<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:21:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327441" ref_strand="+" ref_description="SGN-E327441 [cTOC-19-F5]">
      <seq>agagactagttcgagtttttttttttttttttttgagataaaattcgtgaaaatacaatattcaaaagtatcttcgaatacattattataatattatgtctagcttatttattacctccttttatttttacttcccaataacaaagtgaaataaaataaaatcctataggaaaatccccatgcaattgttacccacaaacaaatccatttgttcagttgagttatcccttgttgcaccaatatatctgcgccactcgtgaaacaagtggaacttgttatcgttacgttcaatgtttcgcttatattgtccaataatttctcctttattgaattcggtaaatcccccaattggctgttatcgaacaactgaaccccacgaacgaagcatttcgtggggtctttgaattcgttcagcaacactgcttcatatgggtatttcacgagggagaggtaatgaaaccatatccagtacgatgggatcctatcgcgattcatgtagaatccactgaagaggaggaagtatccgagtaatgcaactacgattgtgtaaccgatcatgacatgaggaacgacactagagaggaaagtgacgaatgaattccccgcccagattgaagctagaacgacagagaagtagaacaaaaagcccgaagctccaccgtctaggccaacagcccagaaagtcagggctgcgaacgatagggagaggattatcaatgatggtagcgaaaccaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="-" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="21563" stop="3418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5980" g_stop="5950" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.613"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5949" i_stop="4425" i_length="1525">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4424" g_stop="3718" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="738" r_length="707" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="-" ref_id="SGN-E327441" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5980" e_stop="5950"/>
          <exon e_start="4424" e_stop="3718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATACCGTTTTGAAATTTTTTTAACATTTTATACCCTTTAGGCTCCGGACTCGAAGTTTTAAACAGTATAAGCAATATGTCGAATGTAAAAATAATGAATACTACATTTTTCTTTTAAGATTTTTTTGCTTGTTATGGGAAGTAAACAAGAAAAGGTAATAATAAGCTAGAGATAATATCATAGTAATGTACTCAAAGATAATTTCAGTACTTAATTTTTCTTTTTGTAATTTATTACATATTATTGATTTTTGGTATGTAAATTAAATAAGTGGAAAGTATTTCCTATGTTCTATTTATACAATTAAGAATACCAAAAAATATTTTTTTCTCTTAATTAAGAGTGATATAATAATTTGTTGCAATTATACCTTTATCATTTTGTAACTATTTTAAAAACTTATTAATGGAGTACTGTTTATACAATGTATAATATACTGTCAAATGTCAATGTATAAAACTTAAGGGGCTATTTAATTGATGAGATTATAAAGATAATAACTTTGAAATAAAATATGATATATATATATATATATATATATATATATAAATTATTAGAAGAAAATATGATATCTACATTAATTTTGTTAATAGTTCACCAATTATGTTCTTTCTTATTCAAAAGTTTCCAATTCTACACCTCATTAATTATTATCATTAGAGATGGTAGTGGAGTTACAAATACTTTTTCATCACTAATAAGATATCTCGAATTCGAGTTGCGTTACTGCTTCCCCTCATATTGGAACTTACCGAGAGCGAATTCAAATTTATTCAACATTATATCGAAAGCAAAATTTCTATTCCTTCCCTATAATTGAAAGAATTTTCTTGTTCATTATGTTTATCTATGTTCATACTACACAATTTGAATTATCATGGACAGCTTTCACTTTCCAATAGCTTATTTATGTTTCAACATATGTGACCTTTGCTTGTTGAATGTGCGAAATTAGGTCTTAGGTCTAAACTTACATCTTATAAAGAGTCCACCCATCTCATTAATCACCGAAGGTGGGACTTTTGTCATTCTTTAATACCCCACCTCACGCCCAGTGCTTAGAATCTGGTGCGTGGACAATTTGATTTTGGGGGTCCCAACATCAGGTGAGATTGACCCTGCTCTAATACCATGTGAAATTAGGTCTTAAGTCCAACTCACACCTCAAAAGCTAGCTCAAAGGGAGGATGATTGTCCAAGCCTTATAAGGAGTCCACCCATCTCATTAATCACCGATGTGAGACTTTTGTTATTCCTTAACAGAATGTTTAATTGTAAATAATTTCTGGATCAAAGATTACATAAACCCAATTAATTAGCCCACAGGACCAGCTTTACCATGACCTAATTTAATTAATTAGACGATCATCTTAAATATAATTAAAGAACCAATTAATCAAACCAAACTCTAACAAATCAACAACATATGCATGTTGAAATATTTGAAATTTAGTTGGACAAGAGTGGAGTACTAGTCATGTGGAGAAAGAGTGCAAGTTTAAAACATATATGCATGTTGACACCCTAGATGAAAGATTTTGTGTTCAAGTCCAGCTTGAGATAAAATTCGTGAAAATACAATATTCAAAAGTATCTTCGAATACATTATTATAATATTATGTCTAGCTTATTTATTACCTCCTTTTATTTTTACTTCCCAATAACAAAGTGAAATAAAATAAAATCCTATAGGAAAATCCCCATGCAATTGTTACCCACAAACAAATCCATTTGTTCAGTTGAGTTATCCCTTGTTGCACCAATATATCTGCGCCACTCGTGAAACAAGTGGAACTTGTTATCGTTACGTTCAATGTTTCGCTTATATTGTCCAATAATTTCTCCTTTATTGAATTCGGTAAATCCCCCAATTGGCTGTTATCGAACAACTGAACCCCACGAACGAAGCATTTCGTGGGGTCTTTGAATTCGTTCAGCAACACTGCTTCATATGGGTATTTCACGAGGGAGAGGTAATGAAACCATATCCAGTACGATGGGATCCTATCGCGATTCATGTAGAATCCACTGAAGAGGAGGAAGTATCCGAGTAATGCAACTACGATTGTGTAACCGATCATGACATGAGGAACGACACTAGAGAGGAAAGTGACGAATGAATTCCCCGCCCAGATTGAAGCTAGAACGACAGAGAAGTAGAACAAAAAGCCCGAAGCTCCACCGTCTAGGCCAACAGCCCAGAAAGTCAGGGCTGCGAACGATAGGGAGAGGATTATCAATGATGGTAGCGAAACCAAAGC</genome_strand>
        <mrna_strand>AGAGACTAGTTCGAGTTTTTTTTTTTTTTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGATAAAATTCGTGAAAATACAATATTCAAAAGTATCTTCGAATACATTATTATAATATTATGTCTAGCTTATTTATTACCTCCTTTTATTTTTACTTCCCAATAACAAAGTGAAATAAAATAAAATCCTATAGGAAAATCCCCATGCAATTGTTACCCACAAACAAATCCATTTGTTCAGTTGAGTTATCCCTTGTTGCACCAATATATCTGCGCCACTCGTGAAACAAGTGGAACTTGTTATCGTTACGTTCAATGTTTCGCTTATATTGTCCAATAATTTCTCCTTTATTGAATTCGGTAAATCCCCCAATTGGCTGTTATCGAACAACTGAACCCCACGAACGAAGCATTTCGTGGGGTCTTTGAATTCGTTCAGCAACACTGCTTCATATGGGTATTTCACGAGGGAGAGGTAATGAAACCATATCCAGTACGATGGGATCCTATCGCGATTCATGTAGAATCCACTGAAGAGGAGGAAGTATCCGAGTAATGCAACTACGATTGTGTAACCGATCATGACATGAGGAACGACACTAGAGAGGAAAGTGACGAATGAATTCCCCGCCCAGATTGAAGCTAGAACGACAGAGAAGTAGAACAAAAAGCCCGAAGCTCCACCGTCTAGGCCAACAGCCCAGAAAGTCAGGGCTGCGAACGATAGGGAGAGGATTATCAATGATGGTAGCGAAACCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325576" ref_strand="+" ref_description="SGN-E325576 [cTOC-15-B17]">
      <seq>agagactagttcgagtttttttttttttttttttgagataaaattcgtgaaaatacaatattcaaaagtatcttcgaatacattattataatattatgtctagcttatttattacctccttttatttttacttcccaataacaaagtgaaataaaataaaatcctataggaaaatccccatgcaattgttacccacaaacaaatccatttgttcagttgagttatcccttgttgcaccaatatatctgcgccactcgtgaaacaagtggaacttgttatcgttacgttcaatgtttcgcttatattgtccaataatttctcctttattgaattcggtaaatcccccaattggctgttatcgaacaactgaaccccacgaacaaagcatttcgtggggtctttgaattcgttcagcaacactgcttcatatgggtatttcacgagggagaggtaatgaaaccatatccagtacgatgggatcctatcgcgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="-" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="21563" stop="3664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5980" g_stop="5950" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.613"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5949" i_stop="4425" i_length="1525">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4424" g_stop="3964" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="492" r_length="461" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="-" ref_id="SGN-E325576" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5980" e_stop="5950"/>
          <exon e_start="4424" e_stop="3964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATACCGTTTTGAAATTTTTTTAACATTTTATACCCTTTAGGCTCCGGACTCGAAGTTTTAAACAGTATAAGCAATATGTCGAATGTAAAAATAATGAATACTACATTTTTCTTTTAAGATTTTTTTGCTTGTTATGGGAAGTAAACAAGAAAAGGTAATAATAAGCTAGAGATAATATCATAGTAATGTACTCAAAGATAATTTCAGTACTTAATTTTTCTTTTTGTAATTTATTACATATTATTGATTTTTGGTATGTAAATTAAATAAGTGGAAAGTATTTCCTATGTTCTATTTATACAATTAAGAATACCAAAAAATATTTTTTTCTCTTAATTAAGAGTGATATAATAATTTGTTGCAATTATACCTTTATCATTTTGTAACTATTTTAAAAACTTATTAATGGAGTACTGTTTATACAATGTATAATATACTGTCAAATGTCAATGTATAAAACTTAAGGGGCTATTTAATTGATGAGATTATAAAGATAATAACTTTGAAATAAAATATGATATATATATATATATATATATATATATATAAATTATTAGAAGAAAATATGATATCTACATTAATTTTGTTAATAGTTCACCAATTATGTTCTTTCTTATTCAAAAGTTTCCAATTCTACACCTCATTAATTATTATCATTAGAGATGGTAGTGGAGTTACAAATACTTTTTCATCACTAATAAGATATCTCGAATTCGAGTTGCGTTACTGCTTCCCCTCATATTGGAACTTACCGAGAGCGAATTCAAATTTATTCAACATTATATCGAAAGCAAAATTTCTATTCCTTCCCTATAATTGAAAGAATTTTCTTGTTCATTATGTTTATCTATGTTCATACTACACAATTTGAATTATCATGGACAGCTTTCACTTTCCAATAGCTTATTTATGTTTCAACATATGTGACCTTTGCTTGTTGAATGTGCGAAATTAGGTCTTAGGTCTAAACTTACATCTTATAAAGAGTCCACCCATCTCATTAATCACCGAAGGTGGGACTTTTGTCATTCTTTAATACCCCACCTCACGCCCAGTGCTTAGAATCTGGTGCGTGGACAATTTGATTTTGGGGGTCCCAACATCAGGTGAGATTGACCCTGCTCTAATACCATGTGAAATTAGGTCTTAAGTCCAACTCACACCTCAAAAGCTAGCTCAAAGGGAGGATGATTGTCCAAGCCTTATAAGGAGTCCACCCATCTCATTAATCACCGATGTGAGACTTTTGTTATTCCTTAACAGAATGTTTAATTGTAAATAATTTCTGGATCAAAGATTACATAAACCCAATTAATTAGCCCACAGGACCAGCTTTACCATGACCTAATTTAATTAATTAGACGATCATCTTAAATATAATTAAAGAACCAATTAATCAAACCAAACTCTAACAAATCAACAACATATGCATGTTGAAATATTTGAAATTTAGTTGGACAAGAGTGGAGTACTAGTCATGTGGAGAAAGAGTGCAAGTTTAAAACATATATGCATGTTGACACCCTAGATGAAAGATTTTGTGTTCAAGTCCAGCTTGAGATAAAATTCGTGAAAATACAATATTCAAAAGTATCTTCGAATACATTATTATAATATTATGTCTAGCTTATTTATTACCTCCTTTTATTTTTACTTCCCAATAACAAAGTGAAATAAAATAAAATCCTATAGGAAAATCCCCATGCAATTGTTACCCACAAACAAATCCATTTGTTCAGTTGAGTTATCCCTTGTTGCACCAATATATCTGCGCCACTCGTGAAACAAGTGGAACTTGTTATCGTTACGTTCAATGTTTCGCTTATATTGTCCAATAATTTCTCCTTTATTGAATTCGGTAAATCCCCCAATTGGCTGTTATCGAACAACTGAACCCCACGAACGAAGCATTTCGTGGGGTCTTTGAATTCGTTCAGCAACACTGCTTCATATGGGTATTTCACGAGGGAGAGGTAATGAAACCATATCCAGTACGATGGGATCCTATCGCGATT</genome_strand>
        <mrna_strand>AGAGACTAGTTCGAGTTTTTTTTTTTTTTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGATAAAATTCGTGAAAATACAATATTCAAAAGTATCTTCGAATACATTATTATAATATTATGTCTAGCTTATTTATTACCTCCTTTTATTTTTACTTCCCAATAACAAAGTGAAATAAAATAAAATCCTATAGGAAAATCCCCATGCAATTGTTACCCACAAACAAATCCATTTGTTCAGTTGAGTTATCCCTTGTTGCACCAATATATCTGCGCCACTCGTGAAACAAGTGGAACTTGTTATCGTTACGTTCAATGTTTCGCTTATATTGTCCAATAATTTCTCCTTTATTGAATTCGGTAAATCCCCCAATTGGCTGTTATCGAACAACTGAACCCCACGAACAAAGCATTTCGTGGGGTCTTTGAATTCGTTCAGCAACACTGCTTCATATGGGTATTTCACGAGGGAGAGGTAATGAAACCATATCCAGTACGATGGGATCCTATCGCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358119" ref_strand="+" ref_description="SGN-E358119 [cLHT-23-F10]">
      <seq>ttgcgtacctctttatgatcggagacaaatggtagaaatgtcatcgccgacgtttgctcagttgttgaacaacgtcggagataatgtcaccggcgacgaaactggaggttcagttcaccaagttctgacgatggaactgcctctgcagcaatcaattccatttgtattgtcattcagtaacctcacatacaacgtgagagtccgccggaaaaatattttgccggcgatctccggcagcaggaaccggagagatgaaccgcgatgcgcggggacgaaggtgcttttgaatgatatatcaggagaggcgcgtgacggagaactactcgcggtgctcggcgcgtctggttcggggaaatcgacgttgatcgatgctttagctaatcgaatttcgaaagatagcttgaaaggggagatgaaattgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="-" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="9943" stop="8920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9643" g_stop="9220" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="-" ref_id="SGN-E358119" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9643" e_stop="9220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCGTACCTCTTTATGATCGGAGACAAACGGTAGAAATGTCATCGCCGACGTTTGCTCAGTTGTTGAACAACGTCGGAGATGATGTCACCGGCGACGAAACTGGAGGTTCAGTTCACCAAATTCTGACAATGGAACTGCCTCTGCAGCAATCGATTCCATTTGTATTGTCATTCAGTAACCTCACATACAGCGTGAGAGTCCGCCGGAAAAATATTTTTCCGGCGATGTCCGGCCGCCGGAACCGGACAGATGAACCGCGGTGCACGAGGACGAAGGTGCTTTTGAATGATATATCAGGAGAGGCGCGTGACGGAGAACTACTCGCGGTGCTCGGCGCGTCTGGTTCGGGGAAATCGACCTTGATCGATGCTTTAGCTAATCGAATTTCGAAAGATAGCTTGAAAGGGGAGATGAAATTGAAC</genome_strand>
        <mrna_strand>TTGCGTACCTCTTTATGATCGGAGACAAATGGTAGAAATGTCATCGCCGACGTTTGCTCAGTTGTTGAACAACGTCGGAGATAATGTCACCGGCGACGAAACTGGAGGTTCAGTTCACCAAGTTCTGACGATGGAACTGCCTCTGCAGCAATCAATTCCATTTGTATTGTCATTCAGTAACCTCACATACAACGTGAGAGTCCGCCGGAAAAATATTTTGCCGGCGATCTCCGGCAGCAGGAACCGGAGAGATGAACCGCGATGCGCGGGGACGAAGGTGCTTTTGAATGATATATCAGGAGAGGCGCGTGACGGAGAACTACTCGCGGTGCTCGGCGCGTCTGGTTCGGGGAAATCGACGTTGATCGATGCTTTAGCTAATCGAATTTCGAAAGATAGCTTGAAAGGGGAGATGAAATTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308326" ref_strand="+" ref_description="SGN-E308326 [cLEZ-6-M5]">
      <seq>ttttcttcttttcatagacaaacttctcatcatataaaaaaataaaaaatgagtagaattgttgctcaaaatgtatcaccagtaagagattgcgtacctctttatgatcggagacaaacggtagaaatgtcatcgccgacgtttgctcagttgttgaacaacgtcggagatgatgtcaccggcgacgaaactggaggttcagttcaccaaattctgacaatggaactgcctctgcagcaatcgattccatttgtattgtcattcagtaacctcacatacagcgtgagagtccgccggaaaaatatttttccggcgatgtccggccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="-" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="10032" stop="9106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9732" g_stop="9406" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="-" ref_id="SGN-E308326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9732" e_stop="9406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCTTTTCATAGACAAACTTCTCATCATATAAAAAAATAAAAAATGAGTAGAATTGTTGCTCAAAATGTATCACCAGTAAGAGATTGCGTACCTCTTTATGATCGGAGACAAACGGTAGAAATGTCATCGCCGACGTTTGCTCAGTTGTTGAACAACGTCGGAGATGATGTCACCGGCGACGAAACTGGAGGTTCAGTTCACCAAATTCTGACAATGGAACTGCCTCTGCAGCAATCGATTCCATTTGTATTGTCATTCAGTAACCTCACATACAGCGTGAGAGTCCGCCGGAAAAATATTTTTCCGGCGATGTCCGGCCGC</genome_strand>
        <mrna_strand>TTTTCTTCTTTTCATAGACAAACTTCTCATCATATAAAAAAATAAAAAATGAGTAGAATTGTTGCTCAAAATGTATCACCAGTAAGAGATTGCGTACCTCTTTATGATCGGAGACAAACGGTAGAAATGTCATCGCCGACGTTTGCTCAGTTGTTGAACAACGTCGGAGATGATGTCACCGGCGACGAAACTGGAGGTTCAGTTCACCAAATTCTGACAATGGAACTGCCTCTGCAGCAATCGATTCCATTTGTATTGTCATTCAGTAACCTCACATACAGCGTGAGAGTCCGCCGGAAAAATATTTTTCCGGCGATGTCCGGCCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734167" ref_strand="+" ref_description="SGN-E734167 [LB11DH02]">
      <seq>caataataaccagaggcactgaaagcttcataaaaaataaaaaaaatggcgaccttaacttcttctactctgcaactcacaaaatcaaaccctttcttctcaaaatctcctctcaaattccacgcgccgtcgtactcttccttcactgtacgcgccaccactgaagaatcttcaccttccgacacagacgaacaaaccaccgtcgattcatcctccgatcccgacagtttcgagaatcggctctcccaagtccgtctccggtaccgtagtggaacagggaagaaagcggaggtgcgaaaaactcgaaagggcaaaaaaggttcatctggatccggatccgggtcgagcgtgtttctcccaccaattcctctaaaggaacctgtttccgaaggtttacccgttgaattcgggtttagtccgttttcggaacgggtcaatggacggatcgccatgcttggattatccgcattgctgttggtggagcttgcaacaggtaagagtgtaattaattatcatacgccggcgattgtgttcattcaggtttattttgtcgccgccgtagcggcggtgtatttgaagaatgagaaagagaaagttagcgtttggcctaaatagttgagctgccattgttgaattctctgagatttttttttgaattggatgtctgtatgataaacttctcacagcttgttttattttagtatatatcttattgtctcgaagcaacagtaaaatttactccttttatcatttataaattacgagtttgagttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="+" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="21060" stop="22431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21356" g_stop="22131" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="776" r_length="776" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="+" ref_id="SGN-E734167" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21356" e_stop="22131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAATAACCAGAGGCACTGAAAGCTTCATAAAAAATAAAAAAAATGGCGACCTTAACTTCTTCTACTCTGCAACTCACAAAATCAAACCCTTTCTTCTCAAAATCTCCTCTCAAATTCCACGCGCCGTCGTACTCTTCCTTCACTGTACGCGCCACCACTGAAGAATCTTCACCTTCCGACACAGACGAACAAACCACCGTCGATTCATCCTCCGATCCCGACAGTTTCGAGAATCGGCTCTCCCAAGTCCGTCTCCGGTACCGTAGTGGAACAGGGAAGAAAGCGGAGGTGCGAAAAACTCGAAAGGGCAAAAAAGGTTCATCTGGATCCGGATCCGGGTCGAGCGTGTTTCTCCCACCAATTCCTCTAAAGGAACCTGTTTCCGAAGGTTTACCCGTTGAATTCGGGTTTAGTCCGTTTTCGGAACGGGTCAATGGACGGATCGCCATGCTTGGATTATCCGCATTGCTGTTGGTGGAGCTTGCAACAGGTAAGAGTGTAATTAATTATCATACGCCGGCGATTGTGTTCATTCAGGTTTATTTTGTCGCCGCCGTAGCGGCGGTGTATTTGAAGAATGAGAAAGAGAAAGTTAGCGTTTGGCCTAAATAGTTGAGCTGCCATTGTTGAATTCTCTGAGATTTTTTTTTGAATTGGATGTCTGTATGATAAACTTCTCACAGCTTGTTTTATTTTAGTATATATCTTATTGTCTCGAAGCAACAGTAAAATTTACTCCTTTTATCATTTATAAATTACGAGTTTGAGTTGTA</genome_strand>
        <mrna_strand>CAATAATAACCAGAGGCACTGAAAGCTTCATAAAAAATAAAAAAAATGGCGACCTTAACTTCTTCTACTCTGCAACTCACAAAATCAAACCCTTTCTTCTCAAAATCTCCTCTCAAATTCCACGCGCCGTCGTACTCTTCCTTCACTGTACGCGCCACCACTGAAGAATCTTCACCTTCCGACACAGACGAACAAACCACCGTCGATTCATCCTCCGATCCCGACAGTTTCGAGAATCGGCTCTCCCAAGTCCGTCTCCGGTACCGTAGTGGAACAGGGAAGAAAGCGGAGGTGCGAAAAACTCGAAAGGGCAAAAAAGGTTCATCTGGATCCGGATCCGGGTCGAGCGTGTTTCTCCCACCAATTCCTCTAAAGGAACCTGTTTCCGAAGGTTTACCCGTTGAATTCGGGTTTAGTCCGTTTTCGGAACGGGTCAATGGACGGATCGCCATGCTTGGATTATCCGCATTGCTGTTGGTGGAGCTTGCAACAGGTAAGAGTGTAATTAATTATCATACGCCGGCGATTGTGTTCATTCAGGTTTATTTTGTCGCCGCCGTAGCGGCGGTGTATTTGAAGAATGAGAAAGAGAAAGTTAGCGTTTGGCCTAAATAGTTGAGCTGCCATTGTTGAATTCTCTGAGATTTTTTTTTGAATTGGATGTCTGTATGATAAACTTCTCACAGCTTGTTTTATTTTAGTATATATCTTATTGTCTCGAAGCAACAGTAAAATTTACTCCTTTTATCATTTATAAATTACGAGTTTGAGTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291680" ref_strand="+" ref_description="SGN-E291680 [cLET-6-M21]">
      <seq>aaaaaataaaaaaaatggcgaccttaacttcttctactctgcaactcacaaaatcaaaccctttcttctcaaaatctcctctcaaattccacgcgccgtcgtactcttccttcactgtacgcgccaccactgaagaatcttcaccttccgacacagacgaacaaaccaccgtcgattcatcctccgatcccgacagtttcgagaatcggctctcccaagtccgtctccggtaccgtagtggaacagggaagaaagcggaggtgcgaaaaactcgaaagggcaaaaaaggttcatctggatccggatccgggtcgagcgtgtttctcccaccaattcctctaaaggaacctgtttccgaaggtttacccgttgaattcgggtttagtccgttttcggaacgggtcaatggacggatcgccatgcttggattatccgcattgctgttggtggagcttgcaacaggtaagagtgtaattaattatcatacgccggcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="+" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="21087" stop="22181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21387" g_stop="21881" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="+" ref_id="SGN-E291680" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21387" e_stop="21881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATAAAAAAAATGGCGACCTTAACTTCTTCTACTCTGCAACTCACAAAATCAAACCCTTTCTTCTCAAAATCTCCTCTCAAATTCCACGCGCCGTCGTACTCTTCCTTCACTGTACGCGCCACCACTGAAGAATCTTCACCTTCCGACACAGACGAACAAACCACCGTCGATTCATCCTCCGATCCCGACAGTTTCGAGAATCGGCTCTCCCAAGTCCGTCTCCGGTACCGTAGTGGAACAGGGAAGAAAGCGGAGGTGCGAAAAACTCGAAAGGGCAAAAAAGGTTCATCTGGATCCGGATCCGGGTCGAGCGTGTTTCTCCCACCAATTCCTCTAAAGGAACCTGTTTCCGAAGGTTTACCCGTTGAATTCGGGTTTAGTCCGTTTTCGGAACGGGTCAATGGACGGATCGCCATGCTTGGATTATCCGCATTGCTGTTGGTGGAGCTTGCAACAGGTAAGAGTGTAATTAATTATCATACGCCGGCGA</genome_strand>
        <mrna_strand>AAAAAATAAAAAAAATGGCGACCTTAACTTCTTCTACTCTGCAACTCACAAAATCAAACCCTTTCTTCTCAAAATCTCCTCTCAAATTCCACGCGCCGTCGTACTCTTCCTTCACTGTACGCGCCACCACTGAAGAATCTTCACCTTCCGACACAGACGAACAAACCACCGTCGATTCATCCTCCGATCCCGACAGTTTCGAGAATCGGCTCTCCCAAGTCCGTCTCCGGTACCGTAGTGGAACAGGGAAGAAAGCGGAGGTGCGAAAAACTCGAAAGGGCAAAAAAGGTTCATCTGGATCCGGATCCGGGTCGAGCGTGTTTCTCCCACCAATTCCTCTAAAGGAACCTGTTTCCGAAGGTTTACCCGTTGAATTCGGGTTTAGTCCGTTTTCGGAACGGGTCAATGGACGGATCGCCATGCTTGGATTATCCGCATTGCTGTTGGTGGAGCTTGCAACAGGTAAGAGTGTAATTAATTATCATACGCCGGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290146" ref_strand="+" ref_description="SGN-E290146 [cLET-5-L24]">
      <seq>aaataaaaaaaatggcgaccttaacttatggtactctgcaactcacaaaatcaaaccctttcttctcaaaatctcctctcaaattccacgcgccgtcgtactcttccttcactgtacgcgccaccactgaagaatcttcaccttccgacacagacgaacaaaccaccgtcgattcatcctccgatcccgacagtttcgagaatcggctctcccaagtccgtctccggtaccgtagtggaacagggaagaaagcggaggtgcgaaaaactcgaaagggcaaaaaaggttcatctggatccggatccgggtcgagcgtgtttctcccaccaattcctctaaaggaacctgtttccgaaggtttacccgttgaattcgggtttagtccgttttcggaacgggtcaatggacggatcgccatgcttggattatccgcattgctgttggtggagcttgcaacaggtaagagtgtaattaattatcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="+" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="21090" stop="22173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21390" g_stop="21873" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="+" ref_id="SGN-E290146" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21390" e_stop="21873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAAAAAAATGGCGACCTTAACTTCTTCTACTCTGCAACTCACAAAATCAAACCCTTTCTTCTCAAAATCTCCTCTCAAATTCCACGCGCCGTCGTACTCTTCCTTCACTGTACGCGCCACCACTGAAGAATCTTCACCTTCCGACACAGACGAACAAACCACCGTCGATTCATCCTCCGATCCCGACAGTTTCGAGAATCGGCTCTCCCAAGTCCGTCTCCGGTACCGTAGTGGAACAGGGAAGAAAGCGGAGGTGCGAAAAACTCGAAAGGGCAAAAAAGGTTCATCTGGATCCGGATCCGGGTCGAGCGTGTTTCTCCCACCAATTCCTCTAAAGGAACCTGTTTCCGAAGGTTTACCCGTTGAATTCGGGTTTAGTCCGTTTTCGGAACGGGTCAATGGACGGATCGCCATGCTTGGATTATCCGCATTGCTGTTGGTGGAGCTTGCAACAGGTAAGAGTGTAATTAATTATCATAC</genome_strand>
        <mrna_strand>AAATAAAAAAAATGGCGACCTTAACTTATGGTACTCTGCAACTCACAAAATCAAACCCTTTCTTCTCAAAATCTCCTCTCAAATTCCACGCGCCGTCGTACTCTTCCTTCACTGTACGCGCCACCACTGAAGAATCTTCACCTTCCGACACAGACGAACAAACCACCGTCGATTCATCCTCCGATCCCGACAGTTTCGAGAATCGGCTCTCCCAAGTCCGTCTCCGGTACCGTAGTGGAACAGGGAAGAAAGCGGAGGTGCGAAAAACTCGAAAGGGCAAAAAAGGTTCATCTGGATCCGGATCCGGGTCGAGCGTGTTTCTCCCACCAATTCCTCTAAAGGAACCTGTTTCCGAAGGTTTACCCGTTGAATTCGGGTTTAGTCCGTTTTCGGAACGGGTCAATGGACGGATCGCCATGCTTGGATTATCCGCATTGCTGTTGGTGGAGCTTGCAACAGGTAAGAGTGTAATTAATTATCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287557" ref_strand="+" ref_description="SGN-E287557 [cLES-9-N3]">
      <seq>aaatggcgaccttaacttcttctactctgcaactcacaaaatcaaaccctttcttctcaaaatctcctctcaaattccacgcgccgtcgtactcttccttcactgtacgcgccaccactgaagaatcttcaccttccgacacagacgaacaaaccaccgtcgattcatcctccgatcccgacagtttcgagaatcggctctcccaagtccgtctccggtaccgtagtggaacagggaagaaagcggaggtgcgaaaaactcgaaagggcaaaaaaggttcatctggatccggatccgggtcgagcgtgtttctcccaccaattcctctaaaggaacctgtttccgaaggtttacccgttgaattcgggtttagtccgttttcggaacgggtcaatggacggatcgccatgcttggattatccgcattgctgttggtggagcttgcaacaggtaagagtgtaattaattatcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="+" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="21099" stop="22173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21399" g_stop="21873" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="+" ref_id="SGN-E287557" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21399" e_stop="21873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCGACCTTAACTTCTTCTACTCTGCAACTCACAAAATCAAACCCTTTCTTCTCAAAATCTCCTCTCAAATTCCACGCGCCGTCGTACTCTTCCTTCACTGTACGCGCCACCACTGAAGAATCTTCACCTTCCGACACAGACGAACAAACCACCGTCGATTCATCCTCCGATCCCGACAGTTTCGAGAATCGGCTCTCCCAAGTCCGTCTCCGGTACCGTAGTGGAACAGGGAAGAAAGCGGAGGTGCGAAAAACTCGAAAGGGCAAAAAAGGTTCATCTGGATCCGGATCCGGGTCGAGCGTGTTTCTCCCACCAATTCCTCTAAAGGAACCTGTTTCCGAAGGTTTACCCGTTGAATTCGGGTTTAGTCCGTTTTCGGAACGGGTCAATGGACGGATCGCCATGCTTGGATTATCCGCATTGCTGTTGGTGGAGCTTGCAACAGGTAAGAGTGTAATTAATTATCATAC</genome_strand>
        <mrna_strand>AAATGGCGACCTTAACTTCTTCTACTCTGCAACTCACAAAATCAAACCCTTTCTTCTCAAAATCTCCTCTCAAATTCCACGCGCCGTCGTACTCTTCCTTCACTGTACGCGCCACCACTGAAGAATCTTCACCTTCCGACACAGACGAACAAACCACCGTCGATTCATCCTCCGATCCCGACAGTTTCGAGAATCGGCTCTCCCAAGTCCGTCTCCGGTACCGTAGTGGAACAGGGAAGAAAGCGGAGGTGCGAAAAACTCGAAAGGGCAAAAAAGGTTCATCTGGATCCGGATCCGGGTCGAGCGTGTTTCTCCCACCAATTCCTCTAAAGGAACCTGTTTCCGAAGGTTTACCCGTTGAATTCGGGTTTAGTCCGTTTTCGGAACGGGTCAATGGACGGATCGCCATGCTTGGATTATCCGCATTGCTGTTGGTGGAGCTTGCAACAGGTAAGAGTGTAATTAATTATCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277088" ref_strand="+" ref_description="SGN-E277088 [cLEN-22-H2]">
      <seq>aatggcgaccttaacttcttctactctgcaactcacaaaatcaaaccctttcttctcaaaatctcctctcaaattccacgcgccgtcgtactcttccttcactgtacgcgccaccactgaagaatcttcaccttccgacacagacgaacaaaccaccgtcgattcatcctccgatcccgacagtttcgagaatcggctctcccaagtccgtctccggtaccgtagtggaacagggaagaaagcggaggtgcgaaaaactcgaaagggcaaaaaaggttcatctggatccggatccgggtcgagcgtgtttctcccaccaattcctctaaaggaacctgtttccgaaggtttacccgttgaattcgggtttagtccgttttcggaacgggtcaatggacggatcgccatgcttggattatccgcattgctgttggtggagcttgcaacaggtaagagtgtaattaattatcatacgccggcgattgtgttcattcaggtttattttgtcgccgccgtagcggcggtgtatttgaagaatgagaaagagaaagttagcgtttggcctaaatagttgagctgccattgttgaattctctgagatttttttttgaattggatgtctgtatgataaacttctcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="+" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="21100" stop="22340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21400" g_stop="22040" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="+" ref_id="SGN-E277088" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21400" e_stop="22040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCGACCTTAACTTCTTCTACTCTGCAACTCACAAAATCAAACCCTTTCTTCTCAAAATCTCCTCTCAAATTCCACGCGCCGTCGTACTCTTCCTTCACTGTACGCGCCACCACTGAAGAATCTTCACCTTCCGACACAGACGAACAAACCACCGTCGATTCATCCTCCGATCCCGACAGTTTCGAGAATCGGCTCTCCCAAGTCCGTCTCCGGTACCGTAGTGGAACAGGGAAGAAAGCGGAGGTGCGAAAAACTCGAAAGGGCAAAAAAGGTTCATCTGGATCCGGATCCGGGTCGAGCGTGTTTCTCCCACCAATTCCTCTAAAGGAACCTGTTTCCGAAGGTTTACCCGTTGAATTCGGGTTTAGTCCGTTTTCGGAACGGGTCAATGGACGGATCGCCATGCTTGGATTATCCGCATTGCTGTTGGTGGAGCTTGCAACAGGTAAGAGTGTAATTAATTATCATACGCCGGCGATTGTGTTCATTCAGGTTTATTTTGTCGCCGCCGTAGCGGCGGTGTATTTGAAGAATGAGAAAGAGAAAGTTAGCGTTTGGCCTAAATAGTTGAGCTGCCATTGTTGAATTCTCTGAGATTTTTTTTTGAATTGGATGTCTGTATGATAAACTTCTCACA</genome_strand>
        <mrna_strand>AATGGCGACCTTAACTTCTTCTACTCTGCAACTCACAAAATCAAACCCTTTCTTCTCAAAATCTCCTCTCAAATTCCACGCGCCGTCGTACTCTTCCTTCACTGTACGCGCCACCACTGAAGAATCTTCACCTTCCGACACAGACGAACAAACCACCGTCGATTCATCCTCCGATCCCGACAGTTTCGAGAATCGGCTCTCCCAAGTCCGTCTCCGGTACCGTAGTGGAACAGGGAAGAAAGCGGAGGTGCGAAAAACTCGAAAGGGCAAAAAAGGTTCATCTGGATCCGGATCCGGGTCGAGCGTGTTTCTCCCACCAATTCCTCTAAAGGAACCTGTTTCCGAAGGTTTACCCGTTGAATTCGGGTTTAGTCCGTTTTCGGAACGGGTCAATGGACGGATCGCCATGCTTGGATTATCCGCATTGCTGTTGGTGGAGCTTGCAACAGGTAAGAGTGTAATTAATTATCATACGCCGGCGATTGTGTTCATTCAGGTTTATTTTGTCGCCGCCGTAGCGGCGGTGTATTTGAAGAATGAGAAAGAGAAAGTTAGCGTTTGGCCTAAATAGTTGAGCTGCCATTGTTGAATTCTCTGAGATTTTTTTTTGAATTGGATGTCTGTATGATAAACTTCTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280068" ref_strand="+" ref_description="SGN-E280068 [cLEL-7-B24](-)">
      <seq>gatccggatccagatgaaccttttttgccctttcgagtttttcgcacctccgctttcttccctgttccactacggtaccggagacggacttgggagagccgattctcgaaactgtcgggatcggaggatgaatcgacggtggtttgttcgtctgtgtcggaaggtgaagattcttcagtggtggcgcgtacagtgaaggaagagtacgacggcgcgtggaatttgagaggacgcctttgagaagaaagggtttgattttgtgagttgcagagtagaagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="-" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="21993" stop="21117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21693" g_stop="21410" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="-" ref_id="SGN-E280068" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21693" e_stop="21410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCGGATCCAGATGAACCTTTTTTGCCCTTTCGAGTTTTTCGCACCTCCGCTTTCTTCCCTGTTCCACTACGGTACCGGAGACGGACTTGGGAGAGCCGATTCTCGAAACTGTCGGGATCGGAGGATGAATCGACGGTGGTTTGTTCGTCTGTGTCGGAAGGTGAAGATTCTTCAGTGGTGGCGCGTACAGTGAAGGAAGAGTACGACGGCGCGTGGAATTTGAGAGGA-GATTTTGAGAAGAAAGGGTTTGATTTTGTGAGTTGCAGAGTAGAAGAAGTTAA</genome_strand>
        <mrna_strand>GATCCGGATCCAGATGAACCTTTTTTGCCCTTTCGAGTTTTTCGCACCTCCGCTTTCTTCCCTGTTCCACTACGGTACCGGAGACGGACTTGGGAGAGCCGATTCTCGAAACTGTCGGGATCGGAGGATGAATCGACGGTGGTTTGTTCGTCTGTGTCGGAAGGTGAAGATTCTTCAGTGGTGGCGCGTACAGTGAAGGAAGAGTACGACGGCGCGTGGAATTTGAGAGGACGCCTTTGAGAAGAAAGGGTTTGATTTTGTGAGTTGCAGAGTAGAAGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343336" ref_strand="+" ref_description="SGN-E343336 [cTOF-17-N8]">
      <seq>acttcttctactctgcaactcacaaaatcaaaccctttcttctcaaaatctcctctcaaattccacgcgccgtcgtactcttccttcactgtacgcgccaccactgaagaatcttcaccttccgacacagacgaacaaaccaccgtcgattcatcctccgatcccgacagtttcgagaatcggctctcccaagtccgtctccggtaccgtagtggaacagggaagaaagcggaggtgcgaaaaactcgaaagggcaaaaaaggttcatctggatccggatccgggtcgagcgtgtttctcccaccaattcctctaaaggaacctgtttccgaaggtttacccgttgaattcgggtttagtccgttttcggaacgggtcaatggacggatcgccatgcttggattatccgcattgctgttggtggagcttgcaacaggtaagagtgtaattaattatcatacgccggcgattgtgttcattcaggtttattttgtcgccgccgtagcggcggtgtatttgaagaatgagaaagagaaagttagcgtttggcctaaatagttgagctgccattgttgaattctctgagatttttttttgaattggatgtctgtatgataaacttctcacagcttgttttattttagtatatatcttattgtctcgaagcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="+" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="21113" stop="22383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21413" g_stop="22083" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="+" ref_id="SGN-E343336" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21413" e_stop="22083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTTCTACTCTGCAACTCACAAAATCAAACCCTTTCTTCTCAAAATCTCCTCTCAAATTCCACGCGCCGTCGTACTCTTCCTTCACTGTACGCGCCACCACTGAAGAATCTTCACCTTCCGACACAGACGAACAAACCACCGTCGATTCATCCTCCGATCCCGACAGTTTCGAGAATCGGCTCTCCCAAGTCCGTCTCCGGTACCGTAGTGGAACAGGGAAGAAAGCGGAGGTGCGAAAAACTCGAAAGGGCAAAAAAGGTTCATCTGGATCCGGATCCGGGTCGAGCGTGTTTCTCCCACCAATTCCTCTAAAGGAACCTGTTTCCGAAGGTTTACCCGTTGAATTCGGGTTTAGTCCGTTTTCGGAACGGGTCAATGGACGGATCGCCATGCTTGGATTATCCGCATTGCTGTTGGTGGAGCTTGCAACAGGTAAGAGTGTAATTAATTATCATACGCCGGCGATTGTGTTCATTCAGGTTTATTTTGTCGCCGCCGTAGCGGCGGTGTATTTGAAGAATGAGAAAGAGAAAGTTAGCGTTTGGCCTAAATAGTTGAGCTGCCATTGTTGAATTCTCTGAGATTTTTTTTTGAATTGGATGTCTGTATGATAAACTTCTCACAGCTTGTTTTATTTTAGTATATATCTTATTGTCTCGAAGCAACA</genome_strand>
        <mrna_strand>ACTTCTTCTACTCTGCAACTCACAAAATCAAACCCTTTCTTCTCAAAATCTCCTCTCAAATTCCACGCGCCGTCGTACTCTTCCTTCACTGTACGCGCCACCACTGAAGAATCTTCACCTTCCGACACAGACGAACAAACCACCGTCGATTCATCCTCCGATCCCGACAGTTTCGAGAATCGGCTCTCCCAAGTCCGTCTCCGGTACCGTAGTGGAACAGGGAAGAAAGCGGAGGTGCGAAAAACTCGAAAGGGCAAAAAAGGTTCATCTGGATCCGGATCCGGGTCGAGCGTGTTTCTCCCACCAATTCCTCTAAAGGAACCTGTTTCCGAAGGTTTACCCGTTGAATTCGGGTTTAGTCCGTTTTCGGAACGGGTCAATGGACGGATCGCCATGCTTGGATTATCCGCATTGCTGTTGGTGGAGCTTGCAACAGGTAAGAGTGTAATTAATTATCATACGCCGGCGATTGTGTTCATTCAGGTTTATTTTGTCGCCGCCGTAGCGGCGGTGTATTTGAAGAATGAGAAAGAGAAAGTTAGCGTTTGGCCTAAATAGTTGAGCTGCCATTGTTGAATTCTCTGAGATTTTTTTTTGAATTGGATGTCTGTATGATAAACTTCTCACAGCTTGTTTTATTTTAGTATATATCTTATTGTCTCGAAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310561" ref_strand="+" ref_description="SGN-E310561 [cLEZ-19-K4]">
      <seq>ttctactctgcaactcacaaaatcaaaccctttcttctcaaaatgtgggtctcaaattcatggaaccgtcgtactcttccttcactgtacgcgccaccactgaagaatcttcaccttccgacacagacgaacaaaccaccgtcgattcatcctccgatcccgacagtttcgagaatcggctctcccaagtccgtctccggtaccgtagtggaacagggaagaaagcggaggtgcgaaaaactcgaaagggcaaaaaaggttcatctggatccggatccgggtcgagcgtgtttctcccaccaattcctctaaaggaacctgtttccgaaggtttacccgttgaattcgggtttagtccgttttcggaacgggtcaatggacggatcgccatgcttggattatccgcattgctgttggtggagcttgcaacaggtaagagtgtaattaattatcatacgccggcgattgtgttcattcaggtttattttgtcgccgccgtagcggcggtgtatttgaagaatgagaaagagaaagttagcgtttggcctaaatagttgagctgccattgttgaattctctgagatttttttttgaattggatgtctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="+" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="21118" stop="22323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21418" g_stop="22023" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="+" ref_id="SGN-E310561" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21418" e_stop="22023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACTCTGCAACTCACAAAATCAAACCCTTTCTTCTCAAAATCT-CCTCTCAAATTCCACGCGCCGTCGTACTCTTCCTTCACTGTACGCGCCACCACTGAAGAATCTTCACCTTCCGACACAGACGAACAAACCACCGTCGATTCATCCTCCGATCCCGACAGTTTCGAGAATCGGCTCTCCCAAGTCCGTCTCCGGTACCGTAGTGGAACAGGGAAGAAAGCGGAGGTGCGAAAAACTCGAAAGGGCAAAAAAGGTTCATCTGGATCCGGATCCGGGTCGAGCGTGTTTCTCCCACCAATTCCTCTAAAGGAACCTGTTTCCGAAGGTTTACCCGTTGAATTCGGGTTTAGTCCGTTTTCGGAACGGGTCAATGGACGGATCGCCATGCTTGGATTATCCGCATTGCTGTTGGTGGAGCTTGCAACAGGTAAGAGTGTAATTAATTATCATACGCCGGCGATTGTGTTCATTCAGGTTTATTTTGTCGCCGCCGTAGCGGCGGTGTATTTGAAGAATGAGAAAGAGAAAGTTAGCGTTTGGCCTAAATAGTTGAGCTGCCATTGTTGAATTCTCTGAGATTTTTTTTTGAATTGGATGTCTGT</genome_strand>
        <mrna_strand>TTCTACTCTGCAACTCACAAAATCAAACCCTTTCTTCTCAAAATGTGGGTCTCAAATTCATGGAACCGTCGTACTCTTCCTTCACTGTACGCGCCACCACTGAAGAATCTTCACCTTCCGACACAGACGAACAAACCACCGTCGATTCATCCTCCGATCCCGACAGTTTCGAGAATCGGCTCTCCCAAGTCCGTCTCCGGTACCGTAGTGGAACAGGGAAGAAAGCGGAGGTGCGAAAAACTCGAAAGGGCAAAAAAGGTTCATCTGGATCCGGATCCGGGTCGAGCGTGTTTCTCCCACCAATTCCTCTAAAGGAACCTGTTTCCGAAGGTTTACCCGTTGAATTCGGGTTTAGTCCGTTTTCGGAACGGGTCAATGGACGGATCGCCATGCTTGGATTATCCGCATTGCTGTTGGTGGAGCTTGCAACAGGTAAGAGTGTAATTAATTATCATACGCCGGCGATTGTGTTCATTCAGGTTTATTTTGTCGCCGCCGTAGCGGCGGTGTATTTGAAGAATGAGAAAGAGAAAGTTAGCGTTTGGCCTAAATAGTTGAGCTGCCATTGTTGAATTCTCTGAGATTTTTTTTTGAATTGGATGTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291417" ref_strand="+" ref_description="SGN-E291417 [cLET-2-P4]">
      <seq>aaaatcaaaccctttcttctcaaaatctcctctcaaattccacgcgccgacgtactcttccttcactgtacgcgccaccactgaagaatctttaccttccgacacagacgaacaaaccaccgtcgattcatcctccgatcccgacagtttcgagaatcggctctcccaagtccgtctccggtaccgtagtggaacagggaagaaagcggaggtgcgaaaaactcgaaagggcaaaaaaggttcatctggatccggatccgggtcgagcgtgtttctcccaccaattcctctaaaggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="+" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="21136" stop="22034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21436" g_stop="21734" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="+" ref_id="SGN-E291417" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21436" e_stop="21734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAACCCTTTCTTCTCAAAATCTCCTCTCAAATTCCACGCGCCGTCGTACTCTTCCTTCACTGTACGCGCCACCACTGAAGAATCTTCACCTTCCGACACAGACGAACAAACCACCGTCGATTCATCCTCCGATCCCGACAGTTTCGAGAATCGGCTCTCCCAAGTCCGTCTCCGGTACCGTAGTGGAACAGGGAAGAAAGCGGAGGTGCGAAAAACTCGAAAGGGCAAAAAAGGTTCATCTGGATCCGGATCCGGGTCGAGCGTGTTTCTCCCACCAATTCCTCTAAAGGAAC</genome_strand>
        <mrna_strand>AAAATCAAACCCTTTCTTCTCAAAATCTCCTCTCAAATTCCACGCGCCGACGTACTCTTCCTTCACTGTACGCGCCACCACTGAAGAATCTTTACCTTCCGACACAGACGAACAAACCACCGTCGATTCATCCTCCGATCCCGACAGTTTCGAGAATCGGCTCTCCCAAGTCCGTCTCCGGTACCGTAGTGGAACAGGGAAGAAAGCGGAGGTGCGAAAAACTCGAAAGGGCAAAAAAGGTTCATCTGGATCCGGATCCGGGTCGAGCGTGTTTCTCCCACCAATTCCTCTAAAGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348192" ref_strand="+" ref_description="SGN-E348192 [cTOF-27-N2]">
      <seq>gtctccggtaccgtagtggaacagggaagatatcggaggtgcgataaactcgaaagggcaaaaaaggttcatctggatccggatccgggtcgagcgtgtttctcccaccaattcctctaaaggaacctgtttccgaaggtttacccgttgaattcgggtttagtccgttttcggaacgggtcaatggacggatcgccatgcttggattatccgcattgctgttggtggagcttgcaacaggtaagaagtgtaattaattatcatacgccggcgattgtgttcattcaggtttattttgtcgccgccgtagcggcggtgtatttgaagaatgagaaagagaaagttagcgtttggcctaaatagttgagctgccattgttgaattctctgagatttttttttgaattggatgtctgtatgataaacttctcacagcttgttttattttagtatatatcttattgtctcgaagcaacagtaaaatttactccttttatcatttataaattacgagttttgagttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="+" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="21309" stop="22434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21609" g_stop="22141" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="+" ref_id="SGN-E348192" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21609" e_stop="22141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCCGGTACCGTAGTGGAACAGGGAAGAAAGCGGAGGTGCGAAAAACTCGAAAGGGCAAAAAAGGTTCATCTGGATCCGGATCCGGGTCGAGCGTGTTTCTCCCACCAATTCCTCTAAAGGAACCTGTTTCCGAAGGTTTACCCGTTGAATTCGGGTTTAGTCCGTTTTCGGAACGGGTCAATGGACGGATCGCCATGCTTGGATTATCCGCATTGCTGTTGGTGGAGCTTGCAACAGGTAAG-AGTGTAATTAATTATCATACGCCGGCGATTGTGTTCATTCAGGTTTATTTTGTCGCCGCCGTAGCGGCGGTGTATTTGAAGAATGAGAAAGAGAAAGTTAGCGTTTGGCCTAAATAGTTGAGCTGCCATTGTTGAATTCTCTGAGATTTTTTTTTGAATTGGATGTCTGTATGATAAACTTCTCACAGCTTGTTTTATTTTAGTATATATCTTATTGTCTCGAAGCAACAGTAAAATTTACTCCTTTTATCATTTATAAATTACGAG-TTTGAGTTGTAAAATTTAATA</genome_strand>
        <mrna_strand>GTCTCCGGTACCGTAGTGGAACAGGGAAGATATCGGAGGTGCGATAAACTCGAAAGGGCAAAAAAGGTTCATCTGGATCCGGATCCGGGTCGAGCGTGTTTCTCCCACCAATTCCTCTAAAGGAACCTGTTTCCGAAGGTTTACCCGTTGAATTCGGGTTTAGTCCGTTTTCGGAACGGGTCAATGGACGGATCGCCATGCTTGGATTATCCGCATTGCTGTTGGTGGAGCTTGCAACAGGTAAGAAGTGTAATTAATTATCATACGCCGGCGATTGTGTTCATTCAGGTTTATTTTGTCGCCGCCGTAGCGGCGGTGTATTTGAAGAATGAGAAAGAGAAAGTTAGCGTTTGGCCTAAATAGTTGAGCTGCCATTGTTGAATTCTCTGAGATTTTTTTTTGAATTGGATGTCTGTATGATAAACTTCTCACAGCTTGTTTTATTTTAGTATATATCTTATTGTCTCGAAGCAACAGTAAAATTTACTCCTTTTATCATTTATAAATTACGAGTTTTGAGTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264472" ref_strand="+" ref_description="SGN-E264472 [cLEG-67-L16]">
      <seq>tcgccgccgtagcggttgtgtatttgaagaatgagaaatgaaacctacgtttggcctaaatagttgagctgccattgttgaattctctgagatttttttttgaattggatgtctgtatgataaacttctcacagcttgttttattttagtatatatcttattgtctcgaagcaacagtaaaatttactccttttatcatttataaattacgagtttgagttgtaaaatttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="+" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="21606" stop="22441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21906" g_stop="22142" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="+" ref_id="SGN-E264472" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21906" e_stop="22142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGCCGTAGCGGCGGTGTATTTGAAGAATGAGAAAGAGAAAGTTAGCGTTTGGCCTAAATAGTTGAGCTGCCATTGTTGAATTCTCTGAGATTTTTTTTTGAATTGGATGTCTGTATGATAAACTTCTCACAGCTTGTTTTATTTTAGTATATATCTTATTGTCTCGAAGCAACAGTAAAATTTACTCCTTTTATCATTTATAAATTACGAGTTTGAGTTGTAAAATTTAATAC</genome_strand>
        <mrna_strand>TCGCCGCCGTAGCGGTTGTGTATTTGAAGAATGAGAAA-TGAAACCTA-CGTTTGGCCTAAATAGTTGAGCTGCCATTGTTGAATTCTCTGAGATTTTTTTTTGAATTGGATGTCTGTATGATAAACTTCTCACAGCTTGTTTTATTTTAGTATATATCTTATTGTCTCGAAGCAACAGTAAAATTTACTCCTTTTATCATTTATAAATTACGAGTTTGAGTTGTAAAATTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216285" ref_strand="+" ref_description="SGN-E216285 [cLEL-13-N4](-)">
      <seq>ttggggagaatgcactgatgcatgtctttatttcagtaaaaaaagaaggcttgttgctagtaggccgtccaaggaacgtgcttttaccattgctttcttttggaggagaaaactactagtttaatatgctctactatgctggcttgaatgctatttttactagttttaagttgctaatatgcatgctggctttgtgtaaagcttctgggttcagtggttctaaccagcttgtgttggccagttagagaaacaggccagtgatgggaacttatccaaggttgaattatgcaggttaagtatgatatttaacaataaccccatctgtgacgcctttctcntataaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="-" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="24750" stop="23804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24450" g_stop="24117" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="340" polyA_stop="357"/>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="-" ref_id="SGN-E216285" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24450" e_stop="24117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGGAGAATGCACTGATGCATGTCTTTATTTCAGTAAAAAAAGAAGGCTTGTTGCTAGTAGGCCGTCCAAGGAACGTGCTTTTACCATTGCTTTCTTTTGGAGGAGAAAACTACTAGTTTAATATGCTCTACTATGCTGGCTTGAATGCTATTTTTACTAGTTTTAAGTTGCTAATATGCATGCTGGCTTTGTGTAAAGCTTCTGGGTTCAGTGGTTCTAACCAGCTTGTGTTGGCCAGTTAGAGAAACAGGCCAGTGATGGGAACTTATCCAAGGTTAAATTATGCAGGTTAAGTATGATATTTAACAATAACACCATCTGTGACACCTTT</genome_strand>
        <mrna_strand>TTGGGGAGAATGCACTGATGCATGTCTTTATTTCAGTAAAAAAAGAAGGCTTGTTGCTAGTAGGCCGTCCAAGGAACGTGCTTTTACCATTGCTTTCTTTTGGAGGAGAAAACTACTAGTTTAATATGCTCTACTATGCTGGCTTGAATGCTATTTTTACTAGTTTTAAGTTGCTAATATGCATGCTGGCTTTGTGTAAAGCTTCTGGGTTCAGTGGTTCTAACCAGCTTGTGTTGGCCAGTTAGAGAAACAGGCCAGTGATGGGAACTTATCCAAGGTTGAATTATGCAGGTTAAGTATGATATTTAACAATAACCCCATCTGTGACGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342670" ref_strand="+" ref_description="SGN-E342670 [cTOF-7-P7]">
      <seq>tgggcatgattttgatagctatggaggtgtagctgattatcgctttagacctaaacgtagacctactgtcggggaatctgaaattgaacgtaacgatggaccggatggtcattttgttcggggcaatacaaagtttaccacaatgcagagaagaggtttccctcgaatgcggtctaaatctcctgttagatctcgtacacggtcccctggcccttggtcatctcctcggaggagattgaatgaaggatataataatggtcccccagattcatctcatcacaggtcaccagctatgtacagggaagataggatgaggtcttctccacggacttctttcactgaagagatagttctccgaagacgtgattccccctcatatactactcggcgtctgaatgatttacgggacgtggatgctgtacaggagcacagtcatccgaggtctctttctagcagaagaagtccacctgatcgggtatttactagaagcaataggagacttgaggttntagatcgtcgggagagggctgatggggatgagtactttgatgggccgatacacactgctagatttcatgatcttcgtggtggtggaagtaccgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="-" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="25954" stop="24749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25654" g_stop="25049" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="-" ref_id="SGN-E342670" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25654" e_stop="25049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGCATGATTTTGATAGCTATGGAGGTGTAGCTGATTATCGCTTTAGACCTAAACGTAGACCTACTGTCGGGGAATCTGAAATTGAACGTAACGATGGACCGGATGGTCATTTTGTTCGGGGCAATACAAAGTTTACCACAATGCAGAGAAGAGGTTTCCCTCGAATGCGGTCTAAATCTCCTGTTAGATCTCGTACACGGTCCCCTGGCCCTTGGTCATCTCCTCGGAGGAGATTGAATGAAGGATATAATAATGGTCCCCCAGATTCATCTCATCACAGGTCACCAGCTATGTACAGGGAAGATAGGATGAGGTCTTCTCCACGGACTTCTTTCACTGAAGAGATAGTTCTCCGAAGACGTGATTCCCCCTCATATACTACTCGGCGTCTGAATGATTTACGGGACGTGGATGCTGTACAGGAGCACAGTCATCCGAGGTCTCTTTCTAGCAGAAGAAGTCCACCTGATCGGGTATTTACTAGAAGCAATAGGAGACTTGAGGTTTTAGATCGTCGGGAGAGGGCTGATGGGGATGAGTACTTTGATGGGCCGATACACACTGCTAGATTTCATGATCTTCGTGGTGGTGGAAGTACCGATGA</genome_strand>
        <mrna_strand>TGGGCATGATTTTGATAGCTATGGAGGTGTAGCTGATTATCGCTTTAGACCTAAACGTAGACCTACTGTCGGGGAATCTGAAATTGAACGTAACGATGGACCGGATGGTCATTTTGTTCGGGGCAATACAAAGTTTACCACAATGCAGAGAAGAGGTTTCCCTCGAATGCGGTCTAAATCTCCTGTTAGATCTCGTACACGGTCCCCTGGCCCTTGGTCATCTCCTCGGAGGAGATTGAATGAAGGATATAATAATGGTCCCCCAGATTCATCTCATCACAGGTCACCAGCTATGTACAGGGAAGATAGGATGAGGTCTTCTCCACGGACTTCTTTCACTGAAGAGATAGTTCTCCGAAGACGTGATTCCCCCTCATATACTACTCGGCGTCTGAATGATTTACGGGACGTGGATGCTGTACAGGAGCACAGTCATCCGAGGTCTCTTTCTAGCAGAAGAAGTCCACCTGATCGGGTATTTACTAGAAGCAATAGGAGACTTGAGGTTNTAGATCGTCGGGAGAGGGCTGATGGGGATGAGTACTTTGATGGGCCGATACACACTGCTAGATTTCATGATCTTCGTGGTGGTGGAAGTACCGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702038" ref_strand="+" ref_description="SGN-E702038 [FA17CE08]">
      <seq>atcgattgaagaagacccaattgctgaggggatggaatcagagaaaaataatgtatcttccagcaaaaatgctcgttcttctggcattggggaatctcattgcttcaataatgatgacaaaggttacagtatacctgttcatacggataatgatgaccttgtgaaaggctgtgatgaaaaaactgtccaaattgatcataaagatggtaagttgcagagtccattattaggtaaggaggaaataacaggagatgatgaggagaggccaattggcgctgttcaccaaggatcagttgatcaatcaggaatagcagatgatcaggagagatgtgaaaaggacgtcttttgtgacgtaacacctgttggaagcagtggggctggaagaaatgctggtgaggctaataacgagtatattggaagatctgatatgtcatcgacagctgtgtcatctttgcaaaatgccgaaacacctgttaatgctgcctctagtaaagatatgacaaattttggaagcaagagccgtataatcagcttacctcgtgcatccaatgtgacaccacctagtaatttcagacctgttacaggtagatcactgccttcaagaagtggaagagaaaggtattcagatatggaggaggagaaatttcatctacgaaggatataataatggtcccccagattcatctcatcacaggtcaccagctatgtacagggaagataggatgaggtcttctccacggacttctttcactgaagagatagttctccgaagacgtgattccccctcatatactactcggcgtctgaatgatttacgggacgtggatgctgtacaggagcacagtcatccgaggtctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="-" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="26854" stop="24907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26554" g_stop="25892" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25891" i_stop="25405" i_length="487">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25404" g_stop="25207" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="860" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="-" ref_id="SGN-E702038" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26554" e_stop="25892"/>
          <exon e_start="25404" e_stop="25207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTGAAGAAGACCCAATTGCTGAGGGGATGGAATCAGAGAAAAATAATGTATCTTCCAGCAAAAATGCTCGTTCTTCTGGCATTGGGGAATCTCATTGCTTCAATAATGATGACAAAGGTTACAGTATACCTGTTCATACGGATAATGATGACCTTGTGAAAGGCTGTGATGAAAAAACTGTCCAAATTGATCATAAAGATGGTAAGTTGCAGAGTCCATTATTAGGTAAGGAGGAAACAACAGGAGATGATGAGGAGAGGCCAATTGGCGCTGTTCACCAAGGATCAGTTGATCAATCAGGAATAGCAGATGATCAGGAGAGATGTGAAAAGGACGTCTTTTGTGACGTAACACCTGTTGGAAGCAGTGGGGCTGGAAGAAATGCTGGTGAGGCTAATAACGAGTATATTGGAAGATCTGATATGTCATCGACAGCTGTGTCATCTTTGCAAAATGCCGAAACACCTGTTAATGCTGCCTCTAGTAAAGATATCACAAATTTTGGAAGCAAGAGCCGTATAATCAGCTTACCTCGTGCATCCAATGTGACACCACCTAGTAATTTCAGACCTGTTACAGGTAGATCACTGCCTTCAAGAAGTGGAAGAGAAAGGTATTCAGATATGGAGGAGGAGAAATTTCATCTACGAAGGAATAGGTGATTTTTCTTTTCTTTTTATTGCTGTTTGATTCATAATTTTTTTTATATTTGAATGCTGCTCAACTATGACTTTTCTTTCTGTGTTTTTTTCAGGGAAGAAACTTGTGCTGATGGTCCTAAATTTGTGCGAGATAGGATTCAGGACCGGTCATTTGGCAGCTCAAGGGGGAACTTCATGCGGGGAAGAGGGAGGGGCTCAGCCCGATTTGACAGTTTACGTAGAGAATGGGATTCTGGGCATGATTTTGATAGCTATGGAGGTGTAGCTGATTATCGCTTTAGACCTAAACGTAGACCTACTGTCGGGGAATCTGAAATTGAACGTAACGATGGACCGGATGGTCATTTTGTTCGGGGCAATACAAAGTTTACCACAATGCAGAGAAGAGGTTTCCCTCGAATGCGGTCTAAATCTCCTGTTAGATCTCGTACACGGTCCCCTGGCCCTTGGTCATCTCCTCGGAGGAGATTGAATGAAGGATATAATAATGGTCCCCCAGATTCATCTCATCACAGGTCACCAGCTATGTACAGGGAAGATAGGATGAGGTCTTCTCCACGGACTTCTTTCACTGAAGAGATAGTTCTCCGAAGACGTGATTCCCCCTCATATACTACTCGGCGTCTGAATGATTTACGGGACGTGGATGCTGTACAGGAGCACAGTCATCCGAGGTCTCTT</genome_strand>
        <mrna_strand>ATCGATTGAAGAAGACCCAATTGCTGAGGGGATGGAATCAGAGAAAAATAATGTATCTTCCAGCAAAAATGCTCGTTCTTCTGGCATTGGGGAATCTCATTGCTTCAATAATGATGACAAAGGTTACAGTATACCTGTTCATACGGATAATGATGACCTTGTGAAAGGCTGTGATGAAAAAACTGTCCAAATTGATCATAAAGATGGTAAGTTGCAGAGTCCATTATTAGGTAAGGAGGAAATAACAGGAGATGATGAGGAGAGGCCAATTGGCGCTGTTCACCAAGGATCAGTTGATCAATCAGGAATAGCAGATGATCAGGAGAGATGTGAAAAGGACGTCTTTTGTGACGTAACACCTGTTGGAAGCAGTGGGGCTGGAAGAAATGCTGGTGAGGCTAATAACGAGTATATTGGAAGATCTGATATGTCATCGACAGCTGTGTCATCTTTGCAAAATGCCGAAACACCTGTTAATGCTGCCTCTAGTAAAGATATGACAAATTTTGGAAGCAAGAGCCGTATAATCAGCTTACCTCGTGCATCCAATGTGACACCACCTAGTAATTTCAGACCTGTTACAGGTAGATCACTGCCTTCAAGAAGTGGAAGAGAAAGGTATTCAGATATGGAGGAGGAGAAATTTCATCTACGAAGG-ATAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAATGGTCCCCCAGATTCATCTCATCACAGGTCACCAGCTATGTACAGGGAAGATAGGATGAGGTCTTCTCCACGGACTTCTTTCACTGAAGAGATAGTTCTCCGAAGACGTGATTCCCCCTCATATACTACTCGGCGTCTGAATGATTTACGGGACGTGGATGCTGTACAGGAGCACAGTCATCCGAGGTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248592" ref_strand="+" ref_description="SGN-E248592 [cLEF-58-E21]">
      <seq>gagccacaatgcagagaagaagtttccctcgaatgcggtctaaatctcctgttagatctcgtacaccggtcccctggcccttggtcatctcctcggaggagattgaatgaaggatataataatggtcccccagattcatctcatcacaggtcaccagctatgtacagggaagataggatgaggtcttctccacggacttctttcactgaagagatagttctccgaagacgtgattccccctcatatactactcggcgtctgaatgattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="-" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="25817" stop="24952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25520" g_stop="25252" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="-" ref_id="SGN-E248592" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25520" e_stop="25252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCACAATGCAGAGAAGAGGTTTCCCTCGAATGCGGTCTAAATCTCCTGTTAGATCTCGTACA-CGGTCCCCTGGCCCTTGGTCATCTCCTCGGAGGAGATTGAATGAAGGATATAATAATGGTCCCCCAGATTCATCTCATCACAGGTCACCAGCTATGTACAGGGAAGATAGGATGAGGTCTTCTCCACGGACTTCTTTCACTGAAGAGATAGTTCTCCGAAGACGTGATTCCCCCTCATATACTACTCGGCGTCTGAATGATTTA</genome_strand>
        <mrna_strand>GAGCCACAATGCAGAGAAGAAGTTTCCCTCGAATGCGGTCTAAATCTCCTGTTAGATCTCGTACACCGGTCCCCTGGCCCTTGGTCATCTCCTCGGAGGAGATTGAATGAAGGATATAATAATGGTCCCCCAGATTCATCTCATCACAGGTCACCAGCTATGTACAGGGAAGATAGGATGAGGTCTTCTCCACGGACTTCTTTCACTGAAGAGATAGTTCTCCGAAGACGTGATTCCCCCTCATATACTACTCGGCGTCTGAATGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359109" ref_strand="+" ref_description="SGN-E359109 [cLHT-11-F22]">
      <seq>aaaaaattagttgaacaaccaaaagctttgtggcagtactctctggagaaacaaattgaaggtaatttgtaaaaatctacatattttttcttatagtgaattttgtttagattgaacttgcttgaattgatttgtatgaatatcttctcttgtctaggtttaagagttacgaatgataagaatcttttctccttgtgttttattttttcattcgactggcgcaactaattttttgggcttgtttgttaagttttgtaatgtccattattcttgaagctggttttgagatttccgacgagaactctatgacttcaccttttccggttaacagggtaatatactttcaatcgtgttcgtaggtctttcatttttagtaaagacatgctttcaaattttgtgcactctaaaaaaaattaagttatgcatatgatgtgttgtcatgttgatgttgtattgtagaaacgtaaaaaaatgaataaatcacgtggttcagcggctgataaatcgactaatgaatgatagtatatatgaaatatcagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="-" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="37469" stop="36357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37185" g_stop="36661" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="-" ref_id="SGN-E359109" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37185" e_stop="36661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTAGTTGAACAACTATAGTAAAAGCTCTGTGGCAGTCCTCTCTGGAAAAACAAATTGAAGGCAATTTGTAAAAATCTACATATTTTTTCTTATAGTGAATTTTGTTTAGATTGAACTTGCTTGAATTAATTTGTATGAATATATTCTCTTGTCTAGCTAGGTTTAAGAGTTATGAATAATAAGAATCTTTTCTCCTTGTGTTTTATTTTTTCATTCGACTGGCGCAACTAATTTTTCGGGCTTGTTTGTTAAGTTTTGTAATGTACATTATTCCTGAAGCTGGTTTTGAGATTTCCGAAGAGAACTCTATGACTTGACCTTTTCCCGTTAATAGGGTAATATACTTTCAATCGTGTTCGTACGTCTTTCATTTTTAGTAAAGACATGCTTTCAGATTTTGTGCACTCTAAAAAAAATTAAGTTATGCATATGATGTGTTGTCATGTTGATGTTGTATTGTAGAAACGTAAAAAAATGAATAAATCACGTGGTTCAGCGGCTGATAAATGGACTGATGAA</genome_strand>
        <mrna_strand>AAAAAATTAGTTGAACAAC----C-AAAAGCTTTGTGGCAGTACTCTCTGGAGAAACAAATTGAAGGTAATTTGTAAAAATCTACATATTTTTTCTTATAGTGAATTTTGTTTAGATTGAACTTGCTTGAATTGATTTGTATGAATATCTTCTCTTG--T--CTAGGTTTAAGAGTTACGAATGATAAGAATCTTTTCTCCTTGTGTTTTATTTTTTCATTCGACTGGCGCAACTAATTTTTTGGGCTTGTTTGTTAAGTTTTGTAATGTCCATTATTCTTGAAGCTGGTTTTGAGATTTCCGACGAGAACTCTATGACTTCACCTTTTCCGGTTAACAGGGTAATATACTTTCAATCGTGTTCGTAGGTCTTTCATTTTTAGTAAAGACATGCTTTCAAATTTTGTGCACTCTAAAAAAAATTAAGTTATGCATATGATGTGTTGTCATGTTGATGTTGTATTGTAGAAACGTAAAAAAATGAATAAATCACGTGGTTCAGCGGCTGATAAATCGACTAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359151" ref_strand="+" ref_description="SGN-E359151 [cLHT-11-E17]">
      <seq>gaggcaaaaaattagttgaaccaacccaaaagctttgtggcagtacctctctggagaaaccaaattgaaggtaatttgtaaaaatctacatattttttcttatagtgaattttgtttagattgaacttgcttgaattgatttgtatgaatatcttctcttgtctaggtttaagagttaccgaatgataagaatcttttctccttgtgttttattttttcattcgactggcgcaactaattttttgggcttgtttgttaagttttgtaatgtccattattcttgaagctggttttgagatttccgacgagaactctatgacttcaccttttccggttaacagggtaatatactttcaatcgtgttcgtaggtctttcatttttagtaaagacatgctttcaaattttgtgcactctaaaaaaaattaagttatgcatatgatgtgttgtcatgttgatgttgtattgtagaaacgtaaaaaaatgaataaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="-" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="37460" stop="36394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37161" g_stop="36694" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="493" r_length="467" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="-" ref_id="SGN-E359151" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37161" e_stop="36694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGCTCTGTGGCAGT-CCTCTCTGGA-AAAACAAATTGAAGGCAATTTGTAAAAATCTACATATTTTTTCTTATAGTGAATTTTGTTTAGATTGAACTTGCTTGAATTAATTTGTATGAATATATTCTCTTGTCTAGCTAGGTTTAAGAGTTA-TGAATAATAAGAATCTTTTCTCCTTGTGTTTTATTTTTTCATTCGACTGGCGCAACTAATTTTTCGGGCTTGTTTGTTAAGTTTTGTAATGTACATTATTCCTGAAGCTGGTTTTGAGATTTCCGAAGAGAACTCTATGACTTGACCTTTTCCCGTTAATAGGGTAATATACTTTCAATCGTGTTCGTACGTCTTTCATTTTTAGTAAAGACATGCTTTCAGATTTTGTGCACTCTAAAAAAAATTAAGTTATGCATATGATGTGTTGTCATGTTGATGTTGTATTGTAGAAACGTAAAAAAATGAATAAATCA</genome_strand>
        <mrna_strand>CAAAAGCTTTGTGGCAGTACCTCTCTGGAGAAACCAAATTGAAGGTAATTTGTAAAAATCTACATATTTTTTCTTATAGTGAATTTTGTTTAGATTGAACTTGCTTGAATTGATTTGTATGAATATCTTCTCTTG--T--CTAGGTTTAAGAGTTACCGAATGATAAGAATCTTTTCTCCTTGTGTTTTATTTTTTCATTCGACTGGCGCAACTAATTTTTTGGGCTTGTTTGTTAAGTTTTGTAATGTCCATTATTCTTGAAGCTGGTTTTGAGATTTCCGACGAGAACTCTATGACTTCACCTTTTCCGGTTAACAGGGTAATATACTTTCAATCGTGTTCGTAGGTCTTTCATTTTTAGTAAAGACATGCTTTCAAATTTTGTGCACTCTAAAAAAAATTAAGTTATGCATATGATGTGTTGTCATGTTGATGTTGTATTGTAGAAACGTAAAAAAATGAATAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367696" ref_strand="+" ref_description="SGN-E367696 [cLPT-14-L12]">
      <seq>aacaaattgaaggtaatttgtaaaaatctacatattttttcttatagtgaattttgtttagattgaacttgcttgaattgatttgtatgaatatcttctcttgtctaggtttaagagttacgaatgataagaatcttttctccttgtgttttattttttcattcgactggggcaactaatttttcgggcttgtttgttaagttttgtaatgtccattattcctgaagctggttttgagattttcgacgagaactctatgacttcaccttttccggttaacagggtaatatactttcaatcgtgttcgtaggtctttcatttttagtaaagacatgctttcaaattttgtgcactctaaaaaaaattaagttatgcatatgatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="-" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="37431" stop="36443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37131" g_stop="36743" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="-" ref_id="SGN-E367696" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37131" e_stop="36743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAATTGAAGGCAATTTGTAAAAATCTACATATTTTTTCTTATAGTGAATTTTGTTTAGATTGAACTTGCTTGAATTAATTTGTATGAATATATTCTCTTGTCTAGCTAGGTTTAAGAGTTATGAATAATAAGAATCTTTTCTCCTTGTGTTTTATTTTTTCATTCGACTGGCGCAACTAATTTTTCGGGCTTGTTTGTTAAGTTTTGTAATGTACATTATTCCTGAAGCTGGTTTTGAGATTTCCGAAGAGAACTCTATGACTTGACCTTTTCCCGTTAATAGGGTAATATACTTTCAATCGTGTTCGTACGTCTTTCATTTTTAGTAAAGACATGCTTTCAGATTTTGTGCACTCTAAAAAAAATTAAGTTATGCATATGATGTG</genome_strand>
        <mrna_strand>AACAAATTGAAGGTAATTTGTAAAAATCTACATATTTTTTCTTATAGTGAATTTTGTTTAGATTGAACTTGCTTGAATTGATTTGTATGAATATCTTCTCTTG--T--CTAGGTTTAAGAGTTACGAATGATAAGAATCTTTTCTCCTTGTGTTTTATTTTTTCATTCGACTGGGGCAACTAATTTTTCGGGCTTGTTTGTTAAGTTTTGTAATGTCCATTATTCCTGAAGCTGGTTTTGAGATTTTCGACGAGAACTCTATGACTTCACCTTTTCCGGTTAACAGGGTAATATACTTTCAATCGTGTTCGTAGGTCTTTCATTTTTAGTAAAGACATGCTTTCAAATTTTGTGCACTCTAAAAAAAATTAAGTTATGCATATGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721653" ref_strand="+" ref_description="SGN-E721653 [FC14DB03]">
      <seq>aatcggccgaattaagaacccaagcaaaccaataataacctaataaaagagtattcttcttaaacaagttctcatttctatcttcctcttttttagttgaatcttccgatcttagttgacgatcttgggctagcagaatgcttctcgaattatacttttttctgttattctctacatggcatgagagccataaccatacgttggcttttgggtattatttcaatatcggattagaggtagattcaactggtttgactatatgaattttagcggccgtgttaatgaacctgggatggagttgttgaaggcttcttgaattatacttttcttctgctattctctacatatcattcgagaaatgttgattctagaatcatgccagtttcagggaacgaagagcctggagttgttgccacgcagtctagtaacttgtcatctcttcttccttataagaagaagttgtatcttcgtgcatctatcactcatgaagaaggaaatatggcaagaggcatggaggacccaagcaaaggagaaatgtcagagcaagaaggtggtaattgtagacggaggcatgaagaataaattgatggctctgaagattgaagaatagaagattttgagttgatagctcactgaacctgtaatattagcaattgccatgggaaacttgttctgcaaatttctgagtccatttatacttggatgaatgataattttcaaagagacagaacgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="-" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="72114" stop="70694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71806" g_stop="71427" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="399" r_length="380" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71426" i_stop="71329" i_length="98">
            <donor d_prob="0.782" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71328" g_stop="70994" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="734" r_length="335" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="-" ref_id="SGN-E721653" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71806" e_stop="71427"/>
          <exon e_start="71328" e_stop="70994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCAAACCAAGAATAACCTAATAAAAGAGTATTCTTCTTAAACAAGTTCTCATTTCTATCTTCCTCTTTTTTAGTTGAATCTTCCGATCTTAGTTGACGATCTTGGGCTAGCAGAATGCTTCTCGAATTATACTTTTTTCTGTTATTCTCTACATGGCATGAGAGCCATAACCATACGTTGGCTTTTGGGTATTATTTCAATATCGGATTAGAGGTAGATTCAACTGGTTTGACTATATGAATTTTAGCGGCCGTGTTAATGAACCTGGGATGGAGTTGTTGAAGGCTTCTTGAATTATACTTTTCTTCTGCTATTCTCTACATATCATTCGAGAAATGTTGATTCTAGAATCATGCCAGTTTCAGGGAACGAAGAGGTCTCAATCTGATCTCTTATTTGCTGTTGAAATTGGTCGTACTGTGTAATACTTGCTTTGTAATTTAATTTTACTCTATTTTGATCATGTATTTGCAGCCTGGAGTTGTTGCCACGCAGTCTAGTAACTTGTCATCTCTTCTTCCTTATAAGAAGAAGTTGTATCTTCGTGCATCTATCACTCATGAAGAAGGAAATATGGCAAGAGGCATGGAGGACCCAAGCAAAGGAGAAATGTCAGAGCAAGAAGGTGGTAATTGTAGACGGAGGCATGAAGAATAAATTGATGGCTCTGAAGATTGAAGAATAGAAGATTTTGAGTTGATAGCTCACTGAACCTGTAATATTAGCAATTGCCATGGGAAACTTGTTCTGCAGATTTCTGAGTCCATTTATACTTGGATGAATGATAATTTTCAAAGAGACAGAACGCG</genome_strand>
        <mrna_strand>CCAAGCAAACCAATAATAACCTAATAAAAGAGTATTCTTCTTAAACAAGTTCTCATTTCTATCTTCCTCTTTTTTAGTTGAATCTTCCGATCTTAGTTGACGATCTTGGGCTAGCAGAATGCTTCTCGAATTATACTTTTTTCTGTTATTCTCTACATGGCATGAGAGCCATAACCATACGTTGGCTTTTGGGTATTATTTCAATATCGGATTAGAGGTAGATTCAACTGGTTTGACTATATGAATTTTAGCGGCCGTGTTAATGAACCTGGGATGGAGTTGTTGAAGGCTTCTTGAATTATACTTTTCTTCTGCTATTCTCTACATATCATTCGAGAAATGTTGATTCTAGAATCATGCCAGTTTCAGGGAACGAAGAG..................................................................................................CCTGGAGTTGTTGCCACGCAGTCTAGTAACTTGTCATCTCTTCTTCCTTATAAGAAGAAGTTGTATCTTCGTGCATCTATCACTCATGAAGAAGGAAATATGGCAAGAGGCATGGAGGACCCAAGCAAAGGAGAAATGTCAGAGCAAGAAGGTGGTAATTGTAGACGGAGGCATGAAGAATAAATTGATGGCTCTGAAGATTGAAGAATAGAAGATTTTGAGTTGATAGCTCACTGAACCTGTAATATTAGCAATTGCCATGGGAAACTTGTTCTGCAAATTTCTGAGTCCATTTATACTTGGATGAATGATAATTTTCAAAGAGACAGAACGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329861" ref_strand="+" ref_description="SGN-E329861 [cTOD-3-B16]">
      <seq>ctttttgctgttcaagaacaatggagaaggttctcatttgcttcctatacatatatatgtatctgtaggtcaggcaaatgctaatactgctgctgaaaatgctaaattttgacctcaaataactaaatgtatccagtgataaaggggaggcatctttttccgtgagtattaatatggaagatcacacggtatacaaaaaaccacaaggcatacataatttagttgcaagtggtgaggggtcagcaaatgatggggaaaagataagtatatcagctggtacagaagaagaatgttatgcttctgcttatgaatctgatggttatcagaattttgcaagacatgttgacactgagagtgtgggttttttccagagaggatggcatatacgaagacggtaagatctgagaactaaagatgtagtcaattgcagaagacccaatggctgcggagatggattcaggaaaaaataatgaatcttcaagtaaaaatgttcattcttctctttggaaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0050I18-v2waS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0050I18.1" temp_strand="-" temp_description="C04HBa0050I18.1  CU019620.9 htgs_phase:3 submitted_to_sgn_as:C04HBa0050I18 sequenced_by:sanger upload_account_name:uk">
        <position start="110197" stop="100490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109897" g_stop="109830" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109829" i_stop="101235" i_length="8595">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101234" g_stop="100790" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="513" r_length="445" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0050I18.1" gen_strand="-" ref_id="SGN-E329861" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0050I18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109897" e_stop="109830"/>
          <exon e_start="101234" e_stop="100790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTGCTGTTCAAGAACAATGGAGAAGGTTCTCATTTGCTTCCTATACATATATATGTATCTGTAGGTATGTAATTGATCCTTTTTTTGTTATTTTCAGGTAAAGGTTTGTTTTTTATTGTTGAATTTTTGTGTTTTCGTCTTTTTTTTTTATTTGAAACAGTATTTGATGAGTGATAAAATTGGTTTTGTTGTAATATGTGGAGGTTTTTTCGATATGGGGTTTTATGGAAATTGATTAGTTATTGGACTATTTGATTGTCTTTATATCGTGTCGAAACCAATTAGTTGTTAATAGTAAATTAGTTTGTTTGATTTGTTGTTTTTGGAGGGCTTTTACCCTTTGTATTGTATTGCATTGTTAGATGCAACATTTGTTTTGATTATTTTATGATTTTTTGCTCTCTTCTTTTGAATTGTATTGATATTTTGGCATATCTGGTTGCAGGGTGCTACTAGAGGAGTGTGATTTATTGTTTGAGTTGTGTTTTATTACTTGATTGTAGCTTAAGCTTTAACTGATTCTAGAATTATGCCAGTTTTTGGGAACAAAGAGGTTTTAAATCTGATTTCTTATTTGCAGGTGAAAATAGGTTTAACTGTTGCTTTTTTTTTCTCCTTTACATCATGTTTTTTTTAGCCTGGGGCTCTTGCCTGACAGTCTAGTAACTCTTCTTCTGTTCTTCCTTATAAGAAGAGGTTGTGCTCTATATTCTATCTGCGTGCACCTATCCATCCTGAACCCTATTGTTCTAATGAAAATAAATCCAAGACCAAAGATTCCGGGTACGGACAAAGATCGACCTTGAATTATTGTGATAGTACAGGTAAATCTGATACTCCCAGTAAGTCTGTTCTAGAGGTAAAAAAAGAAAGGCCTTTGGGTGTGAAAGTTGACTCTCAGCCTACCATGCGATCAATTTTCCCGGTATCTACGGAAACGAATCCTTATACTAGTTTCGATCCTTCAAGAAATATTGAAGGTCTTGTGAAACTAGATTTGACCAAAAAATAGCTGGCCAGTAAGCTATAGGTATAACAAAAGTTTCTCTCAAGAAAGAAGTCATTCTCAAACAAGAGGAAAGCCATAGTGAACTTGAACTTCCTGCCCATTCAGGGCAAGTTGAACTGTCATTAGGCCCAAAAAAAACCTCATGTTTCTTCTTTGGATGATCCAGATACTAAGGAGAGTTGTCTGATGCGTGGAACTGTAAATCCTTCAATTCTTTCTCTTTCCTCGAATAAAAGGGAGGACATGTTCAAGGAAGGAAGTTGCAAAGTGGATTGAATTACAATGATGTTGATGATATTGCACACACTGATAGATCTAACTAGGATCTGAATACCCCCATGGATTCATGAGAGAGCTCTGGCGATGTTGTTCTTGTTCATGATAATACAAGTCAAATCGATCTGTTAGGTTAGACATCTAGTTCACTAGACAGAAAGGCACCTATTAGTTCTGCTTCTGTTATTGGTTTTGATGGTGATGGGAAGCAAGTTGTTGGAGCTAGTGAGCAGGAATTTAATTTTCCTATTTCATCAATACATCCTAGGTTACCACATAAGTCTGCAGATGGGCTTCGTCTTAGTCTTGGTAGTACTTTACGAGGGTTTGATTCCTCAGCATTGCAGTCATTATCTAAAGTAGATTCCTCAGCACTGCAGTAATTATCTAAAGTAGACTCCAACAGGGTTAGTCTAAACTCGAGTTTGCTGAAAAATCTAGCATAGGATAGAAACATGAATTCCCCTACTTGTAAAACTGTTAAGTCAGAACCTGTTGTAGAAGCCTAGGTACAAGCTAATGCTAGAATTGCGGTTCATATAGTTGGAACATTCATGGCTAATGTTGTAAAATGTGAGGTTGTGAGGAAGAATCTGCAGTCTATTGAGTTATCAACTAAGGGCCCTACGGAATTACTTGAGCAAGAACCAATGAAATGTGAACCACTCTAGGAAATATCCATGAATCAGATGTTATTGCGCCCCAATCAGTTGGAAGGGTTTTACAGCTTCAGAAGAGTTCTTCTTCTTCTTCTACACCGCCAATGCCTTTGACCCCTCAACAGGGATGCACTTCTAGATTGTCTAACTATTCAGATTTGTCTGTGAGTGGCGGGAACTTGTCTACTCCATCTAGGTACTCTGTTCATACTAATAAAGCTAATAGGAGTAAAAATGCTCTCGATCAGGCAAATGATGATGTTGCTGCTCAAACTGCAAACTTGGACCTCAAAGAACTAAATGTATGCAGGGATAAAGTGGAGGCATCTGTTTCCGTGAGCATGAATATTGAAGATCACACGGTATACAAAAAGACAGAAGACACACATAATTTGGTTGCAAGTGGTAAGGGGTCGGCAAATGATGGTTCTGATTATGAATCTGATGGTCATCAGGCTTTTGCTGGACATGTTGACATTGAGAGTGTGGGGTGTGTCAGAGAGGATGAGGAATATGAAAATGGTGAGATCCGAGAACCAATGATGCAGACAATTGTAGAAGACCCAGTTGCTGAGGGGATGGATTCAAAAAAGAATAAAAATGATAATAAAGACATTAATCTGGGAAGTCCATTATTAGATAAAGAGGAAACAAGCAGAGATGATGAGCAAAGTCCTATTGGTGTTATTTACCAAGGATCACCTGATCAATCAGGACTAGCAGATGTACAAGAGGGATGTGAAAAGGATGTCTTATGTGTCGGACCATCTGCTGGGAGAAGAGGAGCTGTCAGGAATGTTGGTGAGGCTAATAATGAGTATATTGGAAGATCTGATATGTCAGCAAAAGCCCTTTCATCTTTTCAAAATGCAGAAACACCTGTTAATACTACCTGTAGTAAAGATTTGTCAGGCAAGAGTCGGATCATCAATTTACCCCGTGCATCAAATGTGACATCTTCTAGTAATTTCAGACCTGTAACGGGTAGGTCACTGTCTTCAAGAAGTAAAAGAAAGATATTCTTATATGGAGGAGGAGAAATTCCATCTACGAAGGAATCGGTAAAGTTTTTTTTATTGCTTTGTTTGATTTTTAATTTTTTAATAATGCTGCTCAACTCTCGACTGTTTCTTACTGTGCTTTTTCTAGAGATGAAATCTATGATAATGGTTCTAAATTTGTGTGAGATGGGTCTCTAGATCGTTCATTCGGTAGATCAAGGGGGAACTTCATGTATGGAAGAGGGAGAGGCTCATACCGATTTCATAGATCACGTAGAGATGGGGATTCTGGGCGTGATTTTGAAAGCTATAGAGGTGCAGCTGATTATCGCTTTAGGCATAAATGTACAGTTACTGTTGGGGAGTATGAAAATGAACGTAATGCCTATGACAGTAGACTAGATGGTGCTGCCTCTGGTAGTAATAGGAAGAGGAAGCCATTAAATGATGACTTGCTTTCATTTCAACATCTACCTGCACGTCTACTATCCCCCAATGGAAGAGAAGATGCTGCAGCAATGGGCATTAAAATTCTTCGTAGAGCTCCTGGGAAATATCAGCCTAGGCAGATGCACTGGTGAAGATGGCTCTGAGTATGTTGGTCCTCGGCATAGCGAGAAGTTTGACAGAAACTTTCCATCAAATATTAGTGATCCCGTTTACAGTCACTGGCAATCTATGTATGATAGACTTGATGCTCATTTTGTTCAGGGTAATACACGGTTTACTGCGATACAGAGAAGTGATTTCCCTCGAACTCAATCTAAATCTCTTGGTAGATCCCGTACTTGTTCGTCTCCTCATAGGATATTGACGGAAGGATTGAATGGCCATCAAGATTCATCTCAGCACAGGTTACGGGTTATGTATAGGGAAGATAGAATGAGGTTTGGTCCACAAACTTCTTTTACTGATGAAGAAATAGTTCCTCAAAGGCTATACTTCTCGTCGTCTGAATGATATGAGGGATATGGATGCTATATAGAAGCACAAGCATCCCAGGTCTCTCTTTCTAACAGAAGATGTCCACCTGATCAGGTATTTACTAGTACCAATACGAGAGTTGAGATTTTAGATCATCGGGAAAGGGCTGATGGTGATGCGTACTTAGATGGGTCGATACGCACTGGTAGGTTTCCTGAGCTTCACAGTGGTGAAAGTACTAATAAAAGAAGGAAGGTGAGAGGCAAGGAGGACGTAAGCAAATAAGAAATTCTGAAGAGCAAGATGGTGGTAACTTTAGGCAGAGTAAACAACTTTGGCATGAAGACAAATTTGATGTCTCCAAATTGAAGAAAAGAAGCAAAAACATGTATGAATGCATAGTTTCCCATAGATTGAAGGTTTGATGAGCTATTAATCCAATAAGTGCTTTCAATCAGGAGATATTCCGTGTTTTAGTCACGCTCTCTCTTCCACAATTATTATTCATCTAGATAAATTCAGAAGTCTGCCTCCCTTCTATAATATGAAAGCATGCTGCTGTTACCCTTCTCTGTCTGCAAGGAACATTGAGATATCTTCTTTTCTTCAATCTGGAGCCATCAAATTCTTATTCATGCCAAAGTCGTTCATTCGGTCTCAGATTACCATCTTCTTGCTCTTTGACATTTCTCATTTGCCTAAGTCAACCTTGCCTCTCACCATACTTCCTTCTTTCATCACTACTTTCACCACTGTGAAGCTCAGGAAATCTACCTGTGTGTATTGGCTCATCAAAGTACACATCACCATCATCCCTTTTCTAATGATCTAAAATTTCTACTCTCGGCCTATTAGTTCTAGTAAATACCTGATCAGGTGAACTTCCTCTACTAGAAAGAGACCTTGTATGCCCGTGCTCCAGTATAGAATTTACGTCCCTCATATCATTCAGACGATGAGCAGTATAAGATGGAGAGTCACGCCTTTGAGGAGCTATTGCTTCTTCAGTAAAAGAAGTTCGTGAAGACGACCTCATTCTATCTTTTATGTACATAATAGGAGACCTGTGGTAAGATAAACCTTGACGACCATTTAATCCTTCCGTCAATATCCTCGGAGGAGAGGATCAAGTACGGGATCTAACAGGAGATTTCGACCATATTTGAGGGAAACCACTTCTCTGCATCGCAGTAAACTTTGTTTTACCCTGACCGAAATAATGATCAGGTCCATCGTACATAGACTGTTGGTGACTATAAACAGGATTACTAATATCAACTGGAAAGTCTCTATTAAACTTCCCACCATGCCAACTACCAGTATACACAGAGCCATGTTCACCAGCGCATCTGGTTGGGCTAATATTCTTGGGAGCGCTATGAAGCATTTGAATGCCCATCATGGCAACATCTTCTCTTACATTAGGGATAGTCGATGTGCAGGTGGATCCCGAAATGAATGCAAGGCATCATTTAATGGATTCCTCCTCCTATTACTAGCAAAGGCACCACCATCTAGTCTAGCTACTATCATAGTCATTATGTTCATTTGTAGATTCCCAAGCAGTAGCTGTATGATTATGTCTAAAGCAATAATCAGTTATACCTCCATAGTTTTCAAAATACACCCAGAAAACCAATCTCTACGTAATATGTGAAACCGGCCCCAGCCCCTCCTTCTTCCATGTATGAAGTTCCCCCTTAGCTACCAAATGAACGGTCCTGAAACCTATCTCACATAAATTTAGGACCATAACCATAGATTGTTGCGGAAATAGATGCCTCCACTTTATCACTGGATACATTTAGTTCTTTGAGGTCAAAGTTTGAATTTTTAGTAGCAATATCAGAGTATTCAGATGGAGTAGACAAGTCCGCACCACTCAGTTTTTACAACATTAGCCTCAAATGTTCCAGCTGAACGAACCGAAGTTCCAGCATTTGCTTGTACCAACGTTTCCACAACTAGTTCTGACTCAACAATTTTAAAAGTAGGGGAATTCATGTTTCTTTCCAATGTCCTATTTTTCAGCAAACTTGAATTTGGACCAAAACGATTGGGTGTCTACTTTAGCCAATGAGTTAAAACCTTGAAAAGTACTACCAAGACTAAGACAAAGCACATCTCTAGACTTGTGTCGTAGAGCAAGATGTATTGATGAGATGGGAAAATTAAATTCCTGCACACGAGCTCCAACAATTTGCTTCCCTTGTTTGGTAATAACATCCTCCGTGACAGAAACTTTTGTCGTACCTAAAGCTTCCTGGTTAGATAATGATTGTTTCACTGGATCGCCAAAATTTCTTGATGGCACGGAACTAGTATTAAGATGGATAGGCGCATTGGTCTTGCATCATTTTCATTAAAAAAGAGCATTCAGGATGGATAGGTGCACATAGATTAAACATAGAGGACAACCTCTTCTTAATATGAAGAAAACACGAAGACTTACTAGATTGCCGTGCAAGAATTCCAGCAATAGTTTTACAAGTAGGGGAATTCATGTTCCTATTTAATGCCAAATTTTTCAGCAAATTCGGACCAACACTGTTGGAGTCTACTTTAGCTTATGGCTTCAGTACTTAGGAGTCAAACCCTCGTAAAGTACTACCAAGACTAGGACGAAGCACATTTGTAGAATTTTGTCACATGGAAGGATGTATTGATGAGATGAGAAAATTAAATTTATGCTCAATAGCTCCAAGAACTTGCTTTCCTTTATCACCCTTAGAACCAATAACAGAAGCAGAACTAATACGTGGATTGCTGTCTAGTGAACTAAATGTCTTTCGGAAAAAATCAATTTGACTTGCATCTTCAACATGAACTACAACTTTTGTCTTGGATTCATTTTCATCTGAAAAATACTGTTCAGGACGGGTAGGTCCATGAGGATCGATCATAGAGTACCACCTCTTCTTAATAGGAAGAACATGCAAAGAGTTACTAGACTGCTGGGCAACAACTCCACGCTGCAAATATGTTGTGAACCGAGAGGGACATGTAAGGGACTATGGACTAGAATTGGTGGAGACTAATTTAGTTGGGATTATTGGGCCGAGTAAAATGTTGGAGTGTTATTTGGGATCCCATCCCAATTATCATTTGGTTAAAATGGCAAATGAGTTGGAAATAAGGGTTTATGCATATTGTGAAACAAATTGTCAGATCCTCTCGTCTCTTTCTAAAGTCTAATGTTCTCATCCCCATTCTTATCTCTATCTTTAGTTACTTGTTATTTCAGTATTTTGCGTTGTTATTCAATAGTTGAACTGTTGTCGTTGTAATTTGGATATTAGTAATTATATAATACTTTAGTATTTTAGTTGAGAATTCAGGTTAACTACAAAATACATGATGAAATAGAGTAATATTAAAAAACAAAGCAAGTATTACACAGTTAGGCCAATTTTCAATAGCAAATAAGAAATCAGATTGAGGCCTCTTTGTTCCCGGAAACTTGCATAATTCCAGAATCAGCTAAAGCTAAAGCTTTTCTTTTCATCTCGAGATGATATCAATCATGTCATAGAACACAATTGAAACCAAATAAGCCAAAATATAAGTACAACACAAAAGAAGAGAAACAGAACACTCATACTCATTTCAATCTCAGCTGCTCATTTAAAAAAAACGAATTTAGTCTCCCTTACTTTACTCGACTTCAACCTCTACAACTAGTTTGTTTTTCAGCTCCCATGAATTCATCCTTGACCTTAAGGATCAACAATCAAACCCCGGAAACTTTGCCTTAAGGAACTAGTAGTCTTCCCAAGTTGACTTCTCAGATCATAACATTCCATCTCCCAATGAGTATGAATGTTTTGTTTCTCTTCTTTTGTACTAAACTGATATTTTTGGATTATCTGGGTTCAATTCTGTTCTACGACTTGATTGATATTGTCTCGAGATGAAAAGAAAAGCTTTAGATTTAGCTGATTCTAGAATCATGCTAGTTTCTGGGAAAGAAGAGGTCTTAATCTGATTTCTTATTTGCTATTGAAAAATTGGTCTAACTGTGTAATAATTTCTTTGTTTTTTAATATTACTCTATTTCATCATGTATTTGCAGCTTGGAGTTCTTTCTCGACACTATAGTAACTCTTCATCTTTTGTTCCTTTTAAGAAGAGGTTGTATCTTCATGCACCTATCCATTCTGAATGCTCTTGTTCTTATAAATATGAATCCAAGACCAAAGATGTTTTTTCCGTTGAAGATGCAAGTCAAACTGATCTGTTACGTAAGACATCTAGTTCACTAGACATCAAGCCACTAATTAGTTCTGCTTCTATTATTGGTTCTAACGGTGATAAAGAAAAGAATGTTATTGGAACTAGTGAGCAGGAATTTTAATTTTCCCATCTCATTAATACATCCCGCCATATGACACAAAGTCCTTGGAAGTGCTTCGTCTTAGTCTTGGTAGTACTTTTCAAAGGCGTGACTCCTCAGTACTGCAGCCATTGACTAAAGTATACACCAACAATGTTAGTCCAAGTGGAACATTTGAGATTAATGTTGTAAAAACTGAGGTTGCGAGGTAGAATCTGCAGTCTATTGAGTTGTCAACTGAAGATCCAACCCAATAAGTTAGCCTGGAAATATCCATGACATCATATGTGATTGCTCACCGTTCAGTTGGAAAGATTTTGCCAGTTTAGGAGAGTTCTTCTTCTTCTTCTTCTTCTTCTTCTACGTTGATAATGCCTTTGGCCTCTCATAAATGATGCACTTTCTAGATTGTCTGTGAGTGGTGCGGAAGCTGATATTGCTGCTAACAATGCTCTAGGTCAGGCAAATGCTAATACTGCTGCTGAAAATGCTAAATTTTGACCTCAAATAACTAAATGTATCCAGTGATAAAGGGGAGGCATCTTTTTCCGTGAGTATTAATATGGAAGATCACACGGTATACAAAAAACCACAAGGCATACATAATTTAGTTGCAAGTGGTGAGGGGTCAGCAAATGATGGGGAAAAGATAAGTATATCAGCTGGTACAGAAGAAGAATGTTATGCTTCTGCTTATGAATCTGATGGTTATCAGAATTTTGCAAGACATGTTGACACTGAGAGTGTGGGTTTTTTCCAGAGAGGATGGCATATACGAAGACGGTAAGATCTGAGAACTAAAGATGTAGTCAATTGCAGAAGACCCAATGGCTGCGGAGATGGATTCAGGAAAAAATAATGAATCTTCAAGTAAAAATGTTCATTCTTCTCTTTGGAAATAG</genome_strand>
        <mrna_strand>CTTTTTGCTGTTCAAGAACAATGGAGAAGGTTCTCATTTGCTTCCTATACATATATATGTATCTGTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGCAAATGCTAATACTGCTGCTGAAAATGCTAAATTTTGACCTCAAATAACTAAATGTATCCAGTGATAAAGGGGAGGCATCTTTTTCCGTGAGTATTAATATGGAAGATCACACGGTATACAAAAAACCACAAGGCATACATAATTTAGTTGCAAGTGGTGAGGGGTCAGCAAATGATGGGGAAAAGATAAGTATATCAGCTGGTACAGAAGAAGAATGTTATGCTTCTGCTTATGAATCTGATGGTTATCAGAATTTTGCAAGACATGTTGACACTGAGAGTGTGGGTTTTTTCCAGAGAGGATGGCATATACGAAGACGGTAAGATCTGAGAACTAAAGATGTAGTCAATTGCAGAAGACCCAATGGCTGCGGAGATGGATTCAGGAAAAAATAATGAATCTTCAAGTAAAAATGTTCATTCTTCTCTTTGGAAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>24</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5980" PGL_stop="3718"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5980" e_stop="5950"/>
            <exon e_start="4424" e_stop="3718"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.613"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.613">
            <gDNA_exon_boundary e_start="5980" e_stop="5950" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5949" i_stop="4425" i_length="1525"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="4424" e_stop="3718" e_length="707"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5980" stop="5950"/>
              <exon start="4424" stop="3718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5980" stop="5950"/>
              <exon start="4424" stop="3964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATACCGTTTTGAAATTTTTTTAACATTTT : CTTGAGATAAAATTCGTGAAAATACAATATTCAAAAGTATCTTCGAATACATTATTATAATATTATGTCTAGCTTATTTATTACCTCCTTTTATTTTTACTTCCCAATAACAAAGTGAAATAAAATAAAATCCTATAGGAAAATCCCCATGCAATTGTTACCCACAAACAAATCCATTTGTTCAGTTGAGTTATCCCTTGTTGCACCAATATATCTGCGCCACTCGTGAAACAAGTGGAACTTGTTATCGTTACGTTCAATGTTTCGCTTATATTGTCCAATAATTTCTCCTTTATTGAATTCGGTAAATCCCCCAATTGGCTGTTATCGAACAACTGAACCCCACGAACGAAGCATTTCGTGGGGTCTTTGAATTCGTTCAGCAACACTGCTTCATATGGGTATTTCACGAGGGAGAGGTAATGAAACCATATCCAGTACGATGGGATCCTATCGCGATTCATGTAGAATCCACTGAAGAGGAGGAAGTATCCGAGTAATGCAACTACGATTGTGTAACCGATCATGACATGAGGAACGACACTAGAGAGGAAAGTGACGAATGAATTCCCCGCCCAGATTGAAGCTAGAACGACAGAGAAGTAGAACAAAAAGCCCGAAGCTCCACCGTCTAGGCCAACAGCCCAGAAAGTCAGGGCTGCGAACGATAGGGAGAGGATTATCAATGATGGTAGCGAAACCAAAGC</gDNA_template>
            <first_frame> I  Y  R  F  E  I  F  L  T  F   : S  *  D  K  I  R  E  N  T  I  F  K  S  I  F  E  Y  I  I  I  I  L  C  L  A  Y  L  L  P  P  F  I  F  T  S  Q  *  Q  S  E  I  K  *  N  P  I  G  K  S  P  C  N  C  Y  P  Q  T  N  P  F  V  Q  L  S  Y  P  L  L  H  Q  Y  I  C  A  T  R  E  T  S  G  T  C  Y  R  Y  V  Q  C  F  A  Y  I  V  Q  *  F  L  L  Y  *  I  R  *  I  P  Q  L  A  V  I  E  Q  L  N  P  T  N  E  A  F  R  G  V  F  E  F  V  Q  Q  H  C  F  I  W  V  F  H  E  G  E  V  M  K  P  Y  P  V  R  W  D  P  I  A  I  H  V  E  S  T  E  E  E  E  V  S  E  *  C  N  Y  D  C  V  T  D  H  D  M  R  N  D  T  R  E  E  S  D  E  *  I  P  R  P  D  *  S  *  N  D  R  E  V  E  Q  K  A  R  S  S  T  V  *  A  N  S  P  E  S  Q  G  C  E  R  *  G  E  D  Y  Q  *  W  *  R  N  Q  S </first_frame>
            <second_frame>  Y  T  V  L  K  F  F  *  H  F  :  L  E  I  K  F  V  K  I  Q  Y  S  K  V  S  S  N  T  L  L  *  Y  Y  V  *  L  I  Y  Y  L  L  L  F  L  L  P  N  N  K  V  K  *  N  K  I  L  *  E  N  P  H  A  I  V  T  H  K  Q  I  H  L  F  S  *  V  I  P  C  C  T  N  I  S  A  P  L  V  K  Q  V  E  L  V  I  V  T  F  N  V  S  L  I  L  S  N  N  F  S  F  I  E  F  G  K  S  P  N  W  L  L  S  N  N  *  T  P  R  T  K  H  F  V  G  S  L  N  S  F  S  N  T  A  S  Y  G  Y  F  T  R  E  R  *  *  N  H  I  Q  Y  D  G  I  L  S  R  F  M  *  N  P  L  K  R  R  K  Y  P  S  N  A  T  T  I  V  *  P  I  M  T  *  G  T  T  L  E  R  K  V  T  N  E  F  P  A  Q  I  E  A  R  T  T  E  K  *  N  K  K  P  E  A  P  P  S  R  P  T  A  Q  K  V  R  A  A  N  D  R  E  R  I  I  N  D  G  S  E  T  K   </second_frame>
            <third_frame>   I  P  F  *  N  F  F  N  I  F :   L  R  *  N  S  *  K  Y  N  I  Q  K  Y  L  R  I  H  Y  Y  N  I  M  S  S  L  F  I  T  S  F  Y  F  Y  F  P  I  T  K  *  N  K  I  K  S  Y  R  K  I  P  M  Q  L  L  P  T  N  K  S  I  C  S  V  E  L  S  L  V  A  P  I  Y  L  R  H  S  *  N  K  W  N  L  L  S  L  R  S  M  F  R  L  Y  C  P  I  I  S  P  L  L  N  S  V  N  P  P  I  G  C  Y  R  T  T  E  P  H  E  R  S  I  S  W  G  L  *  I  R  S  A  T  L  L  H  M  G  I  S  R  G  R  G  N  E  T  I  S  S  T  M  G  S  Y  R  D  S  C  R  I  H  *  R  G  G  S  I  R  V  M  Q  L  R  L  C  N  R  S  *  H  E  E  R  H  *  R  G  K  *  R  M  N  S  P  P  R  L  K  L  E  R  Q  R  S  R  T  K  S  P  K  L  H  R  L  G  Q  Q  P  R  K  S  G  L  R  T  I  G  R  G  L  S  M  M  V  A  K  P  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0050I18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9732" PGL_stop="9220"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9732" e_stop="9220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="9732" e_stop="9220" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9732" stop="9406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9643" stop="9220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358119" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCTTCTTTTCATAGACAAACTTCTCATCATATAAAAAAATAAAAAATGAGTAGAATTGTTGCTCAAAATGTATCACCAGTAAGAGATTGCGTACCTCTTTATGATCGGAGACAAACGGTAGAAATGTCATCGCCGACGTTTGCTCAGTTGTTGAACAACGTCGGAGATGATGTCACCGGCGACGAAACTGGAGGTTCAGTTCACCAAATTCTGACAATGGAACTGCCTCTGCAGCAATCGATTCCATTTGTATTGTCATTCAGTAACCTCACATACAGCGTGAGAGTCCGCCGGAAAAATATTTTTCCGGCGATGTCCGGCCGCCGGAACCGGACAGATGAACCGCGGTGCACGAGGACGAAGGTGCTTTTGAATGATATATCAGGAGAGGCGCGTGACGGAGAACTACTCGCGGTGCTCGGCGCGTCTGGTTCGGGGAAATCGACCTTGATCGATGCTTTAGCTAATCGAATTTCGAAAGATAGCTTGAAAGGGGAGATGAAATTGAAC</gDNA_template>
            <first_frame> F  S  S  F  H  R  Q  T  S  H  H  I  K  K  *  K  M  S  R  I  V  A  Q  N  V  S  P  V  R  D  C  V  P  L  Y  D  R  R  Q  T  V  E  M  S  S  P  T  F  A  Q  L  L  N  N  V  G  D  D  V  T  G  D  E  T  G  G  S  V  H  Q  I  L  T  M  E  L  P  L  Q  Q  S  I  P  F  V  L  S  F  S  N  L  T  Y  S  V  R  V  R  R  K  N  I  F  P  A  M  S  G  R  R  N  R  T  D  E  P  R  C  T  R  T  K  V  L  L  N  D  I  S  G  E  A  R  D  G  E  L  L  A  V  L  G  A  S  G  S  G  K  S  T  L  I  D  A  L  A  N  R  I  S  K  D  S  L  K  G  E  M  K  L  N </first_frame>
            <second_frame>  F  L  L  F  I  D  K  L  L  I  I  *  K  N  K  K  *  V  E  L  L  L  K  M  Y  H  Q  *  E  I  A  Y  L  F  M  I  G  D  K  R  *  K  C  H  R  R  R  L  L  S  C  *  T  T  S  E  M  M  S  P  A  T  K  L  E  V  Q  F  T  K  F  *  Q  W  N  C  L  C  S  N  R  F  H  L  Y  C  H  S  V  T  S  H  T  A  *  E  S  A  G  K  I  F  F  R  R  C  P  A  A  G  T  G  Q  M  N  R  G  A  R  G  R  R  C  F  *  M  I  Y  Q  E  R  R  V  T  E  N  Y  S  R  C  S  A  R  L  V  R  G  N  R  P  *  S  M  L  *  L  I  E  F  R  K  I  A  *  K  G  R  *  N  *   </second_frame>
            <third_frame>   F  F  F  S  *  T  N  F  S  S  Y  K  K  I  K  N  E  *  N  C  C  S  K  C  I  T  S  K  R  L  R  T  S  L  *  S  E  T  N  G  R  N  V  I  A  D  V  C  S  V  V  E  Q  R  R  R  *  C  H  R  R  R  N  W  R  F  S  S  P  N  S  D  N  G  T  A  S  A  A  I  D  S  I  C  I  V  I  Q  *  P  H  I  Q  R  E  S  P  P  E  K  Y  F  S  G  D  V  R  P  P  E  P  D  R  *  T  A  V  H  E  D  E  G  A  F  E  *  Y  I  R  R  G  A  *  R  R  T  T  R  G  A  R  R  V  W  F  G  E  I  D  L  D  R  C  F  S  *  S  N  F  E  R  *  L  E  R  G  D  E  I  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0050I18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9687" stop="9220"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSRIVAQNVSPVRDCVPLYDRRQTVEMSSPTFAQLLNNVGDDVTGDETGGSVHQILTMELPLQQSIPFVLSFSNLTYSVRVRRKNIFPAMSGRRNRTDEPRCTRTKVLLNDISGEARDGELLAVLGASGSGKSTLIDALANRISKDSLKGEMKLN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="21356" PGL_stop="22142"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21356" e_stop="22142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="21356" e_stop="22142" e_length="787"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21356" stop="22131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21387" stop="21881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21390" stop="21873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21399" stop="21873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21400" stop="22040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21413" stop="22083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21418" stop="22023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21436" stop="21734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21609" stop="22141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21906" stop="22142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264472" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCAATAACCAGAGGCACTGAAAGCTTCATAAAAAATAAAAAAAATGGCGACCTTAACTTCTTCTACTCTGCAACTCACAAAATCAAACCCTTTCTTCTCAAAATCTCCTCTCAAATTCCACGCGCCGTCGTACTCTTCCTTCACTGTACGCGCCACCACTGAAGAATCTTCACCTTCCGACACAGACGAACAAACCACCGTCGATTCATCCTCCGATCCCGACAGTTTCGAGAATCGGCTCTCCCAAGTCCGTCTCCGGTACCGTAGTGGAACAGGGAAGAAAGCGGAGGTGCGAAAAACTCGAAAGGGCAAAAAAGGTTCATCTGGATCCGGATCCGGGTCGAGCGTGTTTCTCCCACCAATTCCTCTAAAGGAACCTGTTTCCGAAGGTTTACCCGTTGAATTCGGGTTTAGTCCGTTTTCGGAACGGGTCAATGGACGGATCGCCATGCTTGGATTATCCGCATTGCTGTTGGTGGAGCTTGCAACAGGTAAGAGTGTAATTAATTATCATACGCCGGCGATTGTGTTCATTCAGGTTTATTTTGTCGCCGCCGTAGCGGCGGTGTATTTGAAGAATGAGAAAGAGAAAGTTAGCGTTTGGCCTAAATAGTTGAGCTGCCATTGTTGAATTCTCTGAGATTTTTTTTTGAATTGGATGTCTGTATGATAAACTTCTCACAGCTTGTTTTATTTTAGTATATATCTTATTGTCTCGAAGCAACAGTAAAATTTACTCCTTTTATCATTTATAAATTACGAGTTTGAGTTGTAAAATTTAATAC</gDNA_template>
            <first_frame> K  Q  *  P  E  A  L  K  A  S  *  K  I  K  K  M  A  T  L  T  S  S  T  L  Q  L  T  K  S  N  P  F  F  S  K  S  P  L  K  F  H  A  P  S  Y  S  S  F  T  V  R  A  T  T  E  E  S  S  P  S  D  T  D  E  Q  T  T  V  D  S  S  S  D  P  D  S  F  E  N  R  L  S  Q  V  R  L  R  Y  R  S  G  T  G  K  K  A  E  V  R  K  T  R  K  G  K  K  G  S  S  G  S  G  S  G  S  S  V  F  L  P  P  I  P  L  K  E  P  V  S  E  G  L  P  V  E  F  G  F  S  P  F  S  E  R  V  N  G  R  I  A  M  L  G  L  S  A  L  L  L  V  E  L  A  T  G  K  S  V  I  N  Y  H  T  P  A  I  V  F  I  Q  V  Y  F  V  A  A  V  A  A  V  Y  L  K  N  E  K  E  K  V  S  V  W  P  K  *  L  S  C  H  C  *  I  L  *  D  F  F  L  N  W  M  S  V  *  *  T  S  H  S  L  F  Y  F  S  I  Y  L  I  V  S  K  Q  Q  *  N  L  L  L  L  S  F  I  N  Y  E  F  E  L  *  N  L  I  </first_frame>
            <second_frame>  S  N  N  Q  R  H  *  K  L  H  K  K  *  K  K  W  R  P  *  L  L  L  L  C  N  S  Q  N  Q  T  L  S  S  Q  N  L  L  S  N  S  T  R  R  R  T  L  P  S  L  Y  A  P  P  L  K  N  L  H  L  P  T  Q  T  N  K  P  P  S  I  H  P  P  I  P  T  V  S  R  I  G  S  P  K  S  V  S  G  T  V  V  E  Q  G  R  K  R  R  C  E  K  L  E  R  A  K  K  V  H  L  D  P  D  P  G  R  A  C  F  S  H  Q  F  L  *  R  N  L  F  P  K  V  Y  P  L  N  S  G  L  V  R  F  R  N  G  S  M  D  G  S  P  C  L  D  Y  P  H  C  C  W  W  S  L  Q  Q  V  R  V  *  L  I  I  I  R  R  R  L  C  S  F  R  F  I  L  S  P  P  *  R  R  C  I  *  R  M  R  K  R  K  L  A  F  G  L  N  S  *  A  A  I  V  E  F  S  E  I  F  F  *  I  G  C  L  Y  D  K  L  L  T  A  C  F  I  L  V  Y  I  L  L  S  R  S  N  S  K  I  Y  S  F  Y  H  L  *  I  T  S  L  S  C  K  I  *  Y </second_frame>
            <third_frame>   A  I  T  R  G  T  E  S  F  I  K  N  K  K  N  G  D  L  N  F  F  Y  S  A  T  H  K  I  K  P  F  L  L  K  I  S  S  Q  I  P  R  A  V  V  L  F  L  H  C  T  R  H  H  *  R  I  F  T  F  R  H  R  R  T  N  H  R  R  F  I  L  R  S  R  Q  F  R  E  S  A  L  P  S  P  S  P  V  P  *  W  N  R  E  E  S  G  G  A  K  N  S  K  G  Q  K  R  F  I  W  I  R  I  R  V  E  R  V  S  P  T  N  S  S  K  G  T  C  F  R  R  F  T  R  *  I  R  V  *  S  V  F  G  T  G  Q  W  T  D  R  H  A  W  I  I  R  I  A  V  G  G  A  C  N  R  *  E  C  N  *  L  S  Y  A  G  D  C  V  H  S  G  L  F  C  R  R  R  S  G  G  V  F  E  E  *  E  R  E  S  *  R  L  A  *  I  V  E  L  P  L  L  N  S  L  R  F  F  F  E  L  D  V  C  M  I  N  F  S  Q  L  V  L  F  *  Y  I  S  Y  C  L  E  A  T  V  K  F  T  P  F  I  I  Y  K  L  R  V  *  V  V  K  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0050I18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21389" stop="21970"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIKKMATLTSSTLQLTKSNPFFSKSPLKFHAPSYSSFTVRATTEESSPSDTDEQTTVDSSSDPDSFENRLSQVRLRYRSGTGKKAEVRKTRKGKKGSSGSGSGSSVFLPPIPLKEPVSEGLPVEFGFSPFSERVNGRIAMLGLSALLLVELATGKSVINYHTPAIVFIQVYFVAAVAAVYLKNEKEKVSVWPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="21693" PGL_stop="21410"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21693" e_stop="21410"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="21693" e_stop="21410" e_length="284"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21693" stop="21410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280068" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCCGGATCCAGATGAACCTTTTTTGCCCTTTCGAGTTTTTCGCACCTCCGCTTTCTTCCCTGTTCCACTACGGTACCGGAGACGGACTTGGGAGAGCCGATTCTCGAAACTGTCGGGATCGGAGGATGAATCGACGGTGGTTTGTTCGTCTGTGTCGGAAGGTGAAGATTCTTCAGTGGTGGCGCGTACAGTGAAGGAAGAGTACGACGGCGCGTGGAATTTGAGAGGAGATTTTGAGAAGAAAGGGTTTGATTTTGTGAGTTGCAGAGTAGAAGAAGTTAA</gDNA_template>
            <first_frame> D  P  D  P  D  E  P  F  L  P  F  R  V  F  R  T  S  A  F  F  P  V  P  L  R  Y  R  R  R  T  W  E  S  R  F  S  K  L  S  G  S  E  D  E  S  T  V  V  C  S  S  V  S  E  G  E  D  S  S  V  V  A  R  T  V  K  E  E  Y  D  G  A  W  N  L  R  G  D  F  E  K  K  G  F  D  F  V  S  C  R  V  E  E  V   </first_frame>
            <second_frame>  I  R  I  Q  M  N  L  F  C  P  F  E  F  F  A  P  P  L  S  S  L  F  H  Y  G  T  G  D  G  L  G  R  A  D  S  R  N  C  R  D  R  R  M  N  R  R  W  F  V  R  L  C  R  K  V  K  I  L  Q  W  W  R  V  Q  *  R  K  S  T  T  A  R  G  I  *  E  E  I  L  R  R  K  G  L  I  L  *  V  A  E  *  K  K  L  </second_frame>
            <third_frame>   S  G  S  R  *  T  F  F  A  L  S  S  F  S  H  L  R  F  L  P  C  S  T  T  V  P  E  T  D  L  G  E  P  I  L  E  T  V  G  I  G  G  *  I  D  G  G  L  F  V  C  V  G  R  *  R  F  F  S  G  G  A  Y  S  E  G  R  V  R  R  R  V  E  F  E  R  R  F  *  E  E  R  V  *  F  C  E  L  Q  S  R  R  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0050I18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21693" stop="21412"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPDPDEPFLPFRVFRTSAFFPVPLRYRRRTWESRFSKLSGSEDESTVVCSSVSEGEDSSVVARTVKEEYDGAWNLRGDFEKKGFDFVSCRVEEV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0050I18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21692" stop="21498"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRIQMNLFCPFEFFAPPLSSLFHYGTGDGLGRADSRNCRDRRMNRRWFVRLCRKVKILQWWRVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="24450" PGL_stop="24117"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24450" e_stop="24117"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="24450" e_stop="24117" e_length="334"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24450" stop="24117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216285" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGGGAGAATGCACTGATGCATGTCTTTATTTCAGTAAAAAAAGAAGGCTTGTTGCTAGTAGGCCGTCCAAGGAACGTGCTTTTACCATTGCTTTCTTTTGGAGGAGAAAACTACTAGTTTAATATGCTCTACTATGCTGGCTTGAATGCTATTTTTACTAGTTTTAAGTTGCTAATATGCATGCTGGCTTTGTGTAAAGCTTCTGGGTTCAGTGGTTCTAACCAGCTTGTGTTGGCCAGTTAGAGAAACAGGCCAGTGATGGGAACTTATCCAAGGTTAAATTATGCAGGTTAAGTATGATATTTAACAATAACACCATCTGTGACACCTTT</gDNA_template>
            <first_frame> L  G  R  M  H  *  C  M  S  L  F  Q  *  K  K  K  A  C  C  *  *  A  V  Q  G  T  C  F  Y  H  C  F  L  L  E  E  K  T  T  S  L  I  C  S  T  M  L  A  *  M  L  F  L  L  V  L  S  C  *  Y  A  C  W  L  C  V  K  L  L  G  S  V  V  L  T  S  L  C  W  P  V  R  E  T  G  Q  *  W  E  L  I  Q  G  *  I  M  Q  V  K  Y  D  I  *  Q  *  H  H  L  *  H  L  </first_frame>
            <second_frame>  W  G  E  C  T  D  A  C  L  Y  F  S  K  K  R  R  L  V  A  S  R  P  S  K  E  R  A  F  T  I  A  F  F  W  R  R  K  L  L  V  *  Y  A  L  L  C  W  L  E  C  Y  F  Y  *  F  *  V  A  N  M  H  A  G  F  V  *  S  F  W  V  Q  W  F  *  P  A  C  V  G  Q  L  E  K  Q  A  S  D  G  N  L  S  K  V  K  L  C  R  L  S  M  I  F  N  N  N  T  I  C  D  T  F </second_frame>
            <third_frame>   G  E  N  A  L  M  H  V  F  I  S  V  K  K  E  G  L  L  L  V  G  R  P  R  N  V  L  L  P  L  L  S  F  G  G  E  N  Y  *  F  N  M  L  Y  Y  A  G  L  N  A  I  F  T  S  F  K  L  L  I  C  M  L  A  L  C  K  A  S  G  F  S  G  S  N  Q  L  V  L  A  S  *  R  N  R  P  V  M  G  T  Y  P  R  L  N  Y  A  G  *  V  *  Y  L  T  I  T  P  S  V  T  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0050I18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="26554" PGL_stop="25049"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25654" e_stop="25049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="25654" e_stop="25049" e_length="606"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25654" stop="25049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25520" stop="25252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248592" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGCATGATTTTGATAGCTATGGAGGTGTAGCTGATTATCGCTTTAGACCTAAACGTAGACCTACTGTCGGGGAATCTGAAATTGAACGTAACGATGGACCGGATGGTCATTTTGTTCGGGGCAATACAAAGTTTACCACAATGCAGAGAAGAGGTTTCCCTCGAATGCGGTCTAAATCTCCTGTTAGATCTCGTACACGGTCCCCTGGCCCTTGGTCATCTCCTCGGAGGAGATTGAATGAAGGATATAATAATGGTCCCCCAGATTCATCTCATCACAGGTCACCAGCTATGTACAGGGAAGATAGGATGAGGTCTTCTCCACGGACTTCTTTCACTGAAGAGATAGTTCTCCGAAGACGTGATTCCCCCTCATATACTACTCGGCGTCTGAATGATTTACGGGACGTGGATGCTGTACAGGAGCACAGTCATCCGAGGTCTCTTTCTAGCAGAAGAAGTCCACCTGATCGGGTATTTACTAGAAGCAATAGGAGACTTGAGGTTTTAGATCGTCGGGAGAGGGCTGATGGGGATGAGTACTTTGATGGGCCGATACACACTGCTAGATTTCATGATCTTCGTGGTGGTGGAAGTACCGATGA</gDNA_template>
            <first_frame> W  A  *  F  *  *  L  W  R  C  S  *  L  S  L  *  T  *  T  *  T  Y  C  R  G  I  *  N  *  T  *  R  W  T  G  W  S  F  C  S  G  Q  Y  K  V  Y  H  N  A  E  K  R  F  P  S  N  A  V  *  I  S  C  *  I  S  Y  T  V  P  W  P  L  V  I  S  S  E  E  I  E  *  R  I  *  *  W  S  P  R  F  I  S  S  Q  V  T  S  Y  V  Q  G  R  *  D  E  V  F  S  T  D  F  F  H  *  R  D  S  S  P  K  T  *  F  P  L  I  Y  Y  S  A  S  E  *  F  T  G  R  G  C  C  T  G  A  Q  S  S  E  V  S  F  *  Q  K  K  S  T  *  S  G  I  Y  *  K  Q  *  E  T  *  G  F  R  S  S  G  E  G  *  W  G  *  V  L  *  W  A  D  T  H  C  *  I  S  *  S  S  W  W  W  K  Y  R  * </first_frame>
            <second_frame>  G  H  D  F  D  S  Y  G  G  V  A  D  Y  R  F  R  P  K  R  R  P  T  V  G  E  S  E  I  E  R  N  D  G  P  D  G  H  F  V  R  G  N  T  K  F  T  T  M  Q  R  R  G  F  P  R  M  R  S  K  S  P  V  R  S  R  T  R  S  P  G  P  W  S  S  P  R  R  R  L  N  E  G  Y  N  N  G  P  P  D  S  S  H  H  R  S  P  A  M  Y  R  E  D  R  M  R  S  S  P  R  T  S  F  T  E  E  I  V  L  R  R  R  D  S  P  S  Y  T  T  R  R  L  N  D  L  R  D  V  D  A  V  Q  E  H  S  H  P  R  S  L  S  S  R  R  S  P  P  D  R  V  F  T  R  S  N  R  R  L  E  V  L  D  R  R  E  R  A  D  G  D  E  Y  F  D  G  P  I  H  T  A  R  F  H  D  L  R  G  G  G  S  T  D   </second_frame>
            <third_frame>   G  M  I  L  I  A  M  E  V  *  L  I  I  A  L  D  L  N  V  D  L  L  S  G  N  L  K  L  N  V  T  M  D  R  M  V  I  L  F  G  A  I  Q  S  L  P  Q  C  R  E  E  V  S  L  E  C  G  L  N  L  L  L  D  L  V  H  G  P  L  A  L  G  H  L  L  G  G  D  *  M  K  D  I  I  M  V  P  Q  I  H  L  I  T  G  H  Q  L  C  T  G  K  I  G  *  G  L  L  H  G  L  L  S  L  K  R  *  F  S  E  D  V  I  P  P  H  I  L  L  G  V  *  M  I  Y  G  T  W  M  L  Y  R  S  T  V  I  R  G  L  F  L  A  E  E  V  H  L  I  G  Y  L  L  E  A  I  G  D  L  R  F  *  I  V  G  R  G  L  M  G  M  S  T  L  M  G  R  Y  T  L  L  D  F  M  I  F  V  V  V  E  V  P  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0050I18.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25653" stop="25051"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GHDFDSYGGVADYRFRPKRRPTVGESEIERNDGPDGHFVRGNTKFTTMQRRGFPRMRSKSPVRSRTRSPGPWSSPRRRLNEGYNNGPPDSSHHRSPAMYREDRMRSSPRTSFTEEIVLRRRDSPSYTTRRLNDLRDVDAVQEHSHPRSLSSRRSPPDRVFTRSNRRLEVLDRRERADGDEYFDGPIHTARFHDLRGGGSTD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26554" e_stop="25892"/>
            <exon e_start="25404" e_stop="25207"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="26554" e_stop="25892" e_length="663"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25891" i_stop="25405" i_length="487"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25404" e_stop="25207" e_length="198"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26554" stop="25892"/>
              <exon start="25404" stop="25207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702038" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCGATTGAAGAAGACCCAATTGCTGAGGGGATGGAATCAGAGAAAAATAATGTATCTTCCAGCAAAAATGCTCGTTCTTCTGGCATTGGGGAATCTCATTGCTTCAATAATGATGACAAAGGTTACAGTATACCTGTTCATACGGATAATGATGACCTTGTGAAAGGCTGTGATGAAAAAACTGTCCAAATTGATCATAAAGATGGTAAGTTGCAGAGTCCATTATTAGGTAAGGAGGAAACAACAGGAGATGATGAGGAGAGGCCAATTGGCGCTGTTCACCAAGGATCAGTTGATCAATCAGGAATAGCAGATGATCAGGAGAGATGTGAAAAGGACGTCTTTTGTGACGTAACACCTGTTGGAAGCAGTGGGGCTGGAAGAAATGCTGGTGAGGCTAATAACGAGTATATTGGAAGATCTGATATGTCATCGACAGCTGTGTCATCTTTGCAAAATGCCGAAACACCTGTTAATGCTGCCTCTAGTAAAGATATCACAAATTTTGGAAGCAAGAGCCGTATAATCAGCTTACCTCGTGCATCCAATGTGACACCACCTAGTAATTTCAGACCTGTTACAGGTAGATCACTGCCTTCAAGAAGTGGAAGAGAAAGGTATTCAGATATGGAGGAGGAGAAATTTCATCTACGAAGGAATAG : AATAATGGTCCCCCAGATTCATCTCATCACAGGTCACCAGCTATGTACAGGGAAGATAGGATGAGGTCTTCTCCACGGACTTCTTTCACTGAAGAGATAGTTCTCCGAAGACGTGATTCCCCCTCATATACTACTCGGCGTCTGAATGATTTACGGGACGTGGATGCTGTACAGGAGCACAGTCATCCGAGGTCTCTT</gDNA_template>
            <first_frame> I  D  *  R  R  P  N  C  *  G  D  G  I  R  E  K  *  C  I  F  Q  Q  K  C  S  F  F  W  H  W  G  I  S  L  L  Q  *  *  *  Q  R  L  Q  Y  T  C  S  Y  G  *  *  *  P  C  E  R  L  *  *  K  N  C  P  N  *  S  *  R  W  *  V  A  E  S  I  I  R  *  G  G  N  N  R  R  *  *  G  E  A  N  W  R  C  S  P  R  I  S  *  S  I  R  N  S  R  *  S  G  E  M  *  K  G  R  L  L  *  R  N  T  C  W  K  Q  W  G  W  K  K  C  W  *  G  *  *  R  V  Y  W  K  I  *  Y  V  I  D  S  C  V  I  F  A  K  C  R  N  T  C  *  C  C  L  *  *  R  Y  H  K  F  W  K  Q  E  P  Y  N  Q  L  T  S  C  I  Q  C  D  T  T  *  *  F  Q  T  C  Y  R  *  I  T  A  F  K  K  W  K  R  K  V  F  R  Y  G  G  G  E  I  S  S  T  K  E  *  :  N  N  G  P  P  D  S  S  H  H  R  S  P  A  M  Y  R  E  D  R  M  R  S  S  P  R  T  S  F  T  E  E  I  V  L  R  R  R  D  S  P  S  Y  T  T  R  R  L  N  D  L  R  D  V  D  A  V  Q  E  H  S  H  P  R  S  L </first_frame>
            <second_frame>  S  I  E  E  D  P  I  A  E  G  M  E  S  E  K  N  N  V  S  S  S  K  N  A  R  S  S  G  I  G  E  S  H  C  F  N  N  D  D  K  G  Y  S  I  P  V  H  T  D  N  D  D  L  V  K  G  C  D  E  K  T  V  Q  I  D  H  K  D  G  K  L  Q  S  P  L  L  G  K  E  E  T  T  G  D  D  E  E  R  P  I  G  A  V  H  Q  G  S  V  D  Q  S  G  I  A  D  D  Q  E  R  C  E  K  D  V  F  C  D  V  T  P  V  G  S  S  G  A  G  R  N  A  G  E  A  N  N  E  Y  I  G  R  S  D  M  S  S  T  A  V  S  S  L  Q  N  A  E  T  P  V  N  A  A  S  S  K  D  I  T  N  F  G  S  K  S  R  I  I  S  L  P  R  A  S  N  V  T  P  P  S  N  F  R  P  V  T  G  R  S  L  P  S  R  S  G  R  E  R  Y  S  D  M  E  E  E  K  F  H  L  R  R  N  R :   I  M  V  P  Q  I  H  L  I  T  G  H  Q  L  C  T  G  K  I  G  *  G  L  L  H  G  L  L  S  L  K  R  *  F  S  E  D  V  I  P  P  H  I  L  L  G  V  *  M  I  Y  G  T  W  M  L  Y  R  S  T  V  I  R  G  L   </second_frame>
            <third_frame>   R  L  K  K  T  Q  L  L  R  G  W  N  Q  R  K  I  M  Y  L  P  A  K  M  L  V  L  L  A  L  G  N  L  I  A  S  I  M  M  T  K  V  T  V  Y  L  F  I  R  I  M  M  T  L  *  K  A  V  M  K  K  L  S  K  L  I  I  K  M  V  S  C  R  V  H  Y  *  V  R  R  K  Q  Q  E  M  M  R  R  G  Q  L  A  L  F  T  K  D  Q  L  I  N  Q  E  *  Q  M  I  R  R  D  V  K  R  T  S  F  V  T  *  H  L  L  E  A  V  G  L  E  E  M  L  V  R  L  I  T  S  I  L  E  D  L  I  C  H  R  Q  L  C  H  L  C  K  M  P  K  H  L  L  M  L  P  L  V  K  I  S  Q  I  L  E  A  R  A  V  *  S  A  Y  L  V  H  P  M  *  H  H  L  V  I  S  D  L  L  Q  V  D  H  C  L  Q  E  V  E  E  K  G  I  Q  I  W  R  R  R  N  F  I  Y  E  G  I   : E  *  W  S  P  R  F  I  S  S  Q  V  T  S  Y  V  Q  G  R  *  D  E  V  F  S  T  D  F  F  H  *  R  D  S  S  P  K  T  *  F  P  L  I  Y  Y  S  A  S  E  *  F  T  G  R  G  C  C  T  G  A  Q  S  S  E  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0050I18.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26553" stop="25892"/>
                    <exon start="25404" stop="25341"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIEEDPIAEGMESEKNNVSSSKNARSSGIGESHCFNNDDKGYSIPVHTDNDDLVKGCDEKTVQIDHKDGKLQSPLLGKEETTGDDEERPIGAVHQGSVDQSGIADDQERCEKDVFCDVTPVGSSGAGRNAGEANNEYIGRSDMSSTAVSSLQNAETPVNAASSKDITNFGSKSRIISLPRASNVTPPSNFRPVTGRSLPSRSGRERYSDMEEEKFHLRRNRIMVPQIHLITGHQLCTGKIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="37185" PGL_stop="36661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37185" e_stop="36661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="37185" e_stop="36661" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37185" stop="36661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37161" stop="36694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37131" stop="36743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367696" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAACTAGTTGAACAACTATAGTAAAAGCTCTGTGGCAGTCCTCTCTGGAAAAACAAATTGAAGGCAATTTGTAAAAATCTACATATTTTTTCTTATAGTGAATTTTGTTTAGATTGAACTTGCTTGAATTAATTTGTATGAATATATTCTCTTGTCTAGCTAGGTTTAAGAGTTATGAATAATAAGAATCTTTTCTCCTTGTGTTTTATTTTTTCATTCGACTGGCGCAACTAATTTTTCGGGCTTGTTTGTTAAGTTTTGTAATGTACATTATTCCTGAAGCTGGTTTTGAGATTTCCGAAGAGAACTCTATGACTTGACCTTTTCCCGTTAATAGGGTAATATACTTTCAATCGTGTTCGTACGTCTTTCATTTTTAGTAAAGACATGCTTTCAGATTTTGTGCACTCTAAAAAAAATTAAGTTATGCATATGATGTGTTGTCATGTTGATGTTGTATTGTAGAAACGTAAAAAAATGAATAAATCACGTGGTTCAGCGGCTGATAAATGGACTGATGAA</gDNA_template>
            <first_frame> K  K  L  V  E  Q  L  *  *  K  L  C  G  S  P  L  W  K  N  K  L  K  A  I  C  K  N  L  H  I  F  S  Y  S  E  F  C  L  D  *  T  C  L  N  *  F  V  *  I  Y  S  L  V  *  L  G  L  R  V  M  N  N  K  N  L  F  S  L  C  F  I  F  S  F  D  W  R  N  *  F  F  G  L  V  C  *  V  L  *  C  T  L  F  L  K  L  V  L  R  F  P  K  R  T  L  *  L  D  L  F  P  L  I  G  *  Y  T  F  N  R  V  R  T  S  F  I  F  S  K  D  M  L  S  D  F  V  H  S  K  K  N  *  V  M  H  M  M  C  C  H  V  D  V  V  L  *  K  R  K  K  M  N  K  S  R  G  S  A  A  D  K  W  T  D  E </first_frame>
            <second_frame>  K  N  *  L  N  N  Y  S  K  S  S  V  A  V  L  S  G  K  T  N  *  R  Q  F  V  K  I  Y  I  F  F  L  I  V  N  F  V  *  I  E  L  A  *  I  N  L  Y  E  Y  I  L  L  S  S  *  V  *  E  L  *  I  I  R  I  F  S  P  C  V  L  F  F  H  S  T  G  A  T  N  F  S  G  L  F  V  K  F  C  N  V  H  Y  S  *  S  W  F  *  D  F  R  R  E  L  Y  D  L  T  F  S  R  *  *  G  N  I  L  S  I  V  F  V  R  L  S  F  L  V  K  T  C  F  Q  I  L  C  T  L  K  K  I  K  L  C  I  *  C  V  V  M  L  M  L  Y  C  R  N  V  K  K  *  I  N  H  V  V  Q  R  L  I  N  G  L  M   </second_frame>
            <third_frame>   K  T  S  *  T  T  I  V  K  A  L  W  Q  S  S  L  E  K  Q  I  E  G  N  L  *  K  S  T  Y  F  F  L  *  *  I  L  F  R  L  N  L  L  E  L  I  C  M  N  I  F  S  C  L  A  R  F  K  S  Y  E  *  *  E  S  F  L  L  V  F  Y  F  F  I  R  L  A  Q  L  I  F  R  A  C  L  L  S  F  V  M  Y  I  I  P  E  A  G  F  E  I  S  E  E  N  S  M  T  *  P  F  P  V  N  R  V  I  Y  F  Q  S  C  S  Y  V  F  H  F  *  *  R  H  A  F  R  F  C  A  L  *  K  K  L  S  Y  A  Y  D  V  L  S  C  *  C  C  I  V  E  T  *  K  N  E  *  I  T  W  F  S  G  *  *  M  D  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0050I18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="71806" PGL_stop="70994"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71806" e_stop="71427"/>
            <exon e_start="71328" e_stop="70994"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.782" acc_prob="0.999" e_score="0.997"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="71806" e_stop="71427" e_length="380"/>
          </exon>
          <intron i_serial="1" don_prob="0.782" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71426" i_stop="71329" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="71328" e_stop="70994" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71806" stop="71427"/>
              <exon start="71328" stop="70994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721653" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAAGCAAACCAAGAATAACCTAATAAAAGAGTATTCTTCTTAAACAAGTTCTCATTTCTATCTTCCTCTTTTTTAGTTGAATCTTCCGATCTTAGTTGACGATCTTGGGCTAGCAGAATGCTTCTCGAATTATACTTTTTTCTGTTATTCTCTACATGGCATGAGAGCCATAACCATACGTTGGCTTTTGGGTATTATTTCAATATCGGATTAGAGGTAGATTCAACTGGTTTGACTATATGAATTTTAGCGGCCGTGTTAATGAACCTGGGATGGAGTTGTTGAAGGCTTCTTGAATTATACTTTTCTTCTGCTATTCTCTACATATCATTCGAGAAATGTTGATTCTAGAATCATGCCAGTTTCAGGGAACGAAGAG : CCTGGAGTTGTTGCCACGCAGTCTAGTAACTTGTCATCTCTTCTTCCTTATAAGAAGAAGTTGTATCTTCGTGCATCTATCACTCATGAAGAAGGAAATATGGCAAGAGGCATGGAGGACCCAAGCAAAGGAGAAATGTCAGAGCAAGAAGGTGGTAATTGTAGACGGAGGCATGAAGAATAAATTGATGGCTCTGAAGATTGAAGAATAGAAGATTTTGAGTTGATAGCTCACTGAACCTGTAATATTAGCAATTGCCATGGGAAACTTGTTCTGCAGATTTCTGAGTCCATTTATACTTGGATGAATGATAATTTTCAAAGAGACAGAACGCG</gDNA_template>
            <first_frame> P  S  K  P  R  I  T  *  *  K  S  I  L  L  K  Q  V  L  I  S  I  F  L  F  F  S  *  I  F  R  S  *  L  T  I  L  G  *  Q  N  A  S  R  I  I  L  F  S  V  I  L  Y  M  A  *  E  P  *  P  Y  V  G  F  W  V  L  F  Q  Y  R  I  R  G  R  F  N  W  F  D  Y  M  N  F  S  G  R  V  N  E  P  G  M  E  L  L  K  A  S  *  I  I  L  F  F  C  Y  S  L  H  I  I  R  E  M  L  I  L  E  S  C  Q  F  Q  G  T  K  S :   L  E  L  L  P  R  S  L  V  T  C  H  L  F  F  L  I  R  R  S  C  I  F  V  H  L  S  L  M  K  K  E  I  W  Q  E  A  W  R  T  Q  A  K  E  K  C  Q  S  K  K  V  V  I  V  D  G  G  M  K  N  K  L  M  A  L  K  I  E  E  *  K  I  L  S  *  *  L  T  E  P  V  I  L  A  I  A  M  G  N  L  F  C  R  F  L  S  P  F  I  L  G  *  M  I  I  F  K  E  T  E  R  </first_frame>
            <second_frame>  Q  A  N  Q  E  *  P  N  K  R  V  F  F  L  N  K  F  S  F  L  S  S  S  F  L  V  E  S  S  D  L  S  *  R  S  W  A  S  R  M  L  L  E  L  Y  F  F  L  L  F  S  T  W  H  E  S  H  N  H  T  L  A  F  G  Y  Y  F  N  I  G  L  E  V  D  S  T  G  L  T  I  *  I  L  A  A  V  L  M  N  L  G  W  S  C  *  R  L  L  E  L  Y  F  S  S  A  I  L  Y  I  S  F  E  K  C  *  F  *  N  H  A  S  F  R  E  R  R   : A  W  S  C  C  H  A  V  *  *  L  V  I  S  S  S  L  *  E  E  V  V  S  S  C  I  Y  H  S  *  R  R  K  Y  G  K  R  H  G  G  P  K  Q  R  R  N  V  R  A  R  R  W  *  L  *  T  E  A  *  R  I  N  *  W  L  *  R  L  K  N  R  R  F  *  V  D  S  S  L  N  L  *  Y  *  Q  L  P  W  E  T  C  S  A  D  F  *  V  H  L  Y  L  D  E  *  *  F  S  K  R  Q  N  A </second_frame>
            <third_frame>   K  Q  T  K  N  N  L  I  K  E  Y  S  S  *  T  S  S  H  F  Y  L  P  L  F  *  L  N  L  P  I  L  V  D  D  L  G  L  A  E  C  F  S  N  Y  T  F  F  C  Y  S  L  H  G  M  R  A  I  T  I  R  W  L  L  G  I  I  S  I  S  D  *  R  *  I  Q  L  V  *  L  Y  E  F  *  R  P  C  *  *  T  W  D  G  V  V  E  G  F  L  N  Y  T  F  L  L  L  F  S  T  Y  H  S  R  N  V  D  S  R  I  M  P  V  S  G  N  E  E  :  P  G  V  V  A  T  Q  S  S  N  L  S  S  L  L  P  Y  K  K  K  L  Y  L  R  A  S  I  T  H  E  E  G  N  M  A  R  G  M  E  D  P  S  K  G  E  M  S  E  Q  E  G  G  N  C  R  R  R  H  E  E  *  I  D  G  S  E  D  *  R  I  E  D  F  E  L  I  A  H  *  T  C  N  I  S  N  C  H  G  K  L  V  L  Q  I  S  E  S  I  Y  T  W  M  N  D  N  F  Q  R  D  R  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0050I18.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71540" stop="71427"/>
                    <exon start="71328" stop="71146"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TWDGVVEGFLNYTFLLLFSTYHSRNVDSRIMPVSGNEEPGVVATQSSNLSSLLPYKKKLYLRASITHEEGNMARGMEDPSKGEMSEQEGGNCRRRHEE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0050I18.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71509" stop="71427"/>
                    <exon start="71328" stop="71118"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IILFFCYSLHIIREMLILESCQFQGTKSLELLPRSLVTCHLFFLIRRSCIFVHLSLMKKEIWQEAWRTQAKEKCQSKKVVIVDGGMKNKLMALKIEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="109897" PGL_stop="100790"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109897" e_stop="109830"/>
            <exon e_start="101234" e_stop="100790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109897" e_stop="109830" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.000">
            <gDNA_intron_boundary i_start="109829" i_stop="101235" i_length="8595"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101234" e_stop="100790" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109897" stop="109830"/>
              <exon start="101234" stop="100790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329861" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTTGCTGTTCAAGAACAATGGAGAAGGTTCTCATTTGCTTCCTATACATATATATGTATCTGTAG : GTCAGGCAAATGCTAATACTGCTGCTGAAAATGCTAAATTTTGACCTCAAATAACTAAATGTATCCAGTGATAAAGGGGAGGCATCTTTTTCCGTGAGTATTAATATGGAAGATCACACGGTATACAAAAAACCACAAGGCATACATAATTTAGTTGCAAGTGGTGAGGGGTCAGCAAATGATGGGGAAAAGATAAGTATATCAGCTGGTACAGAAGAAGAATGTTATGCTTCTGCTTATGAATCTGATGGTTATCAGAATTTTGCAAGACATGTTGACACTGAGAGTGTGGGTTTTTTCCAGAGAGGATGGCATATACGAAGACGGTAAGATCTGAGAACTAAAGATGTAGTCAATTGCAGAAGACCCAATGGCTGCGGAGATGGATTCAGGAAAAAATAATGAATCTTCAAGTAAAAATGTTCATTCTTCTCTTTGGAAATAG</gDNA_template>
            <first_frame> L  F  A  V  Q  E  Q  W  R  R  F  S  F  A  S  Y  T  Y  I  C  I  C  R :   S  G  K  C  *  Y  C  C  *  K  C  *  I  L  T  S  N  N  *  M  Y  P  V  I  K  G  R  H  L  F  P  *  V  L  I  W  K  I  T  R  Y  T  K  N  H  K  A  Y  I  I  *  L  Q  V  V  R  G  Q  Q  M  M  G  K  R  *  V  Y  Q  L  V  Q  K  K  N  V  M  L  L  L  M  N  L  M  V  I  R  I  L  Q  D  M  L  T  L  R  V  W  V  F  S  R  E  D  G  I  Y  E  D  G  K  I  *  E  L  K  M  *  S  I  A  E  D  P  M  A  A  E  M  D  S  G  K  N  N  E  S  S  S  K  N  V  H  S  S  L  W  K  * </first_frame>
            <second_frame>  F  L  L  F  K  N  N  G  E  G  S  H  L  L  P  I  H  I  Y  V  S  V   : G  Q  A  N  A  N  T  A  A  E  N  A  K  F  *  P  Q  I  T  K  C  I  Q  *  *  R  G  G  I  F  F  R  E  Y  *  Y  G  R  S  H  G  I  Q  K  T  T  R  H  T  *  F  S  C  K  W  *  G  V  S  K  *  W  G  K  D  K  Y  I  S  W  Y  R  R  R  M  L  C  F  C  L  *  I  *  W  L  S  E  F  C  K  T  C  *  H  *  E  C  G  F  F  P  E  R  M  A  Y  T  K  T  V  R  S  E  N  *  R  C  S  Q  L  Q  K  T  Q  W  L  R  R  W  I  Q  E  K  I  M  N  L  Q  V  K  M  F  I  L  L  F  G  N   </second_frame>
            <third_frame>   F  C  C  S  R  T  M  E  K  V  L  I  C  F  L  Y  I  Y  M  Y  L  *  :  V  R  Q  M  L  I  L  L  L  K  M  L  N  F  D  L  K  *  L  N  V  S  S  D  K  G  E  A  S  F  S  V  S  I  N  M  E  D  H  T  V  Y  K  K  P  Q  G  I  H  N  L  V  A  S  G  E  G  S  A  N  D  G  E  K  I  S  I  S  A  G  T  E  E  E  C  Y  A  S  A  Y  E  S  D  G  Y  Q  N  F  A  R  H  V  D  T  E  S  V  G  F  F  Q  R  G  W  H  I  R  R  R  *  D  L  R  T  K  D  V  V  N  C  R  R  P  N  G  C  G  D  G  F  R  K  K  *  *  I  F  K  *  K  C  S  F  F  S  L  E  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0050I18.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101180" stop="100905"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNVSSDKGEASFSVSINMEDHTVYKKPQGIHNLVASGEGSANDGEKISISAGTEEECYASAYESDGYQNFARHVDTESVGFFQRGWHIRRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 47 chains have been computed
$ 
$ memory statistics:
$ 109040 bytes spliced alignments in total
$ 24 spliced alignments have been stored
$ 4543 bytes was the average size of a spliced alignment
$ 15216 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1690 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 57 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:23:12
-->
