<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 17:20:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M387-F" ref_strand="+" ref_description="SGN-M387-F TG49-F [rflp_markers_forward]">
      <seq>attcgtttttatttactcttgctttataccaaaaattgataattttttagattcacaaatgtgttgatagcggaggaaaggtgctcatccctgcatttgctcttggaagagctcaggtttttattctttattttggctactttataaatcaagtctattttttttttccttttttctttttgataactgtggtgtctgggctagcttgtgcgtatctcaactaattctactggatacttatcaataggggtgggtgttcgggtcttcagttcaattttatcaaactttgattcggttgtttggttatggaaacatgtgcaacaaacaccgaaccaatttagttcagtttttcaaagtttgttcaatttggtcttctgaaacgttttctcgacgcatatgagaaacaaaataaggaccaaaccagaataaatctaacgttaatactataattataccaatatatggtactaaattactaattagaccaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="15042" stop="16134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15342" g_stop="15834" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-M387-F" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M387-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15342" e_stop="15834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGTTTTTATTTACTCTTGCTTTAATACCAAAAATTGATAATTTTTTAGATTCACAAATGTGTTGATAGCGGAGGAAAGGTGCTCATCCCTGCATTTGCTCTTGGAAGAGCTCAGGTTTTTATTCTTTATTTTGGCTACTTTATAAATCAAGTCTATTTTTTTTTTCCTTTTTTCTTTTTGATAACTGTGGTGTCTGGGCTAGCTTGTGCGTATCTCAACTAATTCTACTGGATACTTATCAATAGGGGTGGGTGTTCGGTTCTTCAGTTCAATTTTATCAAACTTTGATTCGGTTGTTTGGTTATGGAAACATGTGCAACAAACACCGAACCAATTTAGTTCAGTTTTTCAAAGTTTGTTCAATTTGGTCTTCTGAAACGTTTTCTCGACGCAAATGAGAAACAAAATAAGGACCAAACCAGAATAAATCTAACGTTAATACTATAATTATACCAATATATGGTACTAAATTACTAATTAGACCAAAATT</genome_strand>
        <mrna_strand>ATTCGTTTTTATTTACTCTTGCTTT-ATACCAAAAATTGATAATTTTTTAGATTCACAAATGTGTTGATAGCGGAGGAAAGGTGCTCATCCCTGCATTTGCTCTTGGAAGAGCTCAGGTTTTTATTCTTTATTTTGGCTACTTTATAAATCAAGTCTATTTTTTTTTTCCTTTTTTCTTTTTGATAACTGTGGTGTCTGGGCTAGCTTGTGCGTATCTCAACTAATTCTACTGGATACTTATCAATAGGGGTGGGTGTTCGGGTCTTCAGTTCAATTTTATCAAACTTTGATTCGGTTGTTTGGTTATGGAAACATGTGCAACAAACACCGAACCAATTTAGTTCAGTTTTTCAAAGTTTGTTCAATTTGGTCTTCTGAAACGTTTTCTCGACGCATATGAGAAACAAAATAAGGACCAAACCAGAATAAATCTAACGTTAATACTATAATTATACCAATATATGGTACTAAATTACTAATTAGACCAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M147-R" ref_strand="+" ref_description="SGN-M147-R TG15-R [rflp_markers_reverse]">
      <seq>ttttatttactcttgctttaataccaaaaattgataattttttagattcacaaatgtgttgatagcggaggaaaggtgctcatccctgcatttgctcttggaagagctcaggtttttattctttattttggctactttataaatcaagtctattttttttttccttttttctttttgataactgtggtgtctgggctagcttgtgcgtatctcaactaattctactggatacttatcaataggggtgggtgttcggttcttcagttcaattttatcaaactttgattcggttgtttggttatggaaacatgtgcaacaaacaccgaaccaatttagttcagtttttcaaagtttgttcaatttggtcttctgaaacgttttctcgacgcaaatgagaaacaaaataaggaccaaaccagaataaatctaacgttaatactataattataccaatatatggtactaaattactaattagacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="15048" stop="16128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15348" g_stop="15828" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-M147-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M147-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15348" e_stop="15828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTTACTCTTGCTTTAATACCAAAAATTGATAATTTTTTAGATTCACAAATGTGTTGATAGCGGAGGAAAGGTGCTCATCCCTGCATTTGCTCTTGGAAGAGCTCAGGTTTTTATTCTTTATTTTGGCTACTTTATAAATCAAGTCTATTTTTTTTTTCCTTTTTTCTTTTTGATAACTGTGGTGTCTGGGCTAGCTTGTGCGTATCTCAACTAATTCTACTGGATACTTATCAATAGGGGTGGGTGTTCGGTTCTTCAGTTCAATTTTATCAAACTTTGATTCGGTTGTTTGGTTATGGAAACATGTGCAACAAACACCGAACCAATTTAGTTCAGTTTTTCAAAGTTTGTTCAATTTGGTCTTCTGAAACGTTTTCTCGACGCAAATGAGAAACAAAATAAGGACCAAACCAGAATAAATCTAACGTTAATACTATAATTATACCAATATATGGTACTAAATTACTAATTAGACC</genome_strand>
        <mrna_strand>TTTTATTTACTCTTGCTTTAATACCAAAAATTGATAATTTTTTAGATTCACAAATGTGTTGATAGCGGAGGAAAGGTGCTCATCCCTGCATTTGCTCTTGGAAGAGCTCAGGTTTTTATTCTTTATTTTGGCTACTTTATAAATCAAGTCTATTTTTTTTTTCCTTTTTTCTTTTTGATAACTGTGGTGTCTGGGCTAGCTTGTGCGTATCTCAACTAATTCTACTGGATACTTATCAATAGGGGTGGGTGTTCGGTTCTTCAGTTCAATTTTATCAAACTTTGATTCGGTTGTTTGGTTATGGAAACATGTGCAACAAACACCGAACCAATTTAGTTCAGTTTTTCAAAGTTTGTTCAATTTGGTCTTCTGAAACGTTTTCTCGACGCAAATGAGAAACAAAATAAGGACCAAACCAGAATAAATCTAACGTTAATACTATAATTATACCAATATATGGTACTAAATTACTAATTAGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M387-R" ref_strand="+" ref_description="SGN-M387-R TG49-R [rflp_markers_reverse]">
      <seq>ttttatttactcttgctttataccaaaaattgataattttttagattcacaaatgtgttgatagcggaggaaaggtgctcatccctgcatttgctcttggaagagctcaggtttttattctttattttggctactttataaatcaagtctattttttttttccttttttctttttgataactgtggtgtctgggctagcttgtgcgtatctcaactaattctactggatacttatcaataggggtgggtgttcggttcttcagttcaattttatcaaactttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="+" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="15048" stop="15932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15348" g_stop="15632" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="+" ref_id="SGN-M387-R" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M387-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15348" e_stop="15632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTTACTCTTGCTTTAATACCAAAAATTGATAATTTTTTAGATTCACAAATGTGTTGATAGCGGAGGAAAGGTGCTCATCCCTGCATTTGCTCTTGGAAGAGCTCAGGTTTTTATTCTTTATTTTGGCTACTTTATAAATCAAGTCTATTTTTTTTTTCCTTTTTTCTTTTTGATAACTGTGGTGTCTGGGCTAGCTTGTGCGTATCTCAACTAATTCTACTGGATACTTATCAATAGGGGTGGGTGTTCGGTTCTTCAGTTCAATTTTATCAAACTTTGA</genome_strand>
        <mrna_strand>TTTTATTTACTCTTGCTTT-ATACCAAAAATTGATAATTTTTTAGATTCACAAATGTGTTGATAGCGGAGGAAAGGTGCTCATCCCTGCATTTGCTCTTGGAAGAGCTCAGGTTTTTATTCTTTATTTTGGCTACTTTATAAATCAAGTCTATTTTTTTTTTCCTTTTTTCTTTTTGATAACTGTGGTGTCTGGGCTAGCTTGTGCGTATCTCAACTAATTCTACTGGATACTTATCAATAGGGGTGGGTGTTCGGTTCTTCAGTTCAATTTTATCAAACTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M147-F" ref_strand="+" ref_description="SGN-M147-F TG15-F [rflp_markers_forward]">
      <seq>atctcaacaaagaaatatcacataactgcaatgaccaaagatatcatgcaaggaaatcaagggagaagaacctgcggaaaaataaataggaactttaagattcatccgctcccaatagtcatccaataacatacagagttcctgtttggagaagtatagttcaccaataaaacaaatatttgtgttataatatcttacagtacagaagaaaagaaaatcgtaagaagcagcacgaacataaagaaaaacatcaaaaataagattgaggaaagcccatgtttatcagttatataattcggcaacttataccacacatgtatagatcataagcagtgataagtgtgagatatagagaacctctagacttagaaaactcataattttccttatttatttaatattagagtgaaactagtgcagatagagtgaaatagatatagagattcatactcactgaccacaagtttggaatcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078J04-gFtiY/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0078J04.1" temp_strand="-" temp_description="C04HBa0078J04.1  CU222539.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0078J04 sequenced_by:sanger upload_account_name:uk">
        <position start="17829" stop="16754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17529" g_stop="17054" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078J04.1" gen_strand="-" ref_id="SGN-M147-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078J04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M147-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17529" e_stop="17054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCAACAAAGAAATATCACATAACTGCAATGACCAAAGATATCATGCAAGGAAATCAAGGGAGAAGAACCTGCGGAAAAATAAATAGGAACTTTAAGATTCATCCGCTCCCAATAGTCATCCAATAACATACAGAGTTCCTGTTTGGAGAAGTATAGTTCACCAATAAAACAAATATTTGTGTTATAATATCTTACAGTACAGAAGAAAAGAAAATCGTAAGAAGCAGCACGAACATAAAGAAAAACATCAAAAATAAGATTGAGGAAAGCCCATGTTTATCAGTTATATAATTCGGCAACTTATACCACACATGTATAGATCATAAGCAGTGATAAGTGTGAGATATAGAGAACCTCTAGACTTAGAAAACTCATAATTTTCCTTATTTATTTAATATTAGAGTGAAACTAGTGCAGATAGAGTGAAATAGATATAGAGATTCATACTCACTGACCACAAGTTTGGAATCGAG</genome_strand>
        <mrna_strand>ATCTCAACAAAGAAATATCACATAACTGCAATGACCAAAGATATCATGCAAGGAAATCAAGGGAGAAGAACCTGCGGAAAAATAAATAGGAACTTTAAGATTCATCCGCTCCCAATAGTCATCCAATAACATACAGAGTTCCTGTTTGGAGAAGTATAGTTCACCAATAAAACAAATATTTGTGTTATAATATCTTACAGTACAGAAGAAAAGAAAATCGTAAGAAGCAGCACGAACATAAAGAAAAACATCAAAAATAAGATTGAGGAAAGCCCATGTTTATCAGTTATATAATTCGGCAACTTATACCACACATGTATAGATCATAAGCAGTGATAAGTGTGAGATATAGAGAACCTCTAGACTTAGAAAACTCATAATTTTCCTTATTTATTTAATATTAGAGTGAAACTAGTGCAGATAGAGTGAAATAGATATAGAGATTCATACTCACTGACCACAAGTTTGGAATCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="15342" PGL_stop="15834"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15342" e_stop="15834"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15342" e_stop="15834" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15342" stop="15834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M387-F" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15348" stop="15828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M147-R" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15348" stop="15632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M387-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCGTTTTTATTTACTCTTGCTTTAATACCAAAAATTGATAATTTTTTAGATTCACAAATGTGTTGATAGCGGAGGAAAGGTGCTCATCCCTGCATTTGCTCTTGGAAGAGCTCAGGTTTTTATTCTTTATTTTGGCTACTTTATAAATCAAGTCTATTTTTTTTTTCCTTTTTTCTTTTTGATAACTGTGGTGTCTGGGCTAGCTTGTGCGTATCTCAACTAATTCTACTGGATACTTATCAATAGGGGTGGGTGTTCGGTTCTTCAGTTCAATTTTATCAAACTTTGATTCGGTTGTTTGGTTATGGAAACATGTGCAACAAACACCGAACCAATTTAGTTCAGTTTTTCAAAGTTTGTTCAATTTGGTCTTCTGAAACGTTTTCTCGACGCAAATGAGAAACAAAATAAGGACCAAACCAGAATAAATCTAACGTTAATACTATAATTATACCAATATATGGTACTAAATTACTAATTAGACCAAAATT</gDNA_template>
            <first_frame> I  R  F  Y  L  L  L  L  *  Y  Q  K  L  I  I  F  *  I  H  K  C  V  D  S  G  G  K  V  L  I  P  A  F  A  L  G  R  A  Q  V  F  I  L  Y  F  G  Y  F  I  N  Q  V  Y  F  F  F  P  F  F  F  L  I  T  V  V  S  G  L  A  C  A  Y  L  N  *  F  Y  W  I  L  I  N  R  G  G  C  S  V  L  Q  F  N  F  I  K  L  *  F  G  C  L  V  M  E  T  C  A  T  N  T  E  P  I  *  F  S  F  S  K  F  V  Q  F  G  L  L  K  R  F  L  D  A  N  E  K  Q  N  K  D  Q  T  R  I  N  L  T  L  I  L  *  L  Y  Q  Y  M  V  L  N  Y  *  L  D  Q  N  </first_frame>
            <second_frame>  F  V  F  I  Y  S  C  F  N  T  K  N  *  *  F  F  R  F  T  N  V  L  I  A  E  E  R  C  S  S  L  H  L  L  L  E  E  L  R  F  L  F  F  I  L  A  T  L  *  I  K  S  I  F  F  F  L  F  S  F  *  *  L  W  C  L  G  *  L  V  R  I  S  T  N  S  T  G  Y  L  S  I  G  V  G  V  R  F  F  S  S  I  L  S  N  F  D  S  V  V  W  L  W  K  H  V  Q  Q  T  P  N  Q  F  S  S  V  F  Q  S  L  F  N  L  V  F  *  N  V  F  S  T  Q  M  R  N  K  I  R  T  K  P  E  *  I  *  R  *  Y  Y  N  Y  T  N  I  W  Y  *  I  T  N  *  T  K  I </second_frame>
            <third_frame>   S  F  L  F  T  L  A  L  I  P  K  I  D  N  F  L  D  S  Q  M  C  *  *  R  R  K  G  A  H  P  C  I  C  S  W  K  S  S  G  F  Y  S  L  F  W  L  L  Y  K  S  S  L  F  F  F  S  F  F  L  F  D  N  C  G  V  W  A  S  L  C  V  S  Q  L  I  L  L  D  T  Y  Q  *  G  W  V  F  G  S  S  V  Q  F  Y  Q  T  L  I  R  L  F  G  Y  G  N  M  C  N  K  H  R  T  N  L  V  Q  F  F  K  V  C  S  I  W  S  S  E  T  F  S  R  R  K  *  E  T  K  *  G  P  N  Q  N  K  S  N  V  N  T  I  I  I  P  I  Y  G  T  K  L  L  I  R  P  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0078J04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="17529" PGL_stop="17054"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17529" e_stop="17054"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17529" e_stop="17054" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17529" stop="17054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M147-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTCAACAAAGAAATATCACATAACTGCAATGACCAAAGATATCATGCAAGGAAATCAAGGGAGAAGAACCTGCGGAAAAATAAATAGGAACTTTAAGATTCATCCGCTCCCAATAGTCATCCAATAACATACAGAGTTCCTGTTTGGAGAAGTATAGTTCACCAATAAAACAAATATTTGTGTTATAATATCTTACAGTACAGAAGAAAAGAAAATCGTAAGAAGCAGCACGAACATAAAGAAAAACATCAAAAATAAGATTGAGGAAAGCCCATGTTTATCAGTTATATAATTCGGCAACTTATACCACACATGTATAGATCATAAGCAGTGATAAGTGTGAGATATAGAGAACCTCTAGACTTAGAAAACTCATAATTTTCCTTATTTATTTAATATTAGAGTGAAACTAGTGCAGATAGAGTGAAATAGATATAGAGATTCATACTCACTGACCACAAGTTTGGAATCGAG</gDNA_template>
            <first_frame> I  S  T  K  K  Y  H  I  T  A  M  T  K  D  I  M  Q  G  N  Q  G  R  R  T  C  G  K  I  N  R  N  F  K  I  H  P  L  P  I  V  I  Q  *  H  T  E  F  L  F  G  E  V  *  F  T  N  K  T  N  I  C  V  I  I  S  Y  S  T  E  E  K  K  I  V  R  S  S  T  N  I  K  K  N  I  K  N  K  I  E  E  S  P  C  L  S  V  I  *  F  G  N  L  Y  H  T  C  I  D  H  K  Q  *  *  V  *  D  I  E  N  L  *  T  *  K  T  H  N  F  P  Y  L  F  N  I  R  V  K  L  V  Q  I  E  *  N  R  Y  R  D  S  Y  S  L  T  T  S  L  E  S   </first_frame>
            <second_frame>  S  Q  Q  R  N  I  T  *  L  Q  *  P  K  I  S  C  K  E  I  K  G  E  E  P  A  E  K  *  I  G  T  L  R  F  I  R  S  Q  *  S  S  N  N  I  Q  S  S  C  L  E  K  Y  S  S  P  I  K  Q  I  F  V  L  *  Y  L  T  V  Q  K  K  R  K  S  *  E  A  A  R  T  *  R  K  T  S  K  I  R  L  R  K  A  H  V  Y  Q  L  Y  N  S  A  T  Y  T  T  H  V  *  I  I  S  S  D  K  C  E  I  *  R  T  S  R  L  R  K  L  I  I  F  L  I  Y  L  I  L  E  *  N  *  C  R  *  S  E  I  D  I  E  I  H  T  H  *  P  Q  V  W  N  R  </second_frame>
            <third_frame>   L  N  K  E  I  S  H  N  C  N  D  Q  R  Y  H  A  R  K  S  R  E  K  N  L  R  K  N  K  *  E  L  *  D  S  S  A  P  N  S  H  P  I  T  Y  R  V  P  V  W  R  S  I  V  H  Q  *  N  K  Y  L  C  Y  N  I  L  Q  Y  R  R  K  E  N  R  K  K  Q  H  E  H  K  E  K  H  Q  K  *  D  *  G  K  P  M  F  I  S  Y  I  I  R  Q  L  I  P  H  M  Y  R  S  *  A  V  I  S  V  R  Y  R  E  P  L  D  L  E  N  S  *  F  S  L  F  I  *  Y  *  S  E  T  S  A  D  R  V  K  *  I  *  R  F  I  L  T  D  H  K  F  G  I  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0078J04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 5 chains have been computed
$ 
$ memory statistics:
$ 8160 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2040 bytes was the average size of a spliced alignment
$ 6704 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3352 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 6 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 17:20:49
-->
