgtcagttgagtcacaagatgtggtttcatcaattaatgtatattccctttcatgtttttacacgtctgtaaaatcacaaagataaactatcaatctgagtatgtgtcacaactcacaaaatcatgtattatatgtatcaccattactgtatgaaaggcggtaactggatgcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="144347" stop="145242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144647" g_stop="144944" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="312" r_length="299" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E268625" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144647" e_stop="144944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACA-ATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACT</genome_strand>
        <mrna_strand>CAAAAACTAGCGGACCAAAGTATTTTAACATGATCTCCAGGGAGAAGACGAATGGGAGCCATACAAACCATACAGGGCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAATGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293623" ref_strand="+" ref_description="SGN-E293623 [cLET-15-J8]">
      <seq>aaaaactagcggaccaaagtagtgcaacatgagctccagggagaagacgaatatgagccagacaaaccatacaatcagaatttgtggcaaaggtatgaagctcaacgaggttaaggaactcgtcagttgagtcacaagatgtggtttcatcaattaatgtatattccctttcatgtttttacacgtctgtaaaatcacaaagataaactatcaatctgagtatgtgtcacaactcacaaaatcatgtattatatgtatcaccattactgtatgaaaggcggtaactggatgcaaactatatgtattcacatttggaatgtgttacaaattctagctcatatattgtatcatacattttacagttctaacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="144348" stop="145322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144648" g_stop="145029" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E293623" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144648" e_stop="145029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAAATTCTAGCTCATATATTGTATCATACATTTTACAGTTCTAACATATAATTTGGTT</genome_strand>
        <mrna_strand>AAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAAATTCTAGCTCATATATTGTATCATACATTTTACAGTTCTAACAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728582" ref_strand="+" ref_description="SGN-E728582 [LA18BB08]">
      <seq>accagttggtgtcagtttcagaatttcttgtttttctgattctgatgatagcaaaatccatagctaaactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggttcttttctttctcaagttctctttttgtgtttttctccatgattattgtttaatttcagttgatctcatatgggttttttttattttttttttatttttggggaaattgtgatgtacttggcaggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcaaaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatgccacaacttgtttattgtctagaagacctgtcattttgacctgaatatattgacacaaaattgtgtaaaattcatttatgttcatcccctctctctgcctttctcagttttcacatattcctttcaccttctgttcttacatgtaatctttaacaaggttgagcaatacctgattttcataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="145322" stop="148869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145620" g_stop="146088" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146388" g_stop="146439" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="521" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148035" g_stop="148191" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="678" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="148192" i_stop="148341" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148342" g_stop="148564" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="902" r_length="224" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="905" polyA_stop="922"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E728582" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145620" e_stop="146088"/>
          <exon e_start="146388" e_stop="146439"/>
          <exon e_start="148035" e_stop="148191"/>
          <exon e_start="148342" e_stop="148564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTTGGTGTCAGTTTCAGAATTTCTTGTTTTTCTGATTCTGATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAA-GTTGAGCAATACATGATTT</genome_strand>
        <mrna_strand>ACCAGTTGGTGTCAGTTTCAGAATTTCTTGTTTTTCTGATTCTGATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGGTTGAGCAATACCTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371646" ref_strand="-" ref_description="SGN-E371646 [TUS-29-E14](-)">
      <seq>ttttctgattctgatgatagcaaaatccatagctaaactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatgccacaacttgtttattgtctagaagacctgtcattttgacctgaatatattgacacaaaattgtgtaaaattcatttatgttcatcccctctctctgcctttctcagttttcacatattcctttcaccttctgttcttacatgtaatctttaacaagttgagcaatacatgatttcaataccagctttgtccaattgctagatgttgtaaatgaaattgagcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="145351" stop="148912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145651" g_stop="145878" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145879" i_stop="146004" i_length="126">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146005" g_stop="146088" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="312" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146388" g_stop="146439" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="364" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148035" g_stop="148191" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="521" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="148192" i_stop="148341" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="148342" g_stop="148615" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="795" r_length="274" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E371646" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371646" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="145651" e_stop="145878"/>
          <exon e_start="146005" e_stop="146088"/>
          <exon e_start="146388" e_stop="146439"/>
          <exon e_start="148035" e_stop="148191"/>
          <exon e_start="148342" e_stop="148615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTGATTCTGATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCTAGATGTTGTAAATGAAATTGAGCACCT</genome_strand>
        <mrna_strand>TTTTCTGATTCTGATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCTAGATGTTGTAAATGAAATTGAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293664" ref_strand="+" ref_description="SGN-E293664 [cLET-21-I1]">
      <seq>gatgatagcaaaatccatagctaaactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="145363" stop="148689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145663" g_stop="145878" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145879" i_stop="146004" i_length="126">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146005" g_stop="146088" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="300" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146388" g_stop="146439" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="352" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148035" g_stop="148191" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="509" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="148192" i_stop="148341" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="148342" g_stop="148389" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="557" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E293664" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145663" e_stop="145878"/>
          <exon e_start="146005" e_stop="146088"/>
          <exon e_start="146388" e_stop="146439"/>
          <exon e_start="148035" e_stop="148191"/>
          <exon e_start="148342" e_stop="148389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATG</genome_strand>
        <mrna_strand>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296486" ref_strand="+" ref_description="SGN-E296486 [cLET-19-F16]">
      <seq>gatgatagcaaaatccatagctaatactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagctgcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="145363" stop="146383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145663" g_stop="145878" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145879" i_stop="146004" i_length="126">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146005" g_stop="146083" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="296" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E296486" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145663" e_stop="145878"/>
          <exon e_start="146005" e_stop="146083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATAGCAAAATCCATAGCTAA-ACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATA</genome_strand>
        <mrna_strand>GATGATAGCAAAATCCATAGCTAATACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTGCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288337" ref_strand="+" ref_description="SGN-E288337 [cLES-16-L18]">
      <seq>gatagcaaaatccatagctaaactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatgccacaacttgtttattgtctagaagacctgtcattttgacctgaatatattgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="145366" stop="148745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145666" g_stop="145878" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145879" i_stop="146004" i_length="126">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146005" g_stop="146088" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="297" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146388" g_stop="146439" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="349" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148035" g_stop="148191" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="506" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="148192" i_stop="148341" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="148342" g_stop="148445" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="610" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E288337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145666" e_stop="145878"/>
          <exon e_start="146005" e_stop="146088"/>
          <exon e_start="146388" e_stop="146439"/>
          <exon e_start="148035" e_stop="148191"/>
          <exon e_start="148342" e_stop="148445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACAC</genome_strand>
        <mrna_strand>GATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292489" ref_strand="+" ref_description="SGN-E292489 [cLET-16-B2]">
      <seq>gatagcaaaatccatagctaaactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="145366" stop="146176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145666" g_stop="145876" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E292489" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>211</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145666" e_stop="145876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACA</genome_strand>
        <mrna_strand>GATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420547" ref_strand="+" ref_description="SGN-E420547 [STM-31-K18]">
      <seq>gccaaacgaacgaagctaaactcaacatagaaaaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctcctctttcttcttcttttttcactcagaaatttcatcaaacacatcgtaggctaaattcttacccatgtattagagctgtggatcttgatcaaaatacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataattctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgatggtgctggtggtttgacttgcacaacttgtttattgtctagaagtcctgtcattttgacctgaatatattaacaaaaaattctgtaaaattcatttatgttcatcccctctctctgcctttctcagttttcacacattcctttcaccttctgttcttacatgtaatctttaacaagttgagcaatacatgatttcaataccagctttgtccattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="145374" stop="148888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145671" g_stop="145878" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="210" r_length="206" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145879" i_stop="146004" i_length="126">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146005" g_stop="146088" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="294" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146388" g_stop="146439" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="346" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148035" g_stop="148149" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="461" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="148150" i_stop="148396" i_length="247">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="148397" g_stop="148588" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="652" r_length="191" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E420547" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145671" e_stop="145878"/>
          <exon e_start="146005" e_stop="146088"/>
          <exon e_start="146388" e_stop="146439"/>
          <exon e_start="148035" e_stop="148149"/>
          <exon e_start="148397" e_stop="148588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCT</genome_strand>
        <mrna_strand>AACGAACGA-AGCTAAACTCAACATAGAAA-AAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTCCTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACACATCGTAGGCTAAATTCTTACCCATGTATTAGAGCTGTGGATCTTGATCAAAATACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATTCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGATGGTGCTGGTGGTTTGACTTGCACAAC.......................................................................................................................................................................................................................................................TTGTTTATTGTCTAGAAGTCCTGTCATTTTGACCTGAATATATTAACAAAAAATTCTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACACATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCC-ATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462236" ref_strand="+" ref_description="SGN-E462236 [cPRO-11-E13]">
      <seq>aaaatccatagccaaacgaacgaagctaaactcaacatagaaaaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctcctctttcttcttcttttttcactcagaaatttcatcaaacacatcgtaggctaaattcttacccatgtattagagctgtggatcttgatcaaaatacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataattctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgatggtgctggtggtttgacttgcacaacatgtcaaggaagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgacgattagatatggaaaaatattcaccttggatgccacaacttgtttattgtctagaagtcctgtcattttgacctgaatatattaacaaaaaattctgtaaaaatcatttatgttcatcccctctctctgcctttctcagttttcacacattcctttcaccttctggtcttacatgtaatctttaaacagttgagcaatacatgattttcataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="145374" stop="148869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145671" g_stop="145878" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="220" r_length="206" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145879" i_stop="146004" i_length="126">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146005" g_stop="146088" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="304" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146388" g_stop="146439" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="356" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148035" g_stop="148191" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="513" r_length="157" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="148192" i_stop="148341" i_length="150">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.648" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="148342" g_stop="148576" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="748" r_length="235" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E462236" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145671" e_stop="145878"/>
          <exon e_start="146005" e_stop="146088"/>
          <exon e_start="146388" e_stop="146439"/>
          <exon e_start="148035" e_stop="148191"/>
          <exon e_start="148342" e_stop="148576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTT</genome_strand>
        <mrna_strand>AACGAACGA-AGCTAAACTCAACATAGAAA-AAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTCCTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACACATCGTAGGCTAAATTCTTACCCATGTATTAGAGCTGTGGATCTTGATCAAAATACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATTCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGATGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGAAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGACGATTAGATATGGAAAAATATTCACCTTGGATGCCACAACTTGTTTATTGTCTAGAAGTCCTGTCATTTTGACCTGAATATATTAACAAAAAATTCTGTAAAAATCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACACATTCCTTTCACCTTCTGGTCTTACATGTAATCTTTAAACAGTTGAGCAATACATGATTTTCATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733802" ref_strand="+" ref_description="SGN-E733802 [LB10DH11]">
      <seq>cggttaaactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatgccacaacttgtttattgtctagaagacctgtcattttgacctgaatatattgacacaaaattgtgtaaaattcatttatgttcatcccctctctctgcctttctcagttttcacatattcctttcaccttctgttcttacatgtaatctttaacaagttgagcaatacatgatttcaataccagctttgtccaattgctagatgttgtaaatgaaattgagcacctgtgtgtattgcattttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="145382" stop="148938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145680" g_stop="145878" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145879" i_stop="146004" i_length="126">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146005" g_stop="146088" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="283" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146388" g_stop="146439" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="335" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148035" g_stop="148191" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="492" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="148192" i_stop="148341" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="148342" g_stop="148637" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="788" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="789" polyA_stop="799"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E733802" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145680" e_stop="145878"/>
          <exon e_start="146005" e_stop="146088"/>
          <exon e_start="146388" e_stop="146439"/>
          <exon e_start="148035" e_stop="148191"/>
          <exon e_start="148342" e_stop="148637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCTAGATGTTGTAAATGAAATTGAGCACCTGTGTGTATTGCATTTTAAAAAA</genome_strand>
        <mrna_strand>CGGTTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCTAGATGTTGTAAATGAAATTGAGCACCTGTGTGTATTGCATTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614246" ref_strand="+" ref_description="SGN-E614246 [64030]">
      <seq>gctaaacaaaagatagaaaaaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctcctctttcttcttcttctttcattcagaaatttcattcaaacacatcgtaggcgaaattcttacccatgtattagagctgtggatcttgatcaaaacacggtgatagcaattacagttggggtgctcagtcttgctattggagttggaattccagttttttatgaaacccaaattgataatgctgcaaaaagagagaatacgcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagtgggtgagacagaagtctctcggtgtatcaactgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgacgattagatatggaaaaatattcaccttggatgccacaacttgtttattgtctagaagacctgtcattttgacctgaatatattgacaaaaaattctgtaaaaaaaacaaaaacagacacaaaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="145382" stop="148759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145682" g_stop="145878" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145879" i_stop="146004" i_length="126">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146005" g_stop="146088" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="282" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146388" g_stop="146439" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="334" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148035" g_stop="148191" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="491" r_length="157" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="148192" i_stop="148341" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="148342" g_stop="148458" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="608" r_length="117" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="609" polyA_stop="619"/>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E614246" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145682" e_stop="145878"/>
          <exon e_start="146005" e_stop="146088"/>
          <exon e_start="146388" e_stop="146439"/>
          <exon e_start="148035" e_stop="148191"/>
          <exon e_start="148342" e_stop="148458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCA-TCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAA</genome_strand>
        <mrna_strand>GCTAAACAAAAGATAGAAAAAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTCCTCTTTCTTCTTCTTCTTTCATTCAGAAATTTCATTCAAACACATCGTAGGCGAAATTCTTACCCATGTATTAGAGCTGTGGATCTTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTCTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAAACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAATACGCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGTGGGTGAGACAGAAGTCTCTCGGTGTATCAACTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGACGATTAGATATGGAAAAATATTCACCTTGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACAAAAAATTCTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466772" ref_strand="+" ref_description="SGN-E466772 [cPRO-26-C19]">
      <seq>gctaaactcaacatagaaaaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctcctctttcttcttcttttttcactcagaaatttcatcaaacacatcgtaggctaaattcttacccatgtattagagctgtggatcttgatcaaaatacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataattctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggaaggggtgagacagaagtctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="145382" stop="148405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145682" g_stop="145878" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145879" i_stop="146004" i_length="126">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146005" g_stop="146088" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="280" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146388" g_stop="146439" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="332" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148035" g_stop="148105" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="403" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E466772" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145682" e_stop="145878"/>
          <exon e_start="146005" e_stop="146088"/>
          <exon e_start="146388" e_stop="146439"/>
          <exon e_start="148035" e_stop="148105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCT</genome_strand>
        <mrna_strand>GCTAAACTCAACATAGAAA-AAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTCCTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACACATCGTAGGCTAAATTCTTACCCATGTATTAGAGCTGTGGATCTTGATCAAAATACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATTCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAAGGGGTGAGACAGAAGTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466762" ref_strand="+" ref_description="SGN-E466762 [cPRO-26-A19]">
      <seq>gctaaactcaacatagaaaaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctcctctttcttcttcttttttcactcagaaatttcatcaaacacatcgtaggctaaattcttacccatgtattagagctgtggatcttgatcaaaatacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataattctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacagtggagcttggagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="145382" stop="148388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145682" g_stop="145878" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145879" i_stop="146004" i_length="126">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146005" g_stop="146088" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="280" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146388" g_stop="146439" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="332" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148035" g_stop="148088" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="386" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E466762" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145682" e_stop="145878"/>
          <exon e_start="146005" e_stop="146088"/>
          <exon e_start="146388" e_stop="146439"/>
          <exon e_start="148035" e_stop="148088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGG</genome_strand>
        <mrna_strand>GCTAAACTCAACATAGAAA-AAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTCCTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACACATCGTAGGCTAAATTCTTACCCATGTATTAGAGCTGTGGATCTTGATCAAAATACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATTCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACAGTGGAGCTTGGAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371647" ref_strand="-" ref_description="SGN-E371647 [TUS-29-E14]">
      <seq>tcactttccgctttaaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatgccacaacttgtttattgtctagaagacctgtcattttgacctgaatatattgacacaaaattgtgtaaaattcatttatgttcatcccctctctctgcctttctcagttttcacatattcctttcaccttctgttcttacatgtaatctttaacaagttgagcaatacatgatttcaataccagctttgtccaattgctagatgttgtaatgaaattgagcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="145429" stop="148912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145729" g_stop="145878" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145879" i_stop="146004" i_length="126">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146005" g_stop="146088" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="234" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146388" g_stop="146439" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="286" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148035" g_stop="148191" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="443" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="148192" i_stop="148341" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="148342" g_stop="148615" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="716" r_length="273" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E371647" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371647" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="145729" e_stop="145878"/>
          <exon e_start="146005" e_stop="146088"/>
          <exon e_start="146388" e_stop="146439"/>
          <exon e_start="148035" e_stop="148191"/>
          <exon e_start="148342" e_stop="148615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCTAGATGTTGTAAATGAAATTGAGCACCT</genome_strand>
        <mrna_strand>TCACTTTCCGCTTTAAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCTAGATGTTGT-AATGAAATTGAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468474" ref_strand="+" ref_description="SGN-E468474 [cSTB-4-L6]">
      <seq>catttatcaactcacctcttaagcgggctcctctttcttcttcttttttcactcagaaatttcatcaaacacatcgtaggctaaattcttacccatgtattatagctgtggatcttgatcaaaatacggttcttttctttctcaagttctctttttgtggttttcttccatgattgttgcttaatttcagttgatctcatatgggtgtttttatttcttattttttggggattgtaatgtacttggcaggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataattctgcaaaaagagagaacactcagccctgctttccctgcactggcactggtgctcgtaagtatttcttaaactagactttccattctgttgtttctttaaatgttctatccgataagtacaaatgagcctagaggtatattgttacgtccacaagtgtacttaaaatacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="145478" stop="146857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145751" g_stop="146088" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146388" g_stop="146557" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="503" r_length="170" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E468474" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145751" e_stop="146088"/>
          <exon e_start="146388" e_stop="146557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTC-TCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAA</genome_strand>
        <mrna_strand>CATTTATCAACTCACCTCTTAAGCGGGCTCCTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACACATCGTAGGCTAAATTCTTACCCATGTATTATAGCTGTGGATCTTGATCAAAATACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGGTTTTCTTCCATGATTGTTGCTTAATTTCAGTTGATCTCATATGGG-TGTTTTTA--TTTCTTAT-TTTTTGGGG--ATTGTAATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATTCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTTCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTAAATGTTCTATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTACGTCCACAAGTGTACTTAAAATACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411329" ref_strand="+" ref_description="SGN-E411329 [STM-14-D5]">
      <seq>catttatcagctcacctcttaagcttcctcctctttcttcttcttttttcactcacaaatttcatcaaacacatcgtcggctaaattcttacccatgtattattagctgtggatcttgatcaaaatacggttcttttctttctcaagttctctttttgtggttttcttccatgattgttgcttaatttcacttgatctcatatgggtgttcctattttttattctttggggattgtaatgtacttggcaggtgatagcaattacaggtggggtgctcagtgttgctattggagttggaattccagttttttatgagacccacattgataattctgcaaaaagagagaacactcagccctgcttgccctgcactggcactggtgctcgtaagtatttcttaaactagactatccattctgtcgttactttaaatgttctatccgataagtacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="145451" stop="146807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145751" g_stop="146088" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146388" g_stop="146507" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="454" r_length="120" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E411329" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145751" e_stop="146088"/>
          <exon e_start="146388" e_stop="146507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTA-AAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTC-TCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAA</genome_strand>
        <mrna_strand>CATTTATCAGCTCACCTCTTAAGCTTCCTCCTCTTTCTTCTTCTTTTTTCACTCACAAATTTCATCAAACACATCGTCGGCTAAATTCTTACCCATGTATTATTAGCTGTGGATCTTGATCAAAATACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGGTTTTCTTCCATGATTGTTGCTTAATTTCACTTGATCTCATATGGG-TGTTCCTA--TTTTTTAT-TCTTTGGGG--ATTGTAATGTACTTGGCAGGTGATAGCAATTACAGGTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCACATTGATAATTCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTGCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTATCCATTCTGTCGTTACTTTAAATGTTCTATCCGATAAGTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295012" ref_strand="+" ref_description="SGN-E295012 [cLET-17-P20]">
      <seq>ttgatcaaaacacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaaatctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatgccacaacttgtttattgtctagaagacctgtcattttgacctgaatatattgacacaaaattgtgtaaaattcatttatgttcatgcgctctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="145702" stop="148785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145865" g_stop="145878" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145879" i_stop="146004" i_length="126">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146005" g_stop="146088" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="98" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146388" g_stop="146439" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="150" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148035" g_stop="148191" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="307" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="148192" i_stop="148341" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="148342" g_stop="148485" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="451" r_length="144" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E295012" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145865" e_stop="145878"/>
          <exon e_start="146005" e_stop="146088"/>
          <exon e_start="146388" e_stop="146439"/>
          <exon e_start="148035" e_stop="148191"/>
          <exon e_start="148342" e_stop="148485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCT</genome_strand>
        <mrna_strand>TTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAATCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATGCGCTCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430692" ref_strand="-" ref_description="SGN-E430692 [STM-54-I13]">
      <seq>ggggtgctcagtgttgctattggagttggaattccagttttttatgagccccaaattgataattctgcaaaaagagagaccagtcagccctgtttcccctgcactggctctggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgatggtgctggtggtttgatttgcacaacatgtcaaggaagtggcattcaacctcggtaccttgattgcagggaattcaaggacgacgattagatatggaaaaatattcaccttggatgccacaacttgtttattgtctagaagtcctgtcattttgacctgaatatattaacaaaaaattctgtaaaattcatttatgttcatcccctctctgtgccattctcagttttcacacattcctttcaccttctgttcttacatgtagtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="145723" stop="148840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146023" g_stop="146088" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146388" g_stop="146439" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="118" r_length="52" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148035" g_stop="148191" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="275" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="148192" i_stop="148341" i_length="150">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.648" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148342" g_stop="148540" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="474" r_length="199" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E430692" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430692" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="146023" e_stop="146088"/>
          <exon e_start="146388" e_stop="146439"/>
          <exon e_start="148035" e_stop="148191"/>
          <exon e_start="148342" e_stop="148540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTT</genome_strand>
        <mrna_strand>GGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGCCCCAAATTGATAATTCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGACCAGTCAGCCCTGTTTCCCCTGCACTGGCTCTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGATGGTGCTGGTGGTTTGATTTGCACAACATGTCAAGGAAGTGGCATTCAACCTCGGTACCTTGATTGCAG......................................................................................................................................................GGAATTCAAGGACGACGATTAGATATGGAAAAATATTCACCTTGGATGCCACAACTTGTTTATTGTCTAGAAGTCCTGTCATTTTGACCTGAATATATTAACAAAAAATTCTGTAAAATTCATTTATGTTCATCCCCTCTCTGTGCCATTCTCAGTTTTCACACATTCCTTTCACCTTCTGTTCTTACATGTAGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280591" ref_strand="+" ref_description="SGN-E280591 [cLER-1-D23]">
      <seq>tttttttgctcaatttcatttacaacatctagcaattggacaaagctggtattgaaatcatgtattgctcaacttgttaaagattacatgtaagaacagaaggtgaaaggaatatgtgaaaactgagaaaggcagagagaggggatgaacataaatgaattttacacaattttgtgtcaatatattcaggtcaaaatgacaggtcttctagacaataaacaagttgtggcatccatgctgagtattcttccatatataatcatcgaccttgaattccctgcgatcaaggtaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="-" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="148912" stop="148023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="148613" g_stop="148325" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="294" r_length="289" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="-" ref_id="SGN-E280591" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="148613" e_stop="148325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTCAATTTCATTTACAACATCTAGCAATTGGACAAAGCTGGTATTGAAATCATGTATTGCTCAACTTGTTAAAGATTACATGTAAGAACAGAAGGTGAAAGGAATATGTGAAAACTGAGAAAGGCAGAGAGAGGGGATGAACATAAATGAATTTTACACAATTTTGTGTCAATATATTCAGGTCAAAATGACAGGTCTTCTAGACAATAAACAAGTTGTGGCATCCATGCTGAGTATTCTTCCATATCTAATCATCGTCCTTGAATTCCCTGTCGAGAAGAAGATG</genome_strand>
        <mrna_strand>TTGCTCAATTTCATTTACAACATCTAGCAATTGGACAAAGCTGGTATTGAAATCATGTATTGCTCAACTTGTTAAAGATTACATGTAAGAACAGAAGGTGAAAGGAATATGTGAAAACTGAGAAAGGCAGAGAGAGGGGATGAACATAAATGAATTTTACACAATTTTGTGTCAATATATTCAGGTCAAAATGACAGGTCTTCTAGACAATAAACAAGTTGTGGCATCCATGCTGAGTATTCTTCCATATATAATCATCGACCTTGAATTCCCTGCGATCAAGGTACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718280" ref_strand="+" ref_description="SGN-E718280 [FC04AH05]">
      <seq>gggcgattggcggccaatcggccgaattaagttacaagttttcactagggtttaaattcatcgtctccctcgttccaactggaaaaaagaactgtttcctctgtatctcgtactggaacttgtaaatttgcatcactaattagaagtatattttggattaaaagtgaagtgaagtgaagggagaatcatgctgtatataataggtcttggattgggtgatgataaagatataactttgaaaggtcttgaagcagtaaaaaaatgcagcaaagtatacatggaagcttacacttcacttctctcttttgggctttctccaaatggtctttccaatctggaaaatctttatggaagatcaataacacttgcagatagggaaatggtagaggagaaagctgatgagatccttaatgaagctaaagcttctgacgtggcttttctagttgttggtgatccttttggagccacaacccacactgatattgtcgtccgtgcgaagaagttgggtgtggatgttaaggtgatacacaatgcatctgtgatgaatgctgttggagtgtgtggcttacagctctaccattatggagagacagtgtccataccgttcttcactgagacctggaggccggatagtttctatgagaagattagagaaaaccgaaagcttggactacacacactctgcttgttagatatacgagtgaaagaaccaaccatcgagtctctttgcagaggaaagaagcagtatgaacctcccagatttatgacagttaacacagcaattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="148776" stop="152053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149084" g_stop="149389" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="337" r_length="306" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149390" i_stop="149485" i_length="96">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="149486" g_stop="149610" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="462" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="149611" i_stop="150679" i_length="1069">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="150680" g_stop="150909" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="692" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="150910" i_stop="151581" i_length="672">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="151582" g_stop="151621" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="732" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="151622" i_stop="151698" i_length="77">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="151699" g_stop="151753" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="787" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E718280" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149084" e_stop="149389"/>
          <exon e_start="149486" e_stop="149610"/>
          <exon e_start="150680" e_stop="150909"/>
          <exon e_start="151582" e_stop="151621"/>
          <exon e_start="151699" e_stop="151753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGTTTTCACTAGGGTTTAAATTCATCGTCTCCCTCGTTCCAACTGGAAAAAAGAACTGTTTCCTCTGTATCTCGTACTGGAACTTGTAAATTTGCATCACTAATTAGAAGTATATTTTGGATTAGAAGTGAAGTGAAGTGAAGGGAGAATCATGCTGTATATAATAGGTCTTGGATTGGGTGATGATAAAGATATAACTTTGAAAGGTCTTGAAGCAGTAAAAAAATGCAGCAAAGTATACATGGAAGCTTACACTTCACTTCTCTCTTTTGGGCTTTCTCCAAATGGTCTTTCCAATCTGGTTAGAAAAAAGCTACCGTCTTTTCTTGTAATTTTGTTTTCAGTTAGTGAAAAAAAAGAGAGTGATTTTGATGATAAAGTTTTGATCTTTTTTCAGGAAAATCTTTATGGAAGATCAATAACACTTGCAGATAGGGAAATGGTAGAGGAGAAAGCTGATGAGATCCTTAATGAAGCTAAAGCTTCTGACGTGGCTTTTCTAGTTGTTGGTGATCCTTTTGGGTATTCTTCATTTTTTTGATATGCTTATTTATTTGGATAATGAAGACCCTTTTGGATATTTGACTTTTAGTTGGTGTCAATTTTTTATCTTGGTTATGGTAGAAGGTTAGTAGTTAGGCGAGGATTGTCTCGCGGGTTAGGTTTGGGGTAGTATGGCGCCTGTATCTGTTTCCCCTTTGTTATCAGCAGAATTAGCAATTTTTGCGTAGTTTCTTGTCTTGCGGTTTACGTTGCTACCCCTTTGTGTCTTGTGTTTGGTTATCACATGACTTTGTTGCTGTTACTTTGTCCATTCCCTATATGCTTTGTGATGCTTCCTCCAATACATCTTTTATTTCTTTCCTTTTGTATGTTCTTTGATTTGTGTTACTTGAGCCGGGGGGTTCTTTGGGATACAGTCTCTCTACTTCCGTAAGGTAGGGATAAGGTATGCGTACACCTACTCTCCCCAGTCTTAGGTCAGTTCATGTAGCTTTGTTCAATCTTGTTTCACTTGGTAGTGGTTAATTTGGCAAAGAAGTAGATAGTATGCATGATTGCACCTATTCTGAATTGAACATTCACCTAGATTCTCTAAAATTGGGAACAATAATTGGTTGCTTCTTTAAGTTTCGATAATGTGCCAGCATATCATTGAACTTTGTTGCAAAGCACCCAGTAAATTATCAGTAATTTATCCTTCTAAGGTAGGAGGAGTTTTTGGAATAAGGACCTTTGTATTGTTTAAAAACTATGTTAATGCATTTCTCTTTCAATATTGGTTATGCCTTCTATTTGGAACTTTAATTGACAGTTGAAATCGCTTATAAGAGAAATCACGTAAATGTTATCGCTTATAACGGGATGACTTGTGGAAGTTCTCGAAAATGATGAACTTTGTTGATTTATGTTAGCAAAAGCTTAATTGGGTAATCTTCCTTAGGAGGAGAATATCTTCAACTGTCTTGTTTTGTTTATGGATTTAATAAACAAGTAAAATACAAAGATGGTTCTTTTCATGTTGACACATAGATGTTCTTTCACTTATCTACTTCCTTTCCTCTCCATCATATGTCAATATTCACTACAGAGCCACAACCCACACTGATATTGTCGTCCGTGCGAAGAAGTTGGGTGTGGATGTTAAGGTGATACACAATGCATCTGTGATGAATGCTGTTGGAGTGTGTGGCTTACAGCTCTACCATTATGGAGAGACAGTGTCCATACCGTTCTTCACTGAGACCTGGAGGCCGGATAGTTTCTATGAGAAGATTAGAGAAAACCGAAAGCTTGGACTACACACACTCTGCTTGTTAGGTAAGTGGCTATTTAACTACTTTGTTTGTTCTTATATTTGTGGTATCCGGGGCAACTTCTGTCACCTGTGACTAAACAACTGAGAAGCCTATTCTGTTCAGTAGCAAGTGTTATCAGGATAATCTTGCCTGTCAAGGTTAGCATATTTGTAGTTGGCATAACATTCTGTTACTCCTACGTTACTGCAGTGATAATACTGTAGGATAGTTTCTGTGGAAAATAGCTTAGCGCAAGGATGATAAAGCTTAACGACTCTCATTCTTGTTACGTCCTCAACCGATATACCATCCCCTTAGTGATTGTTATTTGGCTACATCATGAGTTATGTGTTACCATATATATTTCATATATATATGACTAAAAATTTTCAGTTGCCAGTTTTGCCTCTTTTACCAATCAAAACACTTCAGTTGACGGTCTATCATCTTTTGCTTTTAAGTGGAATATTTTCACCGAGCATACTTCTGGACTAGTTTTCAGAGGATTCATTCTCAACCTTAAACACCATTGTAGTGCTAACAAGGATATACGACATGAAATTAGATGTTTCTAGTTAAGTTTATGTATTACTGGTGACTTGTGAGGTTACAGAAGTACTTGATCGATCTTTTATTGCCTTACTTTTTGTGCAGTCTTCTTCATTCAATTGCATCTTCATCTTCTGATTTGCAGATATACGAGTGAAAGAACCAACCATCGAGTCTCTTTGCAGGTTAGACATCAATGTTGTTTCCATTTATTCTTAGACGAATCACTTGAAATAGTATGTGACCCTGATTTTATTCTCAGAGGAAAGAAGCAGTATGAACCTCCCAGATTTATGACAGTTAACACAGCAATTGAG</genome_strand>
        <mrna_strand>TTACAAGTTTTCACTAGGGTTTAAATTCATCGTCTCCCTCGTTCCAACTGGAAAAAAGAACTGTTTCCTCTGTATCTCGTACTGGAACTTGTAAATTTGCATCACTAATTAGAAGTATATTTTGGATTAAAAGTGAAGTGAAGTGAAGGGAGAATCATGCTGTATATAATAGGTCTTGGATTGGGTGATGATAAAGATATAACTTTGAAAGGTCTTGAAGCAGTAAAAAAATGCAGCAAAGTATACATGGAAGCTTACACTTCACTTCTCTCTTTTGGGCTTTCTCCAAATGGTCTTTCCAATCTG................................................................................................GAAAATCTTTATGGAAGATCAATAACACTTGCAGATAGGGAAATGGTAGAGGAGAAAGCTGATGAGATCCTTAATGAAGCTAAAGCTTCTGACGTGGCTTTTCTAGTTGTTGGTGATCCTTTTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCACAACCCACACTGATATTGTCGTCCGTGCGAAGAAGTTGGGTGTGGATGTTAAGGTGATACACAATGCATCTGTGATGAATGCTGTTGGAGTGTGTGGCTTACAGCTCTACCATTATGGAGAGACAGTGTCCATACCGTTCTTCACTGAGACCTGGAGGCCGGATAGTTTCTATGAGAAGATTAGAGAAAACCGAAAGCTTGGACTACACACACTCTGCTTGTTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACGAGTGAAAGAACCAACCATCGAGTCTCTTTGCAG.............................................................................AGGAAAGAAGCAGTATGAACCTCCCAGATTTATGACAGTTAACACAGCAATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572719" ref_strand="+" ref_description="SGN-E572719 [31917]">
      <seq>cacttctctcttttgggctttctccaaatggcctttccaatctggaaaatctttatggaaaatcaattacacttgctgatagggaaatggtagaggagaaagctgatgagatccttaatgaagctaaatcttctgacgtggcttttctagttgttggtgatccttttggagccacaacccacactgatattgttgtccgtgctaagaatctgggtgtggatgttaaggtgatacacaatgcatctgtgatgaatgctgttggagtgtgtggcttacagctctaccattatggagagacagtttccataccgttcttcactgaaacctggaggcctgatagtttctatgagaagattagagaaaaccgaaagcttggactacacacgctctgcttgttagatatacgagtgaaagaacccaccattgagtctctttgcagaggaaagaagcagtatgaaccanccaggtttatgacagttaacacagcaatcgagcagctcttagaggttgaagaagcctgtggagaatctgtatacggtgaaaatacaatttgtgtaggttttgcacggctggggagtgaagaccagaaggtggttgctggttcaatgaagcaacttctaacagtcgactttgggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="149046" stop="152876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149346" g_stop="149389" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="149390" i_stop="149485" i_length="96">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="149486" g_stop="149610" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="169" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="149611" i_stop="150679" i_length="1069">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="150680" g_stop="150909" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="399" r_length="230" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="150910" i_stop="151581" i_length="672">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="151582" g_stop="151621" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="439" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="151622" i_stop="151698" i_length="77">
            <donor d_prob="0.976" d_score="0.95"/>
            <acceptor a_prob="0.922" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="151699" g_stop="151790" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="531" r_length="92" r_score="0.935"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="151791" i_stop="152470" i_length="680">
            <donor d_prob="0.485" d_score="0.94"/>
            <acceptor a_prob="0.864" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="152471" g_stop="152576" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="637" r_length="106" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E572719" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149346" e_stop="149389"/>
          <exon e_start="149486" e_stop="149610"/>
          <exon e_start="150680" e_stop="150909"/>
          <exon e_start="151582" e_stop="151621"/>
          <exon e_start="151699" e_stop="151790"/>
          <exon e_start="152471" e_stop="152576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCTCTCTTTTGGGCTTTCTCCAAATGGTCTTTCCAATCTGGTTAGAAAAAAGCTACCGTCTTTTCTTGTAATTTTGTTTTCAGTTAGTGAAAAAAAAGAGAGTGATTTTGATGATAAAGTTTTGATCTTTTTTCAGGAAAATCTTTATGGAAGATCAATAACACTTGCAGATAGGGAAATGGTAGAGGAGAAAGCTGATGAGATCCTTAATGAAGCTAAAGCTTCTGACGTGGCTTTTCTAGTTGTTGGTGATCCTTTTGGGTATTCTTCATTTTTTTGATATGCTTATTTATTTGGATAATGAAGACCCTTTTGGATATTTGACTTTTAGTTGGTGTCAATTTTTTATCTTGGTTATGGTAGAAGGTTAGTAGTTAGGCGAGGATTGTCTCGCGGGTTAGGTTTGGGGTAGTATGGCGCCTGTATCTGTTTCCCCTTTGTTATCAGCAGAATTAGCAATTTTTGCGTAGTTTCTTGTCTTGCGGTTTACGTTGCTACCCCTTTGTGTCTTGTGTTTGGTTATCACATGACTTTGTTGCTGTTACTTTGTCCATTCCCTATATGCTTTGTGATGCTTCCTCCAATACATCTTTTATTTCTTTCCTTTTGTATGTTCTTTGATTTGTGTTACTTGAGCCGGGGGGTTCTTTGGGATACAGTCTCTCTACTTCCGTAAGGTAGGGATAAGGTATGCGTACACCTACTCTCCCCAGTCTTAGGTCAGTTCATGTAGCTTTGTTCAATCTTGTTTCACTTGGTAGTGGTTAATTTGGCAAAGAAGTAGATAGTATGCATGATTGCACCTATTCTGAATTGAACATTCACCTAGATTCTCTAAAATTGGGAACAATAATTGGTTGCTTCTTTAAGTTTCGATAATGTGCCAGCATATCATTGAACTTTGTTGCAAAGCACCCAGTAAATTATCAGTAATTTATCCTTCTAAGGTAGGAGGAGTTTTTGGAATAAGGACCTTTGTATTGTTTAAAAACTATGTTAATGCATTTCTCTTTCAATATTGGTTATGCCTTCTATTTGGAACTTTAATTGACAGTTGAAATCGCTTATAAGAGAAATCACGTAAATGTTATCGCTTATAACGGGATGACTTGTGGAAGTTCTCGAAAATGATGAACTTTGTTGATTTATGTTAGCAAAAGCTTAATTGGGTAATCTTCCTTAGGAGGAGAATATCTTCAACTGTCTTGTTTTGTTTATGGATTTAATAAACAAGTAAAATACAAAGATGGTTCTTTTCATGTTGACACATAGATGTTCTTTCACTTATCTACTTCCTTTCCTCTCCATCATATGTCAATATTCACTACAGAGCCACAACCCACACTGATATTGTCGTCCGTGCGAAGAAGTTGGGTGTGGATGTTAAGGTGATACACAATGCATCTGTGATGAATGCTGTTGGAGTGTGTGGCTTACAGCTCTACCATTATGGAGAGACAGTGTCCATACCGTTCTTCACTGAGACCTGGAGGCCGGATAGTTTCTATGAGAAGATTAGAGAAAACCGAAAGCTTGGACTACACACACTCTGCTTGTTAGGTAAGTGGCTATTTAACTACTTTGTTTGTTCTTATATTTGTGGTATCCGGGGCAACTTCTGTCACCTGTGACTAAACAACTGAGAAGCCTATTCTGTTCAGTAGCAAGTGTTATCAGGATAATCTTGCCTGTCAAGGTTAGCATATTTGTAGTTGGCATAACATTCTGTTACTCCTACGTTACTGCAGTGATAATACTGTAGGATAGTTTCTGTGGAAAATAGCTTAGCGCAAGGATGATAAAGCTTAACGACTCTCATTCTTGTTACGTCCTCAACCGATATACCATCCCCTTAGTGATTGTTATTTGGCTACATCATGAGTTATGTGTTACCATATATATTTCATATATATATGACTAAAAATTTTCAGTTGCCAGTTTTGCCTCTTTTACCAATCAAAACACTTCAGTTGACGGTCTATCATCTTTTGCTTTTAAGTGGAATATTTTCACCGAGCATACTTCTGGACTAGTTTTCAGAGGATTCATTCTCAACCTTAAACACCATTGTAGTGCTAACAAGGATATACGACATGAAATTAGATGTTTCTAGTTAAGTTTATGTATTACTGGTGACTTGTGAGGTTACAGAAGTACTTGATCGATCTTTTATTGCCTTACTTTTTGTGCAGTCTTCTTCATTCAATTGCATCTTCATCTTCTGATTTGCAGATATACGAGTGAAAGAACCAACCATCGAGTCTCTTTGCAGGTTAGACATCAATGTTGTTTCCATTTATTCTTAGACGAATCACTTGAAATAGTATGTGACCCTGATTTTATTCTCAGAGGAAAGAAGCAGTATGAACCTCCCAGATTTATGACAGTTAACACAGCAATTGAGCAGCTCTTAGAGGTTGAAGAAGCCCGTGGAGAATTTGGTATGTTCACGAATTCATGCTTCTGCTTGACAAAATGGTGGGGGTGGGGCGGGTGACTATTAATAGTCTACTTACCTTAGTTTATCCAAGTTTTCATTTTCAGCTATGTTGCTCGGACTCTCCAAAATTGTTGGGATCCTCCACAAAGCACTACTCTTAGAGTATCTAACATGCACCTGTCGATATTTTTAAAGAGTCTGAGCAACATAGGTTTTCAATAATTCACTGTGTGATCAAGATGTGATTTAGTTAATACAGATTTTGAAAACCTGTCCTTGTGACTTTGTGCTTAATTTGACATAAATCTCATTTACAGTTCAAGCATTCTCTCTTCTTTAGCGAAAAAGGAATCCGTACTGCTTGTGTAAATGTTTGCCAAACATGCCAGTACAATATCCATATTATAATTTCCCTTGACACGAGACATGACTAAGAGAGGTTGCAAGTCATTTTCCTGCTTTTATGAGCTCAATCTGAAGCGAACTAGTATGATAATGGATATGGTTTCGATATGCCTCTAACTTACGCCTTATTTACAATCATGACATACTTCTTGCGTATAATTGACATCTGGTTTTGTTTTAGCCCCGGCTTTGTGGCATTAATAGTTATAAAGAATGTTGTTTGACATTTATAGTGACTAAACGTTTCATTTTGCATTCCCGTTTTTAAAATTACAGTATACGGTGAAAATACAATCTGTGTTGGTTTTGCACGGCTGGGGAGTGAAGACCAAAAGGTGGTTGCTGGTTCAATGAAGCAACTTCTAACAGTCGACTTTGGGGC</genome_strand>
        <mrna_strand>CACTTCTCTCTTTTGGGCTTTCTCCAAATGGCCTTTCCAATCTG................................................................................................GAAAATCTTTATGGAAAATCAATTACACTTGCTGATAGGGAAATGGTAGAGGAGAAAGCTGATGAGATCCTTAATGAAGCTAAATCTTCTGACGTGGCTTTTCTAGTTGTTGGTGATCCTTTTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCACAACCCACACTGATATTGTTGTCCGTGCTAAGAATCTGGGTGTGGATGTTAAGGTGATACACAATGCATCTGTGATGAATGCTGTTGGAGTGTGTGGCTTACAGCTCTACCATTATGGAGAGACAGTTTCCATACCGTTCTTCACTGAAACCTGGAGGCCTGATAGTTTCTATGAGAAGATTAGAGAAAACCGAAAGCTTGGACTACACACGCTCTGCTTGTTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACGAGTGAAAGAACCCACCATTGAGTCTCTTTGCAG.............................................................................AGGAAAGAAGCAGTATGAACCANCCAGGTTTATGACAGTTAACACAGCAATCGAGCAGCTCTTAGAGGTTGAAGAAGCCTGTGGAGAATCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACGGTGAAAATACAATTTGTGTAGGTTTTGCACGGCTGGGGAGTGAAGACCAGAAGGTGGTTGCTGGTTCAATGAAGCAACTTCTAACAGTCGACTTTGGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350522" ref_strand="+" ref_description="SGN-E350522 [cTOS-5-C14]">
      <seq>cacactgatattgtcgtccgtgcgaagaagttgggtgtggatgttaaggtgatacacaatgcatctgtgatgaatgctgttggagtgtgtggcttacagctctaccattatggagagacagtgtccataccgttcttcactgagacctggaggccggatagtttctatgagaagattagagaaaaccgaaagcttggactacacacactctgcttgttagatatacgagtgaaagaaccaaccatcgagtctctttgcagaggaaagaagcagtatgaacctcccagatttatgacagttaacacagcaattgagcagctcttagaggttgaagaagcccgtggagaatttgtatacggtgaaaatacaatctgtgttggttttgcacggctggggagtgaagaccaaaaggtggttgctggttcaatgaagcaacttctaacagtcgactttggggcgccattgcattgcttagtcatagttggcaaaacacaccctgttgaagaagaatgctggaattttatgggcttttagaaacgtatcacangattgcaatagcaaatactgtattcatgtgttgccttttgtaccattccattctttttggtgactatttatttaggcattaagatgactatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="150390" stop="153060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150690" g_stop="150909" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="150910" i_stop="151581" i_length="672">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="151582" g_stop="151621" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="260" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="151622" i_stop="151698" i_length="77">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="151699" g_stop="151790" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="352" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="151791" i_stop="152470" i_length="680">
            <donor d_prob="0.485" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="152471" g_stop="152760" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="641" r_length="289" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E350522" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150690" e_stop="150909"/>
          <exon e_start="151582" e_stop="151621"/>
          <exon e_start="151699" e_stop="151790"/>
          <exon e_start="152471" e_stop="152760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTGATATTGTCGTCCGTGCGAAGAAGTTGGGTGTGGATGTTAAGGTGATACACAATGCATCTGTGATGAATGCTGTTGGAGTGTGTGGCTTACAGCTCTACCATTATGGAGAGACAGTGTCCATACCGTTCTTCACTGAGACCTGGAGGCCGGATAGTTTCTATGAGAAGATTAGAGAAAACCGAAAGCTTGGACTACACACACTCTGCTTGTTAGGTAAGTGGCTATTTAACTACTTTGTTTGTTCTTATATTTGTGGTATCCGGGGCAACTTCTGTCACCTGTGACTAAACAACTGAGAAGCCTATTCTGTTCAGTAGCAAGTGTTATCAGGATAATCTTGCCTGTCAAGGTTAGCATATTTGTAGTTGGCATAACATTCTGTTACTCCTACGTTACTGCAGTGATAATACTGTAGGATAGTTTCTGTGGAAAATAGCTTAGCGCAAGGATGATAAAGCTTAACGACTCTCATTCTTGTTACGTCCTCAACCGATATACCATCCCCTTAGTGATTGTTATTTGGCTACATCATGAGTTATGTGTTACCATATATATTTCATATATATATGACTAAAAATTTTCAGTTGCCAGTTTTGCCTCTTTTACCAATCAAAACACTTCAGTTGACGGTCTATCATCTTTTGCTTTTAAGTGGAATATTTTCACCGAGCATACTTCTGGACTAGTTTTCAGAGGATTCATTCTCAACCTTAAACACCATTGTAGTGCTAACAAGGATATACGACATGAAATTAGATGTTTCTAGTTAAGTTTATGTATTACTGGTGACTTGTGAGGTTACAGAAGTACTTGATCGATCTTTTATTGCCTTACTTTTTGTGCAGTCTTCTTCATTCAATTGCATCTTCATCTTCTGATTTGCAGATATACGAGTGAAAGAACCAACCATCGAGTCTCTTTGCAGGTTAGACATCAATGTTGTTTCCATTTATTCTTAGACGAATCACTTGAAATAGTATGTGACCCTGATTTTATTCTCAGAGGAAAGAAGCAGTATGAACCTCCCAGATTTATGACAGTTAACACAGCAATTGAGCAGCTCTTAGAGGTTGAAGAAGCCCGTGGAGAATTTGGTATGTTCACGAATTCATGCTTCTGCTTGACAAAATGGTGGGGGTGGGGCGGGTGACTATTAATAGTCTACTTACCTTAGTTTATCCAAGTTTTCATTTTCAGCTATGTTGCTCGGACTCTCCAAAATTGTTGGGATCCTCCACAAAGCACTACTCTTAGAGTATCTAACATGCACCTGTCGATATTTTTAAAGAGTCTGAGCAACATAGGTTTTCAATAATTCACTGTGTGATCAAGATGTGATTTAGTTAATACAGATTTTGAAAACCTGTCCTTGTGACTTTGTGCTTAATTTGACATAAATCTCATTTACAGTTCAAGCATTCTCTCTTCTTTAGCGAAAAAGGAATCCGTACTGCTTGTGTAAATGTTTGCCAAACATGCCAGTACAATATCCATATTATAATTTCCCTTGACACGAGACATGACTAAGAGAGGTTGCAAGTCATTTTCCTGCTTTTATGAGCTCAATCTGAAGCGAACTAGTATGATAATGGATATGGTTTCGATATGCCTCTAACTTACGCCTTATTTACAATCATGACATACTTCTTGCGTATAATTGACATCTGGTTTTGTTTTAGCCCCGGCTTTGTGGCATTAATAGTTATAAAGAATGTTGTTTGACATTTATAGTGACTAAACGTTTCATTTTGCATTCCCGTTTTTAAAATTACAGTATACGGTGAAAATACAATCTGTGTTGGTTTTGCACGGCTGGGGAGTGAAGACCAAAAGGTGGTTGCTGGTTCAATGAAGCAACTTCTAACAGTCGACTTTGGGGCGCCATTGCATTGCTTAGTCATAGTTGGCAAAACACACCCTGTTGAAGAAGAAATGCTGGAATTTTATGGGCTTTAGAAAACGTATCACAGGATTGCAATAGCAAATACTGTATTCATGTGTTGCCTTTTGTACCATTCCATTCTTTTTGGTGACTATTTATTTAGGCATTAAGATGACTATGAT</genome_strand>
        <mrna_strand>CACACTGATATTGTCGTCCGTGCGAAGAAGTTGGGTGTGGATGTTAAGGTGATACACAATGCATCTGTGATGAATGCTGTTGGAGTGTGTGGCTTACAGCTCTACCATTATGGAGAGACAGTGTCCATACCGTTCTTCACTGAGACCTGGAGGCCGGATAGTTTCTATGAGAAGATTAGAGAAAACCGAAAGCTTGGACTACACACACTCTGCTTGTTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACGAGTGAAAGAACCAACCATCGAGTCTCTTTGCAG.............................................................................AGGAAAGAAGCAGTATGAACCTCCCAGATTTATGACAGTTAACACAGCAATTGAGCAGCTCTTAGAGGTTGAAGAAGCCCGTGGAGAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACGGTGAAAATACAATCTGTGTTGGTTTTGCACGGCTGGGGAGTGAAGACCAAAAGGTGGTTGCTGGTTCAATGAAGCAACTTCTAACAGTCGACTTTGGGGCGCCATTGCATTGCTTAGTCATAGTTGGCAAAACACACCCTGTTGAAGAAG-AATGCTGGAATTTTATGGGCTTTTAGAAACGTATCACANGATTGCAATAGCAAATACTGTATTCATGTGTTGCCTTTTGTACCATTCCATTCTTTTTGGTGACTATTTATTTAGGCATTAAGATGACTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325422" ref_strand="-" ref_description="SGN-E325422 [cTOC-1-O14]">
      <seq>agcaattgagcagctcttagaggttgaagaagcccgtggagaatttgtatacggtgaaaatacaatctgtgttggttttgcacggctggggagtgaagaccaaaaggtggttgctggttcaatgaagcaacttctaacagtcgactttggggcgccattgcattgcttagtcatagttggcaaaacacaccctgttgaagaagaaatgctggaattttatgggctttagaaaacgtatcacaggattgcaatagcaaatactgtattcatgtgttgccttttgtaccattccattctttttggtgactatttatttaggcattaagatgactatgatgtattttttgctttgtaaactcttcccatcttcaagtgattttgacatattttcaagaattcttaaatttaagatattgttggttatttttgtaatctttcactagtattctcaatacattatatcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="151444" stop="153190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151744" g_stop="151790" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151791" i_stop="152470" i_length="680">
            <donor d_prob="0.485" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="152471" g_stop="152890" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="467" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E325422" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325422" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="151744" e_stop="151790"/>
          <exon e_start="152471" e_stop="152890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTGAGCAGCTCTTAGAGGTTGAAGAAGCCCGTGGAGAATTTGGTATGTTCACGAATTCATGCTTCTGCTTGACAAAATGGTGGGGGTGGGGCGGGTGACTATTAATAGTCTACTTACCTTAGTTTATCCAAGTTTTCATTTTCAGCTATGTTGCTCGGACTCTCCAAAATTGTTGGGATCCTCCACAAAGCACTACTCTTAGAGTATCTAACATGCACCTGTCGATATTTTTAAAGAGTCTGAGCAACATAGGTTTTCAATAATTCACTGTGTGATCAAGATGTGATTTAGTTAATACAGATTTTGAAAACCTGTCCTTGTGACTTTGTGCTTAATTTGACATAAATCTCATTTACAGTTCAAGCATTCTCTCTTCTTTAGCGAAAAAGGAATCCGTACTGCTTGTGTAAATGTTTGCCAAACATGCCAGTACAATATCCATATTATAATTTCCCTTGACACGAGACATGACTAAGAGAGGTTGCAAGTCATTTTCCTGCTTTTATGAGCTCAATCTGAAGCGAACTAGTATGATAATGGATATGGTTTCGATATGCCTCTAACTTACGCCTTATTTACAATCATGACATACTTCTTGCGTATAATTGACATCTGGTTTTGTTTTAGCCCCGGCTTTGTGGCATTAATAGTTATAAAGAATGTTGTTTGACATTTATAGTGACTAAACGTTTCATTTTGCATTCCCGTTTTTAAAATTACAGTATACGGTGAAAATACAATCTGTGTTGGTTTTGCACGGCTGGGGAGTGAAGACCAAAAGGTGGTTGCTGGTTCAATGAAGCAACTTCTAACAGTCGACTTTGGGGCGCCATTGCATTGCTTAGTCATAGTTGGCAAAACACACCCTGTTGAAGAAGAAATGCTGGAATTTTATGGGCTTTAGAAAACGTATCACAGGATTGCAATAGCAAATACTGTATTCATGTGTTGCCTTTTGTACCATTCCATTCTTTTTGGTGACTATTTATTTAGGCATTAAGATGACTATGATGTATTTTTTGCTTTGTAAACTCTTCCCATCTTCAAGTGATTTTGACATATTTTCAAGAATTCTTAAATTTAAGATATTGTTGGTTATTTTTGTAATCTTTCACTAGTATTCTCAATACATTATATCAAAT</genome_strand>
        <mrna_strand>AGCAATTGAGCAGCTCTTAGAGGTTGAAGAAGCCCGTGGAGAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACGGTGAAAATACAATCTGTGTTGGTTTTGCACGGCTGGGGAGTGAAGACCAAAAGGTGGTTGCTGGTTCAATGAAGCAACTTCTAACAGTCGACTTTGGGGCGCCATTGCATTGCTTAGTCATAGTTGGCAAAACACACCCTGTTGAAGAAGAAATGCTGGAATTTTATGGGCTTTAGAAAACGTATCACAGGATTGCAATAGCAAATACTGTATTCATGTGTTGCCTTTTGTACCATTCCATTCTTTTTGGTGACTATTTATTTAGGCATTAAGATGACTATGATGTATTTTTTGCTTTGTAAACTCTTCCCATCTTCAAGTGATTTTGACATATTTTCAAGAATTCTTAAATTTAAGATATTGTTGGTTATTTTTGTAATCTTTCACTAGTATTCTCAATACATTATATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480909" ref_strand="+" ref_description="SGN-E480909 [cSTD-15-D22]">
      <seq>ccctcatctacctcaaatctctccttttaattaaccattttcattctccaccctaaattttctccttcaatctctccaaatttcttcttcttttgtattcttttcacctacattgcctatcaaaaagaagaagtttttcagccatatagtcccgcattgttgtatgcgggatcattaaatcaggtaaatttgttgaggtgaataaggatgggggagaaatcaaaaaaagggggttggtgtggatggattatagttttgatagtggctgctgcggctgctggagccattgtggtacttgttatgaagaagcataaagattctagctcagatgctgcttctggtgcttctgaaaagaaatatggagatgctctgaaaattgcaatgcagttctttgatgtccaaaaatctgggaaattggtaaataataagataccatggagaggcgattcagccatcaaagatggaagtcaagaaaagttagacctcagtcaaggaatgtatgatgctggcgaccacatgaaatttaatttcccaatggcttacactgccactgtgttgtcatgggccatccttgagtatggtgatcagatgaaaggtgtgggccagttggaacctgctcaagactcactcaaatggattacggactatcttatcaattgtcatccaaaagataatgttctttatattcaggtgggtgatgctaatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="154584" stop="156995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="154884" g_stop="155091" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.793"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155092" i_stop="155217" i_length="126">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155218" g_stop="155440" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="406" r_length="223" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155441" i_stop="156661" i_length="1221">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="156662" g_stop="156945" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="690" r_length="284" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E480909" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="154884" e_stop="155091"/>
          <exon e_start="155218" e_stop="155440"/>
          <exon e_start="156662" e_stop="156945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCAACTACCTCAAATCTCTCTTCTTTTAATTTAACCATTTTCATTTTCCACCCTAAATTTTCTCCATTATTTTCTTCATTCTCTCCAATCTTTTTCTTCTTTTGTGTTCTTGTTTATATTATTATTTTCACCTGCATTGCATATTAAAAGAACAAGTTTTTCAGCCATATAATCCCGCATTG-TGTGTGCGGGATCATTAAATCAGGTTTTAAAACTTACTCCTTTTCTCATTTTTTTCATATAATTGATATTTGGTTGAAAAGATCAAATTTTTATGAGATCTGAATGATAAAGATTGAATTTTTATGGTTTCTTGATGATAATAGTGCAGGTAAATTTGTTGAGGTGAATAAGGATGGGAGAGAAATCAAAAAAAGGGGGTTGGTGTGGATGGATTATAGCTTTGGTAGTGGTTGCTGCGGCTGCTGGAGCCATTGTGGTACTTTTTATGAAGAAGCATAATGGTTCTGGCTCAGATGCTGCTTCTGGTGCTTCTGAAAAGAAATATGGAGATGCTTTGAAAATTGCAATGCAGTTCTTTGATGTCCAAAAATGTAAAGTTTCTTGTGATATTTTGAAGTTGGGTTTTGCGTTTTGTGATGTTTTGTGCTTGTTATCTAGATTACCCTGTTGAAAGATTTTCATTTTTTACAAATGCAGCTTACTTGTTTGATATAGTACTGAAGAGGAGTAAATTTTTAGTTCTTTCCATTTTTTAAAAATACATTTTGTTGTGGTGTTTGTTGTTTTTTCCATAATGTTTGTTATGCTTTCATTAGTATTTTGTCATGATTTCATTTGCTTTAGTTGTTTCTTTTTCAATGTGCTTTGATATGTTTTCCTTGAGTTGAGGATTTATTGGAAACAAAATCTTTACCTCCCAGGATTACATTGTGAATGTTGTTGTTGTACATTTTGCTTCTTATACTGTTAATTATGTCCAAGATTTATGTTGTGTCATAATGGTTTGGACATTTCATGTGGATGTTGCACTTCATAATGTCTTGAATGTTCATTCCGCTATTTGCTAAAGATTTTATATTTATGTTGGTGGTGGCTAAACTCTTAGTTTAAGTGGCACTTCAATTTTTCTACTATTAAAGTCAGTAAGATGATGGATCGTCGCTGATGCCCTGTGAGGCTAAGTTGCTCGGACTCTCGAAATTGTTGCCGCACCCGTGTTGGATCCTCCAAAAATGCACTACTTTGGAGGATCCGACATGCGCCTGTCGACATTTTTGAAGAGTCCGAGCAGCATAGCTGTGAGGTATTGATGCTTCTGTAGAAGGATTAAGTTTACCTATGGGATGAGCGAGATTAATGAACTTATTAGCTTTCTAAACTCTCTGTGTCCTGAAATGTACCCTATAGGATGAGTGAGATTAGGGAACTTATTAGCTGTCTAAACTCCGTCTCCTCATAATGCTGAACAAAGTTAAGATGTGCTGGTATCATTGCCTTGTCTGCTTCAAATGTTAGACAAGGTCTCATGGTCATGATATCATGGATTTAGTGTATTGTTATCAAACTTGGCAAAGCTCTTTTCAAAAAGCAAAAAAGATCATTGAAAAACTTAACCATTATCTTAAGTACTTAAAAAATCATGACTTCATGTCTTCATCAGAGTTATTGGAGAGTGCTGGAAGGTAGTTCACCATAGAAAGCGAAGACATTGCTTGTTGTAACTTGTTTTCTTGGAAACTTTTCTAGTTTTGTTCTTTTGAATATATCTGTTGAGCTCATTTTCATAAGGGTAAAATCTCATAATGTTTCAGCTGGGAAATTGGTAAATAATAAGATATCATGGAGAGGCGATTCAGCCGTCAAAGATGGAAGTCAAGAAAAGTTAGACCTCAGTCAAGGAATGTATGATGCTGGCGACCACATGAAATTTAATTTCCCAATGGCTTACACTGCCACTGTGTTGTCATGGGCCATCCTTGAGTATGGTAATCAGATGAAGGGTGTGGGCCAGTTGGAACCTGCTGAAGACTCACTCAAATGGATTACGGACTATCTTATCAATTGTCATCCAAAAGATGATGTTCTTTATATTCAG</genome_strand>
        <mrna_strand>CCCTCATCTACCTCAAATCTCTC--CTTTTAA-TTAACCATTTTCATTCTCCACCCTAAATTTTCT-C--------CTTCAATCTCTCCAAATTTCTTCTTCTTTTGTATTCTT-TTCA-CCTA-CA--TT-GCCT--A-T-C--A--AAAAGAAGAAGTTTTTCAGCCATATAGTCCCGCATTGTTGTATGCGGGATCATTAAATCAG..............................................................................................................................GTAAATTTGTTGAGGTGAATAAGGATGGGGGAGAAATCAAAAAAAGGGGGTTGGTGTGGATGGATTATAGTTTTGATAGTGGCTGCTGCGGCTGCTGGAGCCATTGTGGTACTTGTTATGAAGAAGCATAAAGATTCTAGCTCAGATGCTGCTTCTGGTGCTTCTGAAAAGAAATATGGAGATGCTCTGAAAATTGCAATGCAGTTCTTTGATGTCCAAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGAAATTGGTAAATAATAAGATACCATGGAGAGGCGATTCAGCCATCAAAGATGGAAGTCAAGAAAAGTTAGACCTCAGTCAAGGAATGTATGATGCTGGCGACCACATGAAATTTAATTTCCCAATGGCTTACACTGCCACTGTGTTGTCATGGGCCATCCTTGAGTATGGTGATCAGATGAAAGGTGTGGGCCAGTTGGAACCTGCTCAAGACTCACTCAAATGGATTACGGACTATCTTATCAATTGTCATCCAAAAGATAATGTTCTTTATATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344529" ref_strand="+" ref_description="SGN-E344529 [cTOF-14-H16]">
      <seq>ttctctccaatctttttcttcttttgtgttcttgtttatattattattttcacctgcattgcatattaaaagaacaagtttttcagccatataatcccgcattgtgtgtgcgggatcattaaatcagtgcaggtaaatttgttgaggtgaataaggatgggagagaaatcaaaaaaagggggttggtgtggatggattatagctttggtagtggttgctgcggctgctggagccattgtggtactttttatgaagaagcataatggttctggctcagatgctgcttctggtgcttctgaaaagaaatatggagatgctttgaaaattgcaatgcagttctttgatgtccaaaaatctgggaaattggtaaataataagatatcatggagaggcgattcagccgtcaaagatggaagtcaagaaaagttagacctcagtcaaggaatgtatgatgctggcgaccacatgaaatttaatttcccaatggcttacactgccactgtgttgtcatgggccatccttgagtatggtaatcagatgaagggtgtgggccagttggaacctgctgaagactcactcaaatggattacggactatcttatcaattgtcatccaaaagatgatgttctttatattcaggtgggtgatgctgatgctgaccataaatgttgggacagaccccgagacatgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="154665" stop="156995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="154965" g_stop="155091" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155092" i_stop="155212" i_length="121">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155213" g_stop="155440" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="355" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155441" i_stop="156661" i_length="1221">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="156662" g_stop="156945" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="639" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E344529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="154965" e_stop="155091"/>
          <exon e_start="155213" e_stop="155440"/>
          <exon e_start="156662" e_stop="156945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCAATCTTTTTCTTCTTTTGTGTTCTTGTTTATATTATTATTTTCACCTGCATTGCATATTAAAAGAACAAGTTTTTCAGCCATATAATCCCGCATTGTGTGTGCGGGATCATTAAATCAGGTTTTAAAACTTACTCCTTTTCTCATTTTTTTCATATAATTGATATTTGGTTGAAAAGATCAAATTTTTATGAGATCTGAATGATAAAGATTGAATTTTTATGGTTTCTTGATGATAATAGTGCAGGTAAATTTGTTGAGGTGAATAAGGATGGGAGAGAAATCAAAAAAAGGGGGTTGGTGTGGATGGATTATAGCTTTGGTAGTGGTTGCTGCGGCTGCTGGAGCCATTGTGGTACTTTTTATGAAGAAGCATAATGGTTCTGGCTCAGATGCTGCTTCTGGTGCTTCTGAAAAGAAATATGGAGATGCTTTGAAAATTGCAATGCAGTTCTTTGATGTCCAAAAATGTAAAGTTTCTTGTGATATTTTGAAGTTGGGTTTTGCGTTTTGTGATGTTTTGTGCTTGTTATCTAGATTACCCTGTTGAAAGATTTTCATTTTTTACAAATGCAGCTTACTTGTTTGATATAGTACTGAAGAGGAGTAAATTTTTAGTTCTTTCCATTTTTTAAAAATACATTTTGTTGTGGTGTTTGTTGTTTTTTCCATAATGTTTGTTATGCTTTCATTAGTATTTTGTCATGATTTCATTTGCTTTAGTTGTTTCTTTTTCAATGTGCTTTGATATGTTTTCCTTGAGTTGAGGATTTATTGGAAACAAAATCTTTACCTCCCAGGATTACATTGTGAATGTTGTTGTTGTACATTTTGCTTCTTATACTGTTAATTATGTCCAAGATTTATGTTGTGTCATAATGGTTTGGACATTTCATGTGGATGTTGCACTTCATAATGTCTTGAATGTTCATTCCGCTATTTGCTAAAGATTTTATATTTATGTTGGTGGTGGCTAAACTCTTAGTTTAAGTGGCACTTCAATTTTTCTACTATTAAAGTCAGTAAGATGATGGATCGTCGCTGATGCCCTGTGAGGCTAAGTTGCTCGGACTCTCGAAATTGTTGCCGCACCCGTGTTGGATCCTCCAAAAATGCACTACTTTGGAGGATCCGACATGCGCCTGTCGACATTTTTGAAGAGTCCGAGCAGCATAGCTGTGAGGTATTGATGCTTCTGTAGAAGGATTAAGTTTACCTATGGGATGAGCGAGATTAATGAACTTATTAGCTTTCTAAACTCTCTGTGTCCTGAAATGTACCCTATAGGATGAGTGAGATTAGGGAACTTATTAGCTGTCTAAACTCCGTCTCCTCATAATGCTGAACAAAGTTAAGATGTGCTGGTATCATTGCCTTGTCTGCTTCAAATGTTAGACAAGGTCTCATGGTCATGATATCATGGATTTAGTGTATTGTTATCAAACTTGGCAAAGCTCTTTTCAAAAAGCAAAAAAGATCATTGAAAAACTTAACCATTATCTTAAGTACTTAAAAAATCATGACTTCATGTCTTCATCAGAGTTATTGGAGAGTGCTGGAAGGTAGTTCACCATAGAAAGCGAAGACATTGCTTGTTGTAACTTGTTTTCTTGGAAACTTTTCTAGTTTTGTTCTTTTGAATATATCTGTTGAGCTCATTTTCATAAGGGTAAAATCTCATAATGTTTCAGCTGGGAAATTGGTAAATAATAAGATATCATGGAGAGGCGATTCAGCCGTCAAAGATGGAAGTCAAGAAAAGTTAGACCTCAGTCAAGGAATGTATGATGCTGGCGACCACATGAAATTTAATTTCCCAATGGCTTACACTGCCACTGTGTTGTCATGGGCCATCCTTGAGTATGGTAATCAGATGAAGGGTGTGGGCCAGTTGGAACCTGCTGAAGACTCACTCAAATGGATTACGGACTATCTTATCAATTGTCATCCAAAAGATGATGTTCTTTATATTCAG</genome_strand>
        <mrna_strand>TTCTCTCCAATCTTTTTCTTCTTTTGTGTTCTTGTTTATATTATTATTTTCACCTGCATTGCATATTAAAAGAACAAGTTTTTCAGCCATATAATCCCGCATTGTGTGTGCGGGATCATTAAATCAG.........................................................................................................................TGCAGGTAAATTTGTTGAGGTGAATAAGGATGGGAGAGAAATCAAAAAAAGGGGGTTGGTGTGGATGGATTATAGCTTTGGTAGTGGTTGCTGCGGCTGCTGGAGCCATTGTGGTACTTTTTATGAAGAAGCATAATGGTTCTGGCTCAGATGCTGCTTCTGGTGCTTCTGAAAAGAAATATGGAGATGCTTTGAAAATTGCAATGCAGTTCTTTGATGTCCAAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGAAATTGGTAAATAATAAGATATCATGGAGAGGCGATTCAGCCGTCAAAGATGGAAGTCAAGAAAAGTTAGACCTCAGTCAAGGAATGTATGATGCTGGCGACCACATGAAATTTAATTTCCCAATGGCTTACACTGCCACTGTGTTGTCATGGGCCATCCTTGAGTATGGTAATCAGATGAAGGGTGTGGGCCAGTTGGAACCTGCTGAAGACTCACTCAAATGGATTACGGACTATCTTATCAATTGTCATCCAAAAGATGATGTTCTTTATATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474730" ref_strand="+" ref_description="SGN-E474730 [cSTB-37-D21]">
      <seq>attttctccattattttcttcttcaatctctccaaatttcttcttcttttgtattcttttcacctgcattgcctatcaaaaagaagaagtttttcagccatatagtcccgcattgttgtatgcgggatcattaaatcaggtaaatttgttgaggtgaataaagatgggagagaaatcaaaaaaagggggttggtgtggatggattatagttttgatagtggctgctgcggctgctggagccattgtggtactttttatgaagaagcataaagattctagctcagatgctgcttctggtgcttctgaaaagaaatatggagatgctctgaaaattgcaatgcagttctttgatgtccaaaaatctgggaaattggtaaataataagataccatggagaggcgattcagccatcaaagatggaagacaagaaaagttagacctcagtcaaggaatgtatgatgctggcgaccacatgaaatttaatttcccaatggcttacactgccactgtgttgtcatgggccatccttgagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0101P06-xXVp6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0101P06.1" temp_strand="+" temp_description="C04HBa0101P06.1  AC193778.1 htgs_phase:3 submitted_to_sgn_as:111606.C65 sequenced_by:sanger upload_account_name:uk 111606.assem.ace.1 from 222 to 157216">
        <position start="154643" stop="156995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155006" g_stop="155091" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="139" r_length="88" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155092" i_stop="155217" i_length="126">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155218" g_stop="155440" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="362" r_length="223" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155441" i_stop="156661" i_length="1221">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="156662" g_stop="156833" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="534" r_length="172" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0101P06.1" gen_strand="+" ref_id="SGN-E474730" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0101P06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155006" e_stop="155091"/>
          <exon e_start="155218" e_stop="155440"/>
          <exon e_start="156662" e_stop="156833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTTTCACCTGCATTGCATAT-TAAAAGAACAAGTTTTTCAGCCATATAATCCCGCATTG-TGTGTGCGGGATCATTAAATCAGGTTTTAAAACTTACTCCTTTTCTCATTTTTTTCATATAATTGATATTTGGTTGAAAAGATCAAATTTTTATGAGATCTGAATGATAAAGATTGAATTTTTATGGTTTCTTGATGATAATAGTGCAGGTAAATTTGTTGAGGTGAATAAGGATGGGAGAGAAATCAAAAAAAGGGGGTTGGTGTGGATGGATTATAGCTTTGGTAGTGGTTGCTGCGGCTGCTGGAGCCATTGTGGTACTTTTTATGAAGAAGCATAATGGTTCTGGCTCAGATGCTGCTTCTGGTGCTTCTGAAAAGAAATATGGAGATGCTTTGAAAATTGCAATGCAGTTCTTTGATGTCCAAAAATGTAAAGTTTCTTGTGATATTTTGAAGTTGGGTTTTGCGTTTTGTGATGTTTTGTGCTTGTTATCTAGATTACCCTGTTGAAAGATTTTCATTTTTTACAAATGCAGCTTACTTGTTTGATATAGTACTGAAGAGGAGTAAATTTTTAGTTCTTTCCATTTTTTAAAAATACATTTTGTTGTGGTGTTTGTTGTTTTTTCCATAATGTTTGTTATGCTTTCATTAGTATTTTGTCATGATTTCATTTGCTTTAGTTGTTTCTTTTTCAATGTGCTTTGATATGTTTTCCTTGAGTTGAGGATTTATTGGAAACAAAATCTTTACCTCCCAGGATTACATTGTGAATGTTGTTGTTGTACATTTTGCTTCTTATACTGTTAATTATGTCCAAGATTTATGTTGTGTCATAATGGTTTGGACATTTCATGTGGATGTTGCACTTCATAATGTCTTGAATGTTCATTCCGCTATTTGCTAAAGATTTTATATTTATGTTGGTGGTGGCTAAACTCTTAGTTTAAGTGGCACTTCAATTTTTCTACTATTAAAGTCAGTAAGATGATGGATCGTCGCTGATGCCCTGTGAGGCTAAGTTGCTCGGACTCTCGAAATTGTTGCCGCACCCGTGTTGGATCCTCCAAAAATGCACTACTTTGGAGGATCCGACATGCGCCTGTCGACATTTTTGAAGAGTCCGAGCAGCATAGCTGTGAGGTATTGATGCTTCTGTAGAAGGATTAAGTTTACCTATGGGATGAGCGAGATTAATGAACTTATTAGCTTTCTAAACTCTCTGTGTCCTGAAATGTACCCTATAGGATGAGTGAGATTAGGGAACTTATTAGCTGTCTAAACTCCGTCTCCTCATAATGCTGAACAAAGTTAAGATGTGCTGGTATCATTGCCTTGTCTGCTTCAAATGTTAGACAAGGTCTCATGGTCATGATATCATGGATTTAGTGTATTGTTATCAAACTTGGCAAAGCTCTTTTCAAAAAGCAAAAAAGATCATTGAAAAACTTAACCATTATCTTAAGTACTTAAAAAATCATGACTTCATGTCTTCATCAGAGTTATTGGAGAGTGCTGGAAGGTAGTTCACCATAGAAAGCGAAGACATTGCTTGTTGTAACTTGTTTTCTTGGAAACTTTTCTAGTTTTGTTCTTTTGAATATATCTGTTGAGCTCATTTTCATAAGGGTAAAATCTCATAATGTTTCAGCTGGGAAATTGGTAAATAATAAGATATCATGGAGAGGCGATTCAGCCGTCAAAGATGGAAGTCAAGAAAAGTTAGACCTCAGTCAAGGAATGTATGATGCTGGCGACCACATGAAATTTAATTTCCCAATGGCTTACACTGCCACTGTGTTGTCATGGGCCATCCTTGAGTA</genome_strand>
        <mrna_strand>TATTCTTTTCACCTGCATTGCCTATCAAAAAGAAGAAGTTTTTCAGCCATATAGTCCCGCATTGTTGTATGCGGGATCATTAAATCAG..............................................................................................................................GTAAATTTGTTGAGGTGAATAAAGATGGGAGAGAAATCAAAAAAAGGGGGTTGGTGTGGATGGATTATAGTTTTGATAGTGGCTGCTGCGGCTGCTGGAGCCATTGTGGTACTTTTTATGAAGAAGCATAAAGATTCTAGCTCAGATGCTGCTTCTGGTGCTTCTGAAAAGAAATATGGAGATGCTCTGAAAATTGCAATGCAGTTCTTTGATGTCCAAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGAAATTGGTAAATAATAAGATACCATGGAGAGGCGATTCAGCCATCAAAGATGGAAGACAAGAAAAGTTAGACCTCAGTCAAGGAATGTATGATGCTGGCGACCACATGAAATTTAATTTCCCAATGGCTTACACTGCCACTGTGTTGTCATGGGCCATCCTTGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>384</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1117" PGL_stop="73"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1117" e_stop="942"/>
            <exon e_start="498" e_stop="73"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1117" e_stop="942" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.995">
            <gDNA_intron_boundary i_start="941" i_stop="499" i_length="443"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="498" e_stop="73" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1117" stop="942"/>
              <exon start="498" stop="201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1114" stop="942"/>
              <exon start="498" stop="150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1114" stop="942"/>
              <exon start="498" stop="216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1113" stop="942"/>
              <exon start="498" stop="136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1109" stop="942"/>
              <exon start="498" stop="102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1109" stop="942"/>
              <exon start="498" stop="316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1108" stop="942"/>
              <exon start="498" stop="134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1107" stop="942"/>
              <exon start="498" stop="158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1107" stop="942"/>
              <exon start="498" stop="193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1106" stop="942"/>
              <exon start="498" stop="73"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1106" stop="942"/>
              <exon start="498" stop="132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212869" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACATTTCTCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG : GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGA</gDNA_template>
            <first_frame> Y  I  S  P  F  S  I  F  K  R  K  K  K  K  E  K  A  R  D  F  D  L  Q  A  L  F  C  I  I  N  I  P  T  F  F  F  N  G  A  S  E  T  A  L  S  I  C  S  V  F  N  Y  Y  T  A  V  H  S  R :   C  K  F  S  C  N  I  Y  N  G  E  *  M  S  A  N  N  L  A  W  I  I  I  *  R  R  N  S  S  T  F  H  H  W  F  C  S  T  K  R  *  I  E  N  N  Q  C  A  H  F  M  G  R  Q  I  L  G  S  Y  T  L  Y  R  R  F  H  R  K  I  H  L  R  H  R  R  L  R  L  R  *  A  R  M  R  R  W  Q  R  C  T  A  G  N  S  S  *  I  H  T  R  R  I  Q  R  D  G  F  L  R  R  Q  F  S  R  W  V  Q  L  T  N  A  C  G  T  T  R  W  F  W  *  Q  L  Y  K  Y  R  M  C  G  G  F   </first_frame>
            <second_frame>  T  F  L  L  F  P  F  L  R  G  R  R  R  R  R  R  L  G  I  L  I  Y  K  L  S  F  A  S  L  I  F  P  P  S  S  S  M  A  Q  V  K  L  L  C  L  F  A  L  F  L  T  I  T  Q  L  F  I  A   : G  V  N  S  A  A  T  F  T  M  V  N  K  C  Q  Q  T  I  W  P  G  L  L  S  N  A  G  I  A  P  L  S  T  T  G  F  V  L  Q  K  D  E  S  K  T  I  S  V  P  T  S  W  G  G  R  F  W  A  R  T  H  C  T  E  D  S  T  G  K  F  T  C  A  T  G  D  C  G  S  G  K  L  E  C  A  G  G  N  A  A  P  P  A  T  L  A  E  F  T  L  D  G  S  N  G  M  D  F  F  D  V  S  L  V  D  G  Y  N  L  P  M  L  V  V  P  Q  G  G  S  G  N  N  C  T  S  T  G  C  V  V  D  L  </second_frame>
            <third_frame>   H  F  S  F  F  H  F  *  E  E  E  E  E  G  E  G  *  G  F  *  S  T  S  S  L  L  H  H  *  Y  S  H  L  L  L  Q  W  R  K  *  N  C  S  V  Y  L  L  C  F  *  L  L  H  S  C  S  *  Q  :  V  *  I  Q  L  Q  H  L  Q  W  *  I  N  V  S  K  Q  F  G  L  D  Y  Y  L  T  P  E  *  L  H  F  P  P  L  V  L  F  Y  K  K  M  N  R  K  Q  S  V  C  P  L  H  G  A  A  D  S  G  L  V  H  I  V  P  K  I  P  P  E  N  S  P  A  P  P  A  I  A  A  P  V  S  S  N  A  P  V  A  T  L  H  R  R  Q  L  *  L  N  S  H  S  T  D  P  T  G  W  I  S  S  T  S  V  *  S  M  G  T  T  Y  Q  C  L  W  Y  H  K  V  V  L  V  T  I  V  Q  V  P  D  V  W  W  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1116" stop="942"/>
                    <exon start="498" stop="74"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFLLFPFLRGRRRRRRLGILIYKLSFASLIFPPSSSMAQVKLLCLFALFLTITQLFIAGVNSAATFTMVNKCQQTIWPGLLSNAGIAPLSTTGFVLQKDESKTISVPTSWGGRFWARTHCTEDSTGKFTCATGDCGSGKLECAGGNAAPPATLAEFTLDGSNGMDFFDVSLVDGYNLPMLVVPQGGSGNNCTSTGCVVDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10994" PGL_stop="10842"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10994" e_stop="10842"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="10994" e_stop="10842" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10994" stop="10842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234675" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGAGAGTATTCTTTCTACTGTAGATCAACATCCACTGTTCAATGCCATAAGCCATGAACTTTTGAGTGAAACACTAGTACTGGAGTTGTGATGTTAAAAACATTGAAAATTTTGCATAATGTTTGCTTGATAGATGACATTGGGATTGAGA</gDNA_template>
            <first_frame> G  E  S  I  L  S  T  V  D  Q  H  P  L  F  N  A  I  S  H  E  L  L  S  E  T  L  V  L  E  L  *  C  *  K  H  *  K  F  C  I  M  F  A  *  *  M  T  L  G  L  R </first_frame>
            <second_frame>  E  R  V  F  F  L  L  *  I  N  I  H  C  S  M  P  *  A  M  N  F  *  V  K  H  *  Y  W  S  C  D  V  K  N  I  E  N  F  A  *  C  L  L  D  R  *  H  W  D  *   </second_frame>
            <third_frame>   R  E  Y  S  F  Y  C  R  S  T  S  T  V  Q  C  H  K  P  *  T  F  E  *  N  T  S  T  G  V  V  M  L  K  T  L  K  I  L  H  N  V  C  L  I  D  D  I  G  I  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0101P06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15320" PGL_stop="11112"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15320" e_stop="14951"/>
            <exon e_start="14882" e_stop="14834"/>
            <exon e_start="14748" e_stop="14697"/>
            <exon e_start="12367" e_stop="12204"/>
            <exon e_start="11910" e_stop="11797"/>
            <exon e_start="11370" e_stop="11112"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.994" e_score="0.974"/>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15320" e_stop="14951" e_length="370"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14950" i_stop="14883" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14882" e_stop="14834" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="14833" i_stop="14749" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14748" e_stop="14697" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.863">
            <gDNA_intron_boundary i_start="14696" i_stop="12368" i_length="2329"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12367" e_stop="12204" e_length="164"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.930">
            <gDNA_intron_boundary i_start="12203" i_stop="11911" i_length="293"/>
          </intron>
          <exon e_serial="5" e_score="0.974">
            <gDNA_exon_boundary e_start="11910" e_stop="11797" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.967" acc_prob="0.994">
            <gDNA_intron_boundary i_start="11796" i_stop="11371" i_length="426"/>
          </intron>
          <exon e_serial="6" e_score="0.907">
            <gDNA_exon_boundary e_start="11370" e_stop="11112" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15320" stop="14951"/>
              <exon start="14882" stop="14834"/>
              <exon start="14748" stop="14697"/>
              <exon start="12367" stop="12204"/>
              <exon start="11910" stop="11797"/>
              <exon start="11370" stop="11335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15185" stop="14951"/>
              <exon start="14882" stop="14874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14852" stop="14834"/>
              <exon start="14748" stop="14697"/>
              <exon start="12367" stop="12204"/>
              <exon start="11910" stop="11797"/>
              <exon start="11370" stop="11112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAATGGCTAATGTAATGAAGCCTCTGATGAATTGGCCAAAATGGCATCACTATTTATACGTTCGCGCTTCATTCATCCACTTTGTTCAATCTCAATCTCAATCTCCACTCTTCTCAACCTGCAATGTTCGCCGACTGCCGTCGTTCACGGCATCACCTTCCGGTTACCGGCAAGCTCATTTTCGTTCCGGCGCGGCACTTAAATCACGTGAAAGTCCATTACCGTTAGATCAATCAGAGGGCGACAGCGATTCCGATGAAAAAACAAGGAAGAGTCGTAACGAGAAGAAGCGTGAAGCTCGACGCGCCGTCCGGTGGGCTATGGATTTAGCTAAGTTCTCTGCTCCTCAAATTAAGCGCATTCTCAG : AGTGGCTTCAACGGAGCAAGAGGTATACGAAGCCGTTATGCTGGCCAAG : AGACTAGGTCCTGATGTACGAGAAGGAAAGCGAAGGCAATTCAGTTACATAG : GTAGATTATTGCGAGAAGTTAAGCCTGAATTGATGGATGGTTTAATTCAGGCAACAAAAGATGGAGACCAAACTAAATTTCAGGCTTTATCTGGTTCGGAACTTTCGGCTACCGAAGATGTTGATGAGGAAGTTGAAGAGACTGAATATGAGGATGACGAAGAG : AGTTCTGAGGACAATATTGCTTTAGCCGATAGATGGTTTGATGGCTTGGTCAATAAGGACGTTGACATCTCTAAAGAAATCTATTCTCTAAGTGAGGTTGATTTTGATCGCCAG : GAGTTACGTGGTCTTGTTAGGAATGTACAATCAATACGTGAAAAAAGGAGCAAATCAGACGAGGGGGAAGGAAAAGTAAACACTGATGTTGTCCGTGCAGAAAGGTCTCTCACACGTTTCCTTCGAGACCTAGCGAAACAGCTTCACAGCTAAATAGAATATCAGATTCATCTGTGAGAGTATACTCCATGCTGGCCATCATTAGATCCTCAAAAAGTACATTAAAATGTATTTGTAATATTTCCTAGTACATGCATGT</gDNA_template>
            <first_frame> Q  K  W  L  M  *  *  S  L  *  *  I  G  Q  N  G  I  T  I  Y  T  F  A  L  H  S  S  T  L  F  N  L  N  L  N  L  H  S  S  Q  P  A  M  F  A  D  C  R  R  S  R  H  H  L  P  V  T  G  K  L  I  F  V  P  A  R  H  L  N  H  V  K  V  H  Y  R  *  I  N  Q  R  A  T  A  I  P  M  K  K  Q  G  R  V  V  T  R  R  S  V  K  L  D  A  P  S  G  G  L  W  I  *  L  S  S  L  L  L  K  L  S  A  F  S   : E  W  L  Q  R  S  K  R  Y  T  K  P  L  C  W  P  R :   D  *  V  L  M  Y  E  K  E  S  E  G  N  S  V  T  *  :  V  D  Y  C  E  K  L  S  L  N  *  W  M  V  *  F  R  Q  Q  K  M  E  T  K  L  N  F  R  L  Y  L  V  R  N  F  R  L  P  K  M  L  M  R  K  L  K  R  L  N  M  R  M  T  K  R :   V  L  R  T  I  L  L  *  P  I  D  G  L  M  A  W  S  I  R  T  L  T  S  L  K  K  S  I  L  *  V  R  L  I  L  I  A  R :   S  Y  V  V  L  L  G  M  Y  N  Q  Y  V  K  K  G  A  N  Q  T  R  G  K  E  K  *  T  L  M  L  S  V  Q  K  G  L  S  H  V  S  F  E  T  *  R  N  S  F  T  A  K  *  N  I  R  F  I  C  E  S  I  L  H  A  G  H  H  *  I  L  K  K  Y  I  K  M  Y  L  *  Y  F  L  V  H  A  C </first_frame>
            <second_frame>  K  N  G  *  C  N  E  A  S  D  E  L  A  K  M  A  S  L  F  I  R  S  R  F  I  H  P  L  C  S  I  S  I  S  I  S  T  L  L  N  L  Q  C  S  P  T  A  V  V  H  G  I  T  F  R  L  P  A  S  S  F  S  F  R  R  G  T  *  I  T  *  K  S  I  T  V  R  S  I  R  G  R  Q  R  F  R  *  K  N  K  E  E  S  *  R  E  E  A  *  S  S  T  R  R  P  V  G  Y  G  F  S  *  V  L  C  S  S  N  *  A  H  S  Q  :  S  G  F  N  G  A  R  G  I  R  S  R  Y  A  G  Q   : E  T  R  S  *  C  T  R  R  K  A  K  A  I  Q  L  H  R :   *  I  I  A  R  S  *  A  *  I  D  G  W  F  N  S  G  N  K  R  W  R  P  N  *  I  S  G  F  I  W  F  G  T  F  G  Y  R  R  C  *  *  G  S  *  R  D  *  I  *  G  *  R  R   : E  F  *  G  Q  Y  C  F  S  R  *  M  V  *  W  L  G  Q  *  G  R  *  H  L  *  R  N  L  F  S  K  *  G  *  F  *  S  P   : G  V  T  W  S  C  *  E  C  T  I  N  T  *  K  K  E  Q  I  R  R  G  G  R  K  S  K  H  *  C  C  P  C  R  K  V  S  H  T  F  P  S  R  P  S  E  T  A  S  Q  L  N  R  I  S  D  S  S  V  R  V  Y  S  M  L  A  I  I  R  S  S  K  S  T  L  K  C  I  C  N  I  S  *  Y  M  H   </second_frame>
            <third_frame>   K  M  A  N  V  M  K  P  L  M  N  W  P  K  W  H  H  Y  L  Y  V  R  A  S  F  I  H  F  V  Q  S  Q  S  Q  S  P  L  F  S  T  C  N  V  R  R  L  P  S  F  T  A  S  P  S  G  Y  R  Q  A  H  F  R  S  G  A  A  L  K  S  R  E  S  P  L  P  L  D  Q  S  E  G  D  S  D  S  D  E  K  T  R  K  S  R  N  E  K  K  R  E  A  R  R  A  V  R  W  A  M  D  L  A  K  F  S  A  P  Q  I  K  R  I  L  R :   V  A  S  T  E  Q  E  V  Y  E  A  V  M  L  A  K  :  R  L  G  P  D  V  R  E  G  K  R  R  Q  F  S  Y  I   : G  R  L  L  R  E  V  K  P  E  L  M  D  G  L  I  Q  A  T  K  D  G  D  Q  T  K  F  Q  A  L  S  G  S  E  L  S  A  T  E  D  V  D  E  E  V  E  E  T  E  Y  E  D  D  E  E  :  S  S  E  D  N  I  A  L  A  D  R  W  F  D  G  L  V  N  K  D  V  D  I  S  K  E  I  Y  S  L  S  E  V  D  F  D  R  Q  :  E  L  R  G  L  V  R  N  V  Q  S  I  R  E  K  R  S  K  S  D  E  G  E  G  K  V  N  T  D  V  V  R  A  E  R  S  L  T  R  F  L  R  D  L  A  K  Q  L  H  S  *  I  E  Y  Q  I  H  L  *  E  Y  T  P  C  W  P  S  L  D  P  Q  K  V  H  *  N  V  F  V  I  F  P  S  T  C  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15318" stop="14951"/>
                    <exon start="14882" stop="14834"/>
                    <exon start="14748" stop="14697"/>
                    <exon start="12367" stop="12204"/>
                    <exon start="11910" stop="11797"/>
                    <exon start="11370" stop="11218"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>897</number_coding_nucleotides>
                  <number_encoded_amino_acids>299</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMANVMKPLMNWPKWHHYLYVRASFIHFVQSQSQSPLFSTCNVRRLPSFTASPSGYRQAHFRSGAALKSRESPLPLDQSEGDSDSDEKTRKSRNEKKREARRAVRWAMDLAKFSAPQIKRILRVASTEQEVYEAVMLAKRLGPDVREGKRRQFSYIGRLLREVKPELMDGLIQATKDGDQTKFQALSGSELSATEDVDEEVEETEYEDDEESSEDNIALADRWFDGLVNKDVDISKEIYSLSEVDFDRQELRGLVRNVQSIREKRSKSDEGEGKVNTDVVRAERSLTRFLRDLAKQLHS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="18614" PGL_stop="17741"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18614" e_stop="17841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="18614" e_stop="17841" e_length="774"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18614" stop="17878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18613" stop="18277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18611" stop="17911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18610" stop="17903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18610" stop="17905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18601" stop="18106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18601" stop="18126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18596" stop="18107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18594" stop="18011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18590" stop="18163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18574" stop="17911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18434" stop="17879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18434" stop="17879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18232" stop="17906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18183" stop="17841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238093" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACATTCACTCACACGCTATTATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACCACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGACCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAAATTTGTTATGTGATTTGGGATTAAGATAAATAATCAGACTATGTTTTTGAAGTCTGAAAGTTCATCAAAATTGTTCA</gDNA_template>
            <first_frame> N  I  H  S  H  A  I  I  F  S  N  N  *  P  N  S  S  R  T  I  I  P  N  L  W  L  L  L  L  F  F  S  P  L  Q  L  P  A  L  N  S  P  P  L  H  H  R  G  V  L  L  A  S  S  S  G  R  S  L  F  P  P  R  T  P  L  R  R  G  L  L  L  L  L  L  V  A  L  Q  S  P  H  I  H  R  Y  T  K  F  *  G  F  N  L  E  L  I  L  M  K  L  S  L  L  T  G  N  *  P  E  F  C  I  Q  M  F  V  I  R  R  R  R  T  L  *  E  S  N  Q  R  M  L  L  F  P  I  R  K  N  V  L  I  M  I  G  T  Y  L  E  I  E  L  Q  G  L  L  I  S  Q  R  R  E  L  A  A  I  I  L  F  A  E  D  G  K  P  I  S  V  G  R  I  F  R  N  L  P  P  D  *  S  Q  N  L  D  E  H  H  L  I  S  D  R  N  S  N  L  K  F  L  I  T  I  I  R  P  V  I  C  T  V  H  V  N  V  T  L  C  I  *  Y  F  K  N  L  L  C  D  L  G  L  R  *  I  I  R  L  C  F  *  S  L  K  V  H  Q  N  C  S </first_frame>
            <second_frame>  T  F  T  H  T  L  L  F  S  P  I  T  N  Q  I  L  L  E  Q  L  F  Q  I  Y  G  F  F  F  F  S  S  L  H  F  N  Y  R  L  *  T  L  R  R  C  T  T  A  E  F  C  *  L  Q  A  A  A  V  L  C  F  R  R  V  L  H  C  G  E  D  F  Y  C  Y  Y  *  *  L  Y  N  R  L  T  Y  I  V  I  R  S  F  R  D  S  I  W  S  *  F  S  *  N  *  V  C  L  P  E  I  S  Q  N  F  A  S  R  C  S  *  F  V  G  G  G  L  Y  K  S  P  I  S  V  C  Y  S  F  R  S  G  K  T  C  *  L  *  S  E  P  I  W  K  *  N  C  K  A  C  *  F  L  N  G  G  S  S  Q  P  L  Y  C  S  P  R  M  G  N  R  S  V  L  V  E  F  F  E  I  S  R  P  I  S  H  K  I  *  M  S  T  T  *  F  L  I  V  T  Q  I  *  N  F  L  *  R  *  *  D  P  L  F  V  Q  Y  M  *  M  *  L  Y  V  Y  N  T  L  K  I  C  Y  V  I  W  D  *  D  K  *  S  D  Y  V  F  E  V  *  K  F  I  K  I  V   </second_frame>
            <third_frame>   H  S  L  T  R  Y  Y  F  L  Q  *  L  T  K  F  F  *  N  N  Y  S  K  S  M  A  S  S  S  F  L  L  S  T  S  I  T  G  S  K  L  S  A  A  A  P  P  R  S  S  V  S  F  K  Q  R  P  F  S  V  S  A  A  Y  S  T  A  E  R  T  S  T  A  T  T  S  S  S  T  I  A  S  H  T  S  L  Y  E  V  L  G  I  Q  F  G  A  N  S  H  E  I  K  S  A  Y  R  K  L  A  R  I  L  H  P  D  V  R  N  S  S  A  E  D  F  I  R  V  Q  S  A  Y  A  T  L  S  D  P  E  K  R  A  N  Y  D  R  N  L  F  G  N  R  I  A  R  P  V  D  F  S  T  A  G  A  R  S  H  Y  T  V  R  R  G  W  E  T  D  Q  C  W  *  N  F  S  K  S  P  A  R  L  V  T  K  F  R  *  A  P  L  N  F  *  S  *  L  K  S  E  I  S  Y  N  D  N  K  T  R  Y  L  Y  S  T  C  K  C  D  F  M  Y  I  I  L  *  K  F  V  M  *  F  G  I  K  I  N  N  Q  T  M  F  L  K  S  E  S  S  S  K  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18561" stop="18076"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNYSKSMASSSFLLSTSITGSKLSAAAPPRSSVSFKQRPFSVSAAYSTAERTSTATTSSSTIASHTSLYEVLGIQFGANSHEIKSAYRKLARILHPDVRNSSAEDFIRVQSAYATLSDPEKRANYDRNLFGNRIARPVDFSTAGARSHYTVRRGWETDQCW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="18613" e_stop="17889"/>
            <exon e_start="17826" e_stop="17741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.991"/>
          <exon-only e_score="0.884"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="18613" e_stop="17889" e_length="725"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17888" i_stop="17827" i_length="62"/>
          </intron>
          <exon e_serial="2" e_score="0.884">
            <gDNA_exon_boundary e_start="17826" e_stop="17741" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18613" stop="18277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18611" stop="17911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18610" stop="17903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18610" stop="17905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18601" stop="18106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18601" stop="18126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18596" stop="18107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18594" stop="18011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18590" stop="18163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18586" stop="17889"/>
              <exon start="17826" stop="17741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18574" stop="17911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18232" stop="17906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATTCACTCACACGCTATTATTTTCTCCAATAACTAACCAAATTCTTCTAGAACAATTATTCCAAATCTATGGCTTCTTCTTCTTTTCTTCTCTCCACTTCAATTACCGGCTCTAAACTCTCCGCCGCTGCACCACCGCGGAGTTCTGTTAGCTTCAAGCAGCGGCCGTTCTCTGTTTCCGCCGCGTACTCCACTGCGGAGAGGACTTCTACTGCTACTACTAGTAGCTCTACAATCGCCTCACATACATCGTTATACGAAGTTTTAGGGATTCAATTTGGAGCTAATTCTCATGAAATTAAGTCTGCTTACCGGAAATTAGCCAGAATTTTGCATCCAGATGTTCGTAATTCGTCGGCGGAGGACTTTATAAGAGTCCAATCAGCGTATGCTACTCTTTCCGATCCGGAAAAACGTGCTAATTATGATCGGAACCTATTTGGAAATAGAATTGCAAGGCCTGTTGATTTCTCAACGGCGGGAGCTCGCAGCCATTATACTGTTCGCCGAGGATGGGAAACCGATCAGTGTTGGTAGAATTTTTCGAAATCTCCCGCCCGATTAGTCACAAAATTTAGATGAGCACCACTTAATTTCTGATCGTAACTCAAATCTGAAATTTCTTATAACGATAATAAGACCCGTTATTTGTACAGTACATGTAAATGTGACTTTATGTATATAATACTTTAAAAATTTGTTATGTGATTTGGGATTAAGATAA : TATTAGAATTTACGATATACTTACCTTTTTTTTATAACCACATAAATAATCTTTAATATTTAGTCAAATACTATTACGTACGTAAT</gDNA_template>
            <first_frame> T  F  T  H  T  L  L  F  S  P  I  T  N  Q  I  L  L  E  Q  L  F  Q  I  Y  G  F  F  F  F  S  S  L  H  F  N  Y  R  L  *  T  L  R  R  C  T  T  A  E  F  C  *  L  Q  A  A  A  V  L  C  F  R  R  V  L  H  C  G  E  D  F  Y  C  Y  Y  *  *  L  Y  N  R  L  T  Y  I  V  I  R  S  F  R  D  S  I  W  S  *  F  S  *  N  *  V  C  L  P  E  I  S  Q  N  F  A  S  R  C  S  *  F  V  G  G  G  L  Y  K  S  P  I  S  V  C  Y  S  F  R  S  G  K  T  C  *  L  *  S  E  P  I  W  K  *  N  C  K  A  C  *  F  L  N  G  G  S  S  Q  P  L  Y  C  S  P  R  M  G  N  R  S  V  L  V  E  F  F  E  I  S  R  P  I  S  H  K  I  *  M  S  T  T  *  F  L  I  V  T  Q  I  *  N  F  L  *  R  *  *  D  P  L  F  V  Q  Y  M  *  M  *  L  Y  V  Y  N  T  L  K  I  C  Y  V  I  W  D  *  D  N :   I  R  I  Y  D  I  L  T  F  F  L  *  P  H  K  *  S  L  I  F  S  Q  I  L  L  R  T  *  </first_frame>
            <second_frame>  H  S  L  T  R  Y  Y  F  L  Q  *  L  T  K  F  F  *  N  N  Y  S  K  S  M  A  S  S  S  F  L  L  S  T  S  I  T  G  S  K  L  S  A  A  A  P  P  R  S  S  V  S  F  K  Q  R  P  F  S  V  S  A  A  Y  S  T  A  E  R  T  S  T  A  T  T  S  S  S  T  I  A  S  H  T  S  L  Y  E  V  L  G  I  Q  F  G  A  N  S  H  E  I  K  S  A  Y  R  K  L  A  R  I  L  H  P  D  V  R  N  S  S  A  E  D  F  I  R  V  Q  S  A  Y  A  T  L  S  D  P  E  K  R  A  N  Y  D  R  N  L  F  G  N  R  I  A  R  P  V  D  F  S  T  A  G  A  R  S  H  Y  T  V  R  R  G  W  E  T  D  Q  C  W  *  N  F  S  K  S  P  A  R  L  V  T  K  F  R  *  A  P  L  N  F  *  S  *  L  K  S  E  I  S  Y  N  D  N  K  T  R  Y  L  Y  S  T  C  K  C  D  F  M  Y  I  I  L  *  K  F  V  M  *  F  G  I  K  I   : I  L  E  F  T  I  Y  L  P  F  F  Y  N  H  I  N  N  L  *  Y  L  V  K  Y  Y  Y  V  R  N </second_frame>
            <third_frame>   I  H  S  H  A  I  I  F  S  N  N  *  P  N  S  S  R  T  I  I  P  N  L  W  L  L  L  L  F  F  S  P  L  Q  L  P  A  L  N  S  P  P  L  H  H  R  G  V  L  L  A  S  S  S  G  R  S  L  F  P  P  R  T  P  L  R  R  G  L  L  L  L  L  L  V  A  L  Q  S  P  H  I  H  R  Y  T  K  F  *  G  F  N  L  E  L  I  L  M  K  L  S  L  L  T  G  N  *  P  E  F  C  I  Q  M  F  V  I  R  R  R  R  T  L  *  E  S  N  Q  R  M  L  L  F  P  I  R  K  N  V  L  I  M  I  G  T  Y  L  E  I  E  L  Q  G  L  L  I  S  Q  R  R  E  L  A  A  I  I  L  F  A  E  D  G  K  P  I  S  V  G  R  I  F  R  N  L  P  P  D  *  S  Q  N  L  D  E  H  H  L  I  S  D  R  N  S  N  L  K  F  L  I  T  I  I  R  P  V  I  C  T  V  H  V  N  V  T  L  C  I  *  Y  F  K  N  L  L  C  D  L  G  L  R  *  :  Y  *  N  L  R  Y  T  Y  L  F  F  I  T  T  *  I  I  F  N  I  *  S  N  T  I  T  Y  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18561" stop="18076"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNYSKSMASSSFLLSTSITGSKLSAAAPPRSSVSFKQRPFSVSAAYSTAERTSTATTSSSTIASHTSLYEVLGIQFGANSHEIKSAYRKLARILHPDVRNSSAEDFIRVQSAYATLSDPEKRANYDRNLFGNRIARPVDFSTAGARSHYTVRRGWETDQCW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="17906" PGL_stop="18583"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17906" e_stop="18583"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="17906" e_stop="18583" e_length="678"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17906" stop="18583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695415" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACATAACAAATTTTTAAAGTATTATATACATAAAGTCACATTTACATGTACTGTACAAATAACGGGTCTTATTATCGTTATAAGAAATTTCAGATTTGAGTTACGATCAGAAATTAAGTGGTGCTCATCTAAATTTTGTGACTAATCGGGCGGGAGATTTCGAAAAATTCTACCAACACTGATCGGTTTCCCATCCTCGGCGAACAGTATAATGGCTGCGAGCTCCCGCCGTTGAGAAATCAACAGGCCTTGCAATTCTATTTCCAAATAGGTTCCGATCATAATTAGCACGTTTTTCCGGATCGGAAAGAGTAGCATACGCTGATTGGACTCTTATAAAGTCCTCCGCCGACGAATTACGAACATCTGGATGCAAAATTCTGGCTAATTTCCGGTAAGCAGACTTAATTTCATGAGAATTAGCTCCAAATTGAATCCCTAAAACTTCGTATAACGATGTATGTGAGGCGATTGTAGAGCTACTAGTAGTAGCAGTAGAAGTCCTCTCCGCAGTGGAGTACGCGGCGGAAACAGAGAACGGCCGCTGCTTGAAGCTAACAGAACTCCGCGGTGGTGCAGCGGCGGAGAGTTTAGAGCCGGTAATTGAAGTGGAGAGAAGAAAAGAAGAAGAAGCCATAGATTTGGAATAATTGTTCTAGAAGAATTTGGTTAGTTAT</gDNA_template>
            <first_frame> H  I  T  N  F  *  S  I  I  Y  I  K  S  H  L  H  V  L  Y  K  *  R  V  L  L  S  L  *  E  I  S  D  L  S  Y  D  Q  K  L  S  G  A  H  L  N  F  V  T  N  R  A  G  D  F  E  K  F  Y  Q  H  *  S  V  S  H  P  R  R  T  V  *  W  L  R  A  P  A  V  E  K  S  T  G  L  A  I  L  F  P  N  R  F  R  S  *  L  A  R  F  S  G  S  E  R  V  A  Y  A  D  W  T  L  I  K  S  S  A  D  E  L  R  T  S  G  C  K  I  L  A  N  F  R  *  A  D  L  I  S  *  E  L  A  P  N  *  I  P  K  T  S  Y  N  D  V  C  E  A  I  V  E  L  L  V  V  A  V  E  V  L  S  A  V  E  Y  A  A  E  T  E  N  G  R  C  L  K  L  T  E  L  R  G  G  A  A  A  E  S  L  E  P  V  I  E  V  E  R  R  K  E  E  E  A  I  D  L  E  *  L  F  *  K  N  L  V  S  Y </first_frame>
            <second_frame>  T  *  Q  I  F  K  V  L  Y  T  *  S  H  I  Y  M  Y  C  T  N  N  G  S  Y  Y  R  Y  K  K  F  Q  I  *  V  T  I  R  N  *  V  V  L  I  *  I  L  *  L  I  G  R  E  I  S  K  N  S  T  N  T  D  R  F  P  I  L  G  E  Q  Y  N  G  C  E  L  P  P  L  R  N  Q  Q  A  L  Q  F  Y  F  Q  I  G  S  D  H  N  *  H  V  F  P  D  R  K  E  *  H  T  L  I  G  L  L  *  S  P  P  P  T  N  Y  E  H  L  D  A  K  F  W  L  I  S  G  K  Q  T  *  F  H  E  N  *  L  Q  I  E  S  L  K  L  R  I  T  M  Y  V  R  R  L  *  S  Y  *  *  *  Q  *  K  S  S  P  Q  W  S  T  R  R  K  Q  R  T  A  A  A  *  S  *  Q  N  S  A  V  V  Q  R  R  R  V  *  S  R  *  L  K  W  R  E  E  K  K  K  K  P  *  I  W  N  N  C  S  R  R  I  W  L  V   </second_frame>
            <third_frame>   H  N  K  F  L  K  Y  Y  I  H  K  V  T  F  T  C  T  V  Q  I  T  G  L  I  I  V  I  R  N  F  R  F  E  L  R  S  E  I  K  W  C  S  S  K  F  C  D  *  S  G  G  R  F  R  K  I  L  P  T  L  I  G  F  P  S  S  A  N  S  I  M  A  A  S  S  R  R  *  E  I  N  R  P  C  N  S  I  S  K  *  V  P  I  I  I  S  T  F  F  R  I  G  K  S  S  I  R  *  L  D  S  Y  K  V  L  R  R  R  I  T  N  I  W  M  Q  N  S  G  *  F  P  V  S  R  L  N  F  M  R  I  S  S  K  L  N  P  *  N  F  V  *  R  C  M  *  G  D  C  R  A  T  S  S  S  S  R  S  P  L  R  S  G  V  R  G  G  N  R  E  R  P  L  L  E  A  N  R  T  P  R  W  C  S  G  G  E  F  R  A  G  N  *  S  G  E  K  K  R  R  R  S  H  R  F  G  I  I  V  L  E  E  F  G  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18341" stop="18556"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPKTSYNDVCEAIVELLVVAVEVLSAVEYAAETENGRCLKLTELRGGAAAESLEPVIEVERRKEEEAIDLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="25711" PGL_stop="24013"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25711" e_stop="25613"/>
            <exon e_start="25502" e_stop="25393"/>
            <exon e_start="24951" e_stop="24681"/>
            <exon e_start="24589" e_stop="24487"/>
            <exon e_start="24213" e_stop="24013"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.865" e_score="1.000"/>
          <exon-intron don_prob="0.501" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25711" e_stop="25613" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25612" i_stop="25503" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25502" e_stop="25393" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.865">
            <gDNA_intron_boundary i_start="25392" i_stop="24952" i_length="441"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24951" e_stop="24681" e_length="271"/>
          </exon>
          <intron i_serial="3" don_prob="0.501" acc_prob="0.985">
            <gDNA_intron_boundary i_start="24680" i_stop="24590" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24589" e_stop="24487" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.984">
            <gDNA_intron_boundary i_start="24486" i_stop="24214" i_length="273"/>
          </intron>
          <exon e_serial="5" e_score="0.965">
            <gDNA_exon_boundary e_start="24213" e_stop="24013" e_length="201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25711" stop="25613"/>
              <exon start="25502" stop="25393"/>
              <exon start="24951" stop="24681"/>
              <exon start="24589" stop="24487"/>
              <exon start="24213" stop="24013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320243" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTACAATTTCTACTTTTGTTAGTGTCCATTCAAAACTACTTCACTTTGATTGGGTTGTTTCAATTTCCTCTAATGCACTCATTGGAGATCCTAAAGAG : GTTATTATGATCAATAATCAGTTTCCAGGGCCCCTTTTGAACACAACAACAAATGATGTGGTCATTGTCAATGTTTATAACAACTTGACTGAACCTTTCCTCATGACATG : GAATGGAGTGCAATTAAGGAGGAATTCATGGCAAGATGGAGTTGAAGGAACCAATTGTCCAATTATGCCTGGAAAAAATTGGACATACAAATTTCAGATGAAAGATCAGATTGGAAGTTTCTTCTATTTTCCTTCACTCTTTTTCCAGAAAGCTGCTGGAGGCTATGGTCCTATTCGAATCAACAACGTTGAGACTGTTCCTCTTCCATTTACGCGTCCTGATTATGAATATGATATACTAATTGGAGATTGGTATTTTGATGAGTATAAG : GACTTGAGAATTTCTCTAGAAGATGGATGCAAAATGCCTTTTCCAGATGCCATTCTCATCAATGGTATGAGATCTGATCAAGCTACCTTTGAGTTTCAACCCG : GGGCTACCTATAGATTGAGAATCTCGAACATAGGATTAAAAACAACCTTAAATTTCAAAATCCAGGATCATGAAATGCTTTTGGTGGAGACTGAAGGAGCCTACACTTCAAAAAAGTACCACCAAAGTCTAGACATCCATGTTGGTCAATCTTATTCTGTTCTTGTTACTGCAAAGAACCACAGCTATAATAGCTCGTATC</gDNA_template>
            <first_frame> F  T  I  S  T  F  V  S  V  H  S  K  L  L  H  F  D  W  V  V  S  I  S  S  N  A  L  I  G  D  P  K  E  :  V  I  M  I  N  N  Q  F  P  G  P  L  L  N  T  T  T  N  D  V  V  I  V  N  V  Y  N  N  L  T  E  P  F  L  M  T  W :   N  G  V  Q  L  R  R  N  S  W  Q  D  G  V  E  G  T  N  C  P  I  M  P  G  K  N  W  T  Y  K  F  Q  M  K  D  Q  I  G  S  F  F  Y  F  P  S  L  F  F  Q  K  A  A  G  G  Y  G  P  I  R  I  N  N  V  E  T  V  P  L  P  F  T  R  P  D  Y  E  Y  D  I  L  I  G  D  W  Y  F  D  E  Y  K  :  D  L  R  I  S  L  E  D  G  C  K  M  P  F  P  D  A  I  L  I  N  G  M  R  S  D  Q  A  T  F  E  F  Q  P   : G  A  T  Y  R  L  R  I  S  N  I  G  L  K  T  T  L  N  F  K  I  Q  D  H  E  M  L  L  V  E  T  E  G  A  Y  T  S  K  K  Y  H  Q  S  L  D  I  H  V  G  Q  S  Y  S  V  L  V  T  A  K  N  H  S  Y  N  S  S  Y  </first_frame>
            <second_frame>  L  Q  F  L  L  L  L  V  S  I  Q  N  Y  F  T  L  I  G  L  F  Q  F  P  L  M  H  S  L  E  I  L  K  R :   L  L  *  S  I  I  S  F  Q  G  P  F  *  T  Q  Q  Q  M  M  W  S  L  S  M  F  I  T  T  *  L  N  L  S  S  *  H   : G  M  E  C  N  *  G  G  I  H  G  K  M  E  L  K  E  P  I  V  Q  L  C  L  E  K  I  G  H  T  N  F  R  *  K  I  R  L  E  V  S  S  I  F  L  H  S  F  S  R  K  L  L  E  A  M  V  L  F  E  S  T  T  L  R  L  F  L  F  H  L  R  V  L  I  M  N  M  I  Y  *  L  E  I  G  I  L  M  S  I  R :   T  *  E  F  L  *  K  M  D  A  K  C  L  F  Q  M  P  F  S  S  M  V  *  D  L  I  K  L  P  L  S  F  N  P  :  G  L  P  I  D  *  E  S  R  T  *  D  *  K  Q  P  *  I  S  K  S  R  I  M  K  C  F  W  W  R  L  K  E  P  T  L  Q  K  S  T  T  K  V  *  T  S  M  L  V  N  L  I  L  F  L  L  L  Q  R  T  T  A  I  I  A  R  I </second_frame>
            <third_frame>   Y  N  F  Y  F  C  *  C  P  F  K  T  T  S  L  *  L  G  C  F  N  F  L  *  C  T  H  W  R  S  *  R   : G  Y  Y  D  Q  *  S  V  S  R  A  P  F  E  H  N  N  K  *  C  G  H  C  Q  C  L  *  Q  L  D  *  T  F  P  H  D  M  :  E  W  S  A  I  K  E  E  F  M  A  R  W  S  *  R  N  Q  L  S  N  Y  A  W  K  K  L  D  I  Q  I  S  D  E  R  S  D  W  K  F  L  L  F  S  F  T  L  F  P  E  S  C  W  R  L  W  S  Y  S  N  Q  Q  R  *  D  C  S  S  S  I  Y  A  S  *  L  *  I  *  Y  T  N  W  R  L  V  F  *  *  V  *   : G  L  E  N  F  S  R  R  W  M  Q  N  A  F  S  R  C  H  S  H  Q  W  Y  E  I  *  S  S  Y  L  *  V  S  T  R :   G  Y  L  *  I  E  N  L  E  H  R  I  K  N  N  L  K  F  Q  N  P  G  S  *  N  A  F  G  G  D  *  R  S  L  H  F  K  K  V  P  P  K  S  R  H  P  C  W  S  I  L  F  C  S  C  Y  C  K  E  P  Q  L  *  *  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25711" stop="25613"/>
                    <exon start="25502" stop="25393"/>
                    <exon start="24951" stop="24681"/>
                    <exon start="24589" stop="24487"/>
                    <exon start="24213" stop="24014"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTISTFVSVHSKLLHFDWVVSISSNALIGDPKEVIMINNQFPGPLLNTTTNDVVIVNVYNNLTEPFLMTWNGVQLRRNSWQDGVEGTNCPIMPGKNWTYKFQMKDQIGSFFYFPSLFFQKAAGGYGPIRINNVETVPLPFTRPDYEYDILIGDWYFDEYKDLRISLEDGCKMPFPDAILINGMRSDQATFEFQPGATYRLRISNIGLKTTLNFKIQDHEMLLVETEGAYTSKKYHQSLDIHVGQSYSVLVTAKNHSYNSSY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24943" e_stop="24681"/>
            <exon e_start="24589" e_stop="24316"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.501" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24943" e_stop="24681" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.501" acc_prob="0.985">
            <gDNA_intron_boundary i_start="24680" i_stop="24590" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="24589" e_stop="24316" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24943" stop="24681"/>
              <exon start="24589" stop="24316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319299" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAATTAAGGAGGAATTCATGGCAAGATGGAGTTGAAGGAACCAATTGTCCAATTATGCCTGGAAAAAATTGGACATACAAATTTCAGATGAAAGATCAGATTGGAAGTTTCTTCTATTTTCCTTCACTCTTTTTCCAGAAAGCTGCTGGAGGCTATGGTCCTATTCGAATCAACAACGTTGAGACTGTTCCTCTTCCATTTACGCGTCCTGATTATGAATATGATATACTAATTGGAGATTGGTATTTTGATGAGTATAAG : GACTTGAGAATTTCTCTAGAAGATGGATGCAAAATGCCTTTTCCAGATGCCATTCTCATCAATGGTATGAGATCTGATCAAGCTACCTTTGAGTTTCAACCCGGTAAGTTTACGTTTGTATAGAGAATTACCAACAGTTGTAAGATCTGCGTACACTCTACTCTTCTCAGACCCCACCTAGTGAGATTTCACCGGGTATGTTGTTGTGGGACCGAGGTGTAGTTGTGCGATTTTTAAATCCTTTTGACATAAACAAAGCATTTTGTGTAGTCAT</gDNA_template>
            <first_frame> C  N  *  G  G  I  H  G  K  M  E  L  K  E  P  I  V  Q  L  C  L  E  K  I  G  H  T  N  F  R  *  K  I  R  L  E  V  S  S  I  F  L  H  S  F  S  R  K  L  L  E  A  M  V  L  F  E  S  T  T  L  R  L  F  L  F  H  L  R  V  L  I  M  N  M  I  Y  *  L  E  I  G  I  L  M  S  I  R :   T  *  E  F  L  *  K  M  D  A  K  C  L  F  Q  M  P  F  S  S  M  V  *  D  L  I  K  L  P  L  S  F  N  P  V  S  L  R  L  Y  R  E  L  P  T  V  V  R  S  A  Y  T  L  L  F  S  D  P  T  *  *  D  F  T  G  Y  V  V  V  G  P  R  C  S  C  A  I  F  K  S  F  *  H  K  Q  S  I  L  C  S  H </first_frame>
            <second_frame>  A  I  K  E  E  F  M  A  R  W  S  *  R  N  Q  L  S  N  Y  A  W  K  K  L  D  I  Q  I  S  D  E  R  S  D  W  K  F  L  L  F  S  F  T  L  F  P  E  S  C  W  R  L  W  S  Y  S  N  Q  Q  R  *  D  C  S  S  S  I  Y  A  S  *  L  *  I  *  Y  T  N  W  R  L  V  F  *  *  V  *   : G  L  E  N  F  S  R  R  W  M  Q  N  A  F  S  R  C  H  S  H  Q  W  Y  E  I  *  S  S  Y  L  *  V  S  T  R  *  V  Y  V  C  I  E  N  Y  Q  Q  L  *  D  L  R  T  L  Y  S  S  Q  T  P  P  S  E  I  S  P  G  M  L  L  W  D  R  G  V  V  V  R  F  L  N  P  F  D  I  N  K  A  F  C  V  V   </second_frame>
            <third_frame>   Q  L  R  R  N  S  W  Q  D  G  V  E  G  T  N  C  P  I  M  P  G  K  N  W  T  Y  K  F  Q  M  K  D  Q  I  G  S  F  F  Y  F  P  S  L  F  F  Q  K  A  A  G  G  Y  G  P  I  R  I  N  N  V  E  T  V  P  L  P  F  T  R  P  D  Y  E  Y  D  I  L  I  G  D  W  Y  F  D  E  Y  K  :  D  L  R  I  S  L  E  D  G  C  K  M  P  F  P  D  A  I  L  I  N  G  M  R  S  D  Q  A  T  F  E  F  Q  P  G  K  F  T  F  V  *  R  I  T  N  S  C  K  I  C  V  H  S  T  L  L  R  P  H  L  V  R  F  H  R  V  C  C  C  G  T  E  V  *  L  C  D  F  *  I  L  L  T  *  T  K  H  F  V  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24941" stop="24681"/>
                    <exon start="24589" stop="24467"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLRRNSWQDGVEGTNCPIMPGKNWTYKFQMKDQIGSFFYFPSLFFQKAAGGYGPIRINNVETVPLPFTRPDYEYDILIGDWYFDEYKDLRISLEDGCKMPFPDAILINGMRSDQATFEFQPGKFTFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="30364" PGL_stop="26376"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30364" e_stop="30345"/>
            <exon e_start="29752" e_stop="29659"/>
            <exon e_start="29469" e_stop="29372"/>
            <exon e_start="29126" e_stop="29057"/>
            <exon e_start="28253" e_stop="28150"/>
            <exon e_start="28056" e_stop="27940"/>
            <exon e_start="27803" e_stop="27727"/>
            <exon e_start="27611" e_stop="27567"/>
            <exon e_start="27109" e_stop="26376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.993" e_score="0.900"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="0.957"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="0.986"/>
          <exon-intron don_prob="0.890" acc_prob="0.999" e_score="0.971"/>
          <exon-intron don_prob="0.399" acc_prob="0.969" e_score="0.981"/>
          <exon-intron don_prob="0.972" acc_prob="0.999" e_score="0.974"/>
          <exon-intron don_prob="0.106" acc_prob="0.990" e_score="0.948"/>
          <exon-intron don_prob="0.962" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="30364" e_stop="30345" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.993">
            <gDNA_intron_boundary i_start="30344" i_stop="29753" i_length="592"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="29752" e_stop="29659" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="29658" i_stop="29470" i_length="189"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="29469" e_stop="29372" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="29371" i_stop="29127" i_length="245"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="29126" e_stop="29057" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.890" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29056" i_stop="28254" i_length="803"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="28253" e_stop="28150" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.399" acc_prob="0.969">
            <gDNA_intron_boundary i_start="28149" i_stop="28057" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="0.974">
            <gDNA_exon_boundary e_start="28056" e_stop="27940" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="0.972" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27939" i_stop="27804" i_length="136"/>
          </intron>
          <exon e_serial="7" e_score="0.948">
            <gDNA_exon_boundary e_start="27803" e_stop="27727" e_length="77"/>
          </exon>
          <intron i_serial="7" don_prob="0.106" acc_prob="0.990">
            <gDNA_intron_boundary i_start="27726" i_stop="27612" i_length="115"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="27611" e_stop="27567" e_length="45"/>
          </exon>
          <intron i_serial="8" don_prob="0.962" acc_prob="0.972">
            <gDNA_intron_boundary i_start="27566" i_stop="27110" i_length="457"/>
          </intron>
          <exon e_serial="9" e_score="0.937">
            <gDNA_exon_boundary e_start="27109" e_stop="26376" e_length="734"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30364" stop="30345"/>
              <exon start="29752" stop="29659"/>
              <exon start="29469" stop="29372"/>
              <exon start="29126" stop="29057"/>
              <exon start="28253" stop="28150"/>
              <exon start="28056" stop="27989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29713" stop="29659"/>
              <exon start="29469" stop="29372"/>
              <exon start="29126" stop="29057"/>
              <exon start="28253" stop="28150"/>
              <exon start="28056" stop="27940"/>
              <exon start="27803" stop="27727"/>
              <exon start="27611" stop="27567"/>
              <exon start="27109" stop="26976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29445" stop="29372"/>
              <exon start="29126" stop="29057"/>
              <exon start="28253" stop="28150"/>
              <exon start="28056" stop="27940"/>
              <exon start="27803" stop="27727"/>
              <exon start="27611" stop="27567"/>
              <exon start="27109" stop="26906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27596" stop="27567"/>
              <exon start="27109" stop="26376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419506" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27047" stop="26382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483476" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26956" stop="26445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26955" stop="26433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26955" stop="26433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26955" stop="26443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26955" stop="26460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26930" stop="26433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26928" stop="26433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26857" stop="26478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586490" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTGGCTCAGCATACTTCT : GAATTATATCATGAAATGCATGCACTGGACAGATTCGAACAGGATTATCGGAGGAAACTTGAGGAATTAGATTCCCTAAATCTACCTCGAAAAG : GGGAAGGTCTCATGATGTTACAGAGTGAGCTAAAACATCAAAGAAAGATTGCGAGGAGCTTGAAAAAGAAATCTCTTTGGGCTAAGGGTTTGGAGGAG : GTTGTGGAGAAGCTTGTTGACATTGTTACGTATATACATCAAGCAATTGTGGAAGCATTTGGGGACAACG : GATTGACATCTGCTGTCAAGGAGCCTGTGAAGAAACAAGAAAGATTGGGAGTAGCTGGTCTGGCTTTACACTATGCTAACTTAGTTACTCAAATTGATAACATT : GCTTCACGGCCCACCGCTCTTCCCCCTAACATGAGGGATGGATTATATAATGGATTGCCTCCTTCCATAAAAACGGCCCTTCGTTCACGTCTGCAGGCGGTTGATGCAAAGGAAGAG : CTCACAATTCCGCAGATTAAAGCAGAAATGGAAAAAACTCTTCACTGGCTTGTCCCAGTCGCTGCAGATACTACGAA : AGCACACCAAGGCTTTGGATGGGTTGGAGAGTGGGCCAACACCGG : AAGCGAGTTTGGCAAGAAGAACCCTCCACAAGTTTCCCTCATTCGACTGCAGACACTCTACCATGCTGACAAACAGAAAATGGACTACCATGTCCTTGAACTAGTGACATGGCTTCACCGTTTGATCAGCCTGGTAAGATATAATGGGCCCAAGGCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTATATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCATGGATGACAGGGAATGATGTTTATTTGGGCATTTTGCAGCCAACTTACTATGAATGTTTTGGTAATATGAAATGTAACCATTAGG</gDNA_template>
            <first_frame> L  W  L  S  I  L  L :   N  Y  I  M  K  C  M  H  W  T  D  S  N  R  I  I  G  G  N  L  R  N  *  I  P  *  I  Y  L  E  K  :  G  K  V  S  *  C  Y  R  V  S  *  N  I  K  E  R  L  R  G  A  *  K  R  N  L  F  G  L  R  V  W  R  R :   L  W  R  S  L  L  T  L  L  R  I  Y  I  K  Q  L  W  K  H  L  G  T  T  :  D  *  H  L  L  S  R  S  L  *  R  N  K  K  D  W  E  *  L  V  W  L  Y  T  M  L  T  *  L  L  K  L  I  T  L :   L  H  G  P  P  L  F  P  L  T  *  G  M  D  Y  I  M  D  C  L  L  P  *  K  R  P  F  V  H  V  C  R  R  L  M  Q  R  K  S :   S  Q  F  R  R  L  K  Q  K  W  K  K  L  F  T  G  L  S  Q  S  L  Q  I  L  R   : K  H  T  K  A  L  D  G  L  E  S  G  P  T  P   : E  A  S  L  A  R  R  T  L  H  K  F  P  S  F  D  C  R  H  S  T  M  L  T  N  R  K  W  T  T  M  S  L  N  *  *  H  G  F  T  V  *  S  A  W  *  D  I  M  G  P  R  L  F  Q  D  D  H  Q  H  A  K  D  L  I  C  R  L  S  *  *  *  T  P  T  Q  K  H  L  R  F  R  F  L  S  K  I  G  L  Y  *  R  K  *  *  N  R  N  V  W  F  L  E  E  A  R  V  R  S  F  C  C  P  R  I  G  K  R  C  G  R  *  V  E  A  W  V  T  P  L  V  P  T  F  N  I  Q  R  L  L  F  W  I  Y  *  M  A  Y  I  S  I  L  S  C  *  R  E  I  S  S  K  K  K  V  H  F  F  V  F  L  I  L  S  S  L  L  L  W  N  *  S  L  F  V  Y  S  L  S  I  I  W  *  L  G  K  M  L  Y  C  S  I  L  L  S  P  K  Y  I  *  I  L  V  E  L  N  V  H  G  *  Q  G  M  M  F  I  W  A  F  C  S  Q  L  T  M  N  V  L  V  I  *  N  V  T  I  R </first_frame>
            <second_frame>  S  G  S  A  Y  F   : *  I  I  S  *  N  A  C  T  G  Q  I  R  T  G  L  S  E  E  T  *  G  I  R  F  P  K  S  T  S  K  R :   G  R  S  H  D  V  T  E  *  A  K  T  S  K  K  D  C  E  E  L  E  K  E  I  S  L  G  *  G  F  G  G   : G  C  G  E  A  C  *  H  C  Y  V  Y  T  S  S  N  C  G  S  I  W  G  Q  R :   I  D  I  C  C  Q  G  A  C  E  E  T  R  K  I  G  S  S  W  S  G  F  T  L  C  *  L  S  Y  S  N  *  *  H   : C  F  T  A  H  R  S  S  P  *  H  E  G  W  I  I  *  W  I  A  S  F  H  K  N  G  P  S  F  T  S  A  G  G  *  C  K  G  R   : A  H  N  S  A  D  *  S  R  N  G  K  N  S  S  L  A  C  P  S  R  C  R  Y  Y  E  :  S  T  P  R  L  W  M  G  W  R  V  G  Q  H  R  :  K  R  V  W  Q  E  E  P  S  T  S  F  P  H  S  T  A  D  T  L  P  C  *  Q  T  E  N  G  L  P  C  P  *  T  S  D  M  A  S  P  F  D  Q  P  G  K  I  *  W  A  Q  G  F  S  R  T  I  T  N  T  Q  R  T  *  S  A  D  *  V  D  D  E  H  Q  L  K  N  T  *  D  S  D  F  S  R  R  *  D  F  T  R  E  S  D  E  T  E  M  F  G  S  W  K  K  Q  E  S  G  V  S  V  A  Q  E  S  A  K  G  V  G  A  K  *  K  H  G  *  L  P  S  Y  R  L  S  T  S  K  G  Y  C  F  G  Y  I  R  W  L  T  L  A  F  *  V  A  K  E  R  S  Q  A  K  K  R  F  I  F  L  F  S  *  F  L  A  P  S  S  Y  G  T  K  A  S  L  Y  I  V  S  P  S  Y  G  D  W  E  K  C  Y  T  V  A  Y  Y  Y  R  Q  N  T  F  R  F  *  W  N  *  M  F  M  D  D  R  E  *  C  L  F  G  H  F  A  A  N  L  L  *  M  F  W  *  Y  E  M  *  P  L   </second_frame>
            <third_frame>   L  A  Q  H  T  S  :  E  L  Y  H  E  M  H  A  L  D  R  F  E  Q  D  Y  R  R  K  L  E  E  L  D  S  L  N  L  P  R  K   : G  E  G  L  M  M  L  Q  S  E  L  K  H  Q  R  K  I  A  R  S  L  K  K  K  S  L  W  A  K  G  L  E  E  :  V  V  E  K  L  V  D  I  V  T  Y  I  H  Q  A  I  V  E  A  F  G  D  N   : G  L  T  S  A  V  K  E  P  V  K  K  Q  E  R  L  G  V  A  G  L  A  L  H  Y  A  N  L  V  T  Q  I  D  N  I  :  A  S  R  P  T  A  L  P  P  N  M  R  D  G  L  Y  N  G  L  P  P  S  I  K  T  A  L  R  S  R  L  Q  A  V  D  A  K  E  E  :  L  T  I  P  Q  I  K  A  E  M  E  K  T  L  H  W  L  V  P  V  A  A  D  T  T  K :   A  H  Q  G  F  G  W  V  G  E  W  A  N  T  G :   S  E  F  G  K  K  N  P  P  Q  V  S  L  I  R  L  Q  T  L  Y  H  A  D  K  Q  K  M  D  Y  H  V  L  E  L  V  T  W  L  H  R  L  I  S  L  V  R  Y  N  G  P  K  A  F  P  G  R  S  P  T  R  K  G  L  N  L  Q  T  E  L  M  M  N  T  N  S  K  T  P  K  I  Q  I  S  L  E  D  R  T  L  L  E  K  V  M  K  Q  K  C  L  V  P  G  R  S  K  S  Q  E  F  L  L  P  K  N  R  Q  K  V  W  A  L  S  R  S  M  G  N  S  P  R  T  D  F  Q  H  P  K  A  T  V  L  D  I  L  D  G  L  H  *  H  F  E  L  L  K  R  D  L  K  Q  K  K  G  S  F  F  C  F  L  D  S  *  L  P  P  P  M  E  L  K  P  L  C  I  *  S  L  H  H  M  V  I  G  K  N  V  I  L  *  H  I  I  I  A  K  I  H  L  D  S  S  G  I  E  C  S  W  M  T  G  N  D  V  Y  L  G  I  L  Q  P  T  Y  Y  E  C  F  G  N  M  K  C  N  H  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30362" stop="30345"/>
                    <exon start="29752" stop="29659"/>
                    <exon start="29469" stop="29372"/>
                    <exon start="29126" stop="29057"/>
                    <exon start="28253" stop="28150"/>
                    <exon start="28056" stop="27940"/>
                    <exon start="27803" stop="27727"/>
                    <exon start="27611" stop="27567"/>
                    <exon start="27109" stop="26662"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1068</number_coding_nucleotides>
                  <number_encoded_amino_acids>356</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAQHTSELYHEMHALDRFEQDYRRKLEELDSLNLPRKGEGLMMLQSELKHQRKIARSLKKKSLWAKGLEEVVEKLVDIVTYIHQAIVEAFGDNGLTSAVKEPVKKQERLGVAGLALHYANLVTQIDNIASRPTALPPNMRDGLYNGLPPSIKTALRSRLQAVDAKEELTIPQIKAEMEKTLHWLVPVAADTTKAHQGFGWVGEWANTGSEFGKKNPPQVSLIRLQTLYHADKQKMDYHVLELVTWLHRLISLVRYNGPKAFPGRSPTRKGLNLQTELMMNTNSKTPKIQISLEDRTLLEKVMKQKCLVPGRSKSQEFLLPKNRQKVWALSRSMGNSPRTDFQHPKATVLDILDGLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29127" e_stop="29057"/>
            <exon e_start="28253" e_stop="28150"/>
            <exon e_start="28056" e_stop="27940"/>
            <exon e_start="27803" e_stop="27727"/>
            <exon e_start="27611" e_stop="27567"/>
            <exon e_start="27109" e_stop="26376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.890" acc_prob="0.999" e_score="0.972"/>
          <exon-intron don_prob="0.399" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.999" e_score="0.991"/>
          <exon-intron don_prob="0.106" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="29127" e_stop="29057" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.890" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29056" i_stop="28254" i_length="803"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28253" e_stop="28150" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.399" acc_prob="0.969">
            <gDNA_intron_boundary i_start="28149" i_stop="28057" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="28056" e_stop="27940" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27939" i_stop="27804" i_length="136"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27803" e_stop="27727" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.106" acc_prob="0.990">
            <gDNA_intron_boundary i_start="27726" i_stop="27612" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27611" e_stop="27567" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.962" acc_prob="0.972">
            <gDNA_intron_boundary i_start="27566" i_stop="27110" i_length="457"/>
          </intron>
          <exon e_serial="6" e_score="0.937">
            <gDNA_exon_boundary e_start="27109" e_stop="26376" e_length="734"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29127" stop="29057"/>
              <exon start="28253" stop="28150"/>
              <exon start="28056" stop="27940"/>
              <exon start="27803" stop="27727"/>
              <exon start="27611" stop="27567"/>
              <exon start="27109" stop="26609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27596" stop="27567"/>
              <exon start="27109" stop="26376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419506" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27047" stop="26382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483476" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26956" stop="26445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26955" stop="26433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26955" stop="26433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26955" stop="26443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26955" stop="26460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26930" stop="26433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26928" stop="26433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26857" stop="26478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586490" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTGTGGAGAAGCTTGTTGACATTGTTACGTATATACATCAAGCAATTGTGGAAGCATTTGGGGACAACG : GATTGACATCTGCTGTCAAGGAGCCTGTGAAGAAACAAGAAAGATTGGGAGTAGCTGGTCTGGCTTTACACTATGCTAACTTAGTTACTCAAATTGATAACATT : GCTTCACGGCCCACCGCTCTTCCCCCTAACATGAGGGATGGATTATATAATGGATTGCCTCCTTCCATAAAAACGGCCCTTCGTTCACGTCTGCAGGCGGTTGATGCAAAGGAAGAG : CTCACAATTCCGCAGATTAAAGCAGAAATGGAAAAAACTCTTCACTGGCTTGTCCCAGTCGCTGCAGATACTACGAA : AGCACACCAAGGCTTTGGATGGGTTGGAGAGTGGGCCAACACCGG : AAGCGAGTTTGGCAAGAAGAACCCTCCACAAGTTTCCCTCATTCGACTGCAGACACTCTACCATGCTGACAAACAGAAAATGGACTACCATGTCCTTGAACTAGTGACATGGCTTCACCGTTTGATCAGCCTGGTAAGATATAATGGGCCCAAGGCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTATATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCATGGATGACAGGGAATGATGTTTATTTGGGCATTTTGCAGCCAACTTACTATGAATGTTTTGGTAATATGAAATGTAACCATTAGG</gDNA_template>
            <first_frame> G  C  G  E  A  C  *  H  C  Y  V  Y  T  S  S  N  C  G  S  I  W  G  Q  R :   I  D  I  C  C  Q  G  A  C  E  E  T  R  K  I  G  S  S  W  S  G  F  T  L  C  *  L  S  Y  S  N  *  *  H   : C  F  T  A  H  R  S  S  P  *  H  E  G  W  I  I  *  W  I  A  S  F  H  K  N  G  P  S  F  T  S  A  G  G  *  C  K  G  R   : A  H  N  S  A  D  *  S  R  N  G  K  N  S  S  L  A  C  P  S  R  C  R  Y  Y  E  :  S  T  P  R  L  W  M  G  W  R  V  G  Q  H  R  :  K  R  V  W  Q  E  E  P  S  T  S  F  P  H  S  T  A  D  T  L  P  C  *  Q  T  E  N  G  L  P  C  P  *  T  S  D  M  A  S  P  F  D  Q  P  G  K  I  *  W  A  Q  G  F  S  R  T  I  T  N  T  Q  R  T  *  S  A  D  *  V  D  D  E  H  Q  L  K  N  T  *  D  S  D  F  S  R  R  *  D  F  T  R  E  S  D  E  T  E  M  F  G  S  W  K  K  Q  E  S  G  V  S  V  A  Q  E  S  A  K  G  V  G  A  K  *  K  H  G  *  L  P  S  Y  R  L  S  T  S  K  G  Y  C  F  G  Y  I  R  W  L  T  L  A  F  *  V  A  K  E  R  S  Q  A  K  K  R  F  I  F  L  F  S  *  F  L  A  P  S  S  Y  G  T  K  A  S  L  Y  I  V  S  P  S  Y  G  D  W  E  K  C  Y  T  V  A  Y  Y  Y  R  Q  N  T  F  R  F  *  W  N  *  M  F  M  D  D  R  E  *  C  L  F  G  H  F  A  A  N  L  L  *  M  F  W  *  Y  E  M  *  P  L   </first_frame>
            <second_frame>  V  V  E  K  L  V  D  I  V  T  Y  I  H  Q  A  I  V  E  A  F  G  D  N   : G  L  T  S  A  V  K  E  P  V  K  K  Q  E  R  L  G  V  A  G  L  A  L  H  Y  A  N  L  V  T  Q  I  D  N  I  :  A  S  R  P  T  A  L  P  P  N  M  R  D  G  L  Y  N  G  L  P  P  S  I  K  T  A  L  R  S  R  L  Q  A  V  D  A  K  E  E  :  L  T  I  P  Q  I  K  A  E  M  E  K  T  L  H  W  L  V  P  V  A  A  D  T  T  K :   A  H  Q  G  F  G  W  V  G  E  W  A  N  T  G :   S  E  F  G  K  K  N  P  P  Q  V  S  L  I  R  L  Q  T  L  Y  H  A  D  K  Q  K  M  D  Y  H  V  L  E  L  V  T  W  L  H  R  L  I  S  L  V  R  Y  N  G  P  K  A  F  P  G  R  S  P  T  R  K  G  L  N  L  Q  T  E  L  M  M  N  T  N  S  K  T  P  K  I  Q  I  S  L  E  D  R  T  L  L  E  K  V  M  K  Q  K  C  L  V  P  G  R  S  K  S  Q  E  F  L  L  P  K  N  R  Q  K  V  W  A  L  S  R  S  M  G  N  S  P  R  T  D  F  Q  H  P  K  A  T  V  L  D  I  L  D  G  L  H  *  H  F  E  L  L  K  R  D  L  K  Q  K  K  G  S  F  F  C  F  L  D  S  *  L  P  P  P  M  E  L  K  P  L  C  I  *  S  L  H  H  M  V  I  G  K  N  V  I  L  *  H  I  I  I  A  K  I  H  L  D  S  S  G  I  E  C  S  W  M  T  G  N  D  V  Y  L  G  I  L  Q  P  T  Y  Y  E  C  F  G  N  M  K  C  N  H  *  </second_frame>
            <third_frame>   L  W  R  S  L  L  T  L  L  R  I  Y  I  K  Q  L  W  K  H  L  G  T  T  :  D  *  H  L  L  S  R  S  L  *  R  N  K  K  D  W  E  *  L  V  W  L  Y  T  M  L  T  *  L  L  K  L  I  T  L :   L  H  G  P  P  L  F  P  L  T  *  G  M  D  Y  I  M  D  C  L  L  P  *  K  R  P  F  V  H  V  C  R  R  L  M  Q  R  K  S :   S  Q  F  R  R  L  K  Q  K  W  K  K  L  F  T  G  L  S  Q  S  L  Q  I  L  R   : K  H  T  K  A  L  D  G  L  E  S  G  P  T  P   : E  A  S  L  A  R  R  T  L  H  K  F  P  S  F  D  C  R  H  S  T  M  L  T  N  R  K  W  T  T  M  S  L  N  *  *  H  G  F  T  V  *  S  A  W  *  D  I  M  G  P  R  L  F  Q  D  D  H  Q  H  A  K  D  L  I  C  R  L  S  *  *  *  T  P  T  Q  K  H  L  R  F  R  F  L  S  K  I  G  L  Y  *  R  K  *  *  N  R  N  V  W  F  L  E  E  A  R  V  R  S  F  C  C  P  R  I  G  K  R  C  G  R  *  V  E  A  W  V  T  P  L  V  P  T  F  N  I  Q  R  L  L  F  W  I  Y  *  M  A  Y  I  S  I  L  S  C  *  R  E  I  S  S  K  K  K  V  H  F  F  V  F  L  I  L  S  S  L  L  L  W  N  *  S  L  F  V  Y  S  L  S  I  I  W  *  L  G  K  M  L  Y  C  S  I  L  L  S  P  K  Y  I  *  I  L  V  E  L  N  V  H  G  *  Q  G  M  M  F  I  W  A  F  C  S  Q  L  T  M  N  V  L  V  I  *  N  V  T  I  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29126" stop="29057"/>
                    <exon start="28253" stop="28150"/>
                    <exon start="28056" stop="27940"/>
                    <exon start="27803" stop="27727"/>
                    <exon start="27611" stop="27567"/>
                    <exon start="27109" stop="26662"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVEKLVDIVTYIHQAIVEAFGDNGLTSAVKEPVKKQERLGVAGLALHYANLVTQIDNIASRPTALPPNMRDGLYNGLPPSIKTALRSRLQAVDAKEELTIPQIKAEMEKTLHWLVPVAADTTKAHQGFGWVGEWANTGSEFGKKNPPQVSLIRLQTLYHADKQKMDYHVLELVTWLHRLISLVRYNGPKAFPGRSPTRKGLNLQTELMMNTNSKTPKIQISLEDRTLLEKVMKQKCLVPGRSKSQEFLLPKNRQKVWALSRSMGNSPRTDFQHPKATVLDILDGLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="26411" PGL_stop="26806"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26411" e_stop="26806"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="26411" e_stop="26806" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26411" stop="26806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419478" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTAAGTTGGCTGCAAAATGCCCAAATAAACATCATTCCCTGTCATCCATGAACATTCAATTCCACTAGAATCTAAATGTATTTTGGCGATAATAATATGCTACAGTATAACATTTTTCCCAATCACCATATGATGGAGAGACTATATACAAAGAGGCTTTAGTTCCATAGGAGGAGGGAGCTAAGAATCAAGAAAACAAAAAAATGAACCTTTTTTTTGCTTGAGATCTCTCTTTAGCAACTCAAAATGCTAATGTAAGCCATCTAATATATCCAAAACAGTAGCCTTTGGATGTTGAAAGTCGGTACGAGGGGAGTTACCCATGCTTCTACTTAGCGCCCACACCTTTTGCCGATTCTTGGGCAACAGAAACTCCTGACTCTTGCTTCTTCCA</gDNA_template>
            <first_frame> *  *  V  G  C  K  M  P  K  *  T  S  F  P  V  I  H  E  H  S  I  P  L  E  S  K  C  I  L  A  I  I  I  C  Y  S  I  T  F  F  P  I  T  I  *  W  R  D  Y  I  Q  R  G  F  S  S  I  G  G  G  S  *  E  S  R  K  Q  K  N  E  P  F  F  C  L  R  S  L  F  S  N  S  K  C  *  C  K  P  S  N  I  S  K  T  V  A  F  G  C  *  K  S  V  R  G  E  L  P  M  L  L  L  S  A  H  T  F  C  R  F  L  G  N  R  N  S  *  L  L  L  L  P </first_frame>
            <second_frame>  S  K  L  A  A  K  C  P  N  K  H  H  S  L  S  S  M  N  I  Q  F  H  *  N  L  N  V  F  W  R  *  *  Y  A  T  V  *  H  F  S  Q  S  P  Y  D  G  E  T  I  Y  K  E  A  L  V  P  *  E  E  G  A  K  N  Q  E  N  K  K  M  N  L  F  F  A  *  D  L  S  L  A  T  Q  N  A  N  V  S  H  L  I  Y  P  K  Q  *  P  L  D  V  E  S  R  Y  E  G  S  Y  P  C  F  Y  L  A  P  T  P  F  A  D  S  W  A  T  E  T  P  D  S  C  F  F   </second_frame>
            <third_frame>   V  S  W  L  Q  N  A  Q  I  N  I  I  P  C  H  P  *  T  F  N  S  T  R  I  *  M  Y  F  G  D  N  N  M  L  Q  Y  N  I  F  P  N  H  H  M  M  E  R  L  Y  T  K  R  L  *  F  H  R  R  R  E  L  R  I  K  K  T  K  K  *  T  F  F  L  L  E  I  S  L  *  Q  L  K  M  L  M  *  A  I  *  Y  I  Q  N  S  S  L  W  M  L  K  V  G  T  R  G  V  T  H  A  S  T  *  R  P  H  L  L  P  I  L  G  Q  Q  K  L  L  T  L  A  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0101P06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="33152" PGL_stop="31192"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33152" e_stop="33004"/>
            <exon e_start="32651" e_stop="32357"/>
            <exon e_start="31334" e_stop="31192"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.960" e_score="0.987"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="0.949"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="33152" e_stop="33004" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.960">
            <gDNA_intron_boundary i_start="33003" i_stop="32652" i_length="352"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="32651" e_stop="32357" e_length="295"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="32356" i_stop="31335" i_length="1022"/>
          </intron>
          <exon e_serial="3" e_score="0.952">
            <gDNA_exon_boundary e_start="31334" e_stop="31192" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33152" stop="33004"/>
              <exon start="32651" stop="32357"/>
              <exon start="31334" stop="31192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33152" stop="33004"/>
              <exon start="32651" stop="32357"/>
              <exon start="31334" stop="31210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33152" stop="33004"/>
              <exon start="32651" stop="32361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419505" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGTCAAACCCAAAACCCAAATTCCAAACCATAAACACAACACAAACACAAAGTACAAACCCAAAAAAAAGTAAGCAAAAAACGGCAATTTTTGGTCAAGTAATTCAGCTGATTGTCCGTGTACTCTGAATCTTCTTCTTGCTTCTAAG : GTGTAAAGATTGTATCTTTTTGTACCATTTGAGTGTTGGGAGCAAAATGGGAGGTGTTTGTACAGGTGGGACAGCTAGGAATAGAGTTGAAATTCACCATGAGAGCCCCCCGGGGTCTTCGAAAAAGGGGAATTCAGTTGAGAGCATTGGGAAGCAGAAGAAAGCTGAATCTTTTTCGTATCCTGATGTGGGTGCTTTTCGTGGGACGCCTAATCTATATGATTCTGGTGAATTGTATATGTCTATTTCAAGGGAGTTGAAGCCATCGACACCTGCTAGGACAGGAGTGAACAAG : GCTCCTAGCTCTTTTCTTGGGAAGGCCAGTATAGTCGGCCTAGAAAAAGCAGTTGAAGTATTAGATACACTTGGGAGCAGCATGACAAATTTGAACTCTGGAGGCTTTATGTCAGGAACGACATCAAGAGGGAATAAAATATC</gDNA_template>
            <first_frame> E  S  N  P  K  P  K  F  Q  T  I  N  T  T  Q  T  Q  S  T  N  P  K  K  S  K  Q  K  T  A  I  F  G  Q  V  I  Q  L  I  V  R  V  L  *  I  F  F  L  L  L  R :   C  K  D  C  I  F  L  Y  H  L  S  V  G  S  K  M  G  G  V  C  T  G  G  T  A  R  N  R  V  E  I  H  H  E  S  P  P  G  S  S  K  K  G  N  S  V  E  S  I  G  K  Q  K  K  A  E  S  F  S  Y  P  D  V  G  A  F  R  G  T  P  N  L  Y  D  S  G  E  L  Y  M  S  I  S  R  E  L  K  P  S  T  P  A  R  T  G  V  N  K  :  A  P  S  S  F  L  G  K  A  S  I  V  G  L  E  K  A  V  E  V  L  D  T  L  G  S  S  M  T  N  L  N  S  G  G  F  M  S  G  T  T  S  R  G  N  K  I   </first_frame>
            <second_frame>  S  Q  T  Q  N  P  N  S  K  P  *  T  Q  H  K  H  K  V  Q  T  Q  K  K  V  S  K  K  R  Q  F  L  V  K  *  F  S  *  L  S  V  Y  S  E  S  S  S  C  F  *   : G  V  K  I  V  S  F  C  T  I  *  V  L  G  A  K  W  E  V  F  V  Q  V  G  Q  L  G  I  E  L  K  F  T  M  R  A  P  R  G  L  R  K  R  G  I  Q  L  R  A  L  G  S  R  R  K  L  N  L  F  R  I  L  M  W  V  L  F  V  G  R  L  I  Y  M  I  L  V  N  C  I  C  L  F  Q  G  S  *  S  H  R  H  L  L  G  Q  E  *  T  R :   L  L  A  L  F  L  G  R  P  V  *  S  A  *  K  K  Q  L  K  Y  *  I  H  L  G  A  A  *  Q  I  *  T  L  E  A  L  C  Q  E  R  H  Q  E  G  I  K  Y  </second_frame>
            <third_frame>   V  K  P  K  T  Q  I  P  N  H  K  H  N  T  N  T  K  Y  K  P  K  K  K  *  A  K  N  G  N  F  W  S  S  N  S  A  D  C  P  C  T  L  N  L  L  L  A  S  K  :  V  *  R  L  Y  L  F  V  P  F  E  C  W  E  Q  N  G  R  C  L  Y  R  W  D  S  *  E  *  S  *  N  S  P  *  E  P  P  G  V  F  E  K  G  E  F  S  *  E  H  W  E  A  E  E  S  *  I  F  F  V  S  *  C  G  C  F  S  W  D  A  *  S  I  *  F  W  *  I  V  Y  V  Y  F  K  G  V  E  A  I  D  T  C  *  D  R  S  E  Q   : G  S  *  L  F  S  W  E  G  Q  Y  S  R  P  R  K  S  S  *  S  I  R  Y  T  W  E  Q  H  D  K  F  E  L  W  R  L  Y  V  R  N  D  I  K  R  E  *  N  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33023" stop="33004"/>
                    <exon start="32651" stop="32357"/>
                    <exon start="31334" stop="31194"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFFLLLRCKDCIFLYHLSVGSKMGGVCTGGTARNRVEIHHESPPGSSKKGNSVESIGKQKKAESFSYPDVGAFRGTPNLYDSGELYMSISRELKPSTPARTGVNKAPSSFLGKASIVGLEKAVEVLDTLGSSMTNLNSGGFMSGTTSRGNKI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="43233" PGL_stop="48716"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43233" e_stop="43431"/>
            <exon e_start="43525" e_stop="43612"/>
            <exon e_start="43735" e_stop="43921"/>
            <exon e_start="44019" e_stop="44109"/>
            <exon e_start="45622" e_stop="45657"/>
            <exon e_start="45785" e_stop="45883"/>
            <exon e_start="46589" e_stop="46719"/>
            <exon e_start="46870" e_stop="46918"/>
            <exon e_start="47005" e_stop="47094"/>
            <exon e_start="47174" e_stop="47227"/>
            <exon e_start="47701" e_stop="47766"/>
            <exon e_start="48323" e_stop="48420"/>
            <exon e_start="48507" e_stop="48716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.549" e_score="0.995"/>
          <exon-intron don_prob="0.923" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.765" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.307" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.347" e_score="0.978"/>
          <exon-intron don_prob="0.911" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.805" e_score="0.969"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="43233" e_stop="43431" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.549">
            <gDNA_intron_boundary i_start="43432" i_stop="43524" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43525" e_stop="43612" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.923" acc_prob="0.992">
            <gDNA_intron_boundary i_start="43613" i_stop="43734" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43735" e_stop="43921" e_length="187"/>
          </exon>
          <intron i_serial="3" don_prob="0.803" acc_prob="0.961">
            <gDNA_intron_boundary i_start="43922" i_stop="44018" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44019" e_stop="44109" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.997">
            <gDNA_intron_boundary i_start="44110" i_stop="45621" i_length="1512"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45622" e_stop="45657" e_length="36"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.765">
            <gDNA_intron_boundary i_start="45658" i_stop="45784" i_length="127"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45785" e_stop="45883" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45884" i_stop="46588" i_length="705"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="46589" e_stop="46719" e_length="131"/>
          </exon>
          <intron i_serial="7" don_prob="0.307" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46720" i_stop="46869" i_length="150"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="46870" e_stop="46918" e_length="49"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46919" i_stop="47004" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="0.978">
            <gDNA_exon_boundary e_start="47005" e_stop="47094" e_length="90"/>
          </exon>
          <intron i_serial="9" don_prob="0.943" acc_prob="0.347">
            <gDNA_intron_boundary i_start="47095" i_stop="47173" i_length="79"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="47174" e_stop="47227" e_length="54"/>
          </exon>
          <intron i_serial="10" don_prob="0.911" acc_prob="0.993">
            <gDNA_intron_boundary i_start="47228" i_stop="47700" i_length="473"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="47701" e_stop="47766" e_length="66"/>
          </exon>
          <intron i_serial="11" don_prob="0.996" acc_prob="0.897">
            <gDNA_intron_boundary i_start="47767" i_stop="48322" i_length="556"/>
          </intron>
          <exon e_serial="12" e_score="0.969">
            <gDNA_exon_boundary e_start="48323" e_stop="48420" e_length="98"/>
          </exon>
          <intron i_serial="12" don_prob="0.886" acc_prob="0.805">
            <gDNA_intron_boundary i_start="48421" i_stop="48506" i_length="86"/>
          </intron>
          <exon e_serial="13" e_score="0.948">
            <gDNA_exon_boundary e_start="48507" e_stop="48716" e_length="210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43233" stop="43431"/>
              <exon start="43525" stop="43612"/>
              <exon start="43735" stop="43921"/>
              <exon start="44019" stop="44109"/>
              <exon start="45622" stop="45657"/>
              <exon start="45785" stop="45883"/>
              <exon start="46589" stop="46643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43233" stop="43431"/>
              <exon start="43525" stop="43612"/>
              <exon start="43735" stop="43921"/>
              <exon start="44019" stop="44068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43239" stop="43431"/>
              <exon start="43525" stop="43612"/>
              <exon start="43735" stop="43921"/>
              <exon start="44019" stop="44109"/>
              <exon start="45622" stop="45657"/>
              <exon start="45785" stop="45883"/>
              <exon start="46589" stop="46719"/>
              <exon start="46870" stop="46918"/>
              <exon start="47005" stop="47034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46589" stop="46719"/>
              <exon start="46870" stop="46918"/>
              <exon start="47005" stop="47094"/>
              <exon start="47174" stop="47227"/>
              <exon start="47701" stop="47766"/>
              <exon start="48323" stop="48420"/>
              <exon start="48507" stop="48716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431227" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCCAACGAATTATCAGACGGAGCCCGTATCCATCCGTATCGTTGCCGGATTAAAAAAAGCACCGATTGAACTCCGACGGCTGTTAAAGCAATCTGTGTGAAATTCCGACGATTCTCCGCCATGGCGATCGACGCAGTCCCTCCACTCATCGCTGCACAGCTGAATTACATAGTCACTCACGCTCCATTCTCTGTTAAG : GTAGAAAATATGTGTTCAGGATGCAAAAACACTGGTTTGCTTGATCGGTTCTCGTTAGTAATCCCCTTCTGTCTTGATTTCATCAAAT : GGGATGTGATGTACAATGCTGTGTATCCATTAGCAGCACCAGATGTTATATTTGGGTCGGAAGATGAAACTTTTCGACCTTATCATGCTGTCAGTGATGCTAGTGACTCAAAGTCATTGAAGAACCCTCTTACTGACTGGAATAATAGAGATCCGACTAGTCTTTTCACTCTGGTTCTGCAGCTGAG : GGAGTTGTACAAGGCGTACCAAAAGAAAAGAGTTGAACAAGTTGATGATGACAGGTTGAAGTTTGAAATCAGCACAATGCTTTCCAGAGAG : GGGATTGAAATGTCTTTGAGTTCAAATATTGATAAG : CCAGAAGAGGTTAAATTTGCTGTCCCACTGCTGGATTTGGATTTAAACAAAATGGTTGCAGGATCCACTTGGCGCCATCCACAGAAGATATACCTACAG : GTTATATATCCAGTTGGCAGGAAATACTCCAGTGCTCCTTCTGCCCCACGTTTGAAATTGGTATCTTCTCCTGAATTGAAGGCTGTCTTCTCAATTGATGATTTCAGGCTTCCTCCATGGTTGGATGGAAT : GTGTATGGCTGAGTACCTTCCGACATTAGAAGAGATGCTTGAATCACAG : ATTAAAGATGCAGTTGCATCCATTGAAAGTAGAAGGAAGCTCATTATAGCATTAGCTCCTCTCTTTGGAAGGCCAGTGGAAGCAGATCCA : CTTTTCTGCAGGAAGGCGACCTTTCTATCTTCCTCTGGGGTATTTACTTTTCTG : GTTCATGTTGCCATCCCACTTCAGTTCCCTAAGCAGCAGCCAAGTTTGATGCTTCAGAGTTCCCAG : CACTTTAATTCTCAAGGTCTACCCATCAAGTCTCCAGTCACTGCTGAGTACCCGTGGAGTCCCAGATGGGAAACATCAGATATGGCTGAGCGGATCTT : TGATTTCATTGTGGAAGAATGCTTGAATTTCAAGAAATACTGCAACGAATCCATGCTTCAGAATCGATGAAAGCAGCTGTTACAAGAATTCGTTTGTTCTACATTTTGGTGATGTCCTGTATTCAAGTCTTTAGCTGTTGATCTTTGTATTGTAATGTTTCTAGATGTGCATAAGAAAGACCCCAAAGGACATATAAACTTCCTAATTTC</gDNA_template>
            <first_frame> A  Q  R  I  I  R  R  S  P  Y  P  S  V  S  L  P  D  *  K  K  H  R  L  N  S  D  G  C  *  S  N  L  C  E  I  P  T  I  L  R  H  G  D  R  R  S  P  S  T  H  R  C  T  A  E  L  H  S  H  S  R  S  I  L  C  *   : G  R  K  Y  V  F  R  M  Q  K  H  W  F  A  *  S  V  L  V  S  N  P  L  L  S  *  F  H  Q  M :   G  C  D  V  Q  C  C  V  S  I  S  S  T  R  C  Y  I  W  V  G  R  *  N  F  S  T  L  S  C  C  Q  *  C  *  *  L  K  V  I  E  E  P  S  Y  *  L  E  *  *  R  S  D  *  S  F  H  S  G  S  A  A  E  :  G  V  V  Q  G  V  P  K  E  K  S  *  T  S  *  *  *  Q  V  E  V  *  N  Q  H  N  A  F  Q  R   : G  D  *  N  V  F  E  F  K  Y  *  *   : A  R  R  G  *  I  C  C  P  T  A  G  F  G  F  K  Q  N  G  C  R  I  H  L  A  P  S  T  E  D  I  P  T   : G  Y  I  S  S  W  Q  E  I  L  Q  C  S  F  C  P  T  F  E  I  G  I  F  S  *  I  E  G  C  L  L  N  *  *  F  Q  A  S  S  M  V  G  W  N  :  V  Y  G  *  V  P  S  D  I  R  R  D  A  *  I  T   : D  *  R  C  S  C  I  H  *  K  *  K  E  A  H  Y  S  I  S  S  S  L  W  K  A  S  G  S  R  S   : T  F  L  Q  E  G  D  L  S  I  F  L  W  G  I  Y  F  S   : G  S  C  C  H  P  T  S  V  P  *  A  A  A  K  F  D  A  S  E  F  P   : A  L  *  F  S  R  S  T  H  Q  V  S  S  H  C  *  V  P  V  E  S  Q  M  G  N  I  R  Y  G  *  A  D  L  :  *  F  H  C  G  R  M  L  E  F  Q  E  I  L  Q  R  I  H  A  S  E  S  M  K  A  A  V  T  R  I  R  L  F  Y  I  L  V  M  S  C  I  Q  V  F  S  C  *  S  L  Y  C  N  V  S  R  C  A  *  E  R  P  Q  R  T  Y  K  L  P  N  F </first_frame>
            <second_frame>  P  N  E  L  S  D  G  A  R  I  H  P  Y  R  C  R  I  K  K  S  T  D  *  T  P  T  A  V  K  A  I  C  V  K  F  R  R  F  S  A  M  A  I  D  A  V  P  P  L  I  A  A  Q  L  N  Y  I  V  T  H  A  P  F  S  V  K  :  V  E  N  M  C  S  G  C  K  N  T  G  L  L  D  R  F  S  L  V  I  P  F  C  L  D  F  I  K   : W  D  V  M  Y  N  A  V  Y  P  L  A  A  P  D  V  I  F  G  S  E  D  E  T  F  R  P  Y  H  A  V  S  D  A  S  D  S  K  S  L  K  N  P  L  T  D  W  N  N  R  D  P  T  S  L  F  T  L  V  L  Q  L  R :   E  L  Y  K  A  Y  Q  K  K  R  V  E  Q  V  D  D  D  R  L  K  F  E  I  S  T  M  L  S  R  E  :  G  I  E  M  S  L  S  S  N  I  D  K  :  P  E  E  V  K  F  A  V  P  L  L  D  L  D  L  N  K  M  V  A  G  S  T  W  R  H  P  Q  K  I  Y  L  Q  :  V  I  Y  P  V  G  R  K  Y  S  S  A  P  S  A  P  R  L  K  L  V  S  S  P  E  L  K  A  V  F  S  I  D  D  F  R  L  P  P  W  L  D  G  M :   C  M  A  E  Y  L  P  T  L  E  E  M  L  E  S  Q  :  I  K  D  A  V  A  S  I  E  S  R  R  K  L  I  I  A  L  A  P  L  F  G  R  P  V  E  A  D  P  :  L  F  C  R  K  A  T  F  L  S  S  S  G  V  F  T  F  L  :  V  H  V  A  I  P  L  Q  F  P  K  Q  Q  P  S  L  M  L  Q  S  S  Q  :  H  F  N  S  Q  G  L  P  I  K  S  P  V  T  A  E  Y  P  W  S  P  R  W  E  T  S  D  M  A  E  R  I  F :   D  F  I  V  E  E  C  L  N  F  K  K  Y  C  N  E  S  M  L  Q  N  R  *  K  Q  L  L  Q  E  F  V  C  S  T  F  W  *  C  P  V  F  K  S  L  A  V  D  L  C  I  V  M  F  L  D  V  H  K  K  D  P  K  G  H  I  N  F  L  I   </second_frame>
            <third_frame>   P  T  N  Y  Q  T  E  P  V  S  I  R  I  V  A  G  L  K  K  A  P  I  E  L  R  R  L  L  K  Q  S  V  *  N  S  D  D  S  P  P  W  R  S  T  Q  S  L  H  S  S  L  H  S  *  I  T  *  S  L  T  L  H  S  L  L  R :   *  K  I  C  V  Q  D  A  K  T  L  V  C  L  I  G  S  R  *  *  S  P  S  V  L  I  S  S  N  :  G  M  *  C  T  M  L  C  I  H  *  Q  H  Q  M  L  Y  L  G  R  K  M  K  L  F  D  L  I  M  L  S  V  M  L  V  T  Q  S  H  *  R  T  L  L  L  T  G  I  I  E  I  R  L  V  F  S  L  W  F  C  S  *   : G  S  C  T  R  R  T  K  R  K  E  L  N  K  L  M  M  T  G  *  S  L  K  S  A  Q  C  F  P  E  R :   G  L  K  C  L  *  V  Q  I  L  I  S :   Q  K  R  L  N  L  L  S  H  C  W  I  W  I  *  T  K  W  L  Q  D  P  L  G  A  I  H  R  R  Y  T  Y  R :   L  Y  I  Q  L  A  G  N  T  P  V  L  L  L  P  H  V  *  N  W  Y  L  L  L  N  *  R  L  S  S  Q  L  M  I  S  G  F  L  H  G  W  M  E   : C  V  W  L  S  T  F  R  H  *  K  R  C  L  N  H  R :   L  K  M  Q  L  H  P  L  K  V  E  G  S  S  L  *  H  *  L  L  S  L  E  G  Q  W  K  Q  I  H :   F  S  A  G  R  R  P  F  Y  L  P  L  G  Y  L  L  F  W :   F  M  L  P  S  H  F  S  S  L  S  S  S  Q  V  *  C  F  R  V  P  S :   T  L  I  L  K  V  Y  P  S  S  L  Q  S  L  L  S  T  R  G  V  P  D  G  K  H  Q  I  W  L  S  G  S   : L  I  S  L  W  K  N  A  *  I  S  R  N  T  A  T  N  P  C  F  R  I  D  E  S  S  C  Y  K  N  S  F  V  L  H  F  G  D  V  L  Y  S  S  L  *  L  L  I  F  V  L  *  C  F  *  M  C  I  R  K  T  P  K  D  I  *  T  S  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43303" stop="43431"/>
                    <exon start="43525" stop="43612"/>
                    <exon start="43735" stop="43921"/>
                    <exon start="44019" stop="44109"/>
                    <exon start="45622" stop="45657"/>
                    <exon start="45785" stop="45883"/>
                    <exon start="46589" stop="46719"/>
                    <exon start="46870" stop="46918"/>
                    <exon start="47005" stop="47094"/>
                    <exon start="47174" stop="47227"/>
                    <exon start="47701" stop="47766"/>
                    <exon start="48323" stop="48420"/>
                    <exon start="48507" stop="48576"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1185</number_coding_nucleotides>
                  <number_encoded_amino_acids>395</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPTAVKAICVKFRRFSAMAIDAVPPLIAAQLNYIVTHAPFSVKVENMCSGCKNTGLLDRFSLVIPFCLDFIKWDVMYNAVYPLAAPDVIFGSEDETFRPYHAVSDASDSKSLKNPLTDWNNRDPTSLFTLVLQLRELYKAYQKKRVEQVDDDRLKFEISTMLSREGIEMSLSSNIDKPEEVKFAVPLLDLDLNKMVAGSTWRHPQKIYLQVIYPVGRKYSSAPSAPRLKLVSSPELKAVFSIDDFRLPPWLDGMCMAEYLPTLEEMLESQIKDAVASIESRRKLIIALAPLFGRPVEADPLFCRKATFLSSSGVFTFLVHVAIPLQFPKQQPSLMLQSSQHFNSQGLPIKSPVTAEYPWSPRWETSDMAERIFDFIVEECLNFKKYCNESMLQNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="50567" PGL_stop="53244"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50567" e_stop="51097"/>
            <exon e_start="52040" e_stop="52309"/>
            <exon e_start="52397" e_stop="53244"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.853" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.478" acc_prob="0.861" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50567" e_stop="51097" e_length="531"/>
          </exon>
          <intron i_serial="1" don_prob="0.853" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52040" e_stop="52309" e_length="270"/>
          </exon>
          <intron i_serial="2" don_prob="0.478" acc_prob="0.861">
            <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52397" e_stop="53244" e_length="848"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50567" stop="51097"/>
              <exon start="52040" stop="52199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50588" stop="51097"/>
              <exon start="52040" stop="52309"/>
              <exon start="52397" stop="53237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50590" stop="51097"/>
              <exon start="52040" stop="52309"/>
              <exon start="52397" stop="53237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50590" stop="51097"/>
              <exon start="52040" stop="52303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50591" stop="51097"/>
              <exon start="52040" stop="52101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50593" stop="51097"/>
              <exon start="52040" stop="52102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50596" stop="51094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50596" stop="50948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50596" stop="50819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50597" stop="51097"/>
              <exon start="52040" stop="52281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50597" stop="51097"/>
              <exon start="52040" stop="52252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50597" stop="51097"/>
              <exon start="52040" stop="52179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50597" stop="51097"/>
              <exon start="52040" stop="52140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50597" stop="51088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50597" stop="50891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50598" stop="51097"/>
              <exon start="52040" stop="52252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50598" stop="51097"/>
              <exon start="52040" stop="52161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50600" stop="51097"/>
              <exon start="52040" stop="52309"/>
              <exon start="52397" stop="52422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50603" stop="51097"/>
              <exon start="52040" stop="52309"/>
              <exon start="52397" stop="52452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50604" stop="51057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50604" stop="51026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50604" stop="50914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50608" stop="51097"/>
              <exon start="52040" stop="52309"/>
              <exon start="52397" stop="52513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50608" stop="51097"/>
              <exon start="52040" stop="52149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50608" stop="51097"/>
              <exon start="52040" stop="52148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50608" stop="51007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50612" stop="51097"/>
              <exon start="52040" stop="52233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50612" stop="51097"/>
              <exon start="52040" stop="52099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50612" stop="51097"/>
              <exon start="52040" stop="52099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50612" stop="50957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50613" stop="51097"/>
              <exon start="52040" stop="52309"/>
              <exon start="52397" stop="53184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50613" stop="51031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50616" stop="51097"/>
              <exon start="52040" stop="52084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50617" stop="51058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50619" stop="51097"/>
              <exon start="52040" stop="52309"/>
              <exon start="52397" stop="52431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50619" stop="51097"/>
              <exon start="52040" stop="52152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50622" stop="51097"/>
              <exon start="52040" stop="52309"/>
              <exon start="52397" stop="53175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50623" stop="50819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50625" stop="51097"/>
              <exon start="52040" stop="52209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50626" stop="51070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50627" stop="51097"/>
              <exon start="52040" stop="52159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50629" stop="51097"/>
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              <exon start="52257" stop="52309"/>
              <exon start="52397" stop="52890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52257" stop="52309"/>
              <exon start="52397" stop="52726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52289" stop="52309"/>
              <exon start="52397" stop="53150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52289" stop="52309"/>
              <exon start="52397" stop="52898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52289" stop="52309"/>
              <exon start="52397" stop="52824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52289" stop="52309"/>
              <exon start="52397" stop="52798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52400" stop="53096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52410" stop="53161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52412" stop="53213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52412" stop="52922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52506" stop="53213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589304" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52614" stop="53213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414451" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52621" stop="53223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52621" stop="53223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52757" stop="53224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52791" stop="53244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52822" stop="53244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52834" stop="53213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52862" stop="53213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52862" stop="53213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52974" stop="53244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTACCACTAGAAATATCACTCTCTTTCCCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG : GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAGGTAAGGGAGGAGTATCCAGACAGGATGATGCTCACATTCTCTGTTTTCCCTTCTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT : TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTATATGAATATACTGTATTACAGTAGCTTCTT</gDNA_template>
            <first_frame> S  L  P  L  E  I  S  L  S  F  P  F  L  P  S  S  S  S  S  S  S  S  L  L  L  L  I  L  S  F  L  S  S  I  F  F  I  K  K  T  K  R  K  *  E  K  F  F  T  F  K  E  D  N  V  E  T  K  S  V  P  N  S  G  K  L  S  V  M  N  T  V  L  I  L  P  D  V  T  K  E  P  P  L  S  P  I  F  S  L  N  V  S  M  F  I  S  M  K  L  L  V  D  V  M  F  L  G  R  F  *  W  I  *  S  L  V  R  W  I  V  S  D  L  V  P  M  D  R  S  S  V  L  I  T  L  S  L  D  S  L  V  L  V  I  T  G  P  K  V  I  I  L  K  A  L  S  *  L  M  L  F  *  M  L  F  V  K  K  R  R  I  V  I  A  C  K  :  D  S  R  F  A  T  H  L  V  E  G  L  D  L  A  W  E  H  Y  *  F  P  R  *  G  R  S  I  Q  T  G  *  C  S  H  S  L  F  S  L  L  Q  R  C  L  T  L  L  *  N  H  T  M  L  H  C  R  C  T  N  W  W  R  M  P  M  N  V  W  S  L  T  T  K  L  Y  M  I  F  V  S  E  L  *  S  S  L  L  Q  V  :  L  V  T  *  T  I  *  S  L  Q  P  *  V  V  L  L  A  V  *  D  S  L  V  S  *  T  Q  T  *  G  N  W  L  *  I  *  F  P  S  H  V  F  T  S  S  W  W  D  L  P  H  *  P  L  V  D  H  S  N  T  Y  R  *  Q  C  Q  S  L  L  N  K  C  G  M  P  R  T  *  C  A  R  Q  I  P  V  M  D  V  T  *  Q  L  L  P  C  L  G  V  R  *  A  Q  R  R  *  M  N  R  *  S  M  C  R  T  R  T  R  P  T  L  L  N  G  S  L  T  M  S  S  L  V  C  V  I  S  H  Q  L  G  *  R  W  H  P  R  L  L  E  I  Q  P  P  F  R  R  C  L  E  G  *  V  S  S  L  L  P  C  S  G  A  R  L  S  C  I  G  T  Q  V  K  E  W  M  K  W  S  S  L  K  P  R  A  T  *  M  I  W  L  Q  N  I  N  N  T  R  M  L  Q  Q  M  M  R  K  S  M  M  M  M  R  L  L  M  I  N  T  N  P  K  N  F  S  T  F  D  I  L  L  V  C  S  I  S  A  K  *  T  C  Y  V  S  Y  C  L  L  F  I  *  T  L  C  L  V  C  *  E  M  K  C  L  L  L  V  Y  M  N  I  L  Y  Y  S  S  F   </first_frame>
            <second_frame>  H  Y  H  *  K  Y  H  S  L  S  H  F  S  L  H  L  H  L  H  L  H  L  F  F  F  L  F  S  H  S  S  H  Q  F  F  S  S  K  K  L  R  E  N  E  R  N  S  S  H  S  R  R  T  M  W  K  P  N  R  F  Q  I  L  G  S  Y  L  *  *  T  R  C  *  S  Y  R  T  L  Q  R  N  R  R  *  V  R  S  S  A  *  T  Y  Q  C  L  F  Q  *  S  F  W  W  T  L  C  S  *  G  G  F  D  G  S  R  A  W  Y  D  G  *  Y  Q  I  W  S  L  W  T  D  L  P  S  *  *  L  C  L  W  T  V  W  C  W  *  *  L  G  Q  R  S  L  Y  *  R  R  *  V  D  *  C  C  S  R  C  C  S  *  R  S  G  E  L  *  L  L  A  R :   I  P  G  L  P  L  T  W  W  R  D  W  I  W  H  G  N  T  T  D  F  Q  G  K  G  G  V  S  R  Q  D  D  A  H  I  L  C  F  P  F  S  K  G  V  *  H  C  C  R  T  I  Q  C  Y  T  V  G  A  P  I  G  G  E  C  R  *  M  Y  G  P  *  Q  R  S  S  I  *  Y  L  F  Q  N  F  E  A  H  Y  S  K  F :   W  *  L  E  P  F  D  L  C  N  H  E  W  C  Y  L  L  F  E  I  P  W  S  A  E  L  R  P  E  E  I  G  C  E  F  N  S  L  P  T  S  S  L  L  H  G  G  I  C  P  T  N  L  S  W  I  T  A  I  H  I  A  N  S  A  R  A  Y  S  T  N  V  G  C  Q  E  H  D  V  R  G  R  S  P  S  W  T  L  P  D  S  F  C  H  V  *  G  *  D  E  H  K  G  G  R  *  T  D  D  Q  C  A  E  Q  E  L  V  L  L  C  *  M  D  P  *  Q  C  Q  V  *  C  V  *  Y  P  T  N  W  A  E  D  G  I  H  V  C  W  K  F  N  L  H  S  G  D  V  *  K  G  E  *  A  V  Y  C  H  V  Q  A  Q  G  F  L  A  L  V  H  R  *  R  N  G  *  N  G  V  H  *  S  R  E  Q  H  E  *  F  G  C  R  I  S  T  I  P  G  C  Y  S  R  *  *  G  R  V  *  *  *  *  G  C  *  *  S  I  P  I  L  K  T  S  L  H  L  I  Y  C  W  F  V  Q  F  L  P  S  E  L  V  M  F  P  I  V  F  S  S  F  E  L  C  V  W  F  V  E  K  *  N  V  F  Y  W  S  I  *  I  Y  C  I  T  V  A  S  </second_frame>
            <third_frame>   I  T  T  R  N  I  T  L  F  P  I  S  P  F  I  F  I  F  I  F  I  S  S  S  S  Y  S  L  I  P  L  I  N  F  F  H  Q  K  N  *  E  K  M  R  E  I  L  H  I  Q  G  G  Q  C  G  N  Q  I  G  S  K  F  W  E  V  I  C  D  E  H  G  V  D  P  T  G  R  Y  K  G  T  A  A  E  S  D  L  Q  L  E  R  I  N  V  Y  F  N  E  A  S  G  G  R  Y  V  P  R  A  V  L  M  D  L  E  P  G  T  M  D  S  I  R  S  G  P  Y  G  Q  I  F  R  P  D  N  F  V  F  G  Q  S  G  A  G  N  N  W  A  K  G  H  Y  T  E  G  A  E  L  I  D  A  V  L  D  V  V  R  K  E  A  E  N  C  D  C  L  Q   : G  F  Q  V  C  H  S  L  G  G  G  T  G  S  G  M  G  T  L  L  I  S  K  V  R  E  E  Y  P  D  R  M  M  L  T  F  S  V  F  P  S  P  K  V  S  D  T  V  V  E  P  Y  N  A  T  L  S  V  H  Q  L  V  E  N  A  D  E  C  M  V  L  D  N  E  A  L  Y  D  I  C  F  R  T  L  K  L  T  T  P  S   : F  G  D  L  N  H  L  I  S  A  T  M  S  G  V  T  C  C  L  R  F  P  G  Q  L  N  S  D  L  R  K  L  A  V  N  L  I  P  F  P  R  L  H  F  F  M  V  G  F  A  P  L  T  S  R  G  S  Q  Q  Y  I  S  L  T  V  P  E  L  T  Q  Q  M  W  D  A  K  N  M  M  C  A  A  D  P  R  H  G  R  Y  L  T  A  S  A  M  F  R  G  K  M  S  T  K  E  V  D  E  Q  M  I  N  V  Q  N  K  N  S  S  Y  F  V  E  W  I  P  N  N  V  K  S  S  V  C  D  I  P  P  T  G  L  K  M  A  S  T  F  V  G  N  S  T  S  I  Q  E  M  F  R  R  V  S  E  Q  F  T  A  M  F  R  R  K  A  F  L  H  W  Y  T  G  E  G  M  D  E  M  E  F  T  E  A  E  S  N  M  N  D  L  V  A  E  Y  Q  Q  Y  Q  D  A  T  A  D  D  E  E  E  Y  D  D  D  E  V  A  D  D  Q  Y  Q  S  *  K  L  L  Y  I  *  Y  I  V  G  L  F  N  F  C  Q  V  N  L  L  C  F  L  L  S  S  L  H  L  N  F  V  F  G  L  L  R  N  E  M  S  F  I  G  L  Y  E  Y  T  V  L  Q  *  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50689" stop="51097"/>
                    <exon start="52040" stop="52309"/>
                    <exon start="52397" stop="53079"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1359</number_coding_nucleotides>
                  <number_encoded_amino_acids>453</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYKGTAAESDLQLERINVYFNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKVREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADDEEEYDDDEVADDQYQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="50591" e_stop="51097"/>
            <exon e_start="52040" e_stop="52107"/>
            <exon e_start="52160" e_stop="52309"/>
            <exon e_start="52397" e_stop="53244"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.853" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.401" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.478" acc_prob="0.861" e_score="0.992"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50591" e_stop="51097" e_length="507"/>
          </exon>
          <intron i_serial="1" don_prob="0.853" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51098" i_stop="52039" i_length="942"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52040" e_stop="52107" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.401" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52108" i_stop="52159" i_length="52"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="52160" e_stop="52309" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.478" acc_prob="0.861">
            <gDNA_intron_boundary i_start="52310" i_stop="52396" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="52397" e_stop="53244" e_length="848"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50591" stop="51097"/>
              <exon start="52040" stop="52101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50593" stop="51097"/>
              <exon start="52040" stop="52102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50596" stop="51094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50596" stop="50948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50596" stop="50819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50597" stop="51088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50597" stop="50891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50604" stop="51057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50604" stop="51026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50604" stop="50914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50608" stop="51007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50612" stop="51097"/>
              <exon start="52040" stop="52099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50612" stop="51097"/>
              <exon start="52040" stop="52099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50612" stop="50957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50613" stop="51031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50616" stop="51097"/>
              <exon start="52040" stop="52084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50617" stop="51058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50623" stop="50819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50626" stop="51070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50631" stop="51097"/>
              <exon start="52040" stop="52100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50634" stop="51097"/>
              <exon start="52040" stop="52073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50639" stop="51047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50642" stop="51056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50647" stop="50865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50648" stop="51042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50651" stop="50816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50657" stop="51097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50657" stop="51084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50659" stop="51097"/>
              <exon start="52040" stop="52099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50663" stop="51097"/>
              <exon start="52040" stop="52099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50667" stop="51034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50668" stop="50943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50669" stop="51097"/>
              <exon start="52040" stop="52088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50670" stop="51097"/>
              <exon start="52040" stop="52099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50671" stop="51097"/>
              <exon start="52040" stop="52099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50680" stop="51070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50681" stop="51070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50682" stop="51097"/>
              <exon start="52040" stop="52103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50682" stop="51097"/>
              <exon start="52040" stop="52101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50698" stop="51034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50700" stop="51097"/>
              <exon start="52040" stop="52101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50710" stop="51097"/>
              <exon start="52040" stop="52102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52040" stop="52107"/>
              <exon start="52160" stop="52309"/>
              <exon start="52397" stop="52836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52186" stop="52309"/>
              <exon start="52397" stop="52968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52186" stop="52309"/>
              <exon start="52397" stop="52897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52233" stop="52309"/>
              <exon start="52397" stop="53244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52235" stop="52309"/>
              <exon start="52397" stop="52798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52250" stop="52309"/>
              <exon start="52397" stop="52995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52257" stop="52309"/>
              <exon start="52397" stop="52890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52257" stop="52309"/>
              <exon start="52397" stop="52726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52289" stop="52309"/>
              <exon start="52397" stop="53150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52289" stop="52309"/>
              <exon start="52397" stop="52898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52289" stop="52309"/>
              <exon start="52397" stop="52824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52289" stop="52309"/>
              <exon start="52397" stop="52798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52400" stop="53096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52410" stop="53161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52412" stop="53213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52412" stop="52922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52506" stop="53213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589304" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52614" stop="53213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414451" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52621" stop="53223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52621" stop="53223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52757" stop="53224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52791" stop="53244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52822" stop="53244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52834" stop="53213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52862" stop="53213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52862" stop="53213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52974" stop="53244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTCCCATTTCTCCCTTCATCTTCATCTTCATCTTCATCTCTTCTTCTTCTTATTCTCTCATTCCTCTCATCAATTTTTTTCATCAAAAAAACTAAGAGAAAATGAGAGAAATTCTTCACATTCAAGGAGGACAATGTGGAAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGTGATGAACACGGTGTTGATCCTACCGGACGTTACAAAGGAACCGCCGCTGAGTCCGATCTTCAGCTTGAACGTATCAATGTTTATTTCAATGAAGCTTCTGGTGGACGTTATGTTCCTAGGGCGGTTTTGATGGATCTAGAGCCTGGTACGATGGATAGTATCAGATCTGGTCCCTATGGACAGATCTTCCGTCCTGATAACTTTGTCTTTGGACAGTCTGGTGCTGGTAATAACTGGGCCAAAGGTCATTATACTGAAGGCGCTGAGTTGATTGATGCTGTTCTAGATGTTGTTCGTAAAGAAGCGGAGAATTGTGATTGCTTGCAAG : GATTCCAGGTTTGCCACTCACTTGGTGGAGGGACTGGATCTGGCATGGGAACACTACTGATTTCCAAG : CTCCAAAGGTGTCTGACACTGTTGTAGAACCATACAATGCTACACTGTCGGTGCACCAATTGGTGGAGAATGCCGATGAATGTATGGTCCTTGACAACGAAGCTCTATATGATATTTGTTTCAGAACTTTGAAGCTCACTACTCCAAGTT : TTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTATATGAATATACTGTATTACAGTAGCTTCTT</gDNA_template>
            <first_frame> S  F  P  F  L  P  S  S  S  S  S  S  S  S  L  L  L  L  I  L  S  F  L  S  S  I  F  F  I  K  K  T  K  R  K  *  E  K  F  F  T  F  K  E  D  N  V  E  T  K  S  V  P  N  S  G  K  L  S  V  M  N  T  V  L  I  L  P  D  V  T  K  E  P  P  L  S  P  I  F  S  L  N  V  S  M  F  I  S  M  K  L  L  V  D  V  M  F  L  G  R  F  *  W  I  *  S  L  V  R  W  I  V  S  D  L  V  P  M  D  R  S  S  V  L  I  T  L  S  L  D  S  L  V  L  V  I  T  G  P  K  V  I  I  L  K  A  L  S  *  L  M  L  F  *  M  L  F  V  K  K  R  R  I  V  I  A  C  K  :  D  S  R  F  A  T  H  L  V  E  G  L  D  L  A  W  E  H  Y  *  F  P  S :   S  K  G  V  *  H  C  C  R  T  I  Q  C  Y  T  V  G  A  P  I  G  G  E  C  R  *  M  Y  G  P  *  Q  R  S  S  I  *  Y  L  F  Q  N  F  E  A  H  Y  S  K  F :   W  *  L  E  P  F  D  L  C  N  H  E  W  C  Y  L  L  F  E  I  P  W  S  A  E  L  R  P  E  E  I  G  C  E  F  N  S  L  P  T  S  S  L  L  H  G  G  I  C  P  T  N  L  S  W  I  T  A  I  H  I  A  N  S  A  R  A  Y  S  T  N  V  G  C  Q  E  H  D  V  R  G  R  S  P  S  W  T  L  P  D  S  F  C  H  V  *  G  *  D  E  H  K  G  G  R  *  T  D  D  Q  C  A  E  Q  E  L  V  L  L  C  *  M  D  P  *  Q  C  Q  V  *  C  V  *  Y  P  T  N  W  A  E  D  G  I  H  V  C  W  K  F  N  L  H  S  G  D  V  *  K  G  E  *  A  V  Y  C  H  V  Q  A  Q  G  F  L  A  L  V  H  R  *  R  N  G  *  N  G  V  H  *  S  R  E  Q  H  E  *  F  G  C  R  I  S  T  I  P  G  C  Y  S  R  *  *  G  R  V  *  *  *  *  G  C  *  *  S  I  P  I  L  K  T  S  L  H  L  I  Y  C  W  F  V  Q  F  L  P  S  E  L  V  M  F  P  I  V  F  S  S  F  E  L  C  V  W  F  V  E  K  *  N  V  F  Y  W  S  I  *  I  Y  C  I  T  V  A  S  </first_frame>
            <second_frame>  L  S  H  F  S  L  H  L  H  L  H  L  H  L  F  F  F  L  F  S  H  S  S  H  Q  F  F  S  S  K  K  L  R  E  N  E  R  N  S  S  H  S  R  R  T  M  W  K  P  N  R  F  Q  I  L  G  S  Y  L  *  *  T  R  C  *  S  Y  R  T  L  Q  R  N  R  R  *  V  R  S  S  A  *  T  Y  Q  C  L  F  Q  *  S  F  W  W  T  L  C  S  *  G  G  F  D  G  S  R  A  W  Y  D  G  *  Y  Q  I  W  S  L  W  T  D  L  P  S  *  *  L  C  L  W  T  V  W  C  W  *  *  L  G  Q  R  S  L  Y  *  R  R  *  V  D  *  C  C  S  R  C  C  S  *  R  S  G  E  L  *  L  L  A  R :   I  P  G  L  P  L  T  W  W  R  D  W  I  W  H  G  N  T  T  D  F  Q   : A  P  K  V  S  D  T  V  V  E  P  Y  N  A  T  L  S  V  H  Q  L  V  E  N  A  D  E  C  M  V  L  D  N  E  A  L  Y  D  I  C  F  R  T  L  K  L  T  T  P  S   : F  G  D  L  N  H  L  I  S  A  T  M  S  G  V  T  C  C  L  R  F  P  G  Q  L  N  S  D  L  R  K  L  A  V  N  L  I  P  F  P  R  L  H  F  F  M  V  G  F  A  P  L  T  S  R  G  S  Q  Q  Y  I  S  L  T  V  P  E  L  T  Q  Q  M  W  D  A  K  N  M  M  C  A  A  D  P  R  H  G  R  Y  L  T  A  S  A  M  F  R  G  K  M  S  T  K  E  V  D  E  Q  M  I  N  V  Q  N  K  N  S  S  Y  F  V  E  W  I  P  N  N  V  K  S  S  V  C  D  I  P  P  T  G  L  K  M  A  S  T  F  V  G  N  S  T  S  I  Q  E  M  F  R  R  V  S  E  Q  F  T  A  M  F  R  R  K  A  F  L  H  W  Y  T  G  E  G  M  D  E  M  E  F  T  E  A  E  S  N  M  N  D  L  V  A  E  Y  Q  Q  Y  Q  D  A  T  A  D  D  E  E  E  Y  D  D  D  E  V  A  D  D  Q  Y  Q  S  *  K  L  L  Y  I  *  Y  I  V  G  L  F  N  F  C  Q  V  N  L  L  C  F  L  L  S  S  L  H  L  N  F  V  F  G  L  L  R  N  E  M  S  F  I  G  L  Y  E  Y  T  V  L  Q  *  L  L </second_frame>
            <third_frame>   F  P  I  S  P  F  I  F  I  F  I  F  I  S  S  S  S  Y  S  L  I  P  L  I  N  F  F  H  Q  K  N  *  E  K  M  R  E  I  L  H  I  Q  G  G  Q  C  G  N  Q  I  G  S  K  F  W  E  V  I  C  D  E  H  G  V  D  P  T  G  R  Y  K  G  T  A  A  E  S  D  L  Q  L  E  R  I  N  V  Y  F  N  E  A  S  G  G  R  Y  V  P  R  A  V  L  M  D  L  E  P  G  T  M  D  S  I  R  S  G  P  Y  G  Q  I  F  R  P  D  N  F  V  F  G  Q  S  G  A  G  N  N  W  A  K  G  H  Y  T  E  G  A  E  L  I  D  A  V  L  D  V  V  R  K  E  A  E  N  C  D  C  L  Q   : G  F  Q  V  C  H  S  L  G  G  G  T  G  S  G  M  G  T  L  L  I  S  K  :  L  Q  R  C  L  T  L  L  *  N  H  T  M  L  H  C  R  C  T  N  W  W  R  M  P  M  N  V  W  S  L  T  T  K  L  Y  M  I  F  V  S  E  L  *  S  S  L  L  Q  V  :  L  V  T  *  T  I  *  S  L  Q  P  *  V  V  L  L  A  V  *  D  S  L  V  S  *  T  Q  T  *  G  N  W  L  *  I  *  F  P  S  H  V  F  T  S  S  W  W  D  L  P  H  *  P  L  V  D  H  S  N  T  Y  R  *  Q  C  Q  S  L  L  N  K  C  G  M  P  R  T  *  C  A  R  Q  I  P  V  M  D  V  T  *  Q  L  L  P  C  L  G  V  R  *  A  Q  R  R  *  M  N  R  *  S  M  C  R  T  R  T  R  P  T  L  L  N  G  S  L  T  M  S  S  L  V  C  V  I  S  H  Q  L  G  *  R  W  H  P  R  L  L  E  I  Q  P  P  F  R  R  C  L  E  G  *  V  S  S  L  L  P  C  S  G  A  R  L  S  C  I  G  T  Q  V  K  E  W  M  K  W  S  S  L  K  P  R  A  T  *  M  I  W  L  Q  N  I  N  N  T  R  M  L  Q  Q  M  M  R  K  S  M  M  M  M  R  L  L  M  I  N  T  N  P  K  N  F  S  T  F  D  I  L  L  V  C  S  I  S  A  K  *  T  C  Y  V  S  Y  C  L  L  F  I  *  T  L  C  L  V  C  *  E  M  K  C  L  L  L  V  Y  M  N  I  L  Y  Y  S  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51087" stop="51097"/>
                    <exon start="52040" stop="52107"/>
                    <exon start="52160" stop="52309"/>
                    <exon start="52397" stop="53079"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLARIPGLPLTWWRDWIWHGNTTDFQAPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADDEEEYDDDEVADDQYQS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50699" stop="50899"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKFFTFKEDNVETKSVPNSGKLSVMNTVLILPDVTKEPPLSPIFSLNVSMFISMKLLVDVMFLGRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="52368" e_stop="53244"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="52368" e_stop="53244" e_length="877"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52368" stop="52837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52400" stop="53096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52410" stop="53161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52412" stop="53213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52412" stop="52922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52506" stop="53213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589304" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52614" stop="53213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414451" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52621" stop="53223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52621" stop="53223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52757" stop="53224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52791" stop="53244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52822" stop="53244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52834" stop="53213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52862" stop="53213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52862" stop="53213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52974" stop="53244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATTAATTTTGCCTATTTTCTCGTGTAGTTGGTGACTTGAACCATTTGATCTCTGCAACCATGAGTGGTGTTACTTGCTGTTTGAGATTCCCTGGTCAGCTGAACTCAGACCTGAGGAAATTGGCTGTGAATTTAATTCCCTTCCCACGTCTTCACTTCTTCATGGTGGGATTTGCCCCACTAACCTCTCGTGGATCACAGCAATACATATCGCTAACAGTGCCAGAGCTTACTCAACAAATGTGGGATGCCAAGAACATGATGTGCGCGGCAGATCCCCGTCATGGACGTTACCTGACAGCTTCTGCCATGTTTAGGGGTAAGATGAGCACAAAGGAGGTAGATGAACAGATGATCAATGTGCAGAACAAGAACTCGTCCTACTTTGTTGAATGGATCCCTAACAATGTCAAGTCTAGTGTGTGTGATATCCCACCAACTGGGCTGAAGATGGCATCCACGTTTGTTGGAAATTCAACCTCCATTCAGGAGATGTTTAGAAGGGTGAGTGAGCAGTTTACTGCCATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTCACTGAAGCCGAGAGCAACATGAATGATTTGGTTGCAGAATATCAACAATACCAGGATGCTACAGCAGATGATGAGGAAGAGTATGATGATGATGAGGTTGCTGATGATCAATACCAATCCTAAAAACTTCTCTACATTTGATATATTGTTGGTTTGTTCAATTTCTGCCAAGTGAACTTGTTATGTTTCCTATTGTCTTCTCTTCATTTGAACTTTGTGTTTGGTTTGTTGAGAAATGAAATGTCTTTTATTGGTCTATATGAATATACTGTATTACAGTAGCTTCTT</gDNA_template>
            <first_frame> *  L  I  L  P  I  F  S  C  S  W  *  L  E  P  F  D  L  C  N  H  E  W  C  Y  L  L  F  E  I  P  W  S  A  E  L  R  P  E  E  I  G  C  E  F  N  S  L  P  T  S  S  L  L  H  G  G  I  C  P  T  N  L  S  W  I  T  A  I  H  I  A  N  S  A  R  A  Y  S  T  N  V  G  C  Q  E  H  D  V  R  G  R  S  P  S  W  T  L  P  D  S  F  C  H  V  *  G  *  D  E  H  K  G  G  R  *  T  D  D  Q  C  A  E  Q  E  L  V  L  L  C  *  M  D  P  *  Q  C  Q  V  *  C  V  *  Y  P  T  N  W  A  E  D  G  I  H  V  C  W  K  F  N  L  H  S  G  D  V  *  K  G  E  *  A  V  Y  C  H  V  Q  A  Q  G  F  L  A  L  V  H  R  *  R  N  G  *  N  G  V  H  *  S  R  E  Q  H  E  *  F  G  C  R  I  S  T  I  P  G  C  Y  S  R  *  *  G  R  V  *  *  *  *  G  C  *  *  S  I  P  I  L  K  T  S  L  H  L  I  Y  C  W  F  V  Q  F  L  P  S  E  L  V  M  F  P  I  V  F  S  S  F  E  L  C  V  W  F  V  E  K  *  N  V  F  Y  W  S  I  *  I  Y  C  I  T  V  A  S  </first_frame>
            <second_frame>  D  *  F  C  L  F  S  R  V  V  G  D  L  N  H  L  I  S  A  T  M  S  G  V  T  C  C  L  R  F  P  G  Q  L  N  S  D  L  R  K  L  A  V  N  L  I  P  F  P  R  L  H  F  F  M  V  G  F  A  P  L  T  S  R  G  S  Q  Q  Y  I  S  L  T  V  P  E  L  T  Q  Q  M  W  D  A  K  N  M  M  C  A  A  D  P  R  H  G  R  Y  L  T  A  S  A  M  F  R  G  K  M  S  T  K  E  V  D  E  Q  M  I  N  V  Q  N  K  N  S  S  Y  F  V  E  W  I  P  N  N  V  K  S  S  V  C  D  I  P  P  T  G  L  K  M  A  S  T  F  V  G  N  S  T  S  I  Q  E  M  F  R  R  V  S  E  Q  F  T  A  M  F  R  R  K  A  F  L  H  W  Y  T  G  E  G  M  D  E  M  E  F  T  E  A  E  S  N  M  N  D  L  V  A  E  Y  Q  Q  Y  Q  D  A  T  A  D  D  E  E  E  Y  D  D  D  E  V  A  D  D  Q  Y  Q  S  *  K  L  L  Y  I  *  Y  I  V  G  L  F  N  F  C  Q  V  N  L  L  C  F  L  L  S  S  L  H  L  N  F  V  F  G  L  L  R  N  E  M  S  F  I  G  L  Y  E  Y  T  V  L  Q  *  L  L </second_frame>
            <third_frame>   I  N  F  A  Y  F  L  V  *  L  V  T  *  T  I  *  S  L  Q  P  *  V  V  L  L  A  V  *  D  S  L  V  S  *  T  Q  T  *  G  N  W  L  *  I  *  F  P  S  H  V  F  T  S  S  W  W  D  L  P  H  *  P  L  V  D  H  S  N  T  Y  R  *  Q  C  Q  S  L  L  N  K  C  G  M  P  R  T  *  C  A  R  Q  I  P  V  M  D  V  T  *  Q  L  L  P  C  L  G  V  R  *  A  Q  R  R  *  M  N  R  *  S  M  C  R  T  R  T  R  P  T  L  L  N  G  S  L  T  M  S  S  L  V  C  V  I  S  H  Q  L  G  *  R  W  H  P  R  L  L  E  I  Q  P  P  F  R  R  C  L  E  G  *  V  S  S  L  L  P  C  S  G  A  R  L  S  C  I  G  T  Q  V  K  E  W  M  K  W  S  S  L  K  P  R  A  T  *  M  I  W  L  Q  N  I  N  N  T  R  M  L  Q  Q  M  M  R  K  S  M  M  M  M  R  L  L  M  I  N  T  N  P  K  N  F  S  T  F  D  I  L  L  V  C  S  I  S  A  K  *  T  C  Y  V  S  Y  C  L  L  F  I  *  T  L  C  L  V  C  *  E  M  K  C  L  L  L  V  Y  M  N  I  L  Y  Y  S  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52375" stop="53079"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCLFSRVVGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADDEEEYDDDEVADDQYQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="53268" PGL_stop="52426"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53268" e_stop="52426"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="53268" e_stop="52426" e_length="843"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53268" stop="52542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53222" stop="52494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53217" stop="52426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53216" stop="52797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53207" stop="53020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53199" stop="52464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52980" stop="52571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438034" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTGCAATACACCAACAAGTACAAGAAGCTACTGTAATACAGTATATTCATATAGACCAATAAAAGACATTTCATTTCTCAACAAACCAAACACAAAGTTCAAATGAAGAGAAGACAATAGGAAACATAACAAGTTCACTTGGCAGAAATTGAACAAACCAACAATATATCAAATGTAGAGAAGTTTTTAGGATTGGTATTGATCATCAGCAACCTCATCATCATCATACTCTTCCTCATCATCTGCTGTAGCATCCTGGTATTGTTGATATTCTGCAACCAAATCATTCATGTTGCTCTCGGCTTCAGTGAACTCCATTTCATCCATTCCTTCACCTGTGTACCAATGCAAGAAAGCCTTGCGCCTGAACATGGCAGTAAACTGCTCACTCACCCTTCTAAACATCTCCTGAATGGAGGTTGAATTTCCAACAAACGTGGATGCCATCTTCAGCCCAGTTGGTGGGATATCACACACACTAGACTTGACATTGTTAGGGATCCATTCAACAAAGTAGGACGAGTTCTTGTTCTGCACATTGATCATCTGTTCATCTACCTCCTTTGTGCTCATCTTACCCCTAAACATGGCAGAAGCTGTCAGGTAACGTCCATGACGGGGATCTGCCGCGCACATCATGTTCTTGGCATCCCACATTTGTTGAGTAAGCTCTGGCACTGTTAGCGATATGTATTGCTGTGATCCACGAGAGGTTAGTGGGGCAAATCCCACCATGAAGAAGTGAAGACGTGGGAAGGGAATTAAATTCACAGCCAATTTCCTCAGGTCTGAGTTCAGCTGACCAGGGAATCTCAAACAGCAAGTAACACCACTCATGGT</gDNA_template>
            <first_frame> K  L  Q  Y  T  N  K  Y  K  K  L  L  *  Y  S  I  F  I  *  T  N  K  R  H  F  I  S  Q  Q  T  K  H  K  V  Q  M  K  R  R  Q  *  E  T  *  Q  V  H  L  A  E  I  E  Q  T  N  N  I  S  N  V  E  K  F  L  G  L  V  L  I  I  S  N  L  I  I  I  I  L  F  L  I  I  C  C  S  I  L  V  L  L  I  F  C  N  Q  I  I  H  V  A  L  G  F  S  E  L  H  F  I  H  S  F  T  C  V  P  M  Q  E  S  L  A  P  E  H  G  S  K  L  L  T  H  P  S  K  H  L  L  N  G  G  *  I  S  N  K  R  G  C  H  L  Q  P  S  W  W  D  I  T  H  T  R  L  D  I  V  R  D  P  F  N  K  V  G  R  V  L  V  L  H  I  D  H  L  F  I  Y  L  L  C  A  H  L  T  P  K  H  G  R  S  C  Q  V  T  S  M  T  G  I  C  R  A  H  H  V  L  G  I  P  H  L  L  S  K  L  W  H  C  *  R  Y  V  L  L  *  S  T  R  G  *  W  G  K  S  H  H  E  E  V  K  T  W  E  G  N  *  I  H  S  Q  F  P  Q  V  *  V  Q  L  T  R  E  S  Q  T  A  S  N  T  T  H  G </first_frame>
            <second_frame>  N  C  N  T  P  T  S  T  R  S  Y  C  N  T  V  Y  S  Y  R  P  I  K  D  I  S  F  L  N  K  P  N  T  K  F  K  *  R  E  D  N  R  K  H  N  K  F  T  W  Q  K  L  N  K  P  T  I  Y  Q  M  *  R  S  F  *  D  W  Y  *  S  S  A  T  S  S  S  S  Y  S  S  S  S  S  A  V  A  S  W  Y  C  *  Y  S  A  T  K  S  F  M  L  L  S  A  S  V  N  S  I  S  S  I  P  S  P  V  Y  Q  C  K  K  A  L  R  L  N  M  A  V  N  C  S  L  T  L  L  N  I  S  *  M  E  V  E  F  P  T  N  V  D  A  I  F  S  P  V  G  G  I  S  H  T  L  D  L  T  L  L  G  I  H  S  T  K  *  D  E  F  L  F  C  T  L  I  I  C  S  S  T  S  F  V  L  I  L  P  L  N  M  A  E  A  V  R  *  R  P  *  R  G  S  A  A  H  I  M  F  L  A  S  H  I  C  *  V  S  S  G  T  V  S  D  M  Y  C  C  D  P  R  E  V  S  G  A  N  P  T  M  K  K  *  R  R  G  K  G  I  K  F  T  A  N  F  L  R  S  E  F  S  *  P  G  N  L  K  Q  Q  V  T  P  L  M   </second_frame>
            <third_frame>   T  A  I  H  Q  Q  V  Q  E  A  T  V  I  Q  Y  I  H  I  D  Q  *  K  T  F  H  F  S  T  N  Q  T  Q  S  S  N  E  E  K  T  I  G  N  I  T  S  S  L  G  R  N  *  T  N  Q  Q  Y  I  K  C  R  E  V  F  R  I  G  I  D  H  Q  Q  P  H  H  H  H  T  L  P  H  H  L  L  *  H  P  G  I  V  D  I  L  Q  P  N  H  S  C  C  S  R  L  Q  *  T  P  F  H  P  F  L  H  L  C  T  N  A  R  K  P  C  A  *  T  W  Q  *  T  A  H  S  P  F  *  T  S  P  E  W  R  L  N  F  Q  Q  T  W  M  P  S  S  A  Q  L  V  G  Y  H  T  H  *  T  *  H  C  *  G  S  I  Q  Q  S  R  T  S  S  C  S  A  H  *  S  S  V  H  L  P  P  L  C  S  S  Y  P  *  T  W  Q  K  L  S  G  N  V  H  D  G  D  L  P  R  T  S  C  S  W  H  P  T  F  V  E  *  A  L  A  L  L  A  I  C  I  A  V  I  H  E  R  L  V  G  Q  I  P  P  *  R  S  E  D  V  G  R  E  L  N  S  Q  P  I  S  S  G  L  S  S  A  D  Q  G  I  S  N  S  K  *  H  H  S  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53136" stop="52843"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVHLAEIEQTNNISNVEKFLGLVLIISNLIIIILFLIICCSILVLLIFCNQIIHVALGFSELHFIHSFTCVPMQESLAPEHGSKLLTHPSKHLLNGG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52842" stop="52582"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISNKRGCHLQPSWWDITHTRLDIVRDPFNKVGRVLVLHIDHLFIYLLCAHLTPKHGRSCQVTSMTGICRAHHVLGIPHLLSKLWHC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="56668" PGL_stop="54996"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56668" e_stop="56293"/>
            <exon e_start="55938" e_stop="55876"/>
            <exon e_start="55765" e_stop="55691"/>
            <exon e_start="55328" e_stop="54996"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56668" e_stop="56293" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="56292" i_stop="55939" i_length="354"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55938" e_stop="55876" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55875" i_stop="55766" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55765" e_stop="55691" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="55690" i_stop="55329" i_length="362"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="55328" e_stop="54996" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56668" stop="56293"/>
              <exon start="55938" stop="55876"/>
              <exon start="55765" stop="55691"/>
              <exon start="55328" stop="55020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56667" stop="56293"/>
              <exon start="55938" stop="55876"/>
              <exon start="55765" stop="55705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56517" stop="56293"/>
              <exon start="55938" stop="55876"/>
              <exon start="55765" stop="55691"/>
              <exon start="55328" stop="54996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321354" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGAACCGCCGCAAAATTCAACAAGAATGAAAAACAGCAAGCAGAACGAACTGTGTGATTTGTTTCGTAATCCATCTAAAGATGAAATTGAAGTAGTAAAAATTCTACTCGATCTCGAAAATCTAGTGAGAGAAAGACAATATTGTTCGGTAATTTGGGGTTCCAAGAAGAGGAGATCTAATCGACGAATCGATTCTTCTTCTTCTCCCGTCGTCAACTCATCAAGTAGTTCGAAAATCGATGGAAACGAAATTGAACCCAAAATTAAAGCTGAAGTTACTAGCCCTGCTAGCCCTGCTACTCCTCTTTCATTTTCCCCAAGTGAATCTGATGAAAAATCCAAACATTCTTCTCGCAGAAGCTATAAACGAAAG : ACGAGGGAGGAGCTAATGGATAAAATAAAACAATTATCTCAATGCAGAGAATCGCTTACAGGG : GAAGTGGAGAATGTTCGTAATTACTACAATAATCAAAAAGCTTACAATATGAAGTTGAAAGCAATGAAAGAAGAG : GTAACAAGAATGGTGAATTTCCAAGGGGGTGGTGTTAATTTAGGTCAACTTTACTCTAATCCTGGAATAGAGCCCAATCGTCAACAGCCGTTCATTATGGATCAGGTTGCTTCAAGATCAGAAGCTATTCATAGATTTCAATACCCATTGGGCCAGCTGCAACAGGCCCAACATTTGTACTCAAATGGGTTGGGCCCAGGCCCAATGGGCCTTCCTGATCTGAATGTTAAGGTGGAAGAGGCTTTCGCATTGGACCAGTTCGATATCGATAGAATGAATGTTGAAAGGAAGGCCCAATATGCTGAAGCTAGAAGGAAGAGGAGGATTAAAAGA</gDNA_template>
            <first_frame> F  R  T  A  A  K  F  N  K  N  E  K  Q  Q  A  E  R  T  V  *  F  V  S  *  S  I  *  R  *  N  *  S  S  K  N  S  T  R  S  R  K  S  S  E  R  K  T  I  L  F  G  N  L  G  F  Q  E  E  E  I  *  S  T  N  R  F  F  F  F  S  R  R  Q  L  I  K  *  F  E  N  R  W  K  R  N  *  T  Q  N  *  S  *  S  Y  *  P  C  *  P  C  Y  S  S  F  I  F  P  K  *  I  *  *  K  I  Q  T  F  F  S  Q  K  L  *  T  K   : D  E  G  G  A  N  G  *  N  K  T  I  I  S  M  Q  R  I  A  Y  R   : G  S  G  E  C  S  *  L  L  Q  *  S  K  S  L  Q  Y  E  V  E  S  N  E  R  R   : G  N  K  N  G  E  F  P  R  G  W  C  *  F  R  S  T  L  L  *  S  W  N  R  A  Q  S  S  T  A  V  H  Y  G  S  G  C  F  K  I  R  S  Y  S  *  I  S  I  P  I  G  P  A  A  T  G  P  T  F  V  L  K  W  V  G  P  R  P  N  G  P  S  *  S  E  C  *  G  G  R  G  F  R  I  G  P  V  R  Y  R  *  N  E  C  *  K  E  G  P  I  C  *  S  *  K  E  E  E  D  *  K  </first_frame>
            <second_frame>  S  E  P  P  Q  N  S  T  R  M  K  N  S  K  Q  N  E  L  C  D  L  F  R  N  P  S  K  D  E  I  E  V  V  K  I  L  L  D  L  E  N  L  V  R  E  R  Q  Y  C  S  V  I  W  G  S  K  K  R  R  S  N  R  R  I  D  S  S  S  S  P  V  V  N  S  S  S  S  S  K  I  D  G  N  E  I  E  P  K  I  K  A  E  V  T  S  P  A  S  P  A  T  P  L  S  F  S  P  S  E  S  D  E  K  S  K  H  S  S  R  R  S  Y  K  R  K  :  T  R  E  E  L  M  D  K  I  K  Q  L  S  Q  C  R  E  S  L  T  G  :  E  V  E  N  V  R  N  Y  Y  N  N  Q  K  A  Y  N  M  K  L  K  A  M  K  E  E  :  V  T  R  M  V  N  F  Q  G  G  G  V  N  L  G  Q  L  Y  S  N  P  G  I  E  P  N  R  Q  Q  P  F  I  M  D  Q  V  A  S  R  S  E  A  I  H  R  F  Q  Y  P  L  G  Q  L  Q  Q  A  Q  H  L  Y  S  N  G  L  G  P  G  P  M  G  L  P  D  L  N  V  K  V  E  E  A  F  A  L  D  Q  F  D  I  D  R  M  N  V  E  R  K  A  Q  Y  A  E  A  R  R  K  R  R  I  K  R </second_frame>
            <third_frame>   Q  N  R  R  K  I  Q  Q  E  *  K  T  A  S  R  T  N  C  V  I  C  F  V  I  H  L  K  M  K  L  K  *  *  K  F  Y  S  I  S  K  I  *  *  E  K  D  N  I  V  R  *  F  G  V  P  R  R  G  D  L  I  D  E  S  I  L  L  L  L  P  S  S  T  H  Q  V  V  R  K  S  M  E  T  K  L  N  P  K  L  K  L  K  L  L  A  L  L  A  L  L  L  L  F  H  F  P  Q  V  N  L  M  K  N  P  N  I  L  L  A  E  A  I  N  E  R :   R  G  R  S  *  W  I  K  *  N  N  Y  L  N  A  E  N  R  L  Q  G :   K  W  R  M  F  V  I  T  T  I  I  K  K  L  T  I  *  S  *  K  Q  *  K  K  R :   *  Q  E  W  *  I  S  K  G  V  V  L  I  *  V  N  F  T  L  I  L  E  *  S  P  I  V  N  S  R  S  L  W  I  R  L  L  Q  D  Q  K  L  F  I  D  F  N  T  H  W  A  S  C  N  R  P  N  I  C  T  Q  M  G  W  A  Q  A  Q  W  A  F  L  I  *  M  L  R  W  K  R  L  S  H  W  T  S  S  I  S  I  E  *  M  L  K  G  R  P  N  M  L  K  L  E  G  R  G  G  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56667" stop="56293"/>
                    <exon start="55938" stop="55876"/>
                    <exon start="55765" stop="55691"/>
                    <exon start="55328" stop="54996"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEPPQNSTRMKNSKQNELCDLFRNPSKDEIEVVKILLDLENLVRERQYCSVIWGSKKRRSNRRIDSSSSPVVNSSSSSKIDGNEIEPKIKAEVTSPASPATPLSFSPSESDEKSKHSSRRSYKRKTREELMDKIKQLSQCRESLTGEVENVRNYYNNQKAYNMKLKAMKEEVTRMVNFQGGGVNLGQLYSNPGIEPNRQQPFIMDQVASRSEAIHRFQYPLGQLQQAQHLYSNGLGPGPMGLPDLNVKVEEAFALDQFDIDRMNVERKAQYAEARRKRRIKR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="58566" PGL_stop="58148"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58566" e_stop="58148"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="58566" e_stop="58148" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58566" stop="58148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58566" stop="58273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58566" stop="58289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTATAGCAAGAAGATATATGTTTTTCTTTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTTCAATTGTATAATTCGCAATTGTATAATTCGTTGACCTTTTTCTCTGCAATACTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAAATATATATTTTTGCATGTGTATACACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAGGAGAGCGAGAATGGAGAGTGGCGAGCGAGATTTCTGGGAAAGAGACGCTGGCAAATTTTAGCTAACGTTTGCTATGGAACACAATTAAATCAAACCTAGCTATTCCATTTATTTTAGGTTATTAA</gDNA_template>
            <first_frame> C  I  A  R  R  Y  M  F  F  F  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  S  I  V  *  F  A  I  V  *  F  V  D  L  F  L  C  N  T  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  K  Y  I  F  L  H  V  Y  T  Q  F  S  L  A  L  Y  K  I  E  T  E  L  Y  T  S  V  Y  K  A  R  E  E  S  E  N  G  E  W  R  A  R  F  L  G  K  R  R  W  Q  I  L  A  N  V  C  Y  G  T  Q  L  N  Q  T  *  L  F  H  L  F  *  V  I   </first_frame>
            <second_frame>  V  *  Q  E  D  I  C  F  S  F  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  T  F  F  S  A  I  L  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  N  I  Y  F  C  M  C  I  H  N  F  L  S  L  Y  T  K  *  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  W  E  R  D  A  G  K  F  *  L  T  F  A  M  E  H  N  *  I  K  P  S  Y  S  I  Y  F  R  L  L  </second_frame>
            <third_frame>   Y  S  K  K  I  Y  V  F  L  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  F  N  C  I  I  R  N  C  I  I  R  *  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  S  G  K  E  T  L  A  N  F  S  *  R  L  L  W  N  T  I  K  S  N  L  A  I  P  F  I  L  G  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58407" stop="58174"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMFVNCIIKCITRKYIFLHVYTQFSLALYKIETELYTSVYKAREESENGEWRARFLGKRRWQILANVCYGTQLNQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="64736" PGL_stop="61808"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64736" e_stop="64425"/>
            <exon e_start="64345" e_stop="64223"/>
            <exon e_start="64142" e_stop="64072"/>
            <exon e_start="62320" e_stop="61828"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.467" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64736" e_stop="64425" e_length="312"/>
          </exon>
          <intron i_serial="1" don_prob="0.467" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64424" i_stop="64346" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64345" e_stop="64223" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.967">
            <gDNA_intron_boundary i_start="64222" i_stop="64143" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64142" e_stop="64072" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.919" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64071" i_stop="62321" i_length="1751"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62320" e_stop="61828" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64736" stop="64425"/>
              <exon start="64345" stop="64223"/>
              <exon start="64142" stop="64072"/>
              <exon start="62320" stop="62208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392665" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64345" stop="64223"/>
              <exon start="64142" stop="64072"/>
              <exon start="62320" stop="61828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397924" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64343" stop="64223"/>
              <exon start="64142" stop="64072"/>
              <exon start="62320" stop="62006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64240" stop="64223"/>
              <exon start="64142" stop="64072"/>
              <exon start="62320" stop="61839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64130" stop="64072"/>
              <exon start="62320" stop="61829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244645" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTCACACTTCACATTTTTACAGCTGATTTTTTCGAATTGAATCCTGAAAATGTCGTCTGAAGACTCAAAGCCAGTGAGGAAAGTGGAAAGTGACGACGGAGAAAGCATTGGGTCTCTTTTTAACAGCAAAAAGAAACCTAACAATAATGCCGCTTCAAAATCTCAGCCTCTCAAAAAAGCTAAGATTAAGAAAGAAGAAAAAGATGATGATTTCGAAGAACCCATTTCGAAAAAGAGTCCAAAAATTGTTAAGCCCAAGAAGGAAGAACCTTCACCCGTGTCAAAGAAAAGTTCGAGTAGAACTGATAAA : AAAGTTGTAAAGAAAGAGGAAGAGGATAAGAAGAAAGGAACCAAAAATGGAGACACCGTTGTGAAGAAGAAGGAAAAGAAAGTTTATGATTTGCCTGGACAGAAGAGAGACGCTCCTGAGGAA : AGAGACCCTTTAAGGATTTTCTATGAATCCTTGTATCAGCAAGTGCCAGAAAGTGAACTAGCAGCTATTTG : GATGATGGAGTCAGGTTTGCTTCCAAAGGACTTGGCGAAGAAAGTTTTTGAGAAGAAACAAAAGAAGGCCCAGCAGCTAAAGCTTGGTTCACCTCTGAAAACGGTTGTGACTGTGAAAAAGACCACGGAGTCTGTTACTATTAAGAAGACAACATCCTCGTCAACCACGCCATCAACACAGAAAAAGAAAACACCAGATTCTGGAAAAACGGAATCAATGCAGCGGTCAAAGAAACGGAAGCTTAAGGATGATTCTTCTGAAGAAGACTCAGATGATGGTTTCATTGCAACTCTTAAAAGCACAAAGAGACAGAAAGCCTCTTGATGTTTCTAATGGCTTAGTGAAATTGTAGATGAGAAATTAAATACTCTGTTACATGCATTTCAATTTCTCCATTATGTAAAAGTTGACCTTTGTTCTCTCATTTTCTCCATTGTGTTTTTCCAGGCTCTAAACTTTGAATACAATTAAAAAAAAATGTATCTCAAACTT</gDNA_template>
            <first_frame> P  S  H  F  T  F  L  Q  L  I  F  S  N  *  I  L  K  M  S  S  E  D  S  K  P  V  R  K  V  E  S  D  D  G  E  S  I  G  S  L  F  N  S  K  K  K  P  N  N  N  A  A  S  K  S  Q  P  L  K  K  A  K  I  K  K  E  E  K  D  D  D  F  E  E  P  I  S  K  K  S  P  K  I  V  K  P  K  K  E  E  P  S  P  V  S  K  K  S  S  S  R  T  D  K  :  K  V  V  K  K  E  E  E  D  K  K  K  G  T  K  N  G  D  T  V  V  K  K  K  E  K  K  V  Y  D  L  P  G  Q  K  R  D  A  P  E  E  :  R  D  P  L  R  I  F  Y  E  S  L  Y  Q  Q  V  P  E  S  E  L  A  A  I  W :   M  M  E  S  G  L  L  P  K  D  L  A  K  K  V  F  E  K  K  Q  K  K  A  Q  Q  L  K  L  G  S  P  L  K  T  V  V  T  V  K  K  T  T  E  S  V  T  I  K  K  T  T  S  S  S  T  T  P  S  T  Q  K  K  K  T  P  D  S  G  K  T  E  S  M  Q  R  S  K  K  R  K  L  K  D  D  S  S  E  E  D  S  D  D  G  F  I  A  T  L  K  S  T  K  R  Q  K  A  S  *  C  F  *  W  L  S  E  I  V  D  E  K  L  N  T  L  L  H  A  F  Q  F  L  H  Y  V  K  V  D  L  C  S  L  I  F  S  I  V  F  F  Q  A  L  N  F  E  Y  N  *  K  K  M  Y  L  K  L </first_frame>
            <second_frame>  L  H  T  S  H  F  Y  S  *  F  F  R  I  E  S  *  K  C  R  L  K  T  Q  S  Q  *  G  K  W  K  V  T  T  E  K  A  L  G  L  F  L  T  A  K  R  N  L  T  I  M  P  L  Q  N  L  S  L  S  K  K  L  R  L  R  K  K  K  K  M  M  I  S  K  N  P  F  R  K  R  V  Q  K  L  L  S  P  R  R  K  N  L  H  P  C  Q  R  K  V  R  V  E  L  I  K :   K  L  *  R  K  R  K  R  I  R  R  K  E  P  K  M  E  T  P  L  *  R  R  R  K  R  K  F  M  I  C  L  D  R  R  E  T  L  L  R  K :   E  T  L  *  G  F  S  M  N  P  C  I  S  K  C  Q  K  V  N  *  Q  L  F   : G  *  W  S  Q  V  C  F  Q  R  T  W  R  R  K  F  L  R  R  N  K  R  R  P  S  S  *  S  L  V  H  L  *  K  R  L  *  L  *  K  R  P  R  S  L  L  L  L  R  R  Q  H  P  R  Q  P  R  H  Q  H  R  K  R  K  H  Q  I  L  E  K  R  N  Q  C  S  G  Q  R  N  G  S  L  R  M  I  L  L  K  K  T  Q  M  M  V  S  L  Q  L  L  K  A  Q  R  D  R  K  P  L  D  V  S  N  G  L  V  K  L  *  M  R  N  *  I  L  C  Y  M  H  F  N  F  S  I  M  *  K  L  T  F  V  L  S  F  S  P  L  C  F  S  R  L  *  T  L  N  T  I  K  K  K  C  I  S  N   </second_frame>
            <third_frame>   F  T  L  H  I  F  T  A  D  F  F  E  L  N  P  E  N  V  V  *  R  L  K  A  S  E  E  S  G  K  *  R  R  R  K  H  W  V  S  F  *  Q  Q  K  E  T  *  Q  *  C  R  F  K  I  S  A  S  Q  K  S  *  D  *  E  R  R  K  R  *  *  F  R  R  T  H  F  E  K  E  S  K  N  C  *  A  Q  E  G  R  T  F  T  R  V  K  E  K  F  E  *  N  *  *   : K  S  C  K  E  R  G  R  G  *  E  E  R  N  Q  K  W  R  H  R  C  E  E  E  G  K  E  S  L  *  F  A  W  T  E  E  R  R  S  *  G   : K  R  P  F  K  D  F  L  *  I  L  V  S  A  S  A  R  K  *  T  S  S  Y  L  :  D  D  G  V  R  F  A  S  K  G  L  G  E  E  S  F  *  E  E  T  K  E  G  P  A  A  K  A  W  F  T  S  E  N  G  C  D  C  E  K  D  H  G  V  C  Y  Y  *  E  D  N  I  L  V  N  H  A  I  N  T  E  K  E  N  T  R  F  W  K  N  G  I  N  A  A  V  K  E  T  E  A  *  G  *  F  F  *  R  R  L  R  *  W  F  H  C  N  S  *  K  H  K  E  T  E  S  L  L  M  F  L  M  A  *  *  N  C  R  *  E  I  K  Y  S  V  T  C  I  S  I  S  P  L  C  K  S  *  P  L  F  S  H  F  L  H  C  V  F  P  G  S  K  L  *  I  Q  L  K  K  N  V  S  Q  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64694" stop="64425"/>
                    <exon start="64345" stop="64223"/>
                    <exon start="64142" stop="64072"/>
                    <exon start="62320" stop="61996"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILKMSSEDSKPVRKVESDDGESIGSLFNSKKKPNNNAASKSQPLKKAKIKKEEKDDDFEEPISKKSPKIVKPKKEEPSPVSKKSSSRTDKKVVKKEEEDKKKGTKNGDTVVKKKEKKVYDLPGQKRDAPEERDPLRIFYESLYQQVPESELAAIWMMESGLLPKDLAKKVFEKKQKKAQQLKLGSPLKTVVTVKKTTESVTIKKTTSSSTTPSTQKKKTPDSGKTESMQRSKKRKLKDDSSEEDSDDGFIATLKSTKRQKAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="64345" e_stop="64340"/>
            <exon e_start="64245" e_stop="64223"/>
            <exon e_start="64142" e_stop="64072"/>
            <exon e_start="62320" e_stop="61808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.667"/>
          <exon-intron don_prob="0.984" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="64345" e_stop="64340" e_length="6"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64339" i_stop="64246" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64245" e_stop="64223" e_length="23"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.967">
            <gDNA_intron_boundary i_start="64222" i_stop="64143" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64142" e_stop="64072" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.919" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64071" i_stop="62321" i_length="1751"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="62320" e_stop="61808" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64345" stop="64340"/>
              <exon start="64245" stop="64223"/>
              <exon start="64142" stop="64072"/>
              <exon start="62320" stop="61808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353023" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64240" stop="64223"/>
              <exon start="64142" stop="64072"/>
              <exon start="62320" stop="61839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64130" stop="64072"/>
              <exon start="62320" stop="61829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244645" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTT : AGAAGAGAGACGCTCCTGAGGAA : AGAGACCCTTTAAGGATTTTCTATGAATCCTTGTATCAGCAAGTGCCAGAAAGTGAACTAGCAGCTATTTG : GATGATGGAGTCAGGTTTGCTTCCAAAGGACTTGGCGAAGAAAGTTTTTGAGAAGAAACAAAAGAAGGCCCAGCAGCTAAAGCTTGGTTCACCTCTGAAAACGGTTGTGACTGTGAAAAAGACCACGGAGTCTGTTACTATTAAGAAGACAACATCCTCGTCAACCACGCCATCAACACAGAAAAAGAAAACACCAGATTCTGGAAAAACGGAATCAATGCAGCGGTCAAAGAAACGGAAGCTTAAGGATGATTCTTCTGAAGAAGACTCAGATGATGGTTTCATTGCAACTCTTAAAAGCACAAAGAGACAGAAAGCCTCTTGATGTTTCTAATGGCTTAGTGAAATTGTAGATGAGAAATTAAATACTCTGTTACATGCATTTCAATTTCTCCATTATGTAAAAGTTGACCTTTGTTCTCTCATTTTCTCCATTGTGTTTTTCCAGGCTCTAAACTTTGAATACAATTAAAAAAAAATGTATCTCAAACTTCATTCATTGCCCTTAAGAAA</gDNA_template>
            <first_frame> K  V  :  R  R  E  T  L  L  R  K :   E  T  L  *  G  F  S  M  N  P  C  I  S  K  C  Q  K  V  N  *  Q  L  F   : G  *  W  S  Q  V  C  F  Q  R  T  W  R  R  K  F  L  R  R  N  K  R  R  P  S  S  *  S  L  V  H  L  *  K  R  L  *  L  *  K  R  P  R  S  L  L  L  L  R  R  Q  H  P  R  Q  P  R  H  Q  H  R  K  R  K  H  Q  I  L  E  K  R  N  Q  C  S  G  Q  R  N  G  S  L  R  M  I  L  L  K  K  T  Q  M  M  V  S  L  Q  L  L  K  A  Q  R  D  R  K  P  L  D  V  S  N  G  L  V  K  L  *  M  R  N  *  I  L  C  Y  M  H  F  N  F  S  I  M  *  K  L  T  F  V  L  S  F  S  P  L  C  F  S  R  L  *  T  L  N  T  I  K  K  K  C  I  S  N  F  I  H  C  P  *  E  </first_frame>
            <second_frame>  K  L :   E  E  R  R  S  *  G   : K  R  P  F  K  D  F  L  *  I  L  V  S  A  S  A  R  K  *  T  S  S  Y  L  :  D  D  G  V  R  F  A  S  K  G  L  G  E  E  S  F  *  E  E  T  K  E  G  P  A  A  K  A  W  F  T  S  E  N  G  C  D  C  E  K  D  H  G  V  C  Y  Y  *  E  D  N  I  L  V  N  H  A  I  N  T  E  K  E  N  T  R  F  W  K  N  G  I  N  A  A  V  K  E  T  E  A  *  G  *  F  F  *  R  R  L  R  *  W  F  H  C  N  S  *  K  H  K  E  T  E  S  L  L  M  F  L  M  A  *  *  N  C  R  *  E  I  K  Y  S  V  T  C  I  S  I  S  P  L  C  K  S  *  P  L  F  S  H  F  L  H  C  V  F  P  G  S  K  L  *  I  Q  L  K  K  N  V  S  Q  T  S  F  I  A  L  K  K </second_frame>
            <third_frame>   S   : *  K  R  D  A  P  E  E  :  R  D  P  L  R  I  F  Y  E  S  L  Y  Q  Q  V  P  E  S  E  L  A  A  I  W :   M  M  E  S  G  L  L  P  K  D  L  A  K  K  V  F  E  K  K  Q  K  K  A  Q  Q  L  K  L  G  S  P  L  K  T  V  V  T  V  K  K  T  T  E  S  V  T  I  K  K  T  T  S  S  S  T  T  P  S  T  Q  K  K  K  T  P  D  S  G  K  T  E  S  M  Q  R  S  K  K  R  K  L  K  D  D  S  S  E  E  D  S  D  D  G  F  I  A  T  L  K  S  T  K  R  Q  K  A  S  *  C  F  *  W  L  S  E  I  V  D  E  K  L  N  T  L  L  H  A  F  Q  F  L  H  Y  V  K  V  D  L  C  S  L  I  F  S  I  V  F  F  Q  A  L  N  F  E  Y  N  *  K  K  M  Y  L  K  L  H  S  L  P  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64243" stop="64223"/>
                    <exon start="64142" stop="64072"/>
                    <exon start="62320" stop="61996"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRDAPEERDPLRIFYESLYQQVPESELAAIWMMESGLLPKDLAKKVFEKKQKKAQQLKLGSPLKTVVTVKKTTESVTIKKTTSSSTTPSTQKKKTPDSGKTESMQRSKKRKLKDDSSEEDSDDGFIATLKSTKRQKAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="61829" PGL_stop="62311"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61829" e_stop="62311"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="61829" e_stop="62311" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61829" stop="62311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61829" stop="62311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTTGAGATACATTTTTTTTTAATTGTATTCAAAGTTTAGAGCCTGGAAAAACACAATGGAGAAAATGAGAGAACAAAGGTCAACTTTTACATAATGGAGAAATTGAAATGCATGTAACAGAGTATTTAATTTCTCATCTACAATTTCACTAAGCCATTAGAAACATCAAGAGGCTTTCTGTCTCTTTGTGCTTTTAAGAGTTGCAATGAAACCATCATCTGAGTCTTCTTCAGAAGAATCATCCTTAAGCTTCCGTTTCTTTGACCGCTGCATTGATTCCGTTTTTCCAGAATCTGGTGTTTTCTTTTTCTGTGTTGATGGCGTGGTTGACGAGGATGTTGTCTTCTTAATAGTAACAGACTCCGTGGTCTTTTTCACAGTCACAACCGTTTTCAGAGGTGAACCAAGCTTTAGCTGCTGGGCCTTCTTTTGTTTCTTCTCAAAAACTTTCTTCGCCAAGTCCTTTGGAAGCAAACCTGAC</gDNA_template>
            <first_frame> S  L  R  Y  I  F  F  *  L  Y  S  K  F  R  A  W  K  N  T  M  E  K  M  R  E  Q  R  S  T  F  T  *  W  R  N  *  N  A  C  N  R  V  F  N  F  S  S  T  I  S  L  S  H  *  K  H  Q  E  A  F  C  L  F  V  L  L  R  V  A  M  K  P  S  S  E  S  S  S  E  E  S  S  L  S  F  R  F  F  D  R  C  I  D  S  V  F  P  E  S  G  V  F  F  F  C  V  D  G  V  V  D  E  D  V  V  F  L  I  V  T  D  S  V  V  F  F  T  V  T  T  V  F  R  G  E  P  S  F  S  C  W  A  F  F  C  F  F  S  K  T  F  F  A  K  S  F  G  S  K  P  D </first_frame>
            <second_frame>  V  *  D  T  F  F  F  N  C  I  Q  S  L  E  P  G  K  T  Q  W  R  K  *  E  N  K  G  Q  L  L  H  N  G  E  I  E  M  H  V  T  E  Y  L  I  S  H  L  Q  F  H  *  A  I  R  N  I  K  R  L  S  V  S  L  C  F  *  E  L  Q  *  N  H  H  L  S  L  L  Q  K  N  H  P  *  A  S  V  S  L  T  A  A  L  I  P  F  F  Q  N  L  V  F  S  F  S  V  L  M  A  W  L  T  R  M  L  S  S  *  *  *  Q  T  P  W  S  F  S  Q  S  Q  P  F  S  E  V  N  Q  A  L  A  A  G  P  S  F  V  S  S  Q  K  L  S  S  P  S  P  L  E  A  N  L   </second_frame>
            <third_frame>   F  E  I  H  F  F  L  I  V  F  K  V  *  S  L  E  K  H  N  G  E  N  E  R  T  K  V  N  F  Y  I  M  E  K  L  K  C  M  *  Q  S  I  *  F  L  I  Y  N  F  T  K  P  L  E  T  S  R  G  F  L  S  L  C  A  F  K  S  C  N  E  T  I  I  *  V  F  F  R  R  I  I  L  K  L  P  F  L  *  P  L  H  *  F  R  F  S  R  I  W  C  F  L  F  L  C  *  W  R  G  *  R  G  C  C  L  L  N  S  N  R  L  R  G  L  F  H  S  H  N  R  F  Q  R  *  T  K  L  *  L  L  G  L  L  L  F  L  L  K  N  F  L  R  Q  V  L  W  K  Q  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61991" stop="62311"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHQEAFCLFVLLRVAMKPSSESSSEESSLSFRFFDRCIDSVFPESGVFFFCVDGVVDEDVVFLIVTDSVVFFTVTTVFRGEPSFSCWAFFCFFSKTFFAKSFGSKPD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="73142" PGL_stop="70773"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73142" e_stop="72889"/>
            <exon e_start="72783" e_stop="72672"/>
            <exon e_start="71170" e_stop="71097"/>
            <exon e_start="70965" e_stop="70773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="0.988"/>
          <exon-intron don_prob="0.890" acc_prob="0.899" e_score="0.991"/>
          <exon-intron don_prob="0.988" acc_prob="0.989" e_score="0.959"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="73142" e_stop="72889" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72888" i_stop="72784" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="72783" e_stop="72672" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.890" acc_prob="0.899">
            <gDNA_intron_boundary i_start="72671" i_stop="71171" i_length="1501"/>
          </intron>
          <exon e_serial="3" e_score="0.959">
            <gDNA_exon_boundary e_start="71170" e_stop="71097" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.989">
            <gDNA_intron_boundary i_start="71096" i_stop="70966" i_length="131"/>
          </intron>
          <exon e_serial="4" e_score="0.953">
            <gDNA_exon_boundary e_start="70965" e_stop="70773" e_length="193"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73142" stop="72889"/>
              <exon start="72783" stop="72672"/>
              <exon start="71170" stop="71097"/>
              <exon start="70965" stop="70781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73141" stop="72889"/>
              <exon start="72783" stop="72672"/>
              <exon start="71170" stop="71097"/>
              <exon start="70965" stop="70773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340707" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCATTGCGCTCTCTCTCTTTCAAACTCTAAAAGTTTCTTCAATCTGCAATGGCGAAGTCCAAAAAACCAAAAAATTCTTCCGATAGAGAAAAATGGAACAAAGTGTTCAATGCTTTAGTTCACATGTTGACATCACAGCAGACGCAGCTTGAATCCCTTGCAAAAGAGAGAATGATTCTTGAAGATCGGATAAAATTACAGAATGATCGATGGGTATCTGATATTCATAGATTTCAAGAACAAATTTATGAG : ATGAGGAAAAACTTTACAATTCAAGAGATGGAGCGCATGCTTGAGGTTGCGAAATCGGAGTTTGTTGTTGGTTTGAAGCAACGAGATGTTGCCGTGTTCCAAAGAAAGCTCG : AAAATGCAGATGGTGAACTGGCTGACTTCAGAGAATGGTTTGACTACCTCTCTCAGAGATGCTCTGAGCCAAAT : GATGTACCAAATGCTGCAACAAATGAAAAGTCGGAGACAAGAAAGAAGGCTTGGGAAGATGAGGTGAGGAGGCTTAAAACAGAAAATGAGAAGCTTACTTCAGAGAAAAATTCTGAGATTTCTGCCCTCTTGGCAGAAAAGAATTTTATTTGGAACCAGTTCAACAAACTGGAGCACGACATGACTGAGCAAT</gDNA_template>
            <first_frame> L  H  C  A  L  S  L  S  N  S  K  S  F  F  N  L  Q  W  R  S  P  K  N  Q  K  I  L  P  I  E  K  N  G  T  K  C  S  M  L  *  F  T  C  *  H  H  S  R  R  S  L  N  P  L  Q  K  R  E  *  F  L  K  I  G  *  N  Y  R  M  I  D  G  Y  L  I  F  I  D  F  K  N  K  F  M  R :   *  G  K  T  L  Q  F  K  R  W  S  A  C  L  R  L  R  N  R  S  L  L  L  V  *  S  N  E  M  L  P  C  S  K  E  S  S  :  K  M  Q  M  V  N  W  L  T  S  E  N  G  L  T  T  S  L  R  D  A  L  S  Q  M :   M  Y  Q  M  L  Q  Q  M  K  S  R  R  Q  E  R  R  L  G  K  M  R  *  G  G  L  K  Q  K  M  R  S  L  L  Q  R  K  I  L  R  F  L  P  S  W  Q  K  R  I  L  F  G  T  S  S  T  N  W  S  T  T  *  L  S  N </first_frame>
            <second_frame>  S  I  A  L  S  L  F  Q  T  L  K  V  S  S  I  C  N  G  E  V  Q  K  T  K  K  F  F  R  *  R  K  M  E  Q  S  V  Q  C  F  S  S  H  V  D  I  T  A  D  A  A  *  I  P  C  K  R  E  N  D  S  *  R  S  D  K  I  T  E  *  S  M  G  I  *  Y  S  *  I  S  R  T  N  L  *   : D  E  E  K  L  Y  N  S  R  D  G  A  H  A  *  G  C  E  I  G  V  C  C  W  F  E  A  T  R  C  C  R  V  P  K  K  A  R :   K  C  R  W  *  T  G  *  L  Q  R  M  V  *  L  P  L  S  E  M  L  *  A  K   : *  C  T  K  C  C  N  K  *  K  V  G  D  K  K  E  G  L  G  R  *  G  E  E  A  *  N  R  K  *  E  A  Y  F  R  E  K  F  *  D  F  C  P  L  G  R  K  E  F  Y  L  E  P  V  Q  Q  T  G  A  R  H  D  *  A   </second_frame>
            <third_frame>   P  L  R  S  L  S  F  K  L  *  K  F  L  Q  S  A  M  A  K  S  K  K  P  K  N  S  S  D  R  E  K  W  N  K  V  F  N  A  L  V  H  M  L  T  S  Q  Q  T  Q  L  E  S  L  A  K  E  R  M  I  L  E  D  R  I  K  L  Q  N  D  R  W  V  S  D  I  H  R  F  Q  E  Q  I  Y  E  :  M  R  K  N  F  T  I  Q  E  M  E  R  M  L  E  V  A  K  S  E  F  V  V  G  L  K  Q  R  D  V  A  V  F  Q  R  K  L   : E  N  A  D  G  E  L  A  D  F  R  E  W  F  D  Y  L  S  Q  R  C  S  E  P  N  :  D  V  P  N  A  A  T  N  E  K  S  E  T  R  K  K  A  W  E  D  E  V  R  R  L  K  T  E  N  E  K  L  T  S  E  K  N  S  E  I  S  A  L  L  A  E  K  N  F  I  W  N  Q  F  N  K  L  E  H  D  M  T  E  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73110" stop="72889"/>
                    <exon start="72783" stop="72672"/>
                    <exon start="71170" stop="71097"/>
                    <exon start="70965" stop="70774"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLQSAMAKSKKPKNSSDREKWNKVFNALVHMLTSQQTQLESLAKERMILEDRIKLQNDRWVSDIHRFQEQIYEMRKNFTIQEMERMLEVAKSEFVVGLKQRDVAVFQRKLENADGELADFREWFDYLSQRCSEPNDVPNAATNEKSETRKKAWEDEVRRLKTENEKLTSEKNSEISALLAEKNFIWNQFNKLEHDMTEQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="75987" PGL_stop="81848"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75987" e_stop="76074"/>
            <exon e_start="76727" e_stop="77202"/>
            <exon e_start="77925" e_stop="78356"/>
            <exon e_start="79191" e_stop="79749"/>
            <exon e_start="80135" e_stop="80603"/>
            <exon e_start="81803" e_stop="81848"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.522" e_score="0.985"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.661" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.891"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="75987" e_stop="76074" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.522">
            <gDNA_intron_boundary i_start="76075" i_stop="76726" i_length="652"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76727" e_stop="77202" e_length="476"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="77203" i_stop="77924" i_length="722"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77925" e_stop="78356" e_length="432"/>
          </exon>
          <intron i_serial="3" don_prob="0.950" acc_prob="0.661">
            <gDNA_intron_boundary i_start="78357" i_stop="79190" i_length="834"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79191" e_stop="79749" e_length="559"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="79750" i_stop="80134" i_length="385"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80135" e_stop="80603" e_length="469"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80604" i_stop="81802" i_length="1199"/>
          </intron>
          <exon e_serial="6" e_score="0.891">
            <gDNA_exon_boundary e_start="81803" e_stop="81848" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75987" stop="76074"/>
              <exon start="76727" stop="77202"/>
              <exon start="77925" stop="78356"/>
              <exon start="79191" stop="79749"/>
              <exon start="80135" stop="80522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76007" stop="76074"/>
              <exon start="76727" stop="77061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76008" stop="76074"/>
              <exon start="76727" stop="77199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76014" stop="76074"/>
              <exon start="76727" stop="77081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76020" stop="76074"/>
              <exon start="76727" stop="77202"/>
              <exon start="77925" stop="78223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76873" stop="77202"/>
              <exon start="77925" stop="78356"/>
              <exon start="79191" stop="79260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77170" stop="77202"/>
              <exon start="77925" stop="78356"/>
              <exon start="79191" stop="79613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77953" stop="78356"/>
              <exon start="79191" stop="79317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78038" stop="78356"/>
              <exon start="79191" stop="79241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78107" stop="78356"/>
              <exon start="79191" stop="79372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78308" stop="78356"/>
              <exon start="79191" stop="79749"/>
              <exon start="80135" stop="80257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79191" stop="79749"/>
              <exon start="80135" stop="80368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79211" stop="79585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79250" stop="79749"/>
              <exon start="80135" stop="80182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79301" stop="79749"/>
              <exon start="80135" stop="80220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79369" stop="79749"/>
              <exon start="80135" stop="80483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79369" stop="79749"/>
              <exon start="80135" stop="80294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79369" stop="79749"/>
              <exon start="80135" stop="80267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79386" stop="79749"/>
              <exon start="80135" stop="80485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79560" stop="79749"/>
              <exon start="80135" stop="80539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605350" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79636" stop="79749"/>
              <exon start="80135" stop="80603"/>
              <exon start="81803" stop="81848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356850" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79676" stop="79749"/>
              <exon start="80135" stop="80564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568061" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79694" stop="79749"/>
              <exon start="80135" stop="80596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418697" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79731" stop="79749"/>
              <exon start="80135" stop="80551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208262" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80159" stop="80573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80237" stop="80572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606309" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATAGTTCATGGTTGGTGTCTTCCTCGGAAACCTTAGATCTCACTGAAGTTCGCCGTAGCCGCCGCCGCCGCCGCCGATACTTTGAG : ATCTTTGGATTCGATTTCTTATTGTCTAGGACTTTTGGAAGTATTGGAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACACGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCTAGATTGCTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGATAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAGCCGCATCCTATAATCGGCGAAGCATGGGAAGCTTTGAGGCGTTCTATTGTTAACTTCCGAGATCAACCTGTGGGAACTATTGCTGCTATAGATAATTCTGCTGAGGAACTTAACTATGATCAG : GTTTTTGTCAGAGATTTTGTCCCCAGCGCTTTGGCATTCTTGATGAATGGTGAACCTGATATAGTAAAGAATTTTCTTTTGAAAACCTTGCGCCTCCAATCTCGGGAGAAGAAGATAGACCAGTTCAAGTTGGGGGATGGAGTTATGCCTGCAAGTTTTAAAGTGTCTCATGATCCTGTTAGGAACTATGAGACTATAACTGCTGATTTCGGTGAAAGTGCTATTGGTAGAGTTGCTCCTGTTGATTCAGGGTTCTGGTGGATTATACTACTTCGTGCATACACAAAGTCTACAGGGGACACTTCTTTGGCTGAGATGCCAGAATGCCAAAGGGGTATAAGGCTGATTCTTGAATTATGTCTCTCTGAAGGTTTTGATACATTCCCAACCCTGCTGTGCGCTGATGGATGCTCTATGATTGATCGCAGAATG : GGTGTCTATGGCTATCCTATTGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGTTGTGATGCAATAATTAAACGACTTCATGCTTTAAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACTGAATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAG : TTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAAATTTTCTTTCGAATGCCATGCTTTTTTTTTCTCTCTTTTTGCAATTCGTAAACACTCTCTTTTAGTTTGTCGCAAAAATGTTGAATTTTTTATGAATTGGCTACGAGATTGTACACTTCACTCCTATTTTTTTCCAGTTAATCTGGTTTTCGTCTAAG : AGTGTTCGTCGAATGCCAATAGATGTGTGTTGTTAGCTGATCTACT</gDNA_template>
            <first_frame> *  *  F  M  V  G  V  F  L  G  N  L  R  S  H  *  S  S  P  *  P  P  P  P  P  P  I  L  *   : D  L  W  I  R  F  L  I  V  *  D  F  W  K  Y  W  K  M  P  S  P  V  D  V  S  Q  N  G  N  A  R  H  A  E  A  A  P  S  L  F  E  I  E  E  D  L  A  R  L  L  E  R  P  R  Q  V  N  I  E  R  K  R  S  F  D  E  R  S  F  S  E  M  S  M  T  H  S  P  P  R  Q  V  Y  K  N  S  E  N  S  S  R  V  F  D  N  M  V  G  V  Y  S  P  G  R  W  S  G  I  H  T  P  R  S  T  F  G  Y  E  P  H  P  I  I  G  E  A  W  E  A  L  R  R  S  I  V  N  F  R  D  Q  P  V  G  T  I  A  A  I  D  N  S  A  E  E  L  N  Y  D  Q  :  V  F  V  R  D  F  V  P  S  A  L  A  F  L  M  N  G  E  P  D  I  V  K  N  F  L  L  K  T  L  R  L  Q  S  R  E  K  K  I  D  Q  F  K  L  G  D  G  V  M  P  A  S  F  K  V  S  H  D  P  V  R  N  Y  E  T  I  T  A  D  F  G  E  S  A  I  G  R  V  A  P  V  D  S  G  F  W  W  I  I  L  L  R  A  Y  T  K  S  T  G  D  T  S  L  A  E  M  P  E  C  Q  R  G  I  R  L  I  L  E  L  C  L  S  E  G  F  D  T  F  P  T  L  L  C  A  D  G  C  S  M  I  D  R  R  M  :  G  V  Y  G  Y  P  I  E  I  Q  A  L  F  F  M  A  L  R  C  A  L  F  L  L  K  H  D  E  E  N  Q  E  C  C  D  A  I  I  K  R  L  H  A  L  S  F  H  M  R  S  Y  Y  W  L  D  I  K  Q  L  N  D  I  Y  R  Y  K  T  E  E  Y  S  H  T  A  V  N  K  F  N  V  M  P  D  S  L  P  E  W  V  F  D  F  M  P  T  R  G  G  Y  F  I  G  N  V  S  P  A  H  M  D  F  R  W  F  C  L  G  N  C  I  S  I  L  S  S  L  A  T  P  E  Q  A  S  A  I  M  D  L  V  E  S  R  W  Q  E  L  V  G  E  M  P  L  K  I  C  Y  P  A  M  E  G  H  E  W  R  I  V  T  G  C  D  P  K  N  T  S  W  S  Y  H  N  G  G  T  W  P   : V  L  L  W  L  L  T  A  A  A  I  K  T  G  R  P  Q  I  A  R  R  A  I  E  L  A  E  S  R  L  L  K  D  S  W  P  E  Y  Y  D  G  K  L  G  R  F  I  G  K  Q  A  R  K  F  Q  T  W  S  I  A  G  Y  L  V  A  R  M  M  L  E  D  P  S  H  L  G  M  I  S  L  E  E  D  K  Q  M  K  P  T  M  K  R  S  A  S  W  T  C  *  Y  P  C  T  Q  I  F  F  R  M  P  C  F  F  F  L  S  F  C  N  S  *  T  L  S  F  S  L  S  Q  K  C  *  I  F  Y  E  L  A  T  R  L  Y  T  S  L  L  F  F  S  S  *  S  G  F  R  L  R :   V  F  V  E  C  Q  *  M  C  V  V  S  *  S  T </first_frame>
            <second_frame>  D  S  S  W  L  V  S  S  S  E  T  L  D  L  T  E  V  R  R  S  R  R  R  R  R  R  Y  F  E  :  I  F  G  F  D  F  L  L  S  R  T  F  G  S  I  G  R  C  L  A  L  W  M  C  L  K  M  G  M  Q  D  T  R  K  L  L  H  P  C  L  K  S  R  K  I  W  L  D  C  W  K  G  Q  D  K  L  I  L  K  G  R  G  R  S  M  K  D  L  S  A  K  C  Q  *  L  I  H  R  H  V  R  Y  T  K  I  R  R  T  L  L  V  F  L  I  I  W  L  E  C  I  H  Q  E  G  G  P  A  Y  T  H  P  D  Q  P  S  D  M  S  R  I  L  *  S  A  K  H  G  K  L  *  G  V  L  L  L  T  S  E  I  N  L  W  E  L  L  L  L  *  I  I  L  L  R  N  L  T  M  I  R :   F  L  S  E  I  L  S  P  A  L  W  H  S  *  *  M  V  N  L  I  *  *  R  I  F  F  *  K  P  C  A  S  N  L  G  R  R  R  *  T  S  S  S  W  G  M  E  L  C  L  Q  V  L  K  C  L  M  I  L  L  G  T  M  R  L  *  L  L  I  S  V  K  V  L  L  V  E  L  L  L  L  I  Q  G  S  G  G  L  Y  Y  F  V  H  T  Q  S  L  Q  G  T  L  L  W  L  R  C  Q  N  A  K  G  V  *  G  *  F  L  N  Y  V  S  L  K  V  L  I  H  S  Q  P  C  C  A  L  M  D  A  L  *  L  I  A  E  W :   V  S  M  A  I  L  L  K  Y  K  H  F  S  L  W  P  *  D  V  P  C  F  S  L  N  T  T  K  K  T  K  S  V  V  M  Q  *  L  N  D  F  M  L  *  A  F  T  *  E  V  T  I  G  S  T  *  N  N  *  M  I  Y  T  A  T  K  Q  K  S  T  L  T  L  Q  *  T  S  L  M  *  C  Q  I  P  F  R  S  G  F  L  I  S  C  Q  L  V  V  V  T  S  S  E  M  L  V  L  L  T  W  T  S  V  G  F  V  W  V  T  V  F  Q  S  C  H  L  W  L  H  L  S  K  L  P  P  *  W  I  S  L  N  Q  D  G  K  S  *  L  E  K  C  R  *  K  S  V  I  L  L  W  K  A  M  N  G  E  L  *  Q  D  A  T  L  K  T  L  V  G  V  T  T  M  V  A  L  G  Q  :  F  F  C  G  S  L  L  Q  Q  L  S  R  L  V  D  P  K  *  H  D  G  P  L  N  *  L  N  R  V  Y  *  K  I  A  G  Q  S  I  T  T  E  S  L  V  D  L  L  E  S  R  R  V  S  S  R  H  G  P  L  L  V  T  W  *  L  E  *  C  W  K  I  H  L  I  W  V  *  Y  H  L  K  K  I  N  R  *  S  L  P  *  K  D  L  L  L  G  L  V  N  I  L  V  H  K  F  S  F  E  C  H  A  F  F  F  S  L  F  A  I  R  K  H  S  L  L  V  C  R  K  N  V  E  F  F  M  N  W  L  R  D  C  T  L  H  S  Y  F  F  P  V  N  L  V  F  V  *   : E  C  S  S  N  A  N  R  C  V  L  L  A  D  L   </second_frame>
            <third_frame>   I  V  H  G  W  C  L  P  R  K  P  *  I  S  L  K  F  A  V  A  A  A  A  A  A  D  T  L  R :   S  L  D  S  I  S  Y  C  L  G  L  L  E  V  L  E  D  A  *  P  C  G  C  V  S  K  W  E  C  K  T  R  G  S  C  S  I  L  V  *  N  R  G  R  F  G  *  I  A  G  K  A  K  T  S  *  Y  *  K  E  E  V  V  R  *  K  I  F  Q  R  N  V  N  D  S  F  T  A  T  S  G  I  Q  K  F  G  E  L  F  S  C  F  *  *  Y  G  W  S  V  F  T  R  K  V  V  R  H  T  H  T  Q  I  N  L  R  I  *  A  A  S  Y  N  R  R  S  M  G  S  F  E  A  F  Y  C  *  L  P  R  S  T  C  G  N  Y  C  C  Y  R  *  F  C  *  G  T  *  L  *  S   : G  F  C  Q  R  F  C  P  Q  R  F  G  I  L  D  E  W  *  T  *  Y  S  K  E  F  S  F  E  N  L  A  P  P  I  S  G  E  E  D  R  P  V  Q  V  G  G  W  S  Y  A  C  K  F  *  S  V  S  *  S  C  *  E  L  *  D  Y  N  C  *  F  R  *  K  C  Y  W  *  S  C  S  C  *  F  R  V  L  V  D  Y  T  T  S  C  I  H  K  V  Y  R  G  H  F  F  G  *  D  A  R  M  P  K  G  Y  K  A  D  S  *  I  M  S  L  *  R  F  *  Y  I  P  N  P  A  V  R  *  W  M  L  Y  D  *  S  Q  N   : G  C  L  W  L  S  Y  *  N  T  S  T  F  L  Y  G  L  K  M  C  L  V  S  P  *  T  R  R  R  K  P  R  V  L  *  C  N  N  *  T  T  S  C  F  K  L  S  H  E  K  L  L  L  A  R  H  K  T  T  E  *  Y  I  P  L  Q  N  R  R  V  L  S  H  C  S  K  Q  V  *  C  D  A  R  F  P  S  G  V  G  F  *  F  H  A  N  S  W  W  L  L  H  R  K  C  *  S  C  S  H  G  L  P  L  V  L  F  G  *  L  Y  F  N  L  V  I  F  G  Y  T  *  A  S  F  R  H  N  G  S  R  *  I  K  M  A  R  A  S  W  R  N  A  A  E  N  L  L  S  C  Y  G  R  P  *  M  E  N  C  N  R  M  R  P  *  K  H  *  L  E  L  P  Q  W  W  H  L  A  S :   S  S  V  A  P  Y  C  S  S  Y  Q  D  W  S  T  P  N  S  T  T  G  H  *  T  S  *  I  A  F  T  K  R  *  L  A  R  V  L  R  R  K  A  W  S  I  Y  W  K  A  G  A  *  V  P  D  M  V  H  C  W  L  L  G  S  *  N  D  A  G  R  S  I  S  F  G  Y  D  I  T  *  R  R  *  T  D  E  A  Y  H  E  K  I  C  F  L  D  L  L  I  S  L  Y  T  N  F  L  S  N  A  M  L  F  F  S  L  F  L  Q  F  V  N  T  L  F  *  F  V  A  K  M  L  N  F  L  *  I  G  Y  E  I  V  H  F  T  P  I  F  F  Q  L  I  W  F  S  S  K  :  S  V  R  R  M  P  I  D  V  C  C  *  L  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76756" stop="77202"/>
                    <exon start="77925" stop="78356"/>
                    <exon start="79191" stop="79749"/>
                    <exon start="80135" stop="80430"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1731</number_coding_nucleotides>
                  <number_encoded_amino_acids>577</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFWKYWKMPSPVDVSQNGNARHAEAAPSLFEIEEDLARLLERPRQVNIERKRSFDERSFSEMSMTHSPPRQVYKNSENSSRVFDNMVGVYSPGRWSGIHTPRSTFGYEPHPIIGEAWEALRRSIVNFRDQPVGTIAAIDNSAEELNYDQVFVRDFVPSALAFLMNGEPDIVKNFLLKTLRLQSREKKIDQFKLGDGVMPASFKVSHDPVRNYETITADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDTSLAEMPECQRGIRLILELCLSEGFDTFPTLLCADGCSMIDRRMGVYGYPIEIQALFFMALRCALFLLKHDEENQECCDAIIKRLHALSFHMRSYYWLDIKQLNDIYRYKTEEYSHTAVNKFNVMPDSLPEWVFDFMPTRGGYFIGNVSPAHMDFRWFCLGNCISILSSLATPEQASAIMDLVESRWQELVGEMPLKICYPAMEGHEWRIVTGCDPKNTSWSYHNGGTWPVLLWLLTAAAIKTGRPQIARRAIELAESRLLKDSWPEYYDGKLGRFIGKQARKFQTWSIAGYLVARMMLEDPSHLGMISLEEDKQMKPTMKRSASWTC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80405" stop="80602"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDLLLGLVNILVHKFSFECHAFFFSLFAIRKHSLLVCRKNVEFFMNWLRDCTLHSYFFPVNLVFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76719" e_stop="77202"/>
            <exon e_start="77925" e_stop="78356"/>
            <exon e_start="79191" e_stop="79749"/>
            <exon e_start="80135" e_stop="80603"/>
            <exon e_start="81803" e_stop="81848"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="0.973"/>
          <exon-intron don_prob="0.950" acc_prob="0.661" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.891"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="76719" e_stop="77202" e_length="484"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="77203" i_stop="77924" i_length="722"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77925" e_stop="78356" e_length="432"/>
          </exon>
          <intron i_serial="2" don_prob="0.950" acc_prob="0.661">
            <gDNA_intron_boundary i_start="78357" i_stop="79190" i_length="834"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="79191" e_stop="79749" e_length="559"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="79750" i_stop="80134" i_length="385"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80135" e_stop="80603" e_length="469"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80604" i_stop="81802" i_length="1199"/>
          </intron>
          <exon e_serial="5" e_score="0.891">
            <gDNA_exon_boundary e_start="81803" e_stop="81848" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76719" stop="77202"/>
              <exon start="77925" stop="77986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76873" stop="77202"/>
              <exon start="77925" stop="78356"/>
              <exon start="79191" stop="79260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77170" stop="77202"/>
              <exon start="77925" stop="78356"/>
              <exon start="79191" stop="79613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77953" stop="78356"/>
              <exon start="79191" stop="79317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78038" stop="78356"/>
              <exon start="79191" stop="79241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78107" stop="78356"/>
              <exon start="79191" stop="79372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78308" stop="78356"/>
              <exon start="79191" stop="79749"/>
              <exon start="80135" stop="80257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79191" stop="79749"/>
              <exon start="80135" stop="80368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79211" stop="79585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79250" stop="79749"/>
              <exon start="80135" stop="80182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79301" stop="79749"/>
              <exon start="80135" stop="80220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79369" stop="79749"/>
              <exon start="80135" stop="80483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79369" stop="79749"/>
              <exon start="80135" stop="80294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79369" stop="79749"/>
              <exon start="80135" stop="80267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79386" stop="79749"/>
              <exon start="80135" stop="80485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79560" stop="79749"/>
              <exon start="80135" stop="80539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605350" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79636" stop="79749"/>
              <exon start="80135" stop="80603"/>
              <exon start="81803" stop="81848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356850" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79676" stop="79749"/>
              <exon start="80135" stop="80564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568061" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79694" stop="79749"/>
              <exon start="80135" stop="80596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418697" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79731" stop="79749"/>
              <exon start="80135" stop="80551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208262" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80159" stop="80573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80237" stop="80572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606309" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATGCAGATCTTTGGATTCGATTTCTTATTGTCTAGGACTTTTGGAAGTATTGGAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACACGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCTAGATTGCTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGATAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAGCCGCATCCTATAATCGGCGAAGCATGGGAAGCTTTGAGGCGTTCTATTGTTAACTTCCGAGATCAACCTGTGGGAACTATTGCTGCTATAGATAATTCTGCTGAGGAACTTAACTATGATCAG : GTTTTTGTCAGAGATTTTGTCCCCAGCGCTTTGGCATTCTTGATGAATGGTGAACCTGATATAGTAAAGAATTTTCTTTTGAAAACCTTGCGCCTCCAATCTCGGGAGAAGAAGATAGACCAGTTCAAGTTGGGGGATGGAGTTATGCCTGCAAGTTTTAAAGTGTCTCATGATCCTGTTAGGAACTATGAGACTATAACTGCTGATTTCGGTGAAAGTGCTATTGGTAGAGTTGCTCCTGTTGATTCAGGGTTCTGGTGGATTATACTACTTCGTGCATACACAAAGTCTACAGGGGACACTTCTTTGGCTGAGATGCCAGAATGCCAAAGGGGTATAAGGCTGATTCTTGAATTATGTCTCTCTGAAGGTTTTGATACATTCCCAACCCTGCTGTGCGCTGATGGATGCTCTATGATTGATCGCAGAATG : GGTGTCTATGGCTATCCTATTGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGTTGTGATGCAATAATTAAACGACTTCATGCTTTAAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACTGAATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAG : TTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAAATTTTCTTTCGAATGCCATGCTTTTTTTTTCTCTCTTTTTGCAATTCGTAAACACTCTCTTTTAGTTTGTCGCAAAAATGTTGAATTTTTTATGAATTGGCTACGAGATTGTACACTTCACTCCTATTTTTTTCCAGTTAATCTGGTTTTCGTCTAAG : AGTGTTCGTCGAATGCCAATAGATGTGTGTTGTTAGCTGATCTACT</gDNA_template>
            <first_frame> I  C  R  S  L  D  S  I  S  Y  C  L  G  L  L  E  V  L  E  D  A  *  P  C  G  C  V  S  K  W  E  C  K  T  R  G  S  C  S  I  L  V  *  N  R  G  R  F  G  *  I  A  G  K  A  K  T  S  *  Y  *  K  E  E  V  V  R  *  K  I  F  Q  R  N  V  N  D  S  F  T  A  T  S  G  I  Q  K  F  G  E  L  F  S  C  F  *  *  Y  G  W  S  V  F  T  R  K  V  V  R  H  T  H  T  Q  I  N  L  R  I  *  A  A  S  Y  N  R  R  S  M  G  S  F  E  A  F  Y  C  *  L  P  R  S  T  C  G  N  Y  C  C  Y  R  *  F  C  *  G  T  *  L  *  S   : G  F  C  Q  R  F  C  P  Q  R  F  G  I  L  D  E  W  *  T  *  Y  S  K  E  F  S  F  E  N  L  A  P  P  I  S  G  E  E  D  R  P  V  Q  V  G  G  W  S  Y  A  C  K  F  *  S  V  S  *  S  C  *  E  L  *  D  Y  N  C  *  F  R  *  K  C  Y  W  *  S  C  S  C  *  F  R  V  L  V  D  Y  T  T  S  C  I  H  K  V  Y  R  G  H  F  F  G  *  D  A  R  M  P  K  G  Y  K  A  D  S  *  I  M  S  L  *  R  F  *  Y  I  P  N  P  A  V  R  *  W  M  L  Y  D  *  S  Q  N   : G  C  L  W  L  S  Y  *  N  T  S  T  F  L  Y  G  L  K  M  C  L  V  S  P  *  T  R  R  R  K  P  R  V  L  *  C  N  N  *  T  T  S  C  F  K  L  S  H  E  K  L  L  L  A  R  H  K  T  T  E  *  Y  I  P  L  Q  N  R  R  V  L  S  H  C  S  K  Q  V  *  C  D  A  R  F  P  S  G  V  G  F  *  F  H  A  N  S  W  W  L  L  H  R  K  C  *  S  C  S  H  G  L  P  L  V  L  F  G  *  L  Y  F  N  L  V  I  F  G  Y  T  *  A  S  F  R  H  N  G  S  R  *  I  K  M  A  R  A  S  W  R  N  A  A  E  N  L  L  S  C  Y  G  R  P  *  M  E  N  C  N  R  M  R  P  *  K  H  *  L  E  L  P  Q  W  W  H  L  A  S :   S  S  V  A  P  Y  C  S  S  Y  Q  D  W  S  T  P  N  S  T  T  G  H  *  T  S  *  I  A  F  T  K  R  *  L  A  R  V  L  R  R  K  A  W  S  I  Y  W  K  A  G  A  *  V  P  D  M  V  H  C  W  L  L  G  S  *  N  D  A  G  R  S  I  S  F  G  Y  D  I  T  *  R  R  *  T  D  E  A  Y  H  E  K  I  C  F  L  D  L  L  I  S  L  Y  T  N  F  L  S  N  A  M  L  F  F  S  L  F  L  Q  F  V  N  T  L  F  *  F  V  A  K  M  L  N  F  L  *  I  G  Y  E  I  V  H  F  T  P  I  F  F  Q  L  I  W  F  S  S  K  :  S  V  R  R  M  P  I  D  V  C  C  *  L  I  Y  </first_frame>
            <second_frame>  Y  A  D  L  W  I  R  F  L  I  V  *  D  F  W  K  Y  W  K  M  P  S  P  V  D  V  S  Q  N  G  N  A  R  H  A  E  A  A  P  S  L  F  E  I  E  E  D  L  A  R  L  L  E  R  P  R  Q  V  N  I  E  R  K  R  S  F  D  E  R  S  F  S  E  M  S  M  T  H  S  P  P  R  Q  V  Y  K  N  S  E  N  S  S  R  V  F  D  N  M  V  G  V  Y  S  P  G  R  W  S  G  I  H  T  P  R  S  T  F  G  Y  E  P  H  P  I  I  G  E  A  W  E  A  L  R  R  S  I  V  N  F  R  D  Q  P  V  G  T  I  A  A  I  D  N  S  A  E  E  L  N  Y  D  Q  :  V  F  V  R  D  F  V  P  S  A  L  A  F  L  M  N  G  E  P  D  I  V  K  N  F  L  L  K  T  L  R  L  Q  S  R  E  K  K  I  D  Q  F  K  L  G  D  G  V  M  P  A  S  F  K  V  S  H  D  P  V  R  N  Y  E  T  I  T  A  D  F  G  E  S  A  I  G  R  V  A  P  V  D  S  G  F  W  W  I  I  L  L  R  A  Y  T  K  S  T  G  D  T  S  L  A  E  M  P  E  C  Q  R  G  I  R  L  I  L  E  L  C  L  S  E  G  F  D  T  F  P  T  L  L  C  A  D  G  C  S  M  I  D  R  R  M  :  G  V  Y  G  Y  P  I  E  I  Q  A  L  F  F  M  A  L  R  C  A  L  F  L  L  K  H  D  E  E  N  Q  E  C  C  D  A  I  I  K  R  L  H  A  L  S  F  H  M  R  S  Y  Y  W  L  D  I  K  Q  L  N  D  I  Y  R  Y  K  T  E  E  Y  S  H  T  A  V  N  K  F  N  V  M  P  D  S  L  P  E  W  V  F  D  F  M  P  T  R  G  G  Y  F  I  G  N  V  S  P  A  H  M  D  F  R  W  F  C  L  G  N  C  I  S  I  L  S  S  L  A  T  P  E  Q  A  S  A  I  M  D  L  V  E  S  R  W  Q  E  L  V  G  E  M  P  L  K  I  C  Y  P  A  M  E  G  H  E  W  R  I  V  T  G  C  D  P  K  N  T  S  W  S  Y  H  N  G  G  T  W  P   : V  L  L  W  L  L  T  A  A  A  I  K  T  G  R  P  Q  I  A  R  R  A  I  E  L  A  E  S  R  L  L  K  D  S  W  P  E  Y  Y  D  G  K  L  G  R  F  I  G  K  Q  A  R  K  F  Q  T  W  S  I  A  G  Y  L  V  A  R  M  M  L  E  D  P  S  H  L  G  M  I  S  L  E  E  D  K  Q  M  K  P  T  M  K  R  S  A  S  W  T  C  *  Y  P  C  T  Q  I  F  F  R  M  P  C  F  F  F  L  S  F  C  N  S  *  T  L  S  F  S  L  S  Q  K  C  *  I  F  Y  E  L  A  T  R  L  Y  T  S  L  L  F  F  S  S  *  S  G  F  R  L  R :   V  F  V  E  C  Q  *  M  C  V  V  S  *  S  T </second_frame>
            <third_frame>   M  Q  I  F  G  F  D  F  L  L  S  R  T  F  G  S  I  G  R  C  L  A  L  W  M  C  L  K  M  G  M  Q  D  T  R  K  L  L  H  P  C  L  K  S  R  K  I  W  L  D  C  W  K  G  Q  D  K  L  I  L  K  G  R  G  R  S  M  K  D  L  S  A  K  C  Q  *  L  I  H  R  H  V  R  Y  T  K  I  R  R  T  L  L  V  F  L  I  I  W  L  E  C  I  H  Q  E  G  G  P  A  Y  T  H  P  D  Q  P  S  D  M  S  R  I  L  *  S  A  K  H  G  K  L  *  G  V  L  L  L  T  S  E  I  N  L  W  E  L  L  L  L  *  I  I  L  L  R  N  L  T  M  I  R :   F  L  S  E  I  L  S  P  A  L  W  H  S  *  *  M  V  N  L  I  *  *  R  I  F  F  *  K  P  C  A  S  N  L  G  R  R  R  *  T  S  S  S  W  G  M  E  L  C  L  Q  V  L  K  C  L  M  I  L  L  G  T  M  R  L  *  L  L  I  S  V  K  V  L  L  V  E  L  L  L  L  I  Q  G  S  G  G  L  Y  Y  F  V  H  T  Q  S  L  Q  G  T  L  L  W  L  R  C  Q  N  A  K  G  V  *  G  *  F  L  N  Y  V  S  L  K  V  L  I  H  S  Q  P  C  C  A  L  M  D  A  L  *  L  I  A  E  W :   V  S  M  A  I  L  L  K  Y  K  H  F  S  L  W  P  *  D  V  P  C  F  S  L  N  T  T  K  K  T  K  S  V  V  M  Q  *  L  N  D  F  M  L  *  A  F  T  *  E  V  T  I  G  S  T  *  N  N  *  M  I  Y  T  A  T  K  Q  K  S  T  L  T  L  Q  *  T  S  L  M  *  C  Q  I  P  F  R  S  G  F  L  I  S  C  Q  L  V  V  V  T  S  S  E  M  L  V  L  L  T  W  T  S  V  G  F  V  W  V  T  V  F  Q  S  C  H  L  W  L  H  L  S  K  L  P  P  *  W  I  S  L  N  Q  D  G  K  S  *  L  E  K  C  R  *  K  S  V  I  L  L  W  K  A  M  N  G  E  L  *  Q  D  A  T  L  K  T  L  V  G  V  T  T  M  V  A  L  G  Q  :  F  F  C  G  S  L  L  Q  Q  L  S  R  L  V  D  P  K  *  H  D  G  P  L  N  *  L  N  R  V  Y  *  K  I  A  G  Q  S  I  T  T  E  S  L  V  D  L  L  E  S  R  R  V  S  S  R  H  G  P  L  L  V  T  W  *  L  E  *  C  W  K  I  H  L  I  W  V  *  Y  H  L  K  K  I  N  R  *  S  L  P  *  K  D  L  L  L  G  L  V  N  I  L  V  H  K  F  S  F  E  C  H  A  F  F  F  S  L  F  A  I  R  K  H  S  L  L  V  C  R  K  N  V  E  F  F  M  N  W  L  R  D  C  T  L  H  S  Y  F  F  P  V  N  L  V  F  V  *   : E  C  S  S  N  A  N  R  C  V  L  L  A  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76756" stop="77202"/>
                    <exon start="77925" stop="78356"/>
                    <exon start="79191" stop="79749"/>
                    <exon start="80135" stop="80430"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1731</number_coding_nucleotides>
                  <number_encoded_amino_acids>577</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFWKYWKMPSPVDVSQNGNARHAEAAPSLFEIEEDLARLLERPRQVNIERKRSFDERSFSEMSMTHSPPRQVYKNSENSSRVFDNMVGVYSPGRWSGIHTPRSTFGYEPHPIIGEAWEALRRSIVNFRDQPVGTIAAIDNSAEELNYDQVFVRDFVPSALAFLMNGEPDIVKNFLLKTLRLQSREKKIDQFKLGDGVMPASFKVSHDPVRNYETITADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDTSLAEMPECQRGIRLILELCLSEGFDTFPTLLCADGCSMIDRRMGVYGYPIEIQALFFMALRCALFLLKHDEENQECCDAIIKRLHALSFHMRSYYWLDIKQLNDIYRYKTEEYSHTAVNKFNVMPDSLPEWVFDFMPTRGGYFIGNVSPAHMDFRWFCLGNCISILSSLATPEQASAIMDLVESRWQELVGEMPLKICYPAMEGHEWRIVTGCDPKNTSWSYHNGGTWPVLLWLLTAAAIKTGRPQIARRAIELAESRLLKDSWPEYYDGKLGRFIGKQARKFQTWSIAGYLVARMMLEDPSHLGMISLEEDKQMKPTMKRSASWTC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80405" stop="80602"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDLLLGLVNILVHKFSFECHAFFFSLFAIRKHSLLVCRKNVEFFMNWLRDCTLHSYFFPVNLVFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="76013" e_stop="76095"/>
            <exon e_start="76727" e_stop="77202"/>
            <exon e_start="77925" e_stop="78356"/>
            <exon e_start="79191" e_stop="79749"/>
            <exon e_start="80135" e_stop="80603"/>
            <exon e_start="81803" e_stop="81848"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.522" e_score="0.928"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.661" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.891"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="76013" e_stop="76095" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.522">
            <gDNA_intron_boundary i_start="76096" i_stop="76726" i_length="631"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76727" e_stop="77202" e_length="476"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="77203" i_stop="77924" i_length="722"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77925" e_stop="78356" e_length="432"/>
          </exon>
          <intron i_serial="3" don_prob="0.950" acc_prob="0.661">
            <gDNA_intron_boundary i_start="78357" i_stop="79190" i_length="834"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="79191" e_stop="79749" e_length="559"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="79750" i_stop="80134" i_length="385"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80135" e_stop="80603" e_length="469"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80604" i_stop="81802" i_length="1199"/>
          </intron>
          <exon e_serial="6" e_score="0.891">
            <gDNA_exon_boundary e_start="81803" e_stop="81848" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76013" stop="76095"/>
              <exon start="76727" stop="77061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76873" stop="77202"/>
              <exon start="77925" stop="78356"/>
              <exon start="79191" stop="79260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77170" stop="77202"/>
              <exon start="77925" stop="78356"/>
              <exon start="79191" stop="79613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77953" stop="78356"/>
              <exon start="79191" stop="79317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78038" stop="78356"/>
              <exon start="79191" stop="79241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78107" stop="78356"/>
              <exon start="79191" stop="79372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78308" stop="78356"/>
              <exon start="79191" stop="79749"/>
              <exon start="80135" stop="80257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79191" stop="79749"/>
              <exon start="80135" stop="80368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79211" stop="79585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79250" stop="79749"/>
              <exon start="80135" stop="80182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79301" stop="79749"/>
              <exon start="80135" stop="80220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79369" stop="79749"/>
              <exon start="80135" stop="80483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79369" stop="79749"/>
              <exon start="80135" stop="80294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79369" stop="79749"/>
              <exon start="80135" stop="80267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79386" stop="79749"/>
              <exon start="80135" stop="80485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79560" stop="79749"/>
              <exon start="80135" stop="80539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605350" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79636" stop="79749"/>
              <exon start="80135" stop="80603"/>
              <exon start="81803" stop="81848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356850" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79676" stop="79749"/>
              <exon start="80135" stop="80564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568061" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79694" stop="79749"/>
              <exon start="80135" stop="80596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418697" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79731" stop="79749"/>
              <exon start="80135" stop="80551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208262" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80159" stop="80573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80237" stop="80572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606309" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAAACCTTAGATCTCACTGAAGTTCGCCGTAGCCGCCGCCGCCGCCGCCGATACTTTGAGGTTGTTATTACCAGCTCCTAG : ATCTTTGGATTCGATTTCTTATTGTCTAGGACTTTTGGAAGTATTGGAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACACGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCTAGATTGCTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGATAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAGCCGCATCCTATAATCGGCGAAGCATGGGAAGCTTTGAGGCGTTCTATTGTTAACTTCCGAGATCAACCTGTGGGAACTATTGCTGCTATAGATAATTCTGCTGAGGAACTTAACTATGATCAG : GTTTTTGTCAGAGATTTTGTCCCCAGCGCTTTGGCATTCTTGATGAATGGTGAACCTGATATAGTAAAGAATTTTCTTTTGAAAACCTTGCGCCTCCAATCTCGGGAGAAGAAGATAGACCAGTTCAAGTTGGGGGATGGAGTTATGCCTGCAAGTTTTAAAGTGTCTCATGATCCTGTTAGGAACTATGAGACTATAACTGCTGATTTCGGTGAAAGTGCTATTGGTAGAGTTGCTCCTGTTGATTCAGGGTTCTGGTGGATTATACTACTTCGTGCATACACAAAGTCTACAGGGGACACTTCTTTGGCTGAGATGCCAGAATGCCAAAGGGGTATAAGGCTGATTCTTGAATTATGTCTCTCTGAAGGTTTTGATACATTCCCAACCCTGCTGTGCGCTGATGGATGCTCTATGATTGATCGCAGAATG : GGTGTCTATGGCTATCCTATTGAAATACAAGCACTTTTCTTTATGGCCTTAAGATGTGCCTTGTTTCTCCTTAAACACGACGAAGAAAACCAAGAGTGTTGTGATGCAATAATTAAACGACTTCATGCTTTAAGCTTTCACATGAGAAGTTACTATTGGCTCGACATAAAACAACTGAATGATATATACCGCTACAAAACAGAAGAGTACTCTCACACTGCAGTAAACAAGTTTAATGTGATGCCAGATTCCCTTCCGGAGTGGGTTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATCGGAAATGTTAGTCCTGCTCACATGGACTTCCGTTGGTTTTGTTTGGGTAACTGTATTTCAATCTTGTCATCTTTGGCTACACCTGAGCAAGCTTCCGCCATAATGGATCTCGTTGAATCAAGATGGCAAGAGCTAGTTGGAGAAATGCCGCTGAAAATCTGTTATCCTGCTATGGAAGGCCATGAATGGAGAATTGTAACAGGATGCGACCCTAAAAACACTAGTTGGAGTTACCACAATGGTGGCACTTGGCCAG : TTCTTCTGTGGCTCCTTACTGCAGCAGCTATCAAGACTGGTCGACCCCAAATAGCACGACGGGCCATTGAACTAGCTGAATCGCGTTTACTAAAAGATAGCTGGCCAGAGTATTACGACGGAAAGCTTGGTCGATTTATTGGAAAGCAGGCGCGTAAGTTCCAGACATGGTCCATTGCTGGTTACTTGGTAGCTAGAATGATGCTGGAAGATCCATCTCATTTGGGTATGATATCACTTGAAGAAGATAAACAGATGAAGCCTACCATGAAAAGATCTGCTTCTTGGACTTGTTAATATCCTTGTACACAAATTTTCTTTCGAATGCCATGCTTTTTTTTTCTCTCTTTTTGCAATTCGTAAACACTCTCTTTTAGTTTGTCGCAAAAATGTTGAATTTTTTATGAATTGGCTACGAGATTGTACACTTCACTCCTATTTTTTTCCAGTTAATCTGGTTTTCGTCTAAG : AGTGTTCGTCGAATGCCAATAGATGTGTGTTGTTAGCTGATCTACT</gDNA_template>
            <first_frame> R  K  P  *  I  S  L  K  F  A  V  A  A  A  A  A  A  D  T  L  R  L  L  L  P  A  P  R :   S  L  D  S  I  S  Y  C  L  G  L  L  E  V  L  E  D  A  *  P  C  G  C  V  S  K  W  E  C  K  T  R  G  S  C  S  I  L  V  *  N  R  G  R  F  G  *  I  A  G  K  A  K  T  S  *  Y  *  K  E  E  V  V  R  *  K  I  F  Q  R  N  V  N  D  S  F  T  A  T  S  G  I  Q  K  F  G  E  L  F  S  C  F  *  *  Y  G  W  S  V  F  T  R  K  V  V  R  H  T  H  T  Q  I  N  L  R  I  *  A  A  S  Y  N  R  R  S  M  G  S  F  E  A  F  Y  C  *  L  P  R  S  T  C  G  N  Y  C  C  Y  R  *  F  C  *  G  T  *  L  *  S   : G  F  C  Q  R  F  C  P  Q  R  F  G  I  L  D  E  W  *  T  *  Y  S  K  E  F  S  F  E  N  L  A  P  P  I  S  G  E  E  D  R  P  V  Q  V  G  G  W  S  Y  A  C  K  F  *  S  V  S  *  S  C  *  E  L  *  D  Y  N  C  *  F  R  *  K  C  Y  W  *  S  C  S  C  *  F  R  V  L  V  D  Y  T  T  S  C  I  H  K  V  Y  R  G  H  F  F  G  *  D  A  R  M  P  K  G  Y  K  A  D  S  *  I  M  S  L  *  R  F  *  Y  I  P  N  P  A  V  R  *  W  M  L  Y  D  *  S  Q  N   : G  C  L  W  L  S  Y  *  N  T  S  T  F  L  Y  G  L  K  M  C  L  V  S  P  *  T  R  R  R  K  P  R  V  L  *  C  N  N  *  T  T  S  C  F  K  L  S  H  E  K  L  L  L  A  R  H  K  T  T  E  *  Y  I  P  L  Q  N  R  R  V  L  S  H  C  S  K  Q  V  *  C  D  A  R  F  P  S  G  V  G  F  *  F  H  A  N  S  W  W  L  L  H  R  K  C  *  S  C  S  H  G  L  P  L  V  L  F  G  *  L  Y  F  N  L  V  I  F  G  Y  T  *  A  S  F  R  H  N  G  S  R  *  I  K  M  A  R  A  S  W  R  N  A  A  E  N  L  L  S  C  Y  G  R  P  *  M  E  N  C  N  R  M  R  P  *  K  H  *  L  E  L  P  Q  W  W  H  L  A  S :   S  S  V  A  P  Y  C  S  S  Y  Q  D  W  S  T  P  N  S  T  T  G  H  *  T  S  *  I  A  F  T  K  R  *  L  A  R  V  L  R  R  K  A  W  S  I  Y  W  K  A  G  A  *  V  P  D  M  V  H  C  W  L  L  G  S  *  N  D  A  G  R  S  I  S  F  G  Y  D  I  T  *  R  R  *  T  D  E  A  Y  H  E  K  I  C  F  L  D  L  L  I  S  L  Y  T  N  F  L  S  N  A  M  L  F  F  S  L  F  L  Q  F  V  N  T  L  F  *  F  V  A  K  M  L  N  F  L  *  I  G  Y  E  I  V  H  F  T  P  I  F  F  Q  L  I  W  F  S  S  K  :  S  V  R  R  M  P  I  D  V  C  C  *  L  I  Y  </first_frame>
            <second_frame>  G  N  L  R  S  H  *  S  S  P  *  P  P  P  P  P  P  I  L  *  G  C  Y  Y  Q  L  L   : D  L  W  I  R  F  L  I  V  *  D  F  W  K  Y  W  K  M  P  S  P  V  D  V  S  Q  N  G  N  A  R  H  A  E  A  A  P  S  L  F  E  I  E  E  D  L  A  R  L  L  E  R  P  R  Q  V  N  I  E  R  K  R  S  F  D  E  R  S  F  S  E  M  S  M  T  H  S  P  P  R  Q  V  Y  K  N  S  E  N  S  S  R  V  F  D  N  M  V  G  V  Y  S  P  G  R  W  S  G  I  H  T  P  R  S  T  F  G  Y  E  P  H  P  I  I  G  E  A  W  E  A  L  R  R  S  I  V  N  F  R  D  Q  P  V  G  T  I  A  A  I  D  N  S  A  E  E  L  N  Y  D  Q  :  V  F  V  R  D  F  V  P  S  A  L  A  F  L  M  N  G  E  P  D  I  V  K  N  F  L  L  K  T  L  R  L  Q  S  R  E  K  K  I  D  Q  F  K  L  G  D  G  V  M  P  A  S  F  K  V  S  H  D  P  V  R  N  Y  E  T  I  T  A  D  F  G  E  S  A  I  G  R  V  A  P  V  D  S  G  F  W  W  I  I  L  L  R  A  Y  T  K  S  T  G  D  T  S  L  A  E  M  P  E  C  Q  R  G  I  R  L  I  L  E  L  C  L  S  E  G  F  D  T  F  P  T  L  L  C  A  D  G  C  S  M  I  D  R  R  M  :  G  V  Y  G  Y  P  I  E  I  Q  A  L  F  F  M  A  L  R  C  A  L  F  L  L  K  H  D  E  E  N  Q  E  C  C  D  A  I  I  K  R  L  H  A  L  S  F  H  M  R  S  Y  Y  W  L  D  I  K  Q  L  N  D  I  Y  R  Y  K  T  E  E  Y  S  H  T  A  V  N  K  F  N  V  M  P  D  S  L  P  E  W  V  F  D  F  M  P  T  R  G  G  Y  F  I  G  N  V  S  P  A  H  M  D  F  R  W  F  C  L  G  N  C  I  S  I  L  S  S  L  A  T  P  E  Q  A  S  A  I  M  D  L  V  E  S  R  W  Q  E  L  V  G  E  M  P  L  K  I  C  Y  P  A  M  E  G  H  E  W  R  I  V  T  G  C  D  P  K  N  T  S  W  S  Y  H  N  G  G  T  W  P   : V  L  L  W  L  L  T  A  A  A  I  K  T  G  R  P  Q  I  A  R  R  A  I  E  L  A  E  S  R  L  L  K  D  S  W  P  E  Y  Y  D  G  K  L  G  R  F  I  G  K  Q  A  R  K  F  Q  T  W  S  I  A  G  Y  L  V  A  R  M  M  L  E  D  P  S  H  L  G  M  I  S  L  E  E  D  K  Q  M  K  P  T  M  K  R  S  A  S  W  T  C  *  Y  P  C  T  Q  I  F  F  R  M  P  C  F  F  F  L  S  F  C  N  S  *  T  L  S  F  S  L  S  Q  K  C  *  I  F  Y  E  L  A  T  R  L  Y  T  S  L  L  F  F  S  S  *  S  G  F  R  L  R :   V  F  V  E  C  Q  *  M  C  V  V  S  *  S  T </second_frame>
            <third_frame>   E  T  L  D  L  T  E  V  R  R  S  R  R  R  R  R  R  Y  F  E  V  V  I  T  S  S  *  :  I  F  G  F  D  F  L  L  S  R  T  F  G  S  I  G  R  C  L  A  L  W  M  C  L  K  M  G  M  Q  D  T  R  K  L  L  H  P  C  L  K  S  R  K  I  W  L  D  C  W  K  G  Q  D  K  L  I  L  K  G  R  G  R  S  M  K  D  L  S  A  K  C  Q  *  L  I  H  R  H  V  R  Y  T  K  I  R  R  T  L  L  V  F  L  I  I  W  L  E  C  I  H  Q  E  G  G  P  A  Y  T  H  P  D  Q  P  S  D  M  S  R  I  L  *  S  A  K  H  G  K  L  *  G  V  L  L  L  T  S  E  I  N  L  W  E  L  L  L  L  *  I  I  L  L  R  N  L  T  M  I  R :   F  L  S  E  I  L  S  P  A  L  W  H  S  *  *  M  V  N  L  I  *  *  R  I  F  F  *  K  P  C  A  S  N  L  G  R  R  R  *  T  S  S  S  W  G  M  E  L  C  L  Q  V  L  K  C  L  M  I  L  L  G  T  M  R  L  *  L  L  I  S  V  K  V  L  L  V  E  L  L  L  L  I  Q  G  S  G  G  L  Y  Y  F  V  H  T  Q  S  L  Q  G  T  L  L  W  L  R  C  Q  N  A  K  G  V  *  G  *  F  L  N  Y  V  S  L  K  V  L  I  H  S  Q  P  C  C  A  L  M  D  A  L  *  L  I  A  E  W :   V  S  M  A  I  L  L  K  Y  K  H  F  S  L  W  P  *  D  V  P  C  F  S  L  N  T  T  K  K  T  K  S  V  V  M  Q  *  L  N  D  F  M  L  *  A  F  T  *  E  V  T  I  G  S  T  *  N  N  *  M  I  Y  T  A  T  K  Q  K  S  T  L  T  L  Q  *  T  S  L  M  *  C  Q  I  P  F  R  S  G  F  L  I  S  C  Q  L  V  V  V  T  S  S  E  M  L  V  L  L  T  W  T  S  V  G  F  V  W  V  T  V  F  Q  S  C  H  L  W  L  H  L  S  K  L  P  P  *  W  I  S  L  N  Q  D  G  K  S  *  L  E  K  C  R  *  K  S  V  I  L  L  W  K  A  M  N  G  E  L  *  Q  D  A  T  L  K  T  L  V  G  V  T  T  M  V  A  L  G  Q  :  F  F  C  G  S  L  L  Q  Q  L  S  R  L  V  D  P  K  *  H  D  G  P  L  N  *  L  N  R  V  Y  *  K  I  A  G  Q  S  I  T  T  E  S  L  V  D  L  L  E  S  R  R  V  S  S  R  H  G  P  L  L  V  T  W  *  L  E  *  C  W  K  I  H  L  I  W  V  *  Y  H  L  K  K  I  N  R  *  S  L  P  *  K  D  L  L  L  G  L  V  N  I  L  V  H  K  F  S  F  E  C  H  A  F  F  F  S  L  F  A  I  R  K  H  S  L  L  V  C  R  K  N  V  E  F  F  M  N  W  L  R  D  C  T  L  H  S  Y  F  F  P  V  N  L  V  F  V  *   : E  C  S  S  N  A  N  R  C  V  L  L  A  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76756" stop="77202"/>
                    <exon start="77925" stop="78356"/>
                    <exon start="79191" stop="79749"/>
                    <exon start="80135" stop="80430"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1731</number_coding_nucleotides>
                  <number_encoded_amino_acids>577</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFWKYWKMPSPVDVSQNGNARHAEAAPSLFEIEEDLARLLERPRQVNIERKRSFDERSFSEMSMTHSPPRQVYKNSENSSRVFDNMVGVYSPGRWSGIHTPRSTFGYEPHPIIGEAWEALRRSIVNFRDQPVGTIAAIDNSAEELNYDQVFVRDFVPSALAFLMNGEPDIVKNFLLKTLRLQSREKKIDQFKLGDGVMPASFKVSHDPVRNYETITADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDTSLAEMPECQRGIRLILELCLSEGFDTFPTLLCADGCSMIDRRMGVYGYPIEIQALFFMALRCALFLLKHDEENQECCDAIIKRLHALSFHMRSYYWLDIKQLNDIYRYKTEEYSHTAVNKFNVMPDSLPEWVFDFMPTRGGYFIGNVSPAHMDFRWFCLGNCISILSSLATPEQASAIMDLVESRWQELVGEMPLKICYPAMEGHEWRIVTGCDPKNTSWSYHNGGTWPVLLWLLTAAAIKTGRPQIARRAIELAESRLLKDSWPEYYDGKLGRFIGKQARKFQTWSIAGYLVARMMLEDPSHLGMISLEEDKQMKPTMKRSASWTC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80405" stop="80602"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDLLLGLVNILVHKFSFECHAFFFSLFAIRKHSLLVCRKNVEFFMNWLRDCTLHSYFFPVNLVFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="76007" e_stop="76074"/>
            <exon e_start="76727" e_stop="77202"/>
            <exon e_start="77286" e_stop="77291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.522" e_score="0.985"/>
          <exon-intron don_prob="1.000" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="76007" e_stop="76074" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.522">
            <gDNA_intron_boundary i_start="76075" i_stop="76726" i_length="652"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76727" e_stop="77202" e_length="476"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="77203" i_stop="77285" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.500">
            <gDNA_exon_boundary e_start="77286" e_stop="77291" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76007" stop="76074"/>
              <exon start="76727" stop="77061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76008" stop="76074"/>
              <exon start="76727" stop="77199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76014" stop="76074"/>
              <exon start="76727" stop="77081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76015" stop="76074"/>
              <exon start="76727" stop="77202"/>
              <exon start="77286" stop="77291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312238" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCCTCGGAAACCTTAGATCTCACTGAAGTTCGCCGTAGCCGCCGCCGCCGCCGCCGATACTTTGAG : ATCTTTGGATTCGATTTCTTATTGTCTAGGACTTTTGGAAGTATTGGAAGATGCCTAGCCCTGTGGATGTGTCTCAAAATGGGAATGCAAGACACGCGGAAGCTGCTCCATCCTTGTTTGAAATCGAGGAAGATTTGGCTAGATTGCTGGAAAGGCCAAGACAAGTTAATATTGAAAGGAAGAGGTCGTTCGATGAAAGATCTTTCAGCGAAATGTCAATGACTCATTCACCGCCACGTCAGGTATACAAAAATTCGGAGAACTCTTCTCGTGTTTTTGATAATATGGTTGGAGTGTATTCACCAGGAAGGTGGTCCGGCATACACACACCCAGATCAACCTTCGGATATGAGCCGCATCCTATAATCGGCGAAGCATGGGAAGCTTTGAGGCGTTCTATTGTTAACTTCCGAGATCAACCTGTGGGAACTATTGCTGCTATAGATAATTCTGCTGAGGAACTTAACTATGATCAG : GTCGAT</gDNA_template>
            <first_frame> L  P  R  K  P  *  I  S  L  K  F  A  V  A  A  A  A  A  A  D  T  L  R :   S  L  D  S  I  S  Y  C  L  G  L  L  E  V  L  E  D  A  *  P  C  G  C  V  S  K  W  E  C  K  T  R  G  S  C  S  I  L  V  *  N  R  G  R  F  G  *  I  A  G  K  A  K  T  S  *  Y  *  K  E  E  V  V  R  *  K  I  F  Q  R  N  V  N  D  S  F  T  A  T  S  G  I  Q  K  F  G  E  L  F  S  C  F  *  *  Y  G  W  S  V  F  T  R  K  V  V  R  H  T  H  T  Q  I  N  L  R  I  *  A  A  S  Y  N  R  R  S  M  G  S  F  E  A  F  Y  C  *  L  P  R  S  T  C  G  N  Y  C  C  Y  R  *  F  C  *  G  T  *  L  *  S   : G  R  </first_frame>
            <second_frame>  F  L  G  N  L  R  S  H  *  S  S  P  *  P  P  P  P  P  P  I  L  *   : D  L  W  I  R  F  L  I  V  *  D  F  W  K  Y  W  K  M  P  S  P  V  D  V  S  Q  N  G  N  A  R  H  A  E  A  A  P  S  L  F  E  I  E  E  D  L  A  R  L  L  E  R  P  R  Q  V  N  I  E  R  K  R  S  F  D  E  R  S  F  S  E  M  S  M  T  H  S  P  P  R  Q  V  Y  K  N  S  E  N  S  S  R  V  F  D  N  M  V  G  V  Y  S  P  G  R  W  S  G  I  H  T  P  R  S  T  F  G  Y  E  P  H  P  I  I  G  E  A  W  E  A  L  R  R  S  I  V  N  F  R  D  Q  P  V  G  T  I  A  A  I  D  N  S  A  E  E  L  N  Y  D  Q  :  V  D </second_frame>
            <third_frame>   S  S  E  T  L  D  L  T  E  V  R  R  S  R  R  R  R  R  R  Y  F  E  :  I  F  G  F  D  F  L  L  S  R  T  F  G  S  I  G  R  C  L  A  L  W  M  C  L  K  M  G  M  Q  D  T  R  K  L  L  H  P  C  L  K  S  R  K  I  W  L  D  C  W  K  G  Q  D  K  L  I  L  K  G  R  G  R  S  M  K  D  L  S  A  K  C  Q  *  L  I  H  R  H  V  R  Y  T  K  I  R  R  T  L  L  V  F  L  I  I  W  L  E  C  I  H  Q  E  G  G  P  A  Y  T  H  P  D  Q  P  S  D  M  S  R  I  L  *  S  A  K  H  G  K  L  *  G  V  L  L  L  T  S  E  I  N  L  W  E  L  L  L  L  *  I  I  L  L  R  N  L  T  M  I  R :   S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76756" stop="77202"/>
                    <exon start="77286" stop="77291"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFWKYWKMPSPVDVSQNGNARHAEAAPSLFEIEEDLARLLERPRQVNIERKRSFDERSFSEMSMTHSPPRQVYKNSENSSRVFDNMVGVYSPGRWSGIHTPRSTFGYEPHPIIGEAWEALRRSIVNFRDQPVGTIAAIDNSAEELNYDQVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="80561" PGL_stop="80137"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80561" e_stop="80137"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80561" e_stop="80137" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80561" stop="80137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGTACAATCTCGTAGCCAATTCATAAAAAATTCAACATTTTTGCGACAAACTAAAAGAGAGTGTTTACGAATTGCAAAAAGAGAGAAAAAAAAAGCATGGCATTCGAAAGAAAATTTGTGTACAAGGATATTAACAAGTCCAAGAAGCAGATCTTTTCATGGTAGGCTTCATCTGTTTATCTTCTTCAAGTGATATCATACCCAAATGAGATGGATCTTCCAGCATCATTCTAGCTACCAAGTAACCAGCAATGGACCATGTCTGGAACTTACGCGCCTGCTTTCCAATAAATCGACCAAGCTTTCCGTCGTAATACTCTGGCCAGCTATCTTTTAGTAAACGCGATTCAGCTAGTTCAATGGCCCGTCGTGCTATTTGGGGTCGACCAGTCTTGATAGCTGCTGCAGTAAGGAGCCACAGAAG</gDNA_template>
            <first_frame> V  Y  N  L  V  A  N  S  *  K  I  Q  H  F  C  D  K  L  K  E  S  V  Y  E  L  Q  K  E  R  K  K  K  H  G  I  R  K  K  I  C  V  Q  G  Y  *  Q  V  Q  E  A  D  L  F  M  V  G  F  I  C  L  S  S  S  S  D  I  I  P  K  *  D  G  S  S  S  I  I  L  A  T  K  *  P  A  M  D  H  V  W  N  L  R  A  C  F  P  I  N  R  P  S  F  P  S  *  Y  S  G  Q  L  S  F  S  K  R  D  S  A  S  S  M  A  R  R  A  I  W  G  R  P  V  L  I  A  A  A  V  R  S  H  R   </first_frame>
            <second_frame>  C  T  I  S  *  P  I  H  K  K  F  N  I  F  A  T  N  *  K  R  V  F  T  N  C  K  K  R  E  K  K  S  M  A  F  E  R  K  F  V  Y  K  D  I  N  K  S  K  K  Q  I  F  S  W  *  A  S  S  V  Y  L  L  Q  V  I  S  Y  P  N  E  M  D  L  P  A  S  F  *  L  P  S  N  Q  Q  W  T  M  S  G  T  Y  A  P  A  F  Q  *  I  D  Q  A  F  R  R  N  T  L  A  S  Y  L  L  V  N  A  I  Q  L  V  Q  W  P  V  V  L  F  G  V  D  Q  S  *  *  L  L  Q  *  G  A  T  E  </second_frame>
            <third_frame>   V  Q  S  R  S  Q  F  I  K  N  S  T  F  L  R  Q  T  K  R  E  C  L  R  I  A  K  R  E  K  K  K  A  W  H  S  K  E  N  L  C  T  R  I  L  T  S  P  R  S  R  S  F  H  G  R  L  H  L  F  I  F  F  K  *  Y  H  T  Q  M  R  W  I  F  Q  H  H  S  S  Y  Q  V  T  S  N  G  P  C  L  E  L  T  R  L  L  S  N  K  S  T  K  L  S  V  V  I  L  W  P  A  I  F  *  *  T  R  F  S  *  F  N  G  P  S  C  Y  L  G  S  T  S  L  D  S  C  C  S  K  E  P  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0101P06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="86681" PGL_stop="82285"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86681" e_stop="86623"/>
            <exon e_start="84847" e_stop="84467"/>
            <exon e_start="83865" e_stop="83796"/>
            <exon e_start="83272" e_stop="83106"/>
            <exon e_start="82998" e_stop="82925"/>
            <exon e_start="82561" e_stop="82285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.954" e_score="0.966"/>
          <exon-intron don_prob="0.939" acc_prob="0.991" e_score="0.971"/>
          <exon-intron don_prob="0.462" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.585" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="86681" e_stop="86623" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.954">
            <gDNA_intron_boundary i_start="86622" i_stop="84848" i_length="1775"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="84847" e_stop="84467" e_length="381"/>
          </exon>
          <intron i_serial="2" don_prob="0.939" acc_prob="0.991">
            <gDNA_intron_boundary i_start="84466" i_stop="83866" i_length="601"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83865" e_stop="83796" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.462" acc_prob="0.956">
            <gDNA_intron_boundary i_start="83795" i_stop="83273" i_length="523"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83272" e_stop="83106" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.585" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83105" i_stop="82999" i_length="107"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="82998" e_stop="82925" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.997">
            <gDNA_intron_boundary i_start="82924" i_stop="82562" i_length="363"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="82561" e_stop="82285" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86681" stop="86623"/>
              <exon start="84847" stop="84467"/>
              <exon start="83865" stop="83796"/>
              <exon start="83272" stop="83201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86670" stop="86623"/>
              <exon start="84847" stop="84467"/>
              <exon start="83865" stop="83796"/>
              <exon start="83272" stop="83234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86660" stop="86623"/>
              <exon start="84847" stop="84467"/>
              <exon start="83865" stop="83796"/>
              <exon start="83272" stop="83202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84847" stop="84467"/>
              <exon start="83865" stop="83796"/>
              <exon start="83272" stop="83236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84675" stop="84467"/>
              <exon start="83865" stop="83796"/>
              <exon start="83272" stop="83106"/>
              <exon start="82998" stop="82925"/>
              <exon start="82561" stop="82479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83865" stop="83796"/>
              <exon start="83272" stop="83106"/>
              <exon start="82998" stop="82925"/>
              <exon start="82561" stop="82285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83865" stop="83796"/>
              <exon start="83272" stop="83106"/>
              <exon start="82998" stop="82925"/>
              <exon start="82561" stop="82285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83865" stop="83796"/>
              <exon start="83272" stop="83106"/>
              <exon start="82998" stop="82925"/>
              <exon start="82561" stop="82310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293529" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTACTCTGTCGCCGGTTGCCGCCGGTTGTCGCTGCTCGCACGTCTTCTCTTTTTCAG : CTGATATAAGCCCAAAATTGTAGCTTATGTTTGGACTAAACTACAAATTGGTTAAGGTGCTCCCATCGACAATACACTATTGGAGAACGAGTGCAGAGGTCTGATATTTCTCGTTCAAGTGTCGACTCAACGCCGAGAGAAGTCGCCTTTTTTGGTTGAGAAAAACCTCGAAACTGCCCTTTGGCTCATCTTAATGTAACTATTATTGTGACAGAGAAGATAAGAACATTGTTTTTGTGAAATCAGATGTCGACAGCAACATACCCACCACCCCCTCCGTTTTATAGGCTGTACAAGGACTATCTTCAAGACCCCAAGTCTGCTCCGGAACCTCCCCCTCCAATTGAGGGCACCTATGTCCTCTTTGGTAGCAACTACACT : ACTGATGATGTACTCCCAAATTTGGAAGAGCAGGGTGTGCGTCAGTTATACCCAAAAGGGCCTAATGTTG : ATTTCAAGAAAGAACTAAGAGCACTTAACAGAGAATTGCAGCTACATATATTGGAGCTTGCTGATGTTCTTGTAGAGCGCCCTTCGCAATATGCCAGGAGAGTGGAAGAGATATCTCTGATATTCAAGAACTTGCACCACCTACTCAATTCTCTGCGTCCTCACCAG : GCTCGAGCCACACTTATCCACATTCTAGAACTTCAGATACAACGACGTAAACAAGCAATAGAGGATATCAAGCG : GAGAAGGGAAGAAGCTCAGAAGCTTCTAAAGGAGGCACTTGGTACCCTTGAGGGACAGTAGAATGCTCTTTAGACTTTACACACACAGCTGGCAGAATTAGTGTCTAGAATGCTTTGAAATTACAGTATAGAAATCATTCAGTCCTAATGTGAAATTTTCTTTATTCACTTGCCTGAATTTTATACAGTGACAATGCTTTTATGTGGCAAGTGTCACAATCCAGTGCCAAAAATTCGACGTTTCAGTCATCGAGGCAATACAGAGTTTCGATTAAGA</gDNA_template>
            <first_frame> V  Y  S  V  A  G  C  R  R  L  S  L  L  A  R  L  L  F  F  S :   *  Y  K  P  K  I  V  A  Y  V  W  T  K  L  Q  I  G  *  G  A  P  I  D  N  T  L  L  E  N  E  C  R  G  L  I  F  L  V  Q  V  S  T  Q  R  R  E  K  S  P  F  L  V  E  K  N  L  E  T  A  L  W  L  I  L  M  *  L  L  L  *  Q  R  R  *  E  H  C  F  C  E  I  R  C  R  Q  Q  H  T  H  H  P  L  R  F  I  G  C  T  R  T  I  F  K  T  P  S  L  L  R  N  L  P  L  Q  L  R  A  P  M  S  S  L  V  A  T  T  L :   L  M  M  Y  S  Q  I  W  K  S  R  V  C  V  S  Y  T  Q  K  G  L  M  L  :  I  S  R  K  N  *  E  H  L  T  E  N  C  S  Y  I  Y  W  S  L  L  M  F  L  *  S  A  L  R  N  M  P  G  E  W  K  R  Y  L  *  Y  S  R  T  C  T  T  Y  S  I  L  C  V  L  T  R :   L  E  P  H  L  S  T  F  *  N  F  R  Y  N  D  V  N  K  Q  *  R  I  S  S   : G  E  G  K  K  L  R  S  F  *  R  R  H  L  V  P  L  R  D  S  R  M  L  F  R  L  Y  T  H  S  W  Q  N  *  C  L  E  C  F  E  I  T  V  *  K  S  F  S  P  N  V  K  F  S  L  F  T  C  L  N  F  I  Q  *  Q  C  F  Y  V  A  S  V  T  I  Q  C  Q  K  F  D  V  S  V  I  E  A  I  Q  S  F  D  *   </first_frame>
            <second_frame>  S  T  L  S  P  V  A  A  G  C  R  C  S  H  V  F  S  F  S   : A  D  I  S  P  K  L  *  L  M  F  G  L  N  Y  K  L  V  K  V  L  P  S  T  I  H  Y  W  R  T  S  A  E  V  *  Y  F  S  F  K  C  R  L  N  A  E  R  S  R  L  F  W  L  R  K  T  S  K  L  P  F  G  S  S  *  C  N  Y  Y  C  D  R  E  D  K  N  I  V  F  V  K  S  D  V  D  S  N  I  P  T  T  P  S  V  L  *  A  V  Q  G  L  S  S  R  P  Q  V  C  S  G  T  S  P  S  N  *  G  H  L  C  P  L  W  *  Q  L  H   : Y  *  *  C  T  P  K  F  G  R  A  G  C  A  S  V  I  P  K  R  A  *  C  * :   F  Q  E  R  T  K  S  T  *  Q  R  I  A  A  T  Y  I  G  A  C  *  C  S  C  R  A  P  F  A  I  C  Q  E  S  G  R  D  I  S  D  I  Q  E  L  A  P  P  T  Q  F  S  A  S  S  P   : G  S  S  H  T  Y  P  H  S  R  T  S  D  T  T  T  *  T  S  N  R  G  Y  Q  A  :  E  K  G  R  S  S  E  A  S  K  G  G  T  W  Y  P  *  G  T  V  E  C  S  L  D  F  T  H  T  A  G  R  I  S  V  *  N  A  L  K  L  Q  Y  R  N  H  S  V  L  M  *  N  F  L  Y  S  L  A  *  I  L  Y  S  D  N  A  F  M  W  Q  V  S  Q  S  S  A  K  N  S  T  F  Q  S  S  R  Q  Y  R  V  S  I  K  </second_frame>
            <third_frame>   L  L  C  R  R  L  P  P  V  V  A  A  R  T  S  S  L  F  Q  :  L  I  *  A  Q  N  C  S  L  C  L  D  *  T  T  N  W  L  R  C  S  H  R  Q  Y  T  I  G  E  R  V  Q  R  S  D  I  S  R  S  S  V  D  S  T  P  R  E  V  A  F  F  G  *  E  K  P  R  N  C  P  L  A  H  L  N  V  T  I  I  V  T  E  K  I  R  T  L  F  L  *  N  Q  M  S  T  A  T  Y  P  P  P  P  P  F  Y  R  L  Y  K  D  Y  L  Q  D  P  K  S  A  P  E  P  P  P  P  I  E  G  T  Y  V  L  F  G  S  N  Y  T  :  T  D  D  V  L  P  N  L  E  E  Q  G  V  R  Q  L  Y  P  K  G  P  N  V   : D  F  K  K  E  L  R  A  L  N  R  E  L  Q  L  H  I  L  E  L  A  D  V  L  V  E  R  P  S  Q  Y  A  R  R  V  E  E  I  S  L  I  F  K  N  L  H  H  L  L  N  S  L  R  P  H  Q  :  A  R  A  T  L  I  H  I  L  E  L  Q  I  Q  R  R  K  Q  A  I  E  D  I  K  R :   R  R  E  E  A  Q  K  L  L  K  E  A  L  G  T  L  E  G  Q  *  N  A  L  *  T  L  H  T  Q  L  A  E  L  V  S  R  M  L  *  N  Y  S  I  E  I  I  Q  S  *  C  E  I  F  F  I  H  L  P  E  F  Y  T  V  T  M  L  L  C  G  K  C  H  N  P  V  P  K  I  R  R  F  S  H  R  G  N  T  E  F  R  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84607" stop="84467"/>
                    <exon start="83865" stop="83796"/>
                    <exon start="83272" stop="83106"/>
                    <exon start="82998" stop="82925"/>
                    <exon start="82561" stop="82501"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQMSTATYPPPPPFYRLYKDYLQDPKSAPEPPPPIEGTYVLFGSNYTTDDVLPNLEEQGVRQLYPKGPNVDFKKELRALNRELQLHILELADVLVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAIEDIKRRREEAQKLLKEALGTLEGQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="87930" PGL_stop="91536"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89597" e_stop="89902"/>
            <exon e_start="90036" e_stop="90243"/>
            <exon e_start="90329" e_stop="90507"/>
            <exon e_start="90583" e_stop="90637"/>
            <exon e_start="90761" e_stop="90830"/>
            <exon e_start="90907" e_stop="90997"/>
            <exon e_start="91094" e_stop="91444"/>
            <exon e_start="91513" e_stop="91536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.771" e_score="0.954"/>
          <exon-intron don_prob="0.886" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="89597" e_stop="89902" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.771">
            <gDNA_intron_boundary i_start="89903" i_stop="90035" i_length="133"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90036" e_stop="90243" e_length="208"/>
          </exon>
          <intron i_serial="2" don_prob="0.886" acc_prob="0.963">
            <gDNA_intron_boundary i_start="90244" i_stop="90328" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90329" e_stop="90507" e_length="179"/>
          </exon>
          <intron i_serial="3" don_prob="0.866" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90508" i_stop="90582" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90583" e_stop="90637" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90638" i_stop="90760" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90761" e_stop="90830" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90831" i_stop="90906" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90907" e_stop="90997" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.950" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90998" i_stop="91093" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="91094" e_stop="91444" e_length="351"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="91445" i_stop="91512" i_length="68"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="91513" e_stop="91536" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89597" stop="89902"/>
              <exon start="90036" stop="90243"/>
              <exon start="90329" stop="90390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89671" stop="89902"/>
              <exon start="90036" stop="90243"/>
              <exon start="90329" stop="90487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89796" stop="89902"/>
              <exon start="90036" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89818" stop="89902"/>
              <exon start="90036" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90830"/>
              <exon start="90907" stop="90985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90087" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90830"/>
              <exon start="90907" stop="90997"/>
              <exon start="91094" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90168" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90830"/>
              <exon start="90907" stop="90997"/>
              <exon start="91094" stop="91444"/>
              <exon start="91513" stop="91536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTTATTTCGCTTTTTAAACCTTTGGAATCATTAAAAAGTACTTAATCTGCAATTTGGGTGATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG : ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG : TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA : GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG : GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA : GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAG : GATTCTCAAGTTCCACTTGAGTTGAGGAAGTCATTTAAGAGGTGTGCTGCTCATGTTTATATAAGTCGGCTGACTAAGGGCTTACAGACTTCGATGAGAGGTGACACAGTCTCCTCGCATCCTTCTCAGTCCTCACCTCCTGATGGAGTGAAGCAAGAGCCTCCTATAATTCAGAACAGCCCAACTGTAAAGGTGAATGATATGCATGGAATTGTTTCTACTGGGAATGTTGCCTCTACTGTTGAGAAGAATCCAACTGAAGTTAGAAATGCAATCCTTTTGCACCAAAGACTCCTCCAAGATCAGCAACAGGCTTCTACTACATCTGGGTTCAATTCTTTAGCAAAGCAG : AATGCAGATTTCCTTTCATTGTCA</gDNA_template>
            <first_frame> V  L  F  R  F  L  N  L  W  N  H  *  K  V  L  N  L  Q  F  G  *  L  Y  W  P  S  F  W  F  *  S  L  I  R  *  N  G  S  C  L  S  *  T  L  D  F  Q  L  I  I  N  C  L  L  L  D  P  L  P  F  V  V  I  K  K  R  I  R  K  L  I  S  P  P  L  P  I  S  K  K  A  N  R  M  S  D  G  A  E  T  L  R  K  Y  G  N  K  S  K  L  N  L  :  T  H  C  G  S  S  R  C  I  K  E  E  L  D  C  P  I  T  K  D  E  E  E  V  A  E  T  L  Y  A  L  A  G  M  I  P  D  V  D  T  L  S  E  S  K  I  N  S  Q  L  P  E  V  K  S  L  D  L  P  E  P  E  A  S  V  I  A  S  G   : V  V  T  T  E  Q  D  I  R  T  N  S  S  Q  F  S  A  E  A  L  K  Q  F  P  D  I  A  V  S  A  G  E  A  A  K  S  K  S  F  H  D  A  S  P  C  D  T  F  I  N  T  E  Q  L  E  I  S  S  Q  Q  :  V  V  A  Y  Q  A  N  K  Q  N  T  H  K  E  N  R  N  N   : G  S  L  L  W  P  G  L  S  A  A  G  S  S  C  S  D  I  L  D  S  S  P  Q :   F  P  I  G  K  F  P  V  W  I  G  S  A  G  T  D  H  Q  A  Q  N  A  K  S  C  L  P  T  M  K  :  D  S  Q  V  P  L  E  L  R  K  S  F  K  R  C  A  A  H  V  Y  I  S  R  L  T  K  G  L  Q  T  S  M  R  G  D  T  V  S  S  H  P  S  Q  S  S  P  P  D  G  V  K  Q  E  P  P  I  I  Q  N  S  P  T  V  K  V  N  D  M  H  G  I  V  S  T  G  N  V  A  S  T  V  E  K  N  P  T  E  V  R  N  A  I  L  L  H  Q  R  L  L  Q  D  Q  Q  Q  A  S  T  T  S  G  F  N  S  L  A  K  Q  :  N  A  D  F  L  S  L  S </first_frame>
            <second_frame>  S  Y  F  A  F  *  T  F  G  I  I  K  K  Y  L  I  C  N  L  G  D  C  T  G  Q  V  S  G  F  N  L  L  *  G  E  M  V  L  V  *  V  K  L  W  T  S  N  *  S  *  I  V  C  F  W  I  L  C  P  L  *  L  S  R  R  E  F  A  S  S  S  L  H  L  C  R  F  P  K  R  R  I  A  C  Q  M  E  L  K  H  *  G  N  M  A  T  S  L  S  L  I  * :   L  I  V  V  Q  V  G  V  *  R  R  S  L  I  V  Q  S  P  K  M  K  R  K  W  L  K  P  C  M  L  W  L  V  *  S  Q  M  L  T  P  *  A  K  A  K  *  I  V  N  F  L  K  *  N  L  W  T  Y  Q  N  L  R  L  L  *  S  Q  V  E  :  L  *  Q  Q  N  R  T  *  G  Q  T  A  P  N  S  V  L  K  L  *  S  S  F  Q  T  *  L  F  L  L  E  K  L  P  N  Q  N  H  F  M  M  L  P  R  V  I  H  S  S  T  Q  S  S  *  K  F  H  R  N  K :   L  L  L  I  K  P  T  N  K  T  H  T  R  R  I  G  I  M  :  V  H  C  C  G  Q  A  C  L  Q  Q  G  H  L  V  P  T  Y  L  I  L  H  H   : S  F  Q  L  A  N  F  L  S  G  S  G  A  L  A  L  I  I  K  L  K  M  Q  N  L  V  Y  Q  P  *  R :   I  L  K  F  H  L  S  *  G  S  H  L  R  G  V  L  L  M  F  I  *  V  G  *  L  R  A  Y  R  L  R  *  E  V  T  Q  S  P  R  I  L  L  S  P  H  L  L  M  E  *  S  K  S  L  L  *  F  R  T  A  Q  L  *  R  *  M  I  C  M  E  L  F  L  L  G  M  L  P  L  L  L  R  R  I  Q  L  K  L  E  M  Q  S  F  C  T  K  D  S  S  K  I  S  N  R  L  L  L  H  L  G  S  I  L  *  Q  S  R :   M  Q  I  S  F  H  C   </second_frame>
            <third_frame>   L  I  S  L  F  K  P  L  E  S  L  K  S  T  *  S  A  I  W  V  I  V  L  A  K  F  L  V  L  I  S  Y  K  V  K  W  F  L  F  E  L  N  F  G  L  P  I  D  H  K  L  F  A  F  G  S  F  A  L  C  S  Y  Q  E  E  N  S  Q  A  H  L  S  T  F  A  D  F  Q  K  G  E  S  H  V  R  W  S  *  N  T  K  E  I  W  Q  Q  V  *  A  *  F   : D  S  L  W  F  K  S  V  Y  K  G  G  A  *  L  S  N  H  Q  R  *  R  G  S  G  *  N  L  V  C  F  G  W  Y  D  P  R  C  *  H  L  E  R  K  Q  N  K  *  S  T  S  *  S  E  I  F  G  L  T  R  T  *  G  F  C  N  R  K  W  S :   C  N  N  R  T  G  H  K  D  K  Q  L  P  I  Q  C  *  S  F  E  A  V  S  R  H  S  C  F  C  W  R  S  C  Q  I  K  I  I  S  *  C  F  P  V  *  Y  I  H  Q  H  R  A  A  R  N  F  I  A  T   : S  C  C  L  S  S  Q  Q  T  K  H  T  Q  G  E  *  E  *  W :   F  I  V  V  A  R  L  V  C  S  R  V  I  L  F  R  H  T  *  F  F  T  T  :  V  S  N  W  Q  I  S  C  L  D  R  E  R  W  H  *  S  S  S  S  K  C  K  I  L  S  T  N  H  E   : G  F  S  S  S  T  *  V  E  E  V  I  *  E  V  C  C  S  C  L  Y  K  S  A  D  *  G  L  T  D  F  D  E  R  *  H  S  L  L  A  S  F  S  V  L  T  S  *  W  S  E  A  R  A  S  Y  N  S  E  Q  P  N  C  K  G  E  *  Y  A  W  N  C  F  Y  W  E  C  C  L  Y  C  *  E  E  S  N  *  S  *  K  C  N  P  F  A  P  K  T  P  P  R  S  A  T  G  F  Y  Y  I  W  V  Q  F  F  S  K  A   : E  C  R  F  P  F  I  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89723" stop="89902"/>
                    <exon start="90036" stop="90243"/>
                    <exon start="90329" stop="90507"/>
                    <exon start="90583" stop="90637"/>
                    <exon start="90761" stop="90830"/>
                    <exon start="90907" stop="90997"/>
                    <exon start="91094" stop="91444"/>
                    <exon start="91513" stop="91536"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1158</number_coding_nucleotides>
                  <number_encoded_amino_acids>386</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLDFQLIINCLLLDPLPFVVIKKRIRKLISPPLPISKKANRMSDGAETLRKYGNKSKLNLTHCGSSRCIKEELDCPITKDEEEVAETLYALAGMIPDVDTLSESKINSQLPEVKSLDLPEPEASVIASGVVTTEQDIRTNSSQFSAEALKQFPDIAVSAGEAAKSKSFHDASPCDTFINTEQLEISSQQVVAYQANKQNTHKENRNNGSLLWPGLSAAGSSCSDILDSSPQFPIGKFPVWIGSAGTDHQAQNAKSCLPTMKDSQVPLELRKSFKRCAAHVYISRLTKGLQTSMRGDTVSSHPSQSSPPDGVKQEPPIIQNSPTVKVNDMHGIVSTGNVASTVEKNPTEVRNAILLHQRLLQDQQQASTTSGFNSLAKQNADFLSLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="89658" e_stop="89697"/>
            <exon e_start="89781" e_stop="89902"/>
            <exon e_start="90036" e_stop="90243"/>
            <exon e_start="90329" e_stop="90507"/>
            <exon e_start="90583" e_stop="90637"/>
            <exon e_start="90761" e_stop="90830"/>
            <exon e_start="90907" e_stop="90997"/>
            <exon e_start="91094" e_stop="91444"/>
            <exon e_start="91513" e_stop="91536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.476" acc_prob="0.699" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.771" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89658" e_stop="89697" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.476" acc_prob="0.699">
            <gDNA_intron_boundary i_start="89698" i_stop="89780" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89781" e_stop="89902" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.943" acc_prob="0.771">
            <gDNA_intron_boundary i_start="89903" i_stop="90035" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90036" e_stop="90243" e_length="208"/>
          </exon>
          <intron i_serial="3" don_prob="0.886" acc_prob="0.963">
            <gDNA_intron_boundary i_start="90244" i_stop="90328" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90329" e_stop="90507" e_length="179"/>
          </exon>
          <intron i_serial="4" don_prob="0.866" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90508" i_stop="90582" i_length="75"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90583" e_stop="90637" e_length="55"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90638" i_stop="90760" i_length="123"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90761" e_stop="90830" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90831" i_stop="90906" i_length="76"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90907" e_stop="90997" e_length="91"/>
          </exon>
          <intron i_serial="7" don_prob="0.950" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90998" i_stop="91093" i_length="96"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="91094" e_stop="91444" e_length="351"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="91445" i_stop="91512" i_length="68"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="91513" e_stop="91536" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89658" stop="89697"/>
              <exon start="89781" stop="89902"/>
              <exon start="90036" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89658" stop="89697"/>
              <exon start="89781" stop="89902"/>
              <exon start="90036" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89658" stop="89697"/>
              <exon start="89781" stop="89902"/>
              <exon start="90036" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89796" stop="89902"/>
              <exon start="90036" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89818" stop="89902"/>
              <exon start="90036" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90830"/>
              <exon start="90907" stop="90985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90087" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90830"/>
              <exon start="90907" stop="90997"/>
              <exon start="91094" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90168" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90830"/>
              <exon start="90907" stop="90997"/>
              <exon start="91094" stop="91444"/>
              <exon start="91513" stop="91536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAG : TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG : ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG : TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA : GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG : GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA : GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAG : GATTCTCAAGTTCCACTTGAGTTGAGGAAGTCATTTAAGAGGTGTGCTGCTCATGTTTATATAAGTCGGCTGACTAAGGGCTTACAGACTTCGATGAGAGGTGACACAGTCTCCTCGCATCCTTCTCAGTCCTCACCTCCTGATGGAGTGAAGCAAGAGCCTCCTATAATTCAGAACAGCCCAACTGTAAAGGTGAATGATATGCATGGAATTGTTTCTACTGGGAATGTTGCCTCTACTGTTGAGAAGAATCCAACTGAAGTTAGAAATGCAATCCTTTTGCACCAAAGACTCCTCCAAGATCAGCAACAGGCTTCTACTACATCTGGGTTCAATTCTTTAGCAAAGCAG : AATGCAGATTTCCTTTCATTGTCA</gDNA_template>
            <first_frame> D  C  T  G  Q  V  S  G  F  N  L  L  *   : V  I  K  K  R  I  R  K  L  I  S  P  P  L  P  I  S  K  K  A  N  R  M  S  D  G  A  E  T  L  R  K  Y  G  N  K  S  K  L  N  L  :  T  H  C  G  S  S  R  C  I  K  E  E  L  D  C  P  I  T  K  D  E  E  E  V  A  E  T  L  Y  A  L  A  G  M  I  P  D  V  D  T  L  S  E  S  K  I  N  S  Q  L  P  E  V  K  S  L  D  L  P  E  P  E  A  S  V  I  A  S  G   : V  V  T  T  E  Q  D  I  R  T  N  S  S  Q  F  S  A  E  A  L  K  Q  F  P  D  I  A  V  S  A  G  E  A  A  K  S  K  S  F  H  D  A  S  P  C  D  T  F  I  N  T  E  Q  L  E  I  S  S  Q  Q  :  V  V  A  Y  Q  A  N  K  Q  N  T  H  K  E  N  R  N  N   : G  S  L  L  W  P  G  L  S  A  A  G  S  S  C  S  D  I  L  D  S  S  P  Q :   F  P  I  G  K  F  P  V  W  I  G  S  A  G  T  D  H  Q  A  Q  N  A  K  S  C  L  P  T  M  K  :  D  S  Q  V  P  L  E  L  R  K  S  F  K  R  C  A  A  H  V  Y  I  S  R  L  T  K  G  L  Q  T  S  M  R  G  D  T  V  S  S  H  P  S  Q  S  S  P  P  D  G  V  K  Q  E  P  P  I  I  Q  N  S  P  T  V  K  V  N  D  M  H  G  I  V  S  T  G  N  V  A  S  T  V  E  K  N  P  T  E  V  R  N  A  I  L  L  H  Q  R  L  L  Q  D  Q  Q  Q  A  S  T  T  S  G  F  N  S  L  A  K  Q  :  N  A  D  F  L  S  L  S </first_frame>
            <second_frame>  I  V  L  A  K  F  L  V  L  I  S  Y  K  :  L  S  R  R  E  F  A  S  S  S  L  H  L  C  R  F  P  K  R  R  I  A  C  Q  M  E  L  K  H  *  G  N  M  A  T  S  L  S  L  I  * :   L  I  V  V  Q  V  G  V  *  R  R  S  L  I  V  Q  S  P  K  M  K  R  K  W  L  K  P  C  M  L  W  L  V  *  S  Q  M  L  T  P  *  A  K  A  K  *  I  V  N  F  L  K  *  N  L  W  T  Y  Q  N  L  R  L  L  *  S  Q  V  E  :  L  *  Q  Q  N  R  T  *  G  Q  T  A  P  N  S  V  L  K  L  *  S  S  F  Q  T  *  L  F  L  L  E  K  L  P  N  Q  N  H  F  M  M  L  P  R  V  I  H  S  S  T  Q  S  S  *  K  F  H  R  N  K :   L  L  L  I  K  P  T  N  K  T  H  T  R  R  I  G  I  M  :  V  H  C  C  G  Q  A  C  L  Q  Q  G  H  L  V  P  T  Y  L  I  L  H  H   : S  F  Q  L  A  N  F  L  S  G  S  G  A  L  A  L  I  I  K  L  K  M  Q  N  L  V  Y  Q  P  *  R :   I  L  K  F  H  L  S  *  G  S  H  L  R  G  V  L  L  M  F  I  *  V  G  *  L  R  A  Y  R  L  R  *  E  V  T  Q  S  P  R  I  L  L  S  P  H  L  L  M  E  *  S  K  S  L  L  *  F  R  T  A  Q  L  *  R  *  M  I  C  M  E  L  F  L  L  G  M  L  P  L  L  L  R  R  I  Q  L  K  L  E  M  Q  S  F  C  T  K  D  S  S  K  I  S  N  R  L  L  L  H  L  G  S  I  L  *  Q  S  R :   M  Q  I  S  F  H  C   </second_frame>
            <third_frame>   L  Y  W  P  S  F  W  F  *  S  L  I  S :   Y  Q  E  E  N  S  Q  A  H  L  S  T  F  A  D  F  Q  K  G  E  S  H  V  R  W  S  *  N  T  K  E  I  W  Q  Q  V  *  A  *  F   : D  S  L  W  F  K  S  V  Y  K  G  G  A  *  L  S  N  H  Q  R  *  R  G  S  G  *  N  L  V  C  F  G  W  Y  D  P  R  C  *  H  L  E  R  K  Q  N  K  *  S  T  S  *  S  E  I  F  G  L  T  R  T  *  G  F  C  N  R  K  W  S :   C  N  N  R  T  G  H  K  D  K  Q  L  P  I  Q  C  *  S  F  E  A  V  S  R  H  S  C  F  C  W  R  S  C  Q  I  K  I  I  S  *  C  F  P  V  *  Y  I  H  Q  H  R  A  A  R  N  F  I  A  T   : S  C  C  L  S  S  Q  Q  T  K  H  T  Q  G  E  *  E  *  W :   F  I  V  V  A  R  L  V  C  S  R  V  I  L  F  R  H  T  *  F  F  T  T  :  V  S  N  W  Q  I  S  C  L  D  R  E  R  W  H  *  S  S  S  S  K  C  K  I  L  S  T  N  H  E   : G  F  S  S  S  T  *  V  E  E  V  I  *  E  V  C  C  S  C  L  Y  K  S  A  D  *  G  L  T  D  F  D  E  R  *  H  S  L  L  A  S  F  S  V  L  T  S  *  W  S  E  A  R  A  S  Y  N  S  E  Q  P  N  C  K  G  E  *  Y  A  W  N  C  F  Y  W  E  C  C  L  Y  C  *  E  E  S  N  *  S  *  K  C  N  P  F  A  P  K  T  P  P  R  S  A  T  G  F  Y  Y  I  W  V  Q  F  F  S  K  A   : E  C  R  F  P  F  I  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89697" stop="89902"/>
                    <exon start="90036" stop="90243"/>
                    <exon start="90329" stop="90507"/>
                    <exon start="90583" stop="90637"/>
                    <exon start="90761" stop="90830"/>
                    <exon start="90907" stop="90997"/>
                    <exon start="91094" stop="91444"/>
                    <exon start="91513" stop="91536"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1101</number_coding_nucleotides>
                  <number_encoded_amino_acids>367</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIKKRIRKLISPPLPISKKANRMSDGAETLRKYGNKSKLNLTHCGSSRCIKEELDCPITKDEEEVAETLYALAGMIPDVDTLSESKINSQLPEVKSLDLPEPEASVIASGVVTTEQDIRTNSSQFSAEALKQFPDIAVSAGEAAKSKSFHDASPCDTFINTEQLEISSQQVVAYQANKQNTHKENRNNGSLLWPGLSAAGSSCSDILDSSPQFPIGKFPVWIGSAGTDHQAQNAKSCLPTMKDSQVPLELRKSFKRCAAHVYISRLTKGLQTSMRGDTVSSHPSQSSPPDGVKQEPPIIQNSPTVKVNDMHGIVSTGNVASTVEKNPTEVRNAILLHQRLLQDQQQASTTSGFNSLAKQNADFLSLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="88972" e_stop="89264"/>
            <exon e_start="89345" e_stop="89402"/>
            <exon e_start="89781" e_stop="89902"/>
            <exon e_start="90036" e_stop="90243"/>
            <exon e_start="90329" e_stop="90507"/>
            <exon e_start="90583" e_stop="90637"/>
            <exon e_start="90761" e_stop="90830"/>
            <exon e_start="90907" e_stop="90997"/>
            <exon e_start="91094" e_stop="91444"/>
            <exon e_start="91513" e_stop="91536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="0.932"/>
          <exon-intron don_prob="0.993" acc_prob="0.699" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.771" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="88972" e_stop="89264" e_length="293"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89265" i_stop="89344" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89345" e_stop="89402" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.699">
            <gDNA_intron_boundary i_start="89403" i_stop="89780" i_length="378"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89781" e_stop="89902" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.943" acc_prob="0.771">
            <gDNA_intron_boundary i_start="89903" i_stop="90035" i_length="133"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90036" e_stop="90243" e_length="208"/>
          </exon>
          <intron i_serial="4" don_prob="0.886" acc_prob="0.963">
            <gDNA_intron_boundary i_start="90244" i_stop="90328" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90329" e_stop="90507" e_length="179"/>
          </exon>
          <intron i_serial="5" don_prob="0.866" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90508" i_stop="90582" i_length="75"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90583" e_stop="90637" e_length="55"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90638" i_stop="90760" i_length="123"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90761" e_stop="90830" e_length="70"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90831" i_stop="90906" i_length="76"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="90907" e_stop="90997" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="0.950" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90998" i_stop="91093" i_length="96"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="91094" e_stop="91444" e_length="351"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="91445" i_stop="91512" i_length="68"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="91513" e_stop="91536" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88972" stop="89264"/>
              <exon start="89345" stop="89402"/>
              <exon start="89781" stop="89902"/>
              <exon start="90036" stop="90132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89796" stop="89902"/>
              <exon start="90036" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89818" stop="89902"/>
              <exon start="90036" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90830"/>
              <exon start="90907" stop="90985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90087" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90830"/>
              <exon start="90907" stop="90997"/>
              <exon start="91094" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90168" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90830"/>
              <exon start="90907" stop="90997"/>
              <exon start="91094" stop="91444"/>
              <exon start="91513" stop="91536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTATCTGTTACAGTTCTTTATCCTTCTTTTTGTTTTGATTTTTCTTGTGATTTCTGCTTTCCACACAAAATTCTCTGATAATATTTCTGGGTTTTGCTTTGAATGCTTAGATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAG : TTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAG : TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG : ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG : TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA : GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG : GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA : GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAG : GATTCTCAAGTTCCACTTGAGTTGAGGAAGTCATTTAAGAGGTGTGCTGCTCATGTTTATATAAGTCGGCTGACTAAGGGCTTACAGACTTCGATGAGAGGTGACACAGTCTCCTCGCATCCTTCTCAGTCCTCACCTCCTGATGGAGTGAAGCAAGAGCCTCCTATAATTCAGAACAGCCCAACTGTAAAGGTGAATGATATGCATGGAATTGTTTCTACTGGGAATGTTGCCTCTACTGTTGAGAAGAATCCAACTGAAGTTAGAAATGCAATCCTTTTGCACCAAAGACTCCTCCAAGATCAGCAACAGGCTTCTACTACATCTGGGTTCAATTCTTTAGCAAAGCAG : AATGCAGATTTCCTTTCATTGTCA</gDNA_template>
            <first_frame> V  I  C  Y  S  S  L  S  F  F  L  F  *  F  F  L  *  F  L  L  S  T  Q  N  S  L  I  I  F  L  G  F  A  L  N  A  *  I  V  R  E  E  M  K  *  L  R  R  N  R  R  K  G  E  K  D  *  V  V  L  V  K  F  S  P  V  *  T  T  L  K  W  V  V  *  S  L  M  I  T  M  R  F  I  P  M  F  L  F  G  S  D  L  S  F  P  K  S :   F  L  M  S  V  M  E  *  I  M  L  L  F  L  G  K  F  V  Q  :  L  S  R  R  E  F  A  S  S  S  L  H  L  C  R  F  P  K  R  R  I  A  C  Q  M  E  L  K  H  *  G  N  M  A  T  S  L  S  L  I  * :   L  I  V  V  Q  V  G  V  *  R  R  S  L  I  V  Q  S  P  K  M  K  R  K  W  L  K  P  C  M  L  W  L  V  *  S  Q  M  L  T  P  *  A  K  A  K  *  I  V  N  F  L  K  *  N  L  W  T  Y  Q  N  L  R  L  L  *  S  Q  V  E  :  L  *  Q  Q  N  R  T  *  G  Q  T  A  P  N  S  V  L  K  L  *  S  S  F  Q  T  *  L  F  L  L  E  K  L  P  N  Q  N  H  F  M  M  L  P  R  V  I  H  S  S  T  Q  S  S  *  K  F  H  R  N  K :   L  L  L  I  K  P  T  N  K  T  H  T  R  R  I  G  I  M  :  V  H  C  C  G  Q  A  C  L  Q  Q  G  H  L  V  P  T  Y  L  I  L  H  H   : S  F  Q  L  A  N  F  L  S  G  S  G  A  L  A  L  I  I  K  L  K  M  Q  N  L  V  Y  Q  P  *  R :   I  L  K  F  H  L  S  *  G  S  H  L  R  G  V  L  L  M  F  I  *  V  G  *  L  R  A  Y  R  L  R  *  E  V  T  Q  S  P  R  I  L  L  S  P  H  L  L  M  E  *  S  K  S  L  L  *  F  R  T  A  Q  L  *  R  *  M  I  C  M  E  L  F  L  L  G  M  L  P  L  L  L  R  R  I  Q  L  K  L  E  M  Q  S  F  C  T  K  D  S  S  K  I  S  N  R  L  L  L  H  L  G  S  I  L  *  Q  S  R :   M  Q  I  S  F  H  C   </first_frame>
            <second_frame>  L  S  V  T  V  L  Y  P  S  F  C  F  D  F  S  C  D  F  C  F  P  H  K  I  L  *  *  Y  F  W  V  L  L  *  M  L  R  L  *  G  R  K  *  N  N  C  E  E  I  E  E  R  G  R  K  I  E  W  C  W  *  S  L  V  Q  Y  E  Q  H  *  N  G  L  F  K  V  *  *  *  R  *  D  S  F  Q  C  F  C  S  E  A  I  *  V  S  Q  K   : V  F  *  *  V  *  W  S  R  S  C  F  C  S  S  E  S  S  F  S :   Y  Q  E  E  N  S  Q  A  H  L  S  T  F  A  D  F  Q  K  G  E  S  H  V  R  W  S  *  N  T  K  E  I  W  Q  Q  V  *  A  *  F   : D  S  L  W  F  K  S  V  Y  K  G  G  A  *  L  S  N  H  Q  R  *  R  G  S  G  *  N  L  V  C  F  G  W  Y  D  P  R  C  *  H  L  E  R  K  Q  N  K  *  S  T  S  *  S  E  I  F  G  L  T  R  T  *  G  F  C  N  R  K  W  S :   C  N  N  R  T  G  H  K  D  K  Q  L  P  I  Q  C  *  S  F  E  A  V  S  R  H  S  C  F  C  W  R  S  C  Q  I  K  I  I  S  *  C  F  P  V  *  Y  I  H  Q  H  R  A  A  R  N  F  I  A  T   : S  C  C  L  S  S  Q  Q  T  K  H  T  Q  G  E  *  E  *  W :   F  I  V  V  A  R  L  V  C  S  R  V  I  L  F  R  H  T  *  F  F  T  T  :  V  S  N  W  Q  I  S  C  L  D  R  E  R  W  H  *  S  S  S  S  K  C  K  I  L  S  T  N  H  E   : G  F  S  S  S  T  *  V  E  E  V  I  *  E  V  C  C  S  C  L  Y  K  S  A  D  *  G  L  T  D  F  D  E  R  *  H  S  L  L  A  S  F  S  V  L  T  S  *  W  S  E  A  R  A  S  Y  N  S  E  Q  P  N  C  K  G  E  *  Y  A  W  N  C  F  Y  W  E  C  C  L  Y  C  *  E  E  S  N  *  S  *  K  C  N  P  F  A  P  K  T  P  P  R  S  A  T  G  F  Y  Y  I  W  V  Q  F  F  S  K  A   : E  C  R  F  P  F  I  V  </second_frame>
            <third_frame>   Y  L  L  Q  F  F  I  L  L  F  V  L  I  F  L  V  I  S  A  F  H  T  K  F  S  D  N  I  S  G  F  C  F  E  C  L  D  C  K  G  G  N  E  I  I  A  K  K  S  K  K  G  G  E  R  L  S  G  A  G  E  V  *  S  S  M  N  N  I  E  M  G  C  L  K  S  D  D  N  D  E  I  H  S  N  V  S  V  R  K  R  F  K  F  P  K  K  :  F  F  D  E  C  N  G  V  D  H  A  S  V  P  R  K  V  R  S   : V  I  K  K  R  I  R  K  L  I  S  P  P  L  P  I  S  K  K  A  N  R  M  S  D  G  A  E  T  L  R  K  Y  G  N  K  S  K  L  N  L  :  T  H  C  G  S  S  R  C  I  K  E  E  L  D  C  P  I  T  K  D  E  E  E  V  A  E  T  L  Y  A  L  A  G  M  I  P  D  V  D  T  L  S  E  S  K  I  N  S  Q  L  P  E  V  K  S  L  D  L  P  E  P  E  A  S  V  I  A  S  G   : V  V  T  T  E  Q  D  I  R  T  N  S  S  Q  F  S  A  E  A  L  K  Q  F  P  D  I  A  V  S  A  G  E  A  A  K  S  K  S  F  H  D  A  S  P  C  D  T  F  I  N  T  E  Q  L  E  I  S  S  Q  Q  :  V  V  A  Y  Q  A  N  K  Q  N  T  H  K  E  N  R  N  N   : G  S  L  L  W  P  G  L  S  A  A  G  S  S  C  S  D  I  L  D  S  S  P  Q :   F  P  I  G  K  F  P  V  W  I  G  S  A  G  T  D  H  Q  A  Q  N  A  K  S  C  L  P  T  M  K  :  D  S  Q  V  P  L  E  L  R  K  S  F  K  R  C  A  A  H  V  Y  I  S  R  L  T  K  G  L  Q  T  S  M  R  G  D  T  V  S  S  H  P  S  Q  S  S  P  P  D  G  V  K  Q  E  P  P  I  I  Q  N  S  P  T  V  K  V  N  D  M  H  G  I  V  S  T  G  N  V  A  S  T  V  E  K  N  P  T  E  V  R  N  A  I  L  L  H  Q  R  L  L  Q  D  Q  Q  Q  A  S  T  T  S  G  F  N  S  L  A  K  Q  :  N  A  D  F  L  S  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89163" stop="89264"/>
                    <exon start="89345" stop="89402"/>
                    <exon start="89781" stop="89902"/>
                    <exon start="90036" stop="90243"/>
                    <exon start="90329" stop="90507"/>
                    <exon start="90583" stop="90637"/>
                    <exon start="90761" stop="90830"/>
                    <exon start="90907" stop="90997"/>
                    <exon start="91094" stop="91444"/>
                    <exon start="91513" stop="91536"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1260</number_coding_nucleotides>
                  <number_encoded_amino_acids>420</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSMNNIEMGCLKSDDNDEIHSNVSVRKRFKFPKKFFDECNGVDHASVPRKVRSVIKKRIRKLISPPLPISKKANRMSDGAETLRKYGNKSKLNLTHCGSSRCIKEELDCPITKDEEEVAETLYALAGMIPDVDTLSESKINSQLPEVKSLDLPEPEASVIASGVVTTEQDIRTNSSQFSAEALKQFPDIAVSAGEAAKSKSFHDASPCDTFINTEQLEISSQQVVAYQANKQNTHKENRNNGSLLWPGLSAAGSSCSDILDSSPQFPIGKFPVWIGSAGTDHQAQNAKSCLPTMKDSQVPLELRKSFKRCAAHVYISRLTKGLQTSMRGDTVSSHPSQSSPPDGVKQEPPIIQNSPTVKVNDMHGIVSTGNVASTVEKNPTEVRNAILLHQRLLQDQQQASTTSGFNSLAKQNADFLSLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="87930" e_stop="88054"/>
            <exon e_start="89083" e_stop="89264"/>
            <exon e_start="89345" e_stop="89402"/>
            <exon e_start="89781" e_stop="89902"/>
            <exon e_start="90036" e_stop="90243"/>
            <exon e_start="90329" e_stop="90507"/>
            <exon e_start="90583" e_stop="90637"/>
            <exon e_start="90761" e_stop="90830"/>
            <exon e_start="90907" e_stop="90997"/>
            <exon e_start="91094" e_stop="91444"/>
            <exon e_start="91513" e_stop="91536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.830" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.699" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.771" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87930" e_stop="88054" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.830" acc_prob="0.994">
            <gDNA_intron_boundary i_start="88055" i_stop="89082" i_length="1028"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89083" e_stop="89264" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89265" i_stop="89344" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89345" e_stop="89402" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.699">
            <gDNA_intron_boundary i_start="89403" i_stop="89780" i_length="378"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89781" e_stop="89902" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.943" acc_prob="0.771">
            <gDNA_intron_boundary i_start="89903" i_stop="90035" i_length="133"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90036" e_stop="90243" e_length="208"/>
          </exon>
          <intron i_serial="5" don_prob="0.886" acc_prob="0.963">
            <gDNA_intron_boundary i_start="90244" i_stop="90328" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90329" e_stop="90507" e_length="179"/>
          </exon>
          <intron i_serial="6" don_prob="0.866" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90508" i_stop="90582" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90583" e_stop="90637" e_length="55"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90638" i_stop="90760" i_length="123"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="90761" e_stop="90830" e_length="70"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90831" i_stop="90906" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="90907" e_stop="90997" e_length="91"/>
          </exon>
          <intron i_serial="9" don_prob="0.950" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90998" i_stop="91093" i_length="96"/>
          </intron>
          <exon e_serial="10" e_score="0.997">
            <gDNA_exon_boundary e_start="91094" e_stop="91444" e_length="351"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="91445" i_stop="91512" i_length="68"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="91513" e_stop="91536" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87930" stop="88054"/>
              <exon start="89083" stop="89264"/>
              <exon start="89345" stop="89402"/>
              <exon start="89781" stop="89902"/>
              <exon start="90036" stop="90196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89796" stop="89902"/>
              <exon start="90036" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89818" stop="89902"/>
              <exon start="90036" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90830"/>
              <exon start="90907" stop="90985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90087" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90830"/>
              <exon start="90907" stop="90997"/>
              <exon start="91094" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90168" stop="90243"/>
              <exon start="90329" stop="90507"/>
              <exon start="90583" stop="90637"/>
              <exon start="90761" stop="90830"/>
              <exon start="90907" stop="90997"/>
              <exon start="91094" stop="91444"/>
              <exon start="91513" stop="91536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGG : ATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAG : TTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAG : TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG : ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG : TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA : GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG : GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA : GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAG : GATTCTCAAGTTCCACTTGAGTTGAGGAAGTCATTTAAGAGGTGTGCTGCTCATGTTTATATAAGTCGGCTGACTAAGGGCTTACAGACTTCGATGAGAGGTGACACAGTCTCCTCGCATCCTTCTCAGTCCTCACCTCCTGATGGAGTGAAGCAAGAGCCTCCTATAATTCAGAACAGCCCAACTGTAAAGGTGAATGATATGCATGGAATTGTTTCTACTGGGAATGTTGCCTCTACTGTTGAGAAGAATCCAACTGAAGTTAGAAATGCAATCCTTTTGCACCAAAGACTCCTCCAAGATCAGCAACAGGCTTCTACTACATCTGGGTTCAATTCTTTAGCAAAGCAG : AATGCAGATTTCCTTTCATTGTCA</gDNA_template>
            <first_frame> K  Q  S  N  *  S  F  S  C  E  I  L  R  E  S  G  N  Q  K  P  K  A  S  V  F  P  F  V  K  Q  K  Y  S  Q  I  A  K  S  L  L  F  G :   L  *  G  R  K  *  N  N  C  E  E  I  E  E  R  G  R  K  I  E  W  C  W  *  S  L  V  Q  Y  E  Q  H  *  N  G  L  F  K  V  *  *  *  R  *  D  S  F  Q  C  F  C  S  E  A  I  *  V  S  Q  K   : V  F  *  *  V  *  W  S  R  S  C  F  C  S  S  E  S  S  F  S :   Y  Q  E  E  N  S  Q  A  H  L  S  T  F  A  D  F  Q  K  G  E  S  H  V  R  W  S  *  N  T  K  E  I  W  Q  Q  V  *  A  *  F   : D  S  L  W  F  K  S  V  Y  K  G  G  A  *  L  S  N  H  Q  R  *  R  G  S  G  *  N  L  V  C  F  G  W  Y  D  P  R  C  *  H  L  E  R  K  Q  N  K  *  S  T  S  *  S  E  I  F  G  L  T  R  T  *  G  F  C  N  R  K  W  S :   C  N  N  R  T  G  H  K  D  K  Q  L  P  I  Q  C  *  S  F  E  A  V  S  R  H  S  C  F  C  W  R  S  C  Q  I  K  I  I  S  *  C  F  P  V  *  Y  I  H  Q  H  R  A  A  R  N  F  I  A  T   : S  C  C  L  S  S  Q  Q  T  K  H  T  Q  G  E  *  E  *  W :   F  I  V  V  A  R  L  V  C  S  R  V  I  L  F  R  H  T  *  F  F  T  T  :  V  S  N  W  Q  I  S  C  L  D  R  E  R  W  H  *  S  S  S  S  K  C  K  I  L  S  T  N  H  E   : G  F  S  S  S  T  *  V  E  E  V  I  *  E  V  C  C  S  C  L  Y  K  S  A  D  *  G  L  T  D  F  D  E  R  *  H  S  L  L  A  S  F  S  V  L  T  S  *  W  S  E  A  R  A  S  Y  N  S  E  Q  P  N  C  K  G  E  *  Y  A  W  N  C  F  Y  W  E  C  C  L  Y  C  *  E  E  S  N  *  S  *  K  C  N  P  F  A  P  K  T  P  P  R  S  A  T  G  F  Y  Y  I  W  V  Q  F  F  S  K  A   : E  C  R  F  P  F  I  V  </first_frame>
            <second_frame>  N  R  V  T  D  R  F  R  V  K  S  *  E  N  R  V  I  K  N  R  K  L  R  F  F  R  L  L  S  R  N  I  L  R  *  L  N  R  Y  Y  L   : D  C  K  G  G  N  E  I  I  A  K  K  S  K  K  G  G  E  R  L  S  G  A  G  E  V  *  S  S  M  N  N  I  E  M  G  C  L  K  S  D  D  N  D  E  I  H  S  N  V  S  V  R  K  R  F  K  F  P  K  K  :  F  F  D  E  C  N  G  V  D  H  A  S  V  P  R  K  V  R  S   : V  I  K  K  R  I  R  K  L  I  S  P  P  L  P  I  S  K  K  A  N  R  M  S  D  G  A  E  T  L  R  K  Y  G  N  K  S  K  L  N  L  :  T  H  C  G  S  S  R  C  I  K  E  E  L  D  C  P  I  T  K  D  E  E  E  V  A  E  T  L  Y  A  L  A  G  M  I  P  D  V  D  T  L  S  E  S  K  I  N  S  Q  L  P  E  V  K  S  L  D  L  P  E  P  E  A  S  V  I  A  S  G   : V  V  T  T  E  Q  D  I  R  T  N  S  S  Q  F  S  A  E  A  L  K  Q  F  P  D  I  A  V  S  A  G  E  A  A  K  S  K  S  F  H  D  A  S  P  C  D  T  F  I  N  T  E  Q  L  E  I  S  S  Q  Q  :  V  V  A  Y  Q  A  N  K  Q  N  T  H  K  E  N  R  N  N   : G  S  L  L  W  P  G  L  S  A  A  G  S  S  C  S  D  I  L  D  S  S  P  Q :   F  P  I  G  K  F  P  V  W  I  G  S  A  G  T  D  H  Q  A  Q  N  A  K  S  C  L  P  T  M  K  :  D  S  Q  V  P  L  E  L  R  K  S  F  K  R  C  A  A  H  V  Y  I  S  R  L  T  K  G  L  Q  T  S  M  R  G  D  T  V  S  S  H  P  S  Q  S  S  P  P  D  G  V  K  Q  E  P  P  I  I  Q  N  S  P  T  V  K  V  N  D  M  H  G  I  V  S  T  G  N  V  A  S  T  V  E  K  N  P  T  E  V  R  N  A  I  L  L  H  Q  R  L  L  Q  D  Q  Q  Q  A  S  T  T  S  G  F  N  S  L  A  K  Q  :  N  A  D  F  L  S  L  S </second_frame>
            <third_frame>   T  E  *  L  I  V  F  V  *  N  L  E  R  I  G  *  S  K  T  E  S  F  G  F  S  V  C  *  A  E  I  F  S  D  S  *  I  V  T  I  W  :  I  V  R  E  E  M  K  *  L  R  R  N  R  R  K  G  E  K  D  *  V  V  L  V  K  F  S  P  V  *  T  T  L  K  W  V  V  *  S  L  M  I  T  M  R  F  I  P  M  F  L  F  G  S  D  L  S  F  P  K  S :   F  L  M  S  V  M  E  *  I  M  L  L  F  L  G  K  F  V  Q  :  L  S  R  R  E  F  A  S  S  S  L  H  L  C  R  F  P  K  R  R  I  A  C  Q  M  E  L  K  H  *  G  N  M  A  T  S  L  S  L  I  * :   L  I  V  V  Q  V  G  V  *  R  R  S  L  I  V  Q  S  P  K  M  K  R  K  W  L  K  P  C  M  L  W  L  V  *  S  Q  M  L  T  P  *  A  K  A  K  *  I  V  N  F  L  K  *  N  L  W  T  Y  Q  N  L  R  L  L  *  S  Q  V  E  :  L  *  Q  Q  N  R  T  *  G  Q  T  A  P  N  S  V  L  K  L  *  S  S  F  Q  T  *  L  F  L  L  E  K  L  P  N  Q  N  H  F  M  M  L  P  R  V  I  H  S  S  T  Q  S  S  *  K  F  H  R  N  K :   L  L  L  I  K  P  T  N  K  T  H  T  R  R  I  G  I  M  :  V  H  C  C  G  Q  A  C  L  Q  Q  G  H  L  V  P  T  Y  L  I  L  H  H   : S  F  Q  L  A  N  F  L  S  G  S  G  A  L  A  L  I  I  K  L  K  M  Q  N  L  V  Y  Q  P  *  R :   I  L  K  F  H  L  S  *  G  S  H  L  R  G  V  L  L  M  F  I  *  V  G  *  L  R  A  Y  R  L  R  *  E  V  T  Q  S  P  R  I  L  L  S  P  H  L  L  M  E  *  S  K  S  L  L  *  F  R  T  A  Q  L  *  R  *  M  I  C  M  E  L  F  L  L  G  M  L  P  L  L  L  R  R  I  Q  L  K  L  E  M  Q  S  F  C  T  K  D  S  S  K  I  S  N  R  L  L  L  H  L  G  S  I  L  *  Q  S  R :   M  Q  I  S  F  H  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89163" stop="89264"/>
                    <exon start="89345" stop="89402"/>
                    <exon start="89781" stop="89902"/>
                    <exon start="90036" stop="90243"/>
                    <exon start="90329" stop="90507"/>
                    <exon start="90583" stop="90637"/>
                    <exon start="90761" stop="90830"/>
                    <exon start="90907" stop="90997"/>
                    <exon start="91094" stop="91444"/>
                    <exon start="91513" stop="91536"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1260</number_coding_nucleotides>
                  <number_encoded_amino_acids>420</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSMNNIEMGCLKSDDNDEIHSNVSVRKRFKFPKKFFDECNGVDHASVPRKVRSVIKKRIRKLISPPLPISKKANRMSDGAETLRKYGNKSKLNLTHCGSSRCIKEELDCPITKDEEEVAETLYALAGMIPDVDTLSESKINSQLPEVKSLDLPEPEASVIASGVVTTEQDIRTNSSQFSAEALKQFPDIAVSAGEAAKSKSFHDASPCDTFINTEQLEISSQQVVAYQANKQNTHKENRNNGSLLWPGLSAAGSSCSDILDSSPQFPIGKFPVWIGSAGTDHQAQNAKSCLPTMKDSQVPLELRKSFKRCAAHVYISRLTKGLQTSMRGDTVSSHPSQSSPPDGVKQEPPIIQNSPTVKVNDMHGIVSTGNVASTVEKNPTEVRNAILLHQRLLQDQQQASTTSGFNSLAKQNADFLSLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="92377" PGL_stop="93060"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92377" e_stop="93060"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="92377" e_stop="93060" e_length="684"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92377" stop="93050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92871" stop="93060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227747" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTACAAGTTTGGTGGAGTCTCTACCTCACAAATGCGAGACTGGCAAAATGCAGGGCGACCAATGCCTATCTTTGGACCTTCTCAAGCTCAATTGGCAGCTTCTTCTTCCTCGATGGAAGCACTTTCTTCCAAGTATGTTCCACCCTTGTTGAACGAGCAGGAGCTTATGTCCATTTCTACGTCACGAACTAATTCAAGGATCAAAGGACAATATTACAGTTTCCCTTCTGGCTTGGAAGGAAGTGGACATGGACTCTACCCCAATAATGTGCCTTCATTGCAGCTTCTTTGCAATGATCGTCGTTAATACGGAGAGCCATGGCACCATGTCCATAATATCAGAGCGAAACTCCTGCAAATCATAATTGATTTATTCTTTTCTTTGCTTATGCATGAGAGTTGGTGTTCATTCTGTTACTGAATATAAGGAACACAAAAAAGGGAGGATATAGTAAATCTCATGTCCCTTATTAGATGCTTATTCTGTTTCAGTTTCAATTAATTATAGAGTAACAACTTCAGAAATGGTTGTTGGTTTTTCCCTAGATGGAAAGAAACTTTATGTGTCTGAGAAGGTTATTGACTTGTAGTATACACAAGAAGAAGAATGGCAATGAAAAAAATTGCAGCTGCTTTAAATTTCTTTCAGCAATTTTCAGGAAAATAAAGTGTTCTTTTATAC</gDNA_template>
            <first_frame> Q  Y  K  F  G  G  V  S  T  S  Q  M  R  D  W  Q  N  A  G  R  P  M  P  I  F  G  P  S  Q  A  Q  L  A  A  S  S  S  S  M  E  A  L  S  S  K  Y  V  P  P  L  L  N  E  Q  E  L  M  S  I  S  T  S  R  T  N  S  R  I  K  G  Q  Y  Y  S  F  P  S  G  L  E  G  S  G  H  G  L  Y  P  N  N  V  P  S  L  Q  L  L  C  N  D  R  R  *  Y  G  E  P  W  H  H  V  H  N  I  R  A  K  L  L  Q  I  I  I  D  L  F  F  S  L  L  M  H  E  S  W  C  S  F  C  Y  *  I  *  G  T  Q  K  R  E  D  I  V  N  L  M  S  L  I  R  C  L  F  C  F  S  F  N  *  L  *  S  N  N  F  R  N  G  C  W  F  F  P  R  W  K  E  T  L  C  V  *  E  G  Y  *  L  V  V  Y  T  R  R  R  M  A  M  K  K  I  A  A  A  L  N  F  F  Q  Q  F  S  G  K  *  S  V  L  L  Y </first_frame>
            <second_frame>  S  T  S  L  V  E  S  L  P  H  K  C  E  T  G  K  M  Q  G  D  Q  C  L  S  L  D  L  L  K  L  N  W  Q  L  L  L  P  R  W  K  H  F  L  P  S  M  F  H  P  C  *  T  S  R  S  L  C  P  F  L  R  H  E  L  I  Q  G  S  K  D  N  I  T  V  S  L  L  A  W  K  E  V  D  M  D  S  T  P  I  M  C  L  H  C  S  F  F  A  M  I  V  V  N  T  E  S  H  G  T  M  S  I  I  S  E  R  N  S  C  K  S  *  L  I  Y  S  F  L  C  L  C  M  R  V  G  V  H  S  V  T  E  Y  K  E  H  K  K  G  R  I  *  *  I  S  C  P  L  L  D  A  Y  S  V  S  V  S  I  N  Y  R  V  T  T  S  E  M  V  V  G  F  S  L  D  G  K  K  L  Y  V  S  E  K  V  I  D  L  *  Y  T  Q  E  E  E  W  Q  *  K  K  L  Q  L  L  *  I  S  F  S  N  F  Q  E  N  K  V  F  F  Y   </second_frame>
            <third_frame>   V  Q  V  W  W  S  L  Y  L  T  N  A  R  L  A  K  C  R  A  T  N  A  Y  L  W  T  F  S  S  S  I  G  S  F  F  F  L  D  G  S  T  F  F  Q  V  C  S  T  L  V  E  R  A  G  A  Y  V  H  F  Y  V  T  N  *  F  K  D  Q  R  T  I  L  Q  F  P  F  W  L  G  R  K  W  T  W  T  L  P  Q  *  C  A  F  I  A  A  S  L  Q  *  S  S  L  I  R  R  A  M  A  P  C  P  *  Y  Q  S  E  T  P  A  N  H  N  *  F  I  L  F  F  A  Y  A  *  E  L  V  F  I  L  L  L  N  I  R  N  T  K  K  G  G  Y  S  K  S  H  V  P  Y  *  M  L  I  L  F  Q  F  Q  L  I  I  E  *  Q  L  Q  K  W  L  L  V  F  P  *  M  E  R  N  F  M  C  L  R  R  L  L  T  C  S  I  H  K  K  K  N  G  N  E  K  N  C  S  C  F  K  F  L  S  A  I  F  R  K  I  K  C  S  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92377" stop="92685"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYKFGGVSTSQMRDWQNAGRPMPIFGPSQAQLAASSSSMEALSSKYVPPLLNEQELMSISTSRTNSRIKGQYYSFPSGLEGSGHGLYPNNVPSLQLLCNDRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="96676" PGL_stop="93468"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96676" e_stop="96556"/>
            <exon e_start="96409" e_stop="96311"/>
            <exon e_start="96228" e_stop="96178"/>
            <exon e_start="94874" e_stop="94701"/>
            <exon e_start="94398" e_stop="94339"/>
            <exon e_start="93810" e_stop="93468"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.658" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96676" e_stop="96556" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.799">
            <gDNA_intron_boundary i_start="96555" i_stop="96410" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96409" e_stop="96311" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.993">
            <gDNA_intron_boundary i_start="96310" i_stop="96229" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96228" e_stop="96178" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.658">
            <gDNA_intron_boundary i_start="96177" i_stop="94875" i_length="1303"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94874" e_stop="94701" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="0.997">
            <gDNA_intron_boundary i_start="94700" i_stop="94399" i_length="302"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94398" e_stop="94339" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.713" acc_prob="0.993">
            <gDNA_intron_boundary i_start="94338" i_stop="93811" i_length="528"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="93810" e_stop="93468" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96676" stop="96556"/>
              <exon start="96409" stop="96311"/>
              <exon start="96228" stop="96178"/>
              <exon start="94874" stop="94701"/>
              <exon start="94398" stop="94339"/>
              <exon start="93810" stop="93780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96609" stop="96556"/>
              <exon start="96409" stop="96311"/>
              <exon start="96228" stop="96178"/>
              <exon start="94874" stop="94701"/>
              <exon start="94398" stop="94339"/>
              <exon start="93810" stop="93541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96609" stop="96556"/>
              <exon start="96409" stop="96311"/>
              <exon start="96228" stop="96178"/>
              <exon start="94874" stop="94701"/>
              <exon start="94398" stop="94339"/>
              <exon start="93810" stop="93696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96575" stop="96556"/>
              <exon start="96409" stop="96311"/>
              <exon start="96228" stop="96178"/>
              <exon start="94874" stop="94701"/>
              <exon start="94398" stop="94339"/>
              <exon start="93810" stop="93595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96569" stop="96556"/>
              <exon start="96409" stop="96311"/>
              <exon start="96228" stop="96178"/>
              <exon start="94874" stop="94701"/>
              <exon start="94398" stop="94339"/>
              <exon start="93810" stop="93595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96567" stop="96556"/>
              <exon start="96409" stop="96311"/>
              <exon start="96228" stop="96178"/>
              <exon start="94874" stop="94701"/>
              <exon start="94398" stop="94339"/>
              <exon start="93810" stop="93637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96566" stop="96556"/>
              <exon start="96409" stop="96311"/>
              <exon start="96228" stop="96178"/>
              <exon start="94874" stop="94701"/>
              <exon start="94398" stop="94339"/>
              <exon start="93810" stop="93468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96566" stop="96556"/>
              <exon start="96409" stop="96311"/>
              <exon start="96228" stop="96178"/>
              <exon start="94874" stop="94841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93685" stop="93541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATG : ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG : GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG : TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG : GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG : GCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAGAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATACGAA</gDNA_template>
            <first_frame> S  L  A  P  Q  L  *  P  *  G  L  F  A  G  F  Y  K  L  K  N  Q  R  D  F  F  N  C  F  Y  S  C  F  A  C  R  S  S  E  Q  N   : D  P  F  Y  I  A  S  E  Q  A  R  K  D  S  F  G  *  V  L  Y  T  S  *  G  I  R  E  A  Q  G  G  I  *   : G  S  *  V  G  C  E  *  R  S  Q  I  H  Q  L  C  *   : V  P  Y  S  Q  G  N  I  Q  K  I  C  R  I  I  F  L  T  L  C  *  Y  H  R  Q  R  V  G  L  F  R  V  H  P  L  V  C  G  D  F  G  S  L  L  Q  Q  C  L  *  A  G  F  G  F  Q  F  P  Q   : G  I  S  D  I  R  *  V  Y  S  C  W  G  A  P  G  N  K  *  E   : G  N  H  R  E  N  G  R  V  G  E  A  G  V  K  N  S  D  A  L  L  K  S  Q  N  K  H  L  P  F  P  S  S  P  A  L  L  F  R  L  A  V  F  T  A  L  D  I  L  Y  P  V  D  T  F  M  L  M  W  P  H  L  I  Q  D  L  F  I  H  T  F  K  G  S  L  Q  V  *  I  *  M  S  L  S  I  P  S  L  N  M  N  I  F  I  F  C  *  L  Q  K  L  Y  C  C  W  K  *  E  K  G  Y  F  N  T   </first_frame>
            <second_frame>  L  W  H  L  S  C  D  P  E  G  F  L  L  V  F  T  N  *  R  I  K  E  I  F  S  I  V  S  T  A  V  L  P  A  D  L  L  N  K  M  :  I  R  F  I  L  L  Q  N  R  Q  G  K  T  R  L  A  K  Y  Y  I  P  L  E  E  S  E  K  H  K  V  E  Y  E  :  V  H  R  L  V  V  N  R  D  P  K  F  T  N  F  V  E  :  F  R  T  H  K  V  I  Y  R  R  Y  A  G  L  F  F  S  L  C  V  D  I  T  D  N  E  L  A  Y  L  E  S  I  H  L  F  V  E  I  L  D  H  F  F  S  N  V  C  E  L  D  L  V  F  N  F  H  K  :  V  Y  L  I  L  D  E  F  I  L  A  G  E  L  Q  E  T  S  K  R  :  A  I  I  E  R  M  G  E  L  E  K  Q  E  *  R  T  P  M  L  C  S  R  V  K  T  N  T  C  L  F  L  H  H  L  H  F  S  S  G  W  L  Y  L  L  H  *  T  F  C  I  P  L  I  P  S  C  *  C  G  L  I  *  Y  K  I  C  S  F  I  H  L  K  V  V  C  K  F  K  Y  E  C  L  Y  L  F  P  V  *  I  *  I  S  L  S  F  V  N  S  R  N  Y  I  V  V  G  S  R  K  R  V  I  S  I  R  </second_frame>
            <third_frame>   S  G  T  S  V  V  T  L  R  A  F  C  W  F  L  Q  I  K  E  S  K  R  F  F  Q  L  F  L  Q  L  F  C  L  Q  I  F  *  T  K  * :   S  V  L  Y  C  F  R  T  G  K  E  R  L  V  W  L  S  I  I  Y  L  L  R  N  P  R  S  T  R  W  N  M  R :   F  I  G  W  L  *  I  E  I  P  N  S  P  T  L  L  S :   S  V  L  T  R  *  Y  T  E  D  M  Q  D  Y  F  S  H  F  V  L  I  S  Q  T  T  S  W  L  I  *  S  P  S  T  C  L  W  R  F  W  I  T  S  S  A  M  S  V  S  W  I  W  F  S  I  S  T  R :   Y  I  *  Y  *  M  S  L  F  L  L  G  S  S  R  K  Q  V  R  G :   Q  S  S  R  E  W  E  S  W  R  S  R  S  E  E  L  R  C  F  A  Q  E  S  K  Q  T  L  A  F  S  F  I  T  C  T  S  L  P  A  G  C  I  Y  C  I  R  H  S  V  S  R  *  Y  L  H  V  D  V  A  S  F  N  T  R  F  V  H  S  Y  I  *  R  *  F  A  S  L  N  M  N  V  S  I  Y  S  Q  F  K  Y  E  Y  L  Y  L  L  L  T  P  E  T  I  L  L  L  E  V  G  K  G  L  F  Q  Y  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96621" stop="96556"/>
                    <exon start="96409" stop="96311"/>
                    <exon start="96228" stop="96178"/>
                    <exon start="94874" stop="94701"/>
                    <exon start="94398" stop="94339"/>
                    <exon start="93810" stop="93769"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIKEIFSIVSTAVLPADLLNKMIRFILLQNRQGKTRLAKYYIPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96676" e_stop="96556"/>
            <exon e_start="96409" e_stop="96311"/>
            <exon e_start="96228" e_stop="96178"/>
            <exon e_start="94874" e_stop="94701"/>
            <exon e_start="94398" e_stop="94339"/>
            <exon e_start="93810" e_stop="93595"/>
            <exon e_start="93514" e_stop="93507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.658" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.653" acc_prob="0.614" e_score="0.995"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96676" e_stop="96556" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.799">
            <gDNA_intron_boundary i_start="96555" i_stop="96410" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96409" e_stop="96311" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.993">
            <gDNA_intron_boundary i_start="96310" i_stop="96229" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96228" e_stop="96178" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.658">
            <gDNA_intron_boundary i_start="96177" i_stop="94875" i_length="1303"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94874" e_stop="94701" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="0.997">
            <gDNA_intron_boundary i_start="94700" i_stop="94399" i_length="302"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94398" e_stop="94339" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.713" acc_prob="0.993">
            <gDNA_intron_boundary i_start="94338" i_stop="93811" i_length="528"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="93810" e_stop="93595" e_length="216"/>
          </exon>
          <intron i_serial="6" don_prob="0.653" acc_prob="0.614">
            <gDNA_intron_boundary i_start="93594" i_stop="93515" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="0.625">
            <gDNA_exon_boundary e_start="93514" e_stop="93507" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96676" stop="96556"/>
              <exon start="96409" stop="96311"/>
              <exon start="96228" stop="96178"/>
              <exon start="94874" stop="94701"/>
              <exon start="94398" stop="94339"/>
              <exon start="93810" stop="93780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96654" stop="96556"/>
              <exon start="96409" stop="96311"/>
              <exon start="96228" stop="96178"/>
              <exon start="94874" stop="94701"/>
              <exon start="94398" stop="94339"/>
              <exon start="93810" stop="93595"/>
              <exon start="93514" stop="93507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96609" stop="96556"/>
              <exon start="96409" stop="96311"/>
              <exon start="96228" stop="96178"/>
              <exon start="94874" stop="94701"/>
              <exon start="94398" stop="94339"/>
              <exon start="93810" stop="93696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96575" stop="96556"/>
              <exon start="96409" stop="96311"/>
              <exon start="96228" stop="96178"/>
              <exon start="94874" stop="94701"/>
              <exon start="94398" stop="94339"/>
              <exon start="93810" stop="93595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96569" stop="96556"/>
              <exon start="96409" stop="96311"/>
              <exon start="96228" stop="96178"/>
              <exon start="94874" stop="94701"/>
              <exon start="94398" stop="94339"/>
              <exon start="93810" stop="93595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96567" stop="96556"/>
              <exon start="96409" stop="96311"/>
              <exon start="96228" stop="96178"/>
              <exon start="94874" stop="94701"/>
              <exon start="94398" stop="94339"/>
              <exon start="93810" stop="93637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96566" stop="96556"/>
              <exon start="96409" stop="96311"/>
              <exon start="96228" stop="96178"/>
              <exon start="94874" stop="94841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204176" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATG : ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG : GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG : TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG : GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG : GCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAG : AAACTATA</gDNA_template>
            <first_frame> S  L  A  P  Q  L  *  P  *  G  L  F  A  G  F  Y  K  L  K  N  Q  R  D  F  F  N  C  F  Y  S  C  F  A  C  R  S  S  E  Q  N   : D  P  F  Y  I  A  S  E  Q  A  R  K  D  S  F  G  *  V  L  Y  T  S  *  G  I  R  E  A  Q  G  G  I  *   : G  S  *  V  G  C  E  *  R  S  Q  I  H  Q  L  C  *   : V  P  Y  S  Q  G  N  I  Q  K  I  C  R  I  I  F  L  T  L  C  *  Y  H  R  Q  R  V  G  L  F  R  V  H  P  L  V  C  G  D  F  G  S  L  L  Q  Q  C  L  *  A  G  F  G  F  Q  F  P  Q   : G  I  S  D  I  R  *  V  Y  S  C  W  G  A  P  G  N  K  *  E   : G  N  H  R  E  N  G  R  V  G  E  A  G  V  K  N  S  D  A  L  L  K  S  Q  N  K  H  L  P  F  P  S  S  P  A  L  L  F  R  L  A  V  F  T  A  L  D  I  L  Y  P  V  D  T  F  M  L  M  W  P  H  L  I  Q  D  L  F  I  H  T  F  K   : E  T  I </first_frame>
            <second_frame>  L  W  H  L  S  C  D  P  E  G  F  L  L  V  F  T  N  *  R  I  K  E  I  F  S  I  V  S  T  A  V  L  P  A  D  L  L  N  K  M  :  I  R  F  I  L  L  Q  N  R  Q  G  K  T  R  L  A  K  Y  Y  I  P  L  E  E  S  E  K  H  K  V  E  Y  E  :  V  H  R  L  V  V  N  R  D  P  K  F  T  N  F  V  E  :  F  R  T  H  K  V  I  Y  R  R  Y  A  G  L  F  F  S  L  C  V  D  I  T  D  N  E  L  A  Y  L  E  S  I  H  L  F  V  E  I  L  D  H  F  F  S  N  V  C  E  L  D  L  V  F  N  F  H  K  :  V  Y  L  I  L  D  E  F  I  L  A  G  E  L  Q  E  T  S  K  R  :  A  I  I  E  R  M  G  E  L  E  K  Q  E  *  R  T  P  M  L  C  S  R  V  K  T  N  T  C  L  F  L  H  H  L  H  F  S  S  G  W  L  Y  L  L  H  *  T  F  C  I  P  L  I  P  S  C  *  C  G  L  I  *  Y  K  I  C  S  F  I  H  L  K  :  K  L   </second_frame>
            <third_frame>   S  G  T  S  V  V  T  L  R  A  F  C  W  F  L  Q  I  K  E  S  K  R  F  F  Q  L  F  L  Q  L  F  C  L  Q  I  F  *  T  K  * :   S  V  L  Y  C  F  R  T  G  K  E  R  L  V  W  L  S  I  I  Y  L  L  R  N  P  R  S  T  R  W  N  M  R :   F  I  G  W  L  *  I  E  I  P  N  S  P  T  L  L  S :   S  V  L  T  R  *  Y  T  E  D  M  Q  D  Y  F  S  H  F  V  L  I  S  Q  T  T  S  W  L  I  *  S  P  S  T  C  L  W  R  F  W  I  T  S  S  A  M  S  V  S  W  I  W  F  S  I  S  T  R :   Y  I  *  Y  *  M  S  L  F  L  L  G  S  S  R  K  Q  V  R  G :   Q  S  S  R  E  W  E  S  W  R  S  R  S  E  E  L  R  C  F  A  Q  E  S  K  Q  T  L  A  F  S  F  I  T  C  T  S  L  P  A  G  C  I  Y  C  I  R  H  S  V  S  R  *  Y  L  H  V  D  V  A  S  F  N  T  R  F  V  H  S  Y  I  *  R :   N  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96621" stop="96556"/>
                    <exon start="96409" stop="96311"/>
                    <exon start="96228" stop="96178"/>
                    <exon start="94874" stop="94701"/>
                    <exon start="94398" stop="94339"/>
                    <exon start="93810" stop="93769"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIKEIFSIVSTAVLPADLLNKMIRFILLQNRQGKTRLAKYYIPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="96056" e_stop="95150"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="96056" e_stop="95150" e_length="907"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96056" stop="95577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95825" stop="95150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95825" stop="95226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95824" stop="95539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATA</gDNA_template>
            <first_frame> K  M  *  L  S  V  L  F  S  I  Y  R  T  P  Y  *  A  N  L  L  Q  L  C  *  G  K  G  F  S  F  A  S  L  *  F  S  K  S  S  N  V  *  L  S  Y  T  V  R  G  *  C  P  L  G  G  E  L  F  C  F  P  S  T  L  R  L  H  I  I  M  T  F  H  I  I  G  E  V  I  S  R  W  F  I  V  F  I  Y  H  C  I  I  N  T  C  S  V  G  I  K  G  I  T  L  *  N  D  *  R  I  G  S  G  G  G  F  K  I  L  F  K  I  *  F  L  C  R  V  T  Y  V  M  A  *  Y  E  I  L  I  E  T  F  L  R  T  Y  M  L  F  P  N  S  V  S  W  L  *  K  I  *  R  L  E  E  S  G  R  V  E  G  G  K  D  Q  E  R  R  A  I  S  L  L  L  V  H  D  *  R  I  Y  L  E  S  Y  T  D  Y  F  L  C  I  I  L  A  S  I  L  V  *  Y  S  W  I  *  F  L  K  E  S  K  N  V  N  L  Q  K  E  T  K  E  A  L  C  F  N  F  V  G  *  S  F  L  M  R  C  F  V  K  Y  N  I  L  F  K  S  P  R  *  H  K  V  Q  S  K  I  S  D  R  S  S  F  F  L  S  K  *  F  I  L  G  A  V  R  G  K  V  K  Q  R  K  R  E  K  T  S  L  R  F  E  L  V  Y  </first_frame>
            <second_frame>  K  C  D  Y  L  S  C  F  R  S  I  E  H  H  T  K  R  I  C  Y  N  C  A  K  A  K  G  S  L  S  L  A  F  N  F  L  K  V  V  M  F  N  Y  L  I  L  *  E  D  D  V  L  L  V  E  N  Y  F  A  F  P  L  R  Y  A  C  T  L  S  *  H  F  T  L  L  V  K  *  Y  Q  D  G  L  S  Y  L  S  T  I  A  S  *  I  L  V  P  L  V  S  K  E  *  L  C  E  M  I  E  G  *  G  V  V  G  D  S  R  Y  C  S  K  F  N  F  C  V  E  *  P  M  L  W  L  S  M  K  F  L  L  R  H  F  S  V  P  T  C  C  F  L  I  Q  Y  L  G  F  R  K  F  R  G  W  K  R  V  G  E  W  R  E  G  R  I  K  K  E  E  P  F  P  F  C  L  C  M  I  R  G  F  I  *  N  H  I  Q  T  T  F  Y  A  S  F  *  L  Q  Y  W  C  N  I  P  G  S  D  F  L  K  N  Q  K  M  L  T  C  K  R  K  Q  K  K  H  C  V  L  T  L  L  G  N  P  F  S  *  D  A  S  *  S  I  T  Y  Y  L  K  V  L  D  D  I  K  Y  K  A  R  Y  R  T  E  A  L  F  S  *  V  S  D  L  S  L  E  L  *  G  G  R  *  S  K  G  R  E  R  K  Q  V  *  G  L  N  L  C  I </second_frame>
            <third_frame>   N  V  I  I  C  L  V  F  D  L  *  N  T  I  L  S  E  F  A  T  I  V  L  R  Q  R  V  L  F  R  *  P  L  I  F  *  K  *  *  C  L  T  I  L  Y  C  E  R  M  M  S  S  W  W  R  T  I  L  L  S  L  Y  A  T  P  A  H  Y  H  D  I  S  H  Y  W  *  S  N  I  K  M  V  Y  R  I  Y  L  P  L  H  H  K  Y  L  F  R  W  Y  Q  R  N  N  F  V  K  *  L  K  D  R  E  W  W  G  I  Q  D  I  V  Q  N  L  I  S  V  *  S  N  L  C  Y  G  L  V  *  N  S  Y  *  D  I  S  P  Y  L  H  V  V  S  *  F  S  I  L  A  L  E  N  L  E  V  G  R  E  W  E  S  G  G  R  E  G  S  R  K  K  S  H  F  P  F  A  C  A  *  L  E  D  L  F  R  I  I  Y  R  L  L  F  M  H  H  S  S  F  N  I  G  V  I  F  L  D  L  I  S  *  R  I  K  K  C  *  P  A  K  G  N  K  R  S  I  V  F  *  L  C  W  V  I  L  S  H  E  M  L  R  E  V  *  H  T  I  *  K  S  S  M  T  *  S  T  K  Q  D  I  G  Q  K  L  F  F  P  K  *  V  I  Y  P  W  S  C  K  G  E  G  K  A  K  E  E  R  E  N  K  F  E  V  *  T  C  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0101P06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="104019" PGL_stop="99869"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104019" e_stop="103440"/>
            <exon e_start="102829" e_stop="102679"/>
            <exon e_start="102593" e_stop="102411"/>
            <exon e_start="101847" e_stop="101773"/>
            <exon e_start="101674" e_stop="101519"/>
            <exon e_start="101432" e_stop="101337"/>
            <exon e_start="101234" e_stop="101101"/>
            <exon e_start="101005" e_stop="100924"/>
            <exon e_start="100519" e_stop="99869"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="0.964"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.818" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.828" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.982" e_score="0.993"/>
          <exon-intron don_prob="0.997" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.865"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="104019" e_stop="103440" e_length="580"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="103439" i_stop="102830" i_length="610"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102829" e_stop="102679" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="102678" i_stop="102594" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102593" e_stop="102411" e_length="183"/>
          </exon>
          <intron i_serial="3" don_prob="0.818" acc_prob="0.995">
            <gDNA_intron_boundary i_start="102410" i_stop="101848" i_length="563"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101847" e_stop="101773" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.929">
            <gDNA_intron_boundary i_start="101772" i_stop="101675" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="101674" e_stop="101519" e_length="156"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="0.828">
            <gDNA_intron_boundary i_start="101518" i_stop="101433" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="101432" e_stop="101337" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.877">
            <gDNA_intron_boundary i_start="101336" i_stop="101235" i_length="102"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="101234" e_stop="101101" e_length="134"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.982">
            <gDNA_intron_boundary i_start="101100" i_stop="101006" i_length="95"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="101005" e_stop="100924" e_length="82"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.980">
            <gDNA_intron_boundary i_start="100923" i_stop="100520" i_length="404"/>
          </intron>
          <exon e_serial="9" e_score="0.865">
            <gDNA_exon_boundary e_start="100519" e_stop="99869" e_length="651"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104019" stop="103440"/>
              <exon start="102829" stop="102679"/>
              <exon start="102593" stop="102583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103803" stop="103440"/>
              <exon start="102829" stop="102679"/>
              <exon start="102593" stop="102558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103783" stop="103440"/>
              <exon start="102829" stop="102802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103779" stop="103440"/>
              <exon start="102829" stop="102679"/>
              <exon start="102593" stop="102411"/>
              <exon start="101847" stop="101773"/>
              <exon start="101674" stop="101519"/>
              <exon start="101432" stop="101337"/>
              <exon start="101234" stop="101101"/>
              <exon start="101005" stop="100924"/>
              <exon start="100519" stop="99869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103779" stop="103440"/>
              <exon start="102829" stop="102679"/>
              <exon start="102593" stop="102411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103754" stop="103440"/>
              <exon start="102829" stop="102679"/>
              <exon start="102593" stop="102489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103742" stop="103440"/>
              <exon start="102829" stop="102679"/>
              <exon start="102593" stop="102411"/>
              <exon start="101847" stop="101773"/>
              <exon start="101674" stop="101519"/>
              <exon start="101432" stop="101337"/>
              <exon start="101234" stop="101101"/>
              <exon start="101005" stop="100924"/>
              <exon start="100519" stop="99935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103702" stop="103440"/>
              <exon start="102829" stop="102679"/>
              <exon start="102593" stop="102456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101367" stop="101337"/>
              <exon start="101234" stop="101101"/>
              <exon start="101005" stop="100924"/>
              <exon start="100519" stop="100115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101367" stop="101337"/>
              <exon start="101234" stop="101101"/>
              <exon start="101005" stop="100924"/>
              <exon start="100519" stop="100127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101367" stop="101337"/>
              <exon start="101234" stop="101101"/>
              <exon start="101005" stop="100924"/>
              <exon start="100519" stop="100210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458324" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAAAAGCTGTAATGCTCTCTGCTACGGTTTAGTTTCAGCACTATGAAAGTAACGAACAGTTTTATAGTTAGCCAAATTCTTATATTCTTTCATTAAATCCTCACATCATTATTTTATTGAAATTCAACTGTTTTTCATCATTATTTTATTTGAAATTCAACTGTTCAAACAAACTTTTTTTTTTTTTCAAGTGTTAAAAGTTGAGATCTTCAAACACTCTGTTTCAACGTCACCATTTATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG : GAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAG : GAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACT : GCGGGAAAAGATGTTGTTGCTTGTCTGAATGAAGCCATGGAGAGGCGGGGAATGGATATGCAAGTGTCTGCCCTG : GTCAATGACACTGTGGGAACACTTGCCGGAGCAAGATACTGGGATGATGATGCCATGGTTGCTGTCATTCTTGGGACTGGAACCAATGCTTGCTATGTAGAACGTGTGGATGCTATTCCTAAGCTGGCAAAAAGGATGTCTAAGTCTCCAATAACG : ATTGTGAATACCGAATGGGGAGCTTTCTCAAATGGCCTTCCTTTAACTGAGTTTGATAGAGAAATGGATGCCGAGAGCATTAACCCTGGTGAGCAG : ATTTTTGAAAAGACCATCTCTGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGGCCAAGGTTGGGGGCTTATTTGGTAGCAGCTATGTTCCGGAAAAGCTAGTCACTCCATTTGTGCTGAG : GACACCTGATATATGTGCCATGCAGCAGGATACATCAATAGATCTTGAAGCTGTTGAGTCTGTCCTCTATGATGTAGCTGGG : GTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTAGCTGGTGCAGGAATTGTTGGTATATTACAGAAAATGGAGGAAGATTCTAAAGGTCTCATCTTTGGTAAAAGAACAGTTGTAGCAATGGATGGAGGCTTATATGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGCTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGATCTGGTATTGGAGCTGCATTATTAGCTGCTGCAAATTCAAAGTATGAACATGATGATTAAGGGAAAAGCTAAATTTCATGTGTTCAAAGGTTTGCTTGAGGAAAAATACATGAGCATTTGTAATTTAGAATGTTCTAAAGAAGGATTGATGATTGGATTTATAGAGGCTCTTGTTTGTGATGCCATTTTTTGTACTCCCATTAATGAAGTACGAAGAAGTGAGGATTTATATAGCCAACCCCAATTTATTTGGAATCGAGGCGTAGTTGTAATTGTATTATATGCAGCACTGACTTATTTATGTGATAAAAAGCACATGTATCAGTAAATATAGAACATCTTGTTTGTTTTGTAATTGTGAAATAAGCACAA</gDNA_template>
            <first_frame> Q  K  S  C  N  A  L  C  Y  G  L  V  S  A  L  *  K  *  R  T  V  L  *  L  A  K  F  L  Y  S  F  I  K  S  S  H  H  Y  F  I  E  I  Q  L  F  F  I  I  I  L  F  E  I  Q  L  F  K  Q  T  F  F  F  F  Q  V  L  K  V  E  I  F  K  H  S  V  S  T  S  P  F  I  V  S  L  F  F  S  V  T  Q  L  N  *  S  H  C  Y  L  K  C  R  S  P  L  A  R  R  P  S  D  P  S  M  F  H  D  H  L  I  K  R  S  L  G  H  V  S  L  Y  L  P  S  D  L  L  T  A  *  E  *  H  Q  F  *  R  S  C  R  K  I  V  L  L  L  F  Q  F  C  A  T  W  R  M  Q  W  P  M  I  *  G  P  G  L  P  S  T  A  A  V  I  *  R  *  S  L  V  M  S  T  L  Y  Q  L   : G  M  R  K  A  C  F  M  R  W  T  L  V  V  Q  I  S  G  C  *  G  C  S  *  V  V  K  K  S  V  *  S  P  L  S  L  S  K  S  L  Y  P  K  N  *  C  L  L  P  P  R :   S  F  S  I  S  *  L  L  R  *  E  N  L  H  K  R  K  V  V  I  L  S  C  N  R  D  G  Q  G  K  *  D  S  R  F  L  F  R  *  N  R  L  Q  *  E  L  E  S  *  S  N  G  Q  K  V  L  L  S  L  E  L :   R  E  K  M  L  L  L  V  *  M  K  P  W  R  G  G  E  W  I  C  K  C  L  P  W :   S  M  T  L  W  E  H  L  P  E  Q  D  T  G  M  M  M  P  W  L  L  S  F  L  G  L  E  P  M  L  A  M  *  N  V  W  M  L  F  L  S  W  Q  K  G  C  L  S  L  Q  *  R :   L  *  I  P  N  G  E  L  S  Q  M  A  F  L  *  L  S  L  I  E  K  W  M  P  R  A  L  T  L  V  S  R :   F  L  K  R  P  S  L  V  C  T  L  G  K  L  *  D  G  C  W  S  K  W  P  R  L  G  A  Y  L  V  A  A  M  F  R  K  S  *  S  L  H  L  C  *   : G  H  L  I  Y  V  P  C  S  R  I  H  Q  *  I  L  K  L  L  S  L  S  S  M  M  *  L  G :   *  N  P  I  *  V  Q  G  K  Q  S  W  T  F  A  I  L  L  Q  N  E  G  V  V  *  L  V  Q  E  L  L  V  Y  Y  R  K  W  R  K  I  L  K  V  S  S  L  V  K  E  Q  L  *  Q  W  M  E  A  Y  M  S  T  I  L  S  T  E  D  T  S  K  K  L  S  Q  S  Y  *  A  R  K  F  R  K  M  *  *  *  N  I  Q  K  M  D  L  V  L  E  L  H  Y  *  L  L  Q  I  Q  S  M  N  M  M  I  K  G  K  A  K  F  H  V  F  K  G  L  L  E  E  K  Y  M  S  I  C  N  L  E  C  S  K  E  G  L  M  I  G  F  I  E  A  L  V  C  D  A  I  F  C  T  P  I  N  E  V  R  R  S  E  D  L  Y  S  Q  P  Q  F  I  W  N  R  G  V  V  V  I  V  L  Y  A  A  L  T  Y  L  C  D  K  K  H  M  Y  Q  *  I  *  N  I  L  F  V  L  *  L  *  N  K  H   </first_frame>
            <second_frame>  R  K  A  V  M  L  S  A  T  V  *  F  Q  H  Y  E  S  N  E  Q  F  Y  S  *  P  N  S  Y  I  L  S  L  N  P  H  I  I  I  L  L  K  F  N  C  F  S  S  L  F  Y  L  K  F  N  C  S  N  K  L  F  F  F  F  K  C  *  K  L  R  S  S  N  T  L  F  Q  R  H  H  L  L  S  L  F  F  S  P  S  H  N  *  I  D  L  T  V  T  *  N  V  G  H  R  *  L  A  G  R  P  I  L  P  C  F  T  I  T  S  *  N  D  L  *  A  T  C  H  Y  I  C  R  P  I  Y  *  Q  L  R  S  S  T  N  F  D  E  V  A  E  R  L  C  Y  S  S  S  S  F  A  P  R  G  G  C  N  G  R  *  Y  E  G  R  A  C  R  R  R  R  Q  *  S  E  D  D  P  *  L  C  R  H  S  T  N  W  :  E  *  E  R  L  V  L  C  V  G  P  W  W  Y  K  F  P  G  A  K  G  A  A  R  W  *  R  R  A  C  S  R  H  *  V  *  A  S  L  Y  T  P  R  T  D  V  C  Y  L  R   : G  A  F  R  F  H  S  F  C  A  R  K  I  C  T  K  G  R  W  *  F  *  V  A  T  G  T  D  K  G  N  R  I  H  V  F  F  S  G  E  T  D  F  N  K  N  W  N  P  N  Q  M  D  K  R  F  C  C  L  W  N   : C  G  K  R  C  C  C  L  S  E  *  S  H  G  E  A  G  N  G  Y  A  S  V  C  P   : G  Q  *  H  C  G  N  T  C  R  S  K  I  L  G  *  *  C  H  G  C  C  H  S  W  D  W  N  Q  C  L  L  C  R  T  C  G  C  Y  S  *  A  G  K  K  D  V  *  V  S  N  N   : D  C  E  Y  R  M  G  S  F  L  K  W  P  S  F  N  *  V  *  *  R  N  G  C  R  E  H  *  P  W  *  A   : D  F  *  K  D  H  L  W  Y  V  P  W  G  N  C  E  T  G  A  G  Q  N  G  Q  G  W  G  L  I  W  *  Q  L  C  S  G  K  A  S  H  S  I  C  A  E  :  D  T  *  Y  M  C  H  A  A  G  Y  I  N  R  S  *  S  C  *  V  C  P  L  *  C  S  W   : G  K  I  R  S  K  C  K  E  N  S  R  G  H  L  R  Y  Y  C  K  T  R  G  S  S  S  W  C  R  N  C  W  Y  I  T  E  N  G  G  R  F  *  R  S  H  L  W  *  K  N  S  C  S  N  G  W  R  L  I  *  A  L  S  S  V  Q  R  I  P  P  R  S  C  H  R  A  T  R  L  G  N  F  E  K  C  S  D  R  T  F  K  R  W  I  W  Y  W  S  C  I  I  S  C  C  K  F  K  V  *  T  *  *  L  R  E  K  L  N  F  M  C  S  K  V  C  L  R  K  N  T  *  A  F  V  I  *  N  V  L  K  K  D  *  *  L  D  L  *  R  L  L  F  V  M  P  F  F  V  L  P  L  M  K  Y  E  E  V  R  I  Y  I  A  N  P  N  L  F  G  I  E  A  *  L  *  L  Y  Y  M  Q  H  *  L  I  Y  V  I  K  S  T  C  I  S  K  Y  R  T  S  C  L  F  C  N  C  E  I  S  T  </second_frame>
            <third_frame>   E  K  L  *  C  S  L  L  R  F  S  F  S  T  M  K  V  T  N  S  F  I  V  S  Q  I  L  I  F  F  H  *  I  L  T  S  L  F  Y  *  N  S  T  V  F  H  H  Y  F  I  *  N  S  T  V  Q  T  N  F  F  F  F  S  S  V  K  S  *  D  L  Q  T  L  C  F  N  V  T  I  Y  C  L  S  F  F  L  R  H  T  I  E  L  I  S  L  L  P  K  M  S  V  T  V  S  S  P  A  V  R  S  F  H  V  S  R  S  P  H  K  T  I  S  R  P  R  V  I  I  S  A  V  R  S  T  D  S  L  G  V  A  P  I  L  T  K  L  Q  K  D  C  A  T  P  L  P  V  L  R  H  V  A  D  A  M  A  D  D  M  R  A  G  L  A  V  D  G  G  S  D  L  K  M  I  L  S  Y  V  D  T  L  P  T  G :   N  E  K  G  L  F  Y  A  L  D  L  G  G  T  N  F  R  V  L  R  V  Q  L  G  G  K  E  E  R  V  V  A  T  E  F  E  Q  V  S  I  P  Q  E  L  M  F  A  T  S  E  :  E  L  F  D  F  I  A  S  A  L  G  K  F  A  Q  K  E  G  G  N  F  E  L  Q  Q  G  R  T  R  E  I  G  F  T  F  S  F  P  V  K  Q  T  S  I  R  T  G  I  L  I  K  W  T  K  G  F  A  V  S  G  T  :  A  G  K  D  V  V  A  C  L  N  E  A  M  E  R  R  G  M  D  M  Q  V  S  A  L  :  V  N  D  T  V  G  T  L  A  G  A  R  Y  W  D  D  D  A  M  V  A  V  I  L  G  T  G  T  N  A  C  Y  V  E  R  V  D  A  I  P  K  L  A  K  R  M  S  K  S  P  I  T  :  I  V  N  T  E  W  G  A  F  S  N  G  L  P  L  T  E  F  D  R  E  M  D  A  E  S  I  N  P  G  E  Q  :  I  F  E  K  T  I  S  G  M  Y  L  G  E  I  V  R  R  V  L  V  K  M  A  K  V  G  G  L  F  G  S  S  Y  V  P  E  K  L  V  T  P  F  V  L  R :   T  P  D  I  C  A  M  Q  Q  D  T  S  I  D  L  E  A  V  E  S  V  L  Y  D  V  A  G  :  V  K  S  D  L  S  A  R  K  T  V  V  D  I  C  D  T  I  A  K  R  G  G  R  L  A  G  A  G  I  V  G  I  L  Q  K  M  E  E  D  S  K  G  L  I  F  G  K  R  T  V  V  A  M  D  G  G  L  Y  E  H  Y  P  Q  Y  R  G  Y  L  Q  E  A  V  T  E  L  L  G  S  E  I  S  K  N  V  V  I  E  H  S  K  D  G  S  G  I  G  A  A  L  L  A  A  A  N  S  K  Y  E  H  D  D  *  G  K  S  *  I  S  C  V  Q  R  F  A  *  G  K  I  H  E  H  L  *  F  R  M  F  *  R  R  I  D  D  W  I  Y  R  G  S  C  L  *  C  H  F  L  Y  S  H  *  *  S  T  K  K  *  G  F  I  *  P  T  P  I  Y  L  E  S  R  R  S  C  N  C  I  I  C  S  T  D  L  F  M  *  *  K  A  H  V  S  V  N  I  E  H  L  V  C  F  V  I  V  K  *  A  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103813" stop="103440"/>
                    <exon start="102829" stop="102679"/>
                    <exon start="102593" stop="102411"/>
                    <exon start="101847" stop="101773"/>
                    <exon start="101674" stop="101519"/>
                    <exon start="101432" stop="101337"/>
                    <exon start="101234" stop="101101"/>
                    <exon start="101005" stop="100924"/>
                    <exon start="100519" stop="100181"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1587</number_coding_nucleotides>
                  <number_encoded_amino_acids>529</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLQTLCFNVTIYCLSFFLRHTIELISLLPKMSVTVSSPAVRSFHVSRSPHKTISRPRVIISAVRSTDSLGVAPILTKLQKDCATPLPVLRHVADAMADDMRAGLAVDGGSDLKMILSYVDTLPTGNEKGLFYALDLGGTNFRVLRVQLGGKEERVVATEFEQVSIPQELMFATSEELFDFIASALGKFAQKEGGNFELQQGRTREIGFTFSFPVKQTSIRTGILIKWTKGFAVSGTAGKDVVACLNEAMERRGMDMQVSALVNDTVGTLAGARYWDDDAMVAVILGTGTNACYVERVDAIPKLAKRMSKSPITIVNTEWGAFSNGLPLTEFDREMDAESINPGEQIFEKTISGMYLGEIVRRVLVKMAKVGGLFGSSYVPEKLVTPFVLRTPDICAMQQDTSIDLEAVESVLYDVAGVKSDLSARKTVVDICDTIAKRGGRLAGAGIVGILQKMEEDSKGLIFGKRTVVAMDGGLYEHYPQYRGYLQEAVTELLGSEISKNVVIEHSKDGSGIGAALLAAANSKYEHDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="104019" e_stop="103440"/>
            <exon e_start="102829" e_stop="102679"/>
            <exon e_start="102593" e_stop="102410"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="0.964"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="0.993"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="104019" e_stop="103440" e_length="580"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="103439" i_stop="102830" i_length="610"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="102829" e_stop="102679" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="102678" i_stop="102594" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="102593" e_stop="102410" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104019" stop="103440"/>
              <exon start="102829" stop="102679"/>
              <exon start="102593" stop="102583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103803" stop="103440"/>
              <exon start="102829" stop="102679"/>
              <exon start="102593" stop="102558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103783" stop="103440"/>
              <exon start="102829" stop="102802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103779" stop="103440"/>
              <exon start="102829" stop="102679"/>
              <exon start="102593" stop="102411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103755" stop="103440"/>
              <exon start="102829" stop="102679"/>
              <exon start="102593" stop="102410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103754" stop="103440"/>
              <exon start="102829" stop="102679"/>
              <exon start="102593" stop="102489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103702" stop="103440"/>
              <exon start="102829" stop="102679"/>
              <exon start="102593" stop="102456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAAAAGCTGTAATGCTCTCTGCTACGGTTTAGTTTCAGCACTATGAAAGTAACGAACAGTTTTATAGTTAGCCAAATTCTTATATTCTTTCATTAAATCCTCACATCATTATTTTATTGAAATTCAACTGTTTTTCATCATTATTTTATTTGAAATTCAACTGTTCAAACAAACTTTTTTTTTTTTTCAAGTGTTAAAAGTTGAGATCTTCAAACACTCTGTTTCAACGTCACCATTTATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG : GAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAG : GAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACTG</gDNA_template>
            <first_frame> Q  K  S  C  N  A  L  C  Y  G  L  V  S  A  L  *  K  *  R  T  V  L  *  L  A  K  F  L  Y  S  F  I  K  S  S  H  H  Y  F  I  E  I  Q  L  F  F  I  I  I  L  F  E  I  Q  L  F  K  Q  T  F  F  F  F  Q  V  L  K  V  E  I  F  K  H  S  V  S  T  S  P  F  I  V  S  L  F  F  S  V  T  Q  L  N  *  S  H  C  Y  L  K  C  R  S  P  L  A  R  R  P  S  D  P  S  M  F  H  D  H  L  I  K  R  S  L  G  H  V  S  L  Y  L  P  S  D  L  L  T  A  *  E  *  H  Q  F  *  R  S  C  R  K  I  V  L  L  L  F  Q  F  C  A  T  W  R  M  Q  W  P  M  I  *  G  P  G  L  P  S  T  A  A  V  I  *  R  *  S  L  V  M  S  T  L  Y  Q  L   : G  M  R  K  A  C  F  M  R  W  T  L  V  V  Q  I  S  G  C  *  G  C  S  *  V  V  K  K  S  V  *  S  P  L  S  L  S  K  S  L  Y  P  K  N  *  C  L  L  P  P  R :   S  F  S  I  S  *  L  L  R  *  E  N  L  H  K  R  K  V  V  I  L  S  C  N  R  D  G  Q  G  K  *  D  S  R  F  L  F  R  *  N  R  L  Q  *  E  L  E  S  *  S  N  G  Q  K  V  L  L  S  L  E  L </first_frame>
            <second_frame>  R  K  A  V  M  L  S  A  T  V  *  F  Q  H  Y  E  S  N  E  Q  F  Y  S  *  P  N  S  Y  I  L  S  L  N  P  H  I  I  I  L  L  K  F  N  C  F  S  S  L  F  Y  L  K  F  N  C  S  N  K  L  F  F  F  F  K  C  *  K  L  R  S  S  N  T  L  F  Q  R  H  H  L  L  S  L  F  F  S  P  S  H  N  *  I  D  L  T  V  T  *  N  V  G  H  R  *  L  A  G  R  P  I  L  P  C  F  T  I  T  S  *  N  D  L  *  A  T  C  H  Y  I  C  R  P  I  Y  *  Q  L  R  S  S  T  N  F  D  E  V  A  E  R  L  C  Y  S  S  S  S  F  A  P  R  G  G  C  N  G  R  *  Y  E  G  R  A  C  R  R  R  R  Q  *  S  E  D  D  P  *  L  C  R  H  S  T  N  W  :  E  *  E  R  L  V  L  C  V  G  P  W  W  Y  K  F  P  G  A  K  G  A  A  R  W  *  R  R  A  C  S  R  H  *  V  *  A  S  L  Y  T  P  R  T  D  V  C  Y  L  R   : G  A  F  R  F  H  S  F  C  A  R  K  I  C  T  K  G  R  W  *  F  *  V  A  T  G  T  D  K  G  N  R  I  H  V  F  F  S  G  E  T  D  F  N  K  N  W  N  P  N  Q  M  D  K  R  F  C  C  L  W  N   </second_frame>
            <third_frame>   E  K  L  *  C  S  L  L  R  F  S  F  S  T  M  K  V  T  N  S  F  I  V  S  Q  I  L  I  F  F  H  *  I  L  T  S  L  F  Y  *  N  S  T  V  F  H  H  Y  F  I  *  N  S  T  V  Q  T  N  F  F  F  F  S  S  V  K  S  *  D  L  Q  T  L  C  F  N  V  T  I  Y  C  L  S  F  F  L  R  H  T  I  E  L  I  S  L  L  P  K  M  S  V  T  V  S  S  P  A  V  R  S  F  H  V  S  R  S  P  H  K  T  I  S  R  P  R  V  I  I  S  A  V  R  S  T  D  S  L  G  V  A  P  I  L  T  K  L  Q  K  D  C  A  T  P  L  P  V  L  R  H  V  A  D  A  M  A  D  D  M  R  A  G  L  A  V  D  G  G  S  D  L  K  M  I  L  S  Y  V  D  T  L  P  T  G :   N  E  K  G  L  F  Y  A  L  D  L  G  G  T  N  F  R  V  L  R  V  Q  L  G  G  K  E  E  R  V  V  A  T  E  F  E  Q  V  S  I  P  Q  E  L  M  F  A  T  S  E  :  E  L  F  D  F  I  A  S  A  L  G  K  F  A  Q  K  E  G  G  N  F  E  L  Q  Q  G  R  T  R  E  I  G  F  T  F  S  F  P  V  K  Q  T  S  I  R  T  G  I  L  I  K  W  T  K  G  F  A  V  S  G  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103813" stop="103440"/>
                    <exon start="102829" stop="102679"/>
                    <exon start="102593" stop="102411"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLQTLCFNVTIYCLSFFLRHTIELISLLPKMSVTVSSPAVRSFHVSRSPHKTISRPRVIISAVRSTDSLGVAPILTKLQKDCATPLPVLRHVADAMADDMRAGLAVDGGSDLKMILSYVDTLPTGNEKGLFYALDLGGTNFRVLRVQLGGKEERVVATEFEQVSIPQELMFATSEELFDFIASALGKFAQKEGGNFELQQGRTREIGFTFSFPVKQTSIRTGILIKWTKGFAVSGT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="117078" PGL_stop="113318"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117078" e_stop="116728"/>
            <exon e_start="116256" e_stop="116005"/>
            <exon e_start="115902" e_stop="115802"/>
            <exon e_start="114549" e_stop="113671"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117078" e_stop="116728" e_length="351"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.998">
            <gDNA_intron_boundary i_start="116727" i_stop="116257" i_length="471"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116256" e_stop="116005" e_length="252"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="116004" i_stop="115903" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115902" e_stop="115802" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.976">
            <gDNA_intron_boundary i_start="115801" i_stop="114550" i_length="1252"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="114549" e_stop="113671" e_length="879"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117078" stop="116728"/>
              <exon start="116256" stop="116005"/>
              <exon start="115902" stop="115867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117078" stop="116728"/>
              <exon start="116256" stop="116005"/>
              <exon start="115902" stop="115868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117060" stop="116728"/>
              <exon start="116256" stop="116005"/>
              <exon start="115902" stop="115802"/>
              <exon start="114549" stop="114490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117059" stop="116728"/>
              <exon start="116256" stop="116021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117039" stop="116728"/>
              <exon start="116256" stop="116005"/>
              <exon start="115902" stop="115802"/>
              <exon start="114549" stop="114411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116813" stop="116728"/>
              <exon start="116256" stop="116005"/>
              <exon start="115902" stop="115802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116133" stop="116005"/>
              <exon start="115902" stop="115802"/>
              <exon start="114549" stop="113959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116127" stop="116005"/>
              <exon start="115902" stop="115802"/>
              <exon start="114549" stop="114375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116007" stop="116005"/>
              <exon start="115902" stop="115802"/>
              <exon start="114549" stop="114189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114389" stop="113956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114388" stop="113955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114388" stop="113956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114251" stop="113671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114081" stop="113671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114048" stop="113671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218036" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTTCTCTCTCTCTTTTTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAG : GGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAG : GTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTG : TGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATGTTTTTTTTTTTTTAATTTGTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACTATGATTTTTGTAAATATTTATTTATTTTATTTATTTGTCCTTTTTACATA</gDNA_template>
            <first_frame> K  L  L  S  L  F  F  S  Y  E  K  E  N  F  F  N  N  C  S  V  F  F  P  F  S  C  S  V  F  N  G  T  V  N  I  F  T  R  N  I  R  K  K  S  T  F  K  E  E  E  K  T  T  K  T  E  *  G  E  T  K  A  A  I  F  M  G  S  I  Q  K  L  I  D  L  *  T  N  *  K  L  N  C  S  *  S  C  F  Q  K  P  S  S  F  C  C  C  C  C  S  C  W  S  L  L  *  V  E  F  L  *  L  H  M  Q  F  Q  :  G  C  G  T  W  Q  H  K  S  G  T  *  S  *  *  F  P  R  K  *  Q  F  R  P  R  N  S  S  S  K  Q  E  *  N  F  T  S  *  S  F  I  F  K  F  E  I  S  C  *  I  K  R  *  W  *  L  H  I  H  Y  F  I  K  R  N  A  I  S  *  A  I  W  M  L  *  V  S  H  D  S  R  S  *  Q  :  V  P  F  T  K  V  N  N  L  C  M  S  R  L  W  R  S  F  S  K  N  *  E  L  R  T  S  S  S  S  *  T  C  C :   V  R  V  G  S  G  R  F  K  P  *  H  S  G  N  N  L  Q  I  K  L  A  *  K  G  *  S  D  L  *  D  R  T  D  I  K  S  P  Q  H  Q  T  H  D  P  T  V  R  G  L  *  G  R  G  E  D  T  C  S  G  H  R  Q  E  K  P  K  M  C  S  *  W  K  *  A  A  *  I  L  L  H  E  P  Y  V  R  P  W  C  T  W  L  V  Q  L  V  W  L  G  T  R  L  W  S  L  H  Y  H  T  S  R  F  P  R  K  Q  N  *  W  S  P  H  N  C  *  *  W  A  G  P  R  L  S  W  *  R  Y  G  P  T  Q  G  H  D  R  V  S  G  H  C  W  *  S  Q  A  E  C  G  R  F  S  H  E  R  G  G  E  L  L  W  L  W  F  W  F  W  F  W  L  V  C  Y  W  L  Y  H  I  Q  F  S  S  W  T  C  R  D  L  L  K  S  R  G  I  I  R  I  *  S  K  G  Y  T  S  M  L  C  C  D  I  R  S  I  G  I  L  G  L  M  F  F  F  F  *  F  V  L  E  L  F  V  R  F  S  L  F  F  S  F  L  L  C  P  *  I  Y  V  T  N  F  K  L  V  K  K  K  L  *  H  P  *  G  N  A  D  P  T  M  I  F  V  N  I  Y  L  F  Y  L  F  V  L  F  T   </first_frame>
            <second_frame>  N  F  S  L  S  F  S  L  M  K  K  R  T  S  S  T  I  A  L  F  F  S  H  F  L  A  L  F  L  M  A  L  L  T  F  L  P  E  T  S  E  K  N  Q  P  S  K  R  R  K  K  Q  Q  K  Q  N  K  E  K  Q  K  Q  P  S  S  W  D  Q  F  K  N  L  L  T  C  K  Q  I  E  N  S  T  V  H  D  P  A  S  K  N  P  P  P  S  A  A  A  A  A  P  A  G  A  Y  S  K  L  S  S  C  S  S  I  C  S  F  R :   D  V  V  H  G  N  T  R  V  V  H  R  A  D  N  S  P  E  S  S  S  L  G  Q  E  T  R  L  L  S  K  N  K  T  S  H  H  D  P  S  S  S  S  S  R  S  L  A  R  S  N  G  N  G  S  S  T  Y  T  T  S  S  R  G  M  Q  F  R  K  L  S  G  C  Y  E  C  H  M  I  V  D  P  S  R :   Y  P  L  P  R  S  T  I  C  A  C  P  D  C  G  E  V  F  P  K  I  E  S  L  E  H  H  Q  A  V  K  H  A   : V  S  E  L  G  P  E  D  S  S  R  N  I  V  E  I  I  F  K  S  S  W  L  K  K  D  N  P  I  C  K  I  E  R  I  L  K  V  H  N  T  K  R  T  I  Q  R  F  E  D  C  R  D  A  V  K  I  H  A  V  A  T  G  K  K  N  P  R  C  A  A  D  G  N  E  L  L  R  F  Y  C  T  S  L  T  C  V  L  G  A  R  G  S  S  S  L  C  G  S  V  P  G  C  G  V  C  T  T  I  R  H  G  F  Q  G  N  K  T  S  G  V  R  T  T  A  S  S  G  R  A  H  D  C  L  G  S  G  M  A  R  R  R  A  M  I  V  C  R  V  I  A  G  R  V  K  Q  N  V  G  A  S  P  T  K  E  E  E  N  C  S  G  S  G  S  G  S  G  S  G  L  S  A  T  G  S  T  I  Y  N  S  V  A  G  H  V  G  I  Y  S  N  L  E  E  L  Y  V  F  N  P  R  A  I  L  P  C  F  V  V  I  Y  E  A  L  E  S  *  A  *  C  F  F  F  F  N  L  Y  L  S  C  L  Y  G  L  V  C  F  F  L  F  C  C  V  L  K  F  M  *  L  I  S  S  *  L  K  K  S  C  N  T  R  E  V  M  L  I  Q  L  *  F  L  *  I  F  I  Y  F  I  Y  L  S  F  L  H  </second_frame>
            <third_frame>   T  S  L  S  L  F  L  L  *  K  R  E  L  L  Q  Q  L  L  C  F  F  P  I  F  L  L  C  F  *  W  H  C  *  H  F  Y  Q  K  H  Q  K  K  I  N  L  Q  R  G  G  K  N  N  K  N  R  I  R  R  N  K  S  S  H  L  H  G  I  N  S  K  T  Y  *  L  V  N  K  L  K  T  Q  L  F  M  I  L  L  P  K  T  L  L  L  L  L  L  L  L  L  L  L  E  L  T  L  S  *  V  L  V  A  P  Y  A  V  S   : G  M  W  Y  M  A  T  Q  E  W  Y  I  E  L  I  I  P  Q  K  V  A  V  *  A  K  K  L  V  F  *  A  R  I  K  L  H  I  M  I  L  H  L  Q  V  R  D  L  L  L  D  Q  T  V  M  V  A  P  H  T  L  L  H  Q  E  E  C  N  F  V  S  Y  L  D  V  M  S  V  T  *  *  *  I  L  A   : G  T  L  Y  Q  G  Q  Q  F  V  H  V  Q  I  V  E  K  F  F  Q  K  L  R  A  *  N  I  I  K  Q  L  N  M  L  :  C  Q  S  W  V  R  K  I  Q  A  V  T  *  W  K  *  S  S  N  Q  A  G  L  K  R  I  I  R  S  V  R  S  N  G  Y  *  K  S  T  T  P  N  A  R  S  N  G  S  R  T  V  G  T  R  *  R  Y  M  Q  W  P  Q  A  R  K  T  Q  D  V  Q  L  M  E  M  S  C  L  D  F  T  A  R  A  L  R  A  S  L  V  H  V  A  R  P  A  C  V  A  R  Y  P  V  V  E  F  A  L  P  Y  V  T  V  S  K  E  T  K  L  V  E  S  A  Q  L  L  V  V  G  G  P  T  I  V  L  V  A  V  W  P  D  A  G  P  *  S  C  V  G  S  L  L  V  E  S  S  R  M  W  A  L  L  P  R  K  R  R  R  I  A  L  A  L  V  L  V  L  V  L  A  C  L  L  L  A  L  P  Y  T  I  Q  *  L  D  M  *  G  F  T  Q  I  S  R  N  Y  T  Y  L  I  Q  G  L  Y  F  H  A  L  L  *  Y  T  K  H  W  N  L  R  L  N  V  F  F  F  L  I  C  T  *  A  V  C  T  V  *  F  V  F  F  F  F  V  V  S  L  N  L  C  N  *  F  Q  V  S  *  K  K  V  V  T  P  V  R  *  C  *  S  N  Y  D  F  C  K  Y  L  F  I  L  F  I  C  P  F  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117077" stop="116728"/>
                    <exon start="116256" stop="116005"/>
                    <exon start="115902" stop="115802"/>
                    <exon start="114549" stop="113873"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1377</number_coding_nucleotides>
                  <number_encoded_amino_acids>459</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFSLSFSLMKKRTSSTIALFFSHFLALFLMALLTFLPETSEKNQPSKRRKKQQKQNKEKQKQPSSWDQFKNLLTCKQIENSTVHDPASKNPPPSAAAAAPAGAYSKLSSCSSICSFRDVVHGNTRVVHRADNSPESSSLGQETRLLSKNKTSHHDPSSSSSRSLARSNGNGSSTYTTSSRGMQFRKLSGCYECHMIVDPSRYPLPRSTICACPDCGEVFPKIESLEHHQAVKHAVSELGPEDSSRNIVEIIFKSSWLKKDNPICKIERILKVHNTKRTIQRFEDCRDAVKIHAVATGKKNPRCAADGNELLRFYCTSLTCVLGARGSSSLCGSVPGCGVCTTIRHGFQGNKTSGVRTTASSGRAHDCLGSGMARRRAMIVCRVIAGRVKQNVGASPTKEEENCSGSGSGSGSGLSATGSTIYNSVAGHVGIYSNLEELYVFNPRAILPCFVVIYEALES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="117078" e_stop="116728"/>
            <exon e_start="116256" e_stop="116005"/>
            <exon e_start="115902" e_stop="115802"/>
            <exon e_start="114549" e_stop="113695"/>
            <exon e_start="113337" e_stop="113318"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.953" e_score="0.992"/>
          <exon-only e_score="0.650"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117078" e_stop="116728" e_length="351"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.998">
            <gDNA_intron_boundary i_start="116727" i_stop="116257" i_length="471"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116256" e_stop="116005" e_length="252"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="116004" i_stop="115903" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115902" e_stop="115802" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.976">
            <gDNA_intron_boundary i_start="115801" i_stop="114550" i_length="1252"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="114549" e_stop="113695" e_length="855"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.953">
            <gDNA_intron_boundary i_start="113694" i_stop="113338" i_length="357"/>
          </intron>
          <exon e_serial="5" e_score="0.650">
            <gDNA_exon_boundary e_start="113337" e_stop="113318" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117078" stop="116728"/>
              <exon start="116256" stop="116005"/>
              <exon start="115902" stop="115867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117078" stop="116728"/>
              <exon start="116256" stop="116005"/>
              <exon start="115902" stop="115868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117060" stop="116728"/>
              <exon start="116256" stop="116005"/>
              <exon start="115902" stop="115802"/>
              <exon start="114549" stop="114490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117059" stop="116728"/>
              <exon start="116256" stop="116021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117039" stop="116728"/>
              <exon start="116256" stop="116005"/>
              <exon start="115902" stop="115802"/>
              <exon start="114549" stop="114411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116813" stop="116728"/>
              <exon start="116256" stop="116005"/>
              <exon start="115902" stop="115802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116133" stop="116005"/>
              <exon start="115902" stop="115802"/>
              <exon start="114549" stop="113959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116127" stop="116005"/>
              <exon start="115902" stop="115802"/>
              <exon start="114549" stop="114375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116007" stop="116005"/>
              <exon start="115902" stop="115802"/>
              <exon start="114549" stop="114189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114389" stop="113956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114388" stop="113955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114388" stop="113956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114359" stop="113695"/>
              <exon start="113337" stop="113318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540782" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTTCTCTCTCTCTTTTTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAG : GGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAG : GTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTG : TGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATGTTTTTTTTTTTTTAATTTGTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACTATGATTTTTGTAAATATTTATTTATT : CTGCAAGAAATAAAGGTAAA</gDNA_template>
            <first_frame> K  L  L  S  L  F  F  S  Y  E  K  E  N  F  F  N  N  C  S  V  F  F  P  F  S  C  S  V  F  N  G  T  V  N  I  F  T  R  N  I  R  K  K  S  T  F  K  E  E  E  K  T  T  K  T  E  *  G  E  T  K  A  A  I  F  M  G  S  I  Q  K  L  I  D  L  *  T  N  *  K  L  N  C  S  *  S  C  F  Q  K  P  S  S  F  C  C  C  C  C  S  C  W  S  L  L  *  V  E  F  L  *  L  H  M  Q  F  Q  :  G  C  G  T  W  Q  H  K  S  G  T  *  S  *  *  F  P  R  K  *  Q  F  R  P  R  N  S  S  S  K  Q  E  *  N  F  T  S  *  S  F  I  F  K  F  E  I  S  C  *  I  K  R  *  W  *  L  H  I  H  Y  F  I  K  R  N  A  I  S  *  A  I  W  M  L  *  V  S  H  D  S  R  S  *  Q  :  V  P  F  T  K  V  N  N  L  C  M  S  R  L  W  R  S  F  S  K  N  *  E  L  R  T  S  S  S  S  *  T  C  C :   V  R  V  G  S  G  R  F  K  P  *  H  S  G  N  N  L  Q  I  K  L  A  *  K  G  *  S  D  L  *  D  R  T  D  I  K  S  P  Q  H  Q  T  H  D  P  T  V  R  G  L  *  G  R  G  E  D  T  C  S  G  H  R  Q  E  K  P  K  M  C  S  *  W  K  *  A  A  *  I  L  L  H  E  P  Y  V  R  P  W  C  T  W  L  V  Q  L  V  W  L  G  T  R  L  W  S  L  H  Y  H  T  S  R  F  P  R  K  Q  N  *  W  S  P  H  N  C  *  *  W  A  G  P  R  L  S  W  *  R  Y  G  P  T  Q  G  H  D  R  V  S  G  H  C  W  *  S  Q  A  E  C  G  R  F  S  H  E  R  G  G  E  L  L  W  L  W  F  W  F  W  F  W  L  V  C  Y  W  L  Y  H  I  Q  F  S  S  W  T  C  R  D  L  L  K  S  R  G  I  I  R  I  *  S  K  G  Y  T  S  M  L  C  C  D  I  R  S  I  G  I  L  G  L  M  F  F  F  F  *  F  V  L  E  L  F  V  R  F  S  L  F  F  S  F  L  L  C  P  *  I  Y  V  T  N  F  K  L  V  K  K  K  L  *  H  P  *  G  N  A  D  P  T  M  I  F  V  N  I  Y  L  F :   C  K  K  *  R  *  </first_frame>
            <second_frame>  N  F  S  L  S  F  S  L  M  K  K  R  T  S  S  T  I  A  L  F  F  S  H  F  L  A  L  F  L  M  A  L  L  T  F  L  P  E  T  S  E  K  N  Q  P  S  K  R  R  K  K  Q  Q  K  Q  N  K  E  K  Q  K  Q  P  S  S  W  D  Q  F  K  N  L  L  T  C  K  Q  I  E  N  S  T  V  H  D  P  A  S  K  N  P  P  P  S  A  A  A  A  A  P  A  G  A  Y  S  K  L  S  S  C  S  S  I  C  S  F  R :   D  V  V  H  G  N  T  R  V  V  H  R  A  D  N  S  P  E  S  S  S  L  G  Q  E  T  R  L  L  S  K  N  K  T  S  H  H  D  P  S  S  S  S  S  R  S  L  A  R  S  N  G  N  G  S  S  T  Y  T  T  S  S  R  G  M  Q  F  R  K  L  S  G  C  Y  E  C  H  M  I  V  D  P  S  R :   Y  P  L  P  R  S  T  I  C  A  C  P  D  C  G  E  V  F  P  K  I  E  S  L  E  H  H  Q  A  V  K  H  A   : V  S  E  L  G  P  E  D  S  S  R  N  I  V  E  I  I  F  K  S  S  W  L  K  K  D  N  P  I  C  K  I  E  R  I  L  K  V  H  N  T  K  R  T  I  Q  R  F  E  D  C  R  D  A  V  K  I  H  A  V  A  T  G  K  K  N  P  R  C  A  A  D  G  N  E  L  L  R  F  Y  C  T  S  L  T  C  V  L  G  A  R  G  S  S  S  L  C  G  S  V  P  G  C  G  V  C  T  T  I  R  H  G  F  Q  G  N  K  T  S  G  V  R  T  T  A  S  S  G  R  A  H  D  C  L  G  S  G  M  A  R  R  R  A  M  I  V  C  R  V  I  A  G  R  V  K  Q  N  V  G  A  S  P  T  K  E  E  E  N  C  S  G  S  G  S  G  S  G  S  G  L  S  A  T  G  S  T  I  Y  N  S  V  A  G  H  V  G  I  Y  S  N  L  E  E  L  Y  V  F  N  P  R  A  I  L  P  C  F  V  V  I  Y  E  A  L  E  S  *  A  *  C  F  F  F  F  N  L  Y  L  S  C  L  Y  G  L  V  C  F  F  L  F  C  C  V  L  K  F  M  *  L  I  S  S  *  L  K  K  S  C  N  T  R  E  V  M  L  I  Q  L  *  F  L  *  I  F  I  Y   : S  A  R  N  K  G  K </second_frame>
            <third_frame>   T  S  L  S  L  F  L  L  *  K  R  E  L  L  Q  Q  L  L  C  F  F  P  I  F  L  L  C  F  *  W  H  C  *  H  F  Y  Q  K  H  Q  K  K  I  N  L  Q  R  G  G  K  N  N  K  N  R  I  R  R  N  K  S  S  H  L  H  G  I  N  S  K  T  Y  *  L  V  N  K  L  K  T  Q  L  F  M  I  L  L  P  K  T  L  L  L  L  L  L  L  L  L  L  L  E  L  T  L  S  *  V  L  V  A  P  Y  A  V  S   : G  M  W  Y  M  A  T  Q  E  W  Y  I  E  L  I  I  P  Q  K  V  A  V  *  A  K  K  L  V  F  *  A  R  I  K  L  H  I  M  I  L  H  L  Q  V  R  D  L  L  L  D  Q  T  V  M  V  A  P  H  T  L  L  H  Q  E  E  C  N  F  V  S  Y  L  D  V  M  S  V  T  *  *  *  I  L  A   : G  T  L  Y  Q  G  Q  Q  F  V  H  V  Q  I  V  E  K  F  F  Q  K  L  R  A  *  N  I  I  K  Q  L  N  M  L  :  C  Q  S  W  V  R  K  I  Q  A  V  T  *  W  K  *  S  S  N  Q  A  G  L  K  R  I  I  R  S  V  R  S  N  G  Y  *  K  S  T  T  P  N  A  R  S  N  G  S  R  T  V  G  T  R  *  R  Y  M  Q  W  P  Q  A  R  K  T  Q  D  V  Q  L  M  E  M  S  C  L  D  F  T  A  R  A  L  R  A  S  L  V  H  V  A  R  P  A  C  V  A  R  Y  P  V  V  E  F  A  L  P  Y  V  T  V  S  K  E  T  K  L  V  E  S  A  Q  L  L  V  V  G  G  P  T  I  V  L  V  A  V  W  P  D  A  G  P  *  S  C  V  G  S  L  L  V  E  S  S  R  M  W  A  L  L  P  R  K  R  R  R  I  A  L  A  L  V  L  V  L  V  L  A  C  L  L  L  A  L  P  Y  T  I  Q  *  L  D  M  *  G  F  T  Q  I  S  R  N  Y  T  Y  L  I  Q  G  L  Y  F  H  A  L  L  *  Y  T  K  H  W  N  L  R  L  N  V  F  F  F  L  I  C  T  *  A  V  C  T  V  *  F  V  F  F  F  F  V  V  S  L  N  L  C  N  *  F  Q  V  S  *  K  K  V  V  T  P  V  R  *  C  *  S  N  Y  D  F  C  K  Y  L  F  I  :  L  Q  E  I  K  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117077" stop="116728"/>
                    <exon start="116256" stop="116005"/>
                    <exon start="115902" stop="115802"/>
                    <exon start="114549" stop="113873"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1377</number_coding_nucleotides>
                  <number_encoded_amino_acids>459</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFSLSFSLMKKRTSSTIALFFSHFLALFLMALLTFLPETSEKNQPSKRRKKQQKQNKEKQKQPSSWDQFKNLLTCKQIENSTVHDPASKNPPPSAAAAAPAGAYSKLSSCSSICSFRDVVHGNTRVVHRADNSPESSSLGQETRLLSKNKTSHHDPSSSSSRSLARSNGNGSSTYTTSSRGMQFRKLSGCYECHMIVDPSRYPLPRSTICACPDCGEVFPKIESLEHHQAVKHAVSELGPEDSSRNIVEIIFKSSWLKKDNPICKIERILKVHNTKRTIQRFEDCRDAVKIHAVATGKKNPRCAADGNELLRFYCTSLTCVLGARGSSSLCGSVPGCGVCTTIRHGFQGNKTSGVRTTASSGRAHDCLGSGMARRRAMIVCRVIAGRVKQNVGASPTKEEENCSGSGSGSGSGLSATGSTIYNSVAGHVGIYSNLEELYVFNPRAILPCFVVIYEALES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="+" PGL_start="120532" PGL_stop="126559"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120532" e_stop="120775"/>
            <exon e_start="120930" e_stop="121057"/>
            <exon e_start="122067" e_stop="122175"/>
            <exon e_start="122614" e_stop="122695"/>
            <exon e_start="122766" e_stop="122836"/>
            <exon e_start="123514" e_stop="123555"/>
            <exon e_start="123838" e_stop="123962"/>
            <exon e_start="124266" e_stop="124359"/>
            <exon e_start="124514" e_stop="124580"/>
            <exon e_start="124693" e_stop="124880"/>
            <exon e_start="124963" e_stop="125068"/>
            <exon e_start="125616" e_stop="125702"/>
            <exon e_start="126080" e_stop="126559"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.972" e_score="0.996"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.615" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.875" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.729" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.145" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="120532" e_stop="120775" e_length="244"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.972">
            <gDNA_intron_boundary i_start="120776" i_stop="120929" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120930" e_stop="121057" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="121058" i_stop="122066" i_length="1009"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="122067" e_stop="122175" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="122176" i_stop="122613" i_length="438"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122614" e_stop="122695" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.615" acc_prob="0.999">
            <gDNA_intron_boundary i_start="122696" i_stop="122765" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="122766" e_stop="122836" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.976">
            <gDNA_intron_boundary i_start="122837" i_stop="123513" i_length="677"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="123514" e_stop="123555" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.917">
            <gDNA_intron_boundary i_start="123556" i_stop="123837" i_length="282"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="123838" e_stop="123962" e_length="125"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="123963" i_stop="124265" i_length="303"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="124266" e_stop="124359" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.875" acc_prob="0.990">
            <gDNA_intron_boundary i_start="124360" i_stop="124513" i_length="154"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="124514" e_stop="124580" e_length="67"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.729">
            <gDNA_intron_boundary i_start="124581" i_stop="124692" i_length="112"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="124693" e_stop="124880" e_length="188"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="124881" i_stop="124962" i_length="82"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="124963" e_stop="125068" e_length="106"/>
          </exon>
          <intron i_serial="11" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="125069" i_stop="125615" i_length="547"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="125616" e_stop="125702" e_length="87"/>
          </exon>
          <intron i_serial="12" don_prob="0.145" acc_prob="0.995">
            <gDNA_intron_boundary i_start="125703" i_stop="126079" i_length="377"/>
          </intron>
          <exon e_serial="13" e_score="0.998">
            <gDNA_exon_boundary e_start="126080" e_stop="126559" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120532" stop="120775"/>
              <exon start="120930" stop="121057"/>
              <exon start="122067" stop="122175"/>
              <exon start="122614" stop="122695"/>
              <exon start="122766" stop="122836"/>
              <exon start="123514" stop="123555"/>
              <exon start="123838" stop="123962"/>
              <exon start="124266" stop="124359"/>
              <exon start="124514" stop="124580"/>
              <exon start="124693" stop="124880"/>
              <exon start="124963" stop="125068"/>
              <exon start="125616" stop="125702"/>
              <exon start="126080" stop="126559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120602" stop="120775"/>
              <exon start="120930" stop="121057"/>
              <exon start="122067" stop="122175"/>
              <exon start="122614" stop="122695"/>
              <exon start="122766" stop="122773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120603" stop="120775"/>
              <exon start="120930" stop="121057"/>
              <exon start="122067" stop="122175"/>
              <exon start="122614" stop="122695"/>
              <exon start="122766" stop="122829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120609" stop="120775"/>
              <exon start="120930" stop="121057"/>
              <exon start="122067" stop="122175"/>
              <exon start="122614" stop="122695"/>
              <exon start="122766" stop="122836"/>
              <exon start="123514" stop="123555"/>
              <exon start="123838" stop="123922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120650" stop="120775"/>
              <exon start="120930" stop="121057"/>
              <exon start="122067" stop="122175"/>
              <exon start="122614" stop="122680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120744" stop="120775"/>
              <exon start="120930" stop="121057"/>
              <exon start="122067" stop="122175"/>
              <exon start="122614" stop="122695"/>
              <exon start="122766" stop="122836"/>
              <exon start="123514" stop="123555"/>
              <exon start="123838" stop="123893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123514" stop="123555"/>
              <exon start="123838" stop="123962"/>
              <exon start="124266" stop="124359"/>
              <exon start="124514" stop="124580"/>
              <exon start="124693" stop="124844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209925" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCGTTTAGGGTTCTAGGGTTTAAACTAACAGAGAACTGAAGCTTATAGTGTAACTTCCTTCTCTACTGCTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC : GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG : GTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAA : GCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA : GATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAG : CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG : ATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAG : GTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAG : AATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAG : GAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGAGGCCATCAAGTCGTGGAAAGAAAACGGTTTTTCCAG : CCTAATAATTGCTGCTCCGGAACTGGACCCATGGGGCATTATTAAAGAAGTGCTTCCTCTTTTATCATTTTCAGCTCCTTTTGCTGTTTATCACCAGTATGCTCAG : CCCCTAGCTACGTGTATGCACAACCTGCAGATTGAGAAAATGGCGATTGGATTACAAATTTCTGAACCTTGGCTACGTGAATATCAG : GTACTCCCATCAAGAACCCATCCACATATGCAGATGAGCGCGTTTGGTGGTTATATACTAAGTGGCACGAAAATATCGAGCAGTGACTCCCTTACCAGCTCTAACTAGGATAAATTTTTTTGGCATCTCACTCTGCTTGGTTGTACATGTCGCTTGACGATACCATTTTCGTCTTTCGAGAATATTCCCTGTTAGAATAGATGTAGGGATTATCTTGTCTCTTTTCTGGGGCAGAAACAAGGTTACTCATGTTGTACTTTTATTCATTGATTGATGTATGCTTGCTTTTGTATGAGCAATTCTTCTAAATCAAAAGACTAAAGGGTCTTTTTCCTCTTACTTTATAAAGTATTTGAAGATTAAGTGGTAAATTGTAGAATTATATTGTTGTCTTTCTTGGATCAAGCAATTGAAGTCTGTTTTGTTGAAGAAATATAAAATATGTAATACAACATTAACAATTATTCTTCAACTCCAAAC</gDNA_template>
            <first_frame> H  R  L  G  F  *  G  L  N  *  Q  R  T  E  A  Y  S  V  T  S  F  S  T  A  S  S  N  A  *  R  L  N  F  *  Q  Q  K  C  L  L  K  K  Q  L  M  R  I  R  S  K  I  I  I  V  D  *  L  M  K  V  A  M  Y  C  L  T  S  M  M  A  T  V  *  F  F  L  V  L  L  L  P   : R  H  *  K  L  G  I  R  S  V  L  F  S  L  L  *  V  V  H  S  G  L  C  F  K  W  S  R  E  K  K  E  P  F  *  L  V  L  L  R  M  Q  K  :  V  T  A  L  K  K  K  T  W  M  D  L  K  T  T  V  R  L  L  I  I  I  L  L  R  V  S  L  V  K  I  L  T  R  C  E   : S  R  E  Q  K  G  M  K  *  L  K  H  S  L  Q  T  V  Q  L  L  R  R  R  H  Y  F  H  K :   I  S  I  G  L  R  N  R  R  N  M  H  L  E  Y  F  *  G  A  P  L  H  E   : A  F  V  R  P  T  S  R  N  I  L  K  K  S   : D  S  C  E  W  M  H  Y  L  Y  C  S  P  W  G  M  L  L  Q  M  Q  M  Y  L  *  W  T  C  S  V  V  F  L  L  V  L  L  Q  N  D  L  E  :  V  L  V  M  C  A  I  L  I  V  D  H  H  H  I  L  S  I  S  Q  G  C  L  I  *  A  M  K  S  V  K   : E  S  C  M  H  H  *  P  T  *  I  H  F  K  L  E  L  Q  C  L  R  V  R :   K  K  P  Y  L  S  L  I  L  V  V  *  T  K  L  V  C  Q  L  K  M  V  A  W  M  *  H  L  R  E  F  L  L  Q  *  S  S  L  L  N  L  *  K  Q  V  R  K  Q  P  S  R  P  S  S  R  G  K  K  T  V  F  P   : A  *  *  L  L  L  R  N  W  T  H  G  A  L  L  K  K  C  F  L  F  Y  H  F  Q  L  L  L  L  F  I  T  S  M  L  S :   P  *  L  R  V  C  T  T  C  R  L  R  K  W  R  L  D  Y  K  F  L  N  L  G  Y  V  N  I  R :   Y  S  H  Q  E  P  I  H  I  C  R  *  A  R  L  V  V  I  Y  *  V  A  R  K  Y  R  A  V  T  P  L  P  A  L  T  R  I  N  F  F  G  I  S  L  C  L  V  V  H  V  A  *  R  Y  H  F  R  L  S  R  I  F  P  V  R  I  D  V  G  I  I  L  S  L  F  W  G  R  N  K  V  T  H  V  V  L  L  F  I  D  *  C  M  L  A  F  V  *  A  I  L  L  N  Q  K  T  K  G  S  F  S  S  Y  F  I  K  Y  L  K  I  K  W  *  I  V  E  L  Y  C  C  L  S  W  I  K  Q  L  K  S  V  L  L  K  K  Y  K  I  C  N  T  T  L  T  I  I  L  Q  L  Q   </first_frame>
            <second_frame>  I  V  *  G  S  R  V  *  T  N  R  E  L  K  L  I  V  *  L  P  S  L  L  L  H  L  M  L  K  D  *  I  F  S  S  K  N  V  Y  *  R  S  S  *  *  G  F  E  A  K  S  *  *  *  I  N  L  *  R  L  Q  C  I  A  *  H  Q  *  W  R  P  F  S  F  F  S  S  Y  C  C  L  :  D  I  E  N  W  E  *  E  V  F  S  S  A  S  Y  R  L  S  I  R  V  S  V  S  S  G  A  G  K  R  R  N  L  F  D  S  F  C  *  E  C  R  R :   *  R  P  *  R  K  R  R  G  W  I  *  R  Q  P  C  A  C  *  *  *  Y  C  S  E  S  H  *  *  R  Y  *  R  D  A  K  :  A  G  S  K  R  G  *  N  S  *  S  T  H  C  K  Q  C  N  F  *  E  E  D  I  I  F  T   : R  *  V  *  G  *  E  T  E  E  I  C  T  S  S  T  F  E  A  P  L  C  T  K  :  H  L  *  G  L  L  Q  E  T  S  *  K  N  R  :  I  H  A  S  G  C  T  I  S  T  A  L  L  G  E  C  Y  C  K  C  R  C  T  C  S  G  H  A  Q  W  Y  S  Y  W  C  Y  C  R  T  T  W  R :   Y  W  L  C  V  Q  Y  L  S  W  I  I  T  I  S  C  R  Y  H  K  D  V  *  F  K  R  *  N  L  *  K  :  N  R  A  C  I  T  D  R  P  E  F  I  S  N  W  S  F  S  V  *  G  S   : G  R  N  L  T  C  H  S  F  W  W  S  R  R  S  *  C  A  S  *  R  W  W  H  G  C  N  T  *  E  S  F  F  S  N  N  Q  A  C  *  I  Y  K  S  R  S  E  S  N  P  R  G  H  Q  V  V  E  R  K  R  F  F  Q  :  P  N  N  C  C  S  G  T  G  P  M  G  H  Y  *  R  S  A  S  S  F  I  I  F  S  S  F  C  C  L  S  P  V  C  S   : A  P  S  Y  V  Y  A  Q  P  A  D  *  E  N  G  D  W  I  T  N  F  *  T  L  A  T  *  I  S   : G  T  P  I  K  N  P  S  T  Y  A  D  E  R  V  W  W  L  Y  T  K  W  H  E  N  I  E  Q  *  L  P  Y  Q  L  *  L  G  *  I  F  L  A  S  H  S  A  W  L  Y  M  S  L  D  D  T  I  F  V  F  R  E  Y  S  L  L  E  *  M  *  G  L  S  C  L  F  S  G  A  E  T  R  L  L  M  L  Y  F  Y  S  L  I  D  V  C  L  L  L  Y  E  Q  F  F  *  I  K  R  L  K  G  L  F  P  L  T  L  *  S  I  *  R  L  S  G  K  L  *  N  Y  I  V  V  F  L  G  S  S  N  *  S  L  F  C  *  R  N  I  K  Y  V  I  Q  H  *  Q  L  F  F  N  S  K  </second_frame>
            <third_frame>   S  F  R  V  L  G  F  K  L  T  E  N  *  S  L  *  C  N  F  L  L  Y  C  F  I  *  C  L  K  I  E  F  L  A  A  K  M  S  I  E  E  A  V  D  E  D  S  K  Q  N  H  N  S  R  L  T  Y  E  G  C  N  V  L  L  D  I  N  D  G  D  R  L  V  F  S  R  L  T  A  A  S :   T  L  K  I  G  N  K  K  C  S  L  Q  P  L  I  G  C  P  F  G  S  L  F  Q  V  E  P  G  K  E  G  T  F  L  T  R  F  V  E  N  A  E   : G  N  G  L  E  E  K  D  V  D  G  S  K  D  N  R  A  L  V  D  N  N  T  A  Q  S  L  T  S  E  D  I  D  E  M  R  K :   Q  G  A  K  G  D  E  I  V  E  A  L  I  A  N  S  A  T  F  E  K  K  T  L  F  S  Q  :  D  K  Y  R  V  K  K  Q  K  K  Y  A  P  R  V  L  L  R  R  P  F  A  R  S :   I  C  E  A  Y  F  K  K  H  P  E  K  I  G :   F  M  R  V  D  A  L  S  L  L  L  S  L  G  N  V  T  A  N  A  D  V  L  V  V  D  M  L  S  G  I  L  T  G  A  I  A  E  R  L  G   : G  T  G  Y  V  C  N  T  Y  R  G  S  S  P  Y  P  V  D  I  T  R  M  F  N  L  S  D  E  I  C  K  R :   I  V  H  A  S  L  T  D  L  N  S  F  Q  T  G  A  S  V  S  E  G  Q  :  E  E  T  L  P  V  T  H  S  G  G  L  D  E  V  S  V  P  A  E  D  G  G  M  D  V  T  P  E  R  V  S  S  P  I  I  K  P  V  K  S  I  K  A  G  Q  K  A  T  L  E  A  I  K  S  W  K  E  N  G  F  S  S :   L  I  I  A  A  P  E  L  D  P  W  G  I  I  K  E  V  L  P  L  L  S  F  S  A  P  F  A  V  Y  H  Q  Y  A  Q  :  P  L  A  T  C  M  H  N  L  Q  I  E  K  M  A  I  G  L  Q  I  S  E  P  W  L  R  E  Y  Q  :  V  L  P  S  R  T  H  P  H  M  Q  M  S  A  F  G  G  Y  I  L  S  G  T  K  I  S  S  S  D  S  L  T  S  S  N  *  D  K  F  F  W  H  L  T  L  L  G  C  T  C  R  L  T  I  P  F  S  S  F  E  N  I  P  C  *  N  R  C  R  D  Y  L  V  S  F  L  G  Q  K  Q  G  Y  S  C  C  T  F  I  H  *  L  M  Y  A  C  F  C  M  S  N  S  S  K  S  K  D  *  R  V  F  F  L  L  L  Y  K  V  F  E  D  *  V  V  N  C  R  I  I  L  L  S  F  L  D  Q  A  I  E  V  C  F  V  E  E  I  *  N  M  *  Y  N  I  N  N  Y  S  S  T  P  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120612" stop="120775"/>
                    <exon start="120930" stop="121057"/>
                    <exon start="122067" stop="122175"/>
                    <exon start="122614" stop="122695"/>
                    <exon start="122766" stop="122836"/>
                    <exon start="123514" stop="123555"/>
                    <exon start="123838" stop="123962"/>
                    <exon start="124266" stop="124359"/>
                    <exon start="124514" stop="124580"/>
                    <exon start="124693" stop="124880"/>
                    <exon start="124963" stop="125068"/>
                    <exon start="125616" stop="125702"/>
                    <exon start="126080" stop="126187"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1368</number_coding_nucleotides>
                  <number_encoded_amino_acids>456</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLKIEFLAAKMSIEEAVDEDSKQNHNSRLTYEGCNVLLDINDGDRLVFSRLTAASTLKIGNKKCSLQPLIGCPFGSLFQVEPGKEGTFLTRFVENAEGNGLEEKDVDGSKDNRALVDNNTAQSLTSEDIDEMRKQGAKGDEIVEALIANSATFEKKTLFSQDKYRVKKQKKYAPRVLLRRPFARSICEAYFKKHPEKIGFMRVDALSLLLSLGNVTANADVLVVDMLSGILTGAIAERLGGTGYVCNTYRGSSPYPVDITRMFNLSDEICKRIVHASLTDLNSFQTGASVSEGQEETLPVTHSGGLDEVSVPAEDGGMDVTPERVSSPIIKPVKSIKAGQKATLEAIKSWKENGFSSLIIAAPELDPWGIIKEVLPLLSFSAPFAVYHQYAQPLATCMHNLQIEKMAIGLQISEPWLREYQVLPSRTHPHMQMSAFGGYILSGTKISSSDSLTSSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="+" PGL_start="133488" PGL_stop="134492"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133488" e_stop="133540"/>
            <exon e_start="133735" e_stop="133909"/>
            <exon e_start="134199" e_stop="134492"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.650" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="133488" e_stop="133540" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.650">
            <gDNA_intron_boundary i_start="133541" i_stop="133734" i_length="194"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="133735" e_stop="133909" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="133910" i_stop="134198" i_length="289"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="134199" e_stop="134492" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133488" stop="133540"/>
              <exon start="133735" stop="133909"/>
              <exon start="134199" stop="134492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318126" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATAAGCTTATTCTTAGAAGCACAACAGGGCCGATAGATTTGTTTCTCTTGAG : CAAACAGGGTAGGCAGCATGAGGACATAACCATCAAACATGACAAGTCCATGGATTCAGTGTCTGCTGCAAAAAAGATGGATGATGCTTACCCATCCCCAGCACATCCTTGCTCTTTAGATTCAACAGACTCAAAGCTCTCGGGTGTCCATAAAATAGTACCTTCTCATAACAGT : ATAGATGATGATTACTGGTTGCGCTCGGAGGAGGCGGTTAGCGCAACTGCTCTGTGGGGCATTGAATAATCTTTAAAATTGAGCCTGGTTACAAACTCCATATATGGATACCAGAAGATATACAGAAATAAGGCTTCTTATAAACATGTAAATATCTTTTGAAGCTAAAAAGCTTTACATATCTCTAGCCAGATTATAGTAAGAAACAACTGGTTTCAGGGAAACTCCTACAACTTTTGCGTACAACTATATGGTTCACAGGAATATCAGTCTTATGATTAACCAATGCTGGGA</gDNA_template>
            <first_frame> Y  K  L  I  L  R  S  T  T  G  P  I  D  L  F  L  L  S :   K  Q  G  R  Q  H  E  D  I  T  I  K  H  D  K  S  M  D  S  V  S  A  A  K  K  M  D  D  A  Y  P  S  P  A  H  P  C  S  L  D  S  T  D  S  K  L  S  G  V  H  K  I  V  P  S  H  N  S  :  I  D  D  D  Y  W  L  R  S  E  E  A  V  S  A  T  A  L  W  G  I  E  *  S  L  K  L  S  L  V  T  N  S  I  Y  G  Y  Q  K  I  Y  R  N  K  A  S  Y  K  H  V  N  I  F  *  S  *  K  A  L  H  I  S  S  Q  I  I  V  R  N  N  W  F  Q  G  N  S  Y  N  F  C  V  Q  L  Y  G  S  Q  E  Y  Q  S  Y  D  *  P  M  L  G </first_frame>
            <second_frame>  I  S  L  F  L  E  A  Q  Q  G  R  *  I  C  F  S  *   : A  N  R  V  G  S  M  R  T  *  P  S  N  M  T  S  P  W  I  Q  C  L  L  Q  K  R  W  M  M  L  T  H  P  Q  H  I  L  A  L  *  I  Q  Q  T  Q  S  S  R  V  S  I  K  *  Y  L  L  I  T  V :   *  M  M  I  T  G  C  A  R  R  R  R  L  A  Q  L  L  C  G  A  L  N  N  L  *  N  *  A  W  L  Q  T  P  Y  M  D  T  R  R  Y  T  E  I  R  L  L  I  N  M  *  I  S  F  E  A  K  K  L  Y  I  S  L  A  R  L  *  *  E  T  T  G  F  R  E  T  P  T  T  F  A  Y  N  Y  M  V  H  R  N  I  S  L  M  I  N  Q  C  W   </second_frame>
            <third_frame>   *  A  Y  S  *  K  H  N  R  A  D  R  F  V  S  L  E  :  Q  T  G  *  A  A  *  G  H  N  H  Q  T  *  Q  V  H  G  F  S  V  C  C  K  K  D  G  *  C  L  P  I  P  S  T  S  L  L  F  R  F  N  R  L  K  A  L  G  C  P  *  N  S  T  F  S  *  Q   : Y  R  *  *  L  L  V  A  L  G  G  G  G  *  R  N  C  S  V  G  H  *  I  I  F  K  I  E  P  G  Y  K  L  H  I  W  I  P  E  D  I  Q  K  *  G  F  L  *  T  C  K  Y  L  L  K  L  K  S  F  T  Y  L  *  P  D  Y  S  K  K  Q  L  V  S  G  K  L  L  Q  L  L  R  T  T  I  W  F  T  G  I  S  V  L  *  L  T  N  A  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133488" stop="133540"/>
                    <exon start="133735" stop="133909"/>
                    <exon start="134199" stop="134267"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKLILRSTTGPIDLFLLSKQGRQHEDITIKHDKSMDSVSAAKKMDDAYPSPAHPCSLDSTDSKLSGVHKIVPSHNSIDDDYWLRSEEAVSATALWGIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="28" PGL_strand="-" PGL_start="135626" PGL_stop="135199"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135626" e_stop="135199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="135626" e_stop="135199" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135626" stop="135199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135626" stop="135199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354342" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGACAAGGACCTCAAACAACCCTTGATTTATGTCATCAAGTACTTAACCCCCCATGGTAATTTGAATATGTAGTTTATATACATCGGAAAAAGGATTGGTTCTTCAATGTACATCTGGCATATCTTAGTTCATTCATTACTGTTGTCCATGATTTTTTAGCATGGCTCGAAAAGTATAAGGGTCGTCGAGTGTGTAGGATTGCCAGATGCAATTACCATTCATTATTAAATATCCAAATTATAGTACTTACGTTTGTGTGAAGGTGGGAAAATGATCATGAATCTATGAAGTTAAGAGTTATCTTAGAGGATCACTGTACATACATATAAACATCTGGTTCTTGAGATGGCTTGGTTGATGTACTGAATGGTAATTGGAATGGGACTGGGCTTCTATAATTGTATCTCTTCTAATAAACTTTTGAA</gDNA_template>
            <first_frame> K  D  K  D  L  K  Q  P  L  I  Y  V  I  K  Y  L  T  P  H  G  N  L  N  M  *  F  I  Y  I  G  K  R  I  G  S  S  M  Y  I  W  H  I  L  V  H  S  L  L  L  S  M  I  F  *  H  G  S  K  S  I  R  V  V  E  C  V  G  L  P  D  A  I  T  I  H  Y  *  I  S  K  L  *  Y  L  R  L  C  E  G  G  K  M  I  M  N  L  *  S  *  E  L  S  *  R  I  T  V  H  T  Y  K  H  L  V  L  E  M  A  W  L  M  Y  *  M  V  I  G  M  G  L  G  F  Y  N  C  I  S  S  N  K  L  L   </first_frame>
            <second_frame>  K  T  R  T  S  N  N  P  *  F  M  S  S  S  T  *  P  P  M  V  I  *  I  C  S  L  Y  T  S  E  K  G  L  V  L  Q  C  T  S  G  I  S  *  F  I  H  Y  C  C  P  *  F  F  S  M  A  R  K  V  *  G  S  S  S  V  *  D  C  Q  M  Q  L  P  F  I  I  K  Y  P  N  Y  S  T  Y  V  C  V  K  V  G  K  *  S  *  I  Y  E  V  K  S  Y  L  R  G  S  L  Y  I  H  I  N  I  W  F  L  R  W  L  G  *  C  T  E  W  *  L  E  W  D  W  A  S  I  I  V  S  L  L  I  N  F  *  </second_frame>
            <third_frame>   R  Q  G  P  Q  T  T  L  D  L  C  H  Q  V  L  N  P  P  W  *  F  E  Y  V  V  Y  I  H  R  K  K  D  W  F  F  N  V  H  L  A  Y  L  S  S  F  I  T  V  V  H  D  F  L  A  W  L  E  K  Y  K  G  R  R  V  C  R  I  A  R  C  N  Y  H  S  L  L  N  I  Q  I  I  V  L  T  F  V  *  R  W  E  N  D  H  E  S  M  K  L  R  V  I  L  E  D  H  C  T  Y  I  *  T  S  G  S  *  D  G  L  V  D  V  L  N  G  N  W  N  G  T  G  L  L  *  L  Y  L  F  *  *  T  F  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="28" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135564" stop="135364"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEYVVYIHRKKDWFFNVHLAYLSSFITVVHDFLAWLEKYKGRRVCRIARCNYHSLLNIQIIVLTFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="29" PGL_strand="-" PGL_start="138672" PGL_stop="135659"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="138672" e_stop="138489"/>
            <exon e_start="137893" e_stop="137853"/>
            <exon e_start="137749" e_stop="137651"/>
            <exon e_start="137569" e_stop="137513"/>
            <exon e_start="137391" e_stop="137328"/>
            <exon e_start="137231" e_stop="137025"/>
            <exon e_start="136054" e_stop="135659"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.841" acc_prob="0.941" e_score="0.861"/>
          <exon-intron don_prob="0.638" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.981" e_score="0.980"/>
          <exon-intron don_prob="0.934" acc_prob="0.946" e_score="0.982"/>
          <exon-intron don_prob="0.989" acc_prob="0.747" e_score="1.000"/>
          <exon-intron don_prob="0.633" acc_prob="0.990" e_score="0.971"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.861">
            <gDNA_exon_boundary e_start="138672" e_stop="138489" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.841" acc_prob="0.941">
            <gDNA_intron_boundary i_start="138488" i_stop="137894" i_length="595"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="137893" e_stop="137853" e_length="41"/>
          </exon>
          <intron i_serial="2" don_prob="0.638" acc_prob="0.980">
            <gDNA_intron_boundary i_start="137852" i_stop="137750" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="137749" e_stop="137651" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.981">
            <gDNA_intron_boundary i_start="137650" i_stop="137570" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="137569" e_stop="137513" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.934" acc_prob="0.946">
            <gDNA_intron_boundary i_start="137512" i_stop="137392" i_length="121"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="137391" e_stop="137328" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.747">
            <gDNA_intron_boundary i_start="137327" i_stop="137232" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="0.971">
            <gDNA_exon_boundary e_start="137231" e_stop="137025" e_length="207"/>
          </exon>
          <intron i_serial="6" don_prob="0.633" acc_prob="0.990">
            <gDNA_intron_boundary i_start="137024" i_stop="136055" i_length="970"/>
          </intron>
          <exon e_serial="7" e_score="0.919">
            <gDNA_exon_boundary e_start="136054" e_stop="135659" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138672" stop="138489"/>
              <exon start="137893" stop="137853"/>
              <exon start="137749" stop="137651"/>
              <exon start="137569" stop="137513"/>
              <exon start="137391" stop="137328"/>
              <exon start="137231" stop="137025"/>
              <exon start="136054" stop="135936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138668" stop="138489"/>
              <exon start="137893" stop="137853"/>
              <exon start="137749" stop="137651"/>
              <exon start="137569" stop="137513"/>
              <exon start="137391" stop="137328"/>
              <exon start="137231" stop="137025"/>
              <exon start="136054" stop="135976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138668" stop="138489"/>
              <exon start="137893" stop="137853"/>
              <exon start="137749" stop="137651"/>
              <exon start="137569" stop="137513"/>
              <exon start="137391" stop="137328"/>
              <exon start="137231" stop="137025"/>
              <exon start="136054" stop="136004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138661" stop="138489"/>
              <exon start="137893" stop="137853"/>
              <exon start="137749" stop="137651"/>
              <exon start="137569" stop="137513"/>
              <exon start="137391" stop="137328"/>
              <exon start="137231" stop="137203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138646" stop="138489"/>
              <exon start="137893" stop="137853"/>
              <exon start="137749" stop="137651"/>
              <exon start="137569" stop="137513"/>
              <exon start="137391" stop="137328"/>
              <exon start="137231" stop="137047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137353" stop="137328"/>
              <exon start="137231" stop="137025"/>
              <exon start="136054" stop="135659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="29" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCCCCGTAAATCTCTTTCACACACCTCTTCTCGCCAACATCGCAACGGTTCGCCGGAGAACTGCGGTGGTGCCACCAACTTCTAAAAAACTGTTTACTTGCCCGCTTTGCTCTAACTAACGGCCAATTCGCCGGATTTTCTAGTCAGTTCGCCGGTGTTTGCTTTGGATTGATCAGCAAAAG : GAATTCAAGATGATTGGATCTTTTATCACCAGAGTGCTTGT : GATGGTTTTTGGTTATGCTTATCCAGCTTATGAATGCTTCAAAACTGTGGAGATGAACAAACCAGATATTCAGCAACTCCGCTTTTGGTGCCAATATTG : GATCTTAGTTGCTATGTTGACAGTTTGTGAGAGGTTCGGTGATGCTTTTATTTCATG : GGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAG : GGAACTACATACGTCTATGATGCCTTTTTTAAACCTGTGATATTAAGGCATGAACCTGAGATTGATAAAAGTTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGCCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAG : ACACACAGGCAAAGCAGTAGAGGTCGTCAACCCACAGCATCACTAAATCGCAGGTCATCTGCTTCAGCAACACAAGTACAGGCTGAAGAACAAGCACCCCGTGCTTCTTCTGAATCTTCAAGCGAGGATGAAGCAGATTCAGCAGAAGAGGCAGGATCCTCCAAAGGTCCTCCACCTGCTTCCACTGCCGCTGCAAATGCACAAAAAACAACTCCCTCCAAATCACTGGTTTCAACTGTAGCTGCTTCTCTGAACACACAAAAAGCATCTCCCTCCAAATCCCTTGCTGAAATCACAAAACCTTCCACGTCTGTTGAAACTCGAGTGGTGCAGATTGATTCTGTGCCTCCCTCAGCCACTGAAAGTGTTAACCCTCCTGCTGAGACAGCCTTGGAG</gDNA_template>
            <first_frame> H  P  R  K  S  L  S  H  T  S  S  R  Q  H  R  N  G  S  P  E  N  C  G  G  A  T  N  F  *  K  T  V  Y  L  P  A  L  L  *  L  T  A  N  S  P  D  F  L  V  S  S  P  V  F  A  L  D  *  S  A  K   : G  I  Q  D  D  W  I  F  Y  H  Q  S  A  C  :  D  G  F  W  L  C  L  S  S  L  *  M  L  Q  N  C  G  D  E  Q  T  R  Y  S  A  T  P  L  L  V  P  I  L  :  D  L  S  C  Y  V  D  S  L  *  E  V  R  *  C  F  Y  F  M  :  G  S  N  V  Q  *  S  *  A  G  I  R  H  L  L  V  V  P  Q  N  *   : G  N  Y  I  R  L  *  C  L  F  *  T  C  D  I  K  A  *  T  *  D  *  *  K  F  V  G  V  E  D  Q  S  R  R  Y  V  L  F  I  L  A  E  S  C  *  L  W  P  D  E  G  F  R  H  F  A  V  H  C  F  A  V  K  S  T  S  P  H  S   : D  T  Q  A  K  Q  *  R  S  S  T  H  S  I  T  K  S  Q  V  I  C  F  S  N  T  S  T  G  *  R  T  S  T  P  C  F  F  *  I  F  K  R  G  *  S  R  F  S  R  R  G  R  I  L  Q  R  S  S  T  C  F  H  C  R  C  K  C  T  K  N  N  S  L  Q  I  T  G  F  N  C  S  C  F  S  E  H  T  K  S  I  S  L  Q  I  P  C  *  N  H  K  T  F  H  V  C  *  N  S  S  G  A  D  *  F  C  A  S  L  S  H  *  K  C  *  P  S  C  *  D  S  L  G  </first_frame>
            <second_frame>  T  P  V  N  L  F  H  T  P  L  L  A  N  I  A  T  V  R  R  R  T  A  V  V  P  P  T  S  K  K  L  F  T  C  P  L  C  S  N  *  R  P  I  R  R  I  F  *  S  V  R  R  C  L  L  W  I  D  Q  Q  K  :  E  F  K  M  I  G  S  F  I  T  R  V  L  V :   M  V  F  G  Y  A  Y  P  A  Y  E  C  F  K  T  V  E  M  N  K  P  D  I  Q  Q  L  R  F  W  C  Q  Y  W :   I  L  V  A  M  L  T  V  C  E  R  F  G  D  A  F  I  S  W :   V  P  M  Y  S  E  A  K  L  A  F  V  I  Y  L  W  C  P  K  T  K  :  G  T  T  Y  V  Y  D  A  F  F  K  P  V  I  L  R  H  E  P  E  I  D  K  S  L  L  E  L  R  T  R  A  G  D  M  F  F  L  Y  W  Q  K  A  A  S  Y  G  Q  T  R  V  F  D  I  L  Q  Y  I  A  S  Q  S  N  P  P  P  P  T  Q  :  T  H  R  Q  S  S  R  G  R  Q  P  T  A  S  L  N  R  R  S  S  A  S  A  T  Q  V  Q  A  E  E  Q  A  P  R  A  S  S  E  S  S  S  E  D  E  A  D  S  A  E  E  A  G  S  S  K  G  P  P  P  A  S  T  A  A  A  N  A  Q  K  T  T  P  S  K  S  L  V  S  T  V  A  A  S  L  N  T  Q  K  A  S  P  S  K  S  L  A  E  I  T  K  P  S  T  S  V  E  T  R  V  V  Q  I  D  S  V  P  P  S  A  T  E  S  V  N  P  P  A  E  T  A  L  E </second_frame>
            <third_frame>   P  P  *  I  S  F  T  H  L  F  S  P  T  S  Q  R  F  A  G  E  L  R  W  C  H  Q  L  L  K  N  C  L  L  A  R  F  A  L  T  N  G  Q  F  A  G  F  S  S  Q  F  A  G  V  C  F  G  L  I  S  K  R :   N  S  R  *  L  D  L  L  S  P  E  C  L   : *  W  F  L  V  M  L  I  Q  L  M  N  A  S  K  L  W  R  *  T  N  Q  I  F  S  N  S  A  F  G  A  N  I   : G  S  *  L  L  C  *  Q  F  V  R  G  S  V  M  L  L  F  H   : G  F  Q  C  T  V  K  L  S  W  H  S  S  F  T  C  G  A  P  K  L  R :   E  L  H  T  S  M  M  P  F  L  N  L  *  Y  *  G  M  N  L  R  L  I  K  V  C  W  S  *  G  P  E  Q  E  I  C  S  F  Y  T  G  R  K  L  L  A  M  A  R  R  G  F  S  T  F  C  S  T  L  L  R  S  Q  I  H  L  P  P  L  R :   H  T  G  K  A  V  E  V  V  N  P  Q  H  H  *  I  A  G  H  L  L  Q  Q  H  K  Y  R  L  K  N  K  H  P  V  L  L  L  N  L  Q  A  R  M  K  Q  I  Q  Q  K  R  Q  D  P  P  K  V  L  H  L  L  P  L  P  L  Q  M  H  K  K  Q  L  P  P  N  H  W  F  Q  L  *  L  L  L  *  T  H  K  K  H  L  P  P  N  P  L  L  K  S  Q  N  L  P  R  L  L  K  L  E  W  C  R  L  I  L  C  L  P  Q  P  L  K  V  L  T  L  L  L  R  Q  P  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="29" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138527" stop="138489"/>
                    <exon start="137893" stop="137853"/>
                    <exon start="137749" stop="137651"/>
                    <exon start="137569" stop="137513"/>
                    <exon start="137391" stop="137328"/>
                    <exon start="137231" stop="137025"/>
                    <exon start="136054" stop="135659"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVRRCLLWIDQQKEFKMIGSFITRVLVMVFGYAYPAYECFKTVEMNKPDIQQLRFWCQYWILVAMLTVCERFGDAFISWVPMYSEAKLAFVIYLWCPKTKGTTYVYDAFFKPVILRHEPEIDKSLLELRTRAGDMFFLYWQKAASYGQTRVFDILQYIASQSNPPPPTQTHRQSSRGRQPTASLNRRSSASATQVQAEEQAPRASSESSSEDEADSAEEAGSSKGPPPASTAAANAQKTTPSKSLVSTVAASLNTQKASPSKSLAEITKPSTSVETRVVQIDSVPPSATESVNPPAETALE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="137406" e_stop="137328"/>
            <exon e_start="137231" e_stop="137025"/>
            <exon e_start="136054" e_stop="135659"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.747" e_score="0.975"/>
          <exon-intron don_prob="0.633" acc_prob="0.990" e_score="0.966"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="137406" e_stop="137328" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.747">
            <gDNA_intron_boundary i_start="137327" i_stop="137232" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="137231" e_stop="137025" e_length="207"/>
          </exon>
          <intron i_serial="2" don_prob="0.633" acc_prob="0.990">
            <gDNA_intron_boundary i_start="137024" i_stop="136055" i_length="970"/>
          </intron>
          <exon e_serial="3" e_score="0.966">
            <gDNA_exon_boundary e_start="136054" e_stop="135659" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137406" stop="137328"/>
              <exon start="137231" stop="137025"/>
              <exon start="136054" stop="135673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137353" stop="137328"/>
              <exon start="137231" stop="137025"/>
              <exon start="136054" stop="135659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="29" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTTCTTTTCAAGGGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAG : GGAACTACATACGTCTATGATGCCTTTTTTAAACCTGTGATATTAAGGCATGAACCTGAGATTGATAAAAGTTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGCCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAG : ACACACAGGCAAAGCAGTAGAGGTCGTCAACCCACAGCATCACTAAATCGCAGGTCATCTGCTTCAGCAACACAAGTACAGGCTGAAGAACAAGCACCCCGTGCTTCTTCTGAATCTTCAAGCGAGGATGAAGCAGATTCAGCAGAAGAGGCAGGATCCTCCAAAGGTCCTCCACCTGCTTCCACTGCCGCTGCAAATGCACAAAAAACAACTCCCTCCAAATCACTGGTTTCAACTGTAGCTGCTTCTCTGAACACACAAAAAGCATCTCCCTCCAAATCCCTTGCTGAAATCACAAAACCTTCCACGTCTGTTGAAACTCGAGTGGTGCAGATTGATTCTGTGCCTCCCTCAGCCACTGAAAGTGTTAACCCTCCTGCTGAGACAGCCTTGGAG</gDNA_template>
            <first_frame> L  F  L  F  K  G  S  N  V  Q  *  S  *  A  G  I  R  H  L  L  V  V  P  Q  N  *   : G  N  Y  I  R  L  *  C  L  F  *  T  C  D  I  K  A  *  T  *  D  *  *  K  F  V  G  V  E  D  Q  S  R  R  Y  V  L  F  I  L  A  E  S  C  *  L  W  P  D  E  G  F  R  H  F  A  V  H  C  F  A  V  K  S  T  S  P  H  S   : D  T  Q  A  K  Q  *  R  S  S  T  H  S  I  T  K  S  Q  V  I  C  F  S  N  T  S  T  G  *  R  T  S  T  P  C  F  F  *  I  F  K  R  G  *  S  R  F  S  R  R  G  R  I  L  Q  R  S  S  T  C  F  H  C  R  C  K  C  T  K  N  N  S  L  Q  I  T  G  F  N  C  S  C  F  S  E  H  T  K  S  I  S  L  Q  I  P  C  *  N  H  K  T  F  H  V  C  *  N  S  S  G  A  D  *  F  C  A  S  L  S  H  *  K  C  *  P  S  C  *  D  S  L  G  </first_frame>
            <second_frame>  F  F  F  S  R  V  P  M  Y  S  E  A  K  L  A  F  V  I  Y  L  W  C  P  K  T  K  :  G  T  T  Y  V  Y  D  A  F  F  K  P  V  I  L  R  H  E  P  E  I  D  K  S  L  L  E  L  R  T  R  A  G  D  M  F  F  L  Y  W  Q  K  A  A  S  Y  G  Q  T  R  V  F  D  I  L  Q  Y  I  A  S  Q  S  N  P  P  P  P  T  Q  :  T  H  R  Q  S  S  R  G  R  Q  P  T  A  S  L  N  R  R  S  S  A  S  A  T  Q  V  Q  A  E  E  Q  A  P  R  A  S  S  E  S  S  S  E  D  E  A  D  S  A  E  E  A  G  S  S  K  G  P  P  P  A  S  T  A  A  A  N  A  Q  K  T  T  P  S  K  S  L  V  S  T  V  A  A  S  L  N  T  Q  K  A  S  P  S  K  S  L  A  E  I  T  K  P  S  T  S  V  E  T  R  V  V  Q  I  D  S  V  P  P  S  A  T  E  S  V  N  P  P  A  E  T  A  L  E </second_frame>
            <third_frame>   F  S  F  Q  G  F  Q  C  T  V  K  L  S  W  H  S  S  F  T  C  G  A  P  K  L  R :   E  L  H  T  S  M  M  P  F  L  N  L  *  Y  *  G  M  N  L  R  L  I  K  V  C  W  S  *  G  P  E  Q  E  I  C  S  F  Y  T  G  R  K  L  L  A  M  A  R  R  G  F  S  T  F  C  S  T  L  L  R  S  Q  I  H  L  P  P  L  R :   H  T  G  K  A  V  E  V  V  N  P  Q  H  H  *  I  A  G  H  L  L  Q  Q  H  K  Y  R  L  K  N  K  H  P  V  L  L  L  N  L  Q  A  R  M  K  Q  I  Q  Q  K  R  Q  D  P  P  K  V  L  H  L  L  P  L  P  L  Q  M  H  K  K  Q  L  P  P  N  H  W  F  Q  L  *  L  L  L  *  T  H  K  K  H  L  P  P  N  P  L  L  K  S  Q  N  L  P  R  L  L  K  L  E  W  C  R  L  I  L  C  L  P  Q  P  L  K  V  L  T  L  L  L  R  Q  P  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="29" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="137405" stop="137328"/>
                    <exon start="137231" stop="137025"/>
                    <exon start="136054" stop="135659"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFSRVPMYSEAKLAFVIYLWCPKTKGTTYVYDAFFKPVILRHEPEIDKSLLELRTRAGDMFFLYWQKAASYGQTRVFDILQYIASQSNPPPPTQTHRQSSRGRQPTASLNRRSSASATQVQAEEQAPRASSESSSEDEADSAEEAGSSKGPPPASTAAANAQKTTPSKSLVSTVAASLNTQKASPSKSLAEITKPSTSVETRVVQIDSVPPSATESVNPPAETALE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="137402" e_stop="137328"/>
            <exon e_start="137231" e_stop="136661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.747" e_score="0.960"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="137402" e_stop="137328" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.747">
            <gDNA_intron_boundary i_start="137327" i_stop="137232" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="137231" e_stop="136661" e_length="571"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137402" stop="137328"/>
              <exon start="137231" stop="136661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="29" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTTTCAAGGGTTCCAATGTACAGTGAAGCTAAGCTGGCATTCGTCATTTACTTGTGGTGCCCCAAAACTAAG : GGAACTACATACGTCTATGATGCCTTTTTTAAACCTGTGATATTAAGGCATGAACCTGAGATTGATAAAAGTTTGTTGGAGTTGAGGACCAGAGCAGGAGATATGTTCTTTTTATACTGGCAGAAAGCTGCTAGCTATGGCCAGACGAGGGTTTTCGACATTTTGCAGTACATTGCTTCGCAGTCAAATCCACCTCCCCCCACTCAGGTTGTCGTTAAGATGTGTTTCAGAGTTTATATGCAAGCTCAATTATTTTCAGCATTTCAAACATGCTCTTTACTAAATGATAGTCTTAGCTGTTTGAAATTTGAAGATCGTATTAATTTTAGAATTTGCATGCTTTTGAATCCATACAGCTGTGTTGCAATGCAACTCCACAAAGTCCTTCTCTAATTGTCCGTGCTGATTTGAAGGTTAAGGAGTGATTATTCATAAGAGTCTTAATATATAACACATGCTTGTGAAGCCTTGGGGTTTACTAGATAGGTTGAATCTTTTCAGACTTAGAAATGGGGAGGTTGGGGGTTCAGTGTAGGTGATAGCCAGACTACAGATAATGAACTGTTGCATT</gDNA_template>
            <first_frame> F  F  S  R  V  P  M  Y  S  E  A  K  L  A  F  V  I  Y  L  W  C  P  K  T  K  :  G  T  T  Y  V  Y  D  A  F  F  K  P  V  I  L  R  H  E  P  E  I  D  K  S  L  L  E  L  R  T  R  A  G  D  M  F  F  L  Y  W  Q  K  A  A  S  Y  G  Q  T  R  V  F  D  I  L  Q  Y  I  A  S  Q  S  N  P  P  P  P  T  Q  V  V  V  K  M  C  F  R  V  Y  M  Q  A  Q  L  F  S  A  F  Q  T  C  S  L  L  N  D  S  L  S  C  L  K  F  E  D  R  I  N  F  R  I  C  M  L  L  N  P  Y  S  C  V  A  M  Q  L  H  K  V  L  L  *  L  S  V  L  I  *  R  L  R  S  D  Y  S  *  E  S  *  Y  I  T  H  A  C  E  A  L  G  F  T  R  *  V  E  S  F  Q  T  *  K  W  G  G  W  G  F  S  V  G  D  S  Q  T  T  D  N  E  L  L  H  </first_frame>
            <second_frame>  S  F  Q  G  F  Q  C  T  V  K  L  S  W  H  S  S  F  T  C  G  A  P  K  L  R :   E  L  H  T  S  M  M  P  F  L  N  L  *  Y  *  G  M  N  L  R  L  I  K  V  C  W  S  *  G  P  E  Q  E  I  C  S  F  Y  T  G  R  K  L  L  A  M  A  R  R  G  F  S  T  F  C  S  T  L  L  R  S  Q  I  H  L  P  P  L  R  L  S  L  R  C  V  S  E  F  I  C  K  L  N  Y  F  Q  H  F  K  H  A  L  Y  *  M  I  V  L  A  V  *  N  L  K  I  V  L  I  L  E  F  A  C  F  *  I  H  T  A  V  L  Q  C  N  S  T  K  S  F  S  N  C  P  C  *  F  E  G  *  G  V  I  I  H  K  S  L  N  I  *  H  M  L  V  K  P  W  G  L  L  D  R  L  N  L  F  R  L  R  N  G  E  V  G  G  S  V  *  V  I  A  R  L  Q  I  M  N  C  C  I </second_frame>
            <third_frame>   L  F  K  G  S  N  V  Q  *  S  *  A  G  I  R  H  L  L  V  V  P  Q  N  *   : G  N  Y  I  R  L  *  C  L  F  *  T  C  D  I  K  A  *  T  *  D  *  *  K  F  V  G  V  E  D  Q  S  R  R  Y  V  L  F  I  L  A  E  S  C  *  L  W  P  D  E  G  F  R  H  F  A  V  H  C  F  A  V  K  S  T  S  P  H  S  G  C  R  *  D  V  F  Q  S  L  Y  A  S  S  I  I  F  S  I  S  N  M  L  F  T  K  *  *  S  *  L  F  E  I  *  R  S  Y  *  F  *  N  L  H  A  F  E  S  I  Q  L  C  C  N  A  T  P  Q  S  P  S  L  I  V  R  A  D  L  K  V  K  E  *  L  F  I  R  V  L  I  Y  N  T  C  L  *  S  L  G  V  Y  *  I  G  *  I  F  S  D  L  E  M  G  R  L  G  V  Q  C  R  *  *  P  D  Y  R  *  *  T  V  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="-"/>
                <serials PGL_serial="29" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="137402" stop="137328"/>
                    <exon start="137231" stop="136839"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSRVPMYSEAKLAFVIYLWCPKTKGTTYVYDAFFKPVILRHEPEIDKSLLELRTRAGDMFFLYWQKAASYGQTRVFDILQYIASQSNPPPPTQVVVKMCFRVYMQAQLFSAFQTCSLLNDSLSCLKFEDRINFRICMLLNPYSCVAMQLHKVLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="30" PGL_strand="+" PGL_start="141946" PGL_stop="145029"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="141946" e_stop="142024"/>
            <exon e_start="142116" e_stop="142249"/>
            <exon e_start="142660" e_stop="142732"/>
            <exon e_start="143300" e_stop="143382"/>
            <exon e_start="144117" e_stop="144155"/>
            <exon e_start="144272" e_stop="144342"/>
            <exon e_start="144410" e_stop="144524"/>
            <exon e_start="144601" e_stop="145029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.812" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="141946" e_stop="142024" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="1.000">
            <gDNA_intron_boundary i_start="142025" i_stop="142115" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="142116" e_stop="142249" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.991">
            <gDNA_intron_boundary i_start="142250" i_stop="142659" i_length="410"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="142660" e_stop="142732" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="142733" i_stop="143299" i_length="567"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="143300" e_stop="143382" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.939">
            <gDNA_intron_boundary i_start="143383" i_stop="144116" i_length="734"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="144117" e_stop="144155" e_length="39"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="144156" i_stop="144271" i_length="116"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="144272" e_stop="144342" e_length="71"/>
          </exon>
          <intron i_serial="6" don_prob="0.908" acc_prob="0.812">
            <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="144410" e_stop="144524" e_length="115"/>
          </exon>
          <intron i_serial="7" don_prob="0.865" acc_prob="0.982">
            <gDNA_intron_boundary i_start="144525" i_stop="144600" i_length="76"/>
          </intron>
          <exon e_serial="8" e_score="0.941">
            <gDNA_exon_boundary e_start="144601" e_stop="145029" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141946" stop="142024"/>
              <exon start="142116" stop="142249"/>
              <exon start="142660" stop="142732"/>
              <exon start="143300" stop="143382"/>
              <exon start="144117" stop="144155"/>
              <exon start="144272" stop="144331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141966" stop="142024"/>
              <exon start="142116" stop="142249"/>
              <exon start="142660" stop="142732"/>
              <exon start="143300" stop="143382"/>
              <exon start="144117" stop="144155"/>
              <exon start="144272" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="144905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141966" stop="142024"/>
              <exon start="142116" stop="142249"/>
              <exon start="142660" stop="142732"/>
              <exon start="143300" stop="143382"/>
              <exon start="144117" stop="144155"/>
              <exon start="144272" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="144871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141968" stop="142024"/>
              <exon start="142116" stop="142249"/>
              <exon start="142660" stop="142732"/>
              <exon start="143300" stop="143382"/>
              <exon start="144117" stop="144155"/>
              <exon start="144272" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="144965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141971" stop="142024"/>
              <exon start="142116" stop="142249"/>
              <exon start="142660" stop="142732"/>
              <exon start="143300" stop="143382"/>
              <exon start="144117" stop="144155"/>
              <exon start="144272" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="144736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141971" stop="142024"/>
              <exon start="142116" stop="142249"/>
              <exon start="142660" stop="142732"/>
              <exon start="143300" stop="143382"/>
              <exon start="144117" stop="144155"/>
              <exon start="144272" stop="144342"/>
              <exon start="144410" stop="144469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141985" stop="142024"/>
              <exon start="142116" stop="142249"/>
              <exon start="142660" stop="142732"/>
              <exon start="143300" stop="143382"/>
              <exon start="144117" stop="144155"/>
              <exon start="144272" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="144746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141986" stop="142024"/>
              <exon start="142116" stop="142249"/>
              <exon start="142660" stop="142695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142005" stop="142024"/>
              <exon start="142116" stop="142249"/>
              <exon start="142660" stop="142732"/>
              <exon start="143300" stop="143382"/>
              <exon start="144117" stop="144155"/>
              <exon start="144272" stop="144342"/>
              <exon start="144410" stop="144508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142155" stop="142249"/>
              <exon start="142660" stop="142732"/>
              <exon start="143300" stop="143382"/>
              <exon start="144117" stop="144147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142687" stop="142732"/>
              <exon start="143300" stop="143382"/>
              <exon start="144117" stop="144155"/>
              <exon start="144272" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="144830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142696" stop="142732"/>
              <exon start="143300" stop="143382"/>
              <exon start="144117" stop="144155"/>
              <exon start="144272" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="145025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144307" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="144974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144307" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="144974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144415" stop="144524"/>
              <exon start="144601" stop="144974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144647" stop="144944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144648" stop="145029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293623" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="30" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCACTCTTTTCAATTTCAGAGAAACTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACA : AAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG : ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAG : GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG : ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG : GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA : ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT : AACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAAATTCTAGCTCATATATTGTATCATACATTTTACAGTTCTAACATATAATTTGGTT</gDNA_template>
            <first_frame> L  T  L  F  N  F  R  E  T  A  M  E  S  A  L  L  S  A  S  R  F  T  T  A  L  H   : K  A  E  R  E  V  V  G  G  P  V  A  V  R  K  L  Q  S  S  F  Y  G  K  E  I  N  S  H  T  L  F  T  K  N  F  K  K  I  N  L  T  I  T  S  V  :  M  R  K  K  L  I  K  K  E  T  V  V  P  D  P  D  Y  R  I  P  I  V  L  L   : G  L  S  G  G  L  F  Y  V  E  N  L  P  A  A  V  P  I  G  L  L  G  L  L  L  L  F  Q  :  T  T  R  V  R  F  V  F  D  D  E  A  L  :  E  V  K  V  G  E  Q  L  E  E  S  G  E  N  V  F  V  G  G  K  N  R  W  K :   Y  S  S  F  V  N  W  E  L  W  W  P  N  F  P  I  L  V  Y  F  K  E  K  Q  T  K  P  E  G  Q  I  H  F  F  P  V  I  F  :  N  G  R  Q  L  Y  D  A  M  V  E  R  C  G  P  S  K  T  S  G  P  K  *  C  N  M  S  S  R  E  K  T  N  M  S  Q  T  N  H  T  I  R  I  C  G  K  G  M  K  L  N  E  V  K  E  L  V  S  *  V  T  R  C  G  F  I  N  *  C  I  F  P  F  M  F  L  H  V  C  K  I  T  K  I  N  Y  Q  S  E  Y  V  S  Q  L  T  K  S  C  I  I  C  I  T  I  T  V  *  K  A  V  T  G  C  K  L  Y  V  F  T  F  G  M  C  Y  K  F  *  L  I  Y  C  I  I  H  F  T  V  L  T  Y  N  L  V </first_frame>
            <second_frame>  S  L  F  S  I  S  E  K  L  Q  W  R  A  L  F  S  L  L  P  A  S  L  L  L  C  T  :  K  Q  K  E  K  *  *  V  D  L  W  L  *  G  N  Y  R  A  H  S  M  A  K  R  L  I  V  I  L  F  S  L  K  T  S  K  K  S  I  S  L  S  P  Q  * :   C  G  R  N  *  *  R  R  R  L  L  F  L  I  Q  I  T  E  F  L  L  S  F  *  :  G  Y  L  V  V  Y  F  M  W  K  I  Y  P  Q  Q  F  L  L  V  F  L  D  Y  S  C  Y  S  R :   Q  Q  E  *  D  L  S  L  M  M  R  L  W :   R  *  K  L  G  S  N  S  R  S  Q  V  K  M  F  S  W  V  E  R  T  A  G   : N  I  L  H  L  *  T  G  S  Y  G  G  Q  T  F  R  F  W  F  I  L  K  R  N  R  Q  N  P  R  D  K  Y  T  F  S  Q  *  F  L :   T  G  G  N  C  T  M  L  W  W  R  D  V  A  L  Q  K  L  A  D  Q  S  S  A  T  *  A  P  G  R  R  R  I  *  A  R  Q  T  I  Q  S  E  F  V  A  K  V  *  S  S  T  R  L  R  N  S  S  V  E  S  Q  D  V  V  S  S  I  N  V  Y  S  L  S  C  F  Y  T  S  V  K  S  Q  R  *  T  I  N  L  S  M  C  H  N  S  Q  N  H  V  L  Y  V  S  P  L  L  Y  E  R  R  *  L  D  A  N  Y  M  Y  S  H  L  E  C  V  T  N  S  S  S  Y  I  V  S  Y  I  L  Q  F  *  H  I  I  W   </second_frame>
            <third_frame>   H  S  F  Q  F  Q  R  N  C  N  G  E  R  S  S  L  C  F  P  L  H  Y  C  S  A  Q :   S  R  K  R  S  S  R  W  T  C  G  C  E  E  I  T  E  L  I  L  W  Q  R  D  *  *  S  Y  S  F  H  *  K  L  Q  K  N  Q  S  H  Y  H  L  S   : D  A  E  E  T  D  K  E  G  D  C  C  S  *  S  R  L  P  N  S  Y  C  P  S  R :   V  I  W  W  F  I  L  C  G  K  S  T  R  S  S  S  Y  W  S  S  W  I  T  P  V  I  P   : D  N  K  S  E  I  C  L  *  *  *  G  S   : G  G  E  S  W  G  A  T  R  G  V  R  *  K  C  F  R  G  W  K  E  P  L  E  :  I  F  F  I  C  E  L  G  A  M  V  A  K  L  S  D  F  G  L  F  *  R  E  T  D  K  T  R  G  T  N  T  L  F  P  S  D  F   : *  R  E  A  T  V  R  C  Y  G  G  E  M  W  P  F  K  N  *  R  T  K  V  V  Q  H  E  L  Q  G  E  D  E  Y  E  P  D  K  P  Y  N  Q  N  L  W  Q  R  Y  E  A  Q  R  G  *  G  T  R  Q  L  S  H  K  M  W  F  H  Q  L  M  Y  I  P  F  H  V  F  T  R  L  *  N  H  K  D  K  L  S  I  *  V  C  V  T  T  H  K  I  M  Y  Y  M  Y  H  H  Y  C  M  K  G  G  N  W  M  Q  T  I  C  I  H  I  W  N  V  L  Q  I  L  A  H  I  L  Y  H  T  F  Y  S  S  N  I  *  F  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="30" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="141946" stop="142024"/>
                    <exon start="142116" stop="142249"/>
                    <exon start="142660" stop="142732"/>
                    <exon start="143300" stop="143382"/>
                    <exon start="144117" stop="144155"/>
                    <exon start="144272" stop="144342"/>
                    <exon start="144410" stop="144524"/>
                    <exon start="144601" stop="144669"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTLFNFRETAMESALLSASRFTTALHKAEREVVGGPVAVRKLQSSFYGKEINSHTLFTKNFKKINLTITSVMRKKLIKKETVVPDPDYRIPIVLLGLSGGLFYVENLPAAVPIGLLGLLLLFQTTRVRFVFDDEALEVKVGEQLEESGENVFVGGKNRWKYSSFVNWELWWPNFPILVYFKEKQTKPEGQIHFFPVIFNGRQLYDAMVERCGPSKTSGPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="141983" e_stop="142249"/>
            <exon e_start="142660" e_stop="142732"/>
            <exon e_start="143300" e_stop="143382"/>
            <exon e_start="144117" e_stop="144155"/>
            <exon e_start="144272" e_stop="144342"/>
            <exon e_start="144410" e_stop="144524"/>
            <exon e_start="144601" e_stop="145029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.991" e_score="0.978"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.812" e_score="0.986"/>
          <exon-intron don_prob="0.865" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="141983" e_stop="142249" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.991">
            <gDNA_intron_boundary i_start="142250" i_stop="142659" i_length="410"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="142660" e_stop="142732" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="142733" i_stop="143299" i_length="567"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="143300" e_stop="143382" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.939">
            <gDNA_intron_boundary i_start="143383" i_stop="144116" i_length="734"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="144117" e_stop="144155" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="144156" i_stop="144271" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="144272" e_stop="144342" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.908" acc_prob="0.812">
            <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="144410" e_stop="144524" e_length="115"/>
          </exon>
          <intron i_serial="6" don_prob="0.865" acc_prob="0.982">
            <gDNA_intron_boundary i_start="144525" i_stop="144600" i_length="76"/>
          </intron>
          <exon e_serial="7" e_score="0.941">
            <gDNA_exon_boundary e_start="144601" e_stop="145029" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141983" stop="142249"/>
              <exon start="142660" stop="142732"/>
              <exon start="143300" stop="143382"/>
              <exon start="144117" stop="144155"/>
              <exon start="144272" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="144623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141984" stop="142249"/>
              <exon start="142660" stop="142732"/>
              <exon start="143300" stop="143382"/>
              <exon start="144117" stop="144134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142155" stop="142249"/>
              <exon start="142660" stop="142732"/>
              <exon start="143300" stop="143382"/>
              <exon start="144117" stop="144147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142687" stop="142732"/>
              <exon start="143300" stop="143382"/>
              <exon start="144117" stop="144155"/>
              <exon start="144272" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="144830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142696" stop="142732"/>
              <exon start="143300" stop="143382"/>
              <exon start="144117" stop="144155"/>
              <exon start="144272" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="145025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144307" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="144974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144307" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="144974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144415" stop="144524"/>
              <exon start="144601" stop="144974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144647" stop="144944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144648" stop="145029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293623" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="30" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG : ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAG : GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG : ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG : GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA : ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT : AACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAAATTCTAGCTCATATATTGTATCATACATTTTACAGTTCTAACATATAATTTGGTT</gDNA_template>
            <first_frame> A  L  F  S  L  L  P  A  S  L  L  L  C  T  V  E  Q  N  F  C  K  I  K  L  C  *  A  Y  L  K  I  F  L  Y  C  K  L  I  F  V  L  Y  L  S  E  A  E  R  E  V  V  G  G  P  V  A  V  R  K  L  Q  S  S  F  Y  G  K  E  I  N  S  H  T  L  F  T  K  N  F  K  K  I  N  L  T  I  T  S  V  :  M  R  K  K  L  I  K  K  E  T  V  V  P  D  P  D  Y  R  I  P  I  V  L  L   : G  L  S  G  G  L  F  Y  V  E  N  L  P  A  A  V  P  I  G  L  L  G  L  L  L  L  F  Q  :  T  T  R  V  R  F  V  F  D  D  E  A  L  :  E  V  K  V  G  E  Q  L  E  E  S  G  E  N  V  F  V  G  G  K  N  R  W  K :   Y  S  S  F  V  N  W  E  L  W  W  P  N  F  P  I  L  V  Y  F  K  E  K  Q  T  K  P  E  G  Q  I  H  F  F  P  V  I  F  :  N  G  R  Q  L  Y  D  A  M  V  E  R  C  G  P  S  K  T  S  G  P  K  *  C  N  M  S  S  R  E  K  T  N  M  S  Q  T  N  H  T  I  R  I  C  G  K  G  M  K  L  N  E  V  K  E  L  V  S  *  V  T  R  C  G  F  I  N  *  C  I  F  P  F  M  F  L  H  V  C  K  I  T  K  I  N  Y  Q  S  E  Y  V  S  Q  L  T  K  S  C  I  I  C  I  T  I  T  V  *  K  A  V  T  G  C  K  L  Y  V  F  T  F  G  M  C  Y  K  F  *  L  I  Y  C  I  I  H  F  T  V  L  T  Y  N  L  V </first_frame>
            <second_frame>  R  S  S  L  C  F  P  L  H  Y  C  S  A  Q  L  S  K  I  S  V  K  L  N  F  V  K  L  I  L  K  F  S  C  I  V  N  *  F  L  F  C  I  Y  Q  K  Q  K  E  K  *  *  V  D  L  W  L  *  G  N  Y  R  A  H  S  M  A  K  R  L  I  V  I  L  F  S  L  K  T  S  K  K  S  I  S  L  S  P  Q  * :   C  G  R  N  *  *  R  R  R  L  L  F  L  I  Q  I  T  E  F  L  L  S  F  *  :  G  Y  L  V  V  Y  F  M  W  K  I  Y  P  Q  Q  F  L  L  V  F  L  D  Y  S  C  Y  S  R :   Q  Q  E  *  D  L  S  L  M  M  R  L  W :   R  *  K  L  G  S  N  S  R  S  Q  V  K  M  F  S  W  V  E  R  T  A  G   : N  I  L  H  L  *  T  G  S  Y  G  G  Q  T  F  R  F  W  F  I  L  K  R  N  R  Q  N  P  R  D  K  Y  T  F  S  Q  *  F  L :   T  G  G  N  C  T  M  L  W  W  R  D  V  A  L  Q  K  L  A  D  Q  S  S  A  T  *  A  P  G  R  R  R  I  *  A  R  Q  T  I  Q  S  E  F  V  A  K  V  *  S  S  T  R  L  R  N  S  S  V  E  S  Q  D  V  V  S  S  I  N  V  Y  S  L  S  C  F  Y  T  S  V  K  S  Q  R  *  T  I  N  L  S  M  C  H  N  S  Q  N  H  V  L  Y  V  S  P  L  L  Y  E  R  R  *  L  D  A  N  Y  M  Y  S  H  L  E  C  V  T  N  S  S  S  Y  I  V  S  Y  I  L  Q  F  *  H  I  I  W   </second_frame>
            <third_frame>   A  L  L  S  A  S  R  F  T  T  A  L  H  S  *  A  K  F  L  *  N  *  T  L  L  S  L  S  *  N  F  L  V  L  *  T  N  F  C  F  V  F  I  R  S  R  K  R  S  S  R  W  T  C  G  C  E  E  I  T  E  L  I  L  W  Q  R  D  *  *  S  Y  S  F  H  *  K  L  Q  K  N  Q  S  H  Y  H  L  S   : D  A  E  E  T  D  K  E  G  D  C  C  S  *  S  R  L  P  N  S  Y  C  P  S  R :   V  I  W  W  F  I  L  C  G  K  S  T  R  S  S  S  Y  W  S  S  W  I  T  P  V  I  P   : D  N  K  S  E  I  C  L  *  *  *  G  S   : G  G  E  S  W  G  A  T  R  G  V  R  *  K  C  F  R  G  W  K  E  P  L  E  :  I  F  F  I  C  E  L  G  A  M  V  A  K  L  S  D  F  G  L  F  *  R  E  T  D  K  T  R  G  T  N  T  L  F  P  S  D  F   : *  R  E  A  T  V  R  C  Y  G  G  E  M  W  P  F  K  N  *  R  T  K  V  V  Q  H  E  L  Q  G  E  D  E  Y  E  P  D  K  P  Y  N  Q  N  L  W  Q  R  Y  E  A  Q  R  G  *  G  T  R  Q  L  S  H  K  M  W  F  H  Q  L  M  Y  I  P  F  H  V  F  T  R  L  *  N  H  K  D  K  L  S  I  *  V  C  V  T  T  H  K  I  M  Y  Y  M  Y  H  H  Y  C  M  K  G  G  N  W  M  Q  T  I  C  I  H  I  W  N  V  L  Q  I  L  A  H  I  L  Y  H  T  F  Y  S  S  N  I  *  F  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="30" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142061" stop="142249"/>
                    <exon start="142660" stop="142732"/>
                    <exon start="143300" stop="143382"/>
                    <exon start="144117" stop="144155"/>
                    <exon start="144272" stop="144342"/>
                    <exon start="144410" stop="144524"/>
                    <exon start="144601" stop="144669"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYLKIFLYCKLIFVLYLSEAEREVVGGPVAVRKLQSSFYGKEINSHTLFTKNFKKINLTITSVMRKKLIKKETVVPDPDYRIPIVLLGLSGGLFYVENLPAAVPIGLLGLLLLFQTTRVRFVFDDEALEVKVGEQLEESGENVFVGGKNRWKYSSFVNWELWWPNFPILVYFKEKQTKPEGQIHFFPVIFNGRQLYDAMVERCGPSKTSGPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="142423" e_stop="142426"/>
            <exon e_start="142660" e_stop="142732"/>
            <exon e_start="143300" e_stop="143382"/>
            <exon e_start="144117" e_stop="144155"/>
            <exon e_start="144272" e_stop="144342"/>
            <exon e_start="144410" e_stop="144524"/>
            <exon e_start="144601" e_stop="145029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.991" e_score="0.750"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.986" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.812" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="142423" e_stop="142426" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.991">
            <gDNA_intron_boundary i_start="142427" i_stop="142659" i_length="233"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="142660" e_stop="142732" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="142733" i_stop="143299" i_length="567"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="143300" e_stop="143382" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.939">
            <gDNA_intron_boundary i_start="143383" i_stop="144116" i_length="734"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="144117" e_stop="144155" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="144156" i_stop="144271" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="144272" e_stop="144342" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.908" acc_prob="0.812">
            <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="144410" e_stop="144524" e_length="115"/>
          </exon>
          <intron i_serial="6" don_prob="0.865" acc_prob="0.982">
            <gDNA_intron_boundary i_start="144525" i_stop="144600" i_length="76"/>
          </intron>
          <exon e_serial="7" e_score="0.941">
            <gDNA_exon_boundary e_start="144601" e_stop="145029" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142423" stop="142426"/>
              <exon start="142660" stop="142732"/>
              <exon start="143300" stop="143382"/>
              <exon start="144117" stop="144155"/>
              <exon start="144272" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="144944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433778" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142687" stop="142732"/>
              <exon start="143300" stop="143382"/>
              <exon start="144117" stop="144155"/>
              <exon start="144272" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="144830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142696" stop="142732"/>
              <exon start="143300" stop="143382"/>
              <exon start="144117" stop="144155"/>
              <exon start="144272" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="145025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144307" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="144974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144307" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="144974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144415" stop="144524"/>
              <exon start="144601" stop="144974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144647" stop="144944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144648" stop="145029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293623" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="30" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAG : ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAG : GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG : ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG : GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA : ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT : AACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAAATTCTAGCTCATATATTGTATCATACATTTTACAGTTCTAACATATAATTTGGTT</gDNA_template>
            <first_frame> R   : D  A  E  E  T  D  K  E  G  D  C  C  S  *  S  R  L  P  N  S  Y  C  P  S  R :   V  I  W  W  F  I  L  C  G  K  S  T  R  S  S  S  Y  W  S  S  W  I  T  P  V  I  P   : D  N  K  S  E  I  C  L  *  *  *  G  S   : G  G  E  S  W  G  A  T  R  G  V  R  *  K  C  F  R  G  W  K  E  P  L  E  :  I  F  F  I  C  E  L  G  A  M  V  A  K  L  S  D  F  G  L  F  *  R  E  T  D  K  T  R  G  T  N  T  L  F  P  S  D  F   : *  R  E  A  T  V  R  C  Y  G  G  E  M  W  P  F  K  N  *  R  T  K  V  V  Q  H  E  L  Q  G  E  D  E  Y  E  P  D  K  P  Y  N  Q  N  L  W  Q  R  Y  E  A  Q  R  G  *  G  T  R  Q  L  S  H  K  M  W  F  H  Q  L  M  Y  I  P  F  H  V  F  T  R  L  *  N  H  K  D  K  L  S  I  *  V  C  V  T  T  H  K  I  M  Y  Y  M  Y  H  H  Y  C  M  K  G  G  N  W  M  Q  T  I  C  I  H  I  W  N  V  L  Q  I  L  A  H  I  L  Y  H  T  F  Y  S  S  N  I  *  F  G  </first_frame>
            <second_frame>  E  :  M  R  K  K  L  I  K  K  E  T  V  V  P  D  P  D  Y  R  I  P  I  V  L  L   : G  L  S  G  G  L  F  Y  V  E  N  L  P  A  A  V  P  I  G  L  L  G  L  L  L  L  F  Q  :  T  T  R  V  R  F  V  F  D  D  E  A  L  :  E  V  K  V  G  E  Q  L  E  E  S  G  E  N  V  F  V  G  G  K  N  R  W  K :   Y  S  S  F  V  N  W  E  L  W  W  P  N  F  P  I  L  V  Y  F  K  E  K  Q  T  K  P  E  G  Q  I  H  F  F  P  V  I  F  :  N  G  R  Q  L  Y  D  A  M  V  E  R  C  G  P  S  K  T  S  G  P  K  *  C  N  M  S  S  R  E  K  T  N  M  S  Q  T  N  H  T  I  R  I  C  G  K  G  M  K  L  N  E  V  K  E  L  V  S  *  V  T  R  C  G  F  I  N  *  C  I  F  P  F  M  F  L  H  V  C  K  I  T  K  I  N  Y  Q  S  E  Y  V  S  Q  L  T  K  S  C  I  I  C  I  T  I  T  V  *  K  A  V  T  G  C  K  L  Y  V  F  T  F  G  M  C  Y  K  F  *  L  I  Y  C  I  I  H  F  T  V  L  T  Y  N  L  V </second_frame>
            <third_frame>   R :   C  G  R  N  *  *  R  R  R  L  L  F  L  I  Q  I  T  E  F  L  L  S  F  *  :  G  Y  L  V  V  Y  F  M  W  K  I  Y  P  Q  Q  F  L  L  V  F  L  D  Y  S  C  Y  S  R :   Q  Q  E  *  D  L  S  L  M  M  R  L  W :   R  *  K  L  G  S  N  S  R  S  Q  V  K  M  F  S  W  V  E  R  T  A  G   : N  I  L  H  L  *  T  G  S  Y  G  G  Q  T  F  R  F  W  F  I  L  K  R  N  R  Q  N  P  R  D  K  Y  T  F  S  Q  *  F  L :   T  G  G  N  C  T  M  L  W  W  R  D  V  A  L  Q  K  L  A  D  Q  S  S  A  T  *  A  P  G  R  R  R  I  *  A  R  Q  T  I  Q  S  E  F  V  A  K  V  *  S  S  T  R  L  R  N  S  S  V  E  S  Q  D  V  V  S  S  I  N  V  Y  S  L  S  C  F  Y  T  S  V  K  S  Q  R  *  T  I  N  L  S  M  C  H  N  S  Q  N  H  V  L  Y  V  S  P  L  L  Y  E  R  R  *  L  D  A  N  Y  M  Y  S  H  L  E  C  V  T  N  S  S  S  Y  I  V  S  Y  I  L  Q  F  *  H  I  I  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="30" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142424" stop="142426"/>
                    <exon start="142660" stop="142732"/>
                    <exon start="143300" stop="143382"/>
                    <exon start="144117" stop="144155"/>
                    <exon start="144272" stop="144342"/>
                    <exon start="144410" stop="144524"/>
                    <exon start="144601" stop="144669"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMRKKLIKKETVVPDPDYRIPIVLLGLSGGLFYVENLPAAVPIGLLGLLLLFQTTRVRFVFDDEALEVKVGEQLEESGENVFVGGKNRWKYSSFVNWELWWPNFPILVYFKEKQTKPEGQIHFFPVIFNGRQLYDAMVERCGPSKTSGPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="143975" e_stop="144155"/>
            <exon e_start="144272" e_stop="144342"/>
            <exon e_start="144410" e_stop="144524"/>
            <exon e_start="144601" e_stop="145029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="0.978"/>
          <exon-intron don_prob="0.908" acc_prob="0.812" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="143975" e_stop="144155" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="144156" i_stop="144271" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="144272" e_stop="144342" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.908" acc_prob="0.812">
            <gDNA_intron_boundary i_start="144343" i_stop="144409" i_length="67"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="144410" e_stop="144524" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.865" acc_prob="0.982">
            <gDNA_intron_boundary i_start="144525" i_stop="144600" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="0.979">
            <gDNA_exon_boundary e_start="144601" e_stop="145029" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143975" stop="144155"/>
              <exon start="144272" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="144944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143975" stop="144155"/>
              <exon start="144272" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="144863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144307" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="144974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144307" stop="144342"/>
              <exon start="144410" stop="144524"/>
              <exon start="144601" stop="144974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144415" stop="144524"/>
              <exon start="144601" stop="144974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144647" stop="144944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144648" stop="145029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293623" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="30" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG : GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA : ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT : AACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAAATTCTAGCTCATATATTGTATCATACATTTTACAGTTCTAACATATAATTTGGTT</gDNA_template>
            <first_frame> G  A  S  S  I  A  P  D  L  V  T  D  H  L  F  I  L  L  I  I  L  I  S  L  I  S  F  I  H  L  A  S  I  R  P  A  F  L  I  D  S  H  R  F  S  L  A  D  N  K  S  E  I  C  L  *  *  *  G  S   : G  G  E  S  W  G  A  T  R  G  V  R  *  K  C  F  R  G  W  K  E  P  L  E  :  I  F  F  I  C  E  L  G  A  M  V  A  K  L  S  D  F  G  L  F  *  R  E  T  D  K  T  R  G  T  N  T  L  F  P  S  D  F   : *  R  E  A  T  V  R  C  Y  G  G  E  M  W  P  F  K  N  *  R  T  K  V  V  Q  H  E  L  Q  G  E  D  E  Y  E  P  D  K  P  Y  N  Q  N  L  W  Q  R  Y  E  A  Q  R  G  *  G  T  R  Q  L  S  H  K  M  W  F  H  Q  L  M  Y  I  P  F  H  V  F  T  R  L  *  N  H  K  D  K  L  S  I  *  V  C  V  T  T  H  K  I  M  Y  Y  M  Y  H  H  Y  C  M  K  G  G  N  W  M  Q  T  I  C  I  H  I  W  N  V  L  Q  I  L  A  H  I  L  Y  H  T  F  Y  S  S  N  I  *  F  G  </first_frame>
            <second_frame>  E  L  L  L  L  H  R  I  *  *  Q  I  I  C  S  F  C  L  L  S  *  F  P  *  S  R  S  F  I  *  H  L  S  G  R  H  S  L  L  I  H  I  V  F  R  L  Q  T  T  R  V  R  F  V  F  D  D  E  A  L  :  E  V  K  V  G  E  Q  L  E  E  S  G  E  N  V  F  V  G  G  K  N  R  W  K :   Y  S  S  F  V  N  W  E  L  W  W  P  N  F  P  I  L  V  Y  F  K  E  K  Q  T  K  P  E  G  Q  I  H  F  F  P  V  I  F  :  N  G  R  Q  L  Y  D  A  M  V  E  R  C  G  P  S  K  T  S  G  P  K  *  C  N  M  S  S  R  E  K  T  N  M  S  Q  T  N  H  T  I  R  I  C  G  K  G  M  K  L  N  E  V  K  E  L  V  S  *  V  T  R  C  G  F  I  N  *  C  I  F  P  F  M  F  L  H  V  C  K  I  T  K  I  N  Y  Q  S  E  Y  V  S  Q  L  T  K  S  C  I  I  C  I  T  I  T  V  *  K  A  V  T  G  C  K  L  Y  V  F  T  F  G  M  C  Y  K  F  *  L  I  Y  C  I  I  H  F  T  V  L  T  Y  N  L  V </second_frame>
            <third_frame>   S  F  F  Y  C  T  G  S  S  N  R  S  S  V  H  S  A  Y  Y  L  N  F  L  D  L  V  H  S  F  S  I  Y  Q  A  G  I  P  Y  *  F  T  S  F  F  A  C  R  Q  Q  E  *  D  L  S  L  M  M  R  L  W :   R  *  K  L  G  S  N  S  R  S  Q  V  K  M  F  S  W  V  E  R  T  A  G   : N  I  L  H  L  *  T  G  S  Y  G  G  Q  T  F  R  F  W  F  I  L  K  R  N  R  Q  N  P  R  D  K  Y  T  F  S  Q  *  F  L :   T  G  G  N  C  T  M  L  W  W  R  D  V  A  L  Q  K  L  A  D  Q  S  S  A  T  *  A  P  G  R  R  R  I  *  A  R  Q  T  I  Q  S  E  F  V  A  K  V  *  S  S  T  R  L  R  N  S  S  V  E  S  Q  D  V  V  S  S  I  N  V  Y  S  L  S  C  F  Y  T  S  V  K  S  Q  R  *  T  I  N  L  S  M  C  H  N  S  Q  N  H  V  L  Y  V  S  P  L  L  Y  E  R  R  *  L  D  A  N  Y  M  Y  S  H  L  E  C  V  T  N  S  S  S  Y  I  V  S  Y  I  L  Q  F  *  H  I  I  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="30" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="144066" stop="144155"/>
                    <exon start="144272" stop="144342"/>
                    <exon start="144410" stop="144524"/>
                    <exon start="144601" stop="144669"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLSGRHSLLIHIVFRLQTTRVRFVFDDEALEVKVGEQLEESGENVFVGGKNRWKYSSFVNWELWWPNFPILVYFKEKQTKPEGQIHFFPVIFNGRQLYDAMVERCGPSKTSGPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="31" PGL_strand="+" PGL_start="145620" PGL_stop="148637"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="145651" e_stop="145878"/>
            <exon e_start="146005" e_stop="146088"/>
            <exon e_start="146388" e_stop="146439"/>
            <exon e_start="148035" e_stop="148191"/>
            <exon e_start="148342" e_stop="148637"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.648" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="145651" e_stop="145878" e_length="228"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="145879" i_stop="146004" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="146005" e_stop="146088" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.957">
            <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="146388" e_stop="146439" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.945">
            <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="148035" e_stop="148191" e_length="157"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.648">
            <gDNA_intron_boundary i_start="148192" i_stop="148341" i_length="150"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="148342" e_stop="148637" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145651" stop="145878"/>
              <exon start="146005" stop="146088"/>
              <exon start="146388" stop="146439"/>
              <exon start="148035" stop="148191"/>
              <exon start="148342" stop="148615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371646" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145663" stop="145878"/>
              <exon start="146005" stop="146088"/>
              <exon start="146388" stop="146439"/>
              <exon start="148035" stop="148191"/>
              <exon start="148342" stop="148389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145663" stop="145878"/>
              <exon start="146005" stop="146083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145666" stop="145878"/>
              <exon start="146005" stop="146088"/>
              <exon start="146388" stop="146439"/>
              <exon start="148035" stop="148191"/>
              <exon start="148342" stop="148445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145666" stop="145876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145671" stop="145878"/>
              <exon start="146005" stop="146088"/>
              <exon start="146388" stop="146439"/>
              <exon start="148035" stop="148191"/>
              <exon start="148342" stop="148576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145680" stop="145878"/>
              <exon start="146005" stop="146088"/>
              <exon start="146388" stop="146439"/>
              <exon start="148035" stop="148191"/>
              <exon start="148342" stop="148637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145682" stop="145878"/>
              <exon start="146005" stop="146088"/>
              <exon start="146388" stop="146439"/>
              <exon start="148035" stop="148191"/>
              <exon start="148342" stop="148458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145682" stop="145878"/>
              <exon start="146005" stop="146088"/>
              <exon start="146388" stop="146439"/>
              <exon start="148035" stop="148105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145682" stop="145878"/>
              <exon start="146005" stop="146088"/>
              <exon start="146388" stop="146439"/>
              <exon start="148035" stop="148088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145729" stop="145878"/>
              <exon start="146005" stop="146088"/>
              <exon start="146388" stop="146439"/>
              <exon start="148035" stop="148191"/>
              <exon start="148342" stop="148615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371647" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145865" stop="145878"/>
              <exon start="146005" stop="146088"/>
              <exon start="146388" stop="146439"/>
              <exon start="148035" stop="148191"/>
              <exon start="148342" stop="148485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146023" stop="146088"/>
              <exon start="146388" stop="146439"/>
              <exon start="148035" stop="148191"/>
              <exon start="148342" stop="148540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430692" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="31" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTGATTCTGATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG : GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT : GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC : AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG : GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCTAGATGTTGTAAATGAAATTGAGCACCTGTGTGTATTGCATTTTAAAAAA</gDNA_template>
            <first_frame> F  S  D  S  D  D  S  K  I  H  S  *  T  K  H  *  K  K  R  E  E  M  L  T  A  P  S  L  S  R  F  K  S  P  F  I  S  S  P  L  K  L  P  T  L  S  S  S  F  F  T  Q  K  F  H  Q  T  C  R  R  R  N  S  Y  P  C  I  K  A  V  D  L  D  Q  N  T  :  V  I  A  I  T  V  G  V  L  S  V  A  I  G  V  G  I  P  V  F  Y  E  T  Q  I  D  N  A  :  A  K  R  E  N  T  Q  P  C  F  P  C  T  G  T  G  A   : Q  K  C  R  F  C  M  G  T  G  S  V  T  V  E  L  G  G  G  E  T  E  V  S  R  C  I  N  C  D  G  A  G  G  L  T  C  T  T  C  Q  G  S  G  I  Q  P  R  Y  L  D  R  R :   E  F  K  D  D  D  *  I  W  K  N  T  Q  H  G  C  H  N  L  F  I  V  *  K  T  C  H  F  D  L  N  I  L  T  Q  N  C  V  K  F  I  Y  V  H  P  L  S  L  P  F  S  V  F  T  Y  S  F  H  L  L  F  L  H  V  I  F  N  K  L  S  N  T  *  F  Q  Y  Q  L  C  P  I  A  R  C  C  K  *  N  *  A  P  V  C  I  A  F  *  K  </first_frame>
            <second_frame>  F  L  I  L  M  I  A  K  S  I  A  K  L  N  I  E  R  K  G  R  K  C  *  Q  H  L  H  F  P  A  L  S  L  H  L  S  A  H  L  L  S  F  L  L  F  L  L  L  F  S  L  R  N  F  I  K  H  V  V  G  E  I  R  T  H  V  L  K  L  W  I  L  I  K  T  R :   *  *  Q  L  Q  L  G  C  S  V  L  L  L  E  L  E  F  Q  F  F  M  R  P  K  L  I  M  L :   Q  K  E  R  T  L  S  P  A  S  P  A  L  A  L  V  L  :  R  N  A  D  F  A  W  V  L  A  V  *  R  W  S  L  E  G  V  R  Q  K  S  L  G  A  S  I  V  T  V  L  V  V  *  L  A  Q  H  V  K  A  V  A  F  N  L  G  T  L  I  A   : G  N  S  R  T  M  I  R  Y  G  R  I  L  S  M  D  A  T  T  C  L  L  S  R  R  P  V  I  L  T  *  I  Y  *  H  K  I  V  *  N  S  F  M  F  I  P  S  L  C  L  S  Q  F  S  H  I  P  F  T  F  C  S  Y  M  *  S  L  T  S  *  A  I  H  D  F  N  T  S  F  V  Q  L  L  D  V  V  N  E  I  E  H  L  C  V  L  H  F  K  K </second_frame>
            <third_frame>   F  *  F  *  *  *  Q  N  P  *  L  N  *  T  L  K  E  K  G  G  N  V  N  S  T  F  T  F  P  L  *  V  S  I  Y  Q  L  T  S  *  A  S  Y  S  F  F  F  F  F  H  S  E  I  S  S  N  M  S  *  A  K  F  V  P  M  Y  *  S  C  G  S  *  S  K  H   : G  D  S  N  Y  S  W  G  A  Q  C  C  Y  W  S  W  N  S  S  F  L  *  D  P  N  *  *  C   : C  K  K  R  E  H  S  A  L  L  P  L  H  W  H  W  C  S :   E  M  Q  I  L  H  G  Y  W  Q  C  D  G  G  A  W  R  G  *  D  R  S  L  S  V  H  Q  L  *  R  C  W  W  F  D  L  H  N  M  S  R  Q  W  H  S  T  S  V  P  *  S  Q  :  G  I  Q  G  R  *  L  D  M  E  E  Y  S  A  W  M  P  Q  L  V  Y  C  L  E  D  L  S  F  *  P  E  Y  I  D  T  K  L  C  K  I  H  L  C  S  S  P  L  S  A  F  L  S  F  H  I  F  L  S  P  S  V  L  T  C  N  L  *  Q  V  E  Q  Y  M  I  S  I  P  A  L  S  N  C  *  M  L  *  M  K  L  S  T  C  V  Y  C  I  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="31" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145699" stop="145878"/>
                    <exon start="146005" stop="146088"/>
                    <exon start="146388" stop="146439"/>
                    <exon start="148035" stop="148191"/>
                    <exon start="148342" stop="148363"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKREEMLTAPSLSRFKSPFISSPLKLPTLSSSFFTQKFHQTCRRRNSYPCIKAVDLDQNTVIAITVGVLSVAIGVGIPVFYETQIDNAAKRENTQPCFPCTGTGAQKCRFCMGTGSVTVELGGGETEVSRCINCDGAGGLTCTTCQGSGIQPRYLDRREFKDDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="145663" e_stop="145878"/>
            <exon e_start="146005" e_stop="146088"/>
            <exon e_start="146388" e_stop="146439"/>
            <exon e_start="148035" e_stop="148149"/>
            <exon e_start="148397" e_stop="148588"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.991"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="145663" e_stop="145878" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="145879" i_stop="146004" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="146005" e_stop="146088" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.957">
            <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="146388" e_stop="146439" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.945">
            <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="148035" e_stop="148149" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="148150" i_stop="148396" i_length="247"/>
          </intron>
          <exon e_serial="5" e_score="0.964">
            <gDNA_exon_boundary e_start="148397" e_stop="148588" e_length="192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145663" stop="145878"/>
              <exon start="146005" stop="146083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145666" stop="145876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145671" stop="145878"/>
              <exon start="146005" stop="146088"/>
              <exon start="146388" stop="146439"/>
              <exon start="148035" stop="148149"/>
              <exon start="148397" stop="148588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145682" stop="145878"/>
              <exon start="146005" stop="146088"/>
              <exon start="146388" stop="146439"/>
              <exon start="148035" stop="148105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145682" stop="145878"/>
              <exon start="146005" stop="146088"/>
              <exon start="146388" stop="146439"/>
              <exon start="148035" stop="148088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="31" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG : GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT : GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC : AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAAC : TTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCT</gDNA_template>
            <first_frame> D  D  S  K  I  H  S  *  T  K  H  *  K  K  R  E  E  M  L  T  A  P  S  L  S  R  F  K  S  P  F  I  S  S  P  L  K  L  P  T  L  S  S  S  F  F  T  Q  K  F  H  Q  T  C  R  R  R  N  S  Y  P  C  I  K  A  V  D  L  D  Q  N  T  :  V  I  A  I  T  V  G  V  L  S  V  A  I  G  V  G  I  P  V  F  Y  E  T  Q  I  D  N  A  :  A  K  R  E  N  T  Q  P  C  F  P  C  T  G  T  G  A   : Q  K  C  R  F  C  M  G  T  G  S  V  T  V  E  L  G  G  G  E  T  E  V  S  R  C  I  N  C  D  G  A  G  G  L  T  C  T  T :   C  L  L  S  R  R  P  V  I  L  T  *  I  Y  *  H  K  I  V  *  N  S  F  M  F  I  P  S  L  C  L  S  Q  F  S  H  I  P  F  T  F  C  S  Y  M  *  S  L  T  S  *  A  I  H  D  F  N  T  S  F  V  Q  L   </first_frame>
            <second_frame>  M  I  A  K  S  I  A  K  L  N  I  E  R  K  G  R  K  C  *  Q  H  L  H  F  P  A  L  S  L  H  L  S  A  H  L  L  S  F  L  L  F  L  L  L  F  S  L  R  N  F  I  K  H  V  V  G  E  I  R  T  H  V  L  K  L  W  I  L  I  K  T  R :   *  *  Q  L  Q  L  G  C  S  V  L  L  L  E  L  E  F  Q  F  F  M  R  P  K  L  I  M  L :   Q  K  E  R  T  L  S  P  A  S  P  A  L  A  L  V  L  :  R  N  A  D  F  A  W  V  L  A  V  *  R  W  S  L  E  G  V  R  Q  K  S  L  G  A  S  I  V  T  V  L  V  V  *  L  A  Q   : L  V  Y  C  L  E  D  L  S  F  *  P  E  Y  I  D  T  K  L  C  K  I  H  L  C  S  S  P  L  S  A  F  L  S  F  H  I  F  L  S  P  S  V  L  T  C  N  L  *  Q  V  E  Q  Y  M  I  S  I  P  A  L  S  N  C  </second_frame>
            <third_frame>   *  *  Q  N  P  *  L  N  *  T  L  K  E  K  G  G  N  V  N  S  T  F  T  F  P  L  *  V  S  I  Y  Q  L  T  S  *  A  S  Y  S  F  F  F  F  F  H  S  E  I  S  S  N  M  S  *  A  K  F  V  P  M  Y  *  S  C  G  S  *  S  K  H   : G  D  S  N  Y  S  W  G  A  Q  C  C  Y  W  S  W  N  S  S  F  L  *  D  P  N  *  *  C   : C  K  K  R  E  H  S  A  L  L  P  L  H  W  H  W  C  S :   E  M  Q  I  L  H  G  Y  W  Q  C  D  G  G  A  W  R  G  *  D  R  S  L  S  V  H  Q  L  *  R  C  W  W  F  D  L  H  N  :  L  F  I  V  *  K  T  C  H  F  D  L  N  I  L  T  Q  N  C  V  K  F  I  Y  V  H  P  L  S  L  P  F  S  V  F  T  Y  S  F  H  L  L  F  L  H  V  I  F  N  K  L  S  N  T  *  F  Q  Y  Q  L  C  P  I  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="31" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145699" stop="145878"/>
                    <exon start="146005" stop="146088"/>
                    <exon start="146388" stop="146439"/>
                    <exon start="148035" stop="148149"/>
                    <exon start="148397" stop="148433"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKREEMLTAPSLSRFKSPFISSPLKLPTLSSSFFTQKFHQTCRRRNSYPCIKAVDLDQNTVIAITVGVLSVAIGVGIPVFYETQIDNAAKRENTQPCFPCTGTGAQKCRFCMGTGSVTVELGGGETEVSRCINCDGAGGLTCTTCLLSRRPVILT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="145666" e_stop="146088"/>
            <exon e_start="146388" e_stop="146557"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.957" e_score="0.920"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="145666" e_stop="146088" e_length="423"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.957">
            <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="146388" e_stop="146557" e_length="170"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145666" stop="145876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145751" stop="146088"/>
              <exon start="146388" stop="146557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145751" stop="146088"/>
              <exon start="146388" stop="146507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411329" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="31" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT : GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAA</gDNA_template>
            <first_frame> D  S  K  I  H  S  *  T  K  H  *  K  K  R  E  E  M  L  T  A  P  S  L  S  R  F  K  S  P  F  I  S  S  P  L  K  L  P  T  L  S  S  S  F  F  T  Q  K  F  H  Q  T  C  R  R  R  N  S  Y  P  C  I  K  A  V  D  L  D  Q  N  T  V  L  F  F  L  K  F  S  F  C  V  F  L  H  D  Y  C  L  I  S  V  D  L  I  W  V  F  F  I  F  F  L  F  L  G  K  L  *  C  T  W  Q  V  I  A  I  T  V  G  V  L  S  V  A  I  G  V  G  I  P  V  F  Y  E  T  Q  I  D  N  A  :  A  K  R  E  N  T  Q  P  C  F  P  C  T  G  T  G  A  R  K  Y  F  L  N  *  T  F  H  S  V  V  S  L  Y  V  R  S  D  K  Y  K  *  A  *  R  Y  I  V  M  S  T  S  V  L  K  I  H   </first_frame>
            <second_frame>  I  A  K  S  I  A  K  L  N  I  E  R  K  G  R  K  C  *  Q  H  L  H  F  P  A  L  S  L  H  L  S  A  H  L  L  S  F  L  L  F  L  L  L  F  S  L  R  N  F  I  K  H  V  V  G  E  I  R  T  H  V  L  K  L  W  I  L  I  K  T  R  F  F  S  F  S  S  S  L  F  V  F  F  S  M  I  I  V  *  F  Q  L  I  S  Y  G  F  F  L  F  F  F  Y  F  W  G  N  C  D  V  L  G  R  *  *  Q  L  Q  L  G  C  S  V  L  L  L  E  L  E  F  Q  F  F  M  R  P  K  L  I  M  L :   Q  K  E  R  T  L  S  P  A  S  P  A  L  A  L  V  L  V  S  I  S  *  T  R  L  S  I  L  L  F  L  Y  M  F  D  P  I  S  T  N  E  P  R  G  I  L  L  C  P  Q  V  Y  L  K  Y  I  </second_frame>
            <third_frame>   *  Q  N  P  *  L  N  *  T  L  K  E  K  G  G  N  V  N  S  T  F  T  F  P  L  *  V  S  I  Y  Q  L  T  S  *  A  S  Y  S  F  F  F  F  F  H  S  E  I  S  S  N  M  S  *  A  K  F  V  P  M  Y  *  S  C  G  S  *  S  K  H  G  S  F  L  S  Q  V  L  F  L  C  F  S  P  *  L  L  F  N  F  S  *  S  H  M  G  F  F  Y  F  F  F  I  F  G  E  I  V  M  Y  L  A  G  D  S  N  Y  S  W  G  A  Q  C  C  Y  W  S  W  N  S  S  F  L  *  D  P  N  *  *  C   : C  K  K  R  E  H  S  A  L  L  P  L  H  W  H  W  C  S  *  V  F  L  K  L  D  F  P  F  C  C  F  F  I  C  S  I  R  *  V  Q  M  S  L  E  V  Y  C  Y  V  H  K  C  T  *  N  T  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="31" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145699" stop="145992"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKREEMLTAPSLSRFKSPFISSPLKLPTLSSSFFTQKFHQTCRRRNSYPCIKAVDLDQNTVLFFLKFSFCVFLHDYCLISVDLIWVFFIFFLFLGKL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="31" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145721" stop="145933"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QHLHFPALSLHLSAHLLSFLLFLLLFSLRNFIKHVVGEIRTHVLKLWILIKTRFFSFSSSLFVFFSMIIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="145620" e_stop="146088"/>
            <exon e_start="146388" e_stop="146439"/>
            <exon e_start="148035" e_stop="148191"/>
            <exon e_start="148342" e_stop="148564"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.957" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.648" e_score="0.994"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="145620" e_stop="146088" e_length="469"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.957">
            <gDNA_intron_boundary i_start="146089" i_stop="146387" i_length="299"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="146388" e_stop="146439" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.945">
            <gDNA_intron_boundary i_start="146440" i_stop="148034" i_length="1595"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="148035" e_stop="148191" e_length="157"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.648">
            <gDNA_intron_boundary i_start="148192" i_stop="148341" i_length="150"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="148342" e_stop="148564" e_length="223"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145620" stop="146088"/>
              <exon start="146388" stop="146439"/>
              <exon start="148035" stop="148191"/>
              <exon start="148342" stop="148564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145666" stop="145876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146023" stop="146088"/>
              <exon start="146388" stop="146439"/>
              <exon start="148035" stop="148191"/>
              <exon start="148342" stop="148540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430692" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="31" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAGTTGGTGTCAGTTTCAGAATTTCTTGTTTTTCTGATTCTGATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT : GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC : AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG : GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTT</gDNA_template>
            <first_frame> N  S  W  C  Q  F  Q  N  F  L  F  F  *  F  *  *  *  Q  N  P  *  L  N  *  T  L  K  E  K  G  G  N  V  N  S  T  F  T  F  P  L  *  V  S  I  Y  Q  L  T  S  *  A  S  Y  S  F  F  F  F  F  H  S  E  I  S  S  N  M  S  *  A  K  F  V  P  M  Y  *  S  C  G  S  *  S  K  H  G  S  F  L  S  Q  V  L  F  L  C  F  S  P  *  L  L  F  N  F  S  *  S  H  M  G  F  F  Y  F  F  F  I  F  G  E  I  V  M  Y  L  A  G  D  S  N  Y  S  W  G  A  Q  C  C  Y  W  S  W  N  S  S  F  L  *  D  P  N  *  *  C   : C  K  K  R  E  H  S  A  L  L  P  L  H  W  H  W  C  S :   E  M  Q  I  L  H  G  Y  W  Q  C  D  G  G  A  W  R  G  *  D  R  S  L  S  V  H  Q  L  *  R  C  W  W  F  D  L  H  N  M  S  R  Q  W  H  S  T  S  V  P  *  S  Q  :  G  I  Q  G  R  *  L  D  M  E  E  Y  S  A  W  M  P  Q  L  V  Y  C  L  E  D  L  S  F  *  P  E  Y  I  D  T  K  L  C  K  I  H  L  C  S  S  P  L  S  A  F  L  S  F  H  I  F  L  S  P  S  V  L  T  C  N  L  *  Q  V  E  Q  Y  M  I  </first_frame>
            <second_frame>  T  V  G  V  S  F  R  I  S  C  F  S  D  S  D  D  S  K  I  H  S  *  T  K  H  *  K  K  R  E  E  M  L  T  A  P  S  L  S  R  F  K  S  P  F  I  S  S  P  L  K  L  P  T  L  S  S  S  F  F  T  Q  K  F  H  Q  T  C  R  R  R  N  S  Y  P  C  I  K  A  V  D  L  D  Q  N  T  V  L  F  F  L  K  F  S  F  C  V  F  L  H  D  Y  C  L  I  S  V  D  L  I  W  V  F  F  I  F  F  L  F  L  G  K  L  *  C  T  W  Q  V  I  A  I  T  V  G  V  L  S  V  A  I  G  V  G  I  P  V  F  Y  E  T  Q  I  D  N  A  :  A  K  R  E  N  T  Q  P  C  F  P  C  T  G  T  G  A   : Q  K  C  R  F  C  M  G  T  G  S  V  T  V  E  L  G  G  G  E  T  E  V  S  R  C  I  N  C  D  G  A  G  G  L  T  C  T  T  C  Q  G  S  G  I  Q  P  R  Y  L  D  R  R :   E  F  K  D  D  D  *  I  W  K  N  T  Q  H  G  C  H  N  L  F  I  V  *  K  T  C  H  F  D  L  N  I  L  T  Q  N  C  V  K  F  I  Y  V  H  P  L  S  L  P  F  S  V  F  T  Y  S  F  H  L  L  F  L  H  V  I  F  N  K  L  S  N  T  *  F </second_frame>
            <third_frame>   Q  L  V  S  V  S  E  F  L  V  F  L  I  L  M  I  A  K  S  I  A  K  L  N  I  E  R  K  G  R  K  C  *  Q  H  L  H  F  P  A  L  S  L  H  L  S  A  H  L  L  S  F  L  L  F  L  L  L  F  S  L  R  N  F  I  K  H  V  V  G  E  I  R  T  H  V  L  K  L  W  I  L  I  K  T  R  F  F  S  F  S  S  S  L  F  V  F  F  S  M  I  I  V  *  F  Q  L  I  S  Y  G  F  F  L  F  F  F  Y  F  W  G  N  C  D  V  L  G  R  *  *  Q  L  Q  L  G  C  S  V  L  L  L  E  L  E  F  Q  F  F  M  R  P  K  L  I  M  L :   Q  K  E  R  T  L  S  P  A  S  P  A  L  A  L  V  L  :  R  N  A  D  F  A  W  V  L  A  V  *  R  W  S  L  E  G  V  R  Q  K  S  L  G  A  S  I  V  T  V  L  V  V  *  L  A  Q  H  V  K  A  V  A  F  N  L  G  T  L  I  A   : G  N  S  R  T  M  I  R  Y  G  R  I  L  S  M  D  A  T  T  C  L  L  S  R  R  P  V  I  L  T  *  I  Y  *  H  K  I  V  *  N  S  F  M  F  I  P  S  L  C  L  S  Q  F  S  H  I  P  F  T  F  C  S  Y  M  *  S  L  T  S  *  A  I  H  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="31" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145993" stop="146088"/>
                    <exon start="146388" stop="146439"/>
                    <exon start="148035" stop="148191"/>
                    <exon start="148342" stop="148363"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTWQVIAITVGVLSVAIGVGIPVFYETQIDNAAKRENTQPCFPCTGTGAQKCRFCMGTGSVTVELGGGETEVSRCINCDGAGGLTCTTCQGSGIQPRYLDRREFKDDD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="31" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145699" stop="145992"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKREEMLTAPSLSRFKSPFISSPLKLPTLSSSFFTQKFHQTCRRRNSYPCIKAVDLDQNTVLFFLKFSFCVFLHDYCLISVDLIWVFFIFFLFLGKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="32" PGL_strand="-" PGL_start="148613" PGL_stop="148325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="148613" e_stop="148325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="148613" e_stop="148325" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="148613" stop="148325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280591" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="32" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGCTCAATTTCATTTACAACATCTAGCAATTGGACAAAGCTGGTATTGAAATCATGTATTGCTCAACTTGTTAAAGATTACATGTAAGAACAGAAGGTGAAAGGAATATGTGAAAACTGAGAAAGGCAGAGAGAGGGGATGAACATAAATGAATTTTACACAATTTTGTGTCAATATATTCAGGTCAAAATGACAGGTCTTCTAGACAATAAACAAGTTGTGGCATCCATGCTGAGTATTCTTCCATATCTAATCATCGTCCTTGAATTCCCTGTCGAGAAGAAGATG</gDNA_template>
            <first_frame> V  L  N  F  I  Y  N  I  *  Q  L  D  K  A  G  I  E  I  M  Y  C  S  T  C  *  R  L  H  V  R  T  E  G  E  R  N  M  *  K  L  R  K  A  E  R  G  D  E  H  K  *  I  L  H  N  F  V  S  I  Y  S  G  Q  N  D  R  S  S  R  Q  *  T  S  C  G  I  H  A  E  Y  S  S  I  S  N  H  R  P  *  I  P  C  R  E  E  D  </first_frame>
            <second_frame>  C  S  I  S  F  T  T  S  S  N  W  T  K  L  V  L  K  S  C  I  A  Q  L  V  K  D  Y  M  *  E  Q  K  V  K  G  I  C  E  N  *  E  R  Q  R  E  G  M  N  I  N  E  F  Y  T  I  L  C  Q  Y  I  Q  V  K  M  T  G  L  L  D  N  K  Q  V  V  A  S  M  L  S  I  L  P  Y  L  I  I  V  L  E  F  P  V  E  K  K  M </second_frame>
            <third_frame>   A  Q  F  H  L  Q  H  L  A  I  G  Q  S  W  Y  *  N  H  V  L  L  N  L  L  K  I  T  C  K  N  R  R  *  K  E  Y  V  K  T  E  K  G  R  E  R  G  *  T  *  M  N  F  T  Q  F  C  V  N  I  F  R  S  K  *  Q  V  F  *  T  I  N  K  L  W  H  P  C  *  V  F  F  H  I  *  S  S  S  L  N  S  L  S  R  R  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0101P06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="33" PGL_strand="+" PGL_start="149084" PGL_stop="152890"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="149084" e_stop="149389"/>
            <exon e_start="149486" e_stop="149610"/>
            <exon e_start="150680" e_stop="150909"/>
            <exon e_start="151582" e_stop="151621"/>
            <exon e_start="151699" e_stop="151790"/>
            <exon e_start="152471" e_stop="152890"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.956" e_score="0.997"/>
          <exon-intron don_prob="0.986" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.485" acc_prob="0.864" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="149084" e_stop="149389" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.956">
            <gDNA_intron_boundary i_start="149390" i_stop="149485" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="149486" e_stop="149610" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.957">
            <gDNA_intron_boundary i_start="149611" i_stop="150679" i_length="1069"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="150680" e_stop="150909" e_length="230"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="150910" i_stop="151581" i_length="672"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="151582" e_stop="151621" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.922">
            <gDNA_intron_boundary i_start="151622" i_stop="151698" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="151699" e_stop="151790" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.485" acc_prob="0.864">
            <gDNA_intron_boundary i_start="151791" i_stop="152470" i_length="680"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="152471" e_stop="152890" e_length="420"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149084" stop="149389"/>
              <exon start="149486" stop="149610"/>
              <exon start="150680" stop="150909"/>
              <exon start="151582" stop="151621"/>
              <exon start="151699" stop="151753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149346" stop="149389"/>
              <exon start="149486" stop="149610"/>
              <exon start="150680" stop="150909"/>
              <exon start="151582" stop="151621"/>
              <exon start="151699" stop="151790"/>
              <exon start="152471" stop="152576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150690" stop="150909"/>
              <exon start="151582" stop="151621"/>
              <exon start="151699" stop="151790"/>
              <exon start="152471" stop="152760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151744" stop="151790"/>
              <exon start="152471" stop="152890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325422" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="33" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACAAGTTTTCACTAGGGTTTAAATTCATCGTCTCCCTCGTTCCAACTGGAAAAAAGAACTGTTTCCTCTGTATCTCGTACTGGAACTTGTAAATTTGCATCACTAATTAGAAGTATATTTTGGATTAGAAGTGAAGTGAAGTGAAGGGAGAATCATGCTGTATATAATAGGTCTTGGATTGGGTGATGATAAAGATATAACTTTGAAAGGTCTTGAAGCAGTAAAAAAATGCAGCAAAGTATACATGGAAGCTTACACTTCACTTCTCTCTTTTGGGCTTTCTCCAAATGGTCTTTCCAATCTG : GAAAATCTTTATGGAAGATCAATAACACTTGCAGATAGGGAAATGGTAGAGGAGAAAGCTGATGAGATCCTTAATGAAGCTAAAGCTTCTGACGTGGCTTTTCTAGTTGTTGGTGATCCTTTTGG : AGCCACAACCCACACTGATATTGTCGTCCGTGCGAAGAAGTTGGGTGTGGATGTTAAGGTGATACACAATGCATCTGTGATGAATGCTGTTGGAGTGTGTGGCTTACAGCTCTACCATTATGGAGAGACAGTGTCCATACCGTTCTTCACTGAGACCTGGAGGCCGGATAGTTTCTATGAGAAGATTAGAGAAAACCGAAAGCTTGGACTACACACACTCTGCTTGTTAG : ATATACGAGTGAAAGAACCAACCATCGAGTCTCTTTGCAG : AGGAAAGAAGCAGTATGAACCTCCCAGATTTATGACAGTTAACACAGCAATTGAGCAGCTCTTAGAGGTTGAAGAAGCCCGTGGAGAATTTG : TATACGGTGAAAATACAATCTGTGTTGGTTTTGCACGGCTGGGGAGTGAAGACCAAAAGGTGGTTGCTGGTTCAATGAAGCAACTTCTAACAGTCGACTTTGGGGCGCCATTGCATTGCTTAGTCATAGTTGGCAAAACACACCCTGTTGAAGAAGAAATGCTGGAATTTTATGGGCTTTAGAAAACGTATCACAGGATTGCAATAGCAAATACTGTATTCATGTGTTGCCTTTTGTACCATTCCATTCTTTTTGGTGACTATTTATTTAGGCATTAAGATGACTATGATGTATTTTTTGCTTTGTAAACTCTTCCCATCTTCAAGTGATTTTGACATATTTTCAAGAATTCTTAAATTTAAGATATTGTTGGTTATTTTTGTAATCTTTCACTAGTATTCTCAATACATTATATCAAAT</gDNA_template>
            <first_frame> L  Q  V  F  T  R  V  *  I  H  R  L  P  R  S  N  W  K  K  E  L  F  P  L  Y  L  V  L  E  L  V  N  L  H  H  *  L  E  V  Y  F  G  L  E  V  K  *  S  E  G  R  I  M  L  Y  I  I  G  L  G  L  G  D  D  K  D  I  T  L  K  G  L  E  A  V  K  K  C  S  K  V  Y  M  E  A  Y  T  S  L  L  S  F  G  L  S  P  N  G  L  S  N  L  :  E  N  L  Y  G  R  S  I  T  L  A  D  R  E  M  V  E  E  K  A  D  E  I  L  N  E  A  K  A  S  D  V  A  F  L  V  V  G  D  P  F  G :   A  T  T  H  T  D  I  V  V  R  A  K  K  L  G  V  D  V  K  V  I  H  N  A  S  V  M  N  A  V  G  V  C  G  L  Q  L  Y  H  Y  G  E  T  V  S  I  P  F  F  T  E  T  W  R  P  D  S  F  Y  E  K  I  R  E  N  R  K  L  G  L  H  T  L  C  L  L   : D  I  R  V  K  E  P  T  I  E  S  L  C  R :   G  K  K  Q  Y  E  P  P  R  F  M  T  V  N  T  A  I  E  Q  L  L  E  V  E  E  A  R  G  E  F   : V  Y  G  E  N  T  I  C  V  G  F  A  R  L  G  S  E  D  Q  K  V  V  A  G  S  M  K  Q  L  L  T  V  D  F  G  A  P  L  H  C  L  V  I  V  G  K  T  H  P  V  E  E  E  M  L  E  F  Y  G  L  *  K  T  Y  H  R  I  A  I  A  N  T  V  F  M  C  C  L  L  Y  H  S  I  L  F  G  D  Y  L  F  R  H  *  D  D  Y  D  V  F  F  A  L  *  T  L  P  I  F  K  *  F  *  H  I  F  K  N  S  *  I  *  D  I  V  G  Y  F  C  N  L  S  L  V  F  S  I  H  Y  I  K  </first_frame>
            <second_frame>  Y  K  F  S  L  G  F  K  F  I  V  S  L  V  P  T  G  K  K  N  C  F  L  C  I  S  Y  W  N  L  *  I  C  I  T  N  *  K  Y  I  L  D  *  K  *  S  E  V  K  G  E  S  C  C  I  *  *  V  L  D  W  V  M  I  K  I  *  L  *  K  V  L  K  Q  *  K  N  A  A  K  Y  T  W  K  L  T  L  H  F  S  L  L  G  F  L  Q  M  V  F  P  I  W :   K  I  F  M  E  D  Q  *  H  L  Q  I  G  K  W  *  R  R  K  L  M  R  S  L  M  K  L  K  L  L  T  W  L  F  *  L  L  V  I  L  L   : E  P  Q  P  T  L  I  L  S  S  V  R  R  S  W  V  W  M  L  R  *  Y  T  M  H  L  *  *  M  L  L  E  C  V  A  Y  S  S  T  I  M  E  R  Q  C  P  Y  R  S  S  L  R  P  G  G  R  I  V  S  M  R  R  L  E  K  T  E  S  L  D  Y  T  H  S  A  C  *  :  I  Y  E  *  K  N  Q  P  S  S  L  F  A   : E  E  R  S  S  M  N  L  P  D  L  *  Q  L  T  Q  Q  L  S  S  S  *  R  L  K  K  P  V  E  N  L  :  Y  T  V  K  I  Q  S  V  L  V  L  H  G  W  G  V  K  T  K  R  W  L  L  V  Q  *  S  N  F  *  Q  S  T  L  G  R  H  C  I  A  *  S  *  L  A  K  H  T  L  L  K  K  K  C  W  N  F  M  G  F  R  K  R  I  T  G  L  Q  *  Q  I  L  Y  S  C  V  A  F  C  T  I  P  F  F  L  V  T  I  Y  L  G  I  K  M  T  M  M  Y  F  L  L  C  K  L  F  P  S  S  S  D  F  D  I  F  S  R  I  L  K  F  K  I  L  L  V  I  F  V  I  F  H  *  Y  S  Q  Y  I  I  S  N </second_frame>
            <third_frame>   T  S  F  H  *  G  L  N  S  S  S  P  S  F  Q  L  E  K  R  T  V  S  S  V  S  R  T  G  T  C  K  F  A  S  L  I  R  S  I  F  W  I  R  S  E  V  K  *  R  E  N  H  A  V  Y  N  R  S  W  I  G  *  *  *  R  Y  N  F  E  R  S  *  S  S  K  K  M  Q  Q  S  I  H  G  S  L  H  F  T  S  L  F  W  A  F  S  K  W  S  F  Q  S   : G  K  S  L  W  K  I  N  N  T  C  R  *  G  N  G  R  G  E  S  *  *  D  P  *  *  S  *  S  F  *  R  G  F  S  S  C  W  *  S  F  W  :  S  H  N  P  H  *  Y  C  R  P  C  E  E  V  G  C  G  C  *  G  D  T  Q  C  I  C  D  E  C  C  W  S  V  W  L  T  A  L  P  L  W  R  D  S  V  H  T  V  L  H  *  D  L  E  A  G  *  F  L  *  E  D  *  R  K  P  K  A  W  T  T  H  T  L  L  V  R :   Y  T  S  E  R  T  N  H  R  V  S  L  Q  :  R  K  E  A  V  *  T  S  Q  I  Y  D  S  *  H  S  N  *  A  A  L  R  G  *  R  S  P  W  R  I  C :   I  R  *  K  Y  N  L  C  W  F  C  T  A  G  E  *  R  P  K  G  G  C  W  F  N  E  A  T  S  N  S  R  L  W  G  A  I  A  L  L  S  H  S  W  Q  N  T  P  C  *  R  R  N  A  G  I  L  W  A  L  E  N  V  S  Q  D  C  N  S  K  Y  C  I  H  V  L  P  F  V  P  F  H  S  F  W  *  L  F  I  *  A  L  R  *  L  *  C  I  F  C  F  V  N  S  S  H  L  Q  V  I  L  T  Y  F  Q  E  F  L  N  L  R  Y  C  W  L  F  L  *  S  F  T  S  I  L  N  T  L  Y  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="33" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="149225" stop="149389"/>
                    <exon start="149486" stop="149610"/>
                    <exon start="150680" stop="150909"/>
                    <exon start="151582" stop="151621"/>
                    <exon start="151699" stop="151790"/>
                    <exon start="152471" stop="152652"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEGRIMLYIIGLGLGDDKDITLKGLEAVKKCSKVYMEAYTSLLSFGLSPNGLSNLENLYGRSITLADREMVEEKADEILNEAKASDVAFLVVGDPFGATTHTDIVVRAKKLGVDVKVIHNASVMNAVGVCGLQLYHYGETVSIPFFTETWRPDSFYEKIRENRKLGLHTLCLLDIRVKEPTIESLCRGKKQYEPPRFMTVNTAIEQLLEVEEARGEFVYGENTICVGFARLGSEDQKVVAGSMKQLLTVDFGAPLHCLVIVGKTHPVEEEMLEFYGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="34" PGL_strand="+" PGL_start="154884" PGL_stop="156945"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="154884" e_stop="155091"/>
            <exon e_start="155218" e_stop="155440"/>
            <exon e_start="156662" e_stop="156945"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="0.793"/>
          <exon-intron don_prob="0.000" acc_prob="0.895" e_score="0.964"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.793">
            <gDNA_exon_boundary e_start="154884" e_stop="155091" e_length="208"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="155092" i_stop="155217" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="155218" e_stop="155440" e_length="223"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.895">
            <gDNA_intron_boundary i_start="155441" i_stop="156661" i_length="1221"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="156662" e_stop="156945" e_length="284"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="154884" stop="155091"/>
              <exon start="155218" stop="155440"/>
              <exon start="156662" stop="156945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155006" stop="155091"/>
              <exon start="155218" stop="155440"/>
              <exon start="156662" stop="156833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474730" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="34" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTCAACTACCTCAAATCTCTCTTCTTTTAATTTAACCATTTTCATTTTCCACCCTAAATTTTCTCCATTATTTTCTTCATTCTCTCCAATCTTTTTCTTCTTTTGTGTTCTTGTTTATATTATTATTTTCACCTGCATTGCATATTAAAAGAACAAGTTTTTCAGCCATATAATCCCGCATTGTGTGTGCGGGATCATTAAATCAG : GTAAATTTGTTGAGGTGAATAAGGATGGGAGAGAAATCAAAAAAAGGGGGTTGGTGTGGATGGATTATAGCTTTGGTAGTGGTTGCTGCGGCTGCTGGAGCCATTGTGGTACTTTTTATGAAGAAGCATAATGGTTCTGGCTCAGATGCTGCTTCTGGTGCTTCTGAAAAGAAATATGGAGATGCTTTGAAAATTGCAATGCAGTTCTTTGATGTCCAAAAAT : CTGGGAAATTGGTAAATAATAAGATATCATGGAGAGGCGATTCAGCCGTCAAAGATGGAAGTCAAGAAAAGTTAGACCTCAGTCAAGGAATGTATGATGCTGGCGACCACATGAAATTTAATTTCCCAATGGCTTACACTGCCACTGTGTTGTCATGGGCCATCCTTGAGTATGGTAATCAGATGAAGGGTGTGGGCCAGTTGGAACCTGCTGAAGACTCACTCAAATGGATTACGGACTATCTTATCAATTGTCATCCAAAAGATGATGTTCTTTATATTCAG</gDNA_template>
            <first_frame> P  S  T  T  S  N  L  S  S  F  N  L  T  I  F  I  F  H  P  K  F  S  P  L  F  S  S  F  S  P  I  F  F  F  F  C  V  L  V  Y  I  I  I  F  T  C  I  A  Y  *  K  N  K  F  F  S  H  I  I  P  H  C  V  C  G  I  I  K  S   : G  K  F  V  E  V  N  K  D  G  R  E  I  K  K  R  G  L  V  W  M  D  Y  S  F  G  S  G  C  C  G  C  W  S  H  C  G  T  F  Y  E  E  A  *  W  F  W  L  R  C  C  F  W  C  F  *  K  E  I  W  R  C  F  E  N  C  N  A  V  L  *  C  P  K  I :   W  E  I  G  K  *  *  D  I  M  E  R  R  F  S  R  Q  R  W  K  S  R  K  V  R  P  Q  S  R  N  V  *  C  W  R  P  H  E  I  *  F  P  N  G  L  H  C  H  C  V  V  M  G  H  P  *  V  W  *  S  D  E  G  C  G  P  V  G  T  C  *  R  L  T  Q  M  D  Y  G  L  S  Y  Q  L  S  S  K  R  *  C  S  L  Y  S  </first_frame>
            <second_frame>  P  Q  L  P  Q  I  S  L  L  L  I  *  P  F  S  F  S  T  L  N  F  L  H  Y  F  L  H  S  L  Q  S  F  S  S  F  V  F  L  F  I  L  L  F  S  P  A  L  H  I  K  R  T  S  F  S  A  I  *  S  R  I  V  C  A  G  S  L  N  Q  :  V  N  L  L  R  *  I  R  M  G  E  K  S  K  K  G  G  W  C  G  W  I  I  A  L  V  V  V  A  A  A  A  G  A  I  V  V  L  F  M  K  K  H  N  G  S  G  S  D  A  A  S  G  A  S  E  K  K  Y  G  D  A  L  K  I  A  M  Q  F  F  D  V  Q  K   : S  G  K  L  V  N  N  K  I  S  W  R  G  D  S  A  V  K  D  G  S  Q  E  K  L  D  L  S  Q  G  M  Y  D  A  G  D  H  M  K  F  N  F  P  M  A  Y  T  A  T  V  L  S  W  A  I  L  E  Y  G  N  Q  M  K  G  V  G  Q  L  E  P  A  E  D  S  L  K  W  I  T  D  Y  L  I  N  C  H  P  K  D  D  V  L  Y  I  Q </second_frame>
            <third_frame>   L  N  Y  L  K  S  L  F  F  *  F  N  H  F  H  F  P  P  *  I  F  S  I  I  F  F  I  L  S  N  L  F  L  L  L  C  S  C  L  Y  Y  Y  F  H  L  H  C  I  L  K  E  Q  V  F  Q  P  Y  N  P  A  L  C  V  R  D  H  *  I  R :   *  I  C  *  G  E  *  G  W  E  R  N  Q  K  K  G  V  G  V  D  G  L  *  L  W  *  W  L  L  R  L  L  E  P  L  W  Y  F  L  *  R  S  I  M  V  L  A  Q  M  L  L  L  V  L  L  K  R  N  M  E  M  L  *  K  L  Q  C  S  S  L  M  S  K  N  :  L  G  N  W  *  I  I  R  Y  H  G  E  A  I  Q  P  S  K  M  E  V  K  K  S  *  T  S  V  K  E  C  M  M  L  A  T  T  *  N  L  I  S  Q  W  L  T  L  P  L  C  C  H  G  P  S  L  S  M  V  I  R  *  R  V  W  A  S  W  N  L  L  K  T  H  S  N  G  L  R  T  I  L  S  I  V  I  Q  K  M  M  F  F  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="34" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="155236" stop="155440"/>
                    <exon start="156662" stop="156945"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRMGEKSKKGGWCGWIIALVVVAAAAGAIVVLFMKKHNGSGSDAASGASEKKYGDALKIAMQFFDVQKSGKLVNNKISWRGDSAVKDGSQEKLDLSQGMYDAGDHMKFNFPMAYTATVLSWAILEYGNQMKGVGQLEPAEDSLKWITDYLINCHPKDDVLYIQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="154965" e_stop="155091"/>
            <exon e_start="155213" e_stop="155440"/>
            <exon e_start="156662" e_stop="156945"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.895" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="154965" e_stop="155091" e_length="127"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.951">
            <gDNA_intron_boundary i_start="155092" i_stop="155212" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="155213" e_stop="155440" e_length="228"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.895">
            <gDNA_intron_boundary i_start="155441" i_stop="156661" i_length="1221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="156662" e_stop="156945" e_length="284"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="154965" stop="155091"/>
              <exon start="155213" stop="155440"/>
              <exon start="156662" stop="156945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344529" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="34" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTCTCCAATCTTTTTCTTCTTTTGTGTTCTTGTTTATATTATTATTTTCACCTGCATTGCATATTAAAAGAACAAGTTTTTCAGCCATATAATCCCGCATTGTGTGTGCGGGATCATTAAATCAG : TGCAGGTAAATTTGTTGAGGTGAATAAGGATGGGAGAGAAATCAAAAAAAGGGGGTTGGTGTGGATGGATTATAGCTTTGGTAGTGGTTGCTGCGGCTGCTGGAGCCATTGTGGTACTTTTTATGAAGAAGCATAATGGTTCTGGCTCAGATGCTGCTTCTGGTGCTTCTGAAAAGAAATATGGAGATGCTTTGAAAATTGCAATGCAGTTCTTTGATGTCCAAAAAT : CTGGGAAATTGGTAAATAATAAGATATCATGGAGAGGCGATTCAGCCGTCAAAGATGGAAGTCAAGAAAAGTTAGACCTCAGTCAAGGAATGTATGATGCTGGCGACCACATGAAATTTAATTTCCCAATGGCTTACACTGCCACTGTGTTGTCATGGGCCATCCTTGAGTATGGTAATCAGATGAAGGGTGTGGGCCAGTTGGAACCTGCTGAAGACTCACTCAAATGGATTACGGACTATCTTATCAATTGTCATCCAAAAGATGATGTTCTTTATATTCAG</gDNA_template>
            <first_frame> F  S  P  I  F  F  F  F  C  V  L  V  Y  I  I  I  F  T  C  I  A  Y  *  K  N  K  F  F  S  H  I  I  P  H  C  V  C  G  I  I  K  S   : V  Q  V  N  L  L  R  *  I  R  M  G  E  K  S  K  K  G  G  W  C  G  W  I  I  A  L  V  V  V  A  A  A  A  G  A  I  V  V  L  F  M  K  K  H  N  G  S  G  S  D  A  A  S  G  A  S  E  K  K  Y  G  D  A  L  K  I  A  M  Q  F  F  D  V  Q  K   : S  G  K  L  V  N  N  K  I  S  W  R  G  D  S  A  V  K  D  G  S  Q  E  K  L  D  L  S  Q  G  M  Y  D  A  G  D  H  M  K  F  N  F  P  M  A  Y  T  A  T  V  L  S  W  A  I  L  E  Y  G  N  Q  M  K  G  V  G  Q  L  E  P  A  E  D  S  L  K  W  I  T  D  Y  L  I  N  C  H  P  K  D  D  V  L  Y  I  Q </first_frame>
            <second_frame>  S  L  Q  S  F  S  S  F  V  F  L  F  I  L  L  F  S  P  A  L  H  I  K  R  T  S  F  S  A  I  *  S  R  I  V  C  A  G  S  L  N  Q  :  C  R  *  I  C  *  G  E  *  G  W  E  R  N  Q  K  K  G  V  G  V  D  G  L  *  L  W  *  W  L  L  R  L  L  E  P  L  W  Y  F  L  *  R  S  I  M  V  L  A  Q  M  L  L  L  V  L  L  K  R  N  M  E  M  L  *  K  L  Q  C  S  S  L  M  S  K  N  :  L  G  N  W  *  I  I  R  Y  H  G  E  A  I  Q  P  S  K  M  E  V  K  K  S  *  T  S  V  K  E  C  M  M  L  A  T  T  *  N  L  I  S  Q  W  L  T  L  P  L  C  C  H  G  P  S  L  S  M  V  I  R  *  R  V  W  A  S  W  N  L  L  K  T  H  S  N  G  L  R  T  I  L  S  I  V  I  Q  K  M  M  F  F  I  F   </second_frame>
            <third_frame>   L  S  N  L  F  L  L  L  C  S  C  L  Y  Y  Y  F  H  L  H  C  I  L  K  E  Q  V  F  Q  P  Y  N  P  A  L  C  V  R  D  H  *  I  S :   A  G  K  F  V  E  V  N  K  D  G  R  E  I  K  K  R  G  L  V  W  M  D  Y  S  F  G  S  G  C  C  G  C  W  S  H  C  G  T  F  Y  E  E  A  *  W  F  W  L  R  C  C  F  W  C  F  *  K  E  I  W  R  C  F  E  N  C  N  A  V  L  *  C  P  K  I :   W  E  I  G  K  *  *  D  I  M  E  R  R  F  S  R  Q  R  W  K  S  R  K  V  R  P  Q  S  R  N  V  *  C  W  R  P  H  E  I  *  F  P  N  G  L  H  C  H  C  V  V  M  G  H  P  *  V  W  *  S  D  E  G  C  G  P  V  G  T  C  *  R  L  T  Q  M  D  Y  G  L  S  Y  Q  L  S  S  K  R  *  C  S  L  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0101P06.1" strand="+"/>
                <serials PGL_serial="34" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="155236" stop="155440"/>
                    <exon start="156662" stop="156945"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRMGEKSKKGGWCGWIIALVVVAAAAGAIVVLFMKKHNGSGSDAASGASEKKYGDALKIAMQFFDVQKSGKLVNNKISWRGDSAVKDGSQEKLDLSQGMYDAGDHMKFNFPMAYTATVLSWAILEYGNQMKGVGQLEPAEDSLKWITDYLINCHPKDDVLYIQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 615 chains have been computed
$ 
$ memory statistics:
$ 1038336 bytes spliced alignments in total
$ 384 spliced alignments have been stored
$ 2704 bytes was the average size of a spliced alignment
$ 61480 bytes predicted gene locations in total
$ 34 predicted gene locations have been stored
$ 1808 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 711 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:41:55
-->
