<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:22:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0096I08-RwzkG/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0096I08-RwzkG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0096I08-RwzkG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M359-R" ref_strand="+" ref_description="SGN-M359-R TG37-R [rflp_markers_reverse]">
      <seq>aacttacattccatccaaccatggaggaagcctgaaatcatcaattgagaagacagccttcaattcaggagaagataccaatttcaaacgtggggcagaaggagcactggagtatttcctgccaactggatatataacctgtcacattagtaaagttaatcaaaagagaaccgagaaaggaagaaaaaatgacaagccaaaagatgattagacaaacaaattactcatttagtctcaatgataaatacaagctgaagaaacaattaaaccaacaaatgaactatttaacctccacaaaaagtttcagttttaacacttaaatgatgcagctttaggaatgatatgaaagcaagtaaatgacaaaaaaaatgtattgcattcattcatccaaattttccccagaagatatgcaaaaataatgcttcaaatgatcctcaaatgatgccatgcttaaatctccttcaatagtaaatgacaaaaaagatgtattgcattcattcatcctaattttcccccagagttacgcaaaaataatgcctcaaatgatgcgatgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0096I08-RwzkG/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0096I08.1" temp_strand="+" temp_description="C04HBa0096I08.1  CU469513.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0096I08 sequenced_by:sanger upload_account_name:uk">
        <position start="2543" stop="3699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2843" g_stop="3399" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0096I08.1" gen_strand="+" ref_id="SGN-M359-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0096I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M359-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2843" e_stop="3399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTACATTCCATCCAACCATGGAGGAAGCCTGAAATCATCAATTGAGAAGACAGCCTTCAATTCAGGAGAAGATACCAATTTCAAACGTGGGGCAGAAGGAGCACTGGAGTATTTCCTGCCAACTGGATATATAACCTGTCACATTAGTAAAGTTAATCAAAAGAGAACCGAGAAAGGAAGAAAAAATGACAAGCCAAAAGATGATTAGACAAACAAATTACTCATTTAGTCTCAATGATAAATACAAGCTGAAGAAACAATTAAACCAACAAATGAACTATTTAACCTCCACAAAAAGTTTCAGTTTTAACACTTAAATGATGCAGCTTTAGGAATGATATGAAAGCAAGTAAATGACAAAAAAAATGTATTGCATTCATTCATCCAAATTTTCCCCAGAAGATATGCAAAAATAATGCTTCAAATGATCCTCAAATGATGCCATGCTTAAATCTCCTTCAATAGTAAATGACAAAAAAGATGTATTGCATTCATTCATCCTAATTTTCCCCCAGAGTTACGCAAAAATAATGCCTCAAATGATGCGATGCTTA</genome_strand>
        <mrna_strand>AACTTACATTCCATCCAACCATGGAGGAAGCCTGAAATCATCAATTGAGAAGACAGCCTTCAATTCAGGAGAAGATACCAATTTCAAACGTGGGGCAGAAGGAGCACTGGAGTATTTCCTGCCAACTGGATATATAACCTGTCACATTAGTAAAGTTAATCAAAAGAGAACCGAGAAAGGAAGAAAAAATGACAAGCCAAAAGATGATTAGACAAACAAATTACTCATTTAGTCTCAATGATAAATACAAGCTGAAGAAACAATTAAACCAACAAATGAACTATTTAACCTCCACAAAAAGTTTCAGTTTTAACACTTAAATGATGCAGCTTTAGGAATGATATGAAAGCAAGTAAATGACAAAAAAAATGTATTGCATTCATTCATCCAAATTTTCCCCAGAAGATATGCAAAAATAATGCTTCAAATGATCCTCAAATGATGCCATGCTTAAATCTCCTTCAATAGTAAATGACAAAAAAGATGTATTGCATTCATTCATCCTAATTTTCCCCCAGAGTTACGCAAAAATAATGCCTCAAATGATGCGATGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0096I08-RwzkG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M359-F" ref_strand="+" ref_description="SGN-M359-F TG37-F [rflp_markers_forward]">
      <seq>tccatccgccatggaggaagcctgaaatcatcaattgagaagacagccttcgattctggagaagataccaattatcaacgaggggcagaaggagcactggaggatttcctgccaactggatatataacctgtcacattactaaagttaatcgaaagagaaccgagaaaggaagaaaaaatgacaagccaaaagatgattagacaaacaaattactcatttagtctcaatgataaatacaagctgaagaaacaattaaaccaacaaatgaactatttaacctccacaaaaagtttcagttttaacacttaaatgatgcagctttacgaatgatatgaaagcaagtaaatgacaaaaaaaatgtattgcattcatgtcatccaaattttccccagaagatatgcaaaaataatgcttcagatgatcctcaaatgatgccatgcttaaatctccttcaatagtaaatgacaaaaaagatgtattgcattcattcatcctaattttcccccagagttacgcaaaaataatgcctcaaatgatgcgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0096I08-RwzkG/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0096I08.1" temp_strand="+" temp_description="C04HBa0096I08.1  CU469513.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0096I08 sequenced_by:sanger upload_account_name:uk">
        <position start="2552" stop="3696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2852" g_stop="3396" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0096I08.1" gen_strand="+" ref_id="SGN-M359-F" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0096I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M359-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2852" e_stop="3396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATCCAACCATGGAGGAAGCCTGAAATCATCAATTGAGAAGACAGCCTTCAATTCAGGAGAAGATACCAATTTCAAACGTGGGGCAGAAGGAGCACTGGAGTATTTCCTGCCAACTGGATATATAACCTGTCACATTAGTAAAGTTAATCAAAAGAGAACCGAGAAAGGAAGAAAAAATGACAAGCCAAAAGATGATTAGACAAACAAATTACTCATTTAGTCTCAATGATAAATACAAGCTGAAGAAACAATTAAACCAACAAATGAACTATTTAACCTCCACAAAAAGTTTCAGTTTTAACACTTAAATGATGCAGCTTTAGGAATGATATGAAAGCAAGTAAATGACAAAAAAAATGTATTGCATTCAT-TCATCCAAATTTTCCCCAGAAGATATGCAAAAATAATGCTTCAAATGATCCTCAAATGATGCCATGCTTAAATCTCCTTCAATAGTAAATGACAAAAAAGATGTATTGCATTCATTCATCCTAATTTTCCCCCAGAGTTACGCAAAAATAATGCCTCAAATGATGCGATGC</genome_strand>
        <mrna_strand>TCCATCC-GCCATGGAGGAAGCCTGAAATCATCAATTGAGAAGACAGCCTTCGATTCTGGAGAAGATACCAATTATCAACGAGGGGCAGAAGGAGCACTGGAGGATTTCCTGCCAACTGGATATATAACCTGTCACATTACTAAAGTTAATCGAAAGAGAACCGAGAAAGGAAGAAAAAATGACAAGCCAAAAGATGATTAGACAAACAAATTACTCATTTAGTCTCAATGATAAATACAAGCTGAAGAAACAATTAAACCAACAAATGAACTATTTAACCTCCACAAAAAGTTTCAGTTTTAACACTTAAATGATGCAGCTTTACGAATGATATGAAAGCAAGTAAATGACAAAAAAAATGTATTGCATTCATGTCATCCAAATTTTCCCCAGAAGATATGCAAAAATAATGCTTCAGATGATCCTCAAATGATGCCATGCTTAAATCTCCTTCAATAGTAAATGACAAAAAAGATGTATTGCATTCATTCATCCTAATTTTCCCCCAGAGTTACGCAAAAATAATGCCTCAAATGATGCGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0096I08-RwzkG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6759" ref_strand="+" ref_description="SGN-M6759 C2_At1g30755 [cosii_markers]">
      <seq>ctctggctcagcatacgtgtgaattatatcacgaactgcacgcactggacagattcgaacaggattatcggaggaaacttgaggaattagattccttaaatctacctcgaaaaggtgaaggtctcatgatgttacagagtgaactaaaacatcaaagaaagattgcgaggagcttgaaaaagaaatctctttgggctaagggtttggaggaggttgtggagaagcttgttgacattgttacttatatacatcaagcaattgtggaagcatttggggacaatggattgacatctgctgtcaaggagccagtgaagaaacaagaaagactgggagtagctggtctggctttacactatgctaacttagttactcaaattgataacattgcttcacggcccacctctcttccgcctaacatgagggatggattatataatggattacctccttccataaaaacggcccttcgttcacgtctgcaggcggttgatgcaaaggaagagctcacaattcctcagattaaagcagagatggaaaaaactcttcagtggcttgtcccagtagctgcagatactacgaaagcacaccaaggctttggatgggttggagagtgggccaacaccggaagcgagtttggcaagaagaacctccacaagtttccctcattcgactgcagacactctaccatgcagacaaacagaaaatggattaccatgtcctcgaactagtgacatggcttcaccgtttgatcagcctggtaagatttaacgggcccaaggctttcccaggacgatcaccaacacgcaaaggacttaatctgcagactgagttgatgatgaatactacctcaaaaacgcctaaggttcagatttctcttgaagataggaacttactcgagaaagtgatgaaacggaaatgtttggtccctggaagaagcaagagccaggagtttctgttgcctaagaatcggaaaaaggtgtgggcgctaagtagaagcatgggtaactcccctcgtaccgactttcaacatccaaaggctactgttttggatatattagatggcttacattagcattttgagttgctaaagagagatctcaagcaaaaaaaagttcatttttttgttttcttgattcttagctccccccttctttggaaccaaaatctctttgtatatagtctctctatcatatggtgattgggaaaattgttatactgtagcatattattatcaccaaaatacatttagattctagtggaagtgaatgttcaagggtgatagggaatgatgtttatttgggcattttgcagccaacttgcaatgaatgttttggtaatatgaagtgtaaccataagaaaaaaaaaaaaaaaaaaaactcgagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0096I08-RwzkG/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0096I08.1" temp_strand="+" temp_description="C04HBa0096I08.1  CU469513.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0096I08 sequenced_by:sanger upload_account_name:uk">
        <position start="18904" stop="23497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19204" g_stop="19223" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19224" i_stop="19815" i_length="592">
            <donor d_prob="0.965" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19816" g_stop="19909" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="114" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19910" i_stop="20098" i_length="189">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20099" g_stop="20196" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="212" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20197" i_stop="20441" i_length="245">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20442" g_stop="20511" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="282" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20512" i_stop="21314" i_length="803">
            <donor d_prob="0.890" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21315" g_stop="21418" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="386" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21419" i_stop="21511" i_length="93">
            <donor d_prob="0.399" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21512" g_stop="21628" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="503" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="21629" i_stop="21764" i_length="136">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21765" g_stop="21841" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="580" r_length="77" r_score="0.948"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="21842" i_stop="21956" i_length="115">
            <donor d_prob="0.106" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21957" g_stop="22001" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="625" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="22002" i_stop="22458" i_length="457">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="22459" g_stop="23186" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="1351" r_length="726" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1357" polyA_stop="1377"/>
      <MATCH_line gen_id="C04HBa0096I08.1" gen_strand="+" ref_id="SGN-M6759" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>1353</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0096I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19204" e_stop="19223"/>
          <exon e_start="19816" e_stop="19909"/>
          <exon e_start="20099" e_stop="20196"/>
          <exon e_start="20442" e_stop="20511"/>
          <exon e_start="21315" e_stop="21418"/>
          <exon e_start="21512" e_stop="21628"/>
          <exon e_start="21765" e_stop="21841"/>
          <exon e_start="21957" e_stop="22001"/>
          <exon e_start="22459" e_stop="23186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGGCTCAGCATACTTCTGTAAGTTCGTACCTTGTTTTGAAGTGCATGGTGGCTTTCTACTAATTTTTGTTTCTCAACATGTTACGTGTTTTACAGTATAAGTAAATCCTTCCTTCTGTTCTTGGAGTGAGAATTTCTTTTCATATCCTTTTTACTTTCATGAACTGTAACAATTTTGGGACAATATTGGAGTGGTTTCTTCTTGAGGGAATGGAGGGTCTTTCAGAAACAGCCTCTCTACCTCACAAGGTAGGGGTAAGGCCTGCATACACTCTACCTTCCCCGGATCCCACTAGCATGTTGTTGGTTTCTTCTCGGCTTTATAACTTCCTTGATGTTATACTAGACCTATTGTATGAGATTTGCCAATATTTACATTTACCAGCAAGAATATTTTCTGATTTATGTTGGTTGTACTGTCTTGTATAAGGAAAAAATATATTAAGAATGGTATGAGTTGAAGTGTAACCAAGACGGGAAGTTACTTGATTCTTTTCCTATGTCCGGTTTTATTTACTCTGAAGTTGATGTTCTCTCTAGAAGTTATGGCTCACATCTATATTGATATTCCAAAGTCATTGATGAGACACTGCCACTGGTATCTTTACAGGAATTATATCATGAAATGCATGCACTGGACAGATTCGAACAGGATTATCGGAGGAAACTTGAGGAATTAGATTCCCTAAATCTACCTCGAAAAGGTATATCAGTGTTACTTTTTTTTTAGTTCTCTGTGATTTGTCATTTGTGCAAACTTAGCTGGATGACGGTTTGAGTAAAAATGTTGTGCAGATTCTTTTTGTGTATATTAAAAATGTCTTCTTTGGATTCTTCATTTTGATAATTTGGTAGATTAACATACAAATTGACACATTTTCTTTCACTTGTAGGGGAAGGTCTCATGATGTTACAGAGTGAGCTAAAACATCAAAGAAAGATTGCGAGGAGCTTGAAAAAGAAATCTCTTTGGGCTAAGGGTTTGGAGGAGGTACTTTGACCAAAACTTTTCTTTATCTCATTTTCAAGTAAAGCATTTTTCACTTTTCTAATAATCAAATTAGTAGAACTCGTAAAAAGAGAACTTTTTCAAAATTACCGTGGAAATTGGTAAGCTCATGGAGGCAACAAGATCTTCATTTGATTTTGTGATTGAAATGAAAATTGTTTTTTTCTTTTAAGAGTGTCATTATTTTCAGCGATAATCACTTAGTGATCCCAAATTAATCATTGTAGGTTGTGGAGAAGCTTGTTGACATTGTTACGTATATACATCAAGCAATTGTGGAAGCATTTGGGGACAACGGTATGAGAGTACATGTATTTTTTTGTTGATCAGTTTAAATTTGATGGCTGTCGTTATCAGCATTCTATTATTTGCAAATAACGAAGCTTAGAGTATCTAACCTTCATTGATGTTTGATAAATGGCTGTTTGCGCTCCACACCACTAAATTGCACCAGCCACTTCATTCTTTTGCCTCAGATACCTTTTACATGTTAACATTTTATCTTATTGAACTATTTTTCATTAATAATGGTTATAGAGGAAATCCTAAGCCAAATCCTGACTTTAAAAAAAAATGTAAAATGGTACGGGAAATTAAACAAAAGGGTAACTCCTGAGGAAAAAGGGAGGACAATCTTCAGTGTTTTTCCTTTTTCGGTCTTCAGTCCAAGTTTTCCAAGTCACTACAATTGCGTAACATTTTAGGAAAGATGACAGAGTTGTGACTAATCATTGATCTGTACATTTACCAAGCGAGGAATTCTTACTAAAGATTACGGCAAAGTCAAGCTATATATTCTCTCCGTTTCAATTTGTTTGCCCTGCTTTCTTTTTTAGTCCATTTCATAAAGTACGTCTCTTTCCTTTTTTGGCTACTCGTTAACTCCAACTGTCTATGTGACACGTTTAAGACCACAAGATTAAAAAATCTTCTTTATTTTCTTTAACTCCGGATCAATCAAAACCACACAAACAAATTGAAATGGGGGGAGTACTCTAGCTATTTACAATGCAGAGTTAACTTGCATATGTACACACATTGTCTCTTCTTTCCCAGAGTATGCTTTCTTAAATATAGACGAATCTCTATGCTTGTTGCAGGATTGACATCTGCTGTCAAGGAGCCTGTGAAGAAACAAGAAAGATTGGGAGTAGCTGGTCTGGCTTTACACTATGCTAACTTAGTTACTCAAATTGATAACATTGTAAGTTTTAGTGCTGAATTAGAGCGATACTGATTGCGCTGTTTACGACTGCTCCAATAGTATTCATAACAATGGGATTTGATATCATGTCAGGCTTCACGGCCCACCGCTCTTCCCCCTAACATGAGGGATGGATTATATAATGGATTGCCTCCTTCCATAAAAACGGCCCTTCGTTCACGTCTGCAGGCGGTTGATGCAAAGGAAGAGGTTTGTCCTCCATATTAATTTCTCATTCTTCCCCCCTTTCTCCCTTTTTCTCTTTTTGGGGTCTAATGATACCTCCCGTTTGCATTTAAGTTCTATATCTGTATAAAATAGTTTCTCCACGTTGTGCTTTTTGCAGCTCACAATTCCGCAGATTAAAGCAGAAATGGAAAAAACTCTTCACTGGCTTGTCCCAGTCGCTGCAGATACTACGAAGTATGTGTTTCGACAAAAGCTCTCCCCCCTAACCACCACCACACACACGCACAAACTTTTGCTAATATATGCTGATTCTTTTTTGTGTTTTTCTCTCTTGGCAATGGGATAACAGAGCACACCAAGGCTTTGGATGGGTTGGAGAGTGGGCCAACACCGGGTTAGTTCCATAAGTCTCTACATGAGCAAAATTGAATATTTACATTTGCAGTTTAGTTTGGATAGCATTCTTCAAGAATATAATATTTGGAGGCGGATGCAGCCATGCACTGTGGGTTCAATTGAACCTCGTTTATTCTATATAACATCATTTGTTTTGATATAATTTTTTGGTTGTGATAGTGAATGTTATTAATAGAGAATATATGATACAACATAACATGAACGATTGGTTCAAAGAAAATATGGTTGTTATATAGTTACATGCTTTATAGGATGCCAGATGGCTATTATAGAGAGGGCTGACTGTATATATAAGCATAATTTCAATAAATATTAGATTTTTGAACCCATAATTCAGTTGTACAATGATATCTGTTAAGGACTTCAAAAAATTGAAACATCAAAGTTTTAAATTTTCGATCAGCTTCTAATGTTATTGGTTTTTTCTCTTTCAGAAGCGAGTTTGGCAAGAAGAACCCTCCACAAGTTTCCCTCATTCGACTGCAGACACTCTACCATGCTGACAAACAGAAAATGGACTACCATGTCCTTGAACTAGTGACATGGCTTCACCGTTTGATCAGCCTGGTAAGATATAATGGGCCCAAGGCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTATATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCATGGATGACAGGGAATGATGTTTATTTGGGCATTTTGCAGCCAACTTACTATGAATGTTTTGGTAATATGAAATGTAACC</genome_strand>
        <mrna_strand>CTCTGGCTCAGCATACGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTATATCACGAACTGCACGCACTGGACAGATTCGAACAGGATTATCGGAGGAAACTTGAGGAATTAGATTCCTTAAATCTACCTCGAAAAG.............................................................................................................................................................................................GTGAAGGTCTCATGATGTTACAGAGTGAACTAAAACATCAAAGAAAGATTGCGAGGAGCTTGAAAAAGAAATCTCTTTGGGCTAAGGGTTTGGAGGAG.....................................................................................................................................................................................................................................................GTTGTGGAGAAGCTTGTTGACATTGTTACTTATATACATCAAGCAATTGTGGAAGCATTTGGGGACAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGACATCTGCTGTCAAGGAGCCAGTGAAGAAACAAGAAAGACTGGGAGTAGCTGGTCTGGCTTTACACTATGCTAACTTAGTTACTCAAATTGATAACATT.............................................................................................GCTTCACGGCCCACCTCTCTTCCGCCTAACATGAGGGATGGATTATATAATGGATTACCTCCTTCCATAAAAACGGCCCTTCGTTCACGTCTGCAGGCGGTTGATGCAAAGGAAGAG........................................................................................................................................CTCACAATTCCTCAGATTAAAGCAGAGATGGAAAAAACTCTTCAGTGGCTTGTCCCAGTAGCTGCAGATACTACGAA...................................................................................................................AGCACACCAAGGCTTTGGATGGGTTGGAGAGTGGGCCAACACCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAGTTTGGCAAGAAGAA-CCTCCACAAGTTTCCCTCATTCGACTGCAGACACTCTACCATGCAGACAAACAGAAAATGGATTACCATGTCCTCGAACTAGTGACATGGCTTCACCGTTTGATCAGCCTGGTAAGATTTAACGGGCCCAAGGCTTTCCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAATACTACCTCAAAAACGCCTAAGGTTCAGATTTCTCTTGAAGATAGGAACTTACTCGAGAAAGTGATGAAACGGAAATGTTTGGTCCCTGGAAGAAGCAAGAGCCAGGAGTTTCTGTTGCCTAAGAATCGGAAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAA-GTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCCCCTTCTTTGGAACCAAAATCTCTTTGTATATAGTCTCTCTATCATATGGTGATTGGGAAAATTGTTATACTGTAGCATATTATTATCACCAAAATACATTTAGATTCTAGTGGAAGTGAATGTTCAAGGGTGATAGGGAATGATGTTTATTTGGGCATTTTGCAGCCAACTTGCAATGAATGTTTTGGTAATATGAAGTGTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0096I08-RwzkG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8345" ref_strand="+" ref_description="SGN-M8345 C2_At4g24175 [cosii_markers]">
      <seq>caaaaatggctaatgtaatgaagcctctgatgaattggccaaaatggcatcactatttatacgttcgcgcttcattcatccactttgttcaatctcaatctcaatctccactcttctcaacctgcaatgttcgccgactgccgtcgttcacggcatcaccttccggttaccggcaagctcattttcgttccggcgcggcacttaaatcacgtgaaagtccattaccgttagatcaatcagagggcgacagcgattccgatgaaaaaacaaggaagagtcgtaacgagaagaagcgtgaagctcgacgcgccgtccggtgggctatggatttagctaagttctctgctcctcaaattaagcgcattctcagagtggcttcaacggagcaagaggtatacgaagccgttatgctggccaagagactaggtcctgatgtacgagaaggaaagcgaaggcaattcagttacataggtagattattgcgagaagttaagcctgaattgatggatggtttaattcaggcaacaaaagatggagaccaaactaaatttcaggctttatctggttcggaactttcggctaccgaagatgttgatgaggaagttgaagagactgaatatgaggatgacgaagagagttctgaggacaatattgctttagccgatagatggtttgatggcttggtcaataaggacgttgacatctctaaagaatctattctctaagtgaggttgattttgatcgcccaggagtacgtggtcttgttaggaatgtacaatcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0096I08-RwzkG/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0096I08.1" temp_strand="+" temp_description="C04HBa0096I08.1  CU469513.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0096I08 sequenced_by:sanger upload_account_name:uk">
        <position start="33948" stop="38533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34248" g_stop="34617" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34618" i_stop="34685" i_length="68">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34686" g_stop="34734" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="419" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34735" i_stop="34819" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34820" g_stop="34871" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="471" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34872" i_stop="37200" i_length="2329">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37201" g_stop="37364" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="635" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37365" i_stop="37657" i_length="293">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37658" g_stop="37771" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="749" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37772" i_stop="38197" i_length="426">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38198" g_stop="38233" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="784" r_length="35" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0096I08.1" gen_strand="+" ref_id="SGN-M8345" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0096I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34248" e_stop="34617"/>
          <exon e_start="34686" e_stop="34734"/>
          <exon e_start="34820" e_stop="34871"/>
          <exon e_start="37201" e_stop="37364"/>
          <exon e_start="37658" e_stop="37771"/>
          <exon e_start="38198" e_stop="38233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGGCTAATGTAATGAAGCCTCTGATGAATTGGCCAAAATGGCATCACTATTTATACGTTCGCGCTTCATTCATCCACTTTGTTCAATCTCAATCTCAATCTCCACTCTTCTCAACCTGCAATGTTCGCCGACTGCCGTCGTTCACGGCATCACCTTCCGGTTACCGGCAAGCTCATTTTCGTTCCGGCGCGGCACTTAAATCACGTGAAAGTCCATTACCGTTAGATCAATCAGAGGGCGACAGCGATTCCGATGAAAAAACAAGGAAGAGTCGTAACGAGAAGAAGCGTGAAGCTCGACGCGCCGTCCGGTGGGCTATGGATTTAGCTAAGTTCTCTGCTCCTCAAATTAAGCGCATTCTCAGGTAATTAGATAACTTTCTAGTTACAATTGACTAAATGATATAAGTTAATGTTTCATATTTCACTGTAGAGTGGCTTCAACGGAGCAAGAGGTATACGAAGCCGTTATGCTGGCCAAGGTAGTTTTATGTTCTATCAATTGTGAGGTATTATTGCTATTTTTTCGTTGTTAGTGAGTGTAACATGTTTGCTCATTTGCCGCAGAGACTAGGTCCTGATGTACGAGAAGGAAAGCGAAGGCAATTCAGTTACATAGGTATGCTTTAAGATGCTTACTTTCTCCATCAAAGTGATCTTTATATCCAAATGTTTTATAGCATCGTTCTGTATTCAGATAAGCAGAAGTTGTAAGTTATAGTACCTTTAATCTATTAGATATCTCAGTTGTATACTTATATCCAATGTAGGATTAATATAGTCAATATTGATTACTTGATAAGTAAAAAGGAACTCGCAAATTACTTAATTAGCATGGTAGTGAACTGTTTTAAAAGATGGCATATAATCAAGAGCATTTGGTAGGAAAGAAGGAGAATATATGGAGTATAAGGATTTAGGAAAGAAGTATAGTAATCTCAATTTGCTAAAATTGAAAAAGCAGATGAGTTAGTAGTATGCAGTGCCGTATTTGAAATTCATAAACTTAATGTTTTACCTTGATTCAAATCACATTACACTTTTATCCATTATTTTGAATTCATTTGAAACTACACTCTAAAACATGACATTTTAAATTTACAAGTATGGATCGCCTCTTTTTAGCAGATGTCTCTATCAAAATGGGTCTATTACTTTCCTCGACCCCTAAAGGACAAACATGTTGACATGAATCCGTATATGGTTGTAGTTTACTTACACCAACAACATCAAATTATTAGAGAAGAACAGTACCCTTGGAGTTGTATTCTTCCTTACTAGTTGGTGCTTATCCCGCATATATATATTCTACCTTAGTGTTGGTGCTTATCCCGCATATATATAGTCTACCTTAGTGCTGGTGCCATCTTCTTTTTTATTTATTTGTATAAAATGGCGGGGGGGGGGGGGTTTCGACATTGAGAGGGACTACACTGGGTATGATGATGTTGTAGGATTTTTAGTGCTGGGGCTACCTAAAACCGCTCTTCCAGTGATTTTGTGATGTTAGAAACAATTCATAAATTAACAACTCAAGAAGAGGGAAGCATTTTTTGTCAATCTATTGTCGGTCATATATAATCTAAATTTCTCTGTATTGTTCAACCTCTGATCTTGTAAACATCTTAGTTTTCTTTGCCTCACTGGAACAACTATGGGATCTATGGTTCTTTCCGTCTGATAAATTCAGTAACTGATTTATCATAAGCTTTCTCTAGTCATCAATTTTACGCTATAAAAACAAATACTTGTGTTACACAAAAAAATAACAACAATTGGTGAAAGAAGTTTATGTCGCATAGAATCTTCTTGTAGTTCATATATTTTGCATCCACAAAAGCAAATAATTTATGAGATGTAATAGTAGGCTTTTAGGGGATTGATGCAAAAAGATAGAACTGAGCAGTAGGAATGCTTGTGAAACTGCCTTCAGATCTGATGCATAACGTTTGGTAATTTATCGAGTTCCTTTTGCAAAGTTTTTCATTCTCACCATTTGTCATCGGAGTGGCTTCTGTGACAGATTCAATGGAAAGGGCTCAAAGGAAATTTGATCTCTTTGGTGCAGAATGGAATGGATAAACAAATTTGTGAGTTGAGGTTGATGATCCCAAAACGTTATTGGGATAGCAAAAATAGAAAATTAGTGAATGGTAATAGAGTTCTAATTTGAATCCTTCTAATTTCCTTATCTCATACTTTTTAGGAGGTTCATGCAAATGGAGGGTAAACACTGAATAGTAATACTGCAGCGCTGTCAATTGAAAGAAGAGGAATCAACTTGATATTATTCTTGAACAGAAGCACACTAATAATAAATTTATTCTTTTGAGAAGGGTCATTCTAGTGAAAAAGGTGTTGGTGTGTCACTTAATGTTTGACCTATATATGCTATCTCTTATTAGAAGATCCAGCAAATTATATACAGCTGTTTGAGTACATACATGTTAATAACAGAGGAAGCAATCTGAAAATTAGATATCCCTTGTGAATGCATTATCCACTTCCTGCCTTTTCATTTCTTGTTCCAGGCCACAGTGAATATGCTTGTCATGTCTTTTGTTCCATTTTCTCTAGAACTGTGCTTTGTATAATTGATTTGTGAACTGTTCATTCCCATGACTGAAAAAATCATGATGTTCGGTATGAGTTGTGGTTTATTAATTGATTGATCCCTCATAGTAATTGTGATGCATCATATTACTAAAGTTCTATTAATGTTGTTATTTATCTACATTTTGATAAGAGATTGTTTACATTGATGGTTTGAATTCTAAAATCTATGCACTCATAAACCATGGAATTTTTCTGCTGAATATTTTGGGAGTAAGTTAACCTTGGAAATGTTTGCAGTGTTATAATTTCAGTTTCTTGTCTTGAAATTTGATCACATGAAATTAATGTATGTTGGATCTATATGCTCACGATGTAATATGAATTCATGTTAGGTAGATTATTGCGAGAAGTTAAGCCTGAATTGATGGATGGTTTAATTCAGGCAACAAAAGATGGAGACCAAACTAAATTTCAGGCTTTATCTGGTTCGGAACTTTCGGCTACCGAAGATGTTGATGAGGAAGTTGAAGAGACTGAATATGAGGATGACGAAGAGGTATGTCATAATCTCACTCCTCATTTTGGGGATCAAATTTCTTTGGCTGCTTTACTGTGTTTAAAGTTATGACTGAGCACAAGAAACTACAATCGCGAATCTATTTCCATGAAAAATGAACAAGTATGAGAACAACTGTTCTGCTCGTCTGTTTAATAAAAGAGCTGATTACGAAACCTGCATAATGTGGGTTAGATAACATAACAGGACAACAATTTAAATTTTACTTGGGAACTAATTTCAGGACTGCAATTGAAAGTTTGAAGTTCTCTTTTTCTTGTGCTTATTTTCAGAGTTCTGAGGACAATATTGCTTTAGCCGATAGATGGTTTGATGGCTTGGTCAATAAGGACGTTGACATCTCTAAAGAAATCTATTCTCTAAGTGAGGTTGATTTTGATCG-CCAGGTTAGTTCAGATGTTATACGCAGGTCTGGAATTATCTTCTTTTTTGGATTTTCTGGTGTATAAGTTGAATTGACACATAATTTTATGATTTTCATGCTCAATCTCTTCTTGTATATGTTCATTTCAAAAGACAAATAATCGGTAAAGGAAAACTAGTAATGAAGAATTAATATGGACAGATCAGTATTTCAGGCTGTCAAATGTGCACCCTGACCTTAAATGACATAGTTGTTAGCTTAGTTAACTGCGCGTTTCATTACAATTAGCTTAAAGGTGTCAACAATTTACTTGTGCTGTTTTTATGGAATAAGCTGCCCGTACTTGAGATATTAAAGAAAAATTATGTGTCTTTTGTATGTAAATTATAATTTGCTTGTCTTGCCATGGTATAATATTTATCTGATTATGTTCTATCTCGTTGTACAGGAGTTACGTGGTCTTGTTAGGAATGTACAATCAATA</genome_strand>
        <mrna_strand>CAAAAATGGCTAATGTAATGAAGCCTCTGATGAATTGGCCAAAATGGCATCACTATTTATACGTTCGCGCTTCATTCATCCACTTTGTTCAATCTCAATCTCAATCTCCACTCTTCTCAACCTGCAATGTTCGCCGACTGCCGTCGTTCACGGCATCACCTTCCGGTTACCGGCAAGCTCATTTTCGTTCCGGCGCGGCACTTAAATCACGTGAAAGTCCATTACCGTTAGATCAATCAGAGGGCGACAGCGATTCCGATGAAAAAACAAGGAAGAGTCGTAACGAGAAGAAGCGTGAAGCTCGACGCGCCGTCCGGTGGGCTATGGATTTAGCTAAGTTCTCTGCTCCTCAAATTAAGCGCATTCTCAG....................................................................AGTGGCTTCAACGGAGCAAGAGGTATACGAAGCCGTTATGCTGGCCAAG.....................................................................................AGACTAGGTCCTGATGTACGAGAAGGAAAGCGAAGGCAATTCAGTTACATAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATTATTGCGAGAAGTTAAGCCTGAATTGATGGATGGTTTAATTCAGGCAACAAAAGATGGAGACCAAACTAAATTTCAGGCTTTATCTGGTTCGGAACTTTCGGCTACCGAAGATGTTGATGAGGAAGTTGAAGAGACTGAATATGAGGATGACGAAGAG.....................................................................................................................................................................................................................................................................................................AGTTCTGAGGACAATATTGCTTTAGCCGATAGATGGTTTGATGGCTTGGTCAATAAGGACGTTGACATCTCTAAAG-AATCTATTCTCTAAGTGAGGTTGATTTTGATCGCCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GAG-TACGTGGTCTTGTTAGGAATGTACAATCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2843" PGL_stop="3399"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2843" e_stop="3399"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2843" e_stop="3399" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2843" stop="3399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M359-R" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2852" stop="3396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M359-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTTACATTCCATCCAACCATGGAGGAAGCCTGAAATCATCAATTGAGAAGACAGCCTTCAATTCAGGAGAAGATACCAATTTCAAACGTGGGGCAGAAGGAGCACTGGAGTATTTCCTGCCAACTGGATATATAACCTGTCACATTAGTAAAGTTAATCAAAAGAGAACCGAGAAAGGAAGAAAAAATGACAAGCCAAAAGATGATTAGACAAACAAATTACTCATTTAGTCTCAATGATAAATACAAGCTGAAGAAACAATTAAACCAACAAATGAACTATTTAACCTCCACAAAAAGTTTCAGTTTTAACACTTAAATGATGCAGCTTTAGGAATGATATGAAAGCAAGTAAATGACAAAAAAAATGTATTGCATTCATTCATCCAAATTTTCCCCAGAAGATATGCAAAAATAATGCTTCAAATGATCCTCAAATGATGCCATGCTTAAATCTCCTTCAATAGTAAATGACAAAAAAGATGTATTGCATTCATTCATCCTAATTTTCCCCCAGAGTTACGCAAAAATAATGCCTCAAATGATGCGATGCTTA</gDNA_template>
            <first_frame> N  L  H  S  I  Q  P  W  R  K  P  E  I  I  N  *  E  D  S  L  Q  F  R  R  R  Y  Q  F  Q  T  W  G  R  R  S  T  G  V  F  P  A  N  W  I  Y  N  L  S  H  *  *  S  *  S  K  E  N  R  E  R  K  K  K  *  Q  A  K  R  *  L  D  K  Q  I  T  H  L  V  S  M  I  N  T  S  *  R  N  N  *  T  N  K  *  T  I  *  P  P  Q  K  V  S  V  L  T  L  K  *  C  S  F  R  N  D  M  K  A  S  K  *  Q  K  K  C  I  A  F  I  H  P  N  F  P  Q  K  I  C  K  N  N  A  S  N  D  P  Q  M  M  P  C  L  N  L  L  Q  *  *  M  T  K  K  M  Y  C  I  H  S  S  *  F  S  P  R  V  T  Q  K  *  C  L  K  *  C  D  A   </first_frame>
            <second_frame>  T  Y  I  P  S  N  H  G  G  S  L  K  S  S  I  E  K  T  A  F  N  S  G  E  D  T  N  F  K  R  G  A  E  G  A  L  E  Y  F  L  P  T  G  Y  I  T  C  H  I  S  K  V  N  Q  K  R  T  E  K  G  R  K  N  D  K  P  K  D  D  *  T  N  K  L  L  I  *  S  Q  *  *  I  Q  A  E  E  T  I  K  P  T  N  E  L  F  N  L  H  K  K  F  Q  F  *  H  L  N  D  A  A  L  G  M  I  *  K  Q  V  N  D  K  K  N  V  L  H  S  F  I  Q  I  F  P  R  R  Y  A  K  I  M  L  Q  M  I  L  K  *  C  H  A  *  I  S  F  N  S  K  *  Q  K  R  C  I  A  F  I  H  P  N  F  P  P  E  L  R  K  N  N  A  S  N  D  A  M  L  </second_frame>
            <third_frame>   L  T  F  H  P  T  M  E  E  A  *  N  H  Q  L  R  R  Q  P  S  I  Q  E  K  I  P  I  S  N  V  G  Q  K  E  H  W  S  I  S  C  Q  L  D  I  *  P  V  T  L  V  K  L  I  K  R  E  P  R  K  E  E  K  M  T  S  Q  K  M  I  R  Q  T  N  Y  S  F  S  L  N  D  K  Y  K  L  K  K  Q  L  N  Q  Q  M  N  Y  L  T  S  T  K  S  F  S  F  N  T  *  M  M  Q  L  *  E  *  Y  E  S  K  *  M  T  K  K  M  Y  C  I  H  S  S  K  F  S  P  E  D  M  Q  K  *  C  F  K  *  S  S  N  D  A  M  L  K  S  P  S  I  V  N  D  K  K  D  V  L  H  S  F  I  L  I  F  P  Q  S  Y  A  K  I  M  P  Q  M  M  R  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0096I08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2844" stop="3053"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TYIPSNHGGSLKSSIEKTAFNSGEDTNFKRGAEGALEYFLPTGYITCHISKVNQKRTEKGRKNDKPKDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="19204" PGL_stop="23186"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19204" e_stop="19223"/>
            <exon e_start="19816" e_stop="19909"/>
            <exon e_start="20099" e_stop="20196"/>
            <exon e_start="20442" e_stop="20511"/>
            <exon e_start="21315" e_stop="21418"/>
            <exon e_start="21512" e_stop="21628"/>
            <exon e_start="21765" e_stop="21841"/>
            <exon e_start="21957" e_stop="22001"/>
            <exon e_start="22459" e_stop="23186"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.993" e_score="0.900"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="0.957"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="0.980"/>
          <exon-intron don_prob="0.890" acc_prob="0.999" e_score="0.971"/>
          <exon-intron don_prob="0.399" acc_prob="0.969" e_score="0.981"/>
          <exon-intron don_prob="0.972" acc_prob="0.999" e_score="0.974"/>
          <exon-intron don_prob="0.106" acc_prob="0.990" e_score="0.948"/>
          <exon-intron don_prob="0.962" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="19204" e_stop="19223" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.993">
            <gDNA_intron_boundary i_start="19224" i_stop="19815" i_length="592"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="19816" e_stop="19909" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="19910" i_stop="20098" i_length="189"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="20099" e_stop="20196" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="20197" i_stop="20441" i_length="245"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="20442" e_stop="20511" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.890" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20512" i_stop="21314" i_length="803"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="21315" e_stop="21418" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.399" acc_prob="0.969">
            <gDNA_intron_boundary i_start="21419" i_stop="21511" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="0.974">
            <gDNA_exon_boundary e_start="21512" e_stop="21628" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="0.972" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21629" i_stop="21764" i_length="136"/>
          </intron>
          <exon e_serial="7" e_score="0.948">
            <gDNA_exon_boundary e_start="21765" e_stop="21841" e_length="77"/>
          </exon>
          <intron i_serial="7" don_prob="0.106" acc_prob="0.990">
            <gDNA_intron_boundary i_start="21842" i_stop="21956" i_length="115"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="21957" e_stop="22001" e_length="45"/>
          </exon>
          <intron i_serial="8" don_prob="0.962" acc_prob="0.972">
            <gDNA_intron_boundary i_start="22002" i_stop="22458" i_length="457"/>
          </intron>
          <exon e_serial="9" e_score="0.948">
            <gDNA_exon_boundary e_start="22459" e_stop="23186" e_length="728"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19204" stop="19223"/>
              <exon start="19816" stop="19909"/>
              <exon start="20099" stop="20196"/>
              <exon start="20442" stop="20511"/>
              <exon start="21315" stop="21418"/>
              <exon start="21512" stop="21628"/>
              <exon start="21765" stop="21841"/>
              <exon start="21957" stop="22001"/>
              <exon start="22459" stop="23186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6759" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTGGCTCAGCATACTTCT : GAATTATATCATGAAATGCATGCACTGGACAGATTCGAACAGGATTATCGGAGGAAACTTGAGGAATTAGATTCCCTAAATCTACCTCGAAAAG : GGGAAGGTCTCATGATGTTACAGAGTGAGCTAAAACATCAAAGAAAGATTGCGAGGAGCTTGAAAAAGAAATCTCTTTGGGCTAAGGGTTTGGAGGAG : GTTGTGGAGAAGCTTGTTGACATTGTTACGTATATACATCAAGCAATTGTGGAAGCATTTGGGGACAACG : GATTGACATCTGCTGTCAAGGAGCCTGTGAAGAAACAAGAAAGATTGGGAGTAGCTGGTCTGGCTTTACACTATGCTAACTTAGTTACTCAAATTGATAACATT : GCTTCACGGCCCACCGCTCTTCCCCCTAACATGAGGGATGGATTATATAATGGATTGCCTCCTTCCATAAAAACGGCCCTTCGTTCACGTCTGCAGGCGGTTGATGCAAAGGAAGAG : CTCACAATTCCGCAGATTAAAGCAGAAATGGAAAAAACTCTTCACTGGCTTGTCCCAGTCGCTGCAGATACTACGAA : AGCACACCAAGGCTTTGGATGGGTTGGAGAGTGGGCCAACACCGG : AAGCGAGTTTGGCAAGAAGAACCCTCCACAAGTTTCCCTCATTCGACTGCAGACACTCTACCATGCTGACAAACAGAAAATGGACTACCATGTCCTTGAACTAGTGACATGGCTTCACCGTTTGATCAGCCTGGTAAGATATAATGGGCCCAAGGCTTTTCCAGGACGATCACCAACACGCAAAGGACTTAATCTGCAGACTGAGTTGATGATGAACACCAACTCAAAAACACCTAAGATTCAGATTTCTCTCGAAGATAGGACTTTACTAGAGAAAGTGATGAAACAGAAATGTTTGGTTCCTGGAAGAAGCAAGAGTCAGGAGTTTCTGTTGCCCAAGAATCGGCAAAAGGTGTGGGCGCTAAGTAGAAGCATGGGTAACTCCCCTCGTACCGACTTTCAACATCCAAAGGCTACTGTTTTGGATATATTAGATGGCTTACATTAGCATTTTGAGTTGCTAAAGAGAGATCTCAAGCAAAAAAAAGGTTCATTTTTTTGTTTTCTTGATTCTTAGCTCCCTCCTCCTATGGAACTAAAGCCTCTTTGTATATAGTCTCTCCATCATATGGTGATTGGGAAAAATGTTATACTGTAGCATATTATTATCGCCAAAATACATTTAGATTCTAGTGGAATTGAATGTTCATGGATGACAGGGAATGATGTTTATTTGGGCATTTTGCAGCCAACTTACTATGAATGTTTTGGTAATATGAAATGTAACC</gDNA_template>
            <first_frame> L  W  L  S  I  L  L :   N  Y  I  M  K  C  M  H  W  T  D  S  N  R  I  I  G  G  N  L  R  N  *  I  P  *  I  Y  L  E  K  :  G  K  V  S  *  C  Y  R  V  S  *  N  I  K  E  R  L  R  G  A  *  K  R  N  L  F  G  L  R  V  W  R  R :   L  W  R  S  L  L  T  L  L  R  I  Y  I  K  Q  L  W  K  H  L  G  T  T  :  D  *  H  L  L  S  R  S  L  *  R  N  K  K  D  W  E  *  L  V  W  L  Y  T  M  L  T  *  L  L  K  L  I  T  L :   L  H  G  P  P  L  F  P  L  T  *  G  M  D  Y  I  M  D  C  L  L  P  *  K  R  P  F  V  H  V  C  R  R  L  M  Q  R  K  S :   S  Q  F  R  R  L  K  Q  K  W  K  K  L  F  T  G  L  S  Q  S  L  Q  I  L  R   : K  H  T  K  A  L  D  G  L  E  S  G  P  T  P   : E  A  S  L  A  R  R  T  L  H  K  F  P  S  F  D  C  R  H  S  T  M  L  T  N  R  K  W  T  T  M  S  L  N  *  *  H  G  F  T  V  *  S  A  W  *  D  I  M  G  P  R  L  F  Q  D  D  H  Q  H  A  K  D  L  I  C  R  L  S  *  *  *  T  P  T  Q  K  H  L  R  F  R  F  L  S  K  I  G  L  Y  *  R  K  *  *  N  R  N  V  W  F  L  E  E  A  R  V  R  S  F  C  C  P  R  I  G  K  R  C  G  R  *  V  E  A  W  V  T  P  L  V  P  T  F  N  I  Q  R  L  L  F  W  I  Y  *  M  A  Y  I  S  I  L  S  C  *  R  E  I  S  S  K  K  K  V  H  F  F  V  F  L  I  L  S  S  L  L  L  W  N  *  S  L  F  V  Y  S  L  S  I  I  W  *  L  G  K  M  L  Y  C  S  I  L  L  S  P  K  Y  I  *  I  L  V  E  L  N  V  H  G  *  Q  G  M  M  F  I  W  A  F  C  S  Q  L  T  M  N  V  L  V  I  *  N  V  T </first_frame>
            <second_frame>  S  G  S  A  Y  F   : *  I  I  S  *  N  A  C  T  G  Q  I  R  T  G  L  S  E  E  T  *  G  I  R  F  P  K  S  T  S  K  R :   G  R  S  H  D  V  T  E  *  A  K  T  S  K  K  D  C  E  E  L  E  K  E  I  S  L  G  *  G  F  G  G   : G  C  G  E  A  C  *  H  C  Y  V  Y  T  S  S  N  C  G  S  I  W  G  Q  R :   I  D  I  C  C  Q  G  A  C  E  E  T  R  K  I  G  S  S  W  S  G  F  T  L  C  *  L  S  Y  S  N  *  *  H   : C  F  T  A  H  R  S  S  P  *  H  E  G  W  I  I  *  W  I  A  S  F  H  K  N  G  P  S  F  T  S  A  G  G  *  C  K  G  R   : A  H  N  S  A  D  *  S  R  N  G  K  N  S  S  L  A  C  P  S  R  C  R  Y  Y  E  :  S  T  P  R  L  W  M  G  W  R  V  G  Q  H  R  :  K  R  V  W  Q  E  E  P  S  T  S  F  P  H  S  T  A  D  T  L  P  C  *  Q  T  E  N  G  L  P  C  P  *  T  S  D  M  A  S  P  F  D  Q  P  G  K  I  *  W  A  Q  G  F  S  R  T  I  T  N  T  Q  R  T  *  S  A  D  *  V  D  D  E  H  Q  L  K  N  T  *  D  S  D  F  S  R  R  *  D  F  T  R  E  S  D  E  T  E  M  F  G  S  W  K  K  Q  E  S  G  V  S  V  A  Q  E  S  A  K  G  V  G  A  K  *  K  H  G  *  L  P  S  Y  R  L  S  T  S  K  G  Y  C  F  G  Y  I  R  W  L  T  L  A  F  *  V  A  K  E  R  S  Q  A  K  K  R  F  I  F  L  F  S  *  F  L  A  P  S  S  Y  G  T  K  A  S  L  Y  I  V  S  P  S  Y  G  D  W  E  K  C  Y  T  V  A  Y  Y  Y  R  Q  N  T  F  R  F  *  W  N  *  M  F  M  D  D  R  E  *  C  L  F  G  H  F  A  A  N  L  L  *  M  F  W  *  Y  E  M  *   </second_frame>
            <third_frame>   L  A  Q  H  T  S  :  E  L  Y  H  E  M  H  A  L  D  R  F  E  Q  D  Y  R  R  K  L  E  E  L  D  S  L  N  L  P  R  K   : G  E  G  L  M  M  L  Q  S  E  L  K  H  Q  R  K  I  A  R  S  L  K  K  K  S  L  W  A  K  G  L  E  E  :  V  V  E  K  L  V  D  I  V  T  Y  I  H  Q  A  I  V  E  A  F  G  D  N   : G  L  T  S  A  V  K  E  P  V  K  K  Q  E  R  L  G  V  A  G  L  A  L  H  Y  A  N  L  V  T  Q  I  D  N  I  :  A  S  R  P  T  A  L  P  P  N  M  R  D  G  L  Y  N  G  L  P  P  S  I  K  T  A  L  R  S  R  L  Q  A  V  D  A  K  E  E  :  L  T  I  P  Q  I  K  A  E  M  E  K  T  L  H  W  L  V  P  V  A  A  D  T  T  K :   A  H  Q  G  F  G  W  V  G  E  W  A  N  T  G :   S  E  F  G  K  K  N  P  P  Q  V  S  L  I  R  L  Q  T  L  Y  H  A  D  K  Q  K  M  D  Y  H  V  L  E  L  V  T  W  L  H  R  L  I  S  L  V  R  Y  N  G  P  K  A  F  P  G  R  S  P  T  R  K  G  L  N  L  Q  T  E  L  M  M  N  T  N  S  K  T  P  K  I  Q  I  S  L  E  D  R  T  L  L  E  K  V  M  K  Q  K  C  L  V  P  G  R  S  K  S  Q  E  F  L  L  P  K  N  R  Q  K  V  W  A  L  S  R  S  M  G  N  S  P  R  T  D  F  Q  H  P  K  A  T  V  L  D  I  L  D  G  L  H  *  H  F  E  L  L  K  R  D  L  K  Q  K  K  G  S  F  F  C  F  L  D  S  *  L  P  P  P  M  E  L  K  P  L  C  I  *  S  L  H  H  M  V  I  G  K  N  V  I  L  *  H  I  I  I  A  K  I  H  L  D  S  S  G  I  E  C  S  W  M  T  G  N  D  V  Y  L  G  I  L  Q  P  T  Y  Y  E  C  F  G  N  M  K  C  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0096I08.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19206" stop="19223"/>
                    <exon start="19816" stop="19909"/>
                    <exon start="20099" stop="20196"/>
                    <exon start="20442" stop="20511"/>
                    <exon start="21315" stop="21418"/>
                    <exon start="21512" stop="21628"/>
                    <exon start="21765" stop="21841"/>
                    <exon start="21957" stop="22001"/>
                    <exon start="22459" stop="22906"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1068</number_coding_nucleotides>
                  <number_encoded_amino_acids>356</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAQHTSELYHEMHALDRFEQDYRRKLEELDSLNLPRKGEGLMMLQSELKHQRKIARSLKKKSLWAKGLEEVVEKLVDIVTYIHQAIVEAFGDNGLTSAVKEPVKKQERLGVAGLALHYANLVTQIDNIASRPTALPPNMRDGLYNGLPPSIKTALRSRLQAVDAKEELTIPQIKAEMEKTLHWLVPVAADTTKAHQGFGWVGEWANTGSEFGKKNPPQVSLIRLQTLYHADKQKMDYHVLELVTWLHRLISLVRYNGPKAFPGRSPTRKGLNLQTELMMNTNSKTPKIQISLEDRTLLEKVMKQKCLVPGRSKSQEFLLPKNRQKVWALSRSMGNSPRTDFQHPKATVLDILDGLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="34248" PGL_stop="38233"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34248" e_stop="34617"/>
            <exon e_start="34686" e_stop="34734"/>
            <exon e_start="34820" e_stop="34871"/>
            <exon e_start="37201" e_stop="37364"/>
            <exon e_start="37658" e_stop="37771"/>
            <exon e_start="38198" e_stop="38233"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.994" e_score="0.974"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34248" e_stop="34617" e_length="370"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="34618" i_stop="34685" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34686" e_stop="34734" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34735" i_stop="34819" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34820" e_stop="34871" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.863">
            <gDNA_intron_boundary i_start="34872" i_stop="37200" i_length="2329"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37201" e_stop="37364" e_length="164"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.930">
            <gDNA_intron_boundary i_start="37365" i_stop="37657" i_length="293"/>
          </intron>
          <exon e_serial="5" e_score="0.974">
            <gDNA_exon_boundary e_start="37658" e_stop="37771" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.967" acc_prob="0.994">
            <gDNA_intron_boundary i_start="37772" i_stop="38197" i_length="426"/>
          </intron>
          <exon e_serial="6" e_score="0.972">
            <gDNA_exon_boundary e_start="38198" e_stop="38233" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34248" stop="34617"/>
              <exon start="34686" stop="34734"/>
              <exon start="34820" stop="34871"/>
              <exon start="37201" stop="37364"/>
              <exon start="37658" stop="37771"/>
              <exon start="38198" stop="38233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8345" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAATGGCTAATGTAATGAAGCCTCTGATGAATTGGCCAAAATGGCATCACTATTTATACGTTCGCGCTTCATTCATCCACTTTGTTCAATCTCAATCTCAATCTCCACTCTTCTCAACCTGCAATGTTCGCCGACTGCCGTCGTTCACGGCATCACCTTCCGGTTACCGGCAAGCTCATTTTCGTTCCGGCGCGGCACTTAAATCACGTGAAAGTCCATTACCGTTAGATCAATCAGAGGGCGACAGCGATTCCGATGAAAAAACAAGGAAGAGTCGTAACGAGAAGAAGCGTGAAGCTCGACGCGCCGTCCGGTGGGCTATGGATTTAGCTAAGTTCTCTGCTCCTCAAATTAAGCGCATTCTCAG : AGTGGCTTCAACGGAGCAAGAGGTATACGAAGCCGTTATGCTGGCCAAG : AGACTAGGTCCTGATGTACGAGAAGGAAAGCGAAGGCAATTCAGTTACATAG : GTAGATTATTGCGAGAAGTTAAGCCTGAATTGATGGATGGTTTAATTCAGGCAACAAAAGATGGAGACCAAACTAAATTTCAGGCTTTATCTGGTTCGGAACTTTCGGCTACCGAAGATGTTGATGAGGAAGTTGAAGAGACTGAATATGAGGATGACGAAGAG : AGTTCTGAGGACAATATTGCTTTAGCCGATAGATGGTTTGATGGCTTGGTCAATAAGGACGTTGACATCTCTAAAGAAATCTATTCTCTAAGTGAGGTTGATTTTGATCGCCAG : GAGTTACGTGGTCTTGTTAGGAATGTACAATCAATA</gDNA_template>
            <first_frame> Q  K  W  L  M  *  *  S  L  *  *  I  G  Q  N  G  I  T  I  Y  T  F  A  L  H  S  S  T  L  F  N  L  N  L  N  L  H  S  S  Q  P  A  M  F  A  D  C  R  R  S  R  H  H  L  P  V  T  G  K  L  I  F  V  P  A  R  H  L  N  H  V  K  V  H  Y  R  *  I  N  Q  R  A  T  A  I  P  M  K  K  Q  G  R  V  V  T  R  R  S  V  K  L  D  A  P  S  G  G  L  W  I  *  L  S  S  L  L  L  K  L  S  A  F  S   : E  W  L  Q  R  S  K  R  Y  T  K  P  L  C  W  P  R :   D  *  V  L  M  Y  E  K  E  S  E  G  N  S  V  T  *  :  V  D  Y  C  E  K  L  S  L  N  *  W  M  V  *  F  R  Q  Q  K  M  E  T  K  L  N  F  R  L  Y  L  V  R  N  F  R  L  P  K  M  L  M  R  K  L  K  R  L  N  M  R  M  T  K  R :   V  L  R  T  I  L  L  *  P  I  D  G  L  M  A  W  S  I  R  T  L  T  S  L  K  K  S  I  L  *  V  R  L  I  L  I  A  R :   S  Y  V  V  L  L  G  M  Y  N  Q   </first_frame>
            <second_frame>  K  N  G  *  C  N  E  A  S  D  E  L  A  K  M  A  S  L  F  I  R  S  R  F  I  H  P  L  C  S  I  S  I  S  I  S  T  L  L  N  L  Q  C  S  P  T  A  V  V  H  G  I  T  F  R  L  P  A  S  S  F  S  F  R  R  G  T  *  I  T  *  K  S  I  T  V  R  S  I  R  G  R  Q  R  F  R  *  K  N  K  E  E  S  *  R  E  E  A  *  S  S  T  R  R  P  V  G  Y  G  F  S  *  V  L  C  S  S  N  *  A  H  S  Q  :  S  G  F  N  G  A  R  G  I  R  S  R  Y  A  G  Q   : E  T  R  S  *  C  T  R  R  K  A  K  A  I  Q  L  H  R :   *  I  I  A  R  S  *  A  *  I  D  G  W  F  N  S  G  N  K  R  W  R  P  N  *  I  S  G  F  I  W  F  G  T  F  G  Y  R  R  C  *  *  G  S  *  R  D  *  I  *  G  *  R  R   : E  F  *  G  Q  Y  C  F  S  R  *  M  V  *  W  L  G  Q  *  G  R  *  H  L  *  R  N  L  F  S  K  *  G  *  F  *  S  P   : G  V  T  W  S  C  *  E  C  T  I  N  </second_frame>
            <third_frame>   K  M  A  N  V  M  K  P  L  M  N  W  P  K  W  H  H  Y  L  Y  V  R  A  S  F  I  H  F  V  Q  S  Q  S  Q  S  P  L  F  S  T  C  N  V  R  R  L  P  S  F  T  A  S  P  S  G  Y  R  Q  A  H  F  R  S  G  A  A  L  K  S  R  E  S  P  L  P  L  D  Q  S  E  G  D  S  D  S  D  E  K  T  R  K  S  R  N  E  K  K  R  E  A  R  R  A  V  R  W  A  M  D  L  A  K  F  S  A  P  Q  I  K  R  I  L  R :   V  A  S  T  E  Q  E  V  Y  E  A  V  M  L  A  K  :  R  L  G  P  D  V  R  E  G  K  R  R  Q  F  S  Y  I   : G  R  L  L  R  E  V  K  P  E  L  M  D  G  L  I  Q  A  T  K  D  G  D  Q  T  K  F  Q  A  L  S  G  S  E  L  S  A  T  E  D  V  D  E  E  V  E  E  T  E  Y  E  D  D  E  E  :  S  S  E  D  N  I  A  L  A  D  R  W  F  D  G  L  V  N  K  D  V  D  I  S  K  E  I  Y  S  L  S  E  V  D  F  D  R  Q  :  E  L  R  G  L  V  R  N  V  Q  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0096I08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34250" stop="34617"/>
                    <exon start="34686" stop="34734"/>
                    <exon start="34820" stop="34871"/>
                    <exon start="37201" stop="37364"/>
                    <exon start="37658" stop="37771"/>
                    <exon start="38198" stop="38233"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMANVMKPLMNWPKWHHYLYVRASFIHFVQSQSQSPLFSTCNVRRLPSFTASPSGYRQAHFRSGAALKSRESPLPLDQSEGDSDSDEKTRKSRNEKKREARRAVRWAMDLAKFSAPQIKRILRVASTEQEVYEAVMLAKRLGPDVREGKRRQFSYIGRLLREVKPELMDGLIQATKDGDQTKFQALSGSELSATEDVDEEVEETEYEDDEESSEDNIALADRWFDGLVNKDVDISKEIYSLSEVDFDRQELRGLVRNVQSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 7 chains have been computed
$ 
$ memory statistics:
$ 8384 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2096 bytes was the average size of a spliced alignment
$ 8296 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2765 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 7 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:22:18
-->
