<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:24:19"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444619" ref_strand="+" ref_description="SGN-E444619 [cSTA-43-J15]">
      <seq>ttgctccttcacaacatccccttctggtggaaccctcttccttgctgcagttgggtcagccacgtcaatcagagagtatccgtgatgcttattccgataggagctcagaaggaacctcatcgcgcttggattctgttttccgttctctccggagcagtcgtcatggccaacggttcaatttttggaccaatgataaccaacaaagcggtggatcaggtgcctctgctcttccacagggttttgaggatttgcttgtttcccacttgaggcggcctagccctgaaaaatcagctgatcaagatgctacagaagggtctcagaatagaggtgaggccacccagtttgttggatcaggtgaaatggcagctgaaagtgctatggagaacaataacatcaatgaagccagagatgcctctaccccctcaacagtgttggatgaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="32032" stop="33151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32332" g_stop="32403" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32404" i_stop="32479" i_length="76">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32480" g_stop="32851" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="444" r_length="372" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E444619" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32332" e_stop="32403"/>
          <exon e_start="32480" e_stop="32851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCCTTCACAACATCCCCTTCTGGTCGAACCCTCTTCCTTGCTGCAATTGGGTCAGCCACGTCAATCAGGTATCTGTAGTACTTCTGGTTGATATCGTAATTTTTATCTAATGTGAAATCTCATTGCTTTCTTCGTTTTTGTCAGAGAGTATCCGTGATGCTTATTCCGATAGGAGCTCAGAAGGAACCTCATCGCGCTTGGATTCCGTTTTCCGTTCTCTCCGGAGCAGTCGTCATGGCCAACGGTTCAATTTTTGGACCAATGATAACCAACAAAGCGGTGGATCAGGTGCCTCTGCTCTTCCACAGGGTTTTGAGGATTTGCTTGTTTCCCACTTGAGGCGGCCTAGCCCCGAGAAATCAGCTGATCAAGATGCTATAGAAGGGTCTCAGAATAGAGGTGAGGCCACCCAGTTCGCTGGATCAGGTGAAATGGCAGCTGAAAGTGCTATGGAGAACAATAACAACAATGAAGCCAGAGATGCCTCTACCCCCTCAACAGTGTTGGATGAATCTG</genome_strand>
        <mrna_strand>TTGCTCCTTCACAACATCCCCTTCTGGTGGAACCCTCTTCCTTGCTGCAGTTGGGTCAGCCACGTCAATCAG............................................................................AGAGTATCCGTGATGCTTATTCCGATAGGAGCTCAGAAGGAACCTCATCGCGCTTGGATTCTGTTTTCCGTTCTCTCCGGAGCAGTCGTCATGGCCAACGGTTCAATTTTTGGACCAATGATAACCAACAAAGCGGTGGATCAGGTGCCTCTGCTCTTCCACAGGGTTTTGAGGATTTGCTTGTTTCCCACTTGAGGCGGCCTAGCCCTGAAAAATCAGCTGATCAAGATGCTACAGAAGGGTCTCAGAATAGAGGTGAGGCCACCCAGTTTGTTGGATCAGGTGAAATGGCAGCTGAAAGTGCTATGGAGAACAATAACATCAATGAAGCCAGAGATGCCTCTACCCCCTCAACAGTGTTGGATGAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736921" ref_strand="+" ref_description="SGN-E736921 [LC07DC04]">
      <seq>ccgtgtaagtggtgcaactctacgtgaaagtcttcgaagatcttgatgttgaaattggaagtgctgatgggcatgatgatggtgaagataggcaaggttcatcagatgctagaactagagaggactaacgtatcgtttggaaattctactcaagtaagtgcgagagatgttgcccttcacagtgtatctgaagcttcagaacatccaaatcaagaagcagaacaaggtggacccaatgatgaacagcaacgtaatgtagatgctgattctggatcaattgatcctgcatttcttgaggcgcttcctgatgagttgcgagccgaggttctctcagctcaacagggtcaagcaactctaccaccaaattctgagcctcaaaatggtggagatattgatccagaatttctggcagcccttccgtctgacatcagagaagaagtgttggcacagcaaagggcacagcggctgcagcactcgcaagaattagaaggccagcctgttgagatggacactgtgtcaattattgctacattcccttcagaactacgggaagaggtccttctgacatcttctgatgccattcttgctaatttaacacctgctcttgtggcggaagcaaatatgttgcgtgagagatttgcacgtaggtataaccgaacactttttggtatgtatcctagaaaccgtagaggcgactctaggcgggatgaacaattggacagggctggtggaaccctttcgcgtagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="32691" stop="34209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32991" g_stop="33543" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33544" i_stop="33715" i_length="172">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33716" g_stop="33909" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="749" r_length="194" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E736921" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32991" e_stop="33543"/>
          <exon e_start="33716" e_stop="33909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGGAAGTGGTGCAACTCTAGGTGAAAGTCTTCGAAG-TCTTGATGTTGAAATTGGAAGTGCTGATGGGCATGATGATGGTGGAGATAGGCAAGGTTCAGCAGATGCTAGAACTAG-GAGGACTAACGTATCGTTTGGAAATTCTACTCAGGTAAGTGCGAGAGATGTTGCCCTTCACAGTGTATCTGAAGCTTCAGAACATCCAAATCAAGAAGCAGAACAAGGTGGACCCAATGATGAACAGCAACGTAATGTAGATGCTGATTCTGGATCAATTGATCCTGCATTTCTTGAGGCGCTTCCTGAGGAGTTGCGAGCCGAGGTTCTCTCAGCTCAACAGGGTCAAGCAACTCAACCACCAAATTCTGAGCCTCAAAATGGTGGAGATATTGATCCAGAATTTCTGGCAGCCCTTCCGTCTGACATCAGAGAAGAAGTGTTGGCACAGCAAAGGGCACAGCGGCTGCAGCAGTCACAAGAATTAGAAGGCCAGCCTGTTGAGATGGACACTGTGTCAATTATTGCTACATTCCCTTCAGAACTACGGGAAGAGGTACTTCTTTAGATGATTAGGTGTAATCAATTTGAATTTTTATTTCATTTACTCTATTACAAGTAGCGACCTTGTTTTCCTTTTTCGTTTTGTTTTTTCATGTTTGATTTTTGAGCTTGGTTTTCTTGAATCCTTCTATGGCTATTATTGGATCTGATGTTTTATCTCGCAGGTCCTTCTGACATCTTCTGATGCCATTCTTGCTAATTTAACACCTGCTCTTGTGGCGGAAGCAAATATGTTGCGTGAGAGATTTGCACGTAGGTATAACCGAACACTTTTTGGTATGTATCCTAGAAACCGTAGAGGCGACTCTAGGCGGAATGAACAATTGGACAGGGCTGGTGGAACCCTTTCACGTAGATC</genome_strand>
        <mrna_strand>CCGTGTAAGTGGTGCAACTCTACGTGAAAGTCTTCGAAGATCTTGATGTTGAAATTGGAAGTGCTGATGGGCATGATGATGGTGAAGATAGGCAAGGTTCATCAGATGCTAGAACTAGAGAGGACTAACGTATCGTTTGGAAATTCTACTCAAGTAAGTGCGAGAGATGTTGCCCTTCACAGTGTATCTGAAGCTTCAGAACATCCAAATCAAGAAGCAGAACAAGGTGGACCCAATGATGAACAGCAACGTAATGTAGATGCTGATTCTGGATCAATTGATCCTGCATTTCTTGAGGCGCTTCCTGATGAGTTGCGAGCCGAGGTTCTCTCAGCTCAACAGGGTCAAGCAACTCTACCACCAAATTCTGAGCCTCAAAATGGTGGAGATATTGATCCAGAATTTCTGGCAGCCCTTCCGTCTGACATCAGAGAAGAAGTGTTGGCACAGCAAAGGGCACAGCGGCTGCAGCACTCGCAAGAATTAGAAGGCCAGCCTGTTGAGATGGACACTGTGTCAATTATTGCTACATTCCCTTCAGAACTACGGGAAGAG............................................................................................................................................................................GTCCTTCTGACATCTTCTGATGCCATTCTTGCTAATTTAACACCTGCTCTTGTGGCGGAAGCAAATATGTTGCGTGAGAGATTTGCACGTAGGTATAACCGAACACTTTTTGGTATGTATCCTAGAAACCGTAGAGGCGACTCTAGGCGGGATGAACAATTGGACAGGGCTGGTGGAACCCTTTCGCGTAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324206" ref_strand="+" ref_description="SGN-E324206 [cTOC-4-L22]">
      <seq>gatgctgattctggatcaattgatcctgcatttcttgaggcgcttcctgaggagttgcgagccgaggttctctcagctcaacagggtcaagcaactcaaccaccaaattctgagcctcaaaatggtggagatattgatccagaatttctggcagcccttccgtctgacatcagagaagaagtgttggcacagcaaagggcacagcggctgcagcagtcacaagaattagaaggccagcctgttgagatggacactgtgtcaattattgctacattcccttcagaactacgggaagaggtccttctgacatcttctgatgccattcttgctaatttaacacctgctcttgtggcggaagcaaatatgttgcgtgagagatttgcacgtaggtataaccgaacactttttggtatgtatcctagaaaccgtagaggcgactctaggcggaatgaacaattggacagggctggtggaaccctttcacgtagatcagccggaagtaagcctctggaggctgatgggtctcccttagttgacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="32947" stop="34258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33247" g_stop="33543" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33544" i_stop="33715" i_length="172">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33716" g_stop="33958" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="540" r_length="243" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E324206" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33247" e_stop="33543"/>
          <exon e_start="33716" e_stop="33958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCTGATTCTGGATCAATTGATCCTGCATTTCTTGAGGCGCTTCCTGAGGAGTTGCGAGCCGAGGTTCTCTCAGCTCAACAGGGTCAAGCAACTCAACCACCAAATTCTGAGCCTCAAAATGGTGGAGATATTGATCCAGAATTTCTGGCAGCCCTTCCGTCTGACATCAGAGAAGAAGTGTTGGCACAGCAAAGGGCACAGCGGCTGCAGCAGTCACAAGAATTAGAAGGCCAGCCTGTTGAGATGGACACTGTGTCAATTATTGCTACATTCCCTTCAGAACTACGGGAAGAGGTACTTCTTTAGATGATTAGGTGTAATCAATTTGAATTTTTATTTCATTTACTCTATTACAAGTAGCGACCTTGTTTTCCTTTTTCGTTTTGTTTTTTCATGTTTGATTTTTGAGCTTGGTTTTCTTGAATCCTTCTATGGCTATTATTGGATCTGATGTTTTATCTCGCAGGTCCTTCTGACATCTTCTGATGCCATTCTTGCTAATTTAACACCTGCTCTTGTGGCGGAAGCAAATATGTTGCGTGAGAGATTTGCACGTAGGTATAACCGAACACTTTTTGGTATGTATCCTAGAAACCGTAGAGGCGACTCTAGGCGGAATGAACAATTGGACAGGGCTGGTGGAACCCTTTCACGTAGATCAGCCGGAAGTAAGCCTCTGGAGGCTGATGGGTCTCCCTTAGTTGACACT</genome_strand>
        <mrna_strand>GATGCTGATTCTGGATCAATTGATCCTGCATTTCTTGAGGCGCTTCCTGAGGAGTTGCGAGCCGAGGTTCTCTCAGCTCAACAGGGTCAAGCAACTCAACCACCAAATTCTGAGCCTCAAAATGGTGGAGATATTGATCCAGAATTTCTGGCAGCCCTTCCGTCTGACATCAGAGAAGAAGTGTTGGCACAGCAAAGGGCACAGCGGCTGCAGCAGTCACAAGAATTAGAAGGCCAGCCTGTTGAGATGGACACTGTGTCAATTATTGCTACATTCCCTTCAGAACTACGGGAAGAG............................................................................................................................................................................GTCCTTCTGACATCTTCTGATGCCATTCTTGCTAATTTAACACCTGCTCTTGTGGCGGAAGCAAATATGTTGCGTGAGAGATTTGCACGTAGGTATAACCGAACACTTTTTGGTATGTATCCTAGAAACCGTAGAGGCGACTCTAGGCGGAATGAACAATTGGACAGGGCTGGTGGAACCCTTTCACGTAGATCAGCCGGAAGTAAGCCTCTGGAGGCTGATGGGTCTCCCTTAGTTGACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738097" ref_strand="+" ref_description="SGN-E738097 [LC12BE02]">
      <seq>gctcagcaaagggcacagcggctgcagcagtcacaagaattagaaggccagcctgttgagatggacactgtgtcaattattgctacattcccttcagaactacgggaagaggtccttctgacatcttctgatgccattcttgctaatttaacacctgctcttgtggcggaagcaaatatgttgcgtgagagatttgcacgtaggtataaccgaacactttttggtatgtatcctagaaaccgtagaggcgactctaggcggaatgaacaattggacagggctggtggaaccctttcgcgtagatcagccggaagtaagcctctggaggctgatgggtctcccttagttgacactgagggtttaagagctttggtgaggttgctgcgcgtattccagccaatatacaaagttcctctacagaggctgatgttgaatctcagtgcacatgctgaaacaagaactgctttagtgaaaatatttatggacttgttgatgcttgatgtcggacagcctgctactgatctgaatacagctgaacccccatatcgactatatggttgccaaagtaatgtgatgtattcacgtcctcaacatcttgatggaattcctccattactatctcgtcgtgttcttgagacacttacatacttggcaaagaaccattctttagttgcaaagactctacttgaattcaggctccctcgaccagtgctggaagggccaatagttccggatcagaggcggggaaaagctgttatggttgaggctgatggaccagatagatggcagcttgaaggacaagtatctctggcattgcttttgggcctcttgaaccatcccctttatttgagaagtgttgcacatcctgagcagctgttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="33133" stop="34976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33433" g_stop="33543" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33544" i_stop="33715" i_length="172">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33716" g_stop="34000" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="396" r_length="285" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34001" i_stop="34078" i_length="78">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34079" g_stop="34283" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="601" r_length="205" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34284" i_stop="34398" i_length="115">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34399" g_stop="34670" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="873" r_length="272" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34671" i_stop="34756" i_length="86">
            <donor d_prob="0.818" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34757" g_stop="34764" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="881" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E738097" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33433" e_stop="33543"/>
          <exon e_start="33716" e_stop="34000"/>
          <exon e_start="34079" e_stop="34283"/>
          <exon e_start="34399" e_stop="34670"/>
          <exon e_start="34757" e_stop="34764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAGCAAAGGGCACAGCGGCTGCAGCAGTCACAAGAATTAGAAGGCCAGCCTGTTGAGATGGACACTGTGTCAATTATTGCTACATTCCCTTCAGAACTACGGGAAGAGGTACTTCTTTAGATGATTAGGTGTAATCAATTTGAATTTTTATTTCATTTACTCTATTACAAGTAGCGACCTTGTTTTCCTTTTTCGTTTTGTTTTTTCATGTTTGATTTTTGAGCTTGGTTTTCTTGAATCCTTCTATGGCTATTATTGGATCTGATGTTTTATCTCGCAGGTCCTTCTGACATCTTCTGATGCCATTCTTGCTAATTTAACACCTGCTCTTGTGGCGGAAGCAAATATGTTGCGTGAGAGATTTGCACGTAGGTATAACCGAACACTTTTTGGTATGTATCCTAGAAACCGTAGAGGCGACTCTAGGCGGAATGAACAATTGGACAGGGCTGGTGGAACCCTTTCACGTAGATCAGCCGGAAGTAAGCCTCTGGAGGCTGATGGGTCTCCCTTAGTTGACACTGAGGGTTTAAGAGCTTTGGTGAGGTTGCTCCGCGTATTCCAGGTATTAACTTTGTGAGGTTGAATTACTGTTTTTCTTGCTGCTATGATTTGAACATTGACACGTCTGGTTCTTTTGCAGCCAATATACAAAGTTCCTCTACAGAGGCTGATGTTGAATCTCAGTGCACATGCTGAAACAAGAACTGCTTTAGTGAAAATATTTATGGACTTGTTGATGCTTGATGTCGGACAGCCTGCTACTGATCTGAATACTGCTGAACCCCCATATCGACTATATGGTTGCCAAAGTAATGTGATGTATTCACGTCCTCAACATCTTGATGGTGAGACCTTATCATCTTGCTTAGCTTTTTATCATGTATCACATCTATTGTTACTACTGTTATATTTGTGATTTTTTTTGCCTTGGGTAAATTTTATTGATCTAATGGCTTGTAGGAATTCCTCCATTACTATCTCGTCGTGTTCTTGAGACACTTACATACCTGGCAAAGAACCATTCTTTAGTTGCAAAGACTCTACTTGAATTCAGGCTCCCTCGACCAGTGCTGGAAGGGCCAATAGTTCCGGATCAGAGGCGGGGAAAAGCTGTTATGGTTGAGGCTGATGGACCAGATAGATGGCAGCTTGAAGGACAAGTATCTCTGGCATTGCTTTTGGGCCTCTTGAACCATCCCCTTTATTTGAGAAGTGTTGCACATCTTGAGCAGGTAGTTTGCACAAGTAGGATGTCTCTTTGAGTAGTCATTATCTAGTGTTTCTTGCTGTTCTCAACTATTTTCCTTTTGGTATCTAGCTGTTAAA</genome_strand>
        <mrna_strand>GCTCAGCAAAGGGCACAGCGGCTGCAGCAGTCACAAGAATTAGAAGGCCAGCCTGTTGAGATGGACACTGTGTCAATTATTGCTACATTCCCTTCAGAACTACGGGAAGAG............................................................................................................................................................................GTCCTTCTGACATCTTCTGATGCCATTCTTGCTAATTTAACACCTGCTCTTGTGGCGGAAGCAAATATGTTGCGTGAGAGATTTGCACGTAGGTATAACCGAACACTTTTTGGTATGTATCCTAGAAACCGTAGAGGCGACTCTAGGCGGAATGAACAATTGGACAGGGCTGGTGGAACCCTTTCGCGTAGATCAGCCGGAAGTAAGCCTCTGGAGGCTGATGGGTCTCCCTTAGTTGACACTGAGGGTTTAAGAGCTTTGGTGAGGTTGCTGCGCGTATTCCAG..............................................................................CCAATATACAAAGTTCCTCTACAGAGGCTGATGTTGAATCTCAGTGCACATGCTGAAACAAGAACTGCTTTAGTGAAAATATTTATGGACTTGTTGATGCTTGATGTCGGACAGCCTGCTACTGATCTGAATACAGCTGAACCCCCATATCGACTATATGGTTGCCAAAGTAATGTGATGTATTCACGTCCTCAACATCTTGATG...................................................................................................................GAATTCCTCCATTACTATCTCGTCGTGTTCTTGAGACACTTACATACTTGGCAAAGAACCATTCTTTAGTTGCAAAGACTCTACTTGAATTCAGGCTCCCTCGACCAGTGCTGGAAGGGCCAATAGTTCCGGATCAGAGGCGGGGAAAAGCTGTTATGGTTGAGGCTGATGGACCAGATAGATGGCAGCTTGAAGGACAAGTATCTCTGGCATTGCTTTTGGGCCTCTTGAACCATCCCCTTTATTTGAGAAGTGTTGCACATCCTGAGCAG......................................................................................CTGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453892" ref_strand="+" ref_description="SGN-E453892 [cSTS-21-B15]">
      <seq>gttcttgagacacttacatacttggcaaagaaccattctttagttgcaaagactctacttgaattcaggctccctcgaccagtgctggaagggccaatagttccagatcagaggcggggaaaagctgttatggttgaggctgatggaccagatagatggcagcttgaaggacaagtatctcttgcattgcttttgggcctcttgaatcatcccctttatttgagaagtgttgcacatctagagcagctgttaaatctgctagatgttgtagtccaaaacacagaaagcaaatcaaatgtgcatgaagaacctggcacatcctctacagagcaactgactggtcctccaatccaatctgctgcagaaatgaatactgaatctcatgcagcttcatctgaggttgaggacaaatctggagcatcgtcctctgttgcaagcagagaccaaagtactgaaagtattctactcagtctaccacaattagagcttcgacgcctgtgctcattgcttgccagagaaggtctttcagacaatgcttactctttggtagctgaggtactgaaaaagttggtggccatagctcctgccatttgtcatttatttattactgagcttgctggctctgtgcaaagtctgaccagatctgcgatggatgagttaaacaagtttagggaagtggaaaaagcactgctcagtaccacttcaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="34125" stop="35961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34425" g_stop="34670" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34671" i_stop="34756" i_length="86">
            <donor d_prob="0.818" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34757" g_stop="35031" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="521" r_length="275" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35032" i_stop="35471" i_length="440">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35472" g_stop="35661" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="711" r_length="190" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E453892" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34425" e_stop="34670"/>
          <exon e_start="34757" e_stop="35031"/>
          <exon e_start="35472" e_stop="35661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTGAGACACTTACATACCTGGCAAAGAACCATTCTTTAGTTGCAAAGACTCTACTTGAATTCAGGCTCCCTCGACCAGTGCTGGAAGGGCCAATAGTTCCGGATCAGAGGCGGGGAAAAGCTGTTATGGTTGAGGCTGATGGACCAGATAGATGGCAGCTTGAAGGACAAGTATCTCTGGCATTGCTTTTGGGCCTCTTGAACCATCCCCTTTATTTGAGAAGTGTTGCACATCTTGAGCAGGTAGTTTGCACAAGTAGGATGTCTCTTTGAGTAGTCATTATCTAGTGTTTCTTGCTGTTCTCAACTATTTTCCTTTTGGTATCTAGCTGTTAAATCTGCTAGATGTTGTAGTCCAAAACACAGAAAGCAAATCAAATGCGCGTGAAGAACCTGGCACATCCTCTACAGAGCAACTGCCTGGTCCTCCAGTCCAATCTGCTGCTGAAATGAATACTGAATCTCATGCAGCTTCATCTGAGGTTGAGGACAAATCTGGAGCATCGTCCTCTATCACAGGCAGAGACCAAAGTACTGAAAGTATTCTACTCAGTCTACCACAATTAGAACTTCGACGTCTGTGCTCATTGCTTGCCAGAGAAGGGTAAGCTAGTTCCTAATCCTGTGATGTGTATTTGAAATTGTAGATTCTAGGTTTGATGTGACAAGTTCTATAGATATTATTTCTGTGAGGCACCCCTTAATTTATAGACTTGTGTGTTTGCCTGCAGGTTGACATACTTTATACTTTACTAATTTTGCACTTAACGTATTTTCTTTCTTGTTTAAATGTGGGATCAGTAAATTAACTGACTGCTTGGTGTGACGGTCTTGTCGAAATTTCCGTGCTTATGACTTCTATTTAGGCATTGGATTATCTGTTTGGTTGTACATACACTTATTTGATATTCTAATACTTCGCTATTGATTTCAATGACCAAGTAATTTTTGAATCTTCAGTGGGTTATTTTTACTCGAGTCTCGCTGAACAATGTATTATTCTATTTATTATTGAAGCTTTTTAATGTTTTCTTCTTTTATCAGTCTTTCAGACAATGCTTACTCTTTGGTAGCTGAGGTACTGAAAAAGTTGGTGGCCATAGCTCCTGCCATTTGTCATTTATTTATTACTGAGCTTGCTGGCTCGGTGCAAAGTCTGACCAGATCTGCGATGGATGAGCTAAACAAGTTTAGGGAAGTGGAAAAAGCACTGCTCAGTACCACTTCAACTGAT</genome_strand>
        <mrna_strand>GTTCTTGAGACACTTACATACTTGGCAAAGAACCATTCTTTAGTTGCAAAGACTCTACTTGAATTCAGGCTCCCTCGACCAGTGCTGGAAGGGCCAATAGTTCCAGATCAGAGGCGGGGAAAAGCTGTTATGGTTGAGGCTGATGGACCAGATAGATGGCAGCTTGAAGGACAAGTATCTCTTGCATTGCTTTTGGGCCTCTTGAATCATCCCCTTTATTTGAGAAGTGTTGCACATCTAGAGCAG......................................................................................CTGTTAAATCTGCTAGATGTTGTAGTCCAAAACACAGAAAGCAAATCAAATGTGCATGAAGAACCTGGCACATCCTCTACAGAGCAACTGACTGGTCCTCCAATCCAATCTGCTGCAGAAATGAATACTGAATCTCATGCAGCTTCATCTGAGGTTGAGGACAAATCTGGAGCATCGTCCTCTGTTGCAAGCAGAGACCAAAGTACTGAAAGTATTCTACTCAGTCTACCACAATTAGAGCTTCGACGCCTGTGCTCATTGCTTGCCAGAGAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTCAGACAATGCTTACTCTTTGGTAGCTGAGGTACTGAAAAAGTTGGTGGCCATAGCTCCTGCCATTTGTCATTTATTTATTACTGAGCTTGCTGGCTCTGTGCAAAGTCTGACCAGATCTGCGATGGATGAGTTAAACAAGTTTAGGGAAGTGGAAAAAGCACTGCTCAGTACCACTTCAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425117" ref_strand="+" ref_description="SGN-E425117 [STM-44-H15]">
      <seq>gttcttgagacacttacatacttggcaaagaaccattctttagttgcaaagactctacttgaattcaggctccctcgaccagtgctggaagggccaatagttccagatcagaggcggggaaaagctgttatggttgaggctgatggaccagatagatggcagcttgaaggacaagtatctcttgcattgcttttgggcctcttgaatcatcccctttatttgagaagtgttgcacatctagagcagctgttaaatctgctagatgttgtagtccaaaacacagaaagcaaatcaaatgtgcatgaagaacctggcacatcctctacagagcaactgactggtcctccaatccaatctgctgcagaaatgaatactgaatctcatgcagcttcatctgaggttgaggacaaatctggagcatcgtcctctgttgcaagcagagaccaaagtactgaaagtattctactcagtctaccacaattagagcttcgacgcctgtgctcattgcttgccagagaaggtctttcagacaatgcttactctttggtagctgaggtactgaaaaagttggtggccatagctcctgccatttgtcatttatttattactgagcttgctggctctgtgcaaagtctgaccagatctgcgatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="34125" stop="35905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34425" g_stop="34670" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34671" i_stop="34756" i_length="86">
            <donor d_prob="0.818" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34757" g_stop="35031" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="521" r_length="275" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35032" i_stop="35471" i_length="440">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35472" g_stop="35605" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="655" r_length="134" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E425117" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34425" e_stop="34670"/>
          <exon e_start="34757" e_stop="35031"/>
          <exon e_start="35472" e_stop="35605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTGAGACACTTACATACCTGGCAAAGAACCATTCTTTAGTTGCAAAGACTCTACTTGAATTCAGGCTCCCTCGACCAGTGCTGGAAGGGCCAATAGTTCCGGATCAGAGGCGGGGAAAAGCTGTTATGGTTGAGGCTGATGGACCAGATAGATGGCAGCTTGAAGGACAAGTATCTCTGGCATTGCTTTTGGGCCTCTTGAACCATCCCCTTTATTTGAGAAGTGTTGCACATCTTGAGCAGGTAGTTTGCACAAGTAGGATGTCTCTTTGAGTAGTCATTATCTAGTGTTTCTTGCTGTTCTCAACTATTTTCCTTTTGGTATCTAGCTGTTAAATCTGCTAGATGTTGTAGTCCAAAACACAGAAAGCAAATCAAATGCGCGTGAAGAACCTGGCACATCCTCTACAGAGCAACTGCCTGGTCCTCCAGTCCAATCTGCTGCTGAAATGAATACTGAATCTCATGCAGCTTCATCTGAGGTTGAGGACAAATCTGGAGCATCGTCCTCTATCACAGGCAGAGACCAAAGTACTGAAAGTATTCTACTCAGTCTACCACAATTAGAACTTCGACGTCTGTGCTCATTGCTTGCCAGAGAAGGGTAAGCTAGTTCCTAATCCTGTGATGTGTATTTGAAATTGTAGATTCTAGGTTTGATGTGACAAGTTCTATAGATATTATTTCTGTGAGGCACCCCTTAATTTATAGACTTGTGTGTTTGCCTGCAGGTTGACATACTTTATACTTTACTAATTTTGCACTTAACGTATTTTCTTTCTTGTTTAAATGTGGGATCAGTAAATTAACTGACTGCTTGGTGTGACGGTCTTGTCGAAATTTCCGTGCTTATGACTTCTATTTAGGCATTGGATTATCTGTTTGGTTGTACATACACTTATTTGATATTCTAATACTTCGCTATTGATTTCAATGACCAAGTAATTTTTGAATCTTCAGTGGGTTATTTTTACTCGAGTCTCGCTGAACAATGTATTATTCTATTTATTATTGAAGCTTTTTAATGTTTTCTTCTTTTATCAGTCTTTCAGACAATGCTTACTCTTTGGTAGCTGAGGTACTGAAAAAGTTGGTGGCCATAGCTCCTGCCATTTGTCATTTATTTATTACTGAGCTTGCTGGCTCGGTGCAAAGTCTGACCAGATCTGCGATGGATG</genome_strand>
        <mrna_strand>GTTCTTGAGACACTTACATACTTGGCAAAGAACCATTCTTTAGTTGCAAAGACTCTACTTGAATTCAGGCTCCCTCGACCAGTGCTGGAAGGGCCAATAGTTCCAGATCAGAGGCGGGGAAAAGCTGTTATGGTTGAGGCTGATGGACCAGATAGATGGCAGCTTGAAGGACAAGTATCTCTTGCATTGCTTTTGGGCCTCTTGAATCATCCCCTTTATTTGAGAAGTGTTGCACATCTAGAGCAG......................................................................................CTGTTAAATCTGCTAGATGTTGTAGTCCAAAACACAGAAAGCAAATCAAATGTGCATGAAGAACCTGGCACATCCTCTACAGAGCAACTGACTGGTCCTCCAATCCAATCTGCTGCAGAAATGAATACTGAATCTCATGCAGCTTCATCTGAGGTTGAGGACAAATCTGGAGCATCGTCCTCTGTTGCAAGCAGAGACCAAAGTACTGAAAGTATTCTACTCAGTCTACCACAATTAGAGCTTCGACGCCTGTGCTCATTGCTTGCCAGAGAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTCAGACAATGCTTACTCTTTGGTAGCTGAGGTACTGAAAAAGTTGGTGGCCATAGCTCCTGCCATTTGTCATTTATTTATTACTGAGCTTGCTGGCTCTGTGCAAAGTCTGACCAGATCTGCGATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602661" ref_strand="+" ref_description="SGN-E602661 [55731]">
      <seq>ggcacatcctctacagagcaactgactggtcctccaatccaatctgctgcagaaatgaatactgaatctcatgcagcttcatctgaggttgaggacaaatctggagcatcgtcctctgttgcaagcagagaccaaagtactgaaagtattctactcagtctaccacaattagagcttcgacgcctgtgctcattgcttgctagagaaggtctttcagacaatgcttactctttggtagctgaggtgctgaaaaagttggtggccatagctcctgccatttgtcatttatttattactgagcttgctggctctgtgcaaagtctgaccagatctgcgatggatgagttaaacaagtttagggaagtggaaaaagcactgctcagtaccacttcaactgatggcgctgtgatactcagggttttacaagcattaagctctcttgttgcttcaattggtgacaagaacaacgagaatcaaattatttctgagaaggagcacggtgctactatctccctggtttgggacattaacacagctttagaacctctatggcaggagctaagcacttgcattagcacaatagagagtttttctgaaacagcacccaacctgcctcgctcatccattgttacctcatctaaacctgctggagcaatgccctccgtccctgcaggcacacaaaacattttaccgttacatagagtcctttttgtgatgtgtgagaagttgcatcctgggcatttggggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="34523" stop="36311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34823" g_stop="35031" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35032" i_stop="35471" i_length="440">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35472" g_stop="36011" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="750" r_length="541" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E602661" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E602661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34823" e_stop="35031"/>
          <exon e_start="35472" e_stop="36011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACATCCTCTACAGAGCAACTGCCTGGTCCTCCAGTCCAATCTGCTGCTGAAATGAATACTGAATCTCATGCAGCTTCATCTGAGGTTGAGGACAAATCTGGAGCATCGTCCTCTATCACAGGCAGAGACCAAAGTACTGAAAGTATTCTACTCAGTCTACCACAATTAGAACTTCGACGTCTGTGCTCATTGCTTGCCAGAGAAGGGTAAGCTAGTTCCTAATCCTGTGATGTGTATTTGAAATTGTAGATTCTAGGTTTGATGTGACAAGTTCTATAGATATTATTTCTGTGAGGCACCCCTTAATTTATAGACTTGTGTGTTTGCCTGCAGGTTGACATACTTTATACTTTACTAATTTTGCACTTAACGTATTTTCTTTCTTGTTTAAATGTGGGATCAGTAAATTAACTGACTGCTTGGTGTGACGGTCTTGTCGAAATTTCCGTGCTTATGACTTCTATTTAGGCATTGGATTATCTGTTTGGTTGTACATACACTTATTTGATATTCTAATACTTCGCTATTGATTTCAATGACCAAGTAATTTTTGAATCTTCAGTGGGTTATTTTTACTCGAGTCTCGCTGAACAATGTATTATTCTATTTATTATTGAAGCTTTTTAATGTTTTCTTCTTTTATCAGTCTTTCAGACAATGCTTACTCTTTGGTAGCTGAGGTACTGAAAAAGTTGGTGGCCATAGCTCCTGCCATTTGTCATTTATTTATTACTGAGCTTGCTGGCTCGGTGCAAAGTCTGACCAGATCTGCGATGGATGAGCTAAACAAGTTTAGGGAAGTGGAAAAAGCACTGCTCAGTACCACTTCAACTGATGGCGCTGTGATACTCAGGGTTTTACAAGCATTAAGCTCTCTTGTTGCTTCAATTGGTGACAAGAACAACGAGAATCAAATTATTTCTGAGAAGGAGCACGGTGTTACTATCTCCCTGGTTTGGGACATTAACACAGCTCTAGAACCTCTATGGCAGGAGCTGAGCACTTGCATTAGCACAATGGAGAGTTTTTCAGAAACAGCACCCAACCTGCCTCAATCATCTATTGTTACCTCATCTAAACCTGCTGGAGCAATGTCTTCGCTTCCTGCAGGCTCACAAAACATTTTACCG-TACGTAGAGTCCTTTTTTGTGATGTGTGAGAAGTTGCATCCTGGGCATTT-GGGTGC</genome_strand>
        <mrna_strand>GGCACATCCTCTACAGAGCAACTGACTGGTCCTCCAATCCAATCTGCTGCAGAAATGAATACTGAATCTCATGCAGCTTCATCTGAGGTTGAGGACAAATCTGGAGCATCGTCCTCTGTTGCAAGCAGAGACCAAAGTACTGAAAGTATTCTACTCAGTCTACCACAATTAGAGCTTCGACGCCTGTGCTCATTGCTTGCTAGAGAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTCAGACAATGCTTACTCTTTGGTAGCTGAGGTGCTGAAAAAGTTGGTGGCCATAGCTCCTGCCATTTGTCATTTATTTATTACTGAGCTTGCTGGCTCTGTGCAAAGTCTGACCAGATCTGCGATGGATGAGTTAAACAAGTTTAGGGAAGTGGAAAAAGCACTGCTCAGTACCACTTCAACTGATGGCGCTGTGATACTCAGGGTTTTACAAGCATTAAGCTCTCTTGTTGCTTCAATTGGTGACAAGAACAACGAGAATCAAATTATTTCTGAGAAGGAGCACGGTGCTACTATCTCCCTGGTTTGGGACATTAACACAGCTTTAGAACCTCTATGGCAGGAGCTAAGCACTTGCATTAGCACAATAGAGAGTTTTTCTGAAACAGCACCCAACCTGCCTCGCTCATCCATTGTTACCTCATCTAAACCTGCTGGAGCAATGCCCTCCGTCCCTGCAGGCACACAAAACATTTTACCGTTACATAGAGTCC-TTTTTGTGATGTGTGAGAAGTTGCATCCTGGGCATTTGGGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245586" ref_strand="+" ref_description="SGN-E245586 [cLEF-43-M19]">
      <seq>acatcctctacagagcaactgcctggtcctccagtccaagctgctgctgaaatgaatactgaatctcatgcagcttcatctgaggttgaggacaaatctggagcatcgtcctctatcacaggcagagaccaaagtactgaaagtattctactcagtctaccacaattagaacttcgacgtctgtgctcattgcttgccagagaaggtctttcagacaatgcttactctttggtagctgaggtactgaaaaagttggtggccatagctcctgccatttgtcatttatttattactgagcttgctggctctgtgcaaagtctgaccagatctgcgatggatgagctaaacaagtttagggaagtggaaaaagcactgctcagtaccacttcaactgatggcgctgtgatactcagggttttacaagcattaagctctcttgttgcttcaattggtgacaagaaaaacgagaatcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="34526" stop="36041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34826" g_stop="35031" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35032" i_stop="35471" i_length="440">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35472" g_stop="35741" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="476" r_length="270" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E245586" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34826" e_stop="35031"/>
          <exon e_start="35472" e_stop="35741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCCTCTACAGAGCAACTGCCTGGTCCTCCAGTCCAATCTGCTGCTGAAATGAATACTGAATCTCATGCAGCTTCATCTGAGGTTGAGGACAAATCTGGAGCATCGTCCTCTATCACAGGCAGAGACCAAAGTACTGAAAGTATTCTACTCAGTCTACCACAATTAGAACTTCGACGTCTGTGCTCATTGCTTGCCAGAGAAGGGTAAGCTAGTTCCTAATCCTGTGATGTGTATTTGAAATTGTAGATTCTAGGTTTGATGTGACAAGTTCTATAGATATTATTTCTGTGAGGCACCCCTTAATTTATAGACTTGTGTGTTTGCCTGCAGGTTGACATACTTTATACTTTACTAATTTTGCACTTAACGTATTTTCTTTCTTGTTTAAATGTGGGATCAGTAAATTAACTGACTGCTTGGTGTGACGGTCTTGTCGAAATTTCCGTGCTTATGACTTCTATTTAGGCATTGGATTATCTGTTTGGTTGTACATACACTTATTTGATATTCTAATACTTCGCTATTGATTTCAATGACCAAGTAATTTTTGAATCTTCAGTGGGTTATTTTTACTCGAGTCTCGCTGAACAATGTATTATTCTATTTATTATTGAAGCTTTTTAATGTTTTCTTCTTTTATCAGTCTTTCAGACAATGCTTACTCTTTGGTAGCTGAGGTACTGAAAAAGTTGGTGGCCATAGCTCCTGCCATTTGTCATTTATTTATTACTGAGCTTGCTGGCTCGGTGCAAAGTCTGACCAGATCTGCGATGGATGAGCTAAACAAGTTTAGGGAAGTGGAAAAAGCACTGCTCAGTACCACTTCAACTGATGGCGCTGTGATACTCAGGGTTTTACAAGCATTAAGCTCTCTTGTTGCTTCAATTGGTGACAAGAACAACGAGAATCAAAT</genome_strand>
        <mrna_strand>ACATCCTCTACAGAGCAACTGCCTGGTCCTCCAGTCCAAGCTGCTGCTGAAATGAATACTGAATCTCATGCAGCTTCATCTGAGGTTGAGGACAAATCTGGAGCATCGTCCTCTATCACAGGCAGAGACCAAAGTACTGAAAGTATTCTACTCAGTCTACCACAATTAGAACTTCGACGTCTGTGCTCATTGCTTGCCAGAGAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTCAGACAATGCTTACTCTTTGGTAGCTGAGGTACTGAAAAAGTTGGTGGCCATAGCTCCTGCCATTTGTCATTTATTTATTACTGAGCTTGCTGGCTCTGTGCAAAGTCTGACCAGATCTGCGATGGATGAGCTAAACAAGTTTAGGGAAGTGGAAAAAGCACTGCTCAGTACCACTTCAACTGATGGCGCTGTGATACTCAGGGTTTTACAAGCATTAAGCTCTCTTGTTGCTTCAATTGGTGACAAGAAAAACGAGAATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458568" ref_strand="+" ref_description="SGN-E458568 [cPRO-6-M3]">
      <seq>gcaggagctaagcacttgcattagcacaatagagagtttttctgaaacagcactccacctgcctcgctcatccattgttacctcatctaaacctgctggagcaatgcctccgctccctgcaggcacacaaaacattttaccgcacatagagtccttttttgtgatgtgtgacaagttgcatcctgggcatttgggtgcagggcaagagttcagtattgcgacagttcctgatccagaataagctactgcttctgctatgcagccaaaaacacctacatcggcaacaaaagttgatgagaagcacattgcttttgtaaaattcgcagagaagcacaaaaaacttcttaatgcttttgttcggcagaatcctggactactggagaagtctttctccatcatgctgaaggttcctcgttttgctgattttgacaataaaaagtcatactttaaatctaatattaaacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="35514" stop="36580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35814" g_stop="36280" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E458568" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35814" e_stop="36280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGAGCTGAGCACTTGCATTAGCACAATGGAGAGTTTTTCAGAAACAGCACCCAACCTGCCTCAATCATCTATTGTTACCTCATCTAAACCTGCTGGAGCAATGTCTTCGCTTCCTGCAGGCTCACAAAACATTTTACCGTACGTAGAGTCCTTTTTTGTGATGTGTGAGAAGTTGCATCCTGGGCATTTGGGTGCAGGACAGGAGTTCAGTATTGCGACAGTTCCTGATCCAGAAGAGGCTACTGCTTCTGCTATGCAGCCAAAAACACCTACATCTGCAACAAAAGTTGATGAGAAGCACATTGCTTTTGTAAAATTTGCAGAGAAGCACAAAAAACTTCTTAATGCTTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCGATCATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCCTACTTCAGATCTAAGATTAAACATC</genome_strand>
        <mrna_strand>GCAGGAGCTAAGCACTTGCATTAGCACAATAGAGAGTTTTTCTGAAACAGCACTCCACCTGCCTCGCTCATCCATTGTTACCTCATCTAAACCTGCTGGAGCAATGCCTCCGCTCCCTGCAGGCACACAAAACATTTTACCGCACATAGAGTCCTTTTTTGTGATGTGTGACAAGTTGCATCCTGGGCATTTGGGTGCAGGGCAAGAGTTCAGTATTGCGACAGTTCCTGATCCAGAATAAGCTACTGCTTCTGCTATGCAGCCAAAAACACCTACATCGGCAACAAAAGTTGATGAGAAGCACATTGCTTTTGTAAAATTCGCAGAGAAGCACAAAAAACTTCTTAATGCTTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCCATCATGCTGAAGGTTCCTCGTTTTGCTGATTTTGACAATAAAAAGTCATACTTTAAATCTAATATTAAACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337830" ref_strand="+" ref_description="SGN-E337830 [cTOE-17-P18]">
      <seq>tcatctattgttacctcatctaaacctgctggagcaatgtcttcgctccctgcaggctcacaaaacattttaccgtacgtagagtccttttttgtgatgtgtgagaagttgcatcctgggcatttgggtgcaggacaggagttcagtattgcgacagttcctgatccagaagaggctactgcttctgctatgcagccaaaaacacctacatctgcaacaaaagttgatgagaagcacattgcctttgtaaaatttgcagagaagcacaaaaaacttcttaatgcttttgttcggcagaatcctggactactggagaagtctttctcgatcatgctgaaggttcctcgttttgttgattttgacaataaaaggtcctacttcagatctaagattaaacatcaacatgatcatcatcacagtcctctgagaatttctgtgagaagagcttatatacttgaagattcatataatcagctgcgcatgaggacaactcaagaattgaaagggagattgactgtacatttccaaggggaagaaagaattgatgctggtggacttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="35581" stop="36741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35881" g_stop="36441" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E337830" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35881" e_stop="36441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTATTGTTACCTCATCTAAACCTGCTGGAGCAATGTCTTCGCTTCCTGCAGGCTCACAAAACATTTTACCGTACGTAGAGTCCTTTTTTGTGATGTGTGAGAAGTTGCATCCTGGGCATTTGGGTGCAGGACAGGAGTTCAGTATTGCGACAGTTCCTGATCCAGAAGAGGCTACTGCTTCTGCTATGCAGCCAAAAACACCTACATCTGCAACAAAAGTTGATGAGAAGCACATTGCTTTTGTAAAATTTGCAGAGAAGCACAAAAAACTTCTTAATGCTTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCGATCATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCCTACTTCAGATCTAAGATTAAACATCAACATGATCATCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTACATTTCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACT</genome_strand>
        <mrna_strand>TCATCTATTGTTACCTCATCTAAACCTGCTGGAGCAATGTCTTCGCTCCCTGCAGGCTCACAAAACATTTTACCGTACGTAGAGTCCTTTTTTGTGATGTGTGAGAAGTTGCATCCTGGGCATTTGGGTGCAGGACAGGAGTTCAGTATTGCGACAGTTCCTGATCCAGAAGAGGCTACTGCTTCTGCTATGCAGCCAAAAACACCTACATCTGCAACAAAAGTTGATGAGAAGCACATTGCCTTTGTAAAATTTGCAGAGAAGCACAAAAAACTTCTTAATGCTTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCGATCATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCCTACTTCAGATCTAAGATTAAACATCAACATGATCATCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTACATTTCCAAGGGGAAGAAAGAATTGATGCTGGTGGACTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451030" ref_strand="+" ref_description="SGN-E451030 [cSTS-11-E2]">
      <seq>tccgctccctgcaggcaccacaaaacattttaccgtacactagagtccttttttgtgatgtgtgagaagttgcatcctgggcatttgggtgcagggcaggagttcagtattgcgacagttcctgatccagaagaagctactgcttctgctatgcagccaaaaacacctacatcggcaacaaaagttgatgagaagcacattgcttttgtaaaatttgcagagaagcacaaaaaacttcttaatgcttttgttcggcagaatcctggactactggagaagtctttctccatcatgctgaaggttcctcgttttgttgattttgacaataaaaggtcatactttagatctaagattaaacatcaacacgatcatcatcacagtcctctgagaatttctgtgagaagagcttatatacttgaagattcatataatcagcttcgcatgaggacaactcaagaattgaaagggagattgactgtacatttccaaggggaagaaggaattgatgctggtggacttactagggaatggtatcagttactgtccagagtaatttttgacaagggagcactattgtttactacagttggcaatgaagcaacatttcagccaaatcccaactctgtttaccaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="35639" stop="36856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35922" g_stop="36556" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E451030" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35922" e_stop="36556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCTTCCTGCAGGC-TCACAAAACATTTTACCGTAC-GTAGAGTCCTTTTTTGTGATGTGTGAGAAGTTGCATCCTGGGCATTTGGGTGCAGGACAGGAGTTCAGTATTGCGACAGTTCCTGATCCAGAAGAGGCTACTGCTTCTGCTATGCAGCCAAAAACACCTACATCTGCAACAAAAGTTGATGAGAAGCACATTGCTTTTGTAAAATTTGCAGAGAAGCACAAAAAACTTCTTAATGCTTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCGATCATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCCTACTTCAGATCTAAGATTAAACATCAACATGATCATCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTACATTTCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTG</genome_strand>
        <mrna_strand>TCCGCTCCCTGCAGGCACCACAAAACATTTTACCGTACACTAGAGTCCTTTTTTGTGATGTGTGAGAAGTTGCATCCTGGGCATTTGGGTGCAGGGCAGGAGTTCAGTATTGCGACAGTTCCTGATCCAGAAGAAGCTACTGCTTCTGCTATGCAGCCAAAAACACCTACATCGGCAACAAAAGTTGATGAGAAGCACATTGCTTTTGTAAAATTTGCAGAGAAGCACAAAAAACTTCTTAATGCTTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCCATCATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCATACTTTAGATCTAAGATTAAACATCAACACGATCATCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTTCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTACATTTCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTACTGTCCAGAGTAATTTTTGACAAGGGAGCACTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTTTACCAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268721" ref_strand="+" ref_description="SGN-E268721 [cLEM-16-L23]">
      <seq>gtagagtccttttttgtgatgtgtgagaagttgcatcctgagcatttgggtgcaggacaagagttcagtattgcgacagttcctgatccagaagaagctactgcttctgctatgcagccaaaaacacctacatctgcaacaaaagttgatgagaagcacattgcttttgtaaaatttgcagagaagcacaaaaaacttcttaatgcttttgttcggcagaatcctggactactggagaagtctttctcgatcatgctgaaggttcctcgttttgttgattttgacaataaaaggtcctacttcagatctaagattaaacatcaacatgatcatcatcacagtcctctgagaatttctgtgagaagagcttatatacttgaagattcatataatcagctgcgcatgaagacaactcaagaattgaaagggagattgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="35659" stop="36696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35959" g_stop="36396" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E268721" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35959" e_stop="36396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAGTCCTTTTTTGTGATGTGTGAGAAGTTGCATCCTGGGCATTTGGGTGCAGGACAGGAGTTCAGTATTGCGACAGTTCCTGATCCAGAAGAGGCTACTGCTTCTGCTATGCAGCCAAAAACACCTACATCTGCAACAAAAGTTGATGAGAAGCACATTGCTTTTGTAAAATTTGCAGAGAAGCACAAAAAACTTCTTAATGCTTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCGATCATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCCTACTTCAGATCTAAGATTAAACATCAACATGATCATCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACT</genome_strand>
        <mrna_strand>GTAGAGTCCTTTTTTGTGATGTGTGAGAAGTTGCATCCTGAGCATTTGGGTGCAGGACAAGAGTTCAGTATTGCGACAGTTCCTGATCCAGAAGAAGCTACTGCTTCTGCTATGCAGCCAAAAACACCTACATCTGCAACAAAAGTTGATGAGAAGCACATTGCTTTTGTAAAATTTGCAGAGAAGCACAAAAAACTTCTTAATGCTTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCGATCATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCCTACTTCAGATCTAAGATTAAACATCAACATGATCATCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAAGACAACTCAAGAATTGAAAGGGAGATTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619957" ref_strand="+" ref_description="SGN-E619957 [70653]">
      <seq>catcctgggcatttgggtgcagggcagganngtcagntaatgcgacagttcctgatccagaagaagctactgcttctgctatgcagccaaaaacacctacatcggcaacaaaagttgatgagaagcacattgcttttgtaaaatttgcagagaagcacaaaaaacttcttaatgcttttgttcggcagaatcctggactactggagaagtctttctccatcatgctgaaggttcctcgttttgttgattttgacaataaaaggtcatactttagatctaagattaaacatcaacacgatcatcatcacagtcctctgagaatttctgtgagaagagcttatatacttgaagattcatataatcagcttcgcatgaggacaactcaagaattgaaagggagattgactgtacatttccaaggggaagaaggaattgatgctggtggacttactagggaatggtatcagttactgtccagagtaatttttgacaagggagcactattgtttactacagttggcaatgaagcaacatttcagccaaatcccaactctgtttaccaaactgagcacctctcatacttcaaatttgttgggcgagttgttggcaaggcactatttgatggtcaacttcttgatgttcattttacacggtccttctacaagcacatacttggtgctaaagtgacatatcatgatatcgaagctattgatcctgactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="35692" stop="37095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35992" g_stop="36591" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36592" i_stop="36674" i_length="83">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36675" g_stop="36795" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="723" r_length="121" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E619957" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35992" e_stop="36591"/>
          <exon e_start="36675" e_stop="36795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCTGGGCATTTGGGTGCAGGACAGGAGT-TCAG-TATTGCGACAGTTCCTGATCCAGAAGAGGCTACTGCTTCTGCTATGCAGCCAAAAACACCTACATCTGCAACAAAAGTTGATGAGAAGCACATTGCTTTTGTAAAATTTGCAGAGAAGCACAAAAAACTTCTTAATGCTTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCGATCATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCCTACTTCAGATCTAAGATTAAACATCAACATGATCATCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTACATTTCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTTGTGAGTATTTTCCTTCTTGGTTCTGTTTGCTTGACTCATTTATTTTTAAACAATATTTAATGTGCTTTATGTAAATATCCCAGGTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACT</genome_strand>
        <mrna_strand>CATCCTGGGCATTTGGGTGCAGGGCAGGANNGTCAGNTAATGCGACAGTTCCTGATCCAGAAGAAGCTACTGCTTCTGCTATGCAGCCAAAAACACCTACATCGGCAACAAAAGTTGATGAGAAGCACATTGCTTTTGTAAAATTTGCAGAGAAGCACAAAAAACTTCTTAATGCTTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCCATCATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCATACTTTAGATCTAAGATTAAACATCAACACGATCATCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTTCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTACATTTCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTACTGTCCAGAGTAATTTTTGACAAGGGAGCACTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTTTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTT...................................................................................GTTGGCAAGGCACTATTTGATGGTCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306944" ref_strand="+" ref_description="SGN-E306944 [cLEY-11-M4]">
      <seq>aagaggctactgcttctgctatgcagccaaaaacacctacgtctgcaacaaaagttgatgagaagcacattgcttttgtaaaatttgcagagaagcacaaaaaacttcttaatgcttttgttcggcagaatcctggactactggagaagtctttctcgatcatgctgaaggttcctcgttttgttgattttgacaataaaaggtcctacttcagatctaagattaaacatcaacatgatcatcatcacagtcctctgagaatttctgtgagaagagcttatatacttgaagattcatataatcagctgcgcatgaggacaactcaagaattgaaagggagattgactgtacatttccaaggggaagaaggaattgatgctggtggacttactagggaatggtatcagttattgtccagagtaatttttgacaagggagcgctattgtttactacagttggcaatgaagcaacatttcagccaaatcccaactctgtgtaccaaactgagcacctctcatacttcaaatttgttgggcgagttgttgggaaggcactatttgacggccaacttcttgatgttcattttacacggtccttctacaagcacatacttgatgctaaagtgacatatcatgatatcgaagctattgatcctgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="35750" stop="37093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36050" g_stop="36591" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36592" i_stop="36674" i_length="83">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36675" g_stop="36793" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="661" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E306944" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36050" e_stop="36591"/>
          <exon e_start="36675" e_stop="36793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGCTACTGCTTCTGCTATGCAGCCAAAAACACCTACATCTGCAACAAAAGTTGATGAGAAGCACATTGCTTTTGTAAAATTTGCAGAGAAGCACAAAAAACTTCTTAATGCTTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCGATCATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCCTACTTCAGATCTAAGATTAAACATCAACATGATCATCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTACATTTCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTTGTGAGTATTTTCCTTCTTGGTTCTGTTTGCTTGACTCATTTATTTTTAAACAATATTTAATGTGCTTTATGTAAATATCCCAGGTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTA</genome_strand>
        <mrna_strand>AAGAGGCTACTGCTTCTGCTATGCAGCCAAAAACACCTACGTCTGCAACAAAAGTTGATGAGAAGCACATTGCTTTTGTAAAATTTGCAGAGAAGCACAAAAAACTTCTTAATGCTTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCGATCATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCCTACTTCAGATCTAAGATTAAACATCAACATGATCATCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTACATTTCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTT...................................................................................GTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGATGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243788" ref_strand="+" ref_description="SGN-E243788 [cLED-35-L5]">
      <seq>ctacatctgcaacaaaagttgatgagaagcacattgcttttgtaaaatttgcagagaagcacaaaaaacttcttaatgcttttgttcggcagaatcctggactactggagaagtctttctcgatcatgctgaaggttcctcgttttgttgattttgacaataaaaggtcctacttcagatctaagattaaacatcaacatgatcatcatcacagtcctctgagaatttctgtgagaagagcttatatacttgaagattcatataatcagctgcgcatgaggacaactcaagaattgaaagggagattgactgtacatttccaaggggaagaaggaattgatgctggtggacttactagggaatggtatcagttattgtccagagtaatttttgacaagggagcgctattgtttactacagttggcaatgaagcaacatttcagccaaatcccaactctgtgtaccaaactgagcacctctcatacttcaaatttgttgggcgagttgttgggaaggcactatttgacggccaacttcttgatgttcattttacacggtccttctacaagcacatacttgatgctaaagtgacatatcatgatatcgaagctattgatcctgactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="35786" stop="37094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36086" g_stop="36591" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36592" i_stop="36674" i_length="83">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36675" g_stop="36794" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="626" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E243788" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36086" e_stop="36591"/>
          <exon e_start="36675" e_stop="36794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTGCAACAAAAGTTGATGAGAAGCACATTGCTTTTGTAAAATTTGCAGAGAAGCACAAAAAACTTCTTAATGCTTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCGATCATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCCTACTTCAGATCTAAGATTAAACATCAACATGATCATCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTACATTTCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTTGTGAGTATTTTCCTTCTTGGTTCTGTTTGCTTGACTCATTTATTTTTAAACAATATTTAATGTGCTTTATGTAAATATCCCAGGTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTAC</genome_strand>
        <mrna_strand>CTACATCTGCAACAAAAGTTGATGAGAAGCACATTGCTTTTGTAAAATTTGCAGAGAAGCACAAAAAACTTCTTAATGCTTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCGATCATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCCTACTTCAGATCTAAGATTAAACATCAACATGATCATCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTACATTTCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTT...................................................................................GTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGATGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320823" ref_strand="+" ref_description="SGN-E320823 [cTOB-27-O6]">
      <seq>ttttgttcggcagaatcctggactactggagaagtctttctcgatcatgctgaaggttcctcgttttgttgattttgacaataaaaggtcctacttcagatctaagattaaacatcaacatgatcatcatcacagtcctctgagaatttctgtgagaagagcttatatacttgaagattcatataatcagctgcgcatgaggacaactcaagaattgaaagggagattgactgtacnatttccaggggaagaaggaattgatgctggtggacttactanggaatggtatcagttattgtccagagtaatttttgacaagggagcgctattgtttactacagttggcaatgaagcaacatttcagccaaatcccaactctgtgtaccaaactgagcacctctcatacttcaaatttgtttgggcgagttggtgggaaggcactatttgacgggcaacttcttgatgttcattttacacgggtcttctacaagcacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="35865" stop="37045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36165" g_stop="36591" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36592" i_stop="36674" i_length="83">
            <donor d_prob="0.926" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36675" g_stop="36745" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="499" r_length="71" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E320823" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36165" e_stop="36591"/>
          <exon e_start="36675" e_stop="36745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCGATCATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCCTACTTCAGATCTAAGATTAAACATCAACATGATCATCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTAC-ATTTCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTG-TTGGGCGAGTTGTGAGTATTTTCCTTCTTGGTTCTGTTTGCTTGACTCATTTATTTTTAAACAATATTTAATGTGCTTTATGTAAATATCCCAGGTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACT</genome_strand>
        <mrna_strand>TTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCGATCATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCCTACTTCAGATCTAAGATTAAACATCAACATGATCATCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTACNATTTCC-AGGGGAAGAAGGAATTGATGCTGGTGGACTTACTANGGAATGGTATCAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTTGGGCGAGTT...................................................................................GGTGGGAAGGCACTATTTGACGGGCAACTTCTTGATGTTCATTTTACACGGGTCTTCTACAAGCACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269756" ref_strand="+" ref_description="SGN-E269756 [cLEM-17-F22]">
      <seq>tcatcacagtcctctgagaatttctgtgagaagagcttatatacttgaagattcatataatcagctgcgcatgaggacaactcaagaattgaaagggagattgactgtacatttccaaggggaagaaggaattgatgctggtggacttactagggaatggtatcagttattgtccagagtaatttttgacaagggagcgctattgtttactacagttggcaatgaagcaacatttcagccaaatcccaactctgtgtaccaaactgagcacctctcatacttcaaatttgttgggcgagttgttgggaaggcactatttgacggccaacttcttgatgttcattttacacggtccttctacaagcacatacttgatgctaaagtgacatatcatgatatcgaagctattgatcctgactacttcaaaaatttgaaatggctgcttgagaatgacatcagtgatattttagaccctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="35991" stop="37222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36291" g_stop="36591" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36592" i_stop="36674" i_length="83">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36675" g_stop="36821" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="448" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36822" i_stop="36895" i_length="74">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36896" g_stop="36927" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="480" r_length="32" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E269756" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36291" e_stop="36591"/>
          <exon e_start="36675" e_stop="36821"/>
          <exon e_start="36896" e_stop="36927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTACATTTCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTTGTGAGTATTTTCCTTCTTGGTTCTGTTTGCTTGACTCATTTATTTTTAAACAATATTTAATGTGCTTTATGTAAATATCCCAGGTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAGGTGCAGTGTTTTTTCTGTTCTCTGTGATTATATGTCCAAAAATTTGCTCTGCTCACGTTTCTTGTTTTGTGTAGAATGACATCAGTGATATTTTAGACCTTACATT</genome_strand>
        <mrna_strand>TCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTACATTTCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTT...................................................................................GTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGATGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAG..........................................................................AATGACATCAGTGATATTTTAGACCCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736813" ref_strand="+" ref_description="SGN-E736813 [LC07BC11]">
      <seq>ccatatagcttatatacttgaagattcatataatcagctgcgcatgaggacaactcaagaattgaaagggagattgactgtacatttccaaggggaagaaggaattgatgctggtggacttactagggaatggtatcagttattgtccagagtaatttttgacaagggagcgctattgtttactacagttggcaatgaagcaacatttcagccaaatcccaactctgtgtaccaaactgagcacctctcatacttcaaatttgttgggcgagttgttgggaaggcactatttgacggccaacttcttgatgttcactttacacggtccttctacaagcacatacttggtgctaaagtgacatatcatgatatcgaagctattgatcctgactacttcaaaaatttgaaatggctgcttgagaatgacatcagtgatattttagaccttacattcagtattgatgctgatgaagagaagttgatactttatgaacgcaatgaggtgactgattatgaactaatcccaggtggacgaaatatcagagtcacggaggaaaataaccaacagtatgtcgacttggttgctgaaccatcggttgacgactgctatccgtcctcagataaatgcatttttggaaggattcagtgatttgattccgcgagagctgatctctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="36022" stop="37526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36318" g_stop="36591" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36592" i_stop="36674" i_length="83">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36675" g_stop="36821" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="421" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36822" i_stop="36895" i_length="74">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36896" g_stop="36976" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="502" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36977" i_stop="37052" i_length="76">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37053" g_stop="37226" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="677" r_length="175" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E736813" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36318" e_stop="36591"/>
          <exon e_start="36675" e_stop="36821"/>
          <exon e_start="36896" e_stop="36976"/>
          <exon e_start="37053" e_stop="37226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTACATTTCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTTGTGAGTATTTTCCTTCTTGGTTCTGTTTGCTTGACTCATTTATTTTTAAACAATATTTAATGTGCTTTATGTAAATATCCCAGGTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAGGTGCAGTGTTTTTTCTGTTCTCTGTGATTATATGTCCAAAAATTTGCTCTGCTCACGTTTCTTGTTTTGTGTAGAATGACATCAGTGATATTTTAGACCTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAGGTATGAGTTCTTCTGCGGCAATTGAATTTTAAGCATTGTTGTTAGAAAGGCTCTGATTGCAATTTGTGTAATGCAGGTGACTGATTATGAACTAATCCCAGGTGGACGAAATATCAGAGTCACGGAGGAAAATAAGCAACAGTATGTCGACTTGGTTGCTG-AGCATCGGTTGACGACTGCTATCCGTCCTCAGATAAATGCATTTTTGGAAGGATTCAGTGAATTGATTCCGCGAGAGCTGATCTCTATT</genome_strand>
        <mrna_strand>CCATATAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTACATTTCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTT...................................................................................GTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCACTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAG..........................................................................AATGACATCAGTGATATTTTAGACCTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAG............................................................................GTGACTGATTATGAACTAATCCCAGGTGGACGAAATATCAGAGTCACGGAGGAAAATAACCAACAGTATGTCGACTTGGTTGCTGAACCATCGGTTGACGACTGCTATCCGTCCTCAGATAAATGCATTTTTGGAAGGATTCAGTGATTTGATTCCGCGAGAGCTGATCTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205562" ref_strand="+" ref_description="SGN-E205562 [cLEC-21-K13]">
      <seq>tccaaggggaagaaggaattgatgctggtggacttactagggaatggtatcagttattgtccagagtaatttttgacaagggagcgctattgtttactacagttggcaatgaagcaacatttcagccaaatcccaactctgtgtaccaaactgagcacctctcatacttcaaatttgttgggcgagttgttgggaaggcactatttgacggccaacttcttgatgttcattttacacggtccttctacaagcacatacttgatgctaaagtgacatatcatgatatcgaagctattgatcctgactacttcaaaaatttgaaatggctgcttgagaatgacatcagtgatattttagaccttacattcagtattgatgctgatgaagagaagttgatactttatgaacgcaatgaggtgactgattatgaactaatcccaggtggacgaaatatcagagtcacggaggaaaataagcaacagtatgtcaacttggttgctgagcatcggttgacgactgctatccgtcctcagataaatgcatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="36104" stop="37484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36404" g_stop="36591" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36592" i_stop="36674" i_length="83">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36675" g_stop="36821" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="335" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36822" i_stop="36895" i_length="74">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36896" g_stop="36976" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="416" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36977" i_stop="37052" i_length="76">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37053" g_stop="37184" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="548" r_length="132" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E205562" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36404" e_stop="36591"/>
          <exon e_start="36675" e_stop="36821"/>
          <exon e_start="36896" e_stop="36976"/>
          <exon e_start="37053" e_stop="37184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTTGTGAGTATTTTCCTTCTTGGTTCTGTTTGCTTGACTCATTTATTTTTAAACAATATTTAATGTGCTTTATGTAAATATCCCAGGTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAGGTGCAGTGTTTTTTCTGTTCTCTGTGATTATATGTCCAAAAATTTGCTCTGCTCACGTTTCTTGTTTTGTGTAGAATGACATCAGTGATATTTTAGACCTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAGGTATGAGTTCTTCTGCGGCAATTGAATTTTAAGCATTGTTGTTAGAAAGGCTCTGATTGCAATTTGTGTAATGCAGGTGACTGATTATGAACTAATCCCAGGTGGACGAAATATCAGAGTCACGGAGGAAAATAAGCAACAGTATGTCGACTTGGTTGCTGAGCATCGGTTGACGACTGCTATCCGTCCTCAGATAAATGCATTTTTG</genome_strand>
        <mrna_strand>TCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTT...................................................................................GTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGATGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAG..........................................................................AATGACATCAGTGATATTTTAGACCTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAG............................................................................GTGACTGATTATGAACTAATCCCAGGTGGACGAAATATCAGAGTCACGGAGGAAAATAAGCAACAGTATGTCAACTTGGTTGCTGAGCATCGGTTGACGACTGCTATCCGTCCTCAGATAAATGCATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414390" ref_strand="+" ref_description="SGN-E414390 [STM-19-O8]">
      <seq>cagttactgtccagagtaatttttgacaagggagcactattgtttactacagttggcaatgaagcaacatttcagccaaatcccaactctgtttaccaaactgagcacctctcatacttcaaatttgttgggcgagttgttggcaaggcactatttgatggtcaacttcttgatgttcattttacacggtccttctacaagcacatacttggtgctaaagtgacatatcatgatatcgaagctattgatcctgactacttcaaaaatttgaaatggctgcttgagaatgacataagtgatattttagaccttacattcagtattgatgctgatgaagagaagttgatactttatgaacgcaatgaggtgactgactatgaactaatcccgggtggacgaaatatcagagtcactgaggaaaataagcaacagtatgttgacttggttgctgagcatcggttgacgactgctatccgtcctcagataaatgcatttttggaaggattcagtgaattgattccgcgagagctgatctctatttttcatgacaaggaacttgagttgttaattagcggtcttccagacatcgatcttgatgacttaagggcaaatacagaatattctggatacagcccagcttcacctgttattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="36154" stop="37754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36454" g_stop="36591" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36592" i_stop="36674" i_length="83">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36675" g_stop="36821" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="285" r_length="147" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36822" i_stop="36895" i_length="74">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36896" g_stop="36976" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="366" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36977" i_stop="37052" i_length="76">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37053" g_stop="37278" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="592" r_length="226" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37279" i_stop="37394" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37395" g_stop="37454" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="652" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E414390" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36454" e_stop="36591"/>
          <exon e_start="36675" e_stop="36821"/>
          <exon e_start="36896" e_stop="36976"/>
          <exon e_start="37053" e_stop="37278"/>
          <exon e_start="37395" e_stop="37454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTTGTGAGTATTTTCCTTCTTGGTTCTGTTTGCTTGACTCATTTATTTTTAAACAATATTTAATGTGCTTTATGTAAATATCCCAGGTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAGGTGCAGTGTTTTTTCTGTTCTCTGTGATTATATGTCCAAAAATTTGCTCTGCTCACGTTTCTTGTTTTGTGTAGAATGACATCAGTGATATTTTAGACCTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAGGTATGAGTTCTTCTGCGGCAATTGAATTTTAAGCATTGTTGTTAGAAAGGCTCTGATTGCAATTTGTGTAATGCAGGTGACTGATTATGAACTAATCCCAGGTGGACGAAATATCAGAGTCACGGAGGAAAATAAGCAACAGTATGTCGACTTGGTTGCTGAGCATCGGTTGACGACTGCTATCCGTCCTCAGATAAATGCATTTTTGGAAGGATTCAGTGAATTGATTCCGCGAGAGCTGATCTCTATTTTTCATGACAAGGAACTTGAGTTGTTAATTAGCGGTCTTCCAGACATCGATCGTATGTTTCACTATTTCCTTTATTTGTTAATTCATGTGGTAATTCTATCTTAGATAGTTATTGTCAGTATCAAGATAGAGTTGCTTCTTACAATTAATTTGCCCCTTGGTTTGCAGTTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGGTTCACCTGTTATTC</genome_strand>
        <mrna_strand>CAGTTACTGTCCAGAGTAATTTTTGACAAGGGAGCACTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTTTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTT...................................................................................GTTGGCAAGGCACTATTTGATGGTCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAG..........................................................................AATGACATAAGTGATATTTTAGACCTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAG............................................................................GTGACTGACTATGAACTAATCCCGGGTGGACGAAATATCAGAGTCACTGAGGAAAATAAGCAACAGTATGTTGACTTGGTTGCTGAGCATCGGTTGACGACTGCTATCCGTCCTCAGATAAATGCATTTTTGGAAGGATTCAGTGAATTGATTCCGCGAGAGCTGATCTCTATTTTTCATGACAAGGAACTTGAGTTGTTAATTAGCGGTCTTCCAGACATCGATC....................................................................................................................TTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGCTTCACCTGTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473766" ref_strand="+" ref_description="SGN-E473766 [cSTB-33-B4]">
      <seq>cagttactgtccagagtaatttttgacaagggagcactattgtttactacagttggcaatgaagcaacatttcagccaaatcccaactctgtttaccaaactgagcacctctcatacttcaaatttgttgggcgagttgttggcaaggcactatttgatggtcaacttcttgatgttcattttacacggtccttctacaagcacatacttggtgctaaagtgacatatcatgatatcgaagctattgatcctgactacttcaaaaatttgaaatggctgcttgagaatgacataagtgatattttagaccttacattcagtattgatgctgatgaagagaagttgatactttatgaacgcaatgaggtgactgactatgaactaatcccgggtggacgaaatatcagagtcactgaggaaaataagcaacagtatgttgacttggttgctgagcatcggttgacgactgctatccgtcctcagataaatgcatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="36154" stop="37484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36454" g_stop="36591" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36592" i_stop="36674" i_length="83">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36675" g_stop="36821" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="285" r_length="147" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36822" i_stop="36895" i_length="74">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36896" g_stop="36976" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="366" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36977" i_stop="37052" i_length="76">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37053" g_stop="37184" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="498" r_length="132" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E473766" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36454" e_stop="36591"/>
          <exon e_start="36675" e_stop="36821"/>
          <exon e_start="36896" e_stop="36976"/>
          <exon e_start="37053" e_stop="37184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTTGTGAGTATTTTCCTTCTTGGTTCTGTTTGCTTGACTCATTTATTTTTAAACAATATTTAATGTGCTTTATGTAAATATCCCAGGTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAGGTGCAGTGTTTTTTCTGTTCTCTGTGATTATATGTCCAAAAATTTGCTCTGCTCACGTTTCTTGTTTTGTGTAGAATGACATCAGTGATATTTTAGACCTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAGGTATGAGTTCTTCTGCGGCAATTGAATTTTAAGCATTGTTGTTAGAAAGGCTCTGATTGCAATTTGTGTAATGCAGGTGACTGATTATGAACTAATCCCAGGTGGACGAAATATCAGAGTCACGGAGGAAAATAAGCAACAGTATGTCGACTTGGTTGCTGAGCATCGGTTGACGACTGCTATCCGTCCTCAGATAAATGCATTTTTG</genome_strand>
        <mrna_strand>CAGTTACTGTCCAGAGTAATTTTTGACAAGGGAGCACTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTTTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTT...................................................................................GTTGGCAAGGCACTATTTGATGGTCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAG..........................................................................AATGACATAAGTGATATTTTAGACCTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAG............................................................................GTGACTGACTATGAACTAATCCCGGGTGGACGAAATATCAGAGTCACTGAGGAAAATAAGCAACAGTATGTTGACTTGGTTGCTGAGCATCGGTTGACGACTGCTATCCGTCCTCAGATAAATGCATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248334" ref_strand="+" ref_description="SGN-E248334 [cLEG-1-L1]">
      <seq>tccagagtaatttttgacaagggagcgctattgtttactacagttggcaatgaagcaacatttcagccaaatcccaactctgtgtaccaaactgagcacctctcatacttcaaatttgttgggcgagttgttgggaaggcactatttgacggccaacttcttgatgttcattttacacggtccttctacaagcacatacttgatgctaaagtgacatatcatgatatcgaagctattgatcctgactacttcaaaaatttgaaatggctgcttgagaatgacatcagtgatattttagaccttacattcagtattgatgctgatgaagagaagttgatactttatgaacgcaatgaggtgactgattatgaactaatcccaggtggacgaaatatcagagtcacggaggaaaataagcaacagtatgtcaacttggttgctgagcatcggttgacgactgctatccgtcctcagataaatgcatttttggaaggattcagtgaattgatttcgcgagagctgatctctatttttcatgacaaggaacttgagttgttaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="36163" stop="37556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36463" g_stop="36591" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36592" i_stop="36674" i_length="83">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36675" g_stop="36821" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="276" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36822" i_stop="36895" i_length="74">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36896" g_stop="36976" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="357" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36977" i_stop="37052" i_length="76">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37053" g_stop="37256" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="561" r_length="204" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E248334" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36463" e_stop="36591"/>
          <exon e_start="36675" e_stop="36821"/>
          <exon e_start="36896" e_stop="36976"/>
          <exon e_start="37053" e_stop="37256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTTGTGAGTATTTTCCTTCTTGGTTCTGTTTGCTTGACTCATTTATTTTTAAACAATATTTAATGTGCTTTATGTAAATATCCCAGGTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAGGTGCAGTGTTTTTTCTGTTCTCTGTGATTATATGTCCAAAAATTTGCTCTGCTCACGTTTCTTGTTTTGTGTAGAATGACATCAGTGATATTTTAGACCTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAGGTATGAGTTCTTCTGCGGCAATTGAATTTTAAGCATTGTTGTTAGAAAGGCTCTGATTGCAATTTGTGTAATGCAGGTGACTGATTATGAACTAATCCCAGGTGGACGAAATATCAGAGTCACGGAGGAAAATAAGCAACAGTATGTCGACTTGGTTGCTGAGCATCGGTTGACGACTGCTATCCGTCCTCAGATAAATGCATTTTTGGAAGGATTCAGTGAATTGATTCCGCGAGAGCTGATCTCTATTTTTCATGACAAGGAACTTGAGTTGTTAATT</genome_strand>
        <mrna_strand>TCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTT...................................................................................GTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGATGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAG..........................................................................AATGACATCAGTGATATTTTAGACCTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAG............................................................................GTGACTGATTATGAACTAATCCCAGGTGGACGAAATATCAGAGTCACGGAGGAAAATAAGCAACAGTATGTCAACTTGGTTGCTGAGCATCGGTTGACGACTGCTATCCGTCCTCAGATAAATGCATTTTTGGAAGGATTCAGTGAATTGATTTCGCGAGAGCTGATCTCTATTTTTCATGACAAGGAACTTGAGTTGTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610672" ref_strand="+" ref_description="SGN-E610672 [57838]">
      <seq>caacatttcagccaaatcccaactctgtttaccaaactgagcacctctcatacttcaaatttgttgggcgagttgttggcaaggcactatttgatggtcaacttcttgatgttcattttacacggtccttctacaagcacatacttggtgctaaagtgacatatcatgatatcgaagctattgatcctgactacttcaaaaatttgaaatggctgcttgagaatgacataagtgatattttagaccttacattcagtattgatgctgatgaagagaagttgatactttatgaacgcaatgaggtgactgactatgaactaatcccgggtggacgaaatatcagagtcactgaggaaaataagcaacagtatgttgacttggttgctgagcatcggttgacaactgctatccgtcctcagataaatgcatttttggaaggattcagtgaattgattccgcgagagctgatctctatttttcatgacaaggaacttgagttgttaattagcggtcttccagacatcgatcttgatgacttaagggcaaatacagaatattctggatacagcccagcttcacctgttattcagtggtttcgggaagttgttcaagcttttagcaaggaagacaaagctcgccttcttcaatttgtcactggaacctcaaaggtgccattggaagggttagtgcactgcaaggaatttcaggttcccagaaatttcagatccacaagcttattgccagtgctgatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="36218" stop="38004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36518" g_stop="36591" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36592" i_stop="36674" i_length="83">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36675" g_stop="36821" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="221" r_length="147" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36822" i_stop="36895" i_length="74">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36896" g_stop="36976" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="302" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36977" i_stop="37052" i_length="76">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37053" g_stop="37278" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="528" r_length="226" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37279" i_stop="37394" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37395" g_stop="37534" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="668" r_length="140" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37535" i_stop="37617" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37618" g_stop="37704" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="754" r_length="86" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E610672" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36518" e_stop="36591"/>
          <exon e_start="36675" e_stop="36821"/>
          <exon e_start="36896" e_stop="36976"/>
          <exon e_start="37053" e_stop="37278"/>
          <exon e_start="37395" e_stop="37534"/>
          <exon e_start="37618" e_stop="37704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTTGTGAGTATTTTCCTTCTTGGTTCTGTTTGCTTGACTCATTTATTTTTAAACAATATTTAATGTGCTTTATGTAAATATCCCAGGTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAGGTGCAGTGTTTTTTCTGTTCTCTGTGATTATATGTCCAAAAATTTGCTCTGCTCACGTTTCTTGTTTTGTGTAGAATGACATCAGTGATATTTTAGACCTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAGGTATGAGTTCTTCTGCGGCAATTGAATTTTAAGCATTGTTGTTAGAAAGGCTCTGATTGCAATTTGTGTAATGCAGGTGACTGATTATGAACTAATCCCAGGTGGACGAAATATCAGAGTCACGGAGGAAAATAAGCAACAGTATGTCGACTTGGTTGCTGAGCATCGGTTGACGACTGCTATCCGTCCTCAGATAAATGCATTTTTGGAAGGATTCAGTGAATTGATTCCGCGAGAGCTGATCTCTATTTTTCATGACAAGGAACTTGAGTTGTTAATTAGCGGTCTTCCAGACATCGATCGTATGTTTCACTATTTCCTTTATTTGTTAATTCATGTGGTAATTCTATCTTAGATAGTTATTGTCAGTATCAAGATAGAGTTGCTTCTTACAATTAATTTGCCCCTTGGTTTGCAGTTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGGTTCACCTGTTATTCAGTGGTTTTGGGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAGGTAGTTTGTTGCTTTCATTTGATTATAGTTGCATGTTAAATGTCTCCTGCAATCATCAAACAAATCTGTGTGTAATTCTCCAGGTGCCATTGGAAGGGTTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTA-TGGCAGTGCTGATCAC</genome_strand>
        <mrna_strand>CAACATTTCAGCCAAATCCCAACTCTGTTTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTT...................................................................................GTTGGCAAGGCACTATTTGATGGTCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAG..........................................................................AATGACATAAGTGATATTTTAGACCTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAG............................................................................GTGACTGACTATGAACTAATCCCGGGTGGACGAAATATCAGAGTCACTGAGGAAAATAAGCAACAGTATGTTGACTTGGTTGCTGAGCATCGGTTGACAACTGCTATCCGTCCTCAGATAAATGCATTTTTGGAAGGATTCAGTGAATTGATTCCGCGAGAGCTGATCTCTATTTTTCATGACAAGGAACTTGAGTTGTTAATTAGCGGTCTTCCAGACATCGATC....................................................................................................................TTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGCTTCACCTGTTATTCAGTGGTTTCGGGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAG...................................................................................GTGCCATTGGAAGGG-TTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCAC-AAGCTTATTGCCAGTGCTGATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611960" ref_strand="+" ref_description="SGN-E611960 [61717]">
      <seq>cccaactctgtttaccaaactgagcacctctcatacttcaaatttgttgggcgagttgttggcaaggcaggatttgatggtcaacttcttgatgttcattttacacggtccttctacaagcacatacttggtgctaaagtgacatatcatgatatcgaagctattgatcctgactacttcaaaaatttgaaatggctgcttgagaatgacataagtgatattttagaccttacattcagtattgatgctgatgaagagaagttgatactttatgaacgcaatgaggtgactgactatgaactaatcccgggtggacgaaatatcagagtcactgaggaaaataagcaacagtatgttgacttggttgctgagcatcggttgacaactgctatccgtcctcagataaatgcatttttggcaaggattcagtgaattgattcccgcgagagctgatctctattttttcatgacaagggaacttgagttgttaattagcggtctttccagacatcgatctttgatgactttaaagggcaaataccggaatattctgcgatacaagcccaggtttcacctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="36235" stop="37585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36535" g_stop="36591" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36592" i_stop="36674" i_length="83">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36675" g_stop="36821" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="204" r_length="147" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36822" i_stop="36895" i_length="74">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36896" g_stop="36976" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="285" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36977" i_stop="37052" i_length="76">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37053" g_stop="37278" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="516" r_length="231" r_score="0.934"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37279" i_stop="37394" i_length="116">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.983" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37395" g_stop="37450" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="579" r_length="63" r_score="0.732"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E611960" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36535" e_stop="36591"/>
          <exon e_start="36675" e_stop="36821"/>
          <exon e_start="36896" e_stop="36976"/>
          <exon e_start="37053" e_stop="37278"/>
          <exon e_start="37395" e_stop="37450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTTGTGAGTATTTTCCTTCTTGGTTCTGTTTGCTTGACTCATTTATTTTTAAACAATATTTAATGTGCTTTATGTAAATATCCCAGGTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAGGTGCAGTGTTTTTTCTGTTCTCTGTGATTATATGTCCAAAAATTTGCTCTGCTCACGTTTCTTGTTTTGTGTAGAATGACATCAGTGATATTTTAGACCTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAGGTATGAGTTCTTCTGCGGCAATTGAATTTTAAGCATTGTTGTTAGAAAGGCTCTGATTGCAATTTGTGTAATGCAGGTGACTGATTATGAACTAATCCCAGGTGGACGAAATATCAGAGTCACGGAGGAAAATAAGCAACAGTATGTCGACTTGGTTGCTGAGCATCGGTTGACGACTGCTATCCGTCCTCAGATAAATGCATTTTTGG-AAGGATTCAGTGAATTGATT-CCGCGAGAGCTGATCTCTA-TTTTTCATGACAA-GGAACTTGAGTTGTTAATTAGCGGTC-TTCCAGACATCGATCGTATGTTTCACTATTTCCTTTATTTGTTAATTCATGTGGTAATTCTATCTTAGATAGTTATTGTCAGTATCAAGATAGAGTTGCTTCTTACAATTAATTTGCCCCTTGGTTTGCAG-TTGATGAC-TT-AAGGGCAAATA-CAGAATATTCTG-GATAC-AGCCCAGG-TTCACCTGTT</genome_strand>
        <mrna_strand>CCCAACTCTGTTTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTT...................................................................................GTTGGCAAGGCAGGATTTGATGGTCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAG..........................................................................AATGACATAAGTGATATTTTAGACCTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAG............................................................................GTGACTGACTATGAACTAATCCCGGGTGGACGAAATATCAGAGTCACTGAGGAAAATAAGCAACAGTATGTTGACTTGGTTGCTGAGCATCGGTTGACAACTGCTATCCGTCCTCAGATAAATGCATTTTTGGCAAGGATTCAGTGAATTGATTCCCGCGAGAGCTGATCTCTATTTTTTCATGACAAGGGAACTTGAGTTGTTAATTAGCGGTCTTTCCAGACATCGATC....................................................................................................................TTTGATGACTTTAAAGGGCAAATACCGGAATATTCTGCGATACAAGCCCAGGTTTCACCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600248" ref_strand="-" ref_description="SGN-E600248 [53254]">
      <seq>accgggcccccctttacattcagtattgatgctgatgaagagaagttgatactttatgaacgcaatgaggtgactgactatgaactaatcccgggtggacgaaatatcagagtcactgaggaaaataagcaacagtatgttgacttggttgctgagcatcggttgacaactgctatccgtcctcagataaatgcatttttggaaggattcagtgaattgattccgcgagagctgatctctatttttcatgacaaggaacttgagttgttaattagcggtcttccagacatcgatcttgatgacttaagggcaaatacagaatattctggatacagcccagcttcacctgttattcagtggttttgggaagttgttcaagcttttagcaaggaagacaaagctcgccttcttcaatttgtcactggaacctcaaaggtgccattggaagggtttagtgcactgcaaggaatttcaggttcccagaaatttcagatccacaaagcttatggcagtgctgatcacttgccttcagcacatacatgttttaaccagttggatctaccagagtacccctctaaagagcatctagaggagagactactgcttgccattcatgaagccaacgaaggatttggatttggttaaaacactaatgggttttctgaattagattctgtagataacttccatgttaaaaaagagattttttatttatttatacaggagaacagtctaagggcattttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="36619" stop="38675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36909" g_stop="36976" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.838"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36977" i_stop="37052" i_length="76">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37053" g_stop="37278" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="295" r_length="226" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37279" i_stop="37394" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37395" g_stop="37534" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="435" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37535" i_stop="37617" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37618" g_stop="37724" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="542" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37725" i_stop="38168" i_length="444">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38169" g_stop="38375" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="748" r_length="206" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E600248" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600248" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36909" e_stop="36976"/>
          <exon e_start="37053" e_stop="37278"/>
          <exon e_start="37395" e_stop="37534"/>
          <exon e_start="37618" e_stop="37724"/>
          <exon e_start="38169" e_stop="38375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTAGACC-TTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAGGTATGAGTTCTTCTGCGGCAATTGAATTTTAAGCATTGTTGTTAGAAAGGCTCTGATTGCAATTTGTGTAATGCAGGTGACTGATTATGAACTAATCCCAGGTGGACGAAATATCAGAGTCACGGAGGAAAATAAGCAACAGTATGTCGACTTGGTTGCTGAGCATCGGTTGACGACTGCTATCCGTCCTCAGATAAATGCATTTTTGGAAGGATTCAGTGAATTGATTCCGCGAGAGCTGATCTCTATTTTTCATGACAAGGAACTTGAGTTGTTAATTAGCGGTCTTCCAGACATCGATCGTATGTTTCACTATTTCCTTTATTTGTTAATTCATGTGGTAATTCTATCTTAGATAGTTATTGTCAGTATCAAGATAGAGTTGCTTCTTACAATTAATTTGCCCCTTGGTTTGCAGTTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGGTTCACCTGTTATTCAGTGGTTTTGGGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAGGTAGTTTGTTGCTTTCATTTGATTATAGTTGCATGTTAAATGTCTCCTGCAATCATCAAACAAATCTGTGTGTAATTCTCCAGGTGCCATTGGAAGGGTTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTATGGCAGTGCTGATCACCTGCCTTCAGCACATACATGGTAATTATTTGATCATCTGAAACTAAATTATGATTGCCCTTCTTGATGCTGAAGCTTTGTGCCAGTAAAAGAACCATGTTGCTTCTCTTCTAGTTACTCAACCTTCTTATGTTTATGTAGCCATTTTAAATTACCTGTATTGCTGAAGATTCCAGTAGAAGTTCATGTTGCGTCCTGTGTCCAAATTGTCTTCTTTTGCTTTCTTCTGATGTGCATCTACTCAATTGAATTGACGTCTCTTCTCTATGAGATGGGAATCTTATATGAATATTTCAATTAAATGTCGACTATAAGTATTTATCCTAATCCCAATTAGACTTCAACTACTAGCAGCAAATAGAAACTTCTCCCTTTGAGTTCGGAGGGAGTATTCGGAATTCTACTTGTATGTATTCTTTACTTATATACTGTGAACACTCCTTAACTATTATTTGCTGGTTGCAGTTTCAACCAGTTGGATCTACCAGAGTATCCCTCCAAAGAGCATCTAGAGGAGAGACTACTGCTTGCCATTCATGAAGCTAACGAAGGATTTGGATTTGGTTAAAACAACAATGGGTGGTCTGAATTAGATTCTGTAGATAATTTCCATGTTAAAAAAGAGAGTTTTTTTTTTATATATACAGGAGAACAGTCTAAGGGCATTTTAAG</genome_strand>
        <mrna_strand>ACCGGGCCCCCCTTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAG............................................................................GTGACTGACTATGAACTAATCCCGGGTGGACGAAATATCAGAGTCACTGAGGAAAATAAGCAACAGTATGTTGACTTGGTTGCTGAGCATCGGTTGACAACTGCTATCCGTCCTCAGATAAATGCATTTTTGGAAGGATTCAGTGAATTGATTCCGCGAGAGCTGATCTCTATTTTTCATGACAAGGAACTTGAGTTGTTAATTAGCGGTCTTCCAGACATCGATC....................................................................................................................TTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGCTTCACCTGTTATTCAGTGGTTTTGGGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAG...................................................................................GTGCCATTGGAAGGGTTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTATGGCAGTGCTGATCACTTGCCTTCAGCACATACATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAACCAGTTGGATCTACCAGAGTACCCCTCTAAAGAGCATCTAGAGGAGAGACTACTGCTTGCCATTCATGAAGCCAACGAAGGATTTGGATTTGGTTAAAACACTAATGGGTTTTCTGAATTAGATTCTGTAGATAACTTCCATGTTAAAAAAGAGA-TTTTTTATTTATTTATACAGGAGAACAGTCTAAGGGCATTTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349181" ref_strand="+" ref_description="SGN-E349181 [cTOS-2-C24]">
      <seq>tgctatccgtcctcagataaatgcatttttggaaggattcagtgaattgattccgcgagagctgatctctatttttcatgacaaggaacttgagttgttaattagcggtcttccagacatcgatcttgatgacttaagggcaaatacagaatattctggatacagcccaggttcacctgttattcagtggttttgggaagttgttcaagcttttagcaaggaagacaaagctcgccttcttcaatttgtcactggaacctcaaaggtgccattggaagggtttagtgcactgcaaggaatttcaggttcccagaaatttcagatccacaaagcttatggcagtgctgatcacctgccttcagcacatacatgtttcaaccagttggatctaccagagtatccctccaaagagcatctagaggagagactactgcttgccattcatgaagctaacgaaggatttggatttggttaaaacaacaatgggtggtctgaattagattctgtagataatttccatgttaaaaaagagagttttttttttatatatacaggagaacagtctaagggcattttaagtctgtgagatacctgtctataatgctgtacagtctatttgctatgcgaaatgatcctggcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="36854" stop="38738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37154" g_stop="37278" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37279" i_stop="37394" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37395" g_stop="37534" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="265" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37535" i_stop="37617" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37618" g_stop="37724" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="372" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37725" i_stop="38168" i_length="444">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38169" g_stop="38438" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="642" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E349181" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37154" e_stop="37278"/>
          <exon e_start="37395" e_stop="37534"/>
          <exon e_start="37618" e_stop="37724"/>
          <exon e_start="38169" e_stop="38438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTATCCGTCCTCAGATAAATGCATTTTTGGAAGGATTCAGTGAATTGATTCCGCGAGAGCTGATCTCTATTTTTCATGACAAGGAACTTGAGTTGTTAATTAGCGGTCTTCCAGACATCGATCGTATGTTTCACTATTTCCTTTATTTGTTAATTCATGTGGTAATTCTATCTTAGATAGTTATTGTCAGTATCAAGATAGAGTTGCTTCTTACAATTAATTTGCCCCTTGGTTTGCAGTTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGGTTCACCTGTTATTCAGTGGTTTTGGGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAGGTAGTTTGTTGCTTTCATTTGATTATAGTTGCATGTTAAATGTCTCCTGCAATCATCAAACAAATCTGTGTGTAATTCTCCAGGTGCCATTGGAAGGGTTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTATGGCAGTGCTGATCACCTGCCTTCAGCACATACATGGTAATTATTTGATCATCTGAAACTAAATTATGATTGCCCTTCTTGATGCTGAAGCTTTGTGCCAGTAAAAGAACCATGTTGCTTCTCTTCTAGTTACTCAACCTTCTTATGTTTATGTAGCCATTTTAAATTACCTGTATTGCTGAAGATTCCAGTAGAAGTTCATGTTGCGTCCTGTGTCCAAATTGTCTTCTTTTGCTTTCTTCTGATGTGCATCTACTCAATTGAATTGACGTCTCTTCTCTATGAGATGGGAATCTTATATGAATATTTCAATTAAATGTCGACTATAAGTATTTATCCTAATCCCAATTAGACTTCAACTACTAGCAGCAAATAGAAACTTCTCCCTTTGAGTTCGGAGGGAGTATTCGGAATTCTACTTGTATGTATTCTTTACTTATATACTGTGAACACTCCTTAACTATTATTTGCTGGTTGCAGTTTCAACCAGTTGGATCTACCAGAGTATCCCTCCAAAGAGCATCTAGAGGAGAGACTACTGCTTGCCATTCATGAAGCTAACGAAGGATTTGGATTTGGTTAAAACAACAATGGGTGGTCTGAATTAGATTCTGTAGATAATTTCCATGTTAAAAAAGAGAGTTTTTTTTTTATATATACAGGAGAACAGTCTAAGGGCATTTTAAGTCTGTGAGATACCTGTCTATAATGCTGTACAGTCTATTTGCTATGCGAAATGATCCTGGCAGT</genome_strand>
        <mrna_strand>TGCTATCCGTCCTCAGATAAATGCATTTTTGGAAGGATTCAGTGAATTGATTCCGCGAGAGCTGATCTCTATTTTTCATGACAAGGAACTTGAGTTGTTAATTAGCGGTCTTCCAGACATCGATC....................................................................................................................TTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGGTTCACCTGTTATTCAGTGGTTTTGGGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAG...................................................................................GTGCCATTGGAAGGGTTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTATGGCAGTGCTGATCACCTGCCTTCAGCACATACATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAACCAGTTGGATCTACCAGAGTATCCCTCCAAAGAGCATCTAGAGGAGAGACTACTGCTTGCCATTCATGAAGCTAACGAAGGATTTGGATTTGGTTAAAACAACAATGGGTGGTCTGAATTAGATTCTGTAGATAATTTCCATGTTAAAAAAGAGAGTTTTTTTTTTATATATACAGGAGAACAGTCTAAGGGCATTTTAAGTCTGTGAGATACCTGTCTATAATGCTGTACAGTCTATTTGCTATGCGAAATGATCCTGGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559710" ref_strand="+" ref_description="SGN-E559710 [19250]">
      <seq>cctcaataatgcatttttggaaggatccagtgaattgattcccgcgagagctgatctctatttttcatgacaaggaacttgagttgttaattagcggtccttccagacatcgatcttgatgacttaagggcaaatacagaatattctggatacagcccagcttcacctgttattcagtggttttgggaagttgttcaagcttttagcaaggaagacaaagctcgccttcttcaatttgtcactggaacctcaaaggtgccattggaagggtttagtgcactgcaaggaatttcaggttcccagaaatttcagatccacaaagcttatggcagtgctgatcacttgccttcagcacatacatgttttaaccagttggatctaccagagtacccctctaaagagcatctagaggagagactactgcttgccattcatgaagccaacgaaggatttggatttggttaaaacactaatgggttttctgaattagattctgtagataacttccatgttaaaaaagagattttttatttatttatacaggagaacagtctaagggcattttaacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="36864" stop="38674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37164" g_stop="37278" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37279" i_stop="37394" i_length="116">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37395" g_stop="37534" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="255" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37535" i_stop="37617" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37618" g_stop="37724" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="362" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37725" i_stop="38168" i_length="444">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38169" g_stop="38382" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="575" r_length="213" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E559710" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37164" e_stop="37278"/>
          <exon e_start="37395" e_stop="37534"/>
          <exon e_start="37618" e_stop="37724"/>
          <exon e_start="38169" e_stop="38382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAGATAAATGCATTTTTGGAAGGATTCAGTGAATTGATT-CCGCGAGAGCTGATCTCTATTTTTCATGACAAGGAACTTGAGTTGTTAATTAGCGGT-CTTCCAGACATCGATCGTATGTTTCACTATTTCCTTTATTTGTTAATTCATGTGGTAATTCTATCTTAGATAGTTATTGTCAGTATCAAGATAGAGTTGCTTCTTACAATTAATTTGCCCCTTGGTTTGCAGTTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGGTTCACCTGTTATTCAGTGGTTTTGGGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAGGTAGTTTGTTGCTTTCATTTGATTATAGTTGCATGTTAAATGTCTCCTGCAATCATCAAACAAATCTGTGTGTAATTCTCCAGGTGCCATTGGAAGGGTTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTATGGCAGTGCTGATCACCTGCCTTCAGCACATACATGGTAATTATTTGATCATCTGAAACTAAATTATGATTGCCCTTCTTGATGCTGAAGCTTTGTGCCAGTAAAAGAACCATGTTGCTTCTCTTCTAGTTACTCAACCTTCTTATGTTTATGTAGCCATTTTAAATTACCTGTATTGCTGAAGATTCCAGTAGAAGTTCATGTTGCGTCCTGTGTCCAAATTGTCTTCTTTTGCTTTCTTCTGATGTGCATCTACTCAATTGAATTGACGTCTCTTCTCTATGAGATGGGAATCTTATATGAATATTTCAATTAAATGTCGACTATAAGTATTTATCCTAATCCCAATTAGACTTCAACTACTAGCAGCAAATAGAAACTTCTCCCTTTGAGTTCGGAGGGAGTATTCGGAATTCTACTTGTATGTATTCTTTACTTATATACTGTGAACACTCCTTAACTATTATTTGCTGGTTGCAGTTTCAACCAGTTGGATCTACCAGAGTATCCCTCCAAAGAGCATCTAGAGGAGAGACTACTGCTTGCCATTCATGAAGCTAACGAAGGATTTGGATTTGGTTAAAACAACAATGGGTGGTCTGAATTAGATTCTGTAGATAATTTCCATGTTAAAAAAGAGAGTTTTTTTTTTATATATACAGGAGAACAGTCTAAGGGCATTTTAAGTCTGTGA</genome_strand>
        <mrna_strand>CCTCA-ATAA-TGCATTTTTGGAAGGATCCAGTGAATTGATTCCCGCGAGAGCTGATCTCTATTTTTCATGACAAGGAACTTGAGTTGTTAATTAGCGGTCCTTCCAGACATCGATC....................................................................................................................TTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGCTTCACCTGTTATTCAGTGGTTTTGGGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAG...................................................................................GTGCCATTGGAAGGGTTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTATGGCAGTGCTGATCACTTGCCTTCAGCACATACATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAACCAGTTGGATCTACCAGAGTACCCCTCTAAAGAGCATCTAGAGGAGAGACTACTGCTTGCCATTCATGAAGCCAACGAAGGATTTGGATTTGGTTAAAACACTAATGGGTTTTCTGAATTAGATTCTGTAGATAACTTCCATGTTAAAAAAGAGA-TTTTTTATTTATTTATACAGGAGAACAGTCTAAGGGCATTTTAACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414391" ref_strand="-" ref_description="SGN-E414391 [STM-19-O8]">
      <seq>ttttcatgacaaggaacttgagttgttaattagcggtcttccagacatcgatcttgatgacttaagggcaaatacagaatattctggatacagcccagcttcacctgttattcagtggttttgggaagttgttcaagcttttagcaaggaagacaaagctcgccttcttcaatttgtcactggaacctcaaaggtgccgttggaagggtttagtgcactgcaaggaatttcaggttcccagaaatttcagatccacaaagcttatggcagtgctgatcacttgccttcagcacatacatgttttaaccagttggatctaccagagtacccctctaaagagcatctggaggagagactactgcttgccattcatgaagccaacgaaggatttggatttggttaaaacactaatgggtgtctgaattagattctgtagataacttccatgttaaaaaagagattttttatttatttatacaggagaacagtctaagggcattttaagtctgtgagatacctgtctataatgctgtacagtctatttgctatgccaaatgatcctggggtttctttttttggcaaaaaaaaatttgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="36926" stop="38734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37226" g_stop="37278" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37279" i_stop="37394" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37395" g_stop="37534" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="193" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37535" i_stop="37617" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37618" g_stop="37724" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="300" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37725" i_stop="38168" i_length="444">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38169" g_stop="38453" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="581" r_length="281" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E414391" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414391" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37226" e_stop="37278"/>
          <exon e_start="37395" e_stop="37534"/>
          <exon e_start="37618" e_stop="37724"/>
          <exon e_start="38169" e_stop="38453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATGACAAGGAACTTGAGTTGTTAATTAGCGGTCTTCCAGACATCGATCGTATGTTTCACTATTTCCTTTATTTGTTAATTCATGTGGTAATTCTATCTTAGATAGTTATTGTCAGTATCAAGATAGAGTTGCTTCTTACAATTAATTTGCCCCTTGGTTTGCAGTTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGGTTCACCTGTTATTCAGTGGTTTTGGGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAGGTAGTTTGTTGCTTTCATTTGATTATAGTTGCATGTTAAATGTCTCCTGCAATCATCAAACAAATCTGTGTGTAATTCTCCAGGTGCCATTGGAAGGGTTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTATGGCAGTGCTGATCACCTGCCTTCAGCACATACATGGTAATTATTTGATCATCTGAAACTAAATTATGATTGCCCTTCTTGATGCTGAAGCTTTGTGCCAGTAAAAGAACCATGTTGCTTCTCTTCTAGTTACTCAACCTTCTTATGTTTATGTAGCCATTTTAAATTACCTGTATTGCTGAAGATTCCAGTAGAAGTTCATGTTGCGTCCTGTGTCCAAATTGTCTTCTTTTGCTTTCTTCTGATGTGCATCTACTCAATTGAATTGACGTCTCTTCTCTATGAGATGGGAATCTTATATGAATATTTCAATTAAATGTCGACTATAAGTATTTATCCTAATCCCAATTAGACTTCAACTACTAGCAGCAAATAGAAACTTCTCCCTTTGAGTTCGGAGGGAGTATTCGGAATTCTACTTGTATGTATTCTTTACTTATATACTGTGAACACTCCTTAACTATTATTTGCTGGTTGCAGTTTCAACCAGTTGGATCTACCAGAGTATCCCTCCAAAGAGCATCTAGAGGAGAGACTACTGCTTGCCATTCATGAAGCTAACGAAGGATTTGGATTTGGTTAAAACAACAATGGGTGGTCTGAATTAGATTCTGTAGATAATTTCCATGTTAAAAAAGAGAGTTTTTTTTTTATATATACAGGAGAACAGTCTAAGGGCATTTTAAGTCTGTGAGATACCTGTCTATAATGCTGTACAGTCTATTTGCTATGCGAAATGATCCTGGCAGTTCTTTTTTTTTGGCA</genome_strand>
        <mrna_strand>TTTTCATGACAAGGAACTTGAGTTGTTAATTAGCGGTCTTCCAGACATCGATC....................................................................................................................TTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGCTTCACCTGTTATTCAGTGGTTTTGGGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAG...................................................................................GTGCCGTTGGAAGGGTTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTATGGCAGTGCTGATCACTTGCCTTCAGCACATACATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAACCAGTTGGATCTACCAGAGTACCCCTCTAAAGAGCATCTGGAGGAGAGACTACTGCTTGCCATTCATGAAGCCAACGAAGGATTTGGATTTGGTTAAAACACTAATGGGT-GTCTGAATTAGATTCTGTAGATAACTTCCATGTTAAAAAAGAGA-TTTTTTATTTATTTATACAGGAGAACAGTCTAAGGGCATTTTAAGTCTGTGAGATACCTGTCTATAATGCTGTACAGTCTATTTGCTATGCCAAATGATCCTGG-GGTT-TCTTTTTTTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425118" ref_strand="-" ref_description="SGN-E425118 [STM-44-H15]">
      <seq>ttttcatgacaaggaacttgagttgttaattagcggtcttccagacatcgatcttgatgacttaagggcaaatacagaatattctggatacagcccagcttcacctgttattcagtggttttgggaagttgttcaagcttttagcaaggaagacaaagctcgccttcttcaatttgtcactggaacctcaaaggtgccgttggaagggtttagtgcactgcaaggaatttcaggttcccagaaatttcagatccacaaagcttatggcagtgctgatcacttgccttcagcacatacatgttttaaccagttggatctaccagagtacccctctaaagagcatctggaggagagactactgcttgccattcatgaagccaacgaaggatttggatttggttaaaacactaatgggtgtctgaattagattctgtagataacttccatgttaaaaaagagattttttatttatttatacaggagaacagtctaagggcattttaagtctgtgagatacctgtctataatgctgtacagtctatttgctatgccaaatgatcctggcagttcgatgtaggcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="36926" stop="38745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37226" g_stop="37278" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37279" i_stop="37394" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37395" g_stop="37534" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="193" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37535" i_stop="37617" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37618" g_stop="37724" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="300" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37725" i_stop="38168" i_length="444">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38169" g_stop="38436" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="566" r_length="266" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E425118" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425118" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37226" e_stop="37278"/>
          <exon e_start="37395" e_stop="37534"/>
          <exon e_start="37618" e_stop="37724"/>
          <exon e_start="38169" e_stop="38436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATGACAAGGAACTTGAGTTGTTAATTAGCGGTCTTCCAGACATCGATCGTATGTTTCACTATTTCCTTTATTTGTTAATTCATGTGGTAATTCTATCTTAGATAGTTATTGTCAGTATCAAGATAGAGTTGCTTCTTACAATTAATTTGCCCCTTGGTTTGCAGTTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGGTTCACCTGTTATTCAGTGGTTTTGGGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAGGTAGTTTGTTGCTTTCATTTGATTATAGTTGCATGTTAAATGTCTCCTGCAATCATCAAACAAATCTGTGTGTAATTCTCCAGGTGCCATTGGAAGGGTTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTATGGCAGTGCTGATCACCTGCCTTCAGCACATACATGGTAATTATTTGATCATCTGAAACTAAATTATGATTGCCCTTCTTGATGCTGAAGCTTTGTGCCAGTAAAAGAACCATGTTGCTTCTCTTCTAGTTACTCAACCTTCTTATGTTTATGTAGCCATTTTAAATTACCTGTATTGCTGAAGATTCCAGTAGAAGTTCATGTTGCGTCCTGTGTCCAAATTGTCTTCTTTTGCTTTCTTCTGATGTGCATCTACTCAATTGAATTGACGTCTCTTCTCTATGAGATGGGAATCTTATATGAATATTTCAATTAAATGTCGACTATAAGTATTTATCCTAATCCCAATTAGACTTCAACTACTAGCAGCAAATAGAAACTTCTCCCTTTGAGTTCGGAGGGAGTATTCGGAATTCTACTTGTATGTATTCTTTACTTATATACTGTGAACACTCCTTAACTATTATTTGCTGGTTGCAGTTTCAACCAGTTGGATCTACCAGAGTATCCCTCCAAAGAGCATCTAGAGGAGAGACTACTGCTTGCCATTCATGAAGCTAACGAAGGATTTGGATTTGGTTAAAACAACAATGGGTGGTCTGAATTAGATTCTGTAGATAATTTCCATGTTAAAAAAGAGAGTTTTTTTTTTATATATACAGGAGAACAGTCTAAGGGCATTTTAAGTCTGTGAGATACCTGTCTATAATGCTGTACAGTCTATTTGCTATGCGAAATGATCCTGGCA</genome_strand>
        <mrna_strand>TTTTCATGACAAGGAACTTGAGTTGTTAATTAGCGGTCTTCCAGACATCGATC....................................................................................................................TTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGCTTCACCTGTTATTCAGTGGTTTTGGGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAG...................................................................................GTGCCGTTGGAAGGGTTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTATGGCAGTGCTGATCACTTGCCTTCAGCACATACATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAACCAGTTGGATCTACCAGAGTACCCCTCTAAAGAGCATCTGGAGGAGAGACTACTGCTTGCCATTCATGAAGCCAACGAAGGATTTGGATTTGGTTAAAACACTAATGGGT-GTCTGAATTAGATTCTGTAGATAACTTCCATGTTAAAAAAGAGA-TTTTTTATTTATTTATACAGGAGAACAGTCTAAGGGCATTTTAAGTCTGTGAGATACCTGTCTATAATGCTGTACAGTCTATTTGCTATGCCAAATGATCCTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241742" ref_strand="+" ref_description="SGN-E241742 [cLEE-10-G13]">
      <seq>agacatctattttgatgacttaagggcaaatacagaatattctggatacagcccaggttcacctgttattcagtggttttgggaagttgttcaagcttttagcaaggaagacaaagctcgccttcttcaatttgtcactggaacctcaaaggtgccattggaagggtttagtgcactgcaaggaatttcaggttcccagaaatttcagatccacaaagcttatggcagtgctgatcacctgccttcagcacatacatgtttcaaccagttggatctaccagagtatccctccaaagagcatctagaggagagactactgcttgccattcatgaagctaacgaaggatttggatttggttaaaacaacaatgggtggtctgaattagattctgtagataatttccatgttaaaaaagagagtttttttttatatatacaggagaacagtctaagggcattttaagtctgtgagatacctgtctataatgctgtacagtctatttgctatgcgaaatgatcctggcnnannaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="37095" stop="45529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37268" g_stop="37278" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.818"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37279" i_stop="37394" i_length="116">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37395" g_stop="37534" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="151" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37535" i_stop="37617" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37618" g_stop="37724" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="258" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37725" i_stop="38168" i_length="444">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38169" g_stop="38436" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="525" r_length="267" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38437" i_stop="39753" i_length="1317">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39754" g_stop="39789" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="561" r_length="36" r_score="0.694"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E241742" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37268" e_stop="37278"/>
          <exon e_start="37395" e_stop="37534"/>
          <exon e_start="37618" e_stop="37724"/>
          <exon e_start="38169" e_stop="38436"/>
          <exon e_start="39754" e_stop="39789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATCGATCGTATGTTTCACTATTTCCTTTATTTGTTAATTCATGTGGTAATTCTATCTTAGATAGTTATTGTCAGTATCAAGATAGAGTTGCTTCTTACAATTAATTTGCCCCTTGGTTTGCAGTTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGGTTCACCTGTTATTCAGTGGTTTTGGGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAGGTAGTTTGTTGCTTTCATTTGATTATAGTTGCATGTTAAATGTCTCCTGCAATCATCAAACAAATCTGTGTGTAATTCTCCAGGTGCCATTGGAAGGGTTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTATGGCAGTGCTGATCACCTGCCTTCAGCACATACATGGTAATTATTTGATCATCTGAAACTAAATTATGATTGCCCTTCTTGATGCTGAAGCTTTGTGCCAGTAAAAGAACCATGTTGCTTCTCTTCTAGTTACTCAACCTTCTTATGTTTATGTAGCCATTTTAAATTACCTGTATTGCTGAAGATTCCAGTAGAAGTTCATGTTGCGTCCTGTGTCCAAATTGTCTTCTTTTGCTTTCTTCTGATGTGCATCTACTCAATTGAATTGACGTCTCTTCTCTATGAGATGGGAATCTTATATGAATATTTCAATTAAATGTCGACTATAAGTATTTATCCTAATCCCAATTAGACTTCAACTACTAGCAGCAAATAGAAACTTCTCCCTTTGAGTTCGGAGGGAGTATTCGGAATTCTACTTGTATGTATTCTTTACTTATATACTGTGAACACTCCTTAACTATTATTTGCTGGTTGCAGTTTCAACCAGTTGGATCTACCAGAGTATCCCTCCAAAGAGCATCTAGAGGAGAGACTACTGCTTGCCATTCATGAAGCTAACGAAGGATTTGGATTTGGTTAAAACAACAATGGGTGGTCTGAATTAGATTCTGTAGATAATTTCCATGTTAAAAAAGAGAGTTTTTTTTTTATATATACAGGAGAACAGTCTAAGGGCATTTTAAGTCTGTGAGATACCTGTCTATAATGCTGTACAGTCTATTTGCTATGCGAAATGATCCTGGCAGTTCTTTTTTTTTGGCAGTCGTTTGTTTATCTTCTCTTTTCCCTTTGTTTCTCTACTTTCTGCTTGTCTTTGTCACTATTGTTGCTTGTAGGTGTTGCAAATTTATCACTCCCATGCTCTCTATTCTGAATACTGAGAGTAGACCATTCCCTTTTCTATGTGATGTTCTCATTATTGCCGTTCATCAAGTACCTAAAAGTTCATATTGCGACACAGAACAAAGACCATCTGATATATGTAAATAATGGTGTGACATTTTCACAAGGACGTGTAAATTACACTTTCCTGTATACTTGCACGACTATGGCGCTATGATAAAATACAAAGTGGGTGTGGAACTTTTGGCATAATATGGTGATATCACTACGTTTATTAGTCTAAGAGAATAACAACTAAAGCCCCAAATAAAGGACTAGAGAGAATTTGATCTTGAGGAGGGCAAAGGGGAAAACAAGAAGTTTGGCACTCCAACTTTTGTTGCTTATACTTGGGGTAGTTGGGTTCTGCCATAGCCTAACCTCATACCCAAAAGTTTGAAGTTAGAAGAGCCTGAACTTTATAATTTTTGGACTGATGGTAGGCTCTCTCTATCTGAATAAGGCATAGAATTAGAAAAAGCCGTTTTTAATGAGTTAGGTGTCTAAATCAGAACTCGTGAAGTATTGGAGCTAGAAACTCAAATTTGTGCAAGTATGAATGTACTATTCATGAAATGTAACCAAATATAAATGAAGGTTGTCAATGATGTCTTCAATTAAAATAGTTAATAATTAAATAACTTTTTGAGATAAAAAATAATGTAATAATATAAATGCAATAAATTTAACGACAAATGACTATTAATAAAACGAAAAATTAACCATGGTACAAGTGGGAAATTTTTCTACAATATATGCTTCTTCTCTTTTCCCTCTCTTGTGTAATAGAAAATAAAAAACAAAATGCTTTGAAGAAAATTTATGTTGTACCTTAAAGTTGTTACACCTACCTGAATGCAATAATTGCTCTTCAGGAATTTTCATTTTCGTCGACTTGAGTTTGATATAATATATTTTTTTTCAAGTTTCATACGCAATTAATAAAAAAAGCTTATTTCAAATGAATTCAATGCGAATTAAAATTTGTCGACTTTTAGTGGGAAACCAAAGAGAAAAGGCAGTATGAATTTATTTTCTATTTTTGTTTTCATTTTTCTCCTATGGATAATTGACCAAACATTGACTCCTTAGCCTGAAAGTCTCTTCGTTTCCCTTTATAATTCCCACTGTCATGTTTATTTCCCTTTGCTTTCCCAAAACCAATCAAATAAGACATGCATGTAAAAATAAAATAAAAATAAAAGTCCAAAAAAAA</genome_strand>
        <mrna_strand>AGACATCTATT....................................................................................................................TTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGGTTCACCTGTTATTCAGTGGTTTTGGGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAG...................................................................................GTGCCATTGGAAGGGTTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTATGGCAGTGCTGATCACCTGCCTTCAGCACATACATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAACCAGTTGGATCTACCAGAGTATCCCTCCAAAGAGCATCTAGAGGAGAGACTACTGCTTGCCATTCATGAAGCTAACGAAGGATTTGGATTTGGTTAAAACAACAATGGGTGGTCTGAATTAGATTCTGTAGATAATTTCCATGTTAAAAAAGAGAG-TTTTTTTTTATATATACAGGAGAACAGTCTAAGGGCATTTTAAGTCTGTGAGATACCTGTCTATAATGCTGTACAGTCTATTTGCTATGCGAAATGATCCTGGCN.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262975" ref_strand="+" ref_description="SGN-E262975 [cLEG-59-I17]">
      <seq>ggaagttgttcaagcttttagcaaggaagacaaagctcgccttcttcaatttgtcactggaacctcaaaggtgccattggaagggtttagtgcactgcaaggaatttcaggttcccagaaatttcagatccacaaagcttatggcagtgctgatcacctgccttcagcacatacatgtttcaaccagttggatctaccagagtatccctccaaagagcatctagaggagagactactgcttgccattcatgaagctaacgaaggatttggatttggttnaaacaacaatgggtggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="37165" stop="38589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37465" g_stop="37534" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37535" i_stop="37617" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37618" g_stop="37724" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="177" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37725" i_stop="38168" i_length="444">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38169" g_stop="38289" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="298" r_length="121" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E262975" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37465" e_stop="37534"/>
          <exon e_start="37618" e_stop="37724"/>
          <exon e_start="38169" e_stop="38289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAGGTAGTTTGTTGCTTTCATTTGATTATAGTTGCATGTTAAATGTCTCCTGCAATCATCAAACAAATCTGTGTGTAATTCTCCAGGTGCCATTGGAAGGGTTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTATGGCAGTGCTGATCACCTGCCTTCAGCACATACATGGTAATTATTTGATCATCTGAAACTAAATTATGATTGCCCTTCTTGATGCTGAAGCTTTGTGCCAGTAAAAGAACCATGTTGCTTCTCTTCTAGTTACTCAACCTTCTTATGTTTATGTAGCCATTTTAAATTACCTGTATTGCTGAAGATTCCAGTAGAAGTTCATGTTGCGTCCTGTGTCCAAATTGTCTTCTTTTGCTTTCTTCTGATGTGCATCTACTCAATTGAATTGACGTCTCTTCTCTATGAGATGGGAATCTTATATGAATATTTCAATTAAATGTCGACTATAAGTATTTATCCTAATCCCAATTAGACTTCAACTACTAGCAGCAAATAGAAACTTCTCCCTTTGAGTTCGGAGGGAGTATTCGGAATTCTACTTGTATGTATTCTTTACTTATATACTGTGAACACTCCTTAACTATTATTTGCTGGTTGCAGTTTCAACCAGTTGGATCTACCAGAGTATCCCTCCAAAGAGCATCTAGAGGAGAGACTACTGCTTGCCATTCATGAAGCTAACGAAGGATTTGGATTTGGTTAAAACAACAATGGGTGGTCT</genome_strand>
        <mrna_strand>GGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAG...................................................................................GTGCCATTGGAAGGGTTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTATGGCAGTGCTGATCACCTGCCTTCAGCACATACATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAACCAGTTGGATCTACCAGAGTATCCCTCCAAAGAGCATCTAGAGGAGAGACTACTGCTTGCCATTCATGAAGCTAACGAAGGATTTGGATTTGGTTNAAACAACAATGGGTGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220274" ref_strand="+" ref_description="SGN-E220274 [cLEL-12-E8](-)">
      <seq>aaagcttatggcagtactgatcacctgccttcagcacatacatgtttcaaccagttggatctaccagagtatccctccaaagagcatctagaggagaagactactgcttgccattcatgaagctaacgaaggatttggatttggttaaaacaacaatgggtggtctgaattagattctgtagataatttccatgttaaaaaagagagttttttttttatatatacaggagaacagtctaagggcattttaagtctgtgagatacctgtccactcatgctgtacagtctatatgctatgcgaantgatcctggcagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="37381" stop="38741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37681" g_stop="37724" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37725" i_stop="38168" i_length="444">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38169" g_stop="38441" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="319" r_length="275" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E220274" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37681" e_stop="37724"/>
          <exon e_start="38169" e_stop="38441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTATGGCAGTGCTGATCACCTGCCTTCAGCACATACATGGTAATTATTTGATCATCTGAAACTAAATTATGATTGCCCTTCTTGATGCTGAAGCTTTGTGCCAGTAAAAGAACCATGTTGCTTCTCTTCTAGTTACTCAACCTTCTTATGTTTATGTAGCCATTTTAAATTACCTGTATTGCTGAAGATTCCAGTAGAAGTTCATGTTGCGTCCTGTGTCCAAATTGTCTTCTTTTGCTTTCTTCTGATGTGCATCTACTCAATTGAATTGACGTCTCTTCTCTATGAGATGGGAATCTTATATGAATATTTCAATTAAATGTCGACTATAAGTATTTATCCTAATCCCAATTAGACTTCAACTACTAGCAGCAAATAGAAACTTCTCCCTTTGAGTTCGGAGGGAGTATTCGGAATTCTACTTGTATGTATTCTTTACTTATATACTGTGAACACTCCTTAACTATTATTTGCTGGTTGCAGTTTCAACCAGTTGGATCTACCAGAGTATCCCTCCAAAGAGCATCTAGAGGAG-AGACTACTGCTTGCCATTCATGAAGCTAACGAAGGATTTGGATTTGGTTAAAACAACAATGGGTGGTCTGAATTAGATTCTGTAGATAATTTCCATGTTAAAAAAGAGAGTTTTTTTTTTATATATACAGGAGAACAGTCTAAGGGCATTTTAAGTCTGTGAGATACCTGTCTA-TAATGCTGTACAGTCTATTTGCTATGCGAAATGATCCTGGCAGTTCT</genome_strand>
        <mrna_strand>AAAGCTTATGGCAGTACTGATCACCTGCCTTCAGCACATACATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAACCAGTTGGATCTACCAGAGTATCCCTCCAAAGAGCATCTAGAGGAGAAGACTACTGCTTGCCATTCATGAAGCTAACGAAGGATTTGGATTTGGTTAAAACAACAATGGGTGGTCTGAATTAGATTCTGTAGATAATTTCCATGTTAAAAAAGAGAGTTTTTTTTTTATATATACAGGAGAACAGTCTAAGGGCATTTTAAGTCTGTGAGATACCTGTCCACTCATGCTGTACAGTCTATATGCTATGCGAANTGATCCTGGCAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607993" ref_strand="+" ref_description="SGN-E607993 [23970]">
      <seq>atttggttaaaacactaatgggttttctgaattagattctgtagataacttccatgttaaaaaagagattttttatttatttatacaggagaacagtctaagggcattttaagtctgtgagatacctgtctataatgctgtacagtctatttgctatgccaaatgatcctggcagttctttttttggcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="37962" stop="38747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38262" g_stop="38453" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="191" polyA_stop="200"/>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E607993" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>192</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38262" e_stop="38453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGTTAAAACAACAATGGGTGGTCTGAATTAGATTCTGTAGATAATTTCCATGTTAAAAAAGAGAGTTTTTTTTTTATATATACAGGAGAACAGTCTAAGGGCATTTTAAGTCTGTGAGATACCTGTCTATAATGCTGTACAGTCTATTTGCTATGCGAAATGATCCTGGCAGTTCTTTTTTTTTGGCA</genome_strand>
        <mrna_strand>ATTTGGTTAAAACACTAATGGGTTTTCTGAATTAGATTCTGTAGATAACTTCCATGTTAAAAAAGAGA-TTTTTTATTTATTTATACAGGAGAACAGTCTAAGGGCATTTTAAGTCTGTGAGATACCTGTCTATAATGCTGTACAGTCTATTTGCTATGCCAAATGATCCTGGCAGTTC--TTTTTTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431202" ref_strand="-" ref_description="SGN-E431202 [STM-55-G7]">
      <seq>catcacttttgaatcttccttgcatagtggagtcatacaaaacttatgatgacaacgtgctcattaaatccgcagacattggtcaaatgattatggtgagagaagaaggggatcctgttccagatgtggtggaatatagacatggcctcacacctccaatgagagatgcacgaagacgaagatttcggagagagccagatcttaatcctgagcttgttcggcgtgttgataaagacttgcagaacataatgtctggtggaacagctgagaatattgatatagaagttgttgagcaagtggaaggaggtgaagcaagtgcacgccatgtgaacaagaaagtggcacaacctgcaacaaagcctgacatttccgagcccgggacagctggtgaggatcctgatagaactgagtctgaggattctgatgattcaatatagccgaggacattttccagcctttgctattgttatagtggctaccaagtctttgctattgttgtagtgcacttctggttagttgccgtcagaatttattaatgcagttggcttatcgagtctaggcttgaatatcgctgtaatataacagtttgcaatgtctacttcagacatgcgagcatgacaattgcaaattgtgttctgtaaagtgatggtctgtctccagtttgatgtattgaattcacttattttgttctgagaaaagaagatgtttatgcacatttggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="-" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="48749" stop="46662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48449" g_stop="48364" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48363" i_stop="48266" i_length="98">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="206" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48145" i_stop="47814" i_length="332">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47813" g_stop="47744" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="276" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47743" i_stop="47399" i_length="345">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47398" g_stop="46927" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="724" r_length="448" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="-" ref_id="SGN-E431202" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.033" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431202" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48449" e_stop="48364"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="47813" e_stop="47744"/>
          <exon e_start="47398" e_stop="46927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACTTTTGAATCTTCCTTGCATAGTGGAGTCGTACAAAACTTATGATGACAACGTGCTCATTAAATCCGCAGACATTGGTCAAGTAGGGTTAGGATTAATCTTTCTTTTTCCCTTCAGTTATATGAATATGATTTTTCAATCGTCATTGTTCCTAGAATGTAAACTTTGTTGATCTGACAGATGATTATGGTGAGAGAAGAAGGTGATCCTGTTCCAGATGTGGTGGAATATAGACATGGCCTCACACCTCCAATGAGAGATGCACGAAGACGAAGATTTCGGAGAGAGCCAGATCTTAATGTAACAGTCTTACTTTCCTGAGAAAAACTCATTTATTTACTTTCTAGTTTGTCCCGATAGAGAGAATGTCATGGGTGGGCTATCTATTCTGTGGAATGGGGGTATGATTTTTTTTGGAGGGCTTGGGGTATGTATGTGAAAGCAAATAGGGGCTTATTCTACCTGAGGCTTCTCAGTTTATCTGGTTCTCTGCTGATAAATGAATTGGAATAAAATCTGTTCGTAAATATAGTGGAGCTCTCCTTATCCCTTGATCCGCCCTTTTCTAGTTTTATATATTTTTTCTGGTAAGTATCCTTGTACTTACAATGTGCCTGTTATACTTTTCGCAGCCTGAGCTTGTTCGGCGTGTTGAGAAAGACTTGCAGAACATAATGTCTGGTGGAACAGCTGAGAATATTGATATCCTTTCATATTTCTTTTCTCCTCTAGTTTAAATAGAATGACACGTGGTCTATATATGAGAATGGAAGTTGCTAAATAGACTTATGTTAAATGTTTATATAGGCTATATTCTGACAAATTAGAACTGCGAGTTTTAACAAATCCTAGCTATGCTGTTGGTAAATTGACATTTGTTAGCTTGTACACCAGAGTCAGTTGGACAACTTTTGCTGGTGAAAGAACTTGTGAAAATTTCTGTTTGACTATTTACCAGGAATCGTGGTAATGTCAGGGAAACTTTAATGCTTTGAGCTTTAAAGTTTCATCTTTATCATTTTTGTTACTCCTTAACTAATCGATTACATATAGAAGTTGTCGAGCAAGAGGAAGGAGGTGAAGCAAGTGCACGCCATGTGAACAAGAAAGTGGCACAACCTGCAACAAAGCCTGACATTTCTGAGCCCGGGACAGCTGGTGAGGATCCTGATAGAACTGAATCTGAGGATTCTGATGATTCAATATAGTCGATGACATTTTTCAGCCTTTGCTATTGTTATAGTGGCTA-CAAGTCTTTGCTAATGTTGTAGTGCACTTCTAGTTAAGCGCCTTCAGAATTTATTAGAAATTTTAGCTCTTGTATTTTAATACAGTTGGCTTATCGTGTCTAGGTTTGAATATCGCTGTAATATAACAGTTTGCAATGTCTACTTCAGACATGCTAGCATGACAATTGCAAATTGTGTTCTGTAAAGTGATGGTCTATCTCCAGTTGGATGTATTGAATTTGCTTATTTTTTTTTACCTAAAATAAGATGTTTATTGCAAAATTGAACAA</genome_strand>
        <mrna_strand>CATCACTTTTGAATCTTCCTTGCATAGTGGAGTCATACAAAACTTATGATGACAACGTGCTCATTAAATCCGCAGACATTGGTCAA..................................................................................................ATGATTATGGTGAGAGAAGAAGGGGATCCTGTTCCAGATGTGGTGGAATATAGACATGGCCTCACACCTCCAATGAGAGATGCACGAAGACGAAGATTTCGGAGAGAGCCAGATCTTAAT............................................................................................................................................................................................................................................................................................................................................CCTGAGCTTGTTCGGCGTGTTGATAAAGACTTGCAGAACATAATGTCTGGTGGAACAGCTGAGAATATTG.........................................................................................................................................................................................................................................................................................................................................................ATATAGAAGTTGTTGAGCAAGTGGAAGGAGGTGAAGCAAGTGCACGCCATGTGAACAAGAAAGTGGCACAACCTGCAACAAAGCCTGACATTTCCGAGCCCGGGACAGCTGGTGAGGATCCTGATAGAACTGAGTCTGAGGATTCTGATGATTCAATATAGCCGAGGACATTTTCCAGCCTTTGCTATTGTTATAGTGGCTACCAAGTCTTTGCTATTGTTGTAGTGCACTTCTGGTTAGTTGCCGTCAGAATTTATT----A----A-----TG----------CAGTTGGCTTATCGAGTCTAGGCTTGAATATCGCTGTAATATAACAGTTTGCAATGTCTACTTCAGACATGCGAGCATGACAATTGCAAATTGTGTTCTGTAAAGTGATGGTCTGTCTCCAGTTTGATGTATTGAATTCACTTATTTTGTTCT-GAGAAAAGAAGATGTTTA-TGCACATTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415946" ref_strand="-" ref_description="SGN-E415946 [STM-22-A10]">
      <seq>ccgcagacattggtcaaatgattatgggagagaagaaggggatcctgttccagatgtggtggaatatagacatggcctcacacctccaatgagagatgcacgaagacgaagatttcggagagagccagatcttaatcctgagcttgttcggcgtgttgataaagacttgcagaacataatgtctggtggaacagctgagaatattgatatagaagttgttgagcaagtggaaggaggtgaagcaagtgcacgccatgtgaacaagaaagtggcacaacctgcaacaaagcctgacatttccgagcccgggacagctggtgaggatcctgatagaactgagtctgaggattctgatgattcaatatagccgaggacattttccagcctttgctattgttatagtggctaccaagtctttgctattgttgtagtgcacttctggttagttgccgtcagaatttattaatgcagttggcttatcgagtctaggcttgaatatcgctgtaatataacagtttgcaatgtctacttcagacatgcgagcatgacaattgcaaattgtgttctgtaaagtgatggtctgtctccagtttgatgtattgaattcacttattttgttctaagaaaagaagatgtttntgcacaaaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="-" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="48574" stop="46661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48380" g_stop="48364" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48363" i_stop="48266" i_length="98">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="136" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48145" i_stop="47814" i_length="332">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47813" g_stop="47744" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="206" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47743" i_stop="47399" i_length="345">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47398" g_stop="46928" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="653" r_length="447" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="-" ref_id="SGN-E415946" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.038" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415946" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48380" e_stop="48364"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="47813" e_stop="47744"/>
          <exon e_start="47398" e_stop="46928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAGACATTGGTCAAGTAGGGTTAGGATTAATCTTTCTTTTTCCCTTCAGTTATATGAATATGATTTTTCAATCGTCATTGTTCCTAGAATGTAAACTTTGTTGATCTGACAGATGATTATGGTGAGAGAAGAAGGTGATCCTGTTCCAGATGTGGTGGAATATAGACATGGCCTCACACCTCCAATGAGAGATGCACGAAGACGAAGATTTCGGAGAGAGCCAGATCTTAATGTAACAGTCTTACTTTCCTGAGAAAAACTCATTTATTTACTTTCTAGTTTGTCCCGATAGAGAGAATGTCATGGGTGGGCTATCTATTCTGTGGAATGGGGGTATGATTTTTTTTGGAGGGCTTGGGGTATGTATGTGAAAGCAAATAGGGGCTTATTCTACCTGAGGCTTCTCAGTTTATCTGGTTCTCTGCTGATAAATGAATTGGAATAAAATCTGTTCGTAAATATAGTGGAGCTCTCCTTATCCCTTGATCCGCCCTTTTCTAGTTTTATATATTTTTTCTGGTAAGTATCCTTGTACTTACAATGTGCCTGTTATACTTTTCGCAGCCTGAGCTTGTTCGGCGTGTTGAGAAAGACTTGCAGAACATAATGTCTGGTGGAACAGCTGAGAATATTGATATCCTTTCATATTTCTTTTCTCCTCTAGTTTAAATAGAATGACACGTGGTCTATATATGAGAATGGAAGTTGCTAAATAGACTTATGTTAAATGTTTATATAGGCTATATTCTGACAAATTAGAACTGCGAGTTTTAACAAATCCTAGCTATGCTGTTGGTAAATTGACATTTGTTAGCTTGTACACCAGAGTCAGTTGGACAACTTTTGCTGGTGAAAGAACTTGTGAAAATTTCTGTTTGACTATTTACCAGGAATCGTGGTAATGTCAGGGAAACTTTAATGCTTTGAGCTTTAAAGTTTCATCTTTATCATTTTTGTTACTCCTTAACTAATCGATTACATATAGAAGTTGTCGAGCAAGAGGAAGGAGGTGAAGCAAGTGCACGCCATGTGAACAAGAAAGTGGCACAACCTGCAACAAAGCCTGACATTTCTGAGCCCGGGACAGCTGGTGAGGATCCTGATAGAACTGAATCTGAGGATTCTGATGATTCAATATAGTCGATGACATTTTTCAGCCTTTGCTATTGTTATAGTGGCTA-CAAGTCTTTGCTAATGTTGTAGTGCACTTCTAGTTAAGCGCCTTCAGAATTTATTAGAAATTTTAGCTCTTGTATTTTAATACAGTTGGCTTATCGTGTCTAGGTTTGAATATCGCTGTAATATAACAGTTTGCAATGTCTACTTCAGACATGCTAGCATGACAATTGCAAATTGTGTTCTGTAAAGTGATGGTCTATCTCCAGTTGGATGTATTGAATTTGCTTATTTTTTTTTACCTAAAATAAGATGTTTATTGCAAAATTGAACA</genome_strand>
        <mrna_strand>CCGCAGACATTGGTCAA..................................................................................................ATGATTATGG-GAGAGAAGAAGGGGATCCTGTTCCAGATGTGGTGGAATATAGACATGGCCTCACACCTCCAATGAGAGATGCACGAAGACGAAGATTTCGGAGAGAGCCAGATCTTAAT............................................................................................................................................................................................................................................................................................................................................CCTGAGCTTGTTCGGCGTGTTGATAAAGACTTGCAGAACATAATGTCTGGTGGAACAGCTGAGAATATTG.........................................................................................................................................................................................................................................................................................................................................................ATATAGAAGTTGTTGAGCAAGTGGAAGGAGGTGAAGCAAGTGCACGCCATGTGAACAAGAAAGTGGCACAACCTGCAACAAAGCCTGACATTTCCGAGCCCGGGACAGCTGGTGAGGATCCTGATAGAACTGAGTCTGAGGATTCTGATGATTCAATATAGCCGAGGACATTTTCCAGCCTTTGCTATTGTTATAGTGGCTACCAAGTCTTTGCTATTGTTGTAGTGCACTTCTGGTTAGTTGCCGTCAGAATTTATT----A----A-----TG----------CAGTTGGCTTATCGAGTCTAGGCTTGAATATCGCTGTAATATAACAGTTTGCAATGTCTACTTCAGACATGCGAGCATGACAATTGCAAATTGTGTTCTGTAAAGTGATGGTCTGTCTCCAGTTTGATGTATTGAATTCACTTATTTTGTTCTA-AGAAAAGAAGATGTTT-NTGCACAAAAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585782" ref_strand="-" ref_description="SGN-E585782 [68246]">
      <seq>tttgaatcttccttgcatagtggagtcataccaaacttatgatgacaacgtgctcattaaatccgcagacattggtcaaatgattatggtgagagaagaaggggatcctgttccagatgtggtggaatatagacatggcctcacacctccaatgagagatgcacgaagacgaagatttcggagagagccagatcttaatcctgagcttgttcggcgtgttgataaagacttgcagaacataatgtctggtggaacagctgagaatattgatatagaagttgttgagcaagtggaaggaggtgaagcaagtgcacgccatgtgaacaagaaagtggcacaacctgcaacaaagcctgacatttccgagcccgggacagctggtgaggatcctgatagaactgagtctgaggattctgatgattcaatatagccgaggacattttccagcctttgctattgttatagtggctaccaagtctttgctattgttgtagtgcacttctggttagttgccgtcagaatttattaatgcagttggcttatcgagtctaggcttgaatatcgctgtaatataacagtttgcaatgtctacttcagacatgcgagcatgacaattgcaaattgtgttctgtaaagtgatggtctgtctccagtttgatgtattgaattcacttattttgttctaagataagaagatgtttattgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="-" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="48742" stop="46635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48442" g_stop="48364" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48363" i_stop="48266" i_length="98">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="199" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48145" i_stop="47814" i_length="332">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47813" g_stop="47744" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="269" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47743" i_stop="47399" i_length="345">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47398" g_stop="46929" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="716" r_length="447" r_score="0.881"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="-" ref_id="SGN-E585782" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.032" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585782" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48442" e_stop="48364"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="47813" e_stop="47744"/>
          <exon e_start="47398" e_stop="46929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAATCTTCCTTGCATAGTGGAGTCGTACAAAACTTATGATGACAACGTGCTCATTAAATCCGCAGACATTGGTCAAGTAGGGTTAGGATTAATCTTTCTTTTTCCCTTCAGTTATATGAATATGATTTTTCAATCGTCATTGTTCCTAGAATGTAAACTTTGTTGATCTGACAGATGATTATGGTGAGAGAAGAAGGTGATCCTGTTCCAGATGTGGTGGAATATAGACATGGCCTCACACCTCCAATGAGAGATGCACGAAGACGAAGATTTCGGAGAGAGCCAGATCTTAATGTAACAGTCTTACTTTCCTGAGAAAAACTCATTTATTTACTTTCTAGTTTGTCCCGATAGAGAGAATGTCATGGGTGGGCTATCTATTCTGTGGAATGGGGGTATGATTTTTTTTGGAGGGCTTGGGGTATGTATGTGAAAGCAAATAGGGGCTTATTCTACCTGAGGCTTCTCAGTTTATCTGGTTCTCTGCTGATAAATGAATTGGAATAAAATCTGTTCGTAAATATAGTGGAGCTCTCCTTATCCCTTGATCCGCCCTTTTCTAGTTTTATATATTTTTTCTGGTAAGTATCCTTGTACTTACAATGTGCCTGTTATACTTTTCGCAGCCTGAGCTTGTTCGGCGTGTTGAGAAAGACTTGCAGAACATAATGTCTGGTGGAACAGCTGAGAATATTGATATCCTTTCATATTTCTTTTCTCCTCTAGTTTAAATAGAATGACACGTGGTCTATATATGAGAATGGAAGTTGCTAAATAGACTTATGTTAAATGTTTATATAGGCTATATTCTGACAAATTAGAACTGCGAGTTTTAACAAATCCTAGCTATGCTGTTGGTAAATTGACATTTGTTAGCTTGTACACCAGAGTCAGTTGGACAACTTTTGCTGGTGAAAGAACTTGTGAAAATTTCTGTTTGACTATTTACCAGGAATCGTGGTAATGTCAGGGAAACTTTAATGCTTTGAGCTTTAAAGTTTCATCTTTATCATTTTTGTTACTCCTTAACTAATCGATTACATATAGAAGTTGTCGAGCAAGAGGAAGGAGGTGAAGCAAGTGCACGCCATGTGAACAAGAAAGTGGCACAACCTGCAACAAAGCCTGACATTTCTGAGCCCGGGACAGCTGGTGAGGATCCTGATAGAACTGAATCTGAGGATTCTGATGATTCAATATAGTCGATGACATTTTTCAGCCTTTGCTATTGTTATAGTGGCTA-CAAGTCTTTGCTAATGTTGTAGTGCACTTCTAGTTAAGCGCCTTCAGAATTTATTAGAAATTTTAGCTCTTGTATTTTAATACAGTTGGCTTATCGTGTCTAGGTTTGAATATCGCTGTAATATAACAGTTTGCAATGTCTACTTCAGACATGCTAGCATGACAATTGCAAATTGTGTTCTGTAAAGTGATGGTCTATCTCCAGTTGGATGTATTGAATTTGCTTATTTTTTTTTACCTAAAATAAGATGTTTATTGCAAAATTGAAC</genome_strand>
        <mrna_strand>TTTGAATCTTCCTTGCATAGTGGAGTCATACCAAACTTATGATGACAACGTGCTCATTAAATCCGCAGACATTGGTCAA..................................................................................................ATGATTATGGTGAGAGAAGAAGGGGATCCTGTTCCAGATGTGGTGGAATATAGACATGGCCTCACACCTCCAATGAGAGATGCACGAAGACGAAGATTTCGGAGAGAGCCAGATCTTAAT............................................................................................................................................................................................................................................................................................................................................CCTGAGCTTGTTCGGCGTGTTGATAAAGACTTGCAGAACATAATGTCTGGTGGAACAGCTGAGAATATTG.........................................................................................................................................................................................................................................................................................................................................................ATATAGAAGTTGTTGAGCAAGTGGAAGGAGGTGAAGCAAGTGCACGCCATGTGAACAAGAAAGTGGCACAACCTGCAACAAAGCCTGACATTTCCGAGCCCGGGACAGCTGGTGAGGATCCTGATAGAACTGAGTCTGAGGATTCTGATGATTCAATATAGCCGAGGACATTTTCCAGCCTTTGCTATTGTTATAGTGGCTACCAAGTCTTTGCTATTGTTGTAGTGCACTTCTGGTTAGTTGCCGTCAGAATTTATT----A----A-----TG----------CAGTTGGCTTATCGAGTCTAGGCTTGAATATCGCTGTAATATAACAGTTTGCAATGTCTACTTCAGACATGCGAGCATGACAATTGCAAATTGTGTTCTGTAAAGTGATGGTCTGTCTCCAGTTTGATGTATTGAATTCACTTATTTTGTTCTA-AGATAAGAAGATGTTTATTGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586082" ref_strand="-" ref_description="SGN-E586082 [73507]">
      <seq>tttgaatcttccttgcatagtggagtcatacaaaacttatgatgacaacgtgctcattaaatccgcagacattggtcaaatgattatggtgagagaagaaggggatcctgttccagatgtggtggaatatagacatggcctcacacctccaatgagagatgcacgaagacgaagatttcggagagagccagatcttaatcctgagcttgttcggcgtgttgataaagacttgcagaacataatgtctggtggaacagctgagaatattgatatagaagttgttgagcaagtggaaggaggtgaagcaagtgcacgccatgtgaacaagaaagtggcacaacctgcaacaaagcctgacatttccgagcccgggacagctggtgaggatcctgatagaactgagtctgaggattctgatgattcaatatagccgaggacattttccagcctttgctattgttatagtggctaccaagtctttgctattgttgtagtgcacttctggttagttgccgtcagaatttattaatgcagttggcttatcgagtctaggcttgaatatcgctgtaatataacagtttgcaatgtctacttcagacatgcgagcatgacaattgcaaattgtgttctgtaaagtgatggtctgtctccagtttgatgtattgaattcacttattttgttctaagataagaagatgtttattgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="-" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="48742" stop="46635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48442" g_stop="48364" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48363" i_stop="48266" i_length="98">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="199" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48145" i_stop="47814" i_length="332">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47813" g_stop="47744" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="269" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47743" i_stop="47399" i_length="345">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47398" g_stop="46929" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="716" r_length="447" r_score="0.881"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="-" ref_id="SGN-E586082" ref_strand="-">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.032" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586082" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48442" e_stop="48364"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="47813" e_stop="47744"/>
          <exon e_start="47398" e_stop="46929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAATCTTCCTTGCATAGTGGAGTCGTACAAAACTTATGATGACAACGTGCTCATTAAATCCGCAGACATTGGTCAAGTAGGGTTAGGATTAATCTTTCTTTTTCCCTTCAGTTATATGAATATGATTTTTCAATCGTCATTGTTCCTAGAATGTAAACTTTGTTGATCTGACAGATGATTATGGTGAGAGAAGAAGGTGATCCTGTTCCAGATGTGGTGGAATATAGACATGGCCTCACACCTCCAATGAGAGATGCACGAAGACGAAGATTTCGGAGAGAGCCAGATCTTAATGTAACAGTCTTACTTTCCTGAGAAAAACTCATTTATTTACTTTCTAGTTTGTCCCGATAGAGAGAATGTCATGGGTGGGCTATCTATTCTGTGGAATGGGGGTATGATTTTTTTTGGAGGGCTTGGGGTATGTATGTGAAAGCAAATAGGGGCTTATTCTACCTGAGGCTTCTCAGTTTATCTGGTTCTCTGCTGATAAATGAATTGGAATAAAATCTGTTCGTAAATATAGTGGAGCTCTCCTTATCCCTTGATCCGCCCTTTTCTAGTTTTATATATTTTTTCTGGTAAGTATCCTTGTACTTACAATGTGCCTGTTATACTTTTCGCAGCCTGAGCTTGTTCGGCGTGTTGAGAAAGACTTGCAGAACATAATGTCTGGTGGAACAGCTGAGAATATTGATATCCTTTCATATTTCTTTTCTCCTCTAGTTTAAATAGAATGACACGTGGTCTATATATGAGAATGGAAGTTGCTAAATAGACTTATGTTAAATGTTTATATAGGCTATATTCTGACAAATTAGAACTGCGAGTTTTAACAAATCCTAGCTATGCTGTTGGTAAATTGACATTTGTTAGCTTGTACACCAGAGTCAGTTGGACAACTTTTGCTGGTGAAAGAACTTGTGAAAATTTCTGTTTGACTATTTACCAGGAATCGTGGTAATGTCAGGGAAACTTTAATGCTTTGAGCTTTAAAGTTTCATCTTTATCATTTTTGTTACTCCTTAACTAATCGATTACATATAGAAGTTGTCGAGCAAGAGGAAGGAGGTGAAGCAAGTGCACGCCATGTGAACAAGAAAGTGGCACAACCTGCAACAAAGCCTGACATTTCTGAGCCCGGGACAGCTGGTGAGGATCCTGATAGAACTGAATCTGAGGATTCTGATGATTCAATATAGTCGATGACATTTTTCAGCCTTTGCTATTGTTATAGTGGCTA-CAAGTCTTTGCTAATGTTGTAGTGCACTTCTAGTTAAGCGCCTTCAGAATTTATTAGAAATTTTAGCTCTTGTATTTTAATACAGTTGGCTTATCGTGTCTAGGTTTGAATATCGCTGTAATATAACAGTTTGCAATGTCTACTTCAGACATGCTAGCATGACAATTGCAAATTGTGTTCTGTAAAGTGATGGTCTATCTCCAGTTGGATGTATTGAATTTGCTTATTTTTTTTTACCTAAAATAAGATGTTTATTGCAAAATTGAAC</genome_strand>
        <mrna_strand>TTTGAATCTTCCTTGCATAGTGGAGTCATACAAAACTTATGATGACAACGTGCTCATTAAATCCGCAGACATTGGTCAA..................................................................................................ATGATTATGGTGAGAGAAGAAGGGGATCCTGTTCCAGATGTGGTGGAATATAGACATGGCCTCACACCTCCAATGAGAGATGCACGAAGACGAAGATTTCGGAGAGAGCCAGATCTTAAT............................................................................................................................................................................................................................................................................................................................................CCTGAGCTTGTTCGGCGTGTTGATAAAGACTTGCAGAACATAATGTCTGGTGGAACAGCTGAGAATATTG.........................................................................................................................................................................................................................................................................................................................................................ATATAGAAGTTGTTGAGCAAGTGGAAGGAGGTGAAGCAAGTGCACGCCATGTGAACAAGAAAGTGGCACAACCTGCAACAAAGCCTGACATTTCCGAGCCCGGGACAGCTGGTGAGGATCCTGATAGAACTGAGTCTGAGGATTCTGATGATTCAATATAGCCGAGGACATTTTCCAGCCTTTGCTATTGTTATAGTGGCTACCAAGTCTTTGCTATTGTTGTAGTGCACTTCTGGTTAGTTGCCGTCAGAATTTATT----A----A-----TG----------CAGTTGGCTTATCGAGTCTAGGCTTGAATATCGCTGTAATATAACAGTTTGCAATGTCTACTTCAGACATGCGAGCATGACAATTGCAAATTGTGTTCTGTAAAGTGATGGTCTGTCTCCAGTTTGATGTATTGAATTCACTTATTTTGTTCTA-AGATAAGAAGATGTTTATTGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606786" ref_strand="-" ref_description="SGN-E606786 [22737]">
      <seq>ggtgaggatcctgatagaactgagtctgaggattctgatgattcaatatagccgaggacattttccagcctttgctattgttatagtggctaccaagtctttgctattgttgtagtgcacttctggttagttgccatcagaatttattagtaactttagctcttgtattttaatgcagttggcttatcgagtctaggcttgaatatcgctgtaatataacagtttgcaatgtctacttcagacatgcgagcatgacaattgcaaattgtgttctgtaaagtgatggtctgtctccagtttgatgtattgaattcgcttattttgttccaagataagaagatgtttattgcaaaattgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="-" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="47588" stop="46627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47288" g_stop="46930" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="360" polyA_stop="376"/>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="-" ref_id="SGN-E606786" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E606786" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47288" e_stop="46930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAGGATCCTGATAGAACTGAATCTGAGGATTCTGATGATTCAATATAGTCGATGACATTTTTCAGCCTTTGCTATTGTTATAGTGGCTA-CAAGTCTTTGCTAATGTTGTAGTGCACTTCTAGTTAAGCGCCTTCAGAATTTATTAGAAATTTTAGCTCTTGTATTTTAATACAGTTGGCTTATCGTGTCTAGGTTTGAATATCGCTGTAATATAACAGTTTGCAATGTCTACTTCAGACATGCTAGCATGACAATTGCAAATTGTGTTCTGTAAAGTGATGGTCTATCTCCAGTTGGATGTATTGAATTTGCTTATTTTTTTTTACCTAAAATAAGATGTTTATTGCAAAATTGAA</genome_strand>
        <mrna_strand>GGTGAGGATCCTGATAGAACTGAGTCTGAGGATTCTGATGATTCAATATAGCCGAGGACATTTTCCAGCCTTTGCTATTGTTATAGTGGCTACCAAGTCTTTGCTATTGTTGTAGTGCACTTCTGGTTAGTTGCCATCAGAATTTATTAGTAACTTTAGCTCTTGTATTTTAATGCAGTTGGCTTATCGAGTCTAGGCTTGAATATCGCTGTAATATAACAGTTTGCAATGTCTACTTCAGACATGCGAGCATGACAATTGCAAATTGTGTTCTGTAAAGTGATGGTCTGTCTCCAGTTTGATGTATTGAATTCGCTTATTTTGTTCCA-AGATAAGAAGATGTTTATTGCAAAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428263" ref_strand="-" ref_description="SGN-E428263 [STM-50-C9]">
      <seq>tgttgagaaagacttgcagaacataatgtctggtggaacagctgagagtattgacatagaagttgttgagcaagaggaaggaggtgaagtaagtgcacgccatgtgaacaagaaagtgacacaacctgcaacaaagccttacatttccgagcccgggacacctggtgaggatcctgatagaactgaatctgaggattctgatgattcaatatagccgaggacattttccagcctttgctattgttatagtggctaccaagtcttactattgttgtagtgcacttctggttagttgccgtcagaatttattagaaattttagctcttgtattttaatacagttggcttatcgagtctaggcttgaatgtcgctgtaatataacagtttgcaatgtctacttcagacatgcgagcatgacaattgcaaattggtgttctgtaaagtgatggtctgtctccagtttgatgtattgaattcgcttattttgttctaagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="-" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="48096" stop="46661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47796" g_stop="47744" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47743" i_stop="47399" i_length="345">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47398" g_stop="46956" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="497" r_length="444" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="-" ref_id="SGN-E428263" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428263" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47796" e_stop="47744"/>
          <exon e_start="47398" e_stop="46956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGAGAAAGACTTGCAGAACATAATGTCTGGTGGAACAGCTGAGAATATTGATATCCTTTCATATTTCTTTTCTCCTCTAGTTTAAATAGAATGACACGTGGTCTATATATGAGAATGGAAGTTGCTAAATAGACTTATGTTAAATGTTTATATAGGCTATATTCTGACAAATTAGAACTGCGAGTTTTAACAAATCCTAGCTATGCTGTTGGTAAATTGACATTTGTTAGCTTGTACACCAGAGTCAGTTGGACAACTTTTGCTGGTGAAAGAACTTGTGAAAATTTCTGTTTGACTATTTACCAGGAATCGTGGTAATGTCAGGGAAACTTTAATGCTTTGAGCTTTAAAGTTTCATCTTTATCATTTTTGTTACTCCTTAACTAATCGATTACATATAGAAGTTGTCGAGCAAGAGGAAGGAGGTGAAGCAAGTGCACGCCATGTGAACAAGAAAGTGGCACAACCTGCAACAAAGCCTGACATTTCTGAGCCCGGGACAGCTGGTGAGGATCCTGATAGAACTGAATCTGAGGATTCTGATGATTCAATATAGTCGATGACATTTTTCAGCCTTTGCTATTGTTATAGTGGCTA-CAAGTCTTTGCTAATGTTGTAGTGCACTTCTAGTTAAGCGCCTTCAGAATTTATTAGAAATTTTAGCTCTTGTATTTTAATACAGTTGGCTTATCGTGTCTAGGTTTGAATATCGCTGTAATATAACAGTTTGCAATGTCTACTTCAGACATGCTAGCATGACAATTGCAAATT-GTGTTCTGTAAAGTGATGGTCTATCTCCAGTTGGATGTATTGAATTTGCTTATTTTTTTTTACCTAA</genome_strand>
        <mrna_strand>TGTTGAGAAAGACTTGCAGAACATAATGTCTGGTGGAACAGCTGAGAGTATTG.........................................................................................................................................................................................................................................................................................................................................................ACATAGAAGTTGTTGAGCAAGAGGAAGGAGGTGAAGTAAGTGCACGCCATGTGAACAAGAAAGTGACACAACCTGCAACAAAGCCTTACATTTCCGAGCCCGGGACACCTGGTGAGGATCCTGATAGAACTGAATCTGAGGATTCTGATGATTCAATATAGCCGAGGACATTTTCCAGCCTTTGCTATTGTTATAGTGGCTACCAAGTC-TTACTATTGTTGTAGTGCACTTCTGGTTAGTTGCCGTCAGAATTTATTAGAAATTTTAGCTCTTGTATTTTAATACAGTTGGCTTATCGAGTCTAGGCTTGAATGTCGCTGTAATATAACAGTTTGCAATGTCTACTTCAGACATGCGAGCATGACAATTGCAAATTGGTGTTCTGTAAAGTGATGGTCTGTCTCCAGTTTGATGTATTGAATTCGCTTATTTTGTTCTAAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596166" ref_strand="+" ref_description="SGN-E596166 [39454]">
      <seq>aagacgggcagttttgtcataggcgacgagcactttcctgcatcacttttgaatcttccttgcatagtggagtcgtacaaaacttatgatgacaacgtgctcattaaatccgcagacattggtcaaatgattatggtgagagaagaaggtgatcctgttccagatgtggtggaatataggcatggcctcacacctccaatgagagatgcacgaagacgaagatttcggagagagccagatcttaatcctgagcttgttcgtcgtgttgataaagacttgcagaacataatgtctggtggaacagctgagaatattgatatagaagttgttgagcaagtggaaggaggtgaagcaagtgcacgccatgtgaacaagaaagtggcacaacctgcaacaaagcctgacatttccgagcccgggacagctggtgaggatcctgatagaactgagtctgaggattctgatgattcaatatagccgaggacattttccagcctttgctattgttatagtggctaccaagtctttgctattgttgtagtgcacttctggttagttgccatcagaatttattagtaactttagctcttgtattttaatgcagttggcttatcgagtctaggcttgaatatcgctgtaatataacagtttgcaatgtctacttcagacatgcgagcatgacaattgcaaattgtgttctgtaaagtgatggtctgtctccagtttgatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="-" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="48789" stop="46684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48489" g_stop="48364" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48363" i_stop="48266" i_length="98">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="246" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48145" i_stop="47814" i_length="332">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47813" g_stop="47744" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="316" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47743" i_stop="47399" i_length="345">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47398" g_stop="46984" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="732" r_length="416" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="-" ref_id="SGN-E596166" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E596166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48489" e_stop="48364"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="47813" e_stop="47744"/>
          <exon e_start="47398" e_stop="46984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACGGGCAGTTTTGTCATAGGCGATGTGCACTTTCCTGCATCACTTTTGAATCTTCCTTGCATAGTGGAGTCGTACAAAACTTATGATGACAACGTGCTCATTAAATCCGCAGACATTGGTCAAGTAGGGTTAGGATTAATCTTTCTTTTTCCCTTCAGTTATATGAATATGATTTTTCAATCGTCATTGTTCCTAGAATGTAAACTTTGTTGATCTGACAGATGATTATGGTGAGAGAAGAAGGTGATCCTGTTCCAGATGTGGTGGAATATAGACATGGCCTCACACCTCCAATGAGAGATGCACGAAGACGAAGATTTCGGAGAGAGCCAGATCTTAATGTAACAGTCTTACTTTCCTGAGAAAAACTCATTTATTTACTTTCTAGTTTGTCCCGATAGAGAGAATGTCATGGGTGGGCTATCTATTCTGTGGAATGGGGGTATGATTTTTTTTGGAGGGCTTGGGGTATGTATGTGAAAGCAAATAGGGGCTTATTCTACCTGAGGCTTCTCAGTTTATCTGGTTCTCTGCTGATAAATGAATTGGAATAAAATCTGTTCGTAAATATAGTGGAGCTCTCCTTATCCCTTGATCCGCCCTTTTCTAGTTTTATATATTTTTTCTGGTAAGTATCCTTGTACTTACAATGTGCCTGTTATACTTTTCGCAGCCTGAGCTTGTTCGGCGTGTTGAGAAAGACTTGCAGAACATAATGTCTGGTGGAACAGCTGAGAATATTGATATCCTTTCATATTTCTTTTCTCCTCTAGTTTAAATAGAATGACACGTGGTCTATATATGAGAATGGAAGTTGCTAAATAGACTTATGTTAAATGTTTATATAGGCTATATTCTGACAAATTAGAACTGCGAGTTTTAACAAATCCTAGCTATGCTGTTGGTAAATTGACATTTGTTAGCTTGTACACCAGAGTCAGTTGGACAACTTTTGCTGGTGAAAGAACTTGTGAAAATTTCTGTTTGACTATTTACCAGGAATCGTGGTAATGTCAGGGAAACTTTAATGCTTTGAGCTTTAAAGTTTCATCTTTATCATTTTTGTTACTCCTTAACTAATCGATTACATATAGAAGTTGTCGAGCAAGAGGAAGGAGGTGAAGCAAGTGCACGCCATGTGAACAAGAAAGTGGCACAACCTGCAACAAAGCCTGACATTTCTGAGCCCGGGACAGCTGGTGAGGATCCTGATAGAACTGAATCTGAGGATTCTGATGATTCAATATAGTCGATGACATTTTTCAGCCTTTGCTATTGTTATAGTGGCTA-CAAGTCTTTGCTAATGTTGTAGTGCACTTCTAGTTAAGCGCCTTCAGAATTTATTAGAAATTTTAGCTCTTGTATTTTAATACAGTTGGCTTATCGTGTCTAGGTTTGAATATCGCTGTAATATAACAGTTTGCAATGTCTACTTCAGACATGCTAGCATGACAATTGCAAATTGTGTTCTGTAAAGTGATGGTCTATCTCCAGTTGGATGTA</genome_strand>
        <mrna_strand>AAGACGGGCAGTTTTGTCATAGGCGACGAGCACTTTCCTGCATCACTTTTGAATCTTCCTTGCATAGTGGAGTCGTACAAAACTTATGATGACAACGTGCTCATTAAATCCGCAGACATTGGTCAA..................................................................................................ATGATTATGGTGAGAGAAGAAGGTGATCCTGTTCCAGATGTGGTGGAATATAGGCATGGCCTCACACCTCCAATGAGAGATGCACGAAGACGAAGATTTCGGAGAGAGCCAGATCTTAAT............................................................................................................................................................................................................................................................................................................................................CCTGAGCTTGTTCGTCGTGTTGATAAAGACTTGCAGAACATAATGTCTGGTGGAACAGCTGAGAATATTG.........................................................................................................................................................................................................................................................................................................................................................ATATAGAAGTTGTTGAGCAAGTGGAAGGAGGTGAAGCAAGTGCACGCCATGTGAACAAGAAAGTGGCACAACCTGCAACAAAGCCTGACATTTCCGAGCCCGGGACAGCTGGTGAGGATCCTGATAGAACTGAGTCTGAGGATTCTGATGATTCAATATAGCCGAGGACATTTTCCAGCCTTTGCTATTGTTATAGTGGCTACCAAGTCTTTGCTATTGTTGTAGTGCACTTCTGGTTAGTTGCCATCAGAATTTATTAGTAACTTTAGCTCTTGTATTTTAATGCAGTTGGCTTATCGAGTCTAGGCTTGAATATCGCTGTAATATAACAGTTTGCAATGTCTACTTCAGACATGCGAGCATGACAATTGCAAATTGTGTTCTGTAAAGTGATGGTCTGTCTCCAGTTTGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612166" ref_strand="+" ref_description="SGN-E612166 [61925]">
      <seq>ccgagcccgggacagctggtgaggatcctgatagaactgagtctgaggattctgatgattcaatatagccgaggacattttccagcctttgctattgttatagtggctaccaagtctttgctattgttgtagtgcacttctggttagttgccgtcagaatttattagaaattttagctcttgtattttaatgcagttggcttatcgagtctaggcttgaatattgctgtaatataacagtttgcaatgtctacttcagacatgcgagcatgacaattgcaaattgtgttctgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="-" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="47605" stop="46711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47305" g_stop="47011" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="297" polyA_stop="307"/>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="-" ref_id="SGN-E612166" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47305" e_stop="47011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGCCCGGGACAGCTGGTGAGGATCCTGATAGAACTGAATCTGAGGATTCTGATGATTCAATATAGTCGATGACATTTTTCAGCCTTTGCTATTGTTATAGTGGCTA-CAAGTCTTTGCTAATGTTGTAGTGCACTTCTAGTTAAGCGCCTTCAGAATTTATTAGAAATTTTAGCTCTTGTATTTTAATACAGTTGGCTTATCGTGTCTAGGTTTGAATATCGCTGTAATATAACAGTTTGCAATGTCTACTTCAGACATGCTAGCATGACAATTGCAAATTGTGTTCTGTAAA</genome_strand>
        <mrna_strand>CCGAGCCCGGGACAGCTGGTGAGGATCCTGATAGAACTGAGTCTGAGGATTCTGATGATTCAATATAGCCGAGGACATTTTCCAGCCTTTGCTATTGTTATAGTGGCTACCAAGTCTTTGCTATTGTTGTAGTGCACTTCTGGTTAGTTGCCGTCAGAATTTATTAGAAATTTTAGCTCTTGTATTTTAATGCAGTTGGCTTATCGAGTCTAGGCTTGAATATTGCTGTAATATAACAGTTTGCAATGTCTACTTCAGACATGCGAGCATGACAATTGCAAATTGTGTTCTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339256" ref_strand="+" ref_description="SGN-E339256 [cTOF-4-K6]">
      <seq>gcttcaacaattggcactattttgtgccatggatgagcaatttattctgagggttccaccttctgttgctgagcgaattgaccgtcttttaagtgaaaatccttcttcagaagacaaactggacttgtctttttctgaggatggaaagacgggcagttttgtcataggcgaggagcactttcctgcatcacttttgaatcttccttgcatagtggagtcgtacaaaacttatgatgacaacgtgctcattaaatccgcagacattggtcaaatgattatggtgagagaagaaggtgatcctgttccagatgtggtggaatatagacatggcctcacacctccaatgagagatgcacgaagacgaagatttcggagagagccagatcttaatcctgagcttgttcggcgtgttgagaaagacttgcagaacataatgtctggtggaacagctgagaatattgatatagaagttgtcgagcaagaggaaggaggtgaagcaagtgcacgccatgtgaacaagaaagtggcacaacctgcaacaaagcctgacatttctgagcccgggacagctggtgaggatcctgatagaactgaatctgangattctgatgattcaatatagtcgatgacatttttcagcctttgctattgttatagtggctacaagtctttgctaatgttgtagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="-" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="55412" stop="46873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55112" g_stop="55087" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55086" i_stop="54775" i_length="312">
            <donor d_prob="0.593" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54774" g_stop="54664" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="137" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54663" i_stop="48498" i_length="6166">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48497" g_stop="48364" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="271" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48363" i_stop="48266" i_length="98">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="391" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48145" i_stop="47814" i_length="332">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47813" g_stop="47744" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="461" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47743" i_stop="47399" i_length="345">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47398" g_stop="47173" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="687" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="-" ref_id="SGN-E339256" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55112" e_stop="55087"/>
          <exon e_start="54774" e_stop="54664"/>
          <exon e_start="48497" e_stop="48364"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="47813" e_stop="47744"/>
          <exon e_start="47398" e_stop="47173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAACAATTGGCACTATTTTGTGGTGAGAATTCTATCAATTTACTATGTTAAAGAGAGAAGAATCGAAATTCCTACTTATTAAAGCTTTTTTTCGAAGGAATTTGTTTGATCTATTTCTATAAATTTTGATTCTTTATTCAAAGTAGAGTACAAATTACTCGTTTGTATGATTCTTGACTGATACTTATGGAGAAGATAGTGATGTCAAAAGGGTGGAGAAGATAGTGATGTCAAAAGGGTTCTTTGATTGAAAGTAGAAAATCAAGTTTAAGGGTGTTTCTGAAGTTATTTTTGTTTGGTCAAAAGATTCAATTTTTCTTCTTAATTTGTGCAGCCATGGATGAGCAATTTATTCTGAGGGTTCCACCTTCTGTTGCTGAGCGAATTGACCGTCTTTTAAGTGAAAATCCTTCTTCAGAAGACAAACTGGACTTGTCTTTTTCTGGTAACTTCTTTTTTTCTTTTGGAGTTCTAAATATTGTTGTGCAGGAGCTTATAGTTTTAAGTTGATGGTCAAGAATACACTGAACTATCAGGTGTTCATTGTTCCCTTTTATTACTTGAAATGTGGCAATTATTAAGGTAGGAAAAGGAAACAACTAATAGTTGAGGTGTCTTTTGGTAACTAGTTGGTGATGGTTTAGGTAGGAAAAGTAAATACCGGACAGTTTAGGTTGAAAACTCGCAAAAATGTGATATTTCAAGTGTGATTTTTGCCATTATCTTTATAATTTTTGACACAATTATTTGACATGTTGGCATTTACTCTTTAGATTTAAACTAGTCCTACTTCACACCAACATTCCTTTTATGTTGTTTCACATCGTTAATACTCTCGCATCACCTATCAAAACAGGAAACCATAGTCCTTCCATCTTTTGCTTCCCATGTGTTCGTATTGTCATTCCTTGAACCTTTGATTATTATTTTTATGATAGCCAGGGTGTCCGAGCCAACCTGTGTACACTTCAGCTAATTCCACAAGTACTTGCTACCTCCGACTGTGCAAGTATTAGGTAACTCTTTTCACCAAAATTTGGACAGATGGGAAGAAATCATTAGTGTTTTTGCCTGTTGAACCTAGGACCTCACGGTTCTCAACCCACTTCATCGATCACTATTCACTAGGCCACCTCCGTGAGAGCTGAACCTTTTTACTCCCCCCTATATCTTCCAATTCCGTATACTGCTTCTGATTCAGAGAACCTTTGGGATTTAGAGAATCTGTGATTCGTCTTAAAAATGTTAAGTATTTAGTACTGGAATGAAATTTACTTGAATAGAGGGGAAAATACATAGAAGATTCATCCAAATCTAACTGATTTGGGATTGAGATGTGAATGATTAACTATAGACTGAATGGTTTTCCAAACAATTTTTATTCTCTGAGGTTATCTGGAATACCCATAAGAAGTTCCAAAATATTGGGGGTGTGAAGTTGTCAATAGAGCATAGTTTATTCTACTGTCGTTTTGATTGAATTTGTAAATTAATAGTCTTTGGTGTCCACAAGTTATATGGCCTCATCTGATTTCTAAGGCAGGATTTTCCCCCCATTGTGGCCCGCCATACCTAGGTCTTTTCTTTCATATGCTAATAAGTGAAAACATCGTGGTCTGAGTTTTGGATTTTTGTCCAGACCTCCCTGAGATCCAATGAGGATGAAAACTTCATCCTTGTTTATTTCTTCTAAAGTGGGAAGAGAGGTTAAGTAGTCATTGTCTTCATAGGTAACTTTCTTAGGGATGCAGCTTAATATGTTCCAGTCCACTTGTTCCTTTTGAGTGAATTGTTTTTGGAAAAAATTGACTGCTTCAAAAGCTCTGCCATCTTCCCCTTCTATCCAATTCCCAAACTCATTCTTTATAGTCTTGAGCATAAGTCTCCTCCTTTTACTATTGATAACTGATGGAAGAACTTGGTGTTGTAGTCTCCTTCCTTAAGCCATTTAAGTGTAGCTTTTTGTCTAAAGTAAGTCTTCAGTTTTCAAATGCTTAATGAATTCAGCATTTGCCTTATTGTATTCTTGTCTGATGGTGCTAGAATGGTTGGTTTCCATTATGGTTTCAGGATCTTTTACCTTTTTTTCAAGCTTCTTGGTGTTTTAAAAAATGTCACCAATGCTGTTTTTTGACCACCAAGAAAGATGTTTGCGCACATTTTTAAGTTTCAAATGCATTTTCCACATTGGGTTGCCATGGACTTGAATGTTCCACGCATTTTGAATAACTCCCAAGTAGTCAGGTTGCTCTGTCCAAAAATCAAGAAACTTGAAGTACTTAATTCTCTGAGGAGTACCTGTAGAGAAAGAAAAGAAAACAGGTGACTGATCTGATCCTGTTCTTATGAGATGAGATATGCTAGAATCAGGAAAAGTCTTAATCCACTCGTCATTAGCCACGACTCTGTCTAGCCGTTTCCAAATCCTGTCTTCAGGGAATCTGCCATTACACCACGTGTATTTGGAGCCAATAAAGCCCAAGTCAAGCAAATTACAGTCCATTAGGCAGTCTAAGAAAGGTAATCTTTTGGCCGTCCTGTGGGAGTTGCCCCCCTTTTTTTCTTCTGGACCAACGATGCAATTAAAGTCTCCTGTAACACACCAAGGAGATGAGATGTTAGCAGACCAGTCCCTCAAACTATCCCACAAGTCATTTCTGAGGTGAGCTTTGCATTTAGCATAGACAACAGAGATAATAGTCTTGACATCTTCACAGACAAGCTCACAGGTAAGAATTTGATATTCATCTCCTCAGATCACACACTTCTGTTGAGAGTCACAAAATATCCAAATCTTAATATTGGAATTGGCAAAACAGTAGTCAAAACCAAGAATTTTGTTGTGTCTCAAAATTTTGGAAGTATTAGTGAAAGGTTCAAGGACGGCAAGAAAAGTAACATGTTGAGAGGATTTAATCATTTTCAATCTCTCAAGAGCACCTTTGTTATTAATGGCCCTCACATTCCAAATAAGAGTCTTGATCACTAATAAAAGGCGATTTAGAGAGTAATTTTTGACTGTGATCTAGTCACAGTAGTATTAACATGGGAGCTATCTCCTTTGTTGGATTTGTTTCTTCTGTATTTCTACTCTTTTCCTAGAGAGGAAAGATTGGTGTTGTCAATAATTTCTCCAAAAGCTTGCTGGACTTCTTTTTTTACTAATATGGGAGGGTCATAAGCATCATCATCACTGTCTTCAGAACTTGAACTGCCTTTTTCAAGACTTTCATATTCATTCGCACTGTCTGAGACATCAACATCTTCTTCCTATTCAGATTCTAAATCATCATCTTCAGTAACCTCATTACTGTTCAACTGTTGCCTTACTTTGTTAGGAAGTTCTTTACCAGATGGTCTCTCTTTAATTTGAACCTCGTCCTCATTAGACGATTCAGAGTCAGAGCTTTCTTGGATTGTCATAGCTTGTAAGTGAGTATTTTCAGTATCATGTGGCTGAGCTTGTGTTTGCTTTCTTCTGTTGGAAGCTGTTTCAGCATGTTGAATTTGCTTATTTGATGTGATATTGTGTTGGTTGTGACCCTGTGATCCTTGGGATGAGCTCTTTGATTGTCGTCGTTGCGGCAGAGCATTTTCTGATCTTTGCTTAACTTTAGCAGTATGATCTAATTTGTTGGCAGCATTCTTTTTCTGTTGGATTGGTTGAGGTTGTTGTTGAGTGCTAGCTCTACCTGTTAGGGTAGTAGAGATTTTCCCCTTGTTCTTTTCCACAACATCGCCATTCTTATTTTTTCGTGACTCTTCCTGAATAGTAGTGGAAGTGAGTTTGCTAGTCTCGACATATTTTGGGTTGCCTTGCGTCTTTTTTGTAGTATGCTGACGCAACTGCTTTTGCACATCAAGAGTGGATGTGTTCTGCTTCATGTTAGTTTGAGTTCGGACAGTGTGCTACTTGGTGTTGTTCTTGATTTTTACATGATCTTTATTGCTATTCTGATGATCAACTTGCTTATCATTAAGAACTTGAGCAGGATGCTTGTTCTGGGCTTGTTCCCGTCTACTCTTGATATTAGAGGTTTGAGCAATAACAACTTGGTTAACGATGCTAGTATCATTTCCCATAGACGGTACCGAATTGGTCCTAACATTAGGGTTATCCTGGTTGGTTTGGTTCTTAGTTTTCTCAGTGCTCTTCTTTCCTTTTCTGGTAACAGTGGTAAAACCATCATCTTCATCGTGATTTTCATGTGCTTGTTTTCTCTGTTGGTTTAAATCCTCTTGCTTTTGAGCTTTAATTCTTTCATCTCTAGCTTTGTTCCTGCATTCCATTTCGAGATGTGCTTGGAGTTTACAGTAGAGACAGTATAACGGGGCATCCTGATATTCAATATCTAACTAAACCCCATCGTCAGTGCCGTCAAGCCTGGAAAAGCCAAGCCATATTTGATCCATCTTGGGTTTGAGGAGGTCTATCTCGACCTTGATTTTAGCCACATCGCCTCTAGACTTTGAGTCTGTGGCCTGATCAGGAGCAACCGCAGTTCCCACAGCATTCAAAATCCTCAAACTATGTCCCAATGAAAAAGGTGCCACGGCAGCTTATGAATAAGAATCTAAGTAGGAGCGATTGAGGTTCCCACTTCGGGTTTGAAATCCGGAGTATAATTGAGAATTTTCATAGGAGTATCACCAATGTGAATCCAACTTTTGAAAAGGATATGACTATAATCTGTTTCATTTGAAAAATCCAAATAGACATGTTGAGGGTTGAAGTAAGCCACTTTGGCAGAATCTTTGAGGTGAAATTTTGTAGCTAAAGATTTCCTTATTTCTCCACAGTAGGTTTGCCCTTGGAATATTTTTCTACTATGGTAAACTTGCATGACTCAGCTAGATTAACAAAGTAATCATTGGCAATTAAATAAACAGCTGGTTTACCTAGATGATTACTGTGAGTAATTTCCACCGGAGAGATTCTTAGACTGCTCTGCAAATTTACCTTGATCAGCTGCTGCAAAAGAAGCTTTGGAGATGTAGGATTCCATCTGTTTTTCGGCACCAGCTTGTGAAGCTATGTTGGCCCCATCTTTAGTATTATCATTGGACGTATTAGATTGATCAGCAGATTTGGGGGCTTTATCAAAATTGGAGGACATTTTTGGGAAAGAATCCTTTCGAGAATTGGTATTAGTGGTGTTGTGATTAATGGTTGTGTCACCCTTCTCGTTCTGCGTAACAGGTTCACCCGAGAAATTCTCTTTGTTCCTTACATCATCTTCAGAAGATGATTCTGGATTTCGAATAGTCTCAACACTGTTCTCGAGAGTTGGAGAAGGAACGGTGTCTTTGTGGTTGATTCGAGAGGAGGAAAGGTTTCCATCGTGGTTGAATTGGGTTGCTCCGGTGATAGTCATCTCTTTGTTTGTTACAGTTGGGGGCTGAGTAAGGGTGGAGGTGCGGATATCAGGAGGGACAGGTGGTGGTCCGTTGGGCTCTGGCCCAAATAAATCGACCGTTAGCACAGGTTAGAGAGAGAAATAATTTAGAGAGAAGGCAGCGCATTTTGATTGTTCTTTAGAGAGATTTTCTCCTCTCCTTTTTGCGTGTGTGGATATATATACATATATATCTCGTACCGTCTGGTTTCTTTTGTTTTTATCTATAGCTTGCTGATTGTGTAAGTATATTTGTGGTATGTCTTAATGAGTTGGATTAAGACATAGGTATTCTATGCTGTATTGTTCTCTTGCTTTCTTCCTTCCGGAGAGGAATACAATCCTTTTGAAATGGTGAAAGAGTTTGGAAGACAGTTATTCATTGATTTCTCCTCCTTCACAGCATAAATCCCCCTGTATGTACATTAGGGTAGGTTCTGATCTTCTTTTTTTAGTTTGGGGTGTAGTGAGACCAGTCACTCCGTCAATCTAAAGATAAATGATCTCATATCAGGTTCTTGACTTAGAGTTGGAGCCTTTTAATTTTTTTCATTTATAGGTAGACTATGAAGAAACTTCAATAGAAATAAAAACCAAGGATTAAGAAGCACTGCTACAATCTTAATCCTACTCTAATAGTTCTTATTCAAAAGTTGCATGAGACAATTAGTACAAGGTTTCATGTATCAGCAACTAAGAATTAGCTCTAGAAACTTGTCAATGTCCACAAATTAGTTGGTGCTAGTTGGGGTAAAGTACCATATTTTCTGGATCTTTTTTATAATTTATTTAATACCGGACTATCCTACAAATTAACCGGGATTTCTGACTTGCGACACAAATTTGACTCTATTGCCAACCATTGCATCATGTTCTTCAACTTTGTAGATGAAGATATATAGTCATCTGTGATTATGCACCATTTTATTGTAGTTACTGTTTTTTAGGGAATGCTTTGCCATGCTTTTTATTGTATTTTTCCATGATTTATTCACTTCTGATTATTTCTTTTTTGATCTGCTTTAATATGCTTTTCAGTGAACTGAGGGTCTATCGAAAACAACCTCTCTACCCTCCCAAGTACCCCCCCCCCCCCCACCCACCCACCCCACCCACCCACTTGTGGAATTATATGTTGTTGTTGTAGTACTCATCTTTTAAGCATCTTATCATACTTCATGCATGTGCTTTTTGAACAAGTGTTGTTCTTTTCAGAGGATGGAAAGACGGGCAGTTTTGTCATAGGCGATGTGCACTTTCCTGCATCACTTTTGAATCTTCCTTGCATAGTGGAGTCGTACAAAACTTATGATGACAACGTGCTCATTAAATCCGCAGACATTGGTCAAGTAGGGTTAGGATTAATCTTTCTTTTTCCCTTCAGTTATATGAATATGATTTTTCAATCGTCATTGTTCCTAGAATGTAAACTTTGTTGATCTGACAGATGATTATGGTGAGAGAAGAAGGTGATCCTGTTCCAGATGTGGTGGAATATAGACATGGCCTCACACCTCCAATGAGAGATGCACGAAGACGAAGATTTCGGAGAGAGCCAGATCTTAATGTAACAGTCTTACTTTCCTGAGAAAAACTCATTTATTTACTTTCTAGTTTGTCCCGATAGAGAGAATGTCATGGGTGGGCTATCTATTCTGTGGAATGGGGGTATGATTTTTTTTGGAGGGCTTGGGGTATGTATGTGAAAGCAAATAGGGGCTTATTCTACCTGAGGCTTCTCAGTTTATCTGGTTCTCTGCTGATAAATGAATTGGAATAAAATCTGTTCGTAAATATAGTGGAGCTCTCCTTATCCCTTGATCCGCCCTTTTCTAGTTTTATATATTTTTTCTGGTAAGTATCCTTGTACTTACAATGTGCCTGTTATACTTTTCGCAGCCTGAGCTTGTTCGGCGTGTTGAGAAAGACTTGCAGAACATAATGTCTGGTGGAACAGCTGAGAATATTGATATCCTTTCATATTTCTTTTCTCCTCTAGTTTAAATAGAATGACACGTGGTCTATATATGAGAATGGAAGTTGCTAAATAGACTTATGTTAAATGTTTATATAGGCTATATTCTGACAAATTAGAACTGCGAGTTTTAACAAATCCTAGCTATGCTGTTGGTAAATTGACATTTGTTAGCTTGTACACCAGAGTCAGTTGGACAACTTTTGCTGGTGAAAGAACTTGTGAAAATTTCTGTTTGACTATTTACCAGGAATCGTGGTAATGTCAGGGAAACTTTAATGCTTTGAGCTTTAAAGTTTCATCTTTATCATTTTTGTTACTCCTTAACTAATCGATTACATATAGAAGTTGTCGAGCAAGAGGAAGGAGGTGAAGCAAGTGCACGCCATGTGAACAAGAAAGTGGCACAACCTGCAACAAAGCCTGACATTTCTGAGCCCGGGACAGCTGGTGAGGATCCTGATAGAACTGAATCTGAGGATTCTGATGATTCAATATAGTCGATGACATTTTTCAGCCTTTGCTATTGTTATAGTGGCTACAAGTCTTTGCTAATGTTGTAGTG</genome_strand>
        <mrna_strand>GCTTCAACAATTGGCACTATTTTGTG........................................................................................................................................................................................................................................................................................................................CCATGGATGAGCAATTTATTCTGAGGGTTCCACCTTCTGTTGCTGAGCGAATTGACCGTCTTTTAAGTGAAAATCCTTCTTCAGAAGACAAACTGGACTTGTCTTTTTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGGAAAGACGGGCAGTTTTGTCATAGGCGAGGAGCACTTTCCTGCATCACTTTTGAATCTTCCTTGCATAGTGGAGTCGTACAAAACTTATGATGACAACGTGCTCATTAAATCCGCAGACATTGGTCAA..................................................................................................ATGATTATGGTGAGAGAAGAAGGTGATCCTGTTCCAGATGTGGTGGAATATAGACATGGCCTCACACCTCCAATGAGAGATGCACGAAGACGAAGATTTCGGAGAGAGCCAGATCTTAAT............................................................................................................................................................................................................................................................................................................................................CCTGAGCTTGTTCGGCGTGTTGAGAAAGACTTGCAGAACATAATGTCTGGTGGAACAGCTGAGAATATTG.........................................................................................................................................................................................................................................................................................................................................................ATATAGAAGTTGTCGAGCAAGAGGAAGGAGGTGAAGCAAGTGCACGCCATGTGAACAAGAAAGTGGCACAACCTGCAACAAAGCCTGACATTTCTGAGCCCGGGACAGCTGGTGAGGATCCTGATAGAACTGAATCTGANGATTCTGATGATTCAATATAGTCGATGACATTTTTCAGCCTTTGCTATTGTTATAGTGGCTACAAGTCTTTGCTAATGTTGTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E563824" ref_strand="+" ref_description="SGN-E563824 [2265]">
      <seq>gttgctgagcgaattgaccgtcttttaagtgaaaattcttcttcagaagacaaactggacttgtctttttctgaggatggaaagacgggcagttttgtcataggcgacgagcactttcctgcatcacttttgaatcttccttgcatagtggagtcatacaaaacttatgatgacaacgtgctcattaaatccgcagacattggtcaaatgattatggtgagagaagaaggggatcctgttccagatgtggtggaatatagacatggcctcacacctccaatgagagatgcacgaagacgaagatttcggagagagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="-" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="55036" stop="47855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54736" g_stop="54664" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54663" i_stop="48498" i_length="6166">
            <donor d_prob="0.830" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48497" g_stop="48364" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="207" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48363" i_stop="48266" i_length="98">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48265" g_stop="48155" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="318" r_length="111" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="-" ref_id="SGN-E563824" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E563824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54736" e_stop="54664"/>
          <exon e_start="48497" e_stop="48364"/>
          <exon e_start="48265" e_stop="48155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTGAGCGAATTGACCGTCTTTTAAGTGAAAATCCTTCTTCAGAAGACAAACTGGACTTGTCTTTTTCTGGTAACTTCTTTTTTTCTTTTGGAGTTCTAAATATTGTTGTGCAGGAGCTTATAGTTTTAAGTTGATGGTCAAGAATACACTGAACTATCAGGTGTTCATTGTTCCCTTTTATTACTTGAAATGTGGCAATTATTAAGGTAGGAAAAGGAAACAACTAATAGTTGAGGTGTCTTTTGGTAACTAGTTGGTGATGGTTTAGGTAGGAAAAGTAAATACCGGACAGTTTAGGTTGAAAACTCGCAAAAATGTGATATTTCAAGTGTGATTTTTGCCATTATCTTTATAATTTTTGACACAATTATTTGACATGTTGGCATTTACTCTTTAGATTTAAACTAGTCCTACTTCACACCAACATTCCTTTTATGTTGTTTCACATCGTTAATACTCTCGCATCACCTATCAAAACAGGAAACCATAGTCCTTCCATCTTTTGCTTCCCATGTGTTCGTATTGTCATTCCTTGAACCTTTGATTATTATTTTTATGATAGCCAGGGTGTCCGAGCCAACCTGTGTACACTTCAGCTAATTCCACAAGTACTTGCTACCTCCGACTGTGCAAGTATTAGGTAACTCTTTTCACCAAAATTTGGACAGATGGGAAGAAATCATTAGTGTTTTTGCCTGTTGAACCTAGGACCTCACGGTTCTCAACCCACTTCATCGATCACTATTCACTAGGCCACCTCCGTGAGAGCTGAACCTTTTTACTCCCCCCTATATCTTCCAATTCCGTATACTGCTTCTGATTCAGAGAACCTTTGGGATTTAGAGAATCTGTGATTCGTCTTAAAAATGTTAAGTATTTAGTACTGGAATGAAATTTACTTGAATAGAGGGGAAAATACATAGAAGATTCATCCAAATCTAACTGATTTGGGATTGAGATGTGAATGATTAACTATAGACTGAATGGTTTTCCAAACAATTTTTATTCTCTGAGGTTATCTGGAATACCCATAAGAAGTTCCAAAATATTGGGGGTGTGAAGTTGTCAATAGAGCATAGTTTATTCTACTGTCGTTTTGATTGAATTTGTAAATTAATAGTCTTTGGTGTCCACAAGTTATATGGCCTCATCTGATTTCTAAGGCAGGATTTTCCCCCCATTGTGGCCCGCCATACCTAGGTCTTTTCTTTCATATGCTAATAAGTGAAAACATCGTGGTCTGAGTTTTGGATTTTTGTCCAGACCTCCCTGAGATCCAATGAGGATGAAAACTTCATCCTTGTTTATTTCTTCTAAAGTGGGAAGAGAGGTTAAGTAGTCATTGTCTTCATAGGTAACTTTCTTAGGGATGCAGCTTAATATGTTCCAGTCCACTTGTTCCTTTTGAGTGAATTGTTTTTGGAAAAAATTGACTGCTTCAAAAGCTCTGCCATCTTCCCCTTCTATCCAATTCCCAAACTCATTCTTTATAGTCTTGAGCATAAGTCTCCTCCTTTTACTATTGATAACTGATGGAAGAACTTGGTGTTGTAGTCTCCTTCCTTAAGCCATTTAAGTGTAGCTTTTTGTCTAAAGTAAGTCTTCAGTTTTCAAATGCTTAATGAATTCAGCATTTGCCTTATTGTATTCTTGTCTGATGGTGCTAGAATGGTTGGTTTCCATTATGGTTTCAGGATCTTTTACCTTTTTTTCAAGCTTCTTGGTGTTTTAAAAAATGTCACCAATGCTGTTTTTTGACCACCAAGAAAGATGTTTGCGCACATTTTTAAGTTTCAAATGCATTTTCCACATTGGGTTGCCATGGACTTGAATGTTCCACGCATTTTGAATAACTCCCAAGTAGTCAGGTTGCTCTGTCCAAAAATCAAGAAACTTGAAGTACTTAATTCTCTGAGGAGTACCTGTAGAGAAAGAAAAGAAAACAGGTGACTGATCTGATCCTGTTCTTATGAGATGAGATATGCTAGAATCAGGAAAAGTCTTAATCCACTCGTCATTAGCCACGACTCTGTCTAGCCGTTTCCAAATCCTGTCTTCAGGGAATCTGCCATTACACCACGTGTATTTGGAGCCAATAAAGCCCAAGTCAAGCAAATTACAGTCCATTAGGCAGTCTAAGAAAGGTAATCTTTTGGCCGTCCTGTGGGAGTTGCCCCCCTTTTTTTCTTCTGGACCAACGATGCAATTAAAGTCTCCTGTAACACACCAAGGAGATGAGATGTTAGCAGACCAGTCCCTCAAACTATCCCACAAGTCATTTCTGAGGTGAGCTTTGCATTTAGCATAGACAACAGAGATAATAGTCTTGACATCTTCACAGACAAGCTCACAGGTAAGAATTTGATATTCATCTCCTCAGATCACACACTTCTGTTGAGAGTCACAAAATATCCAAATCTTAATATTGGAATTGGCAAAACAGTAGTCAAAACCAAGAATTTTGTTGTGTCTCAAAATTTTGGAAGTATTAGTGAAAGGTTCAAGGACGGCAAGAAAAGTAACATGTTGAGAGGATTTAATCATTTTCAATCTCTCAAGAGCACCTTTGTTATTAATGGCCCTCACATTCCAAATAAGAGTCTTGATCACTAATAAAAGGCGATTTAGAGAGTAATTTTTGACTGTGATCTAGTCACAGTAGTATTAACATGGGAGCTATCTCCTTTGTTGGATTTGTTTCTTCTGTATTTCTACTCTTTTCCTAGAGAGGAAAGATTGGTGTTGTCAATAATTTCTCCAAAAGCTTGCTGGACTTCTTTTTTTACTAATATGGGAGGGTCATAAGCATCATCATCACTGTCTTCAGAACTTGAACTGCCTTTTTCAAGACTTTCATATTCATTCGCACTGTCTGAGACATCAACATCTTCTTCCTATTCAGATTCTAAATCATCATCTTCAGTAACCTCATTACTGTTCAACTGTTGCCTTACTTTGTTAGGAAGTTCTTTACCAGATGGTCTCTCTTTAATTTGAACCTCGTCCTCATTAGACGATTCAGAGTCAGAGCTTTCTTGGATTGTCATAGCTTGTAAGTGAGTATTTTCAGTATCATGTGGCTGAGCTTGTGTTTGCTTTCTTCTGTTGGAAGCTGTTTCAGCATGTTGAATTTGCTTATTTGATGTGATATTGTGTTGGTTGTGACCCTGTGATCCTTGGGATGAGCTCTTTGATTGTCGTCGTTGCGGCAGAGCATTTTCTGATCTTTGCTTAACTTTAGCAGTATGATCTAATTTGTTGGCAGCATTCTTTTTCTGTTGGATTGGTTGAGGTTGTTGTTGAGTGCTAGCTCTACCTGTTAGGGTAGTAGAGATTTTCCCCTTGTTCTTTTCCACAACATCGCCATTCTTATTTTTTCGTGACTCTTCCTGAATAGTAGTGGAAGTGAGTTTGCTAGTCTCGACATATTTTGGGTTGCCTTGCGTCTTTTTTGTAGTATGCTGACGCAACTGCTTTTGCACATCAAGAGTGGATGTGTTCTGCTTCATGTTAGTTTGAGTTCGGACAGTGTGCTACTTGGTGTTGTTCTTGATTTTTACATGATCTTTATTGCTATTCTGATGATCAACTTGCTTATCATTAAGAACTTGAGCAGGATGCTTGTTCTGGGCTTGTTCCCGTCTACTCTTGATATTAGAGGTTTGAGCAATAACAACTTGGTTAACGATGCTAGTATCATTTCCCATAGACGGTACCGAATTGGTCCTAACATTAGGGTTATCCTGGTTGGTTTGGTTCTTAGTTTTCTCAGTGCTCTTCTTTCCTTTTCTGGTAACAGTGGTAAAACCATCATCTTCATCGTGATTTTCATGTGCTTGTTTTCTCTGTTGGTTTAAATCCTCTTGCTTTTGAGCTTTAATTCTTTCATCTCTAGCTTTGTTCCTGCATTCCATTTCGAGATGTGCTTGGAGTTTACAGTAGAGACAGTATAACGGGGCATCCTGATATTCAATATCTAACTAAACCCCATCGTCAGTGCCGTCAAGCCTGGAAAAGCCAAGCCATATTTGATCCATCTTGGGTTTGAGGAGGTCTATCTCGACCTTGATTTTAGCCACATCGCCTCTAGACTTTGAGTCTGTGGCCTGATCAGGAGCAACCGCAGTTCCCACAGCATTCAAAATCCTCAAACTATGTCCCAATGAAAAAGGTGCCACGGCAGCTTATGAATAAGAATCTAAGTAGGAGCGATTGAGGTTCCCACTTCGGGTTTGAAATCCGGAGTATAATTGAGAATTTTCATAGGAGTATCACCAATGTGAATCCAACTTTTGAAAAGGATATGACTATAATCTGTTTCATTTGAAAAATCCAAATAGACATGTTGAGGGTTGAAGTAAGCCACTTTGGCAGAATCTTTGAGGTGAAATTTTGTAGCTAAAGATTTCCTTATTTCTCCACAGTAGGTTTGCCCTTGGAATATTTTTCTACTATGGTAAACTTGCATGACTCAGCTAGATTAACAAAGTAATCATTGGCAATTAAATAAACAGCTGGTTTACCTAGATGATTACTGTGAGTAATTTCCACCGGAGAGATTCTTAGACTGCTCTGCAAATTTACCTTGATCAGCTGCTGCAAAAGAAGCTTTGGAGATGTAGGATTCCATCTGTTTTTCGGCACCAGCTTGTGAAGCTATGTTGGCCCCATCTTTAGTATTATCATTGGACGTATTAGATTGATCAGCAGATTTGGGGGCTTTATCAAAATTGGAGGACATTTTTGGGAAAGAATCCTTTCGAGAATTGGTATTAGTGGTGTTGTGATTAATGGTTGTGTCACCCTTCTCGTTCTGCGTAACAGGTTCACCCGAGAAATTCTCTTTGTTCCTTACATCATCTTCAGAAGATGATTCTGGATTTCGAATAGTCTCAACACTGTTCTCGAGAGTTGGAGAAGGAACGGTGTCTTTGTGGTTGATTCGAGAGGAGGAAAGGTTTCCATCGTGGTTGAATTGGGTTGCTCCGGTGATAGTCATCTCTTTGTTTGTTACAGTTGGGGGCTGAGTAAGGGTGGAGGTGCGGATATCAGGAGGGACAGGTGGTGGTCCGTTGGGCTCTGGCCCAAATAAATCGACCGTTAGCACAGGTTAGAGAGAGAAATAATTTAGAGAGAAGGCAGCGCATTTTGATTGTTCTTTAGAGAGATTTTCTCCTCTCCTTTTTGCGTGTGTGGATATATATACATATATATCTCGTACCGTCTGGTTTCTTTTGTTTTTATCTATAGCTTGCTGATTGTGTAAGTATATTTGTGGTATGTCTTAATGAGTTGGATTAAGACATAGGTATTCTATGCTGTATTGTTCTCTTGCTTTCTTCCTTCCGGAGAGGAATACAATCCTTTTGAAATGGTGAAAGAGTTTGGAAGACAGTTATTCATTGATTTCTCCTCCTTCACAGCATAAATCCCCCTGTATGTACATTAGGGTAGGTTCTGATCTTCTTTTTTTAGTTTGGGGTGTAGTGAGACCAGTCACTCCGTCAATCTAAAGATAAATGATCTCATATCAGGTTCTTGACTTAGAGTTGGAGCCTTTTAATTTTTTTCATTTATAGGTAGACTATGAAGAAACTTCAATAGAAATAAAAACCAAGGATTAAGAAGCACTGCTACAATCTTAATCCTACTCTAATAGTTCTTATTCAAAAGTTGCATGAGACAATTAGTACAAGGTTTCATGTATCAGCAACTAAGAATTAGCTCTAGAAACTTGTCAATGTCCACAAATTAGTTGGTGCTAGTTGGGGTAAAGTACCATATTTTCTGGATCTTTTTTATAATTTATTTAATACCGGACTATCCTACAAATTAACCGGGATTTCTGACTTGCGACACAAATTTGACTCTATTGCCAACCATTGCATCATGTTCTTCAACTTTGTAGATGAAGATATATAGTCATCTGTGATTATGCACCATTTTATTGTAGTTACTGTTTTTTAGGGAATGCTTTGCCATGCTTTTTATTGTATTTTTCCATGATTTATTCACTTCTGATTATTTCTTTTTTGATCTGCTTTAATATGCTTTTCAGTGAACTGAGGGTCTATCGAAAACAACCTCTCTACCCTCCCAAGTACCCCCCCCCCCCCCACCCACCCACCCCACCCACCCACTTGTGGAATTATATGTTGTTGTTGTAGTACTCATCTTTTAAGCATCTTATCATACTTCATGCATGTGCTTTTTGAACAAGTGTTGTTCTTTTCAGAGGATGGAAAGACGGGCAGTTTTGTCATAGGCGATGTGCACTTTCCTGCATCACTTTTGAATCTTCCTTGCATAGTGGAGTCGTACAAAACTTATGATGACAACGTGCTCATTAAATCCGCAGACATTGGTCAAGTAGGGTTAGGATTAATCTTTCTTTTTCCCTTCAGTTATATGAATATGATTTTTCAATCGTCATTGTTCCTAGAATGTAAACTTTGTTGATCTGACAGATGATTATGGTGAGAGAAGAAGGTGATCCTGTTCCAGATGTGGTGGAATATAGACATGGCCTCACACCTCCAATGAGAGATGCACGAAGACGAAGATTTCGGAGAGAGCCA</genome_strand>
        <mrna_strand>GTTGCTGAGCGAATTGACCGTCTTTTAAGTGAAAATTCTTCTTCAGAAGACAAACTGGACTTGTCTTTTTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGGAAAGACGGGCAGTTTTGTCATAGGCGACGAGCACTTTCCTGCATCACTTTTGAATCTTCCTTGCATAGTGGAGTCATACAAAACTTATGATGACAACGTGCTCATTAAATCCGCAGACATTGGTCAA..................................................................................................ATGATTATGGTGAGAGAAGAAGGGGATCCTGTTCCAGATGTGGTGGAATATAGACATGGCCTCACACCTCCAATGAGAGATGCACGAAGACGAAGATTTCGGAGAGAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605982" ref_strand="+" ref_description="SGN-E605982 [21915]">
      <seq>aggactaaactgagtttttccacatcattaacagcttacaccacagttgaagcccaaaattggtgctcaccctgaaaatatatgctcagacagtccaaaaagagctggttatcctatcaacaagaattgtttagaaagaagaacaatttccttttgatttgcgaagatgataatacaactaccataagaggcttcattttacatatcagctgacccttacttttcaagaaataagatatgaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="68428" stop="69271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68725" g_stop="68971" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-E605982" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68725" e_stop="68971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTAAACTGAG-TTTTCCACTTCATTAACAGCTTACACCACAGTTGAAGCCCAAAATTGGTGCTCACCCTGAAAATATATTGCTCAGACCGTCCAAAAAGAACTGGTTACCCTATCGACAAGAATTGTTTAGAAAGGAGTACAATTTCCTTTTGATTTGTGAAAGATGATAATACAACTACCATAAGAGGCTTCATTTTACATATCAGCTGACCCTTACTTTTCAAGAAATTAGATGTTGAACCA</genome_strand>
        <mrna_strand>AGGACTAAACTGAGTTTTTCCACATCATTAACAGCTTACACCACAGTTGAAGCCCAAAATTGGTGCTCACCCTGAAAATATAT-GCTCAGACAGTCCAAAAAGAGCTGGTTATCCTATCAACAAGAATTGTTTAGAAAGAAGAACAATTTCCTTTTGATTTGCG-AAGATGATAATACAACTACCATAAGAGGCTTCATTTTACATATCAGCTGACCCTTACTTTTCAAGAAATAAGAT-ATGAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585435" ref_strand="+" ref_description="SGN-E585435 [67895]">
      <seq>atatcgaccccccaaatttgcacctgcttctatgggtgaggagaagatgtcgaagcaggagagaaatgaattgaggagggaaaaagagagattgcgaaatgctaaacaaagcccgtatatgatagatttgttgaatgatcttgaaggaagacccgaagaggtaagagaagttgttggatctgaaagtagagaactcacaaagtacatggctaaaatggaagaacgtgcaaaaagagaagaggaggcgtttgatcgtgccccacttacaaaattggagaaaaagaaaatgaaacatctgaagaagtcaagaaatgggttgcttgggctgacagatagtttttatgatgagataaaaagtttgcctttaggggaacctgtttctgaacaatcagaaaactttgagaatggcggcactggaatcaaacaacagaagaagcgtaagaggaggaattgatatgactgctggtgtgagtacatcaaatccatcaatttagaggctttaagtgatgactgaagcctagatggataactgaaagttacttgctgcaaggctgaagtgctatggtggctgtggtttggttcatatcttatttcttgaaaagtaagggtcagctgatatgtaaaatgaagcctcttatggtagttgtattatcatcttcgcaaatcaaaaggaaatggttcctcctttctaaacaattcttgttgatagggtaaccagctctttttggacggtctgagcatatatttccagggtgagcaccaattttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="-" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="70722" stop="68475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70422" g_stop="70263" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70262" i_stop="70181" i_length="82">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70180" g_stop="70026" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="315" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70025" i_stop="69831" i_length="195">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69830" g_stop="69704" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="442" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69703" i_stop="69229" i_length="475">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69228" g_stop="69167" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="504" r_length="62" r_score="0.871"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69166" i_stop="69046" i_length="121">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.703" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69045" g_stop="68775" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="771" r_length="267" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="-" ref_id="SGN-E585435" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70422" e_stop="70263"/>
          <exon e_start="70180" e_stop="70026"/>
          <exon e_start="69830" e_stop="69704"/>
          <exon e_start="69228" e_stop="69167"/>
          <exon e_start="69045" e_stop="68775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCGACCCCCCAAATTTGCGCCTGCTTCTATGGGCGAGGAGAAAATGTCGAAGCAGGAGAGAAATGAATTGAGGAGGGAAAAAGAGAGATTGCGAAATGCTAAACAAAGCCCGTATATGATAGATTTGTTGAATGATCTTGAAGGAAGACCCGAAGAGGTAGTTCTCTATTTGACTATTTATACTAACTCACTTCCCTAAGCAATCGTGTATTGACTATTGATCACGGTGAAAAATACAGGTAAGAGAAGTTGTTGGATCTGAAAGTAGAGAACTCACAAACTACATGGCTAAAATGGAAGAACGTGCAAAAAGAGAAGAGGAGGCGTTTGATCGTGCCCCACTTACAAAATTGGAGAAAAAGAAAATGAAACATCTGAAGAAGTCAAGAAATGGGTAAGTTCAGTAGGAACTGTGTGGTTGATCTTACTAACTATAAAAAGAGTCAATTTACAGTCAGTCTTTTGATCATTTCAGATATGAACTTAATCTATAGTTTGGAAGGTACTGGAAGATTAGGTGGAGCTCTGATTTCTTTTCTTTTTAAAATGGACTAACTGGAGGCTAATCTCCTTTCTTTGATTGTGCTAGGTTGCTTGGGCTGACAGATAGTTTCTATGACGAGATAAAAAGTTTGCCTTTAGGGGAACCTGTTTCTGAACAATCAGAAAACTTTGAGAAAGGCGGCACTGAAATCAAACAACAGAAGAAGCGTAAGGTAATTTGTTTAGGGAGATTGCATTACTCCTTGGTTTGTTTTCTTTCAAAATCTGAAGTGTGGTTCTGCTTTAGAATATTATATATGAAATCTTGCATTAGCTATGATGTTGTCATTGTCCTAGACATATATAAATCTTGTGCATTCCCGTTTAGGTGATAAGCGATCTAGTTAATGCATAAAATGTTGATATTCTGGTATGGACACTTATTATCTTGTTTGTTACTCATCTCAATGATTTAATTGGAAGGAAATTGTTGGCTTATGATTTATGTGGTTATTTCCAATGCTTCACAACCCTTTGCTGCTTCTGAGTATAGCCTGTATAATGAACACAATCTTGTTCACAATTAGAATGGAGCTTATTTGTAGTAGTGGTTTATCTTTTGATCTATATCCCTTTGTTCATGGACATGAGTTTTATTTTGTGCGGGGAAATTGCTGAAAATAACTGTTAATATATGTGGTATTGCAGAGGAGGAATTGATATGACTG-AGGTTCGAGTACATCGATATCCACCAATTTAGAGGCTTTAAGGTTGGAACGGTTAGGTGTTCCTTGGTCTCACGTAACATGTGTACAACTTTGTCATGATATTAATTTTTGGGGCTTTCATCGCTCTAAAATCTTGCATCGTATTCATTATTGTTGTCAGCAGTGATGACTGAAACCTAGATGGATAATTGAAAGTTGCTTGCTGCAAGGCTGAAGTGCGCTATGGCGGCTGTGGTTTGGTTCAACATCTAATTTCTTGAAAAGTAAGGGTCAGCTGATATGTAAAATGAAGCCTCTTATGGTAGTTGTATTATCATCTTTCACAAATCAAAAGGAAATTG-TACTCCTTTCTAAACAATTCTTGTCGATAGGGTAACCAGTTCTTTTTGGACGGTCTGAGCAATATATTTTCAGGGTGAGCACCAATTTTGGGC</genome_strand>
        <mrna_strand>ATATCGACCCCCCAAATTTGCACCTGCTTCTATGGGTGAGGAGAAGATGTCGAAGCAGGAGAGAAATGAATTGAGGAGGGAAAAAGAGAGATTGCGAAATGCTAAACAAAGCCCGTATATGATAGATTTGTTGAATGATCTTGAAGGAAGACCCGAAGAG..................................................................................GTAAGAGAAGTTGTTGGATCTGAAAGTAGAGAACTCACAAAGTACATGGCTAAAATGGAAGAACGTGCAAAAAGAGAAGAGGAGGCGTTTGATCGTGCCCCACTTACAAAATTGGAGAAAAAGAAAATGAAACATCTGAAGAAGTCAAGAAATGG...................................................................................................................................................................................................GTTGCTTGGGCTGACAGATAGTTTTTATGATGAGATAAAAAGTTTGCCTTTAGGGGAACCTGTTTCTGAACAATCAGAAAACTTTGAGAATGGCGGCACTGGAATCAAACAACAGAAGAAGCGTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGAATTGATATGACTGCTGGTGTGAGTACATC-AAATCCATCAATTTAGAGGCTTTAAG.........................................................................................................................TGATGACTGAAGCCTAGATGGATAACTGAAAGTTACTTGCTGCAAGGCTGAAGT--GCTATGGTGGCTGTGGTTTGGTTC-ATATCTTATTTCTTGAAAAGTAAGGGTCAGCTGATATGTAAAATGAAGCCTCTTATGGTAGTTGTATTATCATC-TTCGCAAATCAAAAGGAAATGGTTCCTCCTTTCTAAACAATTCTTGTTGATAGGGTAACCAGCTCTTTTTGGACGGTCTGAGC-ATATATTTCCAGGGTGAGCACCAATTTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552457" ref_strand="+" ref_description="SGN-E552457 [cTSB-3-P23]">
      <seq>atatgtggtattgcagaggaggaattgatatgactgaggttcgagtacatcgatatccaccaatttagaggctttaaggttggaacggttaggtgttccttggtctcacgtaacatgtgtacaactttgtcatgatattaatttttggggctttcatcgctctaaaatcttgcatcgtattcattattgttgtcagcagtgatgactgaaacctagatggataattgaaagttgcttgctgcaaggctgaagtgcgctatggcggctgtggtttggttcaacatctaatttcttgaaaagtaagggtcagctgatatgtaaaatgaagcctcttatggtagttgtattatcatctttcacaaatcaaaaggaaattgtactcctttctaaacaattcttgtcgatagggtaaccagttctttttggacggtctgagcaatatattttcagggtgagcaccanaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="-" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="69544" stop="68484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69244" g_stop="68794" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="461" polyA_stop="485"/>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="-" ref_id="SGN-E552457" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69244" e_stop="68794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGTGGTATTGCAGAGGAGGAATTGATATGACTGAGGTTCGAGTACATCGATATCCACCAATTTAGAGGCTTTAAGGTTGGAACGGTTAGGTGTTCCTTGGTCTCACGTAACATGTGTACAACTTTGTCATGATATTAATTTTTGGGGCTTTCATCGCTCTAAAATCTTGCATCGTATTCATTATTGTTGTCAGCAGTGATGACTGAAACCTAGATGGATAATTGAAAGTTGCTTGCTGCAAGGCTGAAGTGCGCTATGGCGGCTGTGGTTTGGTTCAACATCTAATTTCTTGAAAAGTAAGGGTCAGCTGATATGTAAAATGAAGCCTCTTATGGTAGTTGTATTATCATCTTTCACAAATCAAAAGGAAATTGTACTCCTTTCTAAACAATTCTTGTCGATAGGGTAACCAGTTCTTTTTGGACGGTCTGAGCAATATATTTTCAGG</genome_strand>
        <mrna_strand>ATATGTGGTATTGCAGAGGAGGAATTGATATGACTGAGGTTCGAGTACATCGATATCCACCAATTTAGAGGCTTTAAGGTTGGAACGGTTAGGTGTTCCTTGGTCTCACGTAACATGTGTACAACTTTGTCATGATATTAATTTTTGGGGCTTTCATCGCTCTAAAATCTTGCATCGTATTCATTATTGTTGTCAGCAGTGATGACTGAAACCTAGATGGATAATTGAAAGTTGCTTGCTGCAAGGCTGAAGTGCGCTATGGCGGCTGTGGTTTGGTTCAACATCTAATTTCTTGAAAAGTAAGGGTCAGCTGATATGTAAAATGAAGCCTCTTATGGTAGTTGTATTATCATCTTTCACAAATCAAAAGGAAATTGTACTCCTTTCTAAACAATTCTTGTCGATAGGGTAACCAGTTCTTTTTGGACGGTCTGAGCAATATATTTTCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557045" ref_strand="+" ref_description="SGN-E557045 [cTSD-3-B21]">
      <seq>atatgtggtattgcagaggaggaattgatatgactgaggttcgagtacatcgatatccaccaatttagaggctttaaggttggaacggttaggtgttccttggtctcacgtaacatgtgtacaactttgtcatgatattaatttttggggctttcatcgctctaaaatcttgcatcgtattcattattgttgtcagcagtgatgactgaaacctagatggataattgaaagttgcttgctgcaaggctgaagtgcgctatggcggctgtggtttggttcaacatctaatttcttgaaaagtaagggtcagctgatatgtaaaatgaagcctcttatggtagttgtattatcatctttcacaaatcaaaaggaaattgtactcctttctaaacaattcttgtcgatagggtaaccagttctttttggacggtctgagcaatatattttcagggtgagcaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="-" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="69544" stop="68483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69244" g_stop="68794" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="461" polyA_stop="499"/>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="-" ref_id="SGN-E557045" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69244" e_stop="68794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGTGGTATTGCAGAGGAGGAATTGATATGACTGAGGTTCGAGTACATCGATATCCACCAATTTAGAGGCTTTAAGGTTGGAACGGTTAGGTGTTCCTTGGTCTCACGTAACATGTGTACAACTTTGTCATGATATTAATTTTTGGGGCTTTCATCGCTCTAAAATCTTGCATCGTATTCATTATTGTTGTCAGCAGTGATGACTGAAACCTAGATGGATAATTGAAAGTTGCTTGCTGCAAGGCTGAAGTGCGCTATGGCGGCTGTGGTTTGGTTCAACATCTAATTTCTTGAAAAGTAAGGGTCAGCTGATATGTAAAATGAAGCCTCTTATGGTAGTTGTATTATCATCTTTCACAAATCAAAAGGAAATTGTACTCCTTTCTAAACAATTCTTGTCGATAGGGTAACCAGTTCTTTTTGGACGGTCTGAGCAATATATTTTCAGG</genome_strand>
        <mrna_strand>ATATGTGGTATTGCAGAGGAGGAATTGATATGACTGAGGTTCGAGTACATCGATATCCACCAATTTAGAGGCTTTAAGGTTGGAACGGTTAGGTGTTCCTTGGTCTCACGTAACATGTGTACAACTTTGTCATGATATTAATTTTTGGGGCTTTCATCGCTCTAAAATCTTGCATCGTATTCATTATTGTTGTCAGCAGTGATGACTGAAACCTAGATGGATAATTGAAAGTTGCTTGCTGCAAGGCTGAAGTGCGCTATGGCGGCTGTGGTTTGGTTCAACATCTAATTTCTTGAAAAGTAAGGGTCAGCTGATATGTAAAATGAAGCCTCTTATGGTAGTTGTATTATCATCTTTCACAAATCAAAAGGAAATTGTACTCCTTTCTAAACAATTCTTGTCGATAGGGTAACCAGTTCTTTTTGGACGGTCTGAGCAATATATTTTCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>47</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="32332" PGL_stop="32851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32332" e_stop="32403"/>
            <exon e_start="32480" e_stop="32851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="0.972"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="32332" e_stop="32403" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="32404" i_stop="32479" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="32480" e_stop="32851" e_length="372"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32332" stop="32403"/>
              <exon start="32480" stop="32851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCTCCTTCACAACATCCCCTTCTGGTCGAACCCTCTTCCTTGCTGCAATTGGGTCAGCCACGTCAATCAG : AGAGTATCCGTGATGCTTATTCCGATAGGAGCTCAGAAGGAACCTCATCGCGCTTGGATTCCGTTTTCCGTTCTCTCCGGAGCAGTCGTCATGGCCAACGGTTCAATTTTTGGACCAATGATAACCAACAAAGCGGTGGATCAGGTGCCTCTGCTCTTCCACAGGGTTTTGAGGATTTGCTTGTTTCCCACTTGAGGCGGCCTAGCCCCGAGAAATCAGCTGATCAAGATGCTATAGAAGGGTCTCAGAATAGAGGTGAGGCCACCCAGTTCGCTGGATCAGGTGAAATGGCAGCTGAAAGTGCTATGGAGAACAATAACAACAATGAAGCCAGAGATGCCTCTACCCCCTCAACAGTGTTGGATGAATCTG</gDNA_template>
            <first_frame> L  L  L  H  N  I  P  F  W  S  N  P  L  P  C  C  N  W  V  S  H  V  N  Q  :  R  V  S  V  M  L  I  P  I  G  A  Q  K  E  P  H  R  A  W  I  P  F  S  V  L  S  G  A  V  V  M  A  N  G  S  I  F  G  P  M  I  T  N  K  A  V  D  Q  V  P  L  L  F  H  R  V  L  R  I  C  L  F  P  T  *  G  G  L  A  P  R  N  Q  L  I  K  M  L  *  K  G  L  R  I  E  V  R  P  P  S  S  L  D  Q  V  K  W  Q  L  K  V  L  W  R  T  I  T  T  M  K  P  E  M  P  L  P  P  Q  Q  C  W  M  N  L </first_frame>
            <second_frame>  C  S  F  T  T  S  P  S  G  R  T  L  F  L  A  A  I  G  S  A  T  S  I  R :   E  Y  P  *  C  L  F  R  *  E  L  R  R  N  L  I  A  L  G  F  R  F  P  F  S  P  E  Q  S  S  W  P  T  V  Q  F  L  D  Q  *  *  P  T  K  R  W  I  R  C  L  C  S  S  T  G  F  *  G  F  A  C  F  P  L  E  A  A  *  P  R  E  I  S  *  S  R  C  Y  R  R  V  S  E  *  R  *  G  H  P  V  R  W  I  R  *  N  G  S  *  K  C  Y  G  E  Q  *  Q  Q  *  S  Q  R  C  L  Y  P  L  N  S  V  G  *  I   </second_frame>
            <third_frame>   A  P  S  Q  H  P  L  L  V  E  P  S  S  L  L  Q  L  G  Q  P  R  Q  S   : E  S  I  R  D  A  Y  S  D  R  S  S  E  G  T  S  S  R  L  D  S  V  F  R  S  L  R  S  S  R  H  G  Q  R  F  N  F  W  T  N  D  N  Q  Q  S  G  G  S  G  A  S  A  L  P  Q  G  F  E  D  L  L  V  S  H  L  R  R  P  S  P  E  K  S  A  D  Q  D  A  I  E  G  S  Q  N  R  G  E  A  T  Q  F  A  G  S  G  E  M  A  A  E  S  A  M  E  N  N  N  N  N  E  A  R  D  A  S  T  P  S  T  V  L  D  E  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053M02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32334" stop="32403"/>
                    <exon start="32480" stop="32850"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APSQHPLLVEPSSLLQLGQPRQSESIRDAYSDRSSEGTSSRLDSVFRSLRSSRHGQRFNFWTNDNQQSGGSGASALPQGFEDLLVSHLRRPSPEKSADQDAIEGSQNRGEATQFAGSGEMAAESAMENNNNNEARDASTPSTVLDES</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="32991" PGL_stop="39789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32991" e_stop="33543"/>
            <exon e_start="33716" e_stop="34000"/>
            <exon e_start="34079" e_stop="34283"/>
            <exon e_start="34399" e_stop="34670"/>
            <exon e_start="34757" e_stop="35031"/>
            <exon e_start="35472" e_stop="36591"/>
            <exon e_start="36675" e_stop="36821"/>
            <exon e_start="36896" e_stop="36976"/>
            <exon e_start="37053" e_stop="37278"/>
            <exon e_start="37395" e_stop="37534"/>
            <exon e_start="37618" e_stop="37724"/>
            <exon e_start="38169" e_stop="38453"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.975"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="0.993"/>
          <exon-intron don_prob="0.974" acc_prob="0.977" e_score="0.995"/>
          <exon-intron don_prob="0.818" acc_prob="0.939" e_score="0.993"/>
          <exon-intron don_prob="0.990" acc_prob="0.966" e_score="0.960"/>
          <exon-intron don_prob="0.926" acc_prob="0.999" e_score="0.970"/>
          <exon-intron don_prob="0.980" acc_prob="0.995" e_score="0.993"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="0.990"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="32991" e_stop="33543" e_length="553"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33544" i_stop="33715" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="33716" e_stop="34000" e_length="285"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="34001" i_stop="34078" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="34079" e_stop="34283" e_length="205"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.977">
            <gDNA_intron_boundary i_start="34284" i_stop="34398" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="34399" e_stop="34670" e_length="272"/>
          </exon>
          <intron i_serial="4" don_prob="0.818" acc_prob="0.939">
            <gDNA_intron_boundary i_start="34671" i_stop="34756" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="0.960">
            <gDNA_exon_boundary e_start="34757" e_stop="35031" e_length="275"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.966">
            <gDNA_intron_boundary i_start="35032" i_stop="35471" i_length="440"/>
          </intron>
          <exon e_serial="6" e_score="0.970">
            <gDNA_exon_boundary e_start="35472" e_stop="36591" e_length="1120"/>
          </exon>
          <intron i_serial="6" don_prob="0.926" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36592" i_stop="36674" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="36675" e_stop="36821" e_length="147"/>
          </exon>
          <intron i_serial="7" don_prob="0.980" acc_prob="0.995">
            <gDNA_intron_boundary i_start="36822" i_stop="36895" i_length="74"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="36896" e_stop="36976" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36977" i_stop="37052" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="0.990">
            <gDNA_exon_boundary e_start="37053" e_stop="37278" e_length="226"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="37279" i_stop="37394" i_length="116"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="37395" e_stop="37534" e_length="140"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37535" i_stop="37617" i_length="83"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="37618" e_stop="37724" e_length="107"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37725" i_stop="38168" i_length="444"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="38169" e_stop="38453" e_length="285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32991" stop="33543"/>
              <exon start="33716" stop="33909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33247" stop="33543"/>
              <exon start="33716" stop="33958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33433" stop="33543"/>
              <exon start="33716" stop="34000"/>
              <exon start="34079" stop="34283"/>
              <exon start="34399" stop="34670"/>
              <exon start="34757" stop="34764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34425" stop="34670"/>
              <exon start="34757" stop="35031"/>
              <exon start="35472" stop="35661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34425" stop="34670"/>
              <exon start="34757" stop="35031"/>
              <exon start="35472" stop="35605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34823" stop="35031"/>
              <exon start="35472" stop="36011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34826" stop="35031"/>
              <exon start="35472" stop="35741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35814" stop="36280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35881" stop="36441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35922" stop="36556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35959" stop="36396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35992" stop="36591"/>
              <exon start="36675" stop="36795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36050" stop="36591"/>
              <exon start="36675" stop="36793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36086" stop="36591"/>
              <exon start="36675" stop="36794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36165" stop="36591"/>
              <exon start="36675" stop="36745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36291" stop="36591"/>
              <exon start="36675" stop="36821"/>
              <exon start="36896" stop="36927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36318" stop="36591"/>
              <exon start="36675" stop="36821"/>
              <exon start="36896" stop="36976"/>
              <exon start="37053" stop="37226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36404" stop="36591"/>
              <exon start="36675" stop="36821"/>
              <exon start="36896" stop="36976"/>
              <exon start="37053" stop="37184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36454" stop="36591"/>
              <exon start="36675" stop="36821"/>
              <exon start="36896" stop="36976"/>
              <exon start="37053" stop="37278"/>
              <exon start="37395" stop="37454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36454" stop="36591"/>
              <exon start="36675" stop="36821"/>
              <exon start="36896" stop="36976"/>
              <exon start="37053" stop="37184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36463" stop="36591"/>
              <exon start="36675" stop="36821"/>
              <exon start="36896" stop="36976"/>
              <exon start="37053" stop="37256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36518" stop="36591"/>
              <exon start="36675" stop="36821"/>
              <exon start="36896" stop="36976"/>
              <exon start="37053" stop="37278"/>
              <exon start="37395" stop="37534"/>
              <exon start="37618" stop="37704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36535" stop="36591"/>
              <exon start="36675" stop="36821"/>
              <exon start="36896" stop="36976"/>
              <exon start="37053" stop="37278"/>
              <exon start="37395" stop="37450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36909" stop="36976"/>
              <exon start="37053" stop="37278"/>
              <exon start="37395" stop="37534"/>
              <exon start="37618" stop="37724"/>
              <exon start="38169" stop="38375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600248" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37154" stop="37278"/>
              <exon start="37395" stop="37534"/>
              <exon start="37618" stop="37724"/>
              <exon start="38169" stop="38438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37164" stop="37278"/>
              <exon start="37395" stop="37534"/>
              <exon start="37618" stop="37724"/>
              <exon start="38169" stop="38382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37226" stop="37278"/>
              <exon start="37395" stop="37534"/>
              <exon start="37618" stop="37724"/>
              <exon start="38169" stop="38453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414391" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37226" stop="37278"/>
              <exon start="37395" stop="37534"/>
              <exon start="37618" stop="37724"/>
              <exon start="38169" stop="38436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425118" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37465" stop="37534"/>
              <exon start="37618" stop="37724"/>
              <exon start="38169" stop="38289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37681" stop="37724"/>
              <exon start="38169" stop="38441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38262" stop="38453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607993" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTGGAAGTGGTGCAACTCTAGGTGAAAGTCTTCGAAGTCTTGATGTTGAAATTGGAAGTGCTGATGGGCATGATGATGGTGGAGATAGGCAAGGTTCAGCAGATGCTAGAACTAGGAGGACTAACGTATCGTTTGGAAATTCTACTCAGGTAAGTGCGAGAGATGTTGCCCTTCACAGTGTATCTGAAGCTTCAGAACATCCAAATCAAGAAGCAGAACAAGGTGGACCCAATGATGAACAGCAACGTAATGTAGATGCTGATTCTGGATCAATTGATCCTGCATTTCTTGAGGCGCTTCCTGAGGAGTTGCGAGCCGAGGTTCTCTCAGCTCAACAGGGTCAAGCAACTCAACCACCAAATTCTGAGCCTCAAAATGGTGGAGATATTGATCCAGAATTTCTGGCAGCCCTTCCGTCTGACATCAGAGAAGAAGTGTTGGCACAGCAAAGGGCACAGCGGCTGCAGCAGTCACAAGAATTAGAAGGCCAGCCTGTTGAGATGGACACTGTGTCAATTATTGCTACATTCCCTTCAGAACTACGGGAAGAG : GTCCTTCTGACATCTTCTGATGCCATTCTTGCTAATTTAACACCTGCTCTTGTGGCGGAAGCAAATATGTTGCGTGAGAGATTTGCACGTAGGTATAACCGAACACTTTTTGGTATGTATCCTAGAAACCGTAGAGGCGACTCTAGGCGGAATGAACAATTGGACAGGGCTGGTGGAACCCTTTCACGTAGATCAGCCGGAAGTAAGCCTCTGGAGGCTGATGGGTCTCCCTTAGTTGACACTGAGGGTTTAAGAGCTTTGGTGAGGTTGCTCCGCGTATTCCAG : CCAATATACAAAGTTCCTCTACAGAGGCTGATGTTGAATCTCAGTGCACATGCTGAAACAAGAACTGCTTTAGTGAAAATATTTATGGACTTGTTGATGCTTGATGTCGGACAGCCTGCTACTGATCTGAATACTGCTGAACCCCCATATCGACTATATGGTTGCCAAAGTAATGTGATGTATTCACGTCCTCAACATCTTGATG : GAATTCCTCCATTACTATCTCGTCGTGTTCTTGAGACACTTACATACCTGGCAAAGAACCATTCTTTAGTTGCAAAGACTCTACTTGAATTCAGGCTCCCTCGACCAGTGCTGGAAGGGCCAATAGTTCCGGATCAGAGGCGGGGAAAAGCTGTTATGGTTGAGGCTGATGGACCAGATAGATGGCAGCTTGAAGGACAAGTATCTCTGGCATTGCTTTTGGGCCTCTTGAACCATCCCCTTTATTTGAGAAGTGTTGCACATCTTGAGCAG : CTGTTAAATCTGCTAGATGTTGTAGTCCAAAACACAGAAAGCAAATCAAATGCGCGTGAAGAACCTGGCACATCCTCTACAGAGCAACTGCCTGGTCCTCCAGTCCAATCTGCTGCTGAAATGAATACTGAATCTCATGCAGCTTCATCTGAGGTTGAGGACAAATCTGGAGCATCGTCCTCTATCACAGGCAGAGACCAAAGTACTGAAAGTATTCTACTCAGTCTACCACAATTAGAACTTCGACGTCTGTGCTCATTGCTTGCCAGAGAAGG : TCTTTCAGACAATGCTTACTCTTTGGTAGCTGAGGTACTGAAAAAGTTGGTGGCCATAGCTCCTGCCATTTGTCATTTATTTATTACTGAGCTTGCTGGCTCGGTGCAAAGTCTGACCAGATCTGCGATGGATGAGCTAAACAAGTTTAGGGAAGTGGAAAAAGCACTGCTCAGTACCACTTCAACTGATGGCGCTGTGATACTCAGGGTTTTACAAGCATTAAGCTCTCTTGTTGCTTCAATTGGTGACAAGAACAACGAGAATCAAATTATTTCTGAGAAGGAGCACGGTGTTACTATCTCCCTGGTTTGGGACATTAACACAGCTCTAGAACCTCTATGGCAGGAGCTGAGCACTTGCATTAGCACAATGGAGAGTTTTTCAGAAACAGCACCCAACCTGCCTCAATCATCTATTGTTACCTCATCTAAACCTGCTGGAGCAATGTCTTCGCTTCCTGCAGGCTCACAAAACATTTTACCGTACGTAGAGTCCTTTTTTGTGATGTGTGAGAAGTTGCATCCTGGGCATTTGGGTGCAGGACAGGAGTTCAGTATTGCGACAGTTCCTGATCCAGAAGAGGCTACTGCTTCTGCTATGCAGCCAAAAACACCTACATCTGCAACAAAAGTTGATGAGAAGCACATTGCTTTTGTAAAATTTGCAGAGAAGCACAAAAAACTTCTTAATGCTTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCGATCATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCCTACTTCAGATCTAAGATTAAACATCAACATGATCATCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTACATTTCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTT : GTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAG : AATGACATCAGTGATATTTTAGACCTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAG : GTGACTGATTATGAACTAATCCCAGGTGGACGAAATATCAGAGTCACGGAGGAAAATAAGCAACAGTATGTCGACTTGGTTGCTGAGCATCGGTTGACGACTGCTATCCGTCCTCAGATAAATGCATTTTTGGAAGGATTCAGTGAATTGATTCCGCGAGAGCTGATCTCTATTTTTCATGACAAGGAACTTGAGTTGTTAATTAGCGGTCTTCCAGACATCGATC : TTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGGTTCACCTGTTATTCAGTGGTTTTGGGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAG : GTGCCATTGGAAGGGTTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTATGGCAGTGCTGATCACCTGCCTTCAGCACATACATG : TTTCAACCAGTTGGATCTACCAGAGTATCCCTCCAAAGAGCATCTAGAGGAGAGACTACTGCTTGCCATTCATGAAGCTAACGAAGGATTTGGATTTGGTTAAAACAACAATGGGTGGTCTGAATTAGATTCTGTAGATAATTTCCATGTTAAAAAAGAGAGTTTTTTTTTTATATATACAGGAGAACAGTCTAAGGGCATTTTAAGTCTGTGAGATACCTGTCTATAATGCTGTACAGTCTATTTGCTATGCGAAATGATCCTGGCAGTTCTTTTTTTTTGGCA</gDNA_template>
            <first_frame> Q  W  K  W  C  N  S  R  *  K  S  S  K  S  *  C  *  N  W  K  C  *  W  A  *  *  W  W  R  *  A  R  F  S  R  C  *  N  *  E  D  *  R  I  V  W  K  F  Y  S  G  K  C  E  R  C  C  P  S  Q  C  I  *  S  F  R  T  S  K  S  R  S  R  T  R  W  T  Q  *  *  T  A  T  *  C  R  C  *  F  W  I  N  *  S  C  I  S  *  G  A  S  *  G  V  A  S  R  G  S  L  S  S  T  G  S  S  N  S  T  T  K  F  *  A  S  K  W  W  R  Y  *  S  R  I  S  G  S  P  S  V  *  H  Q  R  R  S  V  G  T  A  K  G  T  A  A  A  A  V  T  R  I  R  R  P  A  C  *  D  G  H  C  V  N  Y  C  Y  I  P  F  R  T  T  G  R   : G  P  S  D  I  F  *  C  H  S  C  *  F  N  T  C  S  C  G  G  S  K  Y  V  A  *  E  I  C  T  *  V  *  P  N  T  F  W  Y  V  S  *  K  P  *  R  R  L  *  A  E  *  T  I  G  Q  G  W  W  N  P  F  T  *  I  S  R  K  *  A  S  G  G  *  W  V  S  L  S  *  H  *  G  F  K  S  F  G  E  V  A  P  R  I  P   : A  N  I  Q  S  S  S  T  E  A  D  V  E  S  Q  C  T  C  *  N  K  N  C  F  S  E  N  I  Y  G  L  V  D  A  *  C  R  T  A  C  Y  *  S  E  Y  C  *  T  P  I  S  T  I  W  L  P  K  *  C  D  V  F  T  S  S  T  S  *  W :   N  S  S  I  T  I  S  S  C  S  *  D  T  Y  I  P  G  K  E  P  F  F  S  C  K  D  S  T  *  I  Q  A  P  S  T  S  A  G  R  A  N  S  S  G  S  E  A  G  K  S  C  Y  G  *  G  *  W  T  R  *  M  A  A  *  R  T  S  I  S  G  I  A  F  G  P  L  E  P  S  P  L  F  E  K  C  C  T  S  *  A   : A  V  K  S  A  R  C  C  S  P  K  H  R  K  Q  I  K  C  A  *  R  T  W  H  I  L  Y  R  A  T  A  W  S  S  S  P  I  C  C  *  N  E  Y  *  I  S  C  S  F  I  *  G  *  G  Q  I  W  S  I  V  L  Y  H  R  Q  R  P  K  Y  *  K  Y  S  T  Q  S  T  T  I  R  T  S  T  S  V  L  I  A  C  Q  R  R  :  S  F  R  Q  C  L  L  F  G  S  *  G  T  E  K  V  G  G  H  S  S  C  H  L  S  F  I  Y  Y  *  A  C  W  L  G  A  K  S  D  Q  I  C  D  G  *  A  K  Q  V  *  G  S  G  K  S  T  A  Q  Y  H  F  N  *  W  R  C  D  T  Q  G  F  T  S  I  K  L  S  C  C  F  N  W  *  Q  E  Q  R  E  S  N  Y  F  *  E  G  A  R  C  Y  Y  L  P  G  L  G  H  *  H  S  S  R  T  S  M  A  G  A  E  H  L  H  *  H  N  G  E  F  F  R  N  S  T  Q  P  A  S  I  I  Y  C  Y  L  I  *  T  C  W  S  N  V  F  A  S  C  R  L  T  K  H  F  T  V  R  R  V  L  F  C  D  V  *  E  V  A  S  W  A  F  G  C  R  T  G  V  Q  Y  C  D  S  S  *  S  R  R  G  Y  C  F  C  Y  A  A  K  N  T  Y  I  C  N  K  S  *  *  E  A  H  C  F  C  K  I  C  R  E  A  Q  K  T  S  *  C  F  C  S  A  E  S  W  T  T  G  E  V  F  L  D  H  A  E  G  S  S  F  C  *  F  *  Q  *  K  V  L  L  Q  I  *  D  *  T  S  T  *  S  S  S  Q  S  S  E  N  F  C  E  K  S  L  Y  T  *  R  F  I  *  S  A  A  H  E  D  N  S  R  I  E  R  E  I  D  C  T  F  P  R  G  R  R  N  *  C  W  W  T  Y  *  G  M  V  S  V  I  V  Q  S  N  F  *  Q  G  S  A  I  V  Y  Y  S  W  Q  *  S  N  I  S  A  K  S  Q  L  C  V  P  N  *  A  P  L  I  L  Q  I  C  W  A  S   : C  W  E  G  T  I  *  R  P  T  S  *  C  S  F  Y  T  V  L  L  Q  A  H  T  W  C  *  S  D  I  S  *  Y  R  S  Y  *  S  *  L  L  Q  K  F  E  M  A  A  *   : E  *  H  Q  *  Y  F  R  P  Y  I  Q  Y  *  C  *  *  R  E  V  D  T  L  *  T  Q  *   : G  D  *  L  *  T  N  P  R  W  T  K  Y  Q  S  H  G  G  K  *  A  T  V  C  R  L  G  C  *  A  S  V  D  D  C  Y  P  S  S  D  K  C  I  F  G  R  I  Q  *  I  D  S  A  R  A  D  L  Y  F  S  *  Q  G  T  *  V  V  N  *  R  S  S  R  H  R  S :   *  *  L  K  G  K  Y  R  I  F  W  I  Q  P  R  F  T  C  Y  S  V  V  L  G  S  C  S  S  F  *  Q  G  R  Q  S  S  P  S  S  I  C  H  W  N  L  K   : G  A  I  G  R  V  *  C  T  A  R  N  F  R  F  P  E  I  S  D  P  Q  S  L  W  Q  C  *  S  P  A  F  S  T  Y  M  :  F  Q  P  V  G  S  T  R  V  S  L  Q  R  A  S  R  G  E  T  T  A  C  H  S  *  S  *  R  R  I  W  I  W  L  K  Q  Q  W  V  V  *  I  R  F  C  R  *  F  P  C  *  K  R  E  F  F  F  Y  I  Y  R  R  T  V  *  G  H  F  K  S  V  R  Y  L  S  I  M  L  Y  S  L  F  A  M  R  N  D  P  G  S  S  F  F  L  A </first_frame>
            <second_frame>  S  G  S  G  A  T  L  G  E  S  L  R  S  L  D  V  E  I  G  S  A  D  G  H  D  D  G  G  D  R  Q  G  S  A  D  A  R  T  R  R  T  N  V  S  F  G  N  S  T  Q  V  S  A  R  D  V  A  L  H  S  V  S  E  A  S  E  H  P  N  Q  E  A  E  Q  G  G  P  N  D  E  Q  Q  R  N  V  D  A  D  S  G  S  I  D  P  A  F  L  E  A  L  P  E  E  L  R  A  E  V  L  S  A  Q  Q  G  Q  A  T  Q  P  P  N  S  E  P  Q  N  G  G  D  I  D  P  E  F  L  A  A  L  P  S  D  I  R  E  E  V  L  A  Q  Q  R  A  Q  R  L  Q  Q  S  Q  E  L  E  G  Q  P  V  E  M  D  T  V  S  I  I  A  T  F  P  S  E  L  R  E  E  :  V  L  L  T  S  S  D  A  I  L  A  N  L  T  P  A  L  V  A  E  A  N  M  L  R  E  R  F  A  R  R  Y  N  R  T  L  F  G  M  Y  P  R  N  R  R  G  D  S  R  R  N  E  Q  L  D  R  A  G  G  T  L  S  R  R  S  A  G  S  K  P  L  E  A  D  G  S  P  L  V  D  T  E  G  L  R  A  L  V  R  L  L  R  V  F  Q  :  P  I  Y  K  V  P  L  Q  R  L  M  L  N  L  S  A  H  A  E  T  R  T  A  L  V  K  I  F  M  D  L  L  M  L  D  V  G  Q  P  A  T  D  L  N  T  A  E  P  P  Y  R  L  Y  G  C  Q  S  N  V  M  Y  S  R  P  Q  H  L  D   : G  I  P  P  L  L  S  R  R  V  L  E  T  L  T  Y  L  A  K  N  H  S  L  V  A  K  T  L  L  E  F  R  L  P  R  P  V  L  E  G  P  I  V  P  D  Q  R  R  G  K  A  V  M  V  E  A  D  G  P  D  R  W  Q  L  E  G  Q  V  S  L  A  L  L  L  G  L  L  N  H  P  L  Y  L  R  S  V  A  H  L  E  Q  :  L  L  N  L  L  D  V  V  V  Q  N  T  E  S  K  S  N  A  R  E  E  P  G  T  S  S  T  E  Q  L  P  G  P  P  V  Q  S  A  A  E  M  N  T  E  S  H  A  A  S  S  E  V  E  D  K  S  G  A  S  S  S  I  T  G  R  D  Q  S  T  E  S  I  L  L  S  L  P  Q  L  E  L  R  R  L  C  S  L  L  A  R  E  G :   L  S  D  N  A  Y  S  L  V  A  E  V  L  K  K  L  V  A  I  A  P  A  I  C  H  L  F  I  T  E  L  A  G  S  V  Q  S  L  T  R  S  A  M  D  E  L  N  K  F  R  E  V  E  K  A  L  L  S  T  T  S  T  D  G  A  V  I  L  R  V  L  Q  A  L  S  S  L  V  A  S  I  G  D  K  N  N  E  N  Q  I  I  S  E  K  E  H  G  V  T  I  S  L  V  W  D  I  N  T  A  L  E  P  L  W  Q  E  L  S  T  C  I  S  T  M  E  S  F  S  E  T  A  P  N  L  P  Q  S  S  I  V  T  S  S  K  P  A  G  A  M  S  S  L  P  A  G  S  Q  N  I  L  P  Y  V  E  S  F  F  V  M  C  E  K  L  H  P  G  H  L  G  A  G  Q  E  F  S  I  A  T  V  P  D  P  E  E  A  T  A  S  A  M  Q  P  K  T  P  T  S  A  T  K  V  D  E  K  H  I  A  F  V  K  F  A  E  K  H  K  K  L  L  N  A  F  V  R  Q  N  P  G  L  L  E  K  S  F  S  I  M  L  K  V  P  R  F  V  D  F  D  N  K  R  S  Y  F  R  S  K  I  K  H  Q  H  D  H  H  H  S  P  L  R  I  S  V  R  R  A  Y  I  L  E  D  S  Y  N  Q  L  R  M  R  T  T  Q  E  L  K  G  R  L  T  V  H  F  Q  G  E  E  G  I  D  A  G  G  L  T  R  E  W  Y  Q  L  L  S  R  V  I  F  D  K  G  A  L  L  F  T  T  V  G  N  E  A  T  F  Q  P  N  P  N  S  V  Y  Q  T  E  H  L  S  Y  F  K  F  V  G  R  V  :  V  G  K  A  L  F  D  G  Q  L  L  D  V  H  F  T  R  S  F  Y  K  H  I  L  G  A  K  V  T  Y  H  D  I  E  A  I  D  P  D  Y  F  K  N  L  K  W  L  L  E  :  N  D  I  S  D  I  L  D  L  T  F  S  I  D  A  D  E  E  K  L  I  L  Y  E  R  N  E  :  V  T  D  Y  E  L  I  P  G  G  R  N  I  R  V  T  E  E  N  K  Q  Q  Y  V  D  L  V  A  E  H  R  L  T  T  A  I  R  P  Q  I  N  A  F  L  E  G  F  S  E  L  I  P  R  E  L  I  S  I  F  H  D  K  E  L  E  L  L  I  S  G  L  P  D  I  D   : L  D  D  L  R  A  N  T  E  Y  S  G  Y  S  P  G  S  P  V  I  Q  W  F  W  E  V  V  Q  A  F  S  K  E  D  K  A  R  L  L  Q  F  V  T  G  T  S  K  :  V  P  L  E  G  F  S  A  L  Q  G  I  S  G  S  Q  K  F  Q  I  H  K  A  Y  G  S  A  D  H  L  P  S  A  H  T  C :   F  N  Q  L  D  L  P  E  Y  P  S  K  E  H  L  E  E  R  L  L  L  A  I  H  E  A  N  E  G  F  G  F  G  *  N  N  N  G  W  S  E  L  D  S  V  D  N  F  H  V  K  K  E  S  F  F  F  I  Y  T  G  E  Q  S  K  G  I  L  S  L  *  D  T  C  L  *  C  C  T  V  Y  L  L  C  E  M  I  L  A  V  L  F  F  W   </second_frame>
            <third_frame>   V  E  V  V  Q  L  *  V  K  V  F  E  V  L  M  L  K  L  E  V  L  M  G  M  M  M  V  E  I  G  K  V  Q  Q  M  L  E  L  G  G  L  T  Y  R  L  E  I  L  L  R  *  V  R  E  M  L  P  F  T  V  Y  L  K  L  Q  N  I  Q  I  K  K  Q  N  K  V  D  P  M  M  N  S  N  V  M  *  M  L  I  L  D  Q  L  I  L  H  F  L  R  R  F  L  R  S  C  E  P  R  F  S  Q  L  N  R  V  K  Q  L  N  H  Q  I  L  S  L  K  M  V  E  I  L  I  Q  N  F  W  Q  P  F  R  L  T  S  E  K  K  C  W  H  S  K  G  H  S  G  C  S  S  H  K  N  *  K  A  S  L  L  R  W  T  L  C  Q  L  L  L  H  S  L  Q  N  Y  G  K  R :   S  F  *  H  L  L  M  P  F  L  L  I  *  H  L  L  L  W  R  K  Q  I  C  C  V  R  D  L  H  V  G  I  T  E  H  F  L  V  C  I  L  E  T  V  E  A  T  L  G  G  M  N  N  W  T  G  L  V  E  P  F  H  V  D  Q  P  E  V  S  L  W  R  L  M  G  L  P  *  L  T  L  R  V  *  E  L  W  *  G  C  S  A  Y  S  S :   Q  Y  T  K  F  L  Y  R  G  *  C  *  I  S  V  H  M  L  K  Q  E  L  L  *  *  K  Y  L  W  T  C  *  C  L  M  S  D  S  L  L  L  I  *  I  L  L  N  P  H  I  D  Y  M  V  A  K  V  M  *  C  I  H  V  L  N  I  L  M  :  E  F  L  H  Y  Y  L  V  V  F  L  R  H  L  H  T  W  Q  R  T  I  L  *  L  Q  R  L  Y  L  N  S  G  S  L  D  Q  C  W  K  G  Q  *  F  R  I  R  G  G  E  K  L  L  W  L  R  L  M  D  Q  I  D  G  S  L  K  D  K  Y  L  W  H  C  F  W  A  S  *  T  I  P  F  I  *  E  V  L  H  I  L  S  S :   C  *  I  C  *  M  L  *  S  K  T  Q  K  A  N  Q  M  R  V  K  N  L  A  H  P  L  Q  S  N  C  L  V  L  Q  S  N  L  L  L  K  *  I  L  N  L  M  Q  L  H  L  R  L  R  T  N  L  E  H  R  P  L  S  Q  A  E  T  K  V  L  K  V  F  Y  S  V  Y  H  N  *  N  F  D  V  C  A  H  C  L  P  E  K   : V  F  Q  T  M  L  T  L  W  *  L  R  Y  *  K  S  W  W  P  *  L  L  P  F  V  I  Y  L  L  L  S  L  L  A  R  C  K  V  *  P  D  L  R  W  M  S  *  T  S  L  G  K  W  K  K  H  C  S  V  P  L  Q  L  M  A  L  *  Y  S  G  F  Y  K  H  *  A  L  L  L  L  Q  L  V  T  R  T  T  R  I  K  L  F  L  R  R  S  T  V  L  L  S  P  W  F  G  T  L  T  Q  L  *  N  L  Y  G  R  S  *  A  L  A  L  A  Q  W  R  V  F  Q  K  Q  H  P  T  C  L  N  H  L  L  L  P  H  L  N  L  L  E  Q  C  L  R  F  L  Q  A  H  K  T  F  Y  R  T  *  S  P  F  L  *  C  V  R  S  C  I  L  G  I  W  V  Q  D  R  S  S  V  L  R  Q  F  L  I  Q  K  R  L  L  L  L  L  C  S  Q  K  H  L  H  L  Q  Q  K  L  M  R  S  T  L  L  L  *  N  L  Q  R  S  T  K  N  F  L  M  L  L  F  G  R  I  L  D  Y  W  R  S  L  S  R  S  C  *  R  F  L  V  L  L  I  L  T  I  K  G  P  T  S  D  L  R  L  N  I  N  M  I  I  I  T  V  L  *  E  F  L  *  E  E  L  I  Y  L  K  I  H  I  I  S  C  A  *  G  Q  L  K  N  *  K  G  D  *  L  Y  I  S  K  G  K  K  E  L  M  L  V  D  L  L  G  N  G  I  S  Y  C  P  E  *  F  L  T  R  E  R  Y  C  L  L  Q  L  A  M  K  Q  H  F  S  Q  I  P  T  L  C  T  K  L  S  T  S  H  T  S  N  L  L  G  E  L :   L  G  R  H  Y  L  T  A  N  F  L  M  F  I  L  H  G  P  S  T  S  T  Y  L  V  L  K  *  H  I  M  I  S  K  L  L  I  L  T  T  S  K  I  *  N  G  C  L  R :   M  T  S  V  I  F  *  T  L  H  S  V  L  M  L  M  K  R  S  *  Y  F  M  N  A  M  R :   *  L  I  M  N  *  S  Q  V  D  E  I  S  E  S  R  R  K  I  S  N  S  M  S  T  W  L  L  S  I  G  *  R  L  L  S  V  L  R  *  M  H  F  W  K  D  S  V  N  *  F  R  E  S  *  S  L  F  F  M  T  R  N  L  S  C  *  L  A  V  F  Q  T  S  I  :  L  M  T  *  G  Q  I  Q  N  I  L  D  T  A  Q  V  H  L  L  F  S  G  F  G  K  L  F  K  L  L  A  R  K  T  K  L  A  F  F  N  L  S  L  E  P  Q  R :   C  H  W  K  G  L  V  H  C  K  E  F  Q  V  P  R  N  F  R  S  T  K  L  M  A  V  L  I  T  C  L  Q  H  I  H   : V  S  T  S  W  I  Y  Q  S  I  P  P  K  S  I  *  R  R  D  Y  C  L  P  F  M  K  L  T  K  D  L  D  L  V  K  T  T  M  G  G  L  N  *  I  L  *  I  I  S  M  L  K  K  R  V  F  F  L  Y  I  Q  E  N  S  L  R  A  F  *  V  C  E  I  P  V  Y  N  A  V  Q  S  I  C  Y  A  K  *  S  W  Q  F  F  F  F  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053M02.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32992" stop="33543"/>
                    <exon start="33716" stop="34000"/>
                    <exon start="34079" stop="34283"/>
                    <exon start="34399" stop="34670"/>
                    <exon start="34757" stop="35031"/>
                    <exon start="35472" stop="36591"/>
                    <exon start="36675" stop="36821"/>
                    <exon start="36896" stop="36976"/>
                    <exon start="37053" stop="37278"/>
                    <exon start="37395" stop="37534"/>
                    <exon start="37618" stop="37724"/>
                    <exon start="38169" stop="38271"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>3510</number_coding_nucleotides>
                  <number_encoded_amino_acids>1170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGSGATLGESLRSLDVEIGSADGHDDGGDRQGSADARTRRTNVSFGNSTQVSARDVALHSVSEASEHPNQEAEQGGPNDEQQRNVDADSGSIDPAFLEALPEELRAEVLSAQQGQATQPPNSEPQNGGDIDPEFLAALPSDIREEVLAQQRAQRLQQSQELEGQPVEMDTVSIIATFPSELREEVLLTSSDAILANLTPALVAEANMLRERFARRYNRTLFGMYPRNRRGDSRRNEQLDRAGGTLSRRSAGSKPLEADGSPLVDTEGLRALVRLLRVFQPIYKVPLQRLMLNLSAHAETRTALVKIFMDLLMLDVGQPATDLNTAEPPYRLYGCQSNVMYSRPQHLDGIPPLLSRRVLETLTYLAKNHSLVAKTLLEFRLPRPVLEGPIVPDQRRGKAVMVEADGPDRWQLEGQVSLALLLGLLNHPLYLRSVAHLEQLLNLLDVVVQNTESKSNAREEPGTSSTEQLPGPPVQSAAEMNTESHAASSEVEDKSGASSSITGRDQSTESILLSLPQLELRRLCSLLAREGLSDNAYSLVAEVLKKLVAIAPAICHLFITELAGSVQSLTRSAMDELNKFREVEKALLSTTSTDGAVILRVLQALSSLVASIGDKNNENQIISEKEHGVTISLVWDINTALEPLWQELSTCISTMESFSETAPNLPQSSIVTSSKPAGAMSSLPAGSQNILPYVESFFVMCEKLHPGHLGAGQEFSIATVPDPEEATASAMQPKTPTSATKVDEKHIAFVKFAEKHKKLLNAFVRQNPGLLEKSFSIMLKVPRFVDFDNKRSYFRSKIKHQHDHHHSPLRISVRRAYILEDSYNQLRMRTTQELKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNEATFQPNPNSVYQTEHLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGAKVTYHDIEAIDPDYFKNLKWLLENDISDILDLTFSIDADEEKLILYERNEVTDYELIPGGRNIRVTEENKQQYVDLVAEHRLTTAIRPQINAFLEGFSELIPRELISIFHDKELELLISGLPDIDLDDLRANTEYSGYSPGSPVIQWFWEVVQAFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSADHLPSAHTCFNQLDLPEYPSKEHLEERLLLAIHEANEGFGFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32991" e_stop="33543"/>
            <exon e_start="33716" e_stop="34000"/>
            <exon e_start="34079" e_stop="34283"/>
            <exon e_start="34399" e_stop="34670"/>
            <exon e_start="34757" e_stop="35031"/>
            <exon e_start="35472" e_stop="36591"/>
            <exon e_start="36675" e_stop="36821"/>
            <exon e_start="36896" e_stop="36976"/>
            <exon e_start="37053" e_stop="37278"/>
            <exon e_start="37395" e_stop="37534"/>
            <exon e_start="37618" e_stop="37724"/>
            <exon e_start="38169" e_stop="38436"/>
            <exon e_start="39754" e_stop="39789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.975"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="0.993"/>
          <exon-intron don_prob="0.974" acc_prob="0.977" e_score="0.995"/>
          <exon-intron don_prob="0.818" acc_prob="0.939" e_score="0.993"/>
          <exon-intron don_prob="0.990" acc_prob="0.966" e_score="0.960"/>
          <exon-intron don_prob="0.926" acc_prob="0.999" e_score="0.970"/>
          <exon-intron don_prob="0.980" acc_prob="0.995" e_score="0.993"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="0.990"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.993"/>
          <exon-only e_score="0.694"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="32991" e_stop="33543" e_length="553"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33544" i_stop="33715" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="33716" e_stop="34000" e_length="285"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="34001" i_stop="34078" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="34079" e_stop="34283" e_length="205"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.977">
            <gDNA_intron_boundary i_start="34284" i_stop="34398" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="34399" e_stop="34670" e_length="272"/>
          </exon>
          <intron i_serial="4" don_prob="0.818" acc_prob="0.939">
            <gDNA_intron_boundary i_start="34671" i_stop="34756" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="0.960">
            <gDNA_exon_boundary e_start="34757" e_stop="35031" e_length="275"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.966">
            <gDNA_intron_boundary i_start="35032" i_stop="35471" i_length="440"/>
          </intron>
          <exon e_serial="6" e_score="0.970">
            <gDNA_exon_boundary e_start="35472" e_stop="36591" e_length="1120"/>
          </exon>
          <intron i_serial="6" don_prob="0.926" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36592" i_stop="36674" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="36675" e_stop="36821" e_length="147"/>
          </exon>
          <intron i_serial="7" don_prob="0.980" acc_prob="0.995">
            <gDNA_intron_boundary i_start="36822" i_stop="36895" i_length="74"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="36896" e_stop="36976" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36977" i_stop="37052" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="0.990">
            <gDNA_exon_boundary e_start="37053" e_stop="37278" e_length="226"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="37279" i_stop="37394" i_length="116"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="37395" e_stop="37534" e_length="140"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37535" i_stop="37617" i_length="83"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="37618" e_stop="37724" e_length="107"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37725" i_stop="38168" i_length="444"/>
          </intron>
          <exon e_serial="12" e_score="0.993">
            <gDNA_exon_boundary e_start="38169" e_stop="38436" e_length="268"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38437" i_stop="39753" i_length="1317"/>
          </intron>
          <exon e_serial="13" e_score="0.694">
            <gDNA_exon_boundary e_start="39754" e_stop="39789" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32991" stop="33543"/>
              <exon start="33716" stop="33909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33247" stop="33543"/>
              <exon start="33716" stop="33958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33433" stop="33543"/>
              <exon start="33716" stop="34000"/>
              <exon start="34079" stop="34283"/>
              <exon start="34399" stop="34670"/>
              <exon start="34757" stop="34764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34425" stop="34670"/>
              <exon start="34757" stop="35031"/>
              <exon start="35472" stop="35661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34425" stop="34670"/>
              <exon start="34757" stop="35031"/>
              <exon start="35472" stop="35605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34823" stop="35031"/>
              <exon start="35472" stop="36011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34826" stop="35031"/>
              <exon start="35472" stop="35741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35814" stop="36280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35881" stop="36441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35922" stop="36556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35959" stop="36396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35992" stop="36591"/>
              <exon start="36675" stop="36795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36050" stop="36591"/>
              <exon start="36675" stop="36793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36086" stop="36591"/>
              <exon start="36675" stop="36794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36165" stop="36591"/>
              <exon start="36675" stop="36745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36291" stop="36591"/>
              <exon start="36675" stop="36821"/>
              <exon start="36896" stop="36927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36318" stop="36591"/>
              <exon start="36675" stop="36821"/>
              <exon start="36896" stop="36976"/>
              <exon start="37053" stop="37226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36404" stop="36591"/>
              <exon start="36675" stop="36821"/>
              <exon start="36896" stop="36976"/>
              <exon start="37053" stop="37184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36454" stop="36591"/>
              <exon start="36675" stop="36821"/>
              <exon start="36896" stop="36976"/>
              <exon start="37053" stop="37278"/>
              <exon start="37395" stop="37454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36454" stop="36591"/>
              <exon start="36675" stop="36821"/>
              <exon start="36896" stop="36976"/>
              <exon start="37053" stop="37184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36463" stop="36591"/>
              <exon start="36675" stop="36821"/>
              <exon start="36896" stop="36976"/>
              <exon start="37053" stop="37256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36518" stop="36591"/>
              <exon start="36675" stop="36821"/>
              <exon start="36896" stop="36976"/>
              <exon start="37053" stop="37278"/>
              <exon start="37395" stop="37534"/>
              <exon start="37618" stop="37704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36535" stop="36591"/>
              <exon start="36675" stop="36821"/>
              <exon start="36896" stop="36976"/>
              <exon start="37053" stop="37278"/>
              <exon start="37395" stop="37450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36909" stop="36976"/>
              <exon start="37053" stop="37278"/>
              <exon start="37395" stop="37534"/>
              <exon start="37618" stop="37724"/>
              <exon start="38169" stop="38375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600248" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37164" stop="37278"/>
              <exon start="37395" stop="37534"/>
              <exon start="37618" stop="37724"/>
              <exon start="38169" stop="38382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37226" stop="37278"/>
              <exon start="37395" stop="37534"/>
              <exon start="37618" stop="37724"/>
              <exon start="38169" stop="38436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425118" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37268" stop="37278"/>
              <exon start="37395" stop="37534"/>
              <exon start="37618" stop="37724"/>
              <exon start="38169" stop="38436"/>
              <exon start="39754" stop="39789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37465" stop="37534"/>
              <exon start="37618" stop="37724"/>
              <exon start="38169" stop="38289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262975" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTGGAAGTGGTGCAACTCTAGGTGAAAGTCTTCGAAGTCTTGATGTTGAAATTGGAAGTGCTGATGGGCATGATGATGGTGGAGATAGGCAAGGTTCAGCAGATGCTAGAACTAGGAGGACTAACGTATCGTTTGGAAATTCTACTCAGGTAAGTGCGAGAGATGTTGCCCTTCACAGTGTATCTGAAGCTTCAGAACATCCAAATCAAGAAGCAGAACAAGGTGGACCCAATGATGAACAGCAACGTAATGTAGATGCTGATTCTGGATCAATTGATCCTGCATTTCTTGAGGCGCTTCCTGAGGAGTTGCGAGCCGAGGTTCTCTCAGCTCAACAGGGTCAAGCAACTCAACCACCAAATTCTGAGCCTCAAAATGGTGGAGATATTGATCCAGAATTTCTGGCAGCCCTTCCGTCTGACATCAGAGAAGAAGTGTTGGCACAGCAAAGGGCACAGCGGCTGCAGCAGTCACAAGAATTAGAAGGCCAGCCTGTTGAGATGGACACTGTGTCAATTATTGCTACATTCCCTTCAGAACTACGGGAAGAG : GTCCTTCTGACATCTTCTGATGCCATTCTTGCTAATTTAACACCTGCTCTTGTGGCGGAAGCAAATATGTTGCGTGAGAGATTTGCACGTAGGTATAACCGAACACTTTTTGGTATGTATCCTAGAAACCGTAGAGGCGACTCTAGGCGGAATGAACAATTGGACAGGGCTGGTGGAACCCTTTCACGTAGATCAGCCGGAAGTAAGCCTCTGGAGGCTGATGGGTCTCCCTTAGTTGACACTGAGGGTTTAAGAGCTTTGGTGAGGTTGCTCCGCGTATTCCAG : CCAATATACAAAGTTCCTCTACAGAGGCTGATGTTGAATCTCAGTGCACATGCTGAAACAAGAACTGCTTTAGTGAAAATATTTATGGACTTGTTGATGCTTGATGTCGGACAGCCTGCTACTGATCTGAATACTGCTGAACCCCCATATCGACTATATGGTTGCCAAAGTAATGTGATGTATTCACGTCCTCAACATCTTGATG : GAATTCCTCCATTACTATCTCGTCGTGTTCTTGAGACACTTACATACCTGGCAAAGAACCATTCTTTAGTTGCAAAGACTCTACTTGAATTCAGGCTCCCTCGACCAGTGCTGGAAGGGCCAATAGTTCCGGATCAGAGGCGGGGAAAAGCTGTTATGGTTGAGGCTGATGGACCAGATAGATGGCAGCTTGAAGGACAAGTATCTCTGGCATTGCTTTTGGGCCTCTTGAACCATCCCCTTTATTTGAGAAGTGTTGCACATCTTGAGCAG : CTGTTAAATCTGCTAGATGTTGTAGTCCAAAACACAGAAAGCAAATCAAATGCGCGTGAAGAACCTGGCACATCCTCTACAGAGCAACTGCCTGGTCCTCCAGTCCAATCTGCTGCTGAAATGAATACTGAATCTCATGCAGCTTCATCTGAGGTTGAGGACAAATCTGGAGCATCGTCCTCTATCACAGGCAGAGACCAAAGTACTGAAAGTATTCTACTCAGTCTACCACAATTAGAACTTCGACGTCTGTGCTCATTGCTTGCCAGAGAAGG : TCTTTCAGACAATGCTTACTCTTTGGTAGCTGAGGTACTGAAAAAGTTGGTGGCCATAGCTCCTGCCATTTGTCATTTATTTATTACTGAGCTTGCTGGCTCGGTGCAAAGTCTGACCAGATCTGCGATGGATGAGCTAAACAAGTTTAGGGAAGTGGAAAAAGCACTGCTCAGTACCACTTCAACTGATGGCGCTGTGATACTCAGGGTTTTACAAGCATTAAGCTCTCTTGTTGCTTCAATTGGTGACAAGAACAACGAGAATCAAATTATTTCTGAGAAGGAGCACGGTGTTACTATCTCCCTGGTTTGGGACATTAACACAGCTCTAGAACCTCTATGGCAGGAGCTGAGCACTTGCATTAGCACAATGGAGAGTTTTTCAGAAACAGCACCCAACCTGCCTCAATCATCTATTGTTACCTCATCTAAACCTGCTGGAGCAATGTCTTCGCTTCCTGCAGGCTCACAAAACATTTTACCGTACGTAGAGTCCTTTTTTGTGATGTGTGAGAAGTTGCATCCTGGGCATTTGGGTGCAGGACAGGAGTTCAGTATTGCGACAGTTCCTGATCCAGAAGAGGCTACTGCTTCTGCTATGCAGCCAAAAACACCTACATCTGCAACAAAAGTTGATGAGAAGCACATTGCTTTTGTAAAATTTGCAGAGAAGCACAAAAAACTTCTTAATGCTTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCGATCATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCCTACTTCAGATCTAAGATTAAACATCAACATGATCATCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTACATTTCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTT : GTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAG : AATGACATCAGTGATATTTTAGACCTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAG : GTGACTGATTATGAACTAATCCCAGGTGGACGAAATATCAGAGTCACGGAGGAAAATAAGCAACAGTATGTCGACTTGGTTGCTGAGCATCGGTTGACGACTGCTATCCGTCCTCAGATAAATGCATTTTTGGAAGGATTCAGTGAATTGATTCCGCGAGAGCTGATCTCTATTTTTCATGACAAGGAACTTGAGTTGTTAATTAGCGGTCTTCCAGACATCGATC : TTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGGTTCACCTGTTATTCAGTGGTTTTGGGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAG : GTGCCATTGGAAGGGTTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTATGGCAGTGCTGATCACCTGCCTTCAGCACATACATG : TTTCAACCAGTTGGATCTACCAGAGTATCCCTCCAAAGAGCATCTAGAGGAGAGACTACTGCTTGCCATTCATGAAGCTAACGAAGGATTTGGATTTGGTTAAAACAACAATGGGTGGTCTGAATTAGATTCTGTAGATAATTTCCATGTTAAAAAAGAGAGTTTTTTTTTTATATATACAGGAGAACAGTCTAAGGGCATTTTAAGTCTGTGAGATACCTGTCTATAATGCTGTACAGTCTATTTGCTATGCGAAATGATCCTGGCA : TGTAAAAATAAAATAAAAATAAAAGTCCAAAAAAAA</gDNA_template>
            <first_frame> Q  W  K  W  C  N  S  R  *  K  S  S  K  S  *  C  *  N  W  K  C  *  W  A  *  *  W  W  R  *  A  R  F  S  R  C  *  N  *  E  D  *  R  I  V  W  K  F  Y  S  G  K  C  E  R  C  C  P  S  Q  C  I  *  S  F  R  T  S  K  S  R  S  R  T  R  W  T  Q  *  *  T  A  T  *  C  R  C  *  F  W  I  N  *  S  C  I  S  *  G  A  S  *  G  V  A  S  R  G  S  L  S  S  T  G  S  S  N  S  T  T  K  F  *  A  S  K  W  W  R  Y  *  S  R  I  S  G  S  P  S  V  *  H  Q  R  R  S  V  G  T  A  K  G  T  A  A  A  A  V  T  R  I  R  R  P  A  C  *  D  G  H  C  V  N  Y  C  Y  I  P  F  R  T  T  G  R   : G  P  S  D  I  F  *  C  H  S  C  *  F  N  T  C  S  C  G  G  S  K  Y  V  A  *  E  I  C  T  *  V  *  P  N  T  F  W  Y  V  S  *  K  P  *  R  R  L  *  A  E  *  T  I  G  Q  G  W  W  N  P  F  T  *  I  S  R  K  *  A  S  G  G  *  W  V  S  L  S  *  H  *  G  F  K  S  F  G  E  V  A  P  R  I  P   : A  N  I  Q  S  S  S  T  E  A  D  V  E  S  Q  C  T  C  *  N  K  N  C  F  S  E  N  I  Y  G  L  V  D  A  *  C  R  T  A  C  Y  *  S  E  Y  C  *  T  P  I  S  T  I  W  L  P  K  *  C  D  V  F  T  S  S  T  S  *  W :   N  S  S  I  T  I  S  S  C  S  *  D  T  Y  I  P  G  K  E  P  F  F  S  C  K  D  S  T  *  I  Q  A  P  S  T  S  A  G  R  A  N  S  S  G  S  E  A  G  K  S  C  Y  G  *  G  *  W  T  R  *  M  A  A  *  R  T  S  I  S  G  I  A  F  G  P  L  E  P  S  P  L  F  E  K  C  C  T  S  *  A   : A  V  K  S  A  R  C  C  S  P  K  H  R  K  Q  I  K  C  A  *  R  T  W  H  I  L  Y  R  A  T  A  W  S  S  S  P  I  C  C  *  N  E  Y  *  I  S  C  S  F  I  *  G  *  G  Q  I  W  S  I  V  L  Y  H  R  Q  R  P  K  Y  *  K  Y  S  T  Q  S  T  T  I  R  T  S  T  S  V  L  I  A  C  Q  R  R  :  S  F  R  Q  C  L  L  F  G  S  *  G  T  E  K  V  G  G  H  S  S  C  H  L  S  F  I  Y  Y  *  A  C  W  L  G  A  K  S  D  Q  I  C  D  G  *  A  K  Q  V  *  G  S  G  K  S  T  A  Q  Y  H  F  N  *  W  R  C  D  T  Q  G  F  T  S  I  K  L  S  C  C  F  N  W  *  Q  E  Q  R  E  S  N  Y  F  *  E  G  A  R  C  Y  Y  L  P  G  L  G  H  *  H  S  S  R  T  S  M  A  G  A  E  H  L  H  *  H  N  G  E  F  F  R  N  S  T  Q  P  A  S  I  I  Y  C  Y  L  I  *  T  C  W  S  N  V  F  A  S  C  R  L  T  K  H  F  T  V  R  R  V  L  F  C  D  V  *  E  V  A  S  W  A  F  G  C  R  T  G  V  Q  Y  C  D  S  S  *  S  R  R  G  Y  C  F  C  Y  A  A  K  N  T  Y  I  C  N  K  S  *  *  E  A  H  C  F  C  K  I  C  R  E  A  Q  K  T  S  *  C  F  C  S  A  E  S  W  T  T  G  E  V  F  L  D  H  A  E  G  S  S  F  C  *  F  *  Q  *  K  V  L  L  Q  I  *  D  *  T  S  T  *  S  S  S  Q  S  S  E  N  F  C  E  K  S  L  Y  T  *  R  F  I  *  S  A  A  H  E  D  N  S  R  I  E  R  E  I  D  C  T  F  P  R  G  R  R  N  *  C  W  W  T  Y  *  G  M  V  S  V  I  V  Q  S  N  F  *  Q  G  S  A  I  V  Y  Y  S  W  Q  *  S  N  I  S  A  K  S  Q  L  C  V  P  N  *  A  P  L  I  L  Q  I  C  W  A  S   : C  W  E  G  T  I  *  R  P  T  S  *  C  S  F  Y  T  V  L  L  Q  A  H  T  W  C  *  S  D  I  S  *  Y  R  S  Y  *  S  *  L  L  Q  K  F  E  M  A  A  *   : E  *  H  Q  *  Y  F  R  P  Y  I  Q  Y  *  C  *  *  R  E  V  D  T  L  *  T  Q  *   : G  D  *  L  *  T  N  P  R  W  T  K  Y  Q  S  H  G  G  K  *  A  T  V  C  R  L  G  C  *  A  S  V  D  D  C  Y  P  S  S  D  K  C  I  F  G  R  I  Q  *  I  D  S  A  R  A  D  L  Y  F  S  *  Q  G  T  *  V  V  N  *  R  S  S  R  H  R  S :   *  *  L  K  G  K  Y  R  I  F  W  I  Q  P  R  F  T  C  Y  S  V  V  L  G  S  C  S  S  F  *  Q  G  R  Q  S  S  P  S  S  I  C  H  W  N  L  K   : G  A  I  G  R  V  *  C  T  A  R  N  F  R  F  P  E  I  S  D  P  Q  S  L  W  Q  C  *  S  P  A  F  S  T  Y  M  :  F  Q  P  V  G  S  T  R  V  S  L  Q  R  A  S  R  G  E  T  T  A  C  H  S  *  S  *  R  R  I  W  I  W  L  K  Q  Q  W  V  V  *  I  R  F  C  R  *  F  P  C  *  K  R  E  F  F  F  Y  I  Y  R  R  T  V  *  G  H  F  K  S  V  R  Y  L  S  I  M  L  Y  S  L  F  A  M  R  N  D  P  G   : M  *  K  *  N  K  N  K  S  P  K  K  </first_frame>
            <second_frame>  S  G  S  G  A  T  L  G  E  S  L  R  S  L  D  V  E  I  G  S  A  D  G  H  D  D  G  G  D  R  Q  G  S  A  D  A  R  T  R  R  T  N  V  S  F  G  N  S  T  Q  V  S  A  R  D  V  A  L  H  S  V  S  E  A  S  E  H  P  N  Q  E  A  E  Q  G  G  P  N  D  E  Q  Q  R  N  V  D  A  D  S  G  S  I  D  P  A  F  L  E  A  L  P  E  E  L  R  A  E  V  L  S  A  Q  Q  G  Q  A  T  Q  P  P  N  S  E  P  Q  N  G  G  D  I  D  P  E  F  L  A  A  L  P  S  D  I  R  E  E  V  L  A  Q  Q  R  A  Q  R  L  Q  Q  S  Q  E  L  E  G  Q  P  V  E  M  D  T  V  S  I  I  A  T  F  P  S  E  L  R  E  E  :  V  L  L  T  S  S  D  A  I  L  A  N  L  T  P  A  L  V  A  E  A  N  M  L  R  E  R  F  A  R  R  Y  N  R  T  L  F  G  M  Y  P  R  N  R  R  G  D  S  R  R  N  E  Q  L  D  R  A  G  G  T  L  S  R  R  S  A  G  S  K  P  L  E  A  D  G  S  P  L  V  D  T  E  G  L  R  A  L  V  R  L  L  R  V  F  Q  :  P  I  Y  K  V  P  L  Q  R  L  M  L  N  L  S  A  H  A  E  T  R  T  A  L  V  K  I  F  M  D  L  L  M  L  D  V  G  Q  P  A  T  D  L  N  T  A  E  P  P  Y  R  L  Y  G  C  Q  S  N  V  M  Y  S  R  P  Q  H  L  D   : G  I  P  P  L  L  S  R  R  V  L  E  T  L  T  Y  L  A  K  N  H  S  L  V  A  K  T  L  L  E  F  R  L  P  R  P  V  L  E  G  P  I  V  P  D  Q  R  R  G  K  A  V  M  V  E  A  D  G  P  D  R  W  Q  L  E  G  Q  V  S  L  A  L  L  L  G  L  L  N  H  P  L  Y  L  R  S  V  A  H  L  E  Q  :  L  L  N  L  L  D  V  V  V  Q  N  T  E  S  K  S  N  A  R  E  E  P  G  T  S  S  T  E  Q  L  P  G  P  P  V  Q  S  A  A  E  M  N  T  E  S  H  A  A  S  S  E  V  E  D  K  S  G  A  S  S  S  I  T  G  R  D  Q  S  T  E  S  I  L  L  S  L  P  Q  L  E  L  R  R  L  C  S  L  L  A  R  E  G :   L  S  D  N  A  Y  S  L  V  A  E  V  L  K  K  L  V  A  I  A  P  A  I  C  H  L  F  I  T  E  L  A  G  S  V  Q  S  L  T  R  S  A  M  D  E  L  N  K  F  R  E  V  E  K  A  L  L  S  T  T  S  T  D  G  A  V  I  L  R  V  L  Q  A  L  S  S  L  V  A  S  I  G  D  K  N  N  E  N  Q  I  I  S  E  K  E  H  G  V  T  I  S  L  V  W  D  I  N  T  A  L  E  P  L  W  Q  E  L  S  T  C  I  S  T  M  E  S  F  S  E  T  A  P  N  L  P  Q  S  S  I  V  T  S  S  K  P  A  G  A  M  S  S  L  P  A  G  S  Q  N  I  L  P  Y  V  E  S  F  F  V  M  C  E  K  L  H  P  G  H  L  G  A  G  Q  E  F  S  I  A  T  V  P  D  P  E  E  A  T  A  S  A  M  Q  P  K  T  P  T  S  A  T  K  V  D  E  K  H  I  A  F  V  K  F  A  E  K  H  K  K  L  L  N  A  F  V  R  Q  N  P  G  L  L  E  K  S  F  S  I  M  L  K  V  P  R  F  V  D  F  D  N  K  R  S  Y  F  R  S  K  I  K  H  Q  H  D  H  H  H  S  P  L  R  I  S  V  R  R  A  Y  I  L  E  D  S  Y  N  Q  L  R  M  R  T  T  Q  E  L  K  G  R  L  T  V  H  F  Q  G  E  E  G  I  D  A  G  G  L  T  R  E  W  Y  Q  L  L  S  R  V  I  F  D  K  G  A  L  L  F  T  T  V  G  N  E  A  T  F  Q  P  N  P  N  S  V  Y  Q  T  E  H  L  S  Y  F  K  F  V  G  R  V  :  V  G  K  A  L  F  D  G  Q  L  L  D  V  H  F  T  R  S  F  Y  K  H  I  L  G  A  K  V  T  Y  H  D  I  E  A  I  D  P  D  Y  F  K  N  L  K  W  L  L  E  :  N  D  I  S  D  I  L  D  L  T  F  S  I  D  A  D  E  E  K  L  I  L  Y  E  R  N  E  :  V  T  D  Y  E  L  I  P  G  G  R  N  I  R  V  T  E  E  N  K  Q  Q  Y  V  D  L  V  A  E  H  R  L  T  T  A  I  R  P  Q  I  N  A  F  L  E  G  F  S  E  L  I  P  R  E  L  I  S  I  F  H  D  K  E  L  E  L  L  I  S  G  L  P  D  I  D   : L  D  D  L  R  A  N  T  E  Y  S  G  Y  S  P  G  S  P  V  I  Q  W  F  W  E  V  V  Q  A  F  S  K  E  D  K  A  R  L  L  Q  F  V  T  G  T  S  K  :  V  P  L  E  G  F  S  A  L  Q  G  I  S  G  S  Q  K  F  Q  I  H  K  A  Y  G  S  A  D  H  L  P  S  A  H  T  C :   F  N  Q  L  D  L  P  E  Y  P  S  K  E  H  L  E  E  R  L  L  L  A  I  H  E  A  N  E  G  F  G  F  G  *  N  N  N  G  W  S  E  L  D  S  V  D  N  F  H  V  K  K  E  S  F  F  F  I  Y  T  G  E  Q  S  K  G  I  L  S  L  *  D  T  C  L  *  C  C  T  V  Y  L  L  C  E  M  I  L  A  :  C  K  N  K  I  K  I  K  V  Q  K  K </second_frame>
            <third_frame>   V  E  V  V  Q  L  *  V  K  V  F  E  V  L  M  L  K  L  E  V  L  M  G  M  M  M  V  E  I  G  K  V  Q  Q  M  L  E  L  G  G  L  T  Y  R  L  E  I  L  L  R  *  V  R  E  M  L  P  F  T  V  Y  L  K  L  Q  N  I  Q  I  K  K  Q  N  K  V  D  P  M  M  N  S  N  V  M  *  M  L  I  L  D  Q  L  I  L  H  F  L  R  R  F  L  R  S  C  E  P  R  F  S  Q  L  N  R  V  K  Q  L  N  H  Q  I  L  S  L  K  M  V  E  I  L  I  Q  N  F  W  Q  P  F  R  L  T  S  E  K  K  C  W  H  S  K  G  H  S  G  C  S  S  H  K  N  *  K  A  S  L  L  R  W  T  L  C  Q  L  L  L  H  S  L  Q  N  Y  G  K  R :   S  F  *  H  L  L  M  P  F  L  L  I  *  H  L  L  L  W  R  K  Q  I  C  C  V  R  D  L  H  V  G  I  T  E  H  F  L  V  C  I  L  E  T  V  E  A  T  L  G  G  M  N  N  W  T  G  L  V  E  P  F  H  V  D  Q  P  E  V  S  L  W  R  L  M  G  L  P  *  L  T  L  R  V  *  E  L  W  *  G  C  S  A  Y  S  S :   Q  Y  T  K  F  L  Y  R  G  *  C  *  I  S  V  H  M  L  K  Q  E  L  L  *  *  K  Y  L  W  T  C  *  C  L  M  S  D  S  L  L  L  I  *  I  L  L  N  P  H  I  D  Y  M  V  A  K  V  M  *  C  I  H  V  L  N  I  L  M  :  E  F  L  H  Y  Y  L  V  V  F  L  R  H  L  H  T  W  Q  R  T  I  L  *  L  Q  R  L  Y  L  N  S  G  S  L  D  Q  C  W  K  G  Q  *  F  R  I  R  G  G  E  K  L  L  W  L  R  L  M  D  Q  I  D  G  S  L  K  D  K  Y  L  W  H  C  F  W  A  S  *  T  I  P  F  I  *  E  V  L  H  I  L  S  S :   C  *  I  C  *  M  L  *  S  K  T  Q  K  A  N  Q  M  R  V  K  N  L  A  H  P  L  Q  S  N  C  L  V  L  Q  S  N  L  L  L  K  *  I  L  N  L  M  Q  L  H  L  R  L  R  T  N  L  E  H  R  P  L  S  Q  A  E  T  K  V  L  K  V  F  Y  S  V  Y  H  N  *  N  F  D  V  C  A  H  C  L  P  E  K   : V  F  Q  T  M  L  T  L  W  *  L  R  Y  *  K  S  W  W  P  *  L  L  P  F  V  I  Y  L  L  L  S  L  L  A  R  C  K  V  *  P  D  L  R  W  M  S  *  T  S  L  G  K  W  K  K  H  C  S  V  P  L  Q  L  M  A  L  *  Y  S  G  F  Y  K  H  *  A  L  L  L  L  Q  L  V  T  R  T  T  R  I  K  L  F  L  R  R  S  T  V  L  L  S  P  W  F  G  T  L  T  Q  L  *  N  L  Y  G  R  S  *  A  L  A  L  A  Q  W  R  V  F  Q  K  Q  H  P  T  C  L  N  H  L  L  L  P  H  L  N  L  L  E  Q  C  L  R  F  L  Q  A  H  K  T  F  Y  R  T  *  S  P  F  L  *  C  V  R  S  C  I  L  G  I  W  V  Q  D  R  S  S  V  L  R  Q  F  L  I  Q  K  R  L  L  L  L  L  C  S  Q  K  H  L  H  L  Q  Q  K  L  M  R  S  T  L  L  L  *  N  L  Q  R  S  T  K  N  F  L  M  L  L  F  G  R  I  L  D  Y  W  R  S  L  S  R  S  C  *  R  F  L  V  L  L  I  L  T  I  K  G  P  T  S  D  L  R  L  N  I  N  M  I  I  I  T  V  L  *  E  F  L  *  E  E  L  I  Y  L  K  I  H  I  I  S  C  A  *  G  Q  L  K  N  *  K  G  D  *  L  Y  I  S  K  G  K  K  E  L  M  L  V  D  L  L  G  N  G  I  S  Y  C  P  E  *  F  L  T  R  E  R  Y  C  L  L  Q  L  A  M  K  Q  H  F  S  Q  I  P  T  L  C  T  K  L  S  T  S  H  T  S  N  L  L  G  E  L :   L  G  R  H  Y  L  T  A  N  F  L  M  F  I  L  H  G  P  S  T  S  T  Y  L  V  L  K  *  H  I  M  I  S  K  L  L  I  L  T  T  S  K  I  *  N  G  C  L  R :   M  T  S  V  I  F  *  T  L  H  S  V  L  M  L  M  K  R  S  *  Y  F  M  N  A  M  R :   *  L  I  M  N  *  S  Q  V  D  E  I  S  E  S  R  R  K  I  S  N  S  M  S  T  W  L  L  S  I  G  *  R  L  L  S  V  L  R  *  M  H  F  W  K  D  S  V  N  *  F  R  E  S  *  S  L  F  F  M  T  R  N  L  S  C  *  L  A  V  F  Q  T  S  I  :  L  M  T  *  G  Q  I  Q  N  I  L  D  T  A  Q  V  H  L  L  F  S  G  F  G  K  L  F  K  L  L  A  R  K  T  K  L  A  F  F  N  L  S  L  E  P  Q  R :   C  H  W  K  G  L  V  H  C  K  E  F  Q  V  P  R  N  F  R  S  T  K  L  M  A  V  L  I  T  C  L  Q  H  I  H   : V  S  T  S  W  I  Y  Q  S  I  P  P  K  S  I  *  R  R  D  Y  C  L  P  F  M  K  L  T  K  D  L  D  L  V  K  T  T  M  G  G  L  N  *  I  L  *  I  I  S  M  L  K  K  R  V  F  F  L  Y  I  Q  E  N  S  L  R  A  F  *  V  C  E  I  P  V  Y  N  A  V  Q  S  I  C  Y  A  K  *  S  W  H :   V  K  I  K  *  K  *  K  S  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053M02.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32992" stop="33543"/>
                    <exon start="33716" stop="34000"/>
                    <exon start="34079" stop="34283"/>
                    <exon start="34399" stop="34670"/>
                    <exon start="34757" stop="35031"/>
                    <exon start="35472" stop="36591"/>
                    <exon start="36675" stop="36821"/>
                    <exon start="36896" stop="36976"/>
                    <exon start="37053" stop="37278"/>
                    <exon start="37395" stop="37534"/>
                    <exon start="37618" stop="37724"/>
                    <exon start="38169" stop="38271"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>3510</number_coding_nucleotides>
                  <number_encoded_amino_acids>1170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGSGATLGESLRSLDVEIGSADGHDDGGDRQGSADARTRRTNVSFGNSTQVSARDVALHSVSEASEHPNQEAEQGGPNDEQQRNVDADSGSIDPAFLEALPEELRAEVLSAQQGQATQPPNSEPQNGGDIDPEFLAALPSDIREEVLAQQRAQRLQQSQELEGQPVEMDTVSIIATFPSELREEVLLTSSDAILANLTPALVAEANMLRERFARRYNRTLFGMYPRNRRGDSRRNEQLDRAGGTLSRRSAGSKPLEADGSPLVDTEGLRALVRLLRVFQPIYKVPLQRLMLNLSAHAETRTALVKIFMDLLMLDVGQPATDLNTAEPPYRLYGCQSNVMYSRPQHLDGIPPLLSRRVLETLTYLAKNHSLVAKTLLEFRLPRPVLEGPIVPDQRRGKAVMVEADGPDRWQLEGQVSLALLLGLLNHPLYLRSVAHLEQLLNLLDVVVQNTESKSNAREEPGTSSTEQLPGPPVQSAAEMNTESHAASSEVEDKSGASSSITGRDQSTESILLSLPQLELRRLCSLLAREGLSDNAYSLVAEVLKKLVAIAPAICHLFITELAGSVQSLTRSAMDELNKFREVEKALLSTTSTDGAVILRVLQALSSLVASIGDKNNENQIISEKEHGVTISLVWDINTALEPLWQELSTCISTMESFSETAPNLPQSSIVTSSKPAGAMSSLPAGSQNILPYVESFFVMCEKLHPGHLGAGQEFSIATVPDPEEATASAMQPKTPTSATKVDEKHIAFVKFAEKHKKLLNAFVRQNPGLLEKSFSIMLKVPRFVDFDNKRSYFRSKIKHQHDHHHSPLRISVRRAYILEDSYNQLRMRTTQELKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNEATFQPNPNSVYQTEHLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGAKVTYHDIEAIDPDYFKNLKWLLENDISDILDLTFSIDADEEKLILYERNEVTDYELIPGGRNIRVTEENKQQYVDLVAEHRLTTAIRPQINAFLEGFSELIPRELISIFHDKELELLISGLPDIDLDDLRANTEYSGYSPGSPVIQWFWEVVQAFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSADHLPSAHTCFNQLDLPEYPSKEHLEERLLLAIHEANEGFGFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="55112" PGL_stop="46927"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55112" e_stop="55087"/>
            <exon e_start="54774" e_stop="54664"/>
            <exon e_start="48497" e_stop="48364"/>
            <exon e_start="48265" e_stop="48146"/>
            <exon e_start="47813" e_stop="47744"/>
            <exon e_start="47398" e_stop="46927"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.593" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.830" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="0.985"/>
          <exon-intron don_prob="0.983" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55112" e_stop="55087" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.593" acc_prob="1.000">
            <gDNA_intron_boundary i_start="55086" i_stop="54775" i_length="312"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54774" e_stop="54664" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.830" acc_prob="0.996">
            <gDNA_intron_boundary i_start="54663" i_stop="48498" i_length="6166"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="48497" e_stop="48364" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48363" i_stop="48266" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48265" e_stop="48146" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48145" i_stop="47814" i_length="332"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47813" e_stop="47744" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47743" i_stop="47399" i_length="345"/>
          </intron>
          <exon e_serial="6" e_score="0.921">
            <gDNA_exon_boundary e_start="47398" e_stop="46927" e_length="472"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55112" stop="55087"/>
              <exon start="54774" stop="54664"/>
              <exon start="48497" stop="48364"/>
              <exon start="48265" stop="48146"/>
              <exon start="47813" stop="47744"/>
              <exon start="47398" stop="47173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54736" stop="54664"/>
              <exon start="48497" stop="48364"/>
              <exon start="48265" stop="48155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48489" stop="48364"/>
              <exon start="48265" stop="48146"/>
              <exon start="47813" stop="47744"/>
              <exon start="47398" stop="46984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48449" stop="48364"/>
              <exon start="48265" stop="48146"/>
              <exon start="47813" stop="47744"/>
              <exon start="47398" stop="46927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431202" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48442" stop="48364"/>
              <exon start="48265" stop="48146"/>
              <exon start="47813" stop="47744"/>
              <exon start="47398" stop="46929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585782" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48442" stop="48364"/>
              <exon start="48265" stop="48146"/>
              <exon start="47813" stop="47744"/>
              <exon start="47398" stop="46929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586082" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48380" stop="48364"/>
              <exon start="48265" stop="48146"/>
              <exon start="47813" stop="47744"/>
              <exon start="47398" stop="46928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415946" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47796" stop="47744"/>
              <exon start="47398" stop="46956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428263" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47305" stop="47011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47288" stop="46930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606786" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTCAACAATTGGCACTATTTTGTG : CCATGGATGAGCAATTTATTCTGAGGGTTCCACCTTCTGTTGCTGAGCGAATTGACCGTCTTTTAAGTGAAAATCCTTCTTCAGAAGACAAACTGGACTTGTCTTTTTCTG : AGGATGGAAAGACGGGCAGTTTTGTCATAGGCGATGTGCACTTTCCTGCATCACTTTTGAATCTTCCTTGCATAGTGGAGTCGTACAAAACTTATGATGACAACGTGCTCATTAAATCCGCAGACATTGGTCAA : ATGATTATGGTGAGAGAAGAAGGTGATCCTGTTCCAGATGTGGTGGAATATAGACATGGCCTCACACCTCCAATGAGAGATGCACGAAGACGAAGATTTCGGAGAGAGCCAGATCTTAAT : CCTGAGCTTGTTCGGCGTGTTGAGAAAGACTTGCAGAACATAATGTCTGGTGGAACAGCTGAGAATATTG : ATATAGAAGTTGTCGAGCAAGAGGAAGGAGGTGAAGCAAGTGCACGCCATGTGAACAAGAAAGTGGCACAACCTGCAACAAAGCCTGACATTTCTGAGCCCGGGACAGCTGGTGAGGATCCTGATAGAACTGAATCTGAGGATTCTGATGATTCAATATAGTCGATGACATTTTTCAGCCTTTGCTATTGTTATAGTGGCTACAAGTCTTTGCTAATGTTGTAGTGCACTTCTAGTTAAGCGCCTTCAGAATTTATTAGAAATTTTAGCTCTTGTATTTTAATACAGTTGGCTTATCGTGTCTAGGTTTGAATATCGCTGTAATATAACAGTTTGCAATGTCTACTTCAGACATGCTAGCATGACAATTGCAAATTGTGTTCTGTAAAGTGATGGTCTATCTCCAGTTGGATGTATTGAATTTGCTTATTTTTTTTTACCTAAAATAAGATGTTTATTGCAAAATTGAACAA</gDNA_template>
            <first_frame> A  S  T  I  G  T  I  L  C :   H  G  *  A  I  Y  S  E  G  S  T  F  C  C  *  A  N  *  P  S  F  K  *  K  S  F  F  R  R  Q  T  G  L  V  F  F  * :   G  W  K  D  G  Q  F  C  H  R  R  C  A  L  S  C  I  T  F  E  S  S  L  H  S  G  V  V  Q  N  L  *  *  Q  R  A  H  *  I  R  R  H  W  S   : N  D  Y  G  E  R  R  R  *  S  C  S  R  C  G  G  I  *  T  W  P  H  T  S  N  E  R  C  T  K  T  K  I  S  E  R  A  R  S  *   : S  *  A  C  S  A  C  *  E  R  L  A  E  H  N  V  W  W  N  S  *  E  Y  * :   Y  R  S  C  R  A  R  G  R  R  *  S  K  C  T  P  C  E  Q  E  S  G  T  T  C  N  K  A  *  H  F  *  A  R  D  S  W  *  G  S  *  *  N  *  I  *  G  F  *  *  F  N  I  V  D  D  I  F  Q  P  L  L  L  L  *  W  L  Q  V  F  A  N  V  V  V  H  F  *  L  S  A  F  R  I  Y  *  K  F  *  L  L  Y  F  N  T  V  G  L  S  C  L  G  L  N  I  A  V  I  *  Q  F  A  M  S  T  S  D  M  L  A  *  Q  L  Q  I  V  F  C  K  V  M  V  Y  L  Q  L  D  V  L  N  L  L  I  F  F  Y  L  K  *  D  V  Y  C  K  I  E  Q </first_frame>
            <second_frame>  L  Q  Q  L  A  L  F  C   : A  M  D  E  Q  F  I  L  R  V  P  P  S  V  A  E  R  I  D  R  L  L  S  E  N  P  S  S  E  D  K  L  D  L  S  F  S   : E  D  G  K  T  G  S  F  V  I  G  D  V  H  F  P  A  S  L  L  N  L  P  C  I  V  E  S  Y  K  T  Y  D  D  N  V  L  I  K  S  A  D  I  G  Q  :  M  I  M  V  R  E  E  G  D  P  V  P  D  V  V  E  Y  R  H  G  L  T  P  P  M  R  D  A  R  R  R  R  F  R  R  E  P  D  L  N  :  P  E  L  V  R  R  V  E  K  D  L  Q  N  I  M  S  G  G  T  A  E  N  I   : D  I  E  V  V  E  Q  E  E  G  G  E  A  S  A  R  H  V  N  K  K  V  A  Q  P  A  T  K  P  D  I  S  E  P  G  T  A  G  E  D  P  D  R  T  E  S  E  D  S  D  D  S  I  *  S  M  T  F  F  S  L  C  Y  C  Y  S  G  Y  K  S  L  L  M  L  *  C  T  S  S  *  A  P  S  E  F  I  R  N  F  S  S  C  I  L  I  Q  L  A  Y  R  V  *  V  *  I  S  L  *  Y  N  S  L  Q  C  L  L  Q  T  C  *  H  D  N  C  K  L  C  S  V  K  *  W  S  I  S  S  W  M  Y  *  I  C  L  F  F  F  T  *  N  K  M  F  I  A  K  L  N   </second_frame>
            <third_frame>   F  N  N  W  H  Y  F  V  :  P  W  M  S  N  L  F  *  G  F  H  L  L  L  L  S  E  L  T  V  F  *  V  K  I  L  L  Q  K  T  N  W  T  C  L  F  L  :  R  M  E  R  R  A  V  L  S  *  A  M  C  T  F  L  H  H  F  *  I  F  L  A  *  W  S  R  T  K  L  M  M  T  T  C  S  L  N  P  Q  T  L  V  K :   *  L  W  *  E  K  K  V  I  L  F  Q  M  W  W  N  I  D  M  A  S  H  L  Q  *  E  M  H  E  D  E  D  F  G  E  S  Q  I  L  I :   L  S  L  F  G  V  L  R  K  T  C  R  T  *  C  L  V  E  Q  L  R  I  L  :  I  *  K  L  S  S  K  R  K  E  V  K  Q  V  H  A  M  *  T  R  K  W  H  N  L  Q  Q  S  L  T  F  L  S  P  G  Q  L  V  R  I  L  I  E  L  N  L  R  I  L  M  I  Q  Y  S  R  *  H  F  S  A  F  A  I  V  I  V  A  T  S  L  C  *  C  C  S  A  L  L  V  K  R  L  Q  N  L  L  E  I  L  A  L  V  F  *  Y  S  W  L  I  V  S  R  F  E  Y  R  C  N  I  T  V  C  N  V  Y  F  R  H  A  S  M  T  I  A  N  C  V  L  *  S  D  G  L  S  P  V  G  C  I  E  F  A  Y  F  F  L  P  K  I  R  C  L  L  Q  N  *  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053M02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55111" stop="55087"/>
                    <exon start="54774" stop="54664"/>
                    <exon start="48497" stop="48364"/>
                    <exon start="48265" stop="48146"/>
                    <exon start="47813" stop="47744"/>
                    <exon start="47398" stop="47238"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQQLALFCAMDEQFILRVPPSVAERIDRLLSENPSSEDKLDLSFSEDGKTGSFVIGDVHFPASLLNLPCIVESYKTYDDNVLIKSADIGQMIMVREEGDPVPDVVEYRHGLTPPMRDARRRRFRREPDLNPELVRRVEKDLQNIMSGGTAENIDIEVVEQEEGGEASARHVNKKVAQPATKPDISEPGTAGEDPDRTESEDSDDSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="68725" PGL_stop="68971"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68725" e_stop="68971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="68725" e_stop="68971" e_length="247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68725" stop="68971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605982" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCACTAAACTGAGTTTTCCACTTCATTAACAGCTTACACCACAGTTGAAGCCCAAAATTGGTGCTCACCCTGAAAATATATTGCTCAGACCGTCCAAAAAGAACTGGTTACCCTATCGACAAGAATTGTTTAGAAAGGAGTACAATTTCCTTTTGATTTGTGAAAGATGATAATACAACTACCATAAGAGGCTTCATTTTACATATCAGCTGACCCTTACTTTTCAAGAAATTAGATGTTGAACCA</gDNA_template>
            <first_frame> I  T  K  L  S  F  P  L  H  *  Q  L  T  P  Q  L  K  P  K  I  G  A  H  P  E  N  I  L  L  R  P  S  K  K  N  W  L  P  Y  R  Q  E  L  F  R  K  E  Y  N  F  L  L  I  C  E  R  *  *  Y  N  Y  H  K  R  L  H  F  T  Y  Q  L  T  L  T  F  Q  E  I  R  C  *  T  </first_frame>
            <second_frame>  S  L  N  *  V  F  H  F  I  N  S  L  H  H  S  *  S  P  K  L  V  L  T  L  K  I  Y  C  S  D  R  P  K  R  T  G  Y  P  I  D  K  N  C  L  E  R  S  T  I  S  F  *  F  V  K  D  D  N  T  T  T  I  R  G  F  I  L  H  I  S  *  P  L  L  F  K  K  L  D  V  E  P </second_frame>
            <third_frame>   H  *  T  E  F  S  T  S  L  T  A  Y  T  T  V  E  A  Q  N  W  C  S  P  *  K  Y  I  A  Q  T  V  Q  K  E  L  V  T  L  S  T  R  I  V  *  K  G  V  Q  F  P  F  D  L  *  K  M  I  I  Q  L  P  *  E  A  S  F  Y  I  S  A  D  P  Y  F  S  R  N  *  M  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0053M02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="70422" PGL_stop="68775"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70422" e_stop="70263"/>
            <exon e_start="70180" e_stop="70026"/>
            <exon e_start="69830" e_stop="69704"/>
            <exon e_start="69228" e_stop="69167"/>
            <exon e_start="69045" e_stop="68775"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.907" acc_prob="0.982" e_score="0.981"/>
          <exon-intron don_prob="0.974" acc_prob="0.917" e_score="0.994"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="0.969"/>
          <exon-intron don_prob="0.000" acc_prob="0.703" e_score="0.871"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="70422" e_stop="70263" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.907" acc_prob="0.982">
            <gDNA_intron_boundary i_start="70262" i_stop="70181" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="70180" e_stop="70026" e_length="155"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.917">
            <gDNA_intron_boundary i_start="70025" i_stop="69831" i_length="195"/>
          </intron>
          <exon e_serial="3" e_score="0.969">
            <gDNA_exon_boundary e_start="69830" e_stop="69704" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="69703" i_stop="69229" i_length="475"/>
          </intron>
          <exon e_serial="4" e_score="0.871">
            <gDNA_exon_boundary e_start="69228" e_stop="69167" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.703">
            <gDNA_intron_boundary i_start="69166" i_stop="69046" i_length="121"/>
          </intron>
          <exon e_serial="5" e_score="0.930">
            <gDNA_exon_boundary e_start="69045" e_stop="68775" e_length="271"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70422" stop="70263"/>
              <exon start="70180" stop="70026"/>
              <exon start="69830" stop="69704"/>
              <exon start="69228" stop="69167"/>
              <exon start="69045" stop="68775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585435" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATCGACCCCCCAAATTTGCGCCTGCTTCTATGGGCGAGGAGAAAATGTCGAAGCAGGAGAGAAATGAATTGAGGAGGGAAAAAGAGAGATTGCGAAATGCTAAACAAAGCCCGTATATGATAGATTTGTTGAATGATCTTGAAGGAAGACCCGAAGAG : GTAAGAGAAGTTGTTGGATCTGAAAGTAGAGAACTCACAAACTACATGGCTAAAATGGAAGAACGTGCAAAAAGAGAAGAGGAGGCGTTTGATCGTGCCCCACTTACAAAATTGGAGAAAAAGAAAATGAAACATCTGAAGAAGTCAAGAAATGG : GTTGCTTGGGCTGACAGATAGTTTCTATGACGAGATAAAAAGTTTGCCTTTAGGGGAACCTGTTTCTGAACAATCAGAAAACTTTGAGAAAGGCGGCACTGAAATCAAACAACAGAAGAAGCGTAAG : AGGAGGAATTGATATGACTGAGGTTCGAGTACATCGATATCCACCAATTTAGAGGCTTTAAG : TGATGACTGAAACCTAGATGGATAATTGAAAGTTGCTTGCTGCAAGGCTGAAGTGCGCTATGGCGGCTGTGGTTTGGTTCAACATCTAATTTCTTGAAAAGTAAGGGTCAGCTGATATGTAAAATGAAGCCTCTTATGGTAGTTGTATTATCATCTTTCACAAATCAAAAGGAAATTGTACTCCTTTCTAAACAATTCTTGTCGATAGGGTAACCAGTTCTTTTTGGACGGTCTGAGCAATATATTTTCAGGGTGAGCACCAATTTTGGGC</gDNA_template>
            <first_frame> I  S  T  P  Q  I  C  A  C  F  Y  G  R  G  E  N  V  E  A  G  E  K  *  I  E  E  G  K  R  E  I  A  K  C  *  T  K  P  V  Y  D  R  F  V  E  *  S  *  R  K  T  R  R   : G  K  R  S  C  W  I  *  K  *  R  T  H  K  L  H  G  *  N  G  R  T  C  K  K  R  R  G  G  V  *  S  C  P  T  Y  K  I  G  E  K  E  N  E  T  S  E  E  V  K  K  W  :  V  A  W  A  D  R  *  F  L  *  R  D  K  K  F  A  F  R  G  T  C  F  *  T  I  R  K  L  *  E  R  R  H  *  N  Q  T  T  E  E  A  *   : E  E  E  L  I  *  L  R  F  E  Y  I  D  I  H  Q  F  R  G  F  K  :  *  *  L  K  P  R  W  I  I  E  S  C  L  L  Q  G  *  S  A  L  W  R  L  W  F  G  S  T  S  N  F  L  K  S  K  G  Q  L  I  C  K  M  K  P  L  M  V  V  V  L  S  S  F  T  N  Q  K  E  I  V  L  L  S  K  Q  F  L  S  I  G  *  P  V  L  F  G  R  S  E  Q  Y  I  F  R  V  S  T  N  F  G  </first_frame>
            <second_frame>  Y  R  P  P  K  F  A  P  A  S  M  G  E  E  K  M  S  K  Q  E  R  N  E  L  R  R  E  K  E  R  L  R  N  A  K  Q  S  P  Y  M  I  D  L  L  N  D  L  E  G  R  P  E  E  :  V  R  E  V  V  G  S  E  S  R  E  L  T  N  Y  M  A  K  M  E  E  R  A  K  R  E  E  E  A  F  D  R  A  P  L  T  K  L  E  K  K  K  M  K  H  L  K  K  S  R  N  G :   L  L  G  L  T  D  S  F  Y  D  E  I  K  S  L  P  L  G  E  P  V  S  E  Q  S  E  N  F  E  K  G  G  T  E  I  K  Q  Q  K  K  R  K  :  R  R  N  *  Y  D  *  G  S  S  T  S  I  S  T  N  L  E  A  L  S :   D  D  *  N  L  D  G  *  L  K  V  A  C  C  K  A  E  V  R  Y  G  G  C  G  L  V  Q  H  L  I  S  *  K  V  R  V  S  *  Y  V  K  *  S  L  L  W  *  L  Y  Y  H  L  S  Q  I  K  R  K  L  Y  S  F  L  N  N  S  C  R  *  G  N  Q  F  F  L  D  G  L  S  N  I  F  S  G  *  A  P  I  L  G </second_frame>
            <third_frame>   I  D  P  P  N  L  R  L  L  L  W  A  R  R  K  C  R  S  R  R  E  M  N  *  G  G  K  K  R  D  C  E  M  L  N  K  A  R  I  *  *  I  C  *  M  I  L  K  E  D  P  K  R :   *  E  K  L  L  D  L  K  V  E  N  S  Q  T  T  W  L  K  W  K  N  V  Q  K  E  K  R  R  R  L  I  V  P  H  L  Q  N  W  R  K  R  K  *  N  I  *  R  S  Q  E  M   : G  C  L  G  *  Q  I  V  S  M  T  R  *  K  V  C  L  *  G  N  L  F  L  N  N  Q  K  T  L  R  K  A  A  L  K  S  N  N  R  R  S  V  R :   G  G  I  D  M  T  E  V  R  V  H  R  Y  P  P  I  *  R  L  *   : V  M  T  E  T  *  M  D  N  *  K  L  L  A  A  R  L  K  C  A  M  A  A  V  V  W  F  N  I  *  F  L  E  K  *  G  S  A  D  M  *  N  E  A  S  Y  G  S  C  I  I  I  F  H  K  S  K  G  N  C  T  P  F  *  T  I  L  V  D  R  V  T  S  S  F  W  T  V  *  A  I  Y  F  Q  G  E  H  Q  F  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053M02.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70421" stop="70263"/>
                    <exon start="70180" stop="70026"/>
                    <exon start="69830" stop="69704"/>
                    <exon start="69228" stop="69217"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRPPKFAPASMGEEKMSKQERNELRREKERLRNAKQSPYMIDLLNDLEGRPEEVREVVGSESRELTNYMAKMEERAKREEEAFDRAPLTKLEKKKMKHLKKSRNGLLGLTDSFYDEIKSLPLGEPVSEQSENFEKGGTEIKQQKKRKRRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="69244" e_stop="68794"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69244" e_stop="68794" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69244" stop="68794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69244" stop="68794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557045" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATGTGGTATTGCAGAGGAGGAATTGATATGACTGAGGTTCGAGTACATCGATATCCACCAATTTAGAGGCTTTAAGGTTGGAACGGTTAGGTGTTCCTTGGTCTCACGTAACATGTGTACAACTTTGTCATGATATTAATTTTTGGGGCTTTCATCGCTCTAAAATCTTGCATCGTATTCATTATTGTTGTCAGCAGTGATGACTGAAACCTAGATGGATAATTGAAAGTTGCTTGCTGCAAGGCTGAAGTGCGCTATGGCGGCTGTGGTTTGGTTCAACATCTAATTTCTTGAAAAGTAAGGGTCAGCTGATATGTAAAATGAAGCCTCTTATGGTAGTTGTATTATCATCTTTCACAAATCAAAAGGAAATTGTACTCCTTTCTAAACAATTCTTGTCGATAGGGTAACCAGTTCTTTTTGGACGGTCTGAGCAATATATTTTCAGG</gDNA_template>
            <first_frame> I  C  G  I  A  E  E  E  L  I  *  L  R  F  E  Y  I  D  I  H  Q  F  R  G  F  K  V  G  T  V  R  C  S  L  V  S  R  N  M  C  T  T  L  S  *  Y  *  F  L  G  L  S  S  L  *  N  L  A  S  Y  S  L  L  L  S  A  V  M  T  E  T  *  M  D  N  *  K  L  L  A  A  R  L  K  C  A  M  A  A  V  V  W  F  N  I  *  F  L  E  K  *  G  S  A  D  M  *  N  E  A  S  Y  G  S  C  I  I  I  F  H  K  S  K  G  N  C  T  P  F  *  T  I  L  V  D  R  V  T  S  S  F  W  T  V  *  A  I  Y  F  Q  </first_frame>
            <second_frame>  Y  V  V  L  Q  R  R  N  *  Y  D  *  G  S  S  T  S  I  S  T  N  L  E  A  L  R  L  E  R  L  G  V  P  W  S  H  V  T  C  V  Q  L  C  H  D  I  N  F  W  G  F  H  R  S  K  I  L  H  R  I  H  Y  C  C  Q  Q  *  *  L  K  P  R  W  I  I  E  S  C  L  L  Q  G  *  S  A  L  W  R  L  W  F  G  S  T  S  N  F  L  K  S  K  G  Q  L  I  C  K  M  K  P  L  M  V  V  V  L  S  S  F  T  N  Q  K  E  I  V  L  L  S  K  Q  F  L  S  I  G  *  P  V  L  F  G  R  S  E  Q  Y  I  F  R </second_frame>
            <third_frame>   M  W  Y  C  R  G  G  I  D  M  T  E  V  R  V  H  R  Y  P  P  I  *  R  L  *  G  W  N  G  *  V  F  L  G  L  T  *  H  V  Y  N  F  V  M  I  L  I  F  G  A  F  I  A  L  K  S  C  I  V  F  I  I  V  V  S  S  D  D  *  N  L  D  G  *  L  K  V  A  C  C  K  A  E  V  R  Y  G  G  C  G  L  V  Q  H  L  I  S  *  K  V  R  V  S  *  Y  V  K  *  S  L  L  W  *  L  Y  Y  H  L  S  Q  I  K  R  K  L  Y  S  F  L  N  N  S  C  R  *  G  N  Q  F  F  L  D  G  L  S  N  I  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0053M02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 87 chains have been computed
$ 
$ memory statistics:
$ 114488 bytes spliced alignments in total
$ 47 spliced alignments have been stored
$ 2435 bytes was the average size of a spliced alignment
$ 11912 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2382 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 101 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:26:50
-->
