<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 15:07:35"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745040" ref_strand="+" ref_description="SGN-E745040 [GI|83833846]">
      <seq>aaaatctcttgttaattataatttttaatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgtccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="+" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="31642" stop="32385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31942" g_stop="32085" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="+" ref_id="SGN-E745040" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>144</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31942" e_stop="32085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTCTTGTTGATTATAATTGTTTATCATGTCTTAATAATGTTATAATAACCATTTTTAGAAAGTTTGCTACAGAAATATTCCGCGAATAAGTATACCCAGACTATGTCATCCTAAGGTTGAAACCGATAGGCAAAGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTTTTAATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGTCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745037" ref_strand="+" ref_description="SGN-E745037 [GI|83833849]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcctagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="+" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="31642" stop="32385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31942" g_stop="32085" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="+" ref_id="SGN-E745037" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>144</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31942" e_stop="32085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTCTTGTTGATTATAATTGTTTATCATGTCTTAATAATGTTATAATAACCATTTTTAGAAAGTTTGCTACAGAAATATTCCGCGAATAAGTATACCCAGACTATGTCATCCTAAGGTTGAAACCGATAGGCAAAGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCTAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745038" ref_strand="+" ref_description="SGN-E745038 [GI|83833848]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="+" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="31642" stop="32385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31942" g_stop="32085" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="+" ref_id="SGN-E745038" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>144</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31942" e_stop="32085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTCTTGTTGATTATAATTGTTTATCATGTCTTAATAATGTTATAATAACCATTTTTAGAAAGTTTGCTACAGAAATATTCCGCGAATAAGTATACCCAGACTATGTCATCCTAAGGTTGAAACCGATAGGCAAAGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745039" ref_strand="+" ref_description="SGN-E745039 [GI|83833847]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="+" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="31642" stop="32385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31942" g_stop="32085" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="+" ref_id="SGN-E745039" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>144</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31942" e_stop="32085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTCTTGTTGATTATAATTGTTTATCATGTCTTAATAATGTTATAATAACCATTTTTAGAAAGTTTGCTACAGAAATATTCCGCGAATAAGTATACCCAGACTATGTCATCCTAAGGTTGAAACCGATAGGCAAAGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745041" ref_strand="+" ref_description="SGN-E745041 [GI|83833845]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="+" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="31642" stop="32385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31942" g_stop="32085" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="+" ref_id="SGN-E745041" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>144</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31942" e_stop="32085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTCTTGTTGATTATAATTGTTTATCATGTCTTAATAATGTTATAATAACCATTTTTAGAAAGTTTGCTACAGAAATATTCCGCGAATAAGTATACCCAGACTATGTCATCCTAAGGTTGAAACCGATAGGCAAAGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343544" ref_strand="+" ref_description="SGN-E343544 [cTOF-19-D13]">
      <seq>atattatataaaaaaataataaaataaaaagaccatatagaccaaaaagaaaaatattccaatgtacttgttataattgcggaaagataggacatttagctagagattgtaaactacccaaagatccgaaaatgaagcaaattgcagaagtaattatagataatcataaatatatgcaaatagaatacatagactatgaattaagtgaagacgatagtatatatgaagtatcagatatagaaactgaaaatgaagaagaaaatattaatctagataataatgaaacagatgaagaaatataatgtctgaagatgagataaaaataatatctaaagaagattatcaaaatgaagaattatcagactaaaaaattatatttgataatacaatttttgaacaaataaaaggaaaagaattagacttaagtgttgaaaaagtacttgaaatacctactctatgaaattggtttaaaagacaaaaagaagaatattatgtagttagtcaaaaagaacatattatagattgtaaatatgcaagaggaaaaacatatatacctatactaagtaaacgaataataaataaagaaatacaagatataaaagctaaaacaccaataaaatatgtacatttaggaggaacagaaatattaataaaagcttgttttagagaaggaatagatacacctattgaaatatacttagcagatgatagaattatacaccctatagaaaaaagtgtaattagtgcagtaaaaggaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="+" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="34194" stop="35556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34494" g_stop="35256" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="+" ref_id="SGN-E343544" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34494" e_stop="35256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTATGT-AAAAAATTATAAAATGAAAAGACCATATAGACCAAAAAGGAAAATATCCCAATGTACATGTTATAATTGAGGAAAGATAGGACACATAGCTAGAGATTGTACGTTACCAAAAGACCCAAAAAAGAAGCAAATTGCAGAAATAATTATAGATAGTGACAAATATATGCAAATAGAATATATAGACTATGAACTAAGTGAATATGATAGTATATACGAAGTATCAGACATAGAAACAGAAAATGGAGAAGAATATATTAATCTAAATAATGATATAATAGACGAAGAAATATAATGTCTGAAGACTATATAAAAATAATATCCAAAGAAGATTATCAAAATGAAGAGCTATCAGACCAAAAAATTATATTTGATAATACAATTTTTGAACAAATAAAAGGAAAAGAATTAGACTTAAGTGTTGAAAAAGTACTTGAAATACCTACTTTGAGAAATTGGTTTAAAAGACAAAAGGAAGAATATTATGTAGTTAGTCAGAAAGAACATATTATAGATTGTAAATATGCAAGAGGAAAAGCATACATACCTATACTAAGTAAACGAATAATAAATAAAGAAATACAAGATATAAAAGCTAAAACACCTATAAAGTATGTACATTTAGGAGGAACAGAAATATCAATAAAAGCTTGTTTTAGAGAAGGAATAGATACACCTATTGAAATATATACTTAGCAGATGATAGAATTATACACCC-ATAGAAAAAAGCGTAATTAGTGCAGTAAAAGGAAACCTA</genome_strand>
        <mrna_strand>ATATTATATAAAAAAATAATAAAATAAAAAGACCATATAGACCAAAAAGAAAAATATTCCAATGTACTTGTTATAATTGCGGAAAGATAGGACATTTAGCTAGAGATTGTAAACTACCCAAAGATCCGAAAATGAAGCAAATTGCAGAAGTAATTATAGATAATCATAAATATATGCAAATAGAATACATAGACTATGAATTAAGTGAAGACGATAGTATATATGAAGTATCAGATATAGAAACTGAAAATGAAGAAGAAAATATTAATCTAGATAATAATGAAACAGATGAAGAAATATAATGTCTGAAGATGAGATAAAAATAATATCTAAAGAAGATTATCAAAATGAAGAATTATCAGACTAAAAAATTATATTTGATAATACAATTTTTGAACAAATAAAAGGAAAAGAATTAGACTTAAGTGTTGAAAAAGTACTTGAAATACCTACTCTATGAAATTGGTTTAAAAGACAAAAAGAAGAATATTATGTAGTTAGTCAAAAAGAACATATTATAGATTGTAAATATGCAAGAGGAAAAACATATATACCTATACTAAGTAAACGAATAATAAATAAAGAAATACAAGATATAAAAGCTAAAACACCAATAAAATATGTACATTTAGGAGGAACAGAAATATTAATAAAAGCTTGTTTTAGAGAAGGAATAGATACACCTATTG-AA-ATATACTTAGCAGATGATAGAATTATACACCCTATAGAAAAAAGTGTAATTAGTGCAGTAAAAGGAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="+" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="38506" stop="39344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38806" g_stop="39044" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38806" e_stop="39044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCAACACAAGAGGATTAATGGATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGCCCTCATGTGTTAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="+" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="38507" stop="39585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38807" g_stop="39285" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38807" e_stop="39285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCAACACAAGAGGATTAATGGATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGCCCTCATGTGTTAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCATCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTATATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="-" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="39433" stop="38496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39133" g_stop="38822" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="-" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39133" e_stop="38822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTAACACATGAGGGCTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATCCATTAATCCTCTTGTGTTGGTACGTGACACTCCGATCCCCTAAATCT</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207232" ref_strand="+" ref_description="SGN-E207232 [cLEC-30-D20]">
      <seq>ccagaagttacaaggatataacatacttatagcacaacccaaaactagtccaaatttagttaaaacatgttatagctatggactactaaatgcagtatatacatacgacggagaagaaataattggaataccagaattacataaagcatttatgacatataaaagaattactaaaggaaacctattttttataaaattctatacagcaccagcagaaatattatacgaggagataaagtctccaatacaagttataaagataggcctgactagagatatgattataccagaagagatagaaaaacaagctgagataccaaagatagagataccgggcttttatgcgaataaaagaataattggaatagcaacaattgtacaagagttagccaataattatttgaatggcaatgctatttggagttattatgcacgagatcaagtaatgatttattctaattccaaagagctaaggaaatcagatatggatgaagtccagcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="+" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="40142" stop="43245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40442" g_stop="40626" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40627" i_stop="42626" i_length="2000">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42627" g_stop="42945" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="504" r_length="319" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="+" ref_id="SGN-E207232" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40442" e_stop="40626"/>
          <exon e_start="42627" e_stop="42945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAAGTTACAGGGATATAACAAACATATAGCACAACCTAAAACCAGTCCAAATTTAGTTAAAACATGTTATAGCTATGGACTACTAAATACAATATATACATATACCGGAGAAGAAATAATTGAAATACCGGAATTACATAGAGCATTTGTGACATATAAGAGAATTACTAAAGGAAACCTATGTAACGACCTATTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGCTGAGACGACGGAACCCACGACGGATCGTCATGGGCACGACAGACCGTCGAGGGATCTCGTTTCAAAACACTTAGAAGTTCTGAAATTTGGGTACTGAAATCGAGTCTCTGACGAACCTACATGACGGACCGTCGCAGGCGCGACGGGCCGTCACAGGTTGCGTAATCCTAGTCGGAGTCGGATTCTAGTTAAGTTTTAAAGGGGCGTTTTGGACTATTCCTACTATAATTACATATTTCATTGGTTTATATTAATAACTCAATTTCTTGGGGGATAAAAGAGGTAACCTTGAGTTAAATTGTGGGTTATTATTGTCATCTTTTATACTTAATTACATGTTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAATAGAAAGAACAAAAAGAAAGAGAGAGAAGGGAATCGATAGAGAGAGACGCTCGAGAAGGGGAAAAACACAAAGCTTTGGGAAAGTTGCTTGCTTAATCACTAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATATTTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACCAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAATCGACAAGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAAGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCAGGTGTCACGAACCGACACGTAGAATTAGGCGATCGGGTGTCACGAACCGACATGTAGAATTAGGGGATCGGGTGTCACGAACCGACATGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGAGATCAGGTGTCACAAACCGACACGTAGTATTAAGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGAATCGGGTGTCAGGAACCGACACATAGAATTAGGGGATCGAATGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTAAGGGGATCGGAGTGTCACGTACCGACACAAGATAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATAAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACAGTAACTGATTATGACATAGTACTGGTTGTTGCTACATGTTGAGTATCATAGTTGATTTAATGATATTATTTGGTATATATTGATTTTTATTTTGAGTTGGCCGATGATATCTACTCAGTACTTGTGTTTGTACTGACCCCCTACTTTTATGTTTTCTTCTTTGTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAACCGCAACTCTAGCCAGTCTTCATTATTCTGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATTCCTTGAAGTTCCGGCATGGACTAGCTTTTACTTGTTTTAGCTTTTTAGAATACTCTTAGTTTAGTACTTTGATCATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTTTATTGATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACACAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGATTTGGGTCGTGACAAACTATTTCATATAAAATTCTATACAGCACCAGCTGAGATATTATACGAGGATATAAAGTCGCCAATACAAGTTGTAAAGATAGGCCTGACCAGAGATATGATTATACCGGAAGAGATAGAGAAATAAATCGAGATACCAAAGATAGAAATACCAAACTTTTATGCGAATAAAAGAATAATTGGTATAGCAACAATTATACAAGAGTTAGCCAATAATTATTTAAATGGCAATGCTATTTAGAGTTATTATGCAAGAGATCAAGTAATGATTTATTCAAACTCCAAAGAGCTAAGGAAATCAGATATGAATGAAGTCCAGCGATG</genome_strand>
        <mrna_strand>CCAGAAGTTACAAGGATATAACATACTTATAGCACAACCCAAAACTAGTCCAAATTTAGTTAAAACATGTTATAGCTATGGACTACTAAATGCAGTATATACATACGACGGAGAAGAAATAATTGGAATACCAGAATTACATAAAGCATTTATGACATATAAAAGAATTACTAAAGGAAACCTAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTATAAAATTCTATACAGCACCAGCAGAAATATTATACGAGGAGATAAAGTCTCCAATACAAGTTATAAAGATAGGCCTGACTAGAGATATGATTATACCAGAAGAGATAGAAAAACAAGCTGAGATACCAAAGATAGAGATACCGGGCTTTTATGCGAATAAAAGAATAATTGGAATAGCAACAATTGTACAAGAGTTAGCCAATAATTATTTGAATGGCAATGCTATTTGGAGTTATTATGCACGAGATCAAGTAATGATTTATTCTAATTCCAAAGAGCTAAGGAAATCAGATATGGATGAAGTCCAGCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="+" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="40859" stop="41861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41159" g_stop="41562" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41159" e_stop="41562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATATTTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACCAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAATCGACAAGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353715" ref_strand="+" ref_description="SGN-E353715 [cTOS-10-K9]">
      <seq>ggaaaaatttcatgaatatgctatcagatggagggaacaagctgctaggtttaaaccaccgatgaaggagtcagagatgattgacgtttttctccaggcgcaagaacctgattactttctctatctgctttctgccgtagggaagacattcgctgaagttattaaggtaggggaaatggtggaaaatggtatcaagtctggaaagattgtaagtcaggctgccttaaaatccacaacacaagtgcttcaaaatggttctggaaatattgagggaagaagagaagggaggatgtggccactattgtatcagcgcctaggactcatgttctaggtaattccccacaacactattttccttcccaagctccacaatattctatgccatacactccatatcatggttttaatgcacaaccaattgcacccccttcttatccaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="-" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="55520" stop="54477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55220" g_stop="54777" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="-" ref_id="SGN-E353715" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55220" e_stop="54777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATTTTTGTGAATATGCTACCAGATGGAGGGAACAAGCTGCTAGGGTTAAACCACCGATGAAGGAGTCAGAGATGATTGACATTTTTCTCCAGGCGCAAGAACCTGATTACTTTCACTATCTGCTTTCTGCCGTAGGGAAGACATTCGCTGAAGTTATTAAGGTAGGGGAAATGGTGGAAAATGGCATCAAGTCTGGAAAGATTGTAAGTCAAGCTGCCTTAAAAGCCACAACACAAATGCTTCAAAATGGTTCTAGAAATATTGGAGGGAAGAAGAGAAGGGAGGATGTGGGCGCTATTGTATCAGCGCCTAGAACTCATGTCCAAGGTAATTCCTCACAACACTATTTTCCTTCCCAAGCTCCACAATATTCTGTCCCATACACTCCATATCATGTTTTTAATGCACAACCAATTGCACCCCCTTCTTATCCACAATG</genome_strand>
        <mrna_strand>GGAAAAATTTCATGAATATGCTATCAGATGGAGGGAACAAGCTGCTAGGTTTAAACCACCGATGAAGGAGTCAGAGATGATTGACGTTTTTCTCCAGGCGCAAGAACCTGATTACTTTCTCTATCTGCTTTCTGCCGTAGGGAAGACATTCGCTGAAGTTATTAAGGTAGGGGAAATGGTGGAAAATGGTATCAAGTCTGGAAAGATTGTAAGTCAGGCTGCCTTAAAATCCACAACACAAGTGCTTCAAAATGGTTCTGGAAATATT-GAGGGAAGAAGAGAAGGGAGGATGTGGCCACTATTGTATCAGCGCCTAGGACTCATGTTCTAGGTAATTCCCCACAACACTATTTTCCTTCCCAAGCTCCACAATATTCTATGCCATACACTCCATATCATGGTTTTAATGCACAACCAATTGCACCCCCTTCTTATCCACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274122" ref_strand="+" ref_description="SGN-E274122 [cLEN-8-M5]">
      <seq>tatgataagtaatccactctttgtgtcaactgccccgactaacaacatcctgtagacaatgatggtgcccaaatccaacagcgatcctctgcccaaagttcggcttgatcacagttacactcttgaagaggccattaaaattccaagctctcatcccaacattcatcaatatggttaccctgtcaaaattgagaagatggtcaagaatgaggaacatgaagaaatgactaagaaaatgaagagttctgaacagagtataagagatatgaaaggaccaagaggccacaaaggcatctcgttcagtgacttgtgtatgtttccctcacgtccatttgcctgctggttttaaaattccaaagtttgaaaaatacgatggtcacggagacctcatagctcatctaaagatatattgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="-" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="56147" stop="55133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55847" g_stop="55433" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="-" ref_id="SGN-E274122" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55847" e_stop="55433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATAAGTAATCCACTTTTCGTGTCAATTGCCCCGACTAACAGCATCCCGCAGCCAACGATGATGCCCAAATCCAACAGCGATCCTCCGCCCAAAGTTCGGCGTGAGCAGAGTTACACTCTTGAAGAGACCATTAAAATTCCAAGTTCTCATCCCCACATTCATCAATATAGTTCCCCTGTTGAAATTGAGAGGATGGTCAAGAATGAGGAACATGAAGAAATGACTAAGAAAATGAAGAGTTTGGAACAGAGTATAAGAGATATGCAAGGACTAGGAGGCCACAAAGGCATCTCGTTCAGTGACTTGTGTATGTTT-CCTCACGTCCATTTGCCTGCTGGTTTTAAAACTCCAAAGTTTGAAAAATACGATGGTCACGGAGACCCCATAGCTCATCTAAAGAGATATTGCAAC</genome_strand>
        <mrna_strand>TATGATAAGTAATCCACTCTTTGTGTCAACTGCCCCGACTAACAACATCCTGTAGACAATGATGGTGCCCAAATCCAACAGCGATCCTCTGCCCAAAGTTCGGCTTGATCACAGTTACACTCTTGAAGAGGCCATTAAAATTCCAAGCTCTCATCCCAACATTCATCAATATGGTTACCCTGTCAAAATTGAGAAGATGGTCAAGAATGAGGAACATGAAGAAATGACTAAGAAAATGAAGAGTTCTGAACAGAGTATAAGAGATATGAAAGGACCAAGAGGCCACAAAGGCATCTCGTTCAGTGACTTGTGTATGTTTCCCTCACGTCCATTTGCCTGCTGGTTTTAAAATTCCAAAGTTTGAAAAATACGATGGTCACGGAGACCTCATAGCTCATCTAAAGATATATTGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="-" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="75103" stop="72382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74803" g_stop="74325" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74803" e_stop="74325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCAACACAAGAGGAATAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCCTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGGGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTGCTTGTTGATGCTACATGTTGGGTATCATAGTTGAGTTTATGATATTACTTGG--TATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTT-TTTATTTGTGGAGTGCAGCAAACGTGTCGTCGTCTTCGACTCAACAGTAATTCTAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATG-TTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACT-ACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="-" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="75104" stop="74267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74804" g_stop="74567" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74804" e_stop="74567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCAACACAAGAGGAATAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCCTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGGGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTGCTTGTTGAT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352189" ref_strand="+" ref_description="SGN-E352189 [cTOS-13-M22]">
      <seq>aattgttcttataaacgttttaaaaattagtgtgataggttttttattttatttttgcatattttttaaggtttttttcatgaattttcatgggggaaggtggaataagtggtagggctaaaaagtgaagaagaaggaaaaaattggaaaaaaatccaaaaaaaaaaccccatgcgctcaaaatgggtacaacacacacaatatgtcaagttagcacaaagtgtcaaaatgatacagtggaactcaacatgaggtgtctaaaatgaacaaagtttaattgaggtgcctaaatgaaaattgatggcaactttagagggctgccaatgggctgagcctgccttttttaatcgaagatattaacaaattcacatagacattccacaagaaatacgggtgggaacatgagagtcatccaagaaaaaatatgcatattgaatggatgataaagagcaaatatggaaaataatgttgatgaaagtaaaaatgaccctttttgtaaaataaatggacaattatgttcgttttccatataaaatgtatagtgtatatttatttgagatgagaaaattaaaggaggaaggtggacaagtgaagaatgaaggtgttattttccatagcagatgaaaaagaataatataaagaattagtattacaagttaattaattaagtccaaaaagttcaaagtaaatttgcatgaaaaacttgtcaacaatttcaacataagtggtgcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="-" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="78674" stop="77340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78374" g_stop="77640" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="-" ref_id="SGN-E352189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78374" e_stop="77640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTTCTTATAAACGTTTTAAAAATTAGTGTGATAGGTTTTTTATTTTATTTTTGCATATTTTTTAAGGTTTTTTTCATGAATTTTCATGGGGGAAGGTGGAATAAGTGGTAGGGCTAAAAAGTGAAGAAGAAGGAAAAAATTGGAAAAAAATCCAAAAAAAAAACCCCATGCGCTCAAAATGGGTACAACACACACAATATGTCAAGTTAGCACAAAGTGTCAAAATGATACAGTGGAACTCAACATGAGGTGTCTAAAATGAACAAAGTTTAATTGAGGTGCCTAAATGAAAATTGATGGCAACTTTAGAGGGCTGCCAATGGGCTGAGCCTGCCTTTTTTAATCGAAGATATTAACAAATTCACATAGACATTCCACAAGAAATACGGGTGGGAACATGAGAGTCATCCAAGAAAAAATATGCATATTGAATGGATGATAAAGAGCAAATATGGAAAATAATGTTGATGAAAGTAAAAATGACCCTTTTTGTAAAATAAATGGACAATTATGTTCGTTTTCCATATAAAATGTATAGTGTATATTTATTTGAGATGAGAAAATTAAAGGAGGAAGGTGGACAAGTGAAGAATGAAGGTGTTATTTTCCATAGCAGATGAAAAAGAATAATATAAAGAATTAGTATTACAAGTTAATTAATTAAGTCCAAAAAGTTCAAAGTAAATTTGCATGAAAAACTTGTCAACAATTTCAACATAAGTGGTGCATGT</genome_strand>
        <mrna_strand>AATTGTTCTTATAAACGTTTTAAAAATTAGTGTGATAGGTTTTTTATTTTATTTTTGCATATTTTTTAAGGTTTTTTTCATGAATTTTCATGGGGGAAGGTGGAATAAGTGGTAGGGCTAAAAAGTGAAGAAGAAGGAAAAAATTGGAAAAAAATCCAAAAAAAAAACCCCATGCGCTCAAAATGGGTACAACACACACAATATGTCAAGTTAGCACAAAGTGTCAAAATGATACAGTGGAACTCAACATGAGGTGTCTAAAATGAACAAAGTTTAATTGAGGTGCCTAAATGAAAATTGATGGCAACTTTAGAGGGCTGCCAATGGGCTGAGCCTGCCTTTTTTAATCGAAGATATTAACAAATTCACATAGACATTCCACAAGAAATACGGGTGGGAACATGAGAGTCATCCAAGAAAAAATATGCATATTGAATGGATGATAAAGAGCAAATATGGAAAATAATGTTGATGAAAGTAAAAATGACCCTTTTTGTAAAATAAATGGACAATTATGTTCGTTTTCCATATAAAATGTATAGTGTATATTTATTTGAGATGAGAAAATTAAAGGAGGAAGGTGGACAAGTGAAGAATGAAGGTGTTATTTTCCATAGCAGATGAAAAAGAATAATATAAAGAATTAGTATTACAAGTTAATTAATTAAGTCCAAAAAGTTCAAAGTAAATTTGCATGAAAAACTTGTCAACAATTTCAACATAAGTGGTGCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392417" ref_strand="+" ref_description="SGN-E392417 [TUS-34-O23](-)">
      <seq>gagaaaactgaaatccagcaaaagtcgcgtccaacagtacgccttctctttcatttttctcaaattcggccggctccagctccaaacggcgccaacagtacgcctgcaataaccgcgtcccgtccccttttctcccccttttgcgaagttttcagataagggaatgactcccctttccttttactgttgatctcgaaaaggagcaaagaaaaaattcaatctcctctttaaaaaagtccaacggatttcccccatcaaatttgatctcaattttctgtaaatagtctcttcttcactgtgctgaggaagggggcaagcatagtaagaggttttttgtttttagtgtttgaattcctgagcaatagtcatttctacacttcaaaattttcgaattttcttagcttgccgttagtagttgaagggagtggtggaattactcttctcgtcgtcctagtatcgttgctccgagaaaggttggagccgagttgaagggtagaaggcaagtttgggaatcgactctctcaagactaaatatgtcctcatatattcgaaggcatagtctttgtttctttagtttcttcttttaaggcttgttaagatttattatgtatttatttcaatgtgaaaaggttgtgtccctaagatatttatgtcttgtctttaagttggcttgtgatgacgagacatatttcttagcttttataaaaaaagtttcttattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="-" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="97537" stop="87476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97237" g_stop="96765" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96764" i_stop="88024" i_length="8741">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88023" g_stop="87777" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="720" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="721" polyA_stop="731"/>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="-" ref_id="SGN-E392417" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97237" e_stop="96765"/>
          <exon e_start="88023" e_stop="87777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAACTGAAATCCAGCAAAAGTCGCGTCCAACAGTACGCCCTCTCTTTCATTTTTCTCAAATTCGGCCGGCTCCAGCTCCAAACGGCGCCAACAGTACGCCTGCAATAACCGCGTCCCGTCCCCTTTTCTCCCCCTTTTGCGAAGTTTTCAGATAAGGGAATGACTCCCCTTTCCTTTTACTGTTGATCTCGAAAAGGAGCAAAGAAAAAATTCAATCTCCTCTTTAAAAAAGTCCAACGGATTTCCCCCATCAAATTTGATCTCAATTTTCTGTAAATAGTCTCTTCTTCACTGTGCTGAGGAAGGGGGCAAGCATAGTAAGAGGTTTTTTGTTTTTAGTGTTTGAATTCCTGAGCAATAGTCATTTCTACACTTCAAAATTTTCGAATTTTCTTAGCTTGCCGTTAGTAGTTGAAGGGAGTGGTGGAATTACTCTTCTCGTCGTCCTAGTATCGTTGCTCCGAGAAAGGTGATGTCCTTATTCCTACCTCTCGTTTTCCTTTCAAATGATGTATGTTCTATTTTGTTTTCTGCCTAAAGGATTATTCTTTTGGACAGTTCATTGTTGGTTTGTTTTTAGATGATATAGTATTTTGAGTTGTTTGTTGACAAAATATTACTAATTAAGATTGACTTTTTTCTTATATTGCTATAGCTCATGTATTGTGATTTGAAGCTAGTTCATCAAGCTATTTCTCACTGATTGTTTCACAGTTCATTCTTTCTTAAAAACAAAAAAATAAAACAAAATTGAACTTTGTGGCTTTGTGATTTAAGCTTTATCCTTTTTTCTTGTTGGCATGATCAATAGTTCTTGTCGTCTTAGCAATCAAATGTAGCTAAAATAGTGTTAATCCTTCCAAATGGTTAGTCTCATAGTTCTGGTTTTTTCTTGGTTTAAACTCGTTTTGGTCTTAACAGGTTGCTATCATGTTTTTGTTGTACGCCTAAAGCTGCCGAGTCAAACATATTGTCGTGCTTGACTTGTCCTACCCAAACATCCGTCCCTCTGTTTTTTGTTGTGGGCTGTTACTTGTTATTGTCTTTAAATCATTGAAATCTCAGAATCCGCAAAAGTGGCAGTTGTATGTCGTTTATTATGTTTTATAGATTTGATGATCACCTTCCCTCTTCATCTAAGTCTTGTTACCATCTTATGGTCCAATGTGCCATGTTAGAATTGAGTTTATGTCTCTATTTCATTTAGATTCTCGTCAAAAATATTTGCTACTAGTAGTGGACTTAAGGCCAAGGAAGAGATTTTGCTGCCTTCCAAACCTTGGCTTGTTCCAGCACTCGCTTTCCTTTAACCAAATGCCCATCTGTGAGCTTTTGAATTAGACGTCTAGCATTTGGTTTAATTTAGATTATTAGATTGCCAAATGCGATATTTGTTTAAATATGTGCTAAGTCTTTATCAATCCAGGTGTCTGAGCTTTACTTGAACTATGTATCTGATTTGTTTTCTAGAATATGCAATTTTTTACACCTACTGGTGTATCTCTTTTGTGTTATTAGAAATCTGCAAATTACCATTTGTTTTATTTTTCGTGCGTACATGTATGTGACTTCAAATTTCTCTAGGCTTAGACTTTGATAGTTTAGTGTTATAAATTCATTTCTTCCATCCATGTTATAATGTTCTCCATGTTTAGTTTCTTAGTACTGTTAAAAATAAAAGGAACCACAATTGTTTGTTTGATACAATAGCTGATCATTTCTTTTTCAAAGGCCATGGATGAATTAGTCAACACTGACTTCGTTCAGTTATATATGCAAGCATGCTTAGTTTCTTAGTACTGTTAAAATTAGAAGGAACCATAATTGTTTGTTTGATACAATAGCTATTCATTTCTTTTTCAAAGGCCATGGATGAATTAGTCAACAGTGACTTTGTTCAATGATATAGCAAGCATGTTGTCAGTGTTTCCACGAAATGCAAGAAATGTTCTTTTCATTTTTTGAATACCATCACTGTTGTTCCCTCTCTTCTTTGATGTTGTCATAATTTGAAAAATGTCATATTGCATATTTATCACAGCCGCAAACATCAATCTTTGTCCTTCTTTTCTTGCATGAATTCCCTCGGTTTGAGTCCATTGGACTCCCTTTGTTACTCTCCTTGCATCTCGGGTTGGGTAGAAACCCAATGATTCCTCCATCGAGTCAGCAACCTTTCTATATGAGCGTGGAAATGAAAACAGGTTTGGGAAGTCCAAAATGGGCAGTACGCATGCTATATACATCAGTATACACTAGTATACACCACGGAAATATTGATATGCAGGTCAAAATGCAACAAATACTAGTAAAAAACGAAGATACAGGTTGGAGGCGTCAAGGTGGACTGTATACAGTCGATATATGGGTTGGTATGTAGGTCAAAATGCAACAAATACTAGGTAGAAACGAAGATACTGGGTGGAGGCATCAAGGTGGACTGTATACAGTCGATGTATGGGTTAATATGTAGGAAATGATGCTGATATGCGAGCTGTATACACTGATATACAGTTTGTGTATACAAAAATGGGTTTTGGGTTAAACCCGAAAAGTAGTAGCAAATTTGGCCAAGAAAAGCCCAAATTCATCTTCTCCTTTATTTCTCTTAGCTTACTTAATTGTGACTATTTATTGCTTTGTGTTTTTGGTTAACTCTAACTTTAAATAACTTACTTAAATTTTTAAAAGATGAACTGTATTTTTTATGTTGGTTTATTTTGATATAGTTTACTTTTATCAACTCTTACATTTTTATTCAATATATTTAACCAAAACCTTTTATTTATTTTTCAAATAATTTAAAATGATTTTCATGCTCAAATTAACTAGTTTAAATTATTTTTTTACAAATGAGTCAAGTAAATTTAATAAATTTTAGTTTTATTAAAATTCTAGTCACTTGCATTTCAATTCAAATGCTTCAACTAAGTACCAATTTTATATTCTTTTAACTATTTTCTCAAGTTAATCAAATATTTTAAATTAATATAATTATGTTCGTATCAATCATTTTCCTAAAAAATAGTCAAAAAAATTTTAACCTAAGTCGTACGATAATTGCATGTTAGCGGACGTTTCAAATACCTTAAAAACCTTCTTGAAGCGTAAATAAAAATCTCTTACCCATTTTCTCTAAATTTATTAAGATTTAGTCTGTTAAAATCTTTTTAAGTTAAGTTTTCTTAATTTCTTTTTTTAAAAAAAATAAGTGGGGATCTGCTCGTGGAATAGAAAAAGTTTGTTGCATCAACAAAGTGTATTAGTCAAAAAGGCTTACTTAAGCTAATCGATGTGTATTCCTAGGCTGTGAAAGAGAGGGCGGACCATTGAATTAGAACATCCATATCTTGTTCTAAAAGTTGTCTTTGAAATATTATATTCTCTAACTTTCAACTGATGGTAGCATGATCTAAGATCAATTTTTGAGAAGTAGGAAGCAAAGGTGGTCGAAAAGACCATCAATCCTTCGAATATGATATTTATTCTTGATAAACCTTGTTCAATTGGTGGTAATCTATACACATTCTAAGGGAACCATCTTTTTTTTCTCACAATTAAGACAGGAGCACCCCAAGGTGAGACACTTGGTCGAATGAAACCCTTGTCTAACAAATCTTTCAACTGTTCTTTCAACTCTTTCAAATCTGATGGTGCCATTATATATGGCGGAATAGAGATAGGACGAATATATGGAATAATGTCTGTCGAAGTCTATTTATCTCTTCAGGAGGGACTTCGGGTAGATCATCAAGAAAGACTTATGAAAACTCTTTTATTATAGAAATTGACTAAATGGGAGGTACCTCAACACTTGAGTCATTACTCAGACTAAGTGATAAATACAACACTTAAAAACTAACTTTCTTTCCTTGAGGTACGAAATGGAATGACCCATAGGCACTGCTGAAATGATTTTCCACTCTATAACTGGTTCACTAGAAAACTGGAGCTTGACTACTTGAGTGCTTATCTATTGATGCATAATAGGCATTATGTCAGTCCATACCTAGAATGACATCAAACTCTACCATGTCTAACTATACTAAGTCATCCATGATATTCTTGTGATTTATGAGAAATGGTACAATTATGATTGACTCTTTCAGCTAGAAAAGAATTCTCAAGATAAGTAAAAACACTAAAGGGATCATAAAGTTACTCATGAAAAACATCAAAACTGAAGACTTGGATCATGTGACAATATCTGGGGAATCCTATTGCTCTCAGTGACTAGTGATAGCATAAAAATGGTTTCCTTCTCCGTCTACACCTGAAGTAGCTTATCCAGATGCAACTCTTATTTGGTGAAGAAACTGAAGTGTACTGGGTTGTATTGCCCTCTTTATCATTTCTTTGTCTGTACTTAGGAAATTCTCTTATAAAATCCCAATTTTGGCTACATTTTAAGCAATCAATGAATCCATCACGACACACCCCTGAATGACTTCTACCACAGTGGGAACATGCAAGAGTCTAAGTACCACCTTGCAGTAAGCTGGTCTAGATCTATCAATTTTGAGAATCTTGAGTATTGTACACACAATGGTTCCTTGATGCAGGTGCACTAGAAGATGAAAAAATAGATCCTTTCAATTTACGTTAGAAAGAAGACCAGTTCACGTACCTTTTTTTTTTACCCAAACTCATTCCTTGATGTGTTATCCCTCAGCTTGTCCTCCTCAACTTGTTGAACATGGATCATTAGCCTTGCTATGCTCATGACAGCTACTAGTATGGTTGTCCTACTTTCCTTGCTTGATAGACGAGGCAACCCAATAACAACAAAGCTCATTTTAGTCCTCATGTCGACAACAATATCTTAGTTTTTCTTAGATCATATAAAAAAGAAACGCCTCAAAAAGGCGGCCTCAACAATTACCAGCTCAGAAACGCCTCTAACGCACGAAAAGAGTGTGAAAAAAGTGAGATAGTTCTTATATGTTGCAGCCTCCTTGTTAGGACCCTCAAAACGATCTAGGATAATCTAGAGTTCCAGATGTGCCTTAAGAGTTTATAACTCCTTTACAAGGCGTGTAACAGCTTGTAATGGTTGGTTTGATGAGGTTTGAGGTCCAACGTCAAAGAACGACCAAGACGTCTGAAAACTAGTCGTTTGTATAGCTAGTGTGCCTTTGTATGTTTGTCTTGTGTTGGAGTGTTGTTTGAAGTCTAAAATGATAGGGGGTATCCTAATAAGCATATGGTTGTGTTTAGGATCGAAACGTTTGGGCACAACTCCCCAAGAACCACCCTCACAGTCCTTGGGGAGGACCCAAAGGTTGGCAAAAATCGGCCAAGGAAATGTCACCACGACTATGATCGATGACTAGTGGTTTGAATGATGCCCTGTCGTTAGGGGGGCGTCTCCACTTAGTTGGGAGCTTAGCCCCCAAATGAGGGAATTTTTATCACAAACGATGAAGTGCAGGATTGTAACACTTCGGAAGTCTAAGACGTATTCTAGAGCCTAACATGAGTGTCACAGGGTTTAGATATTGTTTTAAGGTTAATTTTAATGTACATAAATCATTTAGGAAGTCTAGGAATCAAAACGTCGAAGAATGTCCATGACGTCTGGAAACTAGTTCAATGAGGTGTTAGTGTGCCTTATCATATTTGACATGCTTTTTGGAGTCAAAAAATGATGAAAATTGGTGGAAGGGTATCTAATACATGTTAGAGTTAGTTCATAGTCAAAATGTTTGGGCACAACTCCCCAAGGACCAATCAAGGGCCCTTGAGGAGAACCCTTGCGATTTGGCAAGAGGCTGCCAAAAGGCAGTGTTCATAGACGGTTGTCATCAACGAATCGTGTGTCAATCATCTGGGGGTCGATTGCCTATGTTGACGGACACTTAGAAAAATTGTCTAAGGCCTGTTTTGGACTAGTCTCTGAACTCAACAACGAACCAACATGACAGTTGGTCCTTGGCCTGTCGATTGACAAATAGGGCATCGGTCGGGGTTCCGTCTGTGAGGTTTGTGTTTTGCTGCACGTTTTGACTTGATTCATTTAATTAGTTGGCTTAGTTAGGAGGTTAATTAGGGGTTAGGGGAGGTCTAATTAAATTTGTTAATGACCTATATAAAGACCCTAAGATAATTAGACTAACCTAAGATCTCATAATTCTCAAACCCAAAACTCTCTTCTTTCTCTCTCCCAAACAAACCCCATTGAATACCAAGTTAGAGGTGGGTTCAAGGGCTGCAAAGGGTCAAGTTTCTCCATCAATCTTCATCAAAAACTAAGGTATGAGATTCCTTTCACCTTTGAGACTTCTTTCCTCAAAGGGTTCCATCAAATTGATTTCCAAAATATGACGGATCCCCACTTGCCTAAGGTAGGGTCCTTCTTGAGACATCACATGGGGTTTCCAATAACTACTCCTATGCGGACACATAGTTAAGGTATAAGGAGATTTCTTCTAAGTGACTCATTTATCTTCTAACGAGGAGCATTTATAACAACCCAAAAAAATGAAATGGGTCAAACTAGAGCTTAACATGTGTTCCATGAGTTAACAGTGTATTAAAATATTTAATTTTAGCATTAGAAGTTAGTTCGTAAAGTTTGGGATCATTTGGAAGTCAAACGCCTAAGACGTTCGAAAACTAGTTGAAGTTGAACTAGTGTGTCGTCGTGTTTTTGGTGAAGTTTTGGGGGATGGTTTGAGAGTGATATTGAGTGTCAATGGTTCCTATGTATAGAGGGATGTAACAAGTGTCAAAACGTCCGAGTACAACTCCTCGGGGACCACTCAAAGGGCCCCCAAGGAGGACCCAAACATGGGTCAAGATGCTGCCCAAGGCAGCGTACAGGGGCAGGATATGAAGCCCAACCTTGCGACGTTCCCTTGACACGAGGTCTACTTCCTCAGAATTTTTGAAAGGCAAAAATCAAGATCTTGCCTCGCGATGCGCAGCCAAGTCCCAGATTTGGCCGCGACGTTTTTAAGTAAAATTTCAAGTTTGGAAAGGGTCCAAATGGTGTGGGTGTATTTTGGGGACTTTGGGGATCATTTGTGTACTGATTTAGGCAATTTTAAACCTAATTTCACCTATCATTTCCAACCCTAAAGATCAAATTAAATTTCTCCAAAACCTTCTCTCCAAAAACCTCCATTGAAGAAGCTTCAAGCTCCAAGGAAGAGGACCAACTTCTTCACGTTTTCTTCACCAAATTTTTGTGGGTTTATTCATATTAAGGTATAGTAGTCATCCTTGAACCTTCTTTCATTCAAGGAGCCACTTCAAAGAGATTTCAAAAAGGATTTCAACTTGAAACTTCTTTATTCCTTGACTCTAAGTATGGGTCTTTGCATGAAAATGTTTTATTGATTAAAATGAGTTTTCCTAGTTATAAATGATGATTTTAATGAGAAAACCCCAATGGAATCATGTCTGGATTATGAAATGGGTTCTATGATCATGAGTAGATAATGTTAAAGTTATTGTTTCTTGGTGTTTTTATTGAGTTTTAGATGTTGCCCTAAAGGGGGCTATTTTATGATGGATTATCGGATAAATTGTGTATAGGTGGTGAAATCTTGGATGAATGGTAAGTTGGCTATGCTTTTTAATCCTTATTTTTTAATTAACTCTTGAGTGGTATGGTCAAACTTTGGAGGTGGTGTTTACTTGAAATATATGAAGTTATATGTGTATTGTGAGAATGACCTTGGAAGCATCATATGTGAAGTGAAATGATAATTTTGATATGTATATGTATGATGATGTGTAAATTATGATAAATGTGAGTTGAGCATGTCTAGAATTCAATGTTATGAATAGTGGTCATTATGTGAAAGATGTGCTCACATGTGGTCACAGACACACTTGAATGCATGAATAAAGTCAATGAATGAAAATGGGGGATTGTAGGGTGAACACTCTTTGTGAGTAGAGATGAAGAGTCTAGACCATCCCTACTATTCCTAAGTATGAAAAAGGGGTATTTTGGGGTGAACACTCTTTGTGAGTAGAGATGAAGTGTTTAGTAGAAACCTCATTATTCCTAATGAACTTTCCAAGATAGGTCGGAGGTTGGATACCCTTCGTGAGTTGAAATGGGGTGTTCAATAGTTATCTCCTAACCTATAGTCAATGAATGTTTAAGACTCCATGGGGAGTTATGCTTAGCACCGAGAGTATTTGAAGAAGGGGTGGGTACACTTCGTGAGTAAAGAGGTTCTGTTCAATGTACCTCTTGATATATGTGCTTCTCATTAGTAGAGAGTGAGTTACCTAGTAACAATCTTTTTATACCTTAAATATGTGTCTGCGCAGGTGTAGGTATTGGAGAACCCATGTAAAAGCTAAAGAATATGACCCTGCCTTAGGCAAGTAGGGATCCCTCATCCGATTAGGATATACCGGGATTCCATGTCAAGCTCTCATCGTCTATGTCGGTTAAAGCTATCCCCCACAAATGTATCCAAATGAACTAAGTCTTCTTAAGGGTGTACTACTTAGGGTAGAAGGTGGAATGAGACGCTACATATCCATTGCACAAGTATGCATTTGGAGGGAGTCTTGGTATGTCCTTATATGAAATGTATGAATGGGTCATGATATGATGTAAATGAAAGTAATGTGACTTATGTTAAATGTTAAGAAAGCATGTTGATGTTAAGACTTGTATGATGAAAGCTTAGTATGTGATGAATGTGATGTGCCTATTCTAAGGTTATTCCTAAGGAGCATTAAGTGGAAGTGGTAGTATGGGATGATGCTTTCACATTGCACCAAGTGTAAATTGGGGGTTTCCTTGGAAGATGGTTCTTATGTGAAGTTCCTAAGTGTATGTATGTTTCTATAGTGCCTTTAGTATTGAATGTTGACTTGCTAAGTGAAATGAAGTATGATTGTCCTTGGTAGTCTTAAGGATCACTTGGGTGTGTGGTGAAGAGATTGTATGAGCAATCTCCTCATGTCTTAACTAAGCGGGTCTTAGGATAACTTGGGATAGGAAGAATTATGTGTTAAGTGGGTTCACTGTAAGTATGCTTTTATGTTGAGAAAAATGGATGTTTTACTTTATGTGCTAATGATGGTTTTAAATGATGTCTTGTAACTTAATTCATGAAGCTTTTTACCAAAATAGCATGACTTGTATGTTTATACTAAATGTCCCTTTTTGCATGATTTTTCATATGTCATACTTAGTAAATTGTTTGTACTAACCCCATACTCTTCTATACTTTATAGGTTGGAGCCGAGTTGAAGGGTAGAAGGCAAGTTTGGGAATCGACTCTCTCAAGACTAAATATGTCCTCATATATTCGAAGGCATAGTCTTTGTTTCTTTAGTTTCTTCTTTTAAGGCTTGTTAAGATTTATTATGTATTTATTTCAATGTGAAAAGGTTGTGTCCCTAAGATATTTATGTCTTGTCTTTAAGTTGGCTTGTGATGACGAGACATATTTCTTAGCTTTTATAAAAAAAGTTTCTTATT</genome_strand>
        <mrna_strand>GAGAAAACTGAAATCCAGCAAAAGTCGCGTCCAACAGTACGCCTTCTCTTTCATTTTTCTCAAATTCGGCCGGCTCCAGCTCCAAACGGCGCCAACAGTACGCCTGCAATAACCGCGTCCCGTCCCCTTTTCTCCCCCTTTTGCGAAGTTTTCAGATAAGGGAATGACTCCCCTTTCCTTTTACTGTTGATCTCGAAAAGGAGCAAAGAAAAAATTCAATCTCCTCTTTAAAAAAGTCCAACGGATTTCCCCCATCAAATTTGATCTCAATTTTCTGTAAATAGTCTCTTCTTCACTGTGCTGAGGAAGGGGGCAAGCATAGTAAGAGGTTTTTTGTTTTTAGTGTTTGAATTCCTGAGCAATAGTCATTTCTACACTTCAAAATTTTCGAATTTTCTTAGCTTGCCGTTAGTAGTTGAAGGGAGTGGTGGAATTACTCTTCTCGTCGTCCTAGTATCGTTGCTCCGAGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGCCGAGTTGAAGGGTAGAAGGCAAGTTTGGGAATCGACTCTCTCAAGACTAAATATGTCCTCATATATTCGAAGGCATAGTCTTTGTTTCTTTAGTTTCTTCTTTTAAGGCTTGTTAAGATTTATTATGTATTTATTTCAATGTGAAAAGGTTGTGTCCCTAAGATATTTATGTCTTGTCTTTAAGTTGGCTTGTGATGACGAGACATATTTCTTAGCTTTTATAAAAAAAGTTTCTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395015" ref_strand="+" ref_description="SGN-E395015 [TUS-34-O24](-)">
      <seq>tttttttcatttttttcaaatttgggcgggctccagctccaaacggcgccaacagtacgcctgcaataaccgcgtcccgtccccttttctcccccttttgcgaagttttcagataagggaatgactcccctttccttttactgttgatctcgaaaaggagcaaagaaaaaattcaatctcctctttaaaaaagtccaacggatttcccccatcaaatttgatctcaattttctgtaaatagtctcttcttcactgtgctgaggaagggggcaagcatagtaagaggttttttgtttttagtgtttgaattcctgagcaatagtcatttctacacttcaaaattttcgaattttcttagcttgccgttagtagttgaagggagtggtggaattactcttctcgtcgtcctagtatcgttgctccgagaaaggttggagccgagttgaagggtagaaggcaagtttgggaatcgactctctcaagactaaatatgtcctcatatattcgaaggcatagtctttgtttctttagtttcttcttttaaggcttgttaagatttattatgtatttatttcaatgtgaaaaggttgtgtccctaagatatttatgtcttgtctttaagttggcttgtgatgacgagacatatttcttagcttttataaaaaaagtttcttattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="-" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="97493" stop="87476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97193" g_stop="96765" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96764" i_stop="88024" i_length="8741">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88023" g_stop="87777" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="677" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="678" polyA_stop="688"/>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="-" ref_id="SGN-E395015" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97193" e_stop="96765"/>
          <exon e_start="88023" e_stop="87777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTCATTTTTCTCAAA-TTCGGCCGGCTCCAGCTCCAAACGGCGCCAACAGTACGCCTGCAATAACCGCGTCCCGTCCCCTTTTCTCCCCCTTTTGCGAAGTTTTCAGATAAGGGAATGACTCCCCTTTCCTTTTACTGTTGATCTCGAAAAGGAGCAAAGAAAAAATTCAATCTCCTCTTTAAAAAAGTCCAACGGATTTCCCCCATCAAATTTGATCTCAATTTTCTGTAAATAGTCTCTTCTTCACTGTGCTGAGGAAGGGGGCAAGCATAGTAAGAGGTTTTTTGTTTTTAGTGTTTGAATTCCTGAGCAATAGTCATTTCTACACTTCAAAATTTTCGAATTTTCTTAGCTTGCCGTTAGTAGTTGAAGGGAGTGGTGGAATTACTCTTCTCGTCGTCCTAGTATCGTTGCTCCGAGAAAGGTGATGTCCTTATTCCTACCTCTCGTTTTCCTTTCAAATGATGTATGTTCTATTTTGTTTTCTGCCTAAAGGATTATTCTTTTGGACAGTTCATTGTTGGTTTGTTTTTAGATGATATAGTATTTTGAGTTGTTTGTTGACAAAATATTACTAATTAAGATTGACTTTTTTCTTATATTGCTATAGCTCATGTATTGTGATTTGAAGCTAGTTCATCAAGCTATTTCTCACTGATTGTTTCACAGTTCATTCTTTCTTAAAAACAAAAAAATAAAACAAAATTGAACTTTGTGGCTTTGTGATTTAAGCTTTATCCTTTTTTCTTGTTGGCATGATCAATAGTTCTTGTCGTCTTAGCAATCAAATGTAGCTAAAATAGTGTTAATCCTTCCAAATGGTTAGTCTCATAGTTCTGGTTTTTTCTTGGTTTAAACTCGTTTTGGTCTTAACAGGTTGCTATCATGTTTTTGTTGTACGCCTAAAGCTGCCGAGTCAAACATATTGTCGTGCTTGACTTGTCCTACCCAAACATCCGTCCCTCTGTTTTTTGTTGTGGGCTGTTACTTGTTATTGTCTTTAAATCATTGAAATCTCAGAATCCGCAAAAGTGGCAGTTGTATGTCGTTTATTATGTTTTATAGATTTGATGATCACCTTCCCTCTTCATCTAAGTCTTGTTACCATCTTATGGTCCAATGTGCCATGTTAGAATTGAGTTTATGTCTCTATTTCATTTAGATTCTCGTCAAAAATATTTGCTACTAGTAGTGGACTTAAGGCCAAGGAAGAGATTTTGCTGCCTTCCAAACCTTGGCTTGTTCCAGCACTCGCTTTCCTTTAACCAAATGCCCATCTGTGAGCTTTTGAATTAGACGTCTAGCATTTGGTTTAATTTAGATTATTAGATTGCCAAATGCGATATTTGTTTAAATATGTGCTAAGTCTTTATCAATCCAGGTGTCTGAGCTTTACTTGAACTATGTATCTGATTTGTTTTCTAGAATATGCAATTTTTTACACCTACTGGTGTATCTCTTTTGTGTTATTAGAAATCTGCAAATTACCATTTGTTTTATTTTTCGTGCGTACATGTATGTGACTTCAAATTTCTCTAGGCTTAGACTTTGATAGTTTAGTGTTATAAATTCATTTCTTCCATCCATGTTATAATGTTCTCCATGTTTAGTTTCTTAGTACTGTTAAAAATAAAAGGAACCACAATTGTTTGTTTGATACAATAGCTGATCATTTCTTTTTCAAAGGCCATGGATGAATTAGTCAACACTGACTTCGTTCAGTTATATATGCAAGCATGCTTAGTTTCTTAGTACTGTTAAAATTAGAAGGAACCATAATTGTTTGTTTGATACAATAGCTATTCATTTCTTTTTCAAAGGCCATGGATGAATTAGTCAACAGTGACTTTGTTCAATGATATAGCAAGCATGTTGTCAGTGTTTCCACGAAATGCAAGAAATGTTCTTTTCATTTTTTGAATACCATCACTGTTGTTCCCTCTCTTCTTTGATGTTGTCATAATTTGAAAAATGTCATATTGCATATTTATCACAGCCGCAAACATCAATCTTTGTCCTTCTTTTCTTGCATGAATTCCCTCGGTTTGAGTCCATTGGACTCCCTTTGTTACTCTCCTTGCATCTCGGGTTGGGTAGAAACCCAATGATTCCTCCATCGAGTCAGCAACCTTTCTATATGAGCGTGGAAATGAAAACAGGTTTGGGAAGTCCAAAATGGGCAGTACGCATGCTATATACATCAGTATACACTAGTATACACCACGGAAATATTGATATGCAGGTCAAAATGCAACAAATACTAGTAAAAAACGAAGATACAGGTTGGAGGCGTCAAGGTGGACTGTATACAGTCGATATATGGGTTGGTATGTAGGTCAAAATGCAACAAATACTAGGTAGAAACGAAGATACTGGGTGGAGGCATCAAGGTGGACTGTATACAGTCGATGTATGGGTTAATATGTAGGAAATGATGCTGATATGCGAGCTGTATACACTGATATACAGTTTGTGTATACAAAAATGGGTTTTGGGTTAAACCCGAAAAGTAGTAGCAAATTTGGCCAAGAAAAGCCCAAATTCATCTTCTCCTTTATTTCTCTTAGCTTACTTAATTGTGACTATTTATTGCTTTGTGTTTTTGGTTAACTCTAACTTTAAATAACTTACTTAAATTTTTAAAAGATGAACTGTATTTTTTATGTTGGTTTATTTTGATATAGTTTACTTTTATCAACTCTTACATTTTTATTCAATATATTTAACCAAAACCTTTTATTTATTTTTCAAATAATTTAAAATGATTTTCATGCTCAAATTAACTAGTTTAAATTATTTTTTTACAAATGAGTCAAGTAAATTTAATAAATTTTAGTTTTATTAAAATTCTAGTCACTTGCATTTCAATTCAAATGCTTCAACTAAGTACCAATTTTATATTCTTTTAACTATTTTCTCAAGTTAATCAAATATTTTAAATTAATATAATTATGTTCGTATCAATCATTTTCCTAAAAAATAGTCAAAAAAATTTTAACCTAAGTCGTACGATAATTGCATGTTAGCGGACGTTTCAAATACCTTAAAAACCTTCTTGAAGCGTAAATAAAAATCTCTTACCCATTTTCTCTAAATTTATTAAGATTTAGTCTGTTAAAATCTTTTTAAGTTAAGTTTTCTTAATTTCTTTTTTTAAAAAAAATAAGTGGGGATCTGCTCGTGGAATAGAAAAAGTTTGTTGCATCAACAAAGTGTATTAGTCAAAAAGGCTTACTTAAGCTAATCGATGTGTATTCCTAGGCTGTGAAAGAGAGGGCGGACCATTGAATTAGAACATCCATATCTTGTTCTAAAAGTTGTCTTTGAAATATTATATTCTCTAACTTTCAACTGATGGTAGCATGATCTAAGATCAATTTTTGAGAAGTAGGAAGCAAAGGTGGTCGAAAAGACCATCAATCCTTCGAATATGATATTTATTCTTGATAAACCTTGTTCAATTGGTGGTAATCTATACACATTCTAAGGGAACCATCTTTTTTTTCTCACAATTAAGACAGGAGCACCCCAAGGTGAGACACTTGGTCGAATGAAACCCTTGTCTAACAAATCTTTCAACTGTTCTTTCAACTCTTTCAAATCTGATGGTGCCATTATATATGGCGGAATAGAGATAGGACGAATATATGGAATAATGTCTGTCGAAGTCTATTTATCTCTTCAGGAGGGACTTCGGGTAGATCATCAAGAAAGACTTATGAAAACTCTTTTATTATAGAAATTGACTAAATGGGAGGTACCTCAACACTTGAGTCATTACTCAGACTAAGTGATAAATACAACACTTAAAAACTAACTTTCTTTCCTTGAGGTACGAAATGGAATGACCCATAGGCACTGCTGAAATGATTTTCCACTCTATAACTGGTTCACTAGAAAACTGGAGCTTGACTACTTGAGTGCTTATCTATTGATGCATAATAGGCATTATGTCAGTCCATACCTAGAATGACATCAAACTCTACCATGTCTAACTATACTAAGTCATCCATGATATTCTTGTGATTTATGAGAAATGGTACAATTATGATTGACTCTTTCAGCTAGAAAAGAATTCTCAAGATAAGTAAAAACACTAAAGGGATCATAAAGTTACTCATGAAAAACATCAAAACTGAAGACTTGGATCATGTGACAATATCTGGGGAATCCTATTGCTCTCAGTGACTAGTGATAGCATAAAAATGGTTTCCTTCTCCGTCTACACCTGAAGTAGCTTATCCAGATGCAACTCTTATTTGGTGAAGAAACTGAAGTGTACTGGGTTGTATTGCCCTCTTTATCATTTCTTTGTCTGTACTTAGGAAATTCTCTTATAAAATCCCAATTTTGGCTACATTTTAAGCAATCAATGAATCCATCACGACACACCCCTGAATGACTTCTACCACAGTGGGAACATGCAAGAGTCTAAGTACCACCTTGCAGTAAGCTGGTCTAGATCTATCAATTTTGAGAATCTTGAGTATTGTACACACAATGGTTCCTTGATGCAGGTGCACTAGAAGATGAAAAAATAGATCCTTTCAATTTACGTTAGAAAGAAGACCAGTTCACGTACCTTTTTTTTTTACCCAAACTCATTCCTTGATGTGTTATCCCTCAGCTTGTCCTCCTCAACTTGTTGAACATGGATCATTAGCCTTGCTATGCTCATGACAGCTACTAGTATGGTTGTCCTACTTTCCTTGCTTGATAGACGAGGCAACCCAATAACAACAAAGCTCATTTTAGTCCTCATGTCGACAACAATATCTTAGTTTTTCTTAGATCATATAAAAAAGAAACGCCTCAAAAAGGCGGCCTCAACAATTACCAGCTCAGAAACGCCTCTAACGCACGAAAAGAGTGTGAAAAAAGTGAGATAGTTCTTATATGTTGCAGCCTCCTTGTTAGGACCCTCAAAACGATCTAGGATAATCTAGAGTTCCAGATGTGCCTTAAGAGTTTATAACTCCTTTACAAGGCGTGTAACAGCTTGTAATGGTTGGTTTGATGAGGTTTGAGGTCCAACGTCAAAGAACGACCAAGACGTCTGAAAACTAGTCGTTTGTATAGCTAGTGTGCCTTTGTATGTTTGTCTTGTGTTGGAGTGTTGTTTGAAGTCTAAAATGATAGGGGGTATCCTAATAAGCATATGGTTGTGTTTAGGATCGAAACGTTTGGGCACAACTCCCCAAGAACCACCCTCACAGTCCTTGGGGAGGACCCAAAGGTTGGCAAAAATCGGCCAAGGAAATGTCACCACGACTATGATCGATGACTAGTGGTTTGAATGATGCCCTGTCGTTAGGGGGGCGTCTCCACTTAGTTGGGAGCTTAGCCCCCAAATGAGGGAATTTTTATCACAAACGATGAAGTGCAGGATTGTAACACTTCGGAAGTCTAAGACGTATTCTAGAGCCTAACATGAGTGTCACAGGGTTTAGATATTGTTTTAAGGTTAATTTTAATGTACATAAATCATTTAGGAAGTCTAGGAATCAAAACGTCGAAGAATGTCCATGACGTCTGGAAACTAGTTCAATGAGGTGTTAGTGTGCCTTATCATATTTGACATGCTTTTTGGAGTCAAAAAATGATGAAAATTGGTGGAAGGGTATCTAATACATGTTAGAGTTAGTTCATAGTCAAAATGTTTGGGCACAACTCCCCAAGGACCAATCAAGGGCCCTTGAGGAGAACCCTTGCGATTTGGCAAGAGGCTGCCAAAAGGCAGTGTTCATAGACGGTTGTCATCAACGAATCGTGTGTCAATCATCTGGGGGTCGATTGCCTATGTTGACGGACACTTAGAAAAATTGTCTAAGGCCTGTTTTGGACTAGTCTCTGAACTCAACAACGAACCAACATGACAGTTGGTCCTTGGCCTGTCGATTGACAAATAGGGCATCGGTCGGGGTTCCGTCTGTGAGGTTTGTGTTTTGCTGCACGTTTTGACTTGATTCATTTAATTAGTTGGCTTAGTTAGGAGGTTAATTAGGGGTTAGGGGAGGTCTAATTAAATTTGTTAATGACCTATATAAAGACCCTAAGATAATTAGACTAACCTAAGATCTCATAATTCTCAAACCCAAAACTCTCTTCTTTCTCTCTCCCAAACAAACCCCATTGAATACCAAGTTAGAGGTGGGTTCAAGGGCTGCAAAGGGTCAAGTTTCTCCATCAATCTTCATCAAAAACTAAGGTATGAGATTCCTTTCACCTTTGAGACTTCTTTCCTCAAAGGGTTCCATCAAATTGATTTCCAAAATATGACGGATCCCCACTTGCCTAAGGTAGGGTCCTTCTTGAGACATCACATGGGGTTTCCAATAACTACTCCTATGCGGACACATAGTTAAGGTATAAGGAGATTTCTTCTAAGTGACTCATTTATCTTCTAACGAGGAGCATTTATAACAACCCAAAAAAATGAAATGGGTCAAACTAGAGCTTAACATGTGTTCCATGAGTTAACAGTGTATTAAAATATTTAATTTTAGCATTAGAAGTTAGTTCGTAAAGTTTGGGATCATTTGGAAGTCAAACGCCTAAGACGTTCGAAAACTAGTTGAAGTTGAACTAGTGTGTCGTCGTGTTTTTGGTGAAGTTTTGGGGGATGGTTTGAGAGTGATATTGAGTGTCAATGGTTCCTATGTATAGAGGGATGTAACAAGTGTCAAAACGTCCGAGTACAACTCCTCGGGGACCACTCAAAGGGCCCCCAAGGAGGACCCAAACATGGGTCAAGATGCTGCCCAAGGCAGCGTACAGGGGCAGGATATGAAGCCCAACCTTGCGACGTTCCCTTGACACGAGGTCTACTTCCTCAGAATTTTTGAAAGGCAAAAATCAAGATCTTGCCTCGCGATGCGCAGCCAAGTCCCAGATTTGGCCGCGACGTTTTTAAGTAAAATTTCAAGTTTGGAAAGGGTCCAAATGGTGTGGGTGTATTTTGGGGACTTTGGGGATCATTTGTGTACTGATTTAGGCAATTTTAAACCTAATTTCACCTATCATTTCCAACCCTAAAGATCAAATTAAATTTCTCCAAAACCTTCTCTCCAAAAACCTCCATTGAAGAAGCTTCAAGCTCCAAGGAAGAGGACCAACTTCTTCACGTTTTCTTCACCAAATTTTTGTGGGTTTATTCATATTAAGGTATAGTAGTCATCCTTGAACCTTCTTTCATTCAAGGAGCCACTTCAAAGAGATTTCAAAAAGGATTTCAACTTGAAACTTCTTTATTCCTTGACTCTAAGTATGGGTCTTTGCATGAAAATGTTTTATTGATTAAAATGAGTTTTCCTAGTTATAAATGATGATTTTAATGAGAAAACCCCAATGGAATCATGTCTGGATTATGAAATGGGTTCTATGATCATGAGTAGATAATGTTAAAGTTATTGTTTCTTGGTGTTTTTATTGAGTTTTAGATGTTGCCCTAAAGGGGGCTATTTTATGATGGATTATCGGATAAATTGTGTATAGGTGGTGAAATCTTGGATGAATGGTAAGTTGGCTATGCTTTTTAATCCTTATTTTTTAATTAACTCTTGAGTGGTATGGTCAAACTTTGGAGGTGGTGTTTACTTGAAATATATGAAGTTATATGTGTATTGTGAGAATGACCTTGGAAGCATCATATGTGAAGTGAAATGATAATTTTGATATGTATATGTATGATGATGTGTAAATTATGATAAATGTGAGTTGAGCATGTCTAGAATTCAATGTTATGAATAGTGGTCATTATGTGAAAGATGTGCTCACATGTGGTCACAGACACACTTGAATGCATGAATAAAGTCAATGAATGAAAATGGGGGATTGTAGGGTGAACACTCTTTGTGAGTAGAGATGAAGAGTCTAGACCATCCCTACTATTCCTAAGTATGAAAAAGGGGTATTTTGGGGTGAACACTCTTTGTGAGTAGAGATGAAGTGTTTAGTAGAAACCTCATTATTCCTAATGAACTTTCCAAGATAGGTCGGAGGTTGGATACCCTTCGTGAGTTGAAATGGGGTGTTCAATAGTTATCTCCTAACCTATAGTCAATGAATGTTTAAGACTCCATGGGGAGTTATGCTTAGCACCGAGAGTATTTGAAGAAGGGGTGGGTACACTTCGTGAGTAAAGAGGTTCTGTTCAATGTACCTCTTGATATATGTGCTTCTCATTAGTAGAGAGTGAGTTACCTAGTAACAATCTTTTTATACCTTAAATATGTGTCTGCGCAGGTGTAGGTATTGGAGAACCCATGTAAAAGCTAAAGAATATGACCCTGCCTTAGGCAAGTAGGGATCCCTCATCCGATTAGGATATACCGGGATTCCATGTCAAGCTCTCATCGTCTATGTCGGTTAAAGCTATCCCCCACAAATGTATCCAAATGAACTAAGTCTTCTTAAGGGTGTACTACTTAGGGTAGAAGGTGGAATGAGACGCTACATATCCATTGCACAAGTATGCATTTGGAGGGAGTCTTGGTATGTCCTTATATGAAATGTATGAATGGGTCATGATATGATGTAAATGAAAGTAATGTGACTTATGTTAAATGTTAAGAAAGCATGTTGATGTTAAGACTTGTATGATGAAAGCTTAGTATGTGATGAATGTGATGTGCCTATTCTAAGGTTATTCCTAAGGAGCATTAAGTGGAAGTGGTAGTATGGGATGATGCTTTCACATTGCACCAAGTGTAAATTGGGGGTTTCCTTGGAAGATGGTTCTTATGTGAAGTTCCTAAGTGTATGTATGTTTCTATAGTGCCTTTAGTATTGAATGTTGACTTGCTAAGTGAAATGAAGTATGATTGTCCTTGGTAGTCTTAAGGATCACTTGGGTGTGTGGTGAAGAGATTGTATGAGCAATCTCCTCATGTCTTAACTAAGCGGGTCTTAGGATAACTTGGGATAGGAAGAATTATGTGTTAAGTGGGTTCACTGTAAGTATGCTTTTATGTTGAGAAAAATGGATGTTTTACTTTATGTGCTAATGATGGTTTTAAATGATGTCTTGTAACTTAATTCATGAAGCTTTTTACCAAAATAGCATGACTTGTATGTTTATACTAAATGTCCCTTTTTGCATGATTTTTCATATGTCATACTTAGTAAATTGTTTGTACTAACCCCATACTCTTCTATACTTTATAGGTTGGAGCCGAGTTGAAGGGTAGAAGGCAAGTTTGGGAATCGACTCTCTCAAGACTAAATATGTCCTCATATATTCGAAGGCATAGTCTTTGTTTCTTTAGTTTCTTCTTTTAAGGCTTGTTAAGATTTATTATGTATTTATTTCAATGTGAAAAGGTTGTGTCCCTAAGATATTTATGTCTTGTCTTTAAGTTGGCTTGTGATGACGAGACATATTTCTTAGCTTTTATAAAAAAAGTTTCTTATT</genome_strand>
        <mrna_strand>TTTTTTTCATTTTTTTCAAATTTGGGCGGGCTCCAGCTCCAAACGGCGCCAACAGTACGCCTGCAATAACCGCGTCCCGTCCCCTTTTCTCCCCCTTTTGCGAAGTTTTCAGATAAGGGAATGACTCCCCTTTCCTTTTACTGTTGATCTCGAAAAGGAGCAAAGAAAAAATTCAATCTCCTCTTTAAAAAAGTCCAACGGATTTCCCCCATCAAATTTGATCTCAATTTTCTGTAAATAGTCTCTTCTTCACTGTGCTGAGGAAGGGGGCAAGCATAGTAAGAGGTTTTTTGTTTTTAGTGTTTGAATTCCTGAGCAATAGTCATTTCTACACTTCAAAATTTTCGAATTTTCTTAGCTTGCCGTTAGTAGTTGAAGGGAGTGGTGGAATTACTCTTCTCGTCGTCCTAGTATCGTTGCTCCGAGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGCCGAGTTGAAGGGTAGAAGGCAAGTTTGGGAATCGACTCTCTCAAGACTAAATATGTCCTCATATATTCGAAGGCATAGTCTTTGTTTCTTTAGTTTCTTCTTTTAAGGCTTGTTAAGATTTATTATGTATTTATTTCAATGTGAAAAGGTTGTGTCCCTAAGATATTTATGTCTTGTCTTTAAGTTGGCTTGTGATGACGAGACATATTTCTTAGCTTTTATAAAAAAAGTTTCTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396238" ref_strand="+" ref_description="SGN-E396238 [TUS-34-M24](-)">
      <seq>caataaccgcgtcccgtccccttttctccccctttttgcgaagttttcagataagggaatgactcccctttccttttactgttgatctcgaaaaggagcaaagaaaaaattcaatctcctctttaaaaaagtccaacggatttcccccatcaaatttgatctcaattttctgtaaatagtctcttcttcactgtgctgaggaagggggcaagcatagtaagaggttttttgtttttagtgtttgaattcctgagcaatagtcatttctacacttcaaaattttcgaattttcttagcttgccgttagtagttgaagggagtggtggaattactcttctcgtcgtcctagtatcgttgctccgagaaaggttggagccgagttgaagggtagaaggcaagtttgggaatcgactctctcaagactaaatatgtcctcatatattcgaaggcatagtctttgtttctttagtttcttcttttaaggcttgttaagatttattatgtatttatttcaatgtgaaaaggttgtgtccctaagatatttatgtcttgtctttaagttggcttgtgatgacgagacatatttcttagcttttataaaaaaagtttcttattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="-" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="97431" stop="87476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97131" g_stop="96765" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96764" i_stop="88024" i_length="8741">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88023" g_stop="87777" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="615" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="616" polyA_stop="626"/>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="-" ref_id="SGN-E396238" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97131" e_stop="96765"/>
          <exon e_start="88023" e_stop="87777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAACCGCGTCCCGTCCCCTTTTCTCCCCC-TTTTGCGAAGTTTTCAGATAAGGGAATGACTCCCCTTTCCTTTTACTGTTGATCTCGAAAAGGAGCAAAGAAAAAATTCAATCTCCTCTTTAAAAAAGTCCAACGGATTTCCCCCATCAAATTTGATCTCAATTTTCTGTAAATAGTCTCTTCTTCACTGTGCTGAGGAAGGGGGCAAGCATAGTAAGAGGTTTTTTGTTTTTAGTGTTTGAATTCCTGAGCAATAGTCATTTCTACACTTCAAAATTTTCGAATTTTCTTAGCTTGCCGTTAGTAGTTGAAGGGAGTGGTGGAATTACTCTTCTCGTCGTCCTAGTATCGTTGCTCCGAGAAAGGTGATGTCCTTATTCCTACCTCTCGTTTTCCTTTCAAATGATGTATGTTCTATTTTGTTTTCTGCCTAAAGGATTATTCTTTTGGACAGTTCATTGTTGGTTTGTTTTTAGATGATATAGTATTTTGAGTTGTTTGTTGACAAAATATTACTAATTAAGATTGACTTTTTTCTTATATTGCTATAGCTCATGTATTGTGATTTGAAGCTAGTTCATCAAGCTATTTCTCACTGATTGTTTCACAGTTCATTCTTTCTTAAAAACAAAAAAATAAAACAAAATTGAACTTTGTGGCTTTGTGATTTAAGCTTTATCCTTTTTTCTTGTTGGCATGATCAATAGTTCTTGTCGTCTTAGCAATCAAATGTAGCTAAAATAGTGTTAATCCTTCCAAATGGTTAGTCTCATAGTTCTGGTTTTTTCTTGGTTTAAACTCGTTTTGGTCTTAACAGGTTGCTATCATGTTTTTGTTGTACGCCTAAAGCTGCCGAGTCAAACATATTGTCGTGCTTGACTTGTCCTACCCAAACATCCGTCCCTCTGTTTTTTGTTGTGGGCTGTTACTTGTTATTGTCTTTAAATCATTGAAATCTCAGAATCCGCAAAAGTGGCAGTTGTATGTCGTTTATTATGTTTTATAGATTTGATGATCACCTTCCCTCTTCATCTAAGTCTTGTTACCATCTTATGGTCCAATGTGCCATGTTAGAATTGAGTTTATGTCTCTATTTCATTTAGATTCTCGTCAAAAATATTTGCTACTAGTAGTGGACTTAAGGCCAAGGAAGAGATTTTGCTGCCTTCCAAACCTTGGCTTGTTCCAGCACTCGCTTTCCTTTAACCAAATGCCCATCTGTGAGCTTTTGAATTAGACGTCTAGCATTTGGTTTAATTTAGATTATTAGATTGCCAAATGCGATATTTGTTTAAATATGTGCTAAGTCTTTATCAATCCAGGTGTCTGAGCTTTACTTGAACTATGTATCTGATTTGTTTTCTAGAATATGCAATTTTTTACACCTACTGGTGTATCTCTTTTGTGTTATTAGAAATCTGCAAATTACCATTTGTTTTATTTTTCGTGCGTACATGTATGTGACTTCAAATTTCTCTAGGCTTAGACTTTGATAGTTTAGTGTTATAAATTCATTTCTTCCATCCATGTTATAATGTTCTCCATGTTTAGTTTCTTAGTACTGTTAAAAATAAAAGGAACCACAATTGTTTGTTTGATACAATAGCTGATCATTTCTTTTTCAAAGGCCATGGATGAATTAGTCAACACTGACTTCGTTCAGTTATATATGCAAGCATGCTTAGTTTCTTAGTACTGTTAAAATTAGAAGGAACCATAATTGTTTGTTTGATACAATAGCTATTCATTTCTTTTTCAAAGGCCATGGATGAATTAGTCAACAGTGACTTTGTTCAATGATATAGCAAGCATGTTGTCAGTGTTTCCACGAAATGCAAGAAATGTTCTTTTCATTTTTTGAATACCATCACTGTTGTTCCCTCTCTTCTTTGATGTTGTCATAATTTGAAAAATGTCATATTGCATATTTATCACAGCCGCAAACATCAATCTTTGTCCTTCTTTTCTTGCATGAATTCCCTCGGTTTGAGTCCATTGGACTCCCTTTGTTACTCTCCTTGCATCTCGGGTTGGGTAGAAACCCAATGATTCCTCCATCGAGTCAGCAACCTTTCTATATGAGCGTGGAAATGAAAACAGGTTTGGGAAGTCCAAAATGGGCAGTACGCATGCTATATACATCAGTATACACTAGTATACACCACGGAAATATTGATATGCAGGTCAAAATGCAACAAATACTAGTAAAAAACGAAGATACAGGTTGGAGGCGTCAAGGTGGACTGTATACAGTCGATATATGGGTTGGTATGTAGGTCAAAATGCAACAAATACTAGGTAGAAACGAAGATACTGGGTGGAGGCATCAAGGTGGACTGTATACAGTCGATGTATGGGTTAATATGTAGGAAATGATGCTGATATGCGAGCTGTATACACTGATATACAGTTTGTGTATACAAAAATGGGTTTTGGGTTAAACCCGAAAAGTAGTAGCAAATTTGGCCAAGAAAAGCCCAAATTCATCTTCTCCTTTATTTCTCTTAGCTTACTTAATTGTGACTATTTATTGCTTTGTGTTTTTGGTTAACTCTAACTTTAAATAACTTACTTAAATTTTTAAAAGATGAACTGTATTTTTTATGTTGGTTTATTTTGATATAGTTTACTTTTATCAACTCTTACATTTTTATTCAATATATTTAACCAAAACCTTTTATTTATTTTTCAAATAATTTAAAATGATTTTCATGCTCAAATTAACTAGTTTAAATTATTTTTTTACAAATGAGTCAAGTAAATTTAATAAATTTTAGTTTTATTAAAATTCTAGTCACTTGCATTTCAATTCAAATGCTTCAACTAAGTACCAATTTTATATTCTTTTAACTATTTTCTCAAGTTAATCAAATATTTTAAATTAATATAATTATGTTCGTATCAATCATTTTCCTAAAAAATAGTCAAAAAAATTTTAACCTAAGTCGTACGATAATTGCATGTTAGCGGACGTTTCAAATACCTTAAAAACCTTCTTGAAGCGTAAATAAAAATCTCTTACCCATTTTCTCTAAATTTATTAAGATTTAGTCTGTTAAAATCTTTTTAAGTTAAGTTTTCTTAATTTCTTTTTTTAAAAAAAATAAGTGGGGATCTGCTCGTGGAATAGAAAAAGTTTGTTGCATCAACAAAGTGTATTAGTCAAAAAGGCTTACTTAAGCTAATCGATGTGTATTCCTAGGCTGTGAAAGAGAGGGCGGACCATTGAATTAGAACATCCATATCTTGTTCTAAAAGTTGTCTTTGAAATATTATATTCTCTAACTTTCAACTGATGGTAGCATGATCTAAGATCAATTTTTGAGAAGTAGGAAGCAAAGGTGGTCGAAAAGACCATCAATCCTTCGAATATGATATTTATTCTTGATAAACCTTGTTCAATTGGTGGTAATCTATACACATTCTAAGGGAACCATCTTTTTTTTCTCACAATTAAGACAGGAGCACCCCAAGGTGAGACACTTGGTCGAATGAAACCCTTGTCTAACAAATCTTTCAACTGTTCTTTCAACTCTTTCAAATCTGATGGTGCCATTATATATGGCGGAATAGAGATAGGACGAATATATGGAATAATGTCTGTCGAAGTCTATTTATCTCTTCAGGAGGGACTTCGGGTAGATCATCAAGAAAGACTTATGAAAACTCTTTTATTATAGAAATTGACTAAATGGGAGGTACCTCAACACTTGAGTCATTACTCAGACTAAGTGATAAATACAACACTTAAAAACTAACTTTCTTTCCTTGAGGTACGAAATGGAATGACCCATAGGCACTGCTGAAATGATTTTCCACTCTATAACTGGTTCACTAGAAAACTGGAGCTTGACTACTTGAGTGCTTATCTATTGATGCATAATAGGCATTATGTCAGTCCATACCTAGAATGACATCAAACTCTACCATGTCTAACTATACTAAGTCATCCATGATATTCTTGTGATTTATGAGAAATGGTACAATTATGATTGACTCTTTCAGCTAGAAAAGAATTCTCAAGATAAGTAAAAACACTAAAGGGATCATAAAGTTACTCATGAAAAACATCAAAACTGAAGACTTGGATCATGTGACAATATCTGGGGAATCCTATTGCTCTCAGTGACTAGTGATAGCATAAAAATGGTTTCCTTCTCCGTCTACACCTGAAGTAGCTTATCCAGATGCAACTCTTATTTGGTGAAGAAACTGAAGTGTACTGGGTTGTATTGCCCTCTTTATCATTTCTTTGTCTGTACTTAGGAAATTCTCTTATAAAATCCCAATTTTGGCTACATTTTAAGCAATCAATGAATCCATCACGACACACCCCTGAATGACTTCTACCACAGTGGGAACATGCAAGAGTCTAAGTACCACCTTGCAGTAAGCTGGTCTAGATCTATCAATTTTGAGAATCTTGAGTATTGTACACACAATGGTTCCTTGATGCAGGTGCACTAGAAGATGAAAAAATAGATCCTTTCAATTTACGTTAGAAAGAAGACCAGTTCACGTACCTTTTTTTTTTACCCAAACTCATTCCTTGATGTGTTATCCCTCAGCTTGTCCTCCTCAACTTGTTGAACATGGATCATTAGCCTTGCTATGCTCATGACAGCTACTAGTATGGTTGTCCTACTTTCCTTGCTTGATAGACGAGGCAACCCAATAACAACAAAGCTCATTTTAGTCCTCATGTCGACAACAATATCTTAGTTTTTCTTAGATCATATAAAAAAGAAACGCCTCAAAAAGGCGGCCTCAACAATTACCAGCTCAGAAACGCCTCTAACGCACGAAAAGAGTGTGAAAAAAGTGAGATAGTTCTTATATGTTGCAGCCTCCTTGTTAGGACCCTCAAAACGATCTAGGATAATCTAGAGTTCCAGATGTGCCTTAAGAGTTTATAACTCCTTTACAAGGCGTGTAACAGCTTGTAATGGTTGGTTTGATGAGGTTTGAGGTCCAACGTCAAAGAACGACCAAGACGTCTGAAAACTAGTCGTTTGTATAGCTAGTGTGCCTTTGTATGTTTGTCTTGTGTTGGAGTGTTGTTTGAAGTCTAAAATGATAGGGGGTATCCTAATAAGCATATGGTTGTGTTTAGGATCGAAACGTTTGGGCACAACTCCCCAAGAACCACCCTCACAGTCCTTGGGGAGGACCCAAAGGTTGGCAAAAATCGGCCAAGGAAATGTCACCACGACTATGATCGATGACTAGTGGTTTGAATGATGCCCTGTCGTTAGGGGGGCGTCTCCACTTAGTTGGGAGCTTAGCCCCCAAATGAGGGAATTTTTATCACAAACGATGAAGTGCAGGATTGTAACACTTCGGAAGTCTAAGACGTATTCTAGAGCCTAACATGAGTGTCACAGGGTTTAGATATTGTTTTAAGGTTAATTTTAATGTACATAAATCATTTAGGAAGTCTAGGAATCAAAACGTCGAAGAATGTCCATGACGTCTGGAAACTAGTTCAATGAGGTGTTAGTGTGCCTTATCATATTTGACATGCTTTTTGGAGTCAAAAAATGATGAAAATTGGTGGAAGGGTATCTAATACATGTTAGAGTTAGTTCATAGTCAAAATGTTTGGGCACAACTCCCCAAGGACCAATCAAGGGCCCTTGAGGAGAACCCTTGCGATTTGGCAAGAGGCTGCCAAAAGGCAGTGTTCATAGACGGTTGTCATCAACGAATCGTGTGTCAATCATCTGGGGGTCGATTGCCTATGTTGACGGACACTTAGAAAAATTGTCTAAGGCCTGTTTTGGACTAGTCTCTGAACTCAACAACGAACCAACATGACAGTTGGTCCTTGGCCTGTCGATTGACAAATAGGGCATCGGTCGGGGTTCCGTCTGTGAGGTTTGTGTTTTGCTGCACGTTTTGACTTGATTCATTTAATTAGTTGGCTTAGTTAGGAGGTTAATTAGGGGTTAGGGGAGGTCTAATTAAATTTGTTAATGACCTATATAAAGACCCTAAGATAATTAGACTAACCTAAGATCTCATAATTCTCAAACCCAAAACTCTCTTCTTTCTCTCTCCCAAACAAACCCCATTGAATACCAAGTTAGAGGTGGGTTCAAGGGCTGCAAAGGGTCAAGTTTCTCCATCAATCTTCATCAAAAACTAAGGTATGAGATTCCTTTCACCTTTGAGACTTCTTTCCTCAAAGGGTTCCATCAAATTGATTTCCAAAATATGACGGATCCCCACTTGCCTAAGGTAGGGTCCTTCTTGAGACATCACATGGGGTTTCCAATAACTACTCCTATGCGGACACATAGTTAAGGTATAAGGAGATTTCTTCTAAGTGACTCATTTATCTTCTAACGAGGAGCATTTATAACAACCCAAAAAAATGAAATGGGTCAAACTAGAGCTTAACATGTGTTCCATGAGTTAACAGTGTATTAAAATATTTAATTTTAGCATTAGAAGTTAGTTCGTAAAGTTTGGGATCATTTGGAAGTCAAACGCCTAAGACGTTCGAAAACTAGTTGAAGTTGAACTAGTGTGTCGTCGTGTTTTTGGTGAAGTTTTGGGGGATGGTTTGAGAGTGATATTGAGTGTCAATGGTTCCTATGTATAGAGGGATGTAACAAGTGTCAAAACGTCCGAGTACAACTCCTCGGGGACCACTCAAAGGGCCCCCAAGGAGGACCCAAACATGGGTCAAGATGCTGCCCAAGGCAGCGTACAGGGGCAGGATATGAAGCCCAACCTTGCGACGTTCCCTTGACACGAGGTCTACTTCCTCAGAATTTTTGAAAGGCAAAAATCAAGATCTTGCCTCGCGATGCGCAGCCAAGTCCCAGATTTGGCCGCGACGTTTTTAAGTAAAATTTCAAGTTTGGAAAGGGTCCAAATGGTGTGGGTGTATTTTGGGGACTTTGGGGATCATTTGTGTACTGATTTAGGCAATTTTAAACCTAATTTCACCTATCATTTCCAACCCTAAAGATCAAATTAAATTTCTCCAAAACCTTCTCTCCAAAAACCTCCATTGAAGAAGCTTCAAGCTCCAAGGAAGAGGACCAACTTCTTCACGTTTTCTTCACCAAATTTTTGTGGGTTTATTCATATTAAGGTATAGTAGTCATCCTTGAACCTTCTTTCATTCAAGGAGCCACTTCAAAGAGATTTCAAAAAGGATTTCAACTTGAAACTTCTTTATTCCTTGACTCTAAGTATGGGTCTTTGCATGAAAATGTTTTATTGATTAAAATGAGTTTTCCTAGTTATAAATGATGATTTTAATGAGAAAACCCCAATGGAATCATGTCTGGATTATGAAATGGGTTCTATGATCATGAGTAGATAATGTTAAAGTTATTGTTTCTTGGTGTTTTTATTGAGTTTTAGATGTTGCCCTAAAGGGGGCTATTTTATGATGGATTATCGGATAAATTGTGTATAGGTGGTGAAATCTTGGATGAATGGTAAGTTGGCTATGCTTTTTAATCCTTATTTTTTAATTAACTCTTGAGTGGTATGGTCAAACTTTGGAGGTGGTGTTTACTTGAAATATATGAAGTTATATGTGTATTGTGAGAATGACCTTGGAAGCATCATATGTGAAGTGAAATGATAATTTTGATATGTATATGTATGATGATGTGTAAATTATGATAAATGTGAGTTGAGCATGTCTAGAATTCAATGTTATGAATAGTGGTCATTATGTGAAAGATGTGCTCACATGTGGTCACAGACACACTTGAATGCATGAATAAAGTCAATGAATGAAAATGGGGGATTGTAGGGTGAACACTCTTTGTGAGTAGAGATGAAGAGTCTAGACCATCCCTACTATTCCTAAGTATGAAAAAGGGGTATTTTGGGGTGAACACTCTTTGTGAGTAGAGATGAAGTGTTTAGTAGAAACCTCATTATTCCTAATGAACTTTCCAAGATAGGTCGGAGGTTGGATACCCTTCGTGAGTTGAAATGGGGTGTTCAATAGTTATCTCCTAACCTATAGTCAATGAATGTTTAAGACTCCATGGGGAGTTATGCTTAGCACCGAGAGTATTTGAAGAAGGGGTGGGTACACTTCGTGAGTAAAGAGGTTCTGTTCAATGTACCTCTTGATATATGTGCTTCTCATTAGTAGAGAGTGAGTTACCTAGTAACAATCTTTTTATACCTTAAATATGTGTCTGCGCAGGTGTAGGTATTGGAGAACCCATGTAAAAGCTAAAGAATATGACCCTGCCTTAGGCAAGTAGGGATCCCTCATCCGATTAGGATATACCGGGATTCCATGTCAAGCTCTCATCGTCTATGTCGGTTAAAGCTATCCCCCACAAATGTATCCAAATGAACTAAGTCTTCTTAAGGGTGTACTACTTAGGGTAGAAGGTGGAATGAGACGCTACATATCCATTGCACAAGTATGCATTTGGAGGGAGTCTTGGTATGTCCTTATATGAAATGTATGAATGGGTCATGATATGATGTAAATGAAAGTAATGTGACTTATGTTAAATGTTAAGAAAGCATGTTGATGTTAAGACTTGTATGATGAAAGCTTAGTATGTGATGAATGTGATGTGCCTATTCTAAGGTTATTCCTAAGGAGCATTAAGTGGAAGTGGTAGTATGGGATGATGCTTTCACATTGCACCAAGTGTAAATTGGGGGTTTCCTTGGAAGATGGTTCTTATGTGAAGTTCCTAAGTGTATGTATGTTTCTATAGTGCCTTTAGTATTGAATGTTGACTTGCTAAGTGAAATGAAGTATGATTGTCCTTGGTAGTCTTAAGGATCACTTGGGTGTGTGGTGAAGAGATTGTATGAGCAATCTCCTCATGTCTTAACTAAGCGGGTCTTAGGATAACTTGGGATAGGAAGAATTATGTGTTAAGTGGGTTCACTGTAAGTATGCTTTTATGTTGAGAAAAATGGATGTTTTACTTTATGTGCTAATGATGGTTTTAAATGATGTCTTGTAACTTAATTCATGAAGCTTTTTACCAAAATAGCATGACTTGTATGTTTATACTAAATGTCCCTTTTTGCATGATTTTTCATATGTCATACTTAGTAAATTGTTTGTACTAACCCCATACTCTTCTATACTTTATAGGTTGGAGCCGAGTTGAAGGGTAGAAGGCAAGTTTGGGAATCGACTCTCTCAAGACTAAATATGTCCTCATATATTCGAAGGCATAGTCTTTGTTTCTTTAGTTTCTTCTTTTAAGGCTTGTTAAGATTTATTATGTATTTATTTCAATGTGAAAAGGTTGTGTCCCTAAGATATTTATGTCTTGTCTTTAAGTTGGCTTGTGATGACGAGACATATTTCTTAGCTTTTATAAAAAAAGTTTCTTATT</genome_strand>
        <mrna_strand>CAATAACCGCGTCCCGTCCCCTTTTCTCCCCCTTTTTGCGAAGTTTTCAGATAAGGGAATGACTCCCCTTTCCTTTTACTGTTGATCTCGAAAAGGAGCAAAGAAAAAATTCAATCTCCTCTTTAAAAAAGTCCAACGGATTTCCCCCATCAAATTTGATCTCAATTTTCTGTAAATAGTCTCTTCTTCACTGTGCTGAGGAAGGGGGCAAGCATAGTAAGAGGTTTTTTGTTTTTAGTGTTTGAATTCCTGAGCAATAGTCATTTCTACACTTCAAAATTTTCGAATTTTCTTAGCTTGCCGTTAGTAGTTGAAGGGAGTGGTGGAATTACTCTTCTCGTCGTCCTAGTATCGTTGCTCCGAGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395005" ref_strand="+" ref_description="SGN-E395005 [TUS-34-M24]">
      <seq>cagaaatctcggtgaaccagctgtcctaagagaaaactgaaatccagcaaaagtcgcgtccaacagtacgccctctctttcatttttctcaaattcggccggctccagctccaaacggcgccaacagtacgcctgcaataaccgcgtcccgtccccttttctcccccttttgcgaagttttcagataagggaatgactcccctttccttttactgttgatctcgaaaaggagcaaagaaaaaattcaatctcctctttaaaaaagtccaacggatttcccccatcaaatttgatctcaattttctgtaaatagtctcttcttcactgtgctgaggaagggggcaagcatagtaagaggttttttgtttttagtgtttgaattcctgagcaatagtcatttctacacttcaaaattttcgaattttcttagcttgccgttagtagttgaagggagtggtggaattactcttctcgtcgtcctagtatcgttgctccgagaaaggttggagccgagttgaagggtagaaggcaagtttgggaatcgactctctcaagactaaatatgtcctcatatattcgaaggcatagtctttgtttctttagtttcttcttttaaggcttgttaagatttattatgtatttatttcaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="-" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="97566" stop="87573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97266" g_stop="96765" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96764" i_stop="88024" i_length="8741">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88023" g_stop="87873" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="653" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="-" ref_id="SGN-E395005" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97266" e_stop="96765"/>
          <exon e_start="88023" e_stop="87873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAATCTCGGTGAACCAGCTGTCCTAAGAGAAAACTGAAATCCAGCAAAAGTCGCGTCCAACAGTACGCCCTCTCTTTCATTTTTCTCAAATTCGGCCGGCTCCAGCTCCAAACGGCGCCAACAGTACGCCTGCAATAACCGCGTCCCGTCCCCTTTTCTCCCCCTTTTGCGAAGTTTTCAGATAAGGGAATGACTCCCCTTTCCTTTTACTGTTGATCTCGAAAAGGAGCAAAGAAAAAATTCAATCTCCTCTTTAAAAAAGTCCAACGGATTTCCCCCATCAAATTTGATCTCAATTTTCTGTAAATAGTCTCTTCTTCACTGTGCTGAGGAAGGGGGCAAGCATAGTAAGAGGTTTTTTGTTTTTAGTGTTTGAATTCCTGAGCAATAGTCATTTCTACACTTCAAAATTTTCGAATTTTCTTAGCTTGCCGTTAGTAGTTGAAGGGAGTGGTGGAATTACTCTTCTCGTCGTCCTAGTATCGTTGCTCCGAGAAAGGTGATGTCCTTATTCCTACCTCTCGTTTTCCTTTCAAATGATGTATGTTCTATTTTGTTTTCTGCCTAAAGGATTATTCTTTTGGACAGTTCATTGTTGGTTTGTTTTTAGATGATATAGTATTTTGAGTTGTTTGTTGACAAAATATTACTAATTAAGATTGACTTTTTTCTTATATTGCTATAGCTCATGTATTGTGATTTGAAGCTAGTTCATCAAGCTATTTCTCACTGATTGTTTCACAGTTCATTCTTTCTTAAAAACAAAAAAATAAAACAAAATTGAACTTTGTGGCTTTGTGATTTAAGCTTTATCCTTTTTTCTTGTTGGCATGATCAATAGTTCTTGTCGTCTTAGCAATCAAATGTAGCTAAAATAGTGTTAATCCTTCCAAATGGTTAGTCTCATAGTTCTGGTTTTTTCTTGGTTTAAACTCGTTTTGGTCTTAACAGGTTGCTATCATGTTTTTGTTGTACGCCTAAAGCTGCCGAGTCAAACATATTGTCGTGCTTGACTTGTCCTACCCAAACATCCGTCCCTCTGTTTTTTGTTGTGGGCTGTTACTTGTTATTGTCTTTAAATCATTGAAATCTCAGAATCCGCAAAAGTGGCAGTTGTATGTCGTTTATTATGTTTTATAGATTTGATGATCACCTTCCCTCTTCATCTAAGTCTTGTTACCATCTTATGGTCCAATGTGCCATGTTAGAATTGAGTTTATGTCTCTATTTCATTTAGATTCTCGTCAAAAATATTTGCTACTAGTAGTGGACTTAAGGCCAAGGAAGAGATTTTGCTGCCTTCCAAACCTTGGCTTGTTCCAGCACTCGCTTTCCTTTAACCAAATGCCCATCTGTGAGCTTTTGAATTAGACGTCTAGCATTTGGTTTAATTTAGATTATTAGATTGCCAAATGCGATATTTGTTTAAATATGTGCTAAGTCTTTATCAATCCAGGTGTCTGAGCTTTACTTGAACTATGTATCTGATTTGTTTTCTAGAATATGCAATTTTTTACACCTACTGGTGTATCTCTTTTGTGTTATTAGAAATCTGCAAATTACCATTTGTTTTATTTTTCGTGCGTACATGTATGTGACTTCAAATTTCTCTAGGCTTAGACTTTGATAGTTTAGTGTTATAAATTCATTTCTTCCATCCATGTTATAATGTTCTCCATGTTTAGTTTCTTAGTACTGTTAAAAATAAAAGGAACCACAATTGTTTGTTTGATACAATAGCTGATCATTTCTTTTTCAAAGGCCATGGATGAATTAGTCAACACTGACTTCGTTCAGTTATATATGCAAGCATGCTTAGTTTCTTAGTACTGTTAAAATTAGAAGGAACCATAATTGTTTGTTTGATACAATAGCTATTCATTTCTTTTTCAAAGGCCATGGATGAATTAGTCAACAGTGACTTTGTTCAATGATATAGCAAGCATGTTGTCAGTGTTTCCACGAAATGCAAGAAATGTTCTTTTCATTTTTTGAATACCATCACTGTTGTTCCCTCTCTTCTTTGATGTTGTCATAATTTGAAAAATGTCATATTGCATATTTATCACAGCCGCAAACATCAATCTTTGTCCTTCTTTTCTTGCATGAATTCCCTCGGTTTGAGTCCATTGGACTCCCTTTGTTACTCTCCTTGCATCTCGGGTTGGGTAGAAACCCAATGATTCCTCCATCGAGTCAGCAACCTTTCTATATGAGCGTGGAAATGAAAACAGGTTTGGGAAGTCCAAAATGGGCAGTACGCATGCTATATACATCAGTATACACTAGTATACACCACGGAAATATTGATATGCAGGTCAAAATGCAACAAATACTAGTAAAAAACGAAGATACAGGTTGGAGGCGTCAAGGTGGACTGTATACAGTCGATATATGGGTTGGTATGTAGGTCAAAATGCAACAAATACTAGGTAGAAACGAAGATACTGGGTGGAGGCATCAAGGTGGACTGTATACAGTCGATGTATGGGTTAATATGTAGGAAATGATGCTGATATGCGAGCTGTATACACTGATATACAGTTTGTGTATACAAAAATGGGTTTTGGGTTAAACCCGAAAAGTAGTAGCAAATTTGGCCAAGAAAAGCCCAAATTCATCTTCTCCTTTATTTCTCTTAGCTTACTTAATTGTGACTATTTATTGCTTTGTGTTTTTGGTTAACTCTAACTTTAAATAACTTACTTAAATTTTTAAAAGATGAACTGTATTTTTTATGTTGGTTTATTTTGATATAGTTTACTTTTATCAACTCTTACATTTTTATTCAATATATTTAACCAAAACCTTTTATTTATTTTTCAAATAATTTAAAATGATTTTCATGCTCAAATTAACTAGTTTAAATTATTTTTTTACAAATGAGTCAAGTAAATTTAATAAATTTTAGTTTTATTAAAATTCTAGTCACTTGCATTTCAATTCAAATGCTTCAACTAAGTACCAATTTTATATTCTTTTAACTATTTTCTCAAGTTAATCAAATATTTTAAATTAATATAATTATGTTCGTATCAATCATTTTCCTAAAAAATAGTCAAAAAAATTTTAACCTAAGTCGTACGATAATTGCATGTTAGCGGACGTTTCAAATACCTTAAAAACCTTCTTGAAGCGTAAATAAAAATCTCTTACCCATTTTCTCTAAATTTATTAAGATTTAGTCTGTTAAAATCTTTTTAAGTTAAGTTTTCTTAATTTCTTTTTTTAAAAAAAATAAGTGGGGATCTGCTCGTGGAATAGAAAAAGTTTGTTGCATCAACAAAGTGTATTAGTCAAAAAGGCTTACTTAAGCTAATCGATGTGTATTCCTAGGCTGTGAAAGAGAGGGCGGACCATTGAATTAGAACATCCATATCTTGTTCTAAAAGTTGTCTTTGAAATATTATATTCTCTAACTTTCAACTGATGGTAGCATGATCTAAGATCAATTTTTGAGAAGTAGGAAGCAAAGGTGGTCGAAAAGACCATCAATCCTTCGAATATGATATTTATTCTTGATAAACCTTGTTCAATTGGTGGTAATCTATACACATTCTAAGGGAACCATCTTTTTTTTCTCACAATTAAGACAGGAGCACCCCAAGGTGAGACACTTGGTCGAATGAAACCCTTGTCTAACAAATCTTTCAACTGTTCTTTCAACTCTTTCAAATCTGATGGTGCCATTATATATGGCGGAATAGAGATAGGACGAATATATGGAATAATGTCTGTCGAAGTCTATTTATCTCTTCAGGAGGGACTTCGGGTAGATCATCAAGAAAGACTTATGAAAACTCTTTTATTATAGAAATTGACTAAATGGGAGGTACCTCAACACTTGAGTCATTACTCAGACTAAGTGATAAATACAACACTTAAAAACTAACTTTCTTTCCTTGAGGTACGAAATGGAATGACCCATAGGCACTGCTGAAATGATTTTCCACTCTATAACTGGTTCACTAGAAAACTGGAGCTTGACTACTTGAGTGCTTATCTATTGATGCATAATAGGCATTATGTCAGTCCATACCTAGAATGACATCAAACTCTACCATGTCTAACTATACTAAGTCATCCATGATATTCTTGTGATTTATGAGAAATGGTACAATTATGATTGACTCTTTCAGCTAGAAAAGAATTCTCAAGATAAGTAAAAACACTAAAGGGATCATAAAGTTACTCATGAAAAACATCAAAACTGAAGACTTGGATCATGTGACAATATCTGGGGAATCCTATTGCTCTCAGTGACTAGTGATAGCATAAAAATGGTTTCCTTCTCCGTCTACACCTGAAGTAGCTTATCCAGATGCAACTCTTATTTGGTGAAGAAACTGAAGTGTACTGGGTTGTATTGCCCTCTTTATCATTTCTTTGTCTGTACTTAGGAAATTCTCTTATAAAATCCCAATTTTGGCTACATTTTAAGCAATCAATGAATCCATCACGACACACCCCTGAATGACTTCTACCACAGTGGGAACATGCAAGAGTCTAAGTACCACCTTGCAGTAAGCTGGTCTAGATCTATCAATTTTGAGAATCTTGAGTATTGTACACACAATGGTTCCTTGATGCAGGTGCACTAGAAGATGAAAAAATAGATCCTTTCAATTTACGTTAGAAAGAAGACCAGTTCACGTACCTTTTTTTTTTACCCAAACTCATTCCTTGATGTGTTATCCCTCAGCTTGTCCTCCTCAACTTGTTGAACATGGATCATTAGCCTTGCTATGCTCATGACAGCTACTAGTATGGTTGTCCTACTTTCCTTGCTTGATAGACGAGGCAACCCAATAACAACAAAGCTCATTTTAGTCCTCATGTCGACAACAATATCTTAGTTTTTCTTAGATCATATAAAAAAGAAACGCCTCAAAAAGGCGGCCTCAACAATTACCAGCTCAGAAACGCCTCTAACGCACGAAAAGAGTGTGAAAAAAGTGAGATAGTTCTTATATGTTGCAGCCTCCTTGTTAGGACCCTCAAAACGATCTAGGATAATCTAGAGTTCCAGATGTGCCTTAAGAGTTTATAACTCCTTTACAAGGCGTGTAACAGCTTGTAATGGTTGGTTTGATGAGGTTTGAGGTCCAACGTCAAAGAACGACCAAGACGTCTGAAAACTAGTCGTTTGTATAGCTAGTGTGCCTTTGTATGTTTGTCTTGTGTTGGAGTGTTGTTTGAAGTCTAAAATGATAGGGGGTATCCTAATAAGCATATGGTTGTGTTTAGGATCGAAACGTTTGGGCACAACTCCCCAAGAACCACCCTCACAGTCCTTGGGGAGGACCCAAAGGTTGGCAAAAATCGGCCAAGGAAATGTCACCACGACTATGATCGATGACTAGTGGTTTGAATGATGCCCTGTCGTTAGGGGGGCGTCTCCACTTAGTTGGGAGCTTAGCCCCCAAATGAGGGAATTTTTATCACAAACGATGAAGTGCAGGATTGTAACACTTCGGAAGTCTAAGACGTATTCTAGAGCCTAACATGAGTGTCACAGGGTTTAGATATTGTTTTAAGGTTAATTTTAATGTACATAAATCATTTAGGAAGTCTAGGAATCAAAACGTCGAAGAATGTCCATGACGTCTGGAAACTAGTTCAATGAGGTGTTAGTGTGCCTTATCATATTTGACATGCTTTTTGGAGTCAAAAAATGATGAAAATTGGTGGAAGGGTATCTAATACATGTTAGAGTTAGTTCATAGTCAAAATGTTTGGGCACAACTCCCCAAGGACCAATCAAGGGCCCTTGAGGAGAACCCTTGCGATTTGGCAAGAGGCTGCCAAAAGGCAGTGTTCATAGACGGTTGTCATCAACGAATCGTGTGTCAATCATCTGGGGGTCGATTGCCTATGTTGACGGACACTTAGAAAAATTGTCTAAGGCCTGTTTTGGACTAGTCTCTGAACTCAACAACGAACCAACATGACAGTTGGTCCTTGGCCTGTCGATTGACAAATAGGGCATCGGTCGGGGTTCCGTCTGTGAGGTTTGTGTTTTGCTGCACGTTTTGACTTGATTCATTTAATTAGTTGGCTTAGTTAGGAGGTTAATTAGGGGTTAGGGGAGGTCTAATTAAATTTGTTAATGACCTATATAAAGACCCTAAGATAATTAGACTAACCTAAGATCTCATAATTCTCAAACCCAAAACTCTCTTCTTTCTCTCTCCCAAACAAACCCCATTGAATACCAAGTTAGAGGTGGGTTCAAGGGCTGCAAAGGGTCAAGTTTCTCCATCAATCTTCATCAAAAACTAAGGTATGAGATTCCTTTCACCTTTGAGACTTCTTTCCTCAAAGGGTTCCATCAAATTGATTTCCAAAATATGACGGATCCCCACTTGCCTAAGGTAGGGTCCTTCTTGAGACATCACATGGGGTTTCCAATAACTACTCCTATGCGGACACATAGTTAAGGTATAAGGAGATTTCTTCTAAGTGACTCATTTATCTTCTAACGAGGAGCATTTATAACAACCCAAAAAAATGAAATGGGTCAAACTAGAGCTTAACATGTGTTCCATGAGTTAACAGTGTATTAAAATATTTAATTTTAGCATTAGAAGTTAGTTCGTAAAGTTTGGGATCATTTGGAAGTCAAACGCCTAAGACGTTCGAAAACTAGTTGAAGTTGAACTAGTGTGTCGTCGTGTTTTTGGTGAAGTTTTGGGGGATGGTTTGAGAGTGATATTGAGTGTCAATGGTTCCTATGTATAGAGGGATGTAACAAGTGTCAAAACGTCCGAGTACAACTCCTCGGGGACCACTCAAAGGGCCCCCAAGGAGGACCCAAACATGGGTCAAGATGCTGCCCAAGGCAGCGTACAGGGGCAGGATATGAAGCCCAACCTTGCGACGTTCCCTTGACACGAGGTCTACTTCCTCAGAATTTTTGAAAGGCAAAAATCAAGATCTTGCCTCGCGATGCGCAGCCAAGTCCCAGATTTGGCCGCGACGTTTTTAAGTAAAATTTCAAGTTTGGAAAGGGTCCAAATGGTGTGGGTGTATTTTGGGGACTTTGGGGATCATTTGTGTACTGATTTAGGCAATTTTAAACCTAATTTCACCTATCATTTCCAACCCTAAAGATCAAATTAAATTTCTCCAAAACCTTCTCTCCAAAAACCTCCATTGAAGAAGCTTCAAGCTCCAAGGAAGAGGACCAACTTCTTCACGTTTTCTTCACCAAATTTTTGTGGGTTTATTCATATTAAGGTATAGTAGTCATCCTTGAACCTTCTTTCATTCAAGGAGCCACTTCAAAGAGATTTCAAAAAGGATTTCAACTTGAAACTTCTTTATTCCTTGACTCTAAGTATGGGTCTTTGCATGAAAATGTTTTATTGATTAAAATGAGTTTTCCTAGTTATAAATGATGATTTTAATGAGAAAACCCCAATGGAATCATGTCTGGATTATGAAATGGGTTCTATGATCATGAGTAGATAATGTTAAAGTTATTGTTTCTTGGTGTTTTTATTGAGTTTTAGATGTTGCCCTAAAGGGGGCTATTTTATGATGGATTATCGGATAAATTGTGTATAGGTGGTGAAATCTTGGATGAATGGTAAGTTGGCTATGCTTTTTAATCCTTATTTTTTAATTAACTCTTGAGTGGTATGGTCAAACTTTGGAGGTGGTGTTTACTTGAAATATATGAAGTTATATGTGTATTGTGAGAATGACCTTGGAAGCATCATATGTGAAGTGAAATGATAATTTTGATATGTATATGTATGATGATGTGTAAATTATGATAAATGTGAGTTGAGCATGTCTAGAATTCAATGTTATGAATAGTGGTCATTATGTGAAAGATGTGCTCACATGTGGTCACAGACACACTTGAATGCATGAATAAAGTCAATGAATGAAAATGGGGGATTGTAGGGTGAACACTCTTTGTGAGTAGAGATGAAGAGTCTAGACCATCCCTACTATTCCTAAGTATGAAAAAGGGGTATTTTGGGGTGAACACTCTTTGTGAGTAGAGATGAAGTGTTTAGTAGAAACCTCATTATTCCTAATGAACTTTCCAAGATAGGTCGGAGGTTGGATACCCTTCGTGAGTTGAAATGGGGTGTTCAATAGTTATCTCCTAACCTATAGTCAATGAATGTTTAAGACTCCATGGGGAGTTATGCTTAGCACCGAGAGTATTTGAAGAAGGGGTGGGTACACTTCGTGAGTAAAGAGGTTCTGTTCAATGTACCTCTTGATATATGTGCTTCTCATTAGTAGAGAGTGAGTTACCTAGTAACAATCTTTTTATACCTTAAATATGTGTCTGCGCAGGTGTAGGTATTGGAGAACCCATGTAAAAGCTAAAGAATATGACCCTGCCTTAGGCAAGTAGGGATCCCTCATCCGATTAGGATATACCGGGATTCCATGTCAAGCTCTCATCGTCTATGTCGGTTAAAGCTATCCCCCACAAATGTATCCAAATGAACTAAGTCTTCTTAAGGGTGTACTACTTAGGGTAGAAGGTGGAATGAGACGCTACATATCCATTGCACAAGTATGCATTTGGAGGGAGTCTTGGTATGTCCTTATATGAAATGTATGAATGGGTCATGATATGATGTAAATGAAAGTAATGTGACTTATGTTAAATGTTAAGAAAGCATGTTGATGTTAAGACTTGTATGATGAAAGCTTAGTATGTGATGAATGTGATGTGCCTATTCTAAGGTTATTCCTAAGGAGCATTAAGTGGAAGTGGTAGTATGGGATGATGCTTTCACATTGCACCAAGTGTAAATTGGGGGTTTCCTTGGAAGATGGTTCTTATGTGAAGTTCCTAAGTGTATGTATGTTTCTATAGTGCCTTTAGTATTGAATGTTGACTTGCTAAGTGAAATGAAGTATGATTGTCCTTGGTAGTCTTAAGGATCACTTGGGTGTGTGGTGAAGAGATTGTATGAGCAATCTCCTCATGTCTTAACTAAGCGGGTCTTAGGATAACTTGGGATAGGAAGAATTATGTGTTAAGTGGGTTCACTGTAAGTATGCTTTTATGTTGAGAAAAATGGATGTTTTACTTTATGTGCTAATGATGGTTTTAAATGATGTCTTGTAACTTAATTCATGAAGCTTTTTACCAAAATAGCATGACTTGTATGTTTATACTAAATGTCCCTTTTTGCATGATTTTTCATATGTCATACTTAGTAAATTGTTTGTACTAACCCCATACTCTTCTATACTTTATAGGTTGGAGCCGAGTTGAAGGGTAGAAGGCAAGTTTGGGAATCGACTCTCTCAAGACTAAATATGTCCTCATATATTCGAAGGCATAGTCTTTGTTTCTTTAGTTTCTTCTTTTAAGGCTTGTTAAGATTTATTATGTATTTATTTCAATGTG</genome_strand>
        <mrna_strand>CAGAAATCTCGGTGAACCAGCTGTCCTAAGAGAAAACTGAAATCCAGCAAAAGTCGCGTCCAACAGTACGCCCTCTCTTTCATTTTTCTCAAATTCGGCCGGCTCCAGCTCCAAACGGCGCCAACAGTACGCCTGCAATAACCGCGTCCCGTCCCCTTTTCTCCCCCTTTTGCGAAGTTTTCAGATAAGGGAATGACTCCCCTTTCCTTTTACTGTTGATCTCGAAAAGGAGCAAAGAAAAAATTCAATCTCCTCTTTAAAAAAGTCCAACGGATTTCCCCCATCAAATTTGATCTCAATTTTCTGTAAATAGTCTCTTCTTCACTGTGCTGAGGAAGGGGGCAAGCATAGTAAGAGGTTTTTTGTTTTTAGTGTTTGAATTCCTGAGCAATAGTCATTTCTACACTTCAAAATTTTCGAATTTTCTTAGCTTGCCGTTAGTAGTTGAAGGGAGTGGTGGAATTACTCTTCTCGTCGTCCTAGTATCGTTGCTCCGAGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGCCGAGTTGAAGGGTAGAAGGCAAGTTTGGGAATCGACTCTCTCAAGACTAAATATGTCCTCATATATTCGAAGGCATAGTCTTTGTTTCTTTAGTTTCTTCTTTTAAGGCTTGTTAAGATTTATTATGTATTTATTTCAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398380" ref_strand="+" ref_description="SGN-E398380 [TUS-34-O24]">
      <seq>cagaaatctcggtgaaccagctgtcctaagagaaaactgaaatccagcaaaagtcgcgtccaacagtacgccctctctttcatttttctcaaattcggccggctccagctccaaacggcgccaacagtacgcctgcaataaccgcgtcccgtccccttttctcccccttttgcgaagttttcagataagggaatgactcccctttccttttactgttgatctcgaaaaggagcaaagaaaaaattcaatctcctctttaaaaaagtccaacggatttcccccatcaaatttgatctcaattttctgtaaatagtctcttcttcactgtgctgaggaagggggcaagcatagtaagaggttttttgtttttagtgtttgaattcctgagcaatagtcatttctacacttcaaaattttcgaattttcttagcttgccgttagtagttgaagggagtggtggaattactcttctcgtcgtcctagtatcgttgctccgagaaaggttggagccgagttgaaaggtacaaggcaagtttgggaatcgactctctcaagactaaatatgtcctcatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="-" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="97566" stop="87650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97266" g_stop="96765" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96764" i_stop="88024" i_length="8741">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88023" g_stop="87950" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="576" r_length="74" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="-" ref_id="SGN-E398380" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97266" e_stop="96765"/>
          <exon e_start="88023" e_stop="87950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAATCTCGGTGAACCAGCTGTCCTAAGAGAAAACTGAAATCCAGCAAAAGTCGCGTCCAACAGTACGCCCTCTCTTTCATTTTTCTCAAATTCGGCCGGCTCCAGCTCCAAACGGCGCCAACAGTACGCCTGCAATAACCGCGTCCCGTCCCCTTTTCTCCCCCTTTTGCGAAGTTTTCAGATAAGGGAATGACTCCCCTTTCCTTTTACTGTTGATCTCGAAAAGGAGCAAAGAAAAAATTCAATCTCCTCTTTAAAAAAGTCCAACGGATTTCCCCCATCAAATTTGATCTCAATTTTCTGTAAATAGTCTCTTCTTCACTGTGCTGAGGAAGGGGGCAAGCATAGTAAGAGGTTTTTTGTTTTTAGTGTTTGAATTCCTGAGCAATAGTCATTTCTACACTTCAAAATTTTCGAATTTTCTTAGCTTGCCGTTAGTAGTTGAAGGGAGTGGTGGAATTACTCTTCTCGTCGTCCTAGTATCGTTGCTCCGAGAAAGGTGATGTCCTTATTCCTACCTCTCGTTTTCCTTTCAAATGATGTATGTTCTATTTTGTTTTCTGCCTAAAGGATTATTCTTTTGGACAGTTCATTGTTGGTTTGTTTTTAGATGATATAGTATTTTGAGTTGTTTGTTGACAAAATATTACTAATTAAGATTGACTTTTTTCTTATATTGCTATAGCTCATGTATTGTGATTTGAAGCTAGTTCATCAAGCTATTTCTCACTGATTGTTTCACAGTTCATTCTTTCTTAAAAACAAAAAAATAAAACAAAATTGAACTTTGTGGCTTTGTGATTTAAGCTTTATCCTTTTTTCTTGTTGGCATGATCAATAGTTCTTGTCGTCTTAGCAATCAAATGTAGCTAAAATAGTGTTAATCCTTCCAAATGGTTAGTCTCATAGTTCTGGTTTTTTCTTGGTTTAAACTCGTTTTGGTCTTAACAGGTTGCTATCATGTTTTTGTTGTACGCCTAAAGCTGCCGAGTCAAACATATTGTCGTGCTTGACTTGTCCTACCCAAACATCCGTCCCTCTGTTTTTTGTTGTGGGCTGTTACTTGTTATTGTCTTTAAATCATTGAAATCTCAGAATCCGCAAAAGTGGCAGTTGTATGTCGTTTATTATGTTTTATAGATTTGATGATCACCTTCCCTCTTCATCTAAGTCTTGTTACCATCTTATGGTCCAATGTGCCATGTTAGAATTGAGTTTATGTCTCTATTTCATTTAGATTCTCGTCAAAAATATTTGCTACTAGTAGTGGACTTAAGGCCAAGGAAGAGATTTTGCTGCCTTCCAAACCTTGGCTTGTTCCAGCACTCGCTTTCCTTTAACCAAATGCCCATCTGTGAGCTTTTGAATTAGACGTCTAGCATTTGGTTTAATTTAGATTATTAGATTGCCAAATGCGATATTTGTTTAAATATGTGCTAAGTCTTTATCAATCCAGGTGTCTGAGCTTTACTTGAACTATGTATCTGATTTGTTTTCTAGAATATGCAATTTTTTACACCTACTGGTGTATCTCTTTTGTGTTATTAGAAATCTGCAAATTACCATTTGTTTTATTTTTCGTGCGTACATGTATGTGACTTCAAATTTCTCTAGGCTTAGACTTTGATAGTTTAGTGTTATAAATTCATTTCTTCCATCCATGTTATAATGTTCTCCATGTTTAGTTTCTTAGTACTGTTAAAAATAAAAGGAACCACAATTGTTTGTTTGATACAATAGCTGATCATTTCTTTTTCAAAGGCCATGGATGAATTAGTCAACACTGACTTCGTTCAGTTATATATGCAAGCATGCTTAGTTTCTTAGTACTGTTAAAATTAGAAGGAACCATAATTGTTTGTTTGATACAATAGCTATTCATTTCTTTTTCAAAGGCCATGGATGAATTAGTCAACAGTGACTTTGTTCAATGATATAGCAAGCATGTTGTCAGTGTTTCCACGAAATGCAAGAAATGTTCTTTTCATTTTTTGAATACCATCACTGTTGTTCCCTCTCTTCTTTGATGTTGTCATAATTTGAAAAATGTCATATTGCATATTTATCACAGCCGCAAACATCAATCTTTGTCCTTCTTTTCTTGCATGAATTCCCTCGGTTTGAGTCCATTGGACTCCCTTTGTTACTCTCCTTGCATCTCGGGTTGGGTAGAAACCCAATGATTCCTCCATCGAGTCAGCAACCTTTCTATATGAGCGTGGAAATGAAAACAGGTTTGGGAAGTCCAAAATGGGCAGTACGCATGCTATATACATCAGTATACACTAGTATACACCACGGAAATATTGATATGCAGGTCAAAATGCAACAAATACTAGTAAAAAACGAAGATACAGGTTGGAGGCGTCAAGGTGGACTGTATACAGTCGATATATGGGTTGGTATGTAGGTCAAAATGCAACAAATACTAGGTAGAAACGAAGATACTGGGTGGAGGCATCAAGGTGGACTGTATACAGTCGATGTATGGGTTAATATGTAGGAAATGATGCTGATATGCGAGCTGTATACACTGATATACAGTTTGTGTATACAAAAATGGGTTTTGGGTTAAACCCGAAAAGTAGTAGCAAATTTGGCCAAGAAAAGCCCAAATTCATCTTCTCCTTTATTTCTCTTAGCTTACTTAATTGTGACTATTTATTGCTTTGTGTTTTTGGTTAACTCTAACTTTAAATAACTTACTTAAATTTTTAAAAGATGAACTGTATTTTTTATGTTGGTTTATTTTGATATAGTTTACTTTTATCAACTCTTACATTTTTATTCAATATATTTAACCAAAACCTTTTATTTATTTTTCAAATAATTTAAAATGATTTTCATGCTCAAATTAACTAGTTTAAATTATTTTTTTACAAATGAGTCAAGTAAATTTAATAAATTTTAGTTTTATTAAAATTCTAGTCACTTGCATTTCAATTCAAATGCTTCAACTAAGTACCAATTTTATATTCTTTTAACTATTTTCTCAAGTTAATCAAATATTTTAAATTAATATAATTATGTTCGTATCAATCATTTTCCTAAAAAATAGTCAAAAAAATTTTAACCTAAGTCGTACGATAATTGCATGTTAGCGGACGTTTCAAATACCTTAAAAACCTTCTTGAAGCGTAAATAAAAATCTCTTACCCATTTTCTCTAAATTTATTAAGATTTAGTCTGTTAAAATCTTTTTAAGTTAAGTTTTCTTAATTTCTTTTTTTAAAAAAAATAAGTGGGGATCTGCTCGTGGAATAGAAAAAGTTTGTTGCATCAACAAAGTGTATTAGTCAAAAAGGCTTACTTAAGCTAATCGATGTGTATTCCTAGGCTGTGAAAGAGAGGGCGGACCATTGAATTAGAACATCCATATCTTGTTCTAAAAGTTGTCTTTGAAATATTATATTCTCTAACTTTCAACTGATGGTAGCATGATCTAAGATCAATTTTTGAGAAGTAGGAAGCAAAGGTGGTCGAAAAGACCATCAATCCTTCGAATATGATATTTATTCTTGATAAACCTTGTTCAATTGGTGGTAATCTATACACATTCTAAGGGAACCATCTTTTTTTTCTCACAATTAAGACAGGAGCACCCCAAGGTGAGACACTTGGTCGAATGAAACCCTTGTCTAACAAATCTTTCAACTGTTCTTTCAACTCTTTCAAATCTGATGGTGCCATTATATATGGCGGAATAGAGATAGGACGAATATATGGAATAATGTCTGTCGAAGTCTATTTATCTCTTCAGGAGGGACTTCGGGTAGATCATCAAGAAAGACTTATGAAAACTCTTTTATTATAGAAATTGACTAAATGGGAGGTACCTCAACACTTGAGTCATTACTCAGACTAAGTGATAAATACAACACTTAAAAACTAACTTTCTTTCCTTGAGGTACGAAATGGAATGACCCATAGGCACTGCTGAAATGATTTTCCACTCTATAACTGGTTCACTAGAAAACTGGAGCTTGACTACTTGAGTGCTTATCTATTGATGCATAATAGGCATTATGTCAGTCCATACCTAGAATGACATCAAACTCTACCATGTCTAACTATACTAAGTCATCCATGATATTCTTGTGATTTATGAGAAATGGTACAATTATGATTGACTCTTTCAGCTAGAAAAGAATTCTCAAGATAAGTAAAAACACTAAAGGGATCATAAAGTTACTCATGAAAAACATCAAAACTGAAGACTTGGATCATGTGACAATATCTGGGGAATCCTATTGCTCTCAGTGACTAGTGATAGCATAAAAATGGTTTCCTTCTCCGTCTACACCTGAAGTAGCTTATCCAGATGCAACTCTTATTTGGTGAAGAAACTGAAGTGTACTGGGTTGTATTGCCCTCTTTATCATTTCTTTGTCTGTACTTAGGAAATTCTCTTATAAAATCCCAATTTTGGCTACATTTTAAGCAATCAATGAATCCATCACGACACACCCCTGAATGACTTCTACCACAGTGGGAACATGCAAGAGTCTAAGTACCACCTTGCAGTAAGCTGGTCTAGATCTATCAATTTTGAGAATCTTGAGTATTGTACACACAATGGTTCCTTGATGCAGGTGCACTAGAAGATGAAAAAATAGATCCTTTCAATTTACGTTAGAAAGAAGACCAGTTCACGTACCTTTTTTTTTTACCCAAACTCATTCCTTGATGTGTTATCCCTCAGCTTGTCCTCCTCAACTTGTTGAACATGGATCATTAGCCTTGCTATGCTCATGACAGCTACTAGTATGGTTGTCCTACTTTCCTTGCTTGATAGACGAGGCAACCCAATAACAACAAAGCTCATTTTAGTCCTCATGTCGACAACAATATCTTAGTTTTTCTTAGATCATATAAAAAAGAAACGCCTCAAAAAGGCGGCCTCAACAATTACCAGCTCAGAAACGCCTCTAACGCACGAAAAGAGTGTGAAAAAAGTGAGATAGTTCTTATATGTTGCAGCCTCCTTGTTAGGACCCTCAAAACGATCTAGGATAATCTAGAGTTCCAGATGTGCCTTAAGAGTTTATAACTCCTTTACAAGGCGTGTAACAGCTTGTAATGGTTGGTTTGATGAGGTTTGAGGTCCAACGTCAAAGAACGACCAAGACGTCTGAAAACTAGTCGTTTGTATAGCTAGTGTGCCTTTGTATGTTTGTCTTGTGTTGGAGTGTTGTTTGAAGTCTAAAATGATAGGGGGTATCCTAATAAGCATATGGTTGTGTTTAGGATCGAAACGTTTGGGCACAACTCCCCAAGAACCACCCTCACAGTCCTTGGGGAGGACCCAAAGGTTGGCAAAAATCGGCCAAGGAAATGTCACCACGACTATGATCGATGACTAGTGGTTTGAATGATGCCCTGTCGTTAGGGGGGCGTCTCCACTTAGTTGGGAGCTTAGCCCCCAAATGAGGGAATTTTTATCACAAACGATGAAGTGCAGGATTGTAACACTTCGGAAGTCTAAGACGTATTCTAGAGCCTAACATGAGTGTCACAGGGTTTAGATATTGTTTTAAGGTTAATTTTAATGTACATAAATCATTTAGGAAGTCTAGGAATCAAAACGTCGAAGAATGTCCATGACGTCTGGAAACTAGTTCAATGAGGTGTTAGTGTGCCTTATCATATTTGACATGCTTTTTGGAGTCAAAAAATGATGAAAATTGGTGGAAGGGTATCTAATACATGTTAGAGTTAGTTCATAGTCAAAATGTTTGGGCACAACTCCCCAAGGACCAATCAAGGGCCCTTGAGGAGAACCCTTGCGATTTGGCAAGAGGCTGCCAAAAGGCAGTGTTCATAGACGGTTGTCATCAACGAATCGTGTGTCAATCATCTGGGGGTCGATTGCCTATGTTGACGGACACTTAGAAAAATTGTCTAAGGCCTGTTTTGGACTAGTCTCTGAACTCAACAACGAACCAACATGACAGTTGGTCCTTGGCCTGTCGATTGACAAATAGGGCATCGGTCGGGGTTCCGTCTGTGAGGTTTGTGTTTTGCTGCACGTTTTGACTTGATTCATTTAATTAGTTGGCTTAGTTAGGAGGTTAATTAGGGGTTAGGGGAGGTCTAATTAAATTTGTTAATGACCTATATAAAGACCCTAAGATAATTAGACTAACCTAAGATCTCATAATTCTCAAACCCAAAACTCTCTTCTTTCTCTCTCCCAAACAAACCCCATTGAATACCAAGTTAGAGGTGGGTTCAAGGGCTGCAAAGGGTCAAGTTTCTCCATCAATCTTCATCAAAAACTAAGGTATGAGATTCCTTTCACCTTTGAGACTTCTTTCCTCAAAGGGTTCCATCAAATTGATTTCCAAAATATGACGGATCCCCACTTGCCTAAGGTAGGGTCCTTCTTGAGACATCACATGGGGTTTCCAATAACTACTCCTATGCGGACACATAGTTAAGGTATAAGGAGATTTCTTCTAAGTGACTCATTTATCTTCTAACGAGGAGCATTTATAACAACCCAAAAAAATGAAATGGGTCAAACTAGAGCTTAACATGTGTTCCATGAGTTAACAGTGTATTAAAATATTTAATTTTAGCATTAGAAGTTAGTTCGTAAAGTTTGGGATCATTTGGAAGTCAAACGCCTAAGACGTTCGAAAACTAGTTGAAGTTGAACTAGTGTGTCGTCGTGTTTTTGGTGAAGTTTTGGGGGATGGTTTGAGAGTGATATTGAGTGTCAATGGTTCCTATGTATAGAGGGATGTAACAAGTGTCAAAACGTCCGAGTACAACTCCTCGGGGACCACTCAAAGGGCCCCCAAGGAGGACCCAAACATGGGTCAAGATGCTGCCCAAGGCAGCGTACAGGGGCAGGATATGAAGCCCAACCTTGCGACGTTCCCTTGACACGAGGTCTACTTCCTCAGAATTTTTGAAAGGCAAAAATCAAGATCTTGCCTCGCGATGCGCAGCCAAGTCCCAGATTTGGCCGCGACGTTTTTAAGTAAAATTTCAAGTTTGGAAAGGGTCCAAATGGTGTGGGTGTATTTTGGGGACTTTGGGGATCATTTGTGTACTGATTTAGGCAATTTTAAACCTAATTTCACCTATCATTTCCAACCCTAAAGATCAAATTAAATTTCTCCAAAACCTTCTCTCCAAAAACCTCCATTGAAGAAGCTTCAAGCTCCAAGGAAGAGGACCAACTTCTTCACGTTTTCTTCACCAAATTTTTGTGGGTTTATTCATATTAAGGTATAGTAGTCATCCTTGAACCTTCTTTCATTCAAGGAGCCACTTCAAAGAGATTTCAAAAAGGATTTCAACTTGAAACTTCTTTATTCCTTGACTCTAAGTATGGGTCTTTGCATGAAAATGTTTTATTGATTAAAATGAGTTTTCCTAGTTATAAATGATGATTTTAATGAGAAAACCCCAATGGAATCATGTCTGGATTATGAAATGGGTTCTATGATCATGAGTAGATAATGTTAAAGTTATTGTTTCTTGGTGTTTTTATTGAGTTTTAGATGTTGCCCTAAAGGGGGCTATTTTATGATGGATTATCGGATAAATTGTGTATAGGTGGTGAAATCTTGGATGAATGGTAAGTTGGCTATGCTTTTTAATCCTTATTTTTTAATTAACTCTTGAGTGGTATGGTCAAACTTTGGAGGTGGTGTTTACTTGAAATATATGAAGTTATATGTGTATTGTGAGAATGACCTTGGAAGCATCATATGTGAAGTGAAATGATAATTTTGATATGTATATGTATGATGATGTGTAAATTATGATAAATGTGAGTTGAGCATGTCTAGAATTCAATGTTATGAATAGTGGTCATTATGTGAAAGATGTGCTCACATGTGGTCACAGACACACTTGAATGCATGAATAAAGTCAATGAATGAAAATGGGGGATTGTAGGGTGAACACTCTTTGTGAGTAGAGATGAAGAGTCTAGACCATCCCTACTATTCCTAAGTATGAAAAAGGGGTATTTTGGGGTGAACACTCTTTGTGAGTAGAGATGAAGTGTTTAGTAGAAACCTCATTATTCCTAATGAACTTTCCAAGATAGGTCGGAGGTTGGATACCCTTCGTGAGTTGAAATGGGGTGTTCAATAGTTATCTCCTAACCTATAGTCAATGAATGTTTAAGACTCCATGGGGAGTTATGCTTAGCACCGAGAGTATTTGAAGAAGGGGTGGGTACACTTCGTGAGTAAAGAGGTTCTGTTCAATGTACCTCTTGATATATGTGCTTCTCATTAGTAGAGAGTGAGTTACCTAGTAACAATCTTTTTATACCTTAAATATGTGTCTGCGCAGGTGTAGGTATTGGAGAACCCATGTAAAAGCTAAAGAATATGACCCTGCCTTAGGCAAGTAGGGATCCCTCATCCGATTAGGATATACCGGGATTCCATGTCAAGCTCTCATCGTCTATGTCGGTTAAAGCTATCCCCCACAAATGTATCCAAATGAACTAAGTCTTCTTAAGGGTGTACTACTTAGGGTAGAAGGTGGAATGAGACGCTACATATCCATTGCACAAGTATGCATTTGGAGGGAGTCTTGGTATGTCCTTATATGAAATGTATGAATGGGTCATGATATGATGTAAATGAAAGTAATGTGACTTATGTTAAATGTTAAGAAAGCATGTTGATGTTAAGACTTGTATGATGAAAGCTTAGTATGTGATGAATGTGATGTGCCTATTCTAAGGTTATTCCTAAGGAGCATTAAGTGGAAGTGGTAGTATGGGATGATGCTTTCACATTGCACCAAGTGTAAATTGGGGGTTTCCTTGGAAGATGGTTCTTATGTGAAGTTCCTAAGTGTATGTATGTTTCTATAGTGCCTTTAGTATTGAATGTTGACTTGCTAAGTGAAATGAAGTATGATTGTCCTTGGTAGTCTTAAGGATCACTTGGGTGTGTGGTGAAGAGATTGTATGAGCAATCTCCTCATGTCTTAACTAAGCGGGTCTTAGGATAACTTGGGATAGGAAGAATTATGTGTTAAGTGGGTTCACTGTAAGTATGCTTTTATGTTGAGAAAAATGGATGTTTTACTTTATGTGCTAATGATGGTTTTAAATGATGTCTTGTAACTTAATTCATGAAGCTTTTTACCAAAATAGCATGACTTGTATGTTTATACTAAATGTCCCTTTTTGCATGATTTTTCATATGTCATACTTAGTAAATTGTTTGTACTAACCCCATACTCTTCTATACTTTATAGGTTGGAGCCGAGTTGAAGGGTAGAAGGCAAGTTTGGGAATCGACTCTCTCAAGACTAAATATGTCCTCATATAT</genome_strand>
        <mrna_strand>CAGAAATCTCGGTGAACCAGCTGTCCTAAGAGAAAACTGAAATCCAGCAAAAGTCGCGTCCAACAGTACGCCCTCTCTTTCATTTTTCTCAAATTCGGCCGGCTCCAGCTCCAAACGGCGCCAACAGTACGCCTGCAATAACCGCGTCCCGTCCCCTTTTCTCCCCCTTTTGCGAAGTTTTCAGATAAGGGAATGACTCCCCTTTCCTTTTACTGTTGATCTCGAAAAGGAGCAAAGAAAAAATTCAATCTCCTCTTTAAAAAAGTCCAACGGATTTCCCCCATCAAATTTGATCTCAATTTTCTGTAAATAGTCTCTTCTTCACTGTGCTGAGGAAGGGGGCAAGCATAGTAAGAGGTTTTTTGTTTTTAGTGTTTGAATTCCTGAGCAATAGTCATTTCTACACTTCAAAATTTTCGAATTTTCTTAGCTTGCCGTTAGTAGTTGAAGGGAGTGGTGGAATTACTCTTCTCGTCGTCCTAGTATCGTTGCTCCGAGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGCCGAGTTGAAAGGTACAAGGCAAGTTTGGGAATCGACTCTCTCAAGACTAAATATGTCCTCATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720725" ref_strand="+" ref_description="SGN-E720725 [FC11CF10]">
      <seq>ttgttcatcttctaggaaggccttgcattaccaaacgacccgaccccctcgcgtttcttcttctcaccagctaacccagaaatctcggtgaaccagctgtcctaagagaaaactgaaatccagcaaaagtcgcgtccaacagtacgccctctctttcatttttctcaaattcggccggctccagctccaaacggcgccaacagtacgcctgcaataaccgcgtcccgtccccttttctcccccttttgcgaagttttcagataagggaatgactcccctttccttttactgttgatctcgaaaaggagcaaagaaaaaattcaatctcctctttaaaaaagtccaacggatttcccccatcaaatttgatctcaattttctgtaaatagtctcttcttcactgtgctgaggaagggggcaagcttagtaagaggttttttgtttttagtgtttgaattcctgagcaatagtcatttctacacttcgaaattttcgaattttcttagcttgccgttaatagttgaagggagtgggggaattactcttctcgtcgtcctagtatcgttgctccgagaaaaggttggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0027B24-XkAUO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0027B24.1" temp_strand="-" temp_description="C04HBa0027B24.1  CU914528.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0027B24 sequenced_by:sanger upload_account_name:uk">
        <position start="97642" stop="96463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97342" g_stop="96765" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0027B24.1" gen_strand="-" ref_id="SGN-E720725" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0027B24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97342" e_stop="96765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCATCTTCTAGGAAGGCCTTGCATTACCAAACGACCCGACCCCCTCGCGTTTCTTCTTCACACCAGCTAACCCAGAAATCTCGGTGAACCAGCTGTCCTAAGAGAAAACTGAAATCCAGCAAAAGTCGCGTCCAACAGTACGCCCTCTCTTTCATTTTTCTCAAATTCGGCCGGCTCCAGCTCCAAACGGCGCCAACAGTACGCCTGCAATAACCGCGTCCCGTCCCCTTTTCTCCCCCTTTTGCGAAGTTTTCAGATAAGGGAATGACTCCCCTTTCCTTTTACTGTTGATCTCGAAAAGGAGCAAAGAAAAAATTCAATCTCCTCTTTAAAAAAGTCCAACGGATTTCCCCCATCAAATTTGATCTCAATTTTCTGTAAATAGTCTCTTCTTCACTGTGCTGAGGAAGGGGGCAAGCATAGTAAGAGGTTTTTTGTTTTTAGTGTTTGAATTCCTGAGCAATAGTCATTTCTACACTTCAAAATTTTCGAATTTTCTTAGCTTGCCGTTAGTAGTTGAAGGGAGTGGTGGAATTACTCTTCTCGTCGTCCTAGTATCGTTGCTCCGAGAAAG</genome_strand>
        <mrna_strand>TTGTTCATCTTCTAGGAAGGCCTTGCATTACCAAACGACCCGACCCCCTCGCGTTTCTTCTTCTCACCAGCTAACCCAGAAATCTCGGTGAACCAGCTGTCCTAAGAGAAAACTGAAATCCAGCAAAAGTCGCGTCCAACAGTACGCCCTCTCTTTCATTTTTCTCAAATTCGGCCGGCTCCAGCTCCAAACGGCGCCAACAGTACGCCTGCAATAACCGCGTCCCGTCCCCTTTTCTCCCCCTTTTGCGAAGTTTTCAGATAAGGGAATGACTCCCCTTTCCTTTTACTGTTGATCTCGAAAAGGAGCAAAGAAAAAATTCAATCTCCTCTTTAAAAAAGTCCAACGGATTTCCCCCATCAAATTTGATCTCAATTTTCTGTAAATAGTCTCTTCTTCACTGTGCTGAGGAAGGGGGCAAGCTTAGTAAGAGGTTTTTTGTTTTTAGTGTTTGAATTCCTGAGCAATAGTCATTTCTACACTTCGAAATTTTCGAATTTTCTTAGCTTGCCGTTAATAGTTGAAGGGAGTGGGGGAATTACTCTTCTCGTCGTCCTAGTATCGTTGCTCCGAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>22</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="31942" PGL_stop="32085"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31942" e_stop="32085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="31942" e_stop="32085" e_length="144"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31942" stop="32085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31942" stop="32085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31942" stop="32085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31942" stop="32085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31942" stop="32085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAATCTCTTGTTGATTATAATTGTTTATCATGTCTTAATAATGTTATAATAACCATTTTTAGAAAGTTTGCTACAGAAATATTCCGCGAATAAGTATACCCAGACTATGTCATCCTAAGGTTGAAACCGATAGGCAAAGAAGG</gDNA_template>
            <first_frame> I  I  S  C  *  L  *  L  F  I  M  S  *  *  C  Y  N  N  H  F  *  K  V  C  Y  R  N  I  P  R  I  S  I  P  R  L  C  H  P  K  V  E  T  D  R  Q  R  R </first_frame>
            <second_frame>  *  S  L  V  D  Y  N  C  L  S  C  L  N  N  V  I  I  T  I  F  R  K  F  A  T  E  I  F  R  E  *  V  Y  P  D  Y  V  I  L  R  L  K  P  I  G  K  E   </second_frame>
            <third_frame>   N  L  L  L  I  I  I  V  Y  H  V  L  I  M  L  *  *  P  F  L  E  S  L  L  Q  K  Y  S  A  N  K  Y  T  Q  T  M  S  S  *  G  *  N  R  *  A  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0027B24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="34494" PGL_stop="35256"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34494" e_stop="35256"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="34494" e_stop="35256" e_length="763"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34494" stop="35256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343544" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATTATGTAAAAAATTATAAAATGAAAAGACCATATAGACCAAAAAGGAAAATATCCCAATGTACATGTTATAATTGAGGAAAGATAGGACACATAGCTAGAGATTGTACGTTACCAAAAGACCCAAAAAAGAAGCAAATTGCAGAAATAATTATAGATAGTGACAAATATATGCAAATAGAATATATAGACTATGAACTAAGTGAATATGATAGTATATACGAAGTATCAGACATAGAAACAGAAAATGGAGAAGAATATATTAATCTAAATAATGATATAATAGACGAAGAAATATAATGTCTGAAGACTATATAAAAATAATATCCAAAGAAGATTATCAAAATGAAGAGCTATCAGACCAAAAAATTATATTTGATAATACAATTTTTGAACAAATAAAAGGAAAAGAATTAGACTTAAGTGTTGAAAAAGTACTTGAAATACCTACTTTGAGAAATTGGTTTAAAAGACAAAAGGAAGAATATTATGTAGTTAGTCAGAAAGAACATATTATAGATTGTAAATATGCAAGAGGAAAAGCATACATACCTATACTAAGTAAACGAATAATAAATAAAGAAATACAAGATATAAAAGCTAAAACACCTATAAAGTATGTACATTTAGGAGGAACAGAAATATCAATAAAAGCTTGTTTTAGAGAAGGAATAGATACACCTATTGAAATATATACTTAGCAGATGATAGAATTATACACCCATAGAAAAAAGCGTAATTAGTGCAGTAAAAGGAAACCTA</gDNA_template>
            <first_frame> I  L  C  K  K  L  *  N  E  K  T  I  *  T  K  K  E  N  I  P  M  Y  M  L  *  L  R  K  D  R  T  H  S  *  R  L  Y  V  T  K  R  P  K  K  E  A  N  C  R  N  N  Y  R  *  *  Q  I  Y  A  N  R  I  Y  R  L  *  T  K  *  I  *  *  Y  I  R  S  I  R  H  R  N  R  K  W  R  R  I  Y  *  S  K  *  *  Y  N  R  R  R  N  I  M  S  E  D  Y  I  K  I  I  S  K  E  D  Y  Q  N  E  E  L  S  D  Q  K  I  I  F  D  N  T  I  F  E  Q  I  K  G  K  E  L  D  L  S  V  E  K  V  L  E  I  P  T  L  R  N  W  F  K  R  Q  K  E  E  Y  Y  V  V  S  Q  K  E  H  I  I  D  C  K  Y  A  R  G  K  A  Y  I  P  I  L  S  K  R  I  I  N  K  E  I  Q  D  I  K  A  K  T  P  I  K  Y  V  H  L  G  G  T  E  I  S  I  K  A  C  F  R  E  G  I  D  T  P  I  E  I  Y  T  *  Q  M  I  E  L  Y  T  H  R  K  K  R  N  *  C  S  K  R  K  P  </first_frame>
            <second_frame>  Y  Y  V  K  N  Y  K  M  K  R  P  Y  R  P  K  R  K  I  S  Q  C  T  C  Y  N  *  G  K  I  G  H  I  A  R  D  C  T  L  P  K  D  P  K  K  K  Q  I  A  E  I  I  I  D  S  D  K  Y  M  Q  I  E  Y  I  D  Y  E  L  S  E  Y  D  S  I  Y  E  V  S  D  I  E  T  E  N  G  E  E  Y  I  N  L  N  N  D  I  I  D  E  E  I  *  C  L  K  T  I  *  K  *  Y  P  K  K  I  I  K  M  K  S  Y  Q  T  K  K  L  Y  L  I  I  Q  F  L  N  K  *  K  E  K  N  *  T  *  V  L  K  K  Y  L  K  Y  L  L  *  E  I  G  L  K  D  K  R  K  N  I  M  *  L  V  R  K  N  I  L  *  I  V  N  M  Q  E  E  K  H  T  Y  L  Y  *  V  N  E  *  *  I  K  K  Y  K  I  *  K  L  K  H  L  *  S  M  Y  I  *  E  E  Q  K  Y  Q  *  K  L  V  L  E  K  E  *  I  H  L  L  K  Y  I  L  S  R  *  *  N  Y  T  P  I  E  K  S  V  I  S  A  V  K  G  N  L </second_frame>
            <third_frame>   I  M  *  K  I  I  K  *  K  D  H  I  D  Q  K  G  K  Y  P  N  V  H  V  I  I  E  E  R  *  D  T  *  L  E  I  V  R  Y  Q  K  T  Q  K  R  S  K  L  Q  K  *  L  *  I  V  T  N  I  C  K  *  N  I  *  T  M  N  *  V  N  M  I  V  Y  T  K  Y  Q  T  *  K  Q  K  M  E  K  N  I  L  I  *  I  M  I  *  *  T  K  K  Y  N  V  *  R  L  Y  K  N  N  I  Q  R  R  L  S  K  *  R  A  I  R  P  K  N  Y  I  *  *  Y  N  F  *  T  N  K  R  K  R  I  R  L  K  C  *  K  S  T  *  N  T  Y  F  E  K  L  V  *  K  T  K  G  R  I  L  C  S  *  S  E  R  T  Y  Y  R  L  *  I  C  K  R  K  S  I  H  T  Y  T  K  *  T  N  N  K  *  R  N  T  R  Y  K  S  *  N  T  Y  K  V  C  T  F  R  R  N  R  N  I  N  K  S  L  F  *  R  R  N  R  Y  T  Y  *  N  I  Y  L  A  D  D  R  I  I  H  P  *  K  K  A  *  L  V  Q  *  K  E  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0027B24.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34773" stop="35195"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNRRRNIMSEDYIKIISKEDYQNEELSDQKIIFDNTIFEQIKGKELDLSVEKVLEIPTLRNWFKRQKEEYYVVSQKEHIIDCKYARGKAYIPILSKRIINKEIQDIKAKTPIKYVHLGGTEISIKACFREGIDTPIEIYT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0027B24.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34573" stop="34794"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKIGHIARDCTLPKDPKKKQIAEIIIDSDKYMQIEYIDYELSEYDSIYEVSDIETENGEEYINLNNDIIDEEI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="38806" PGL_stop="39285"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38806" e_stop="39285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="38806" e_stop="39285" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38806" stop="39044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38807" stop="39285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCAACACAAGAGGATTAATGGATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGCCCTCATGTGTTAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCATCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTATATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  N  T  R  G  L  M  D  I  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  L  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  I  I  F  N  S  T  V  I  Q  A  S  L  T  I  S  E  I  Q  G  E  L  M  L  L  A  W  T </first_frame>
            <second_frame>  H  E  P  T  H  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  W  I  L  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  A  L  M  C  *  L  D  G  N  C  *  *  Y  S  I  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  S  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  F  K  P  V  L  L  Y  R  K  F  R  V  S  *  C  F  *  L  G   </second_frame>
            <third_frame>   T  N  R  H  I  D  L  G  D  R  S  V  T  Y  Q  H  K  R  I  N  G  Y  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  L  R  L  E  P  S  C  V  N  L  T  V  I  V  N  D  I  V  F  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  L  F  L  F  I  C  G  V  Q  Q  T  C  H  H  L  Q  L  N  S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0027B24.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39070" stop="39285"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPMISTQYPCFVLTPTFMFSSCLFVECSKRAIIFNSTVIQASLTISEIQGELMLLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="39133" PGL_stop="38822"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39133" e_stop="38822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="39133" e_stop="38822" e_length="312"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39133" stop="38822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTAACACATGAGGGCTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATCCATTAATCCTCTTGTGTTGGTACGTGACACTCCGATCCCCTAAATCT</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  N  T  I  S  L  T  I  T  V  K  L  T  H  E  G  S  S  L  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  Q  Y  P  L  I  L  L  C  W  Y  V  T  L  R  S  P  K  S </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  I  L  Y  H  *  Q  L  P  S  S  *  H  M  R  A  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  N  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N   </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  R  Q  V  N  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  I  S  I  N  P  L  V  L  V  R  D  T  P  I  P  *  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0027B24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="40442" PGL_stop="42945"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40442" e_stop="40626"/>
            <exon e_start="42627" e_stop="42945"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.919"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="40442" e_stop="40626" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40627" i_stop="42626" i_length="2000"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="42627" e_stop="42945" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40442" stop="40626"/>
              <exon start="42627" stop="42945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207232" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAGAAGTTACAGGGATATAACAAACATATAGCACAACCTAAAACCAGTCCAAATTTAGTTAAAACATGTTATAGCTATGGACTACTAAATACAATATATACATATACCGGAGAAGAAATAATTGAAATACCGGAATTACATAGAGCATTTGTGACATATAAGAGAATTACTAAAGGAAACCTAT : TTCATATAAAATTCTATACAGCACCAGCTGAGATATTATACGAGGATATAAAGTCGCCAATACAAGTTGTAAAGATAGGCCTGACCAGAGATATGATTATACCGGAAGAGATAGAGAAATAAATCGAGATACCAAAGATAGAAATACCAAACTTTTATGCGAATAAAAGAATAATTGGTATAGCAACAATTATACAAGAGTTAGCCAATAATTATTTAAATGGCAATGCTATTTAGAGTTATTATGCAAGAGATCAAGTAATGATTTATTCAAACTCCAAAGAGCTAAGGAAATCAGATATGAATGAAGTCCAGCGATG</gDNA_template>
            <first_frame> P  E  V  T  G  I  *  Q  T  Y  S  T  T  *  N  Q  S  K  F  S  *  N  M  L  *  L  W  T  T  K  Y  N  I  Y  I  Y  R  R  R  N  N  *  N  T  G  I  T  *  S  I  C  D  I  *  E  N  Y  *  R  K  P  I :   S  Y  K  I  L  Y  S  T  S  *  D  I  I  R  G  Y  K  V  A  N  T  S  C  K  D  R  P  D  Q  R  Y  D  Y  T  G  R  D  R  E  I  N  R  D  T  K  D  R  N  T  K  L  L  C  E  *  K  N  N  W  Y  S  N  N  Y  T  R  V  S  Q  *  L  F  K  W  Q  C  Y  L  E  L  L  C  K  R  S  S  N  D  L  F  K  L  Q  R  A  K  E  I  R  Y  E  *  S  P  A  M </first_frame>
            <second_frame>  Q  K  L  Q  G  Y  N  K  H  I  A  Q  P  K  T  S  P  N  L  V  K  T  C  Y  S  Y  G  L  L  N  T  I  Y  T  Y  T  G  E  E  I  I  E  I  P  E  L  H  R  A  F  V  T  Y  K  R  I  T  K  G  N  L   : F  H  I  K  F  Y  T  A  P  A  E  I  L  Y  E  D  I  K  S  P  I  Q  V  V  K  I  G  L  T  R  D  M  I  I  P  E  E  I  E  K  *  I  E  I  P  K  I  E  I  P  N  F  Y  A  N  K  R  I  I  G  I  A  T  I  I  Q  E  L  A  N  N  Y  L  N  G  N  A  I  *  S  Y  Y  A  R  D  Q  V  M  I  Y  S  N  S  K  E  L  R  K  S  D  M  N  E  V  Q  R   </second_frame>
            <third_frame>   R  S  Y  R  D  I  T  N  I  *  H  N  L  K  P  V  Q  I  *  L  K  H  V  I  A  M  D  Y  *  I  Q  Y  I  H  I  P  E  K  K  *  L  K  Y  R  N  Y  I  E  H  L  *  H  I  R  E  L  L  K  E  T  Y  :  F  I  *  N  S  I  Q  H  Q  L  R  Y  Y  T  R  I  *  S  R  Q  Y  K  L  *  R  *  A  *  P  E  I  *  L  Y  R  K  R  *  R  N  K  S  R  Y  Q  R  *  K  Y  Q  T  F  M  R  I  K  E  *  L  V  *  Q  Q  L  Y  K  S  *  P  I  I  I  *  M  A  M  L  F  R  V  I  M  Q  E  I  K  *  *  F  I  Q  T  P  K  S  *  G  N  Q  I  *  M  K  S  S  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0027B24.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40443" stop="40626"/>
                    <exon start="42627" stop="42748"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKLQGYNKHIAQPKTSPNLVKTCYSYGLLNTIYTYTGEEIIEIPELHRAFVTYKRITKGNLFHIKFYTAPAEILYEDIKSPIQVVKIGLTRDMIIPEEIEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41159" e_stop="41562"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="41159" e_stop="41562" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41159" stop="41562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATATTTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACCAAAATAATGGGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAATCGACAAGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACG</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  I  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  C  K  I  L  I  S  L  L  I  M  R  P  W  Y  K  R  R  R  D  E  P  K  *  W  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S  G  V  T  N  R  Q  V  V  L  G  D  R  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  E  P  T   </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  F  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  S  *  S  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  Q  N  N  G  I  D  D  A  L  V  R  K  K  A  *  *  I  D  R  R  R  L  G  D  R  V  S  R  I  D  K  *  Y  *  G  I  G  C  H  E  P  T  R  S  I  R  G  S  G  V  T  N  R  H  </second_frame>
            <third_frame>   I  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  Y  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  Q  N  P  N  L  F  V  N  N  E  A  L  V  *  K  K  A  *  *  T  K  I  M  G  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G  C  H  E  S  T  S  S  I  R  G  S  G  V  T  N  R  H  V  V  L  G  D  R  V  S  R  T  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0027B24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="55220" PGL_stop="54777"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55220" e_stop="54777"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="55220" e_stop="54777" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55220" stop="54777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353715" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAATTTTTGTGAATATGCTACCAGATGGAGGGAACAAGCTGCTAGGGTTAAACCACCGATGAAGGAGTCAGAGATGATTGACATTTTTCTCCAGGCGCAAGAACCTGATTACTTTCACTATCTGCTTTCTGCCGTAGGGAAGACATTCGCTGAAGTTATTAAGGTAGGGGAAATGGTGGAAAATGGCATCAAGTCTGGAAAGATTGTAAGTCAAGCTGCCTTAAAAGCCACAACACAAATGCTTCAAAATGGTTCTAGAAATATTGGAGGGAAGAAGAGAAGGGAGGATGTGGGCGCTATTGTATCAGCGCCTAGAACTCATGTCCAAGGTAATTCCTCACAACACTATTTTCCTTCCCAAGCTCCACAATATTCTGTCCCATACACTCCATATCATGTTTTTAATGCACAACCAATTGCACCCCCTTCTTATCCACAATG</gDNA_template>
            <first_frame> G  K  F  L  *  I  C  Y  Q  M  E  G  T  S  C  *  G  *  T  T  D  E  G  V  R  D  D  *  H  F  S  P  G  A  R  T  *  L  L  S  L  S  A  F  C  R  R  E  D  I  R  *  S  Y  *  G  R  G  N  G  G  K  W  H  Q  V  W  K  D  C  K  S  S  C  L  K  S  H  N  T  N  A  S  K  W  F  *  K  Y  W  R  E  E  E  K  G  G  C  G  R  Y  C  I  S  A  *  N  S  C  P  R  *  F  L  T  T  L  F  S  F  P  S  S  T  I  F  C  P  I  H  S  I  S  C  F  *  C  T  T  N  C  T  P  F  L  S  T  M </first_frame>
            <second_frame>  E  N  F  C  E  Y  A  T  R  W  R  E  Q  A  A  R  V  K  P  P  M  K  E  S  E  M  I  D  I  F  L  Q  A  Q  E  P  D  Y  F  H  Y  L  L  S  A  V  G  K  T  F  A  E  V  I  K  V  G  E  M  V  E  N  G  I  K  S  G  K  I  V  S  Q  A  A  L  K  A  T  T  Q  M  L  Q  N  G  S  R  N  I  G  G  K  K  R  R  E  D  V  G  A  I  V  S  A  P  R  T  H  V  Q  G  N  S  S  Q  H  Y  F  P  S  Q  A  P  Q  Y  S  V  P  Y  T  P  Y  H  V  F  N  A  Q  P  I  A  P  P  S  Y  P  Q   </second_frame>
            <third_frame>   K  I  F  V  N  M  L  P  D  G  G  N  K  L  L  G  L  N  H  R  *  R  S  Q  R  *  L  T  F  F  S  R  R  K  N  L  I  T  F  T  I  C  F  L  P  *  G  R  H  S  L  K  L  L  R  *  G  K  W  W  K  M  A  S  S  L  E  R  L  *  V  K  L  P  *  K  P  Q  H  K  C  F  K  M  V  L  E  I  L  E  G  R  R  E  G  R  M  W  A  L  L  Y  Q  R  L  E  L  M  S  K  V  I  P  H  N  T  I  F  L  P  K  L  H  N  I  L  S  H  T  L  H  I  M  F  L  M  H  N  Q  L  H  P  L  L  I  H  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0027B24.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55219" stop="54779"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENFCEYATRWREQAARVKPPMKESEMIDIFLQAQEPDYFHYLLSAVGKTFAEVIKVGEMVENGIKSGKIVSQAALKATTQMLQNGSRNIGGKKRREDVGAIVSAPRTHVQGNSSQHYFPSQAPQYSVPYTPYHVFNAQPIAPPSYPQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="55847" PGL_stop="55433"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55847" e_stop="55433"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="55847" e_stop="55433" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55847" stop="55433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274122" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTAATAAGTAATCCACTTTTCGTGTCAATTGCCCCGACTAACAGCATCCCGCAGCCAACGATGATGCCCAAATCCAACAGCGATCCTCCGCCCAAAGTTCGGCGTGAGCAGAGTTACACTCTTGAAGAGACCATTAAAATTCCAAGTTCTCATCCCCACATTCATCAATATAGTTCCCCTGTTGAAATTGAGAGGATGGTCAAGAATGAGGAACATGAAGAAATGACTAAGAAAATGAAGAGTTTGGAACAGAGTATAAGAGATATGCAAGGACTAGGAGGCCACAAAGGCATCTCGTTCAGTGACTTGTGTATGTTTCCTCACGTCCATTTGCCTGCTGGTTTTAAAACTCCAAAGTTTGAAAAATACGATGGTCACGGAGACCCCATAGCTCATCTAAAGAGATATTGCAAC</gDNA_template>
            <first_frame> C  N  K  *  S  T  F  R  V  N  C  P  D  *  Q  H  P  A  A  N  D  D  A  Q  I  Q  Q  R  S  S  A  Q  S  S  A  *  A  E  L  H  S  *  R  D  H  *  N  S  K  F  S  S  P  H  S  S  I  *  F  P  C  *  N  *  E  D  G  Q  E  *  G  T  *  R  N  D  *  E  N  E  E  F  G  T  E  Y  K  R  Y  A  R  T  R  R  P  Q  R  H  L  V  Q  *  L  V  Y  V  S  S  R  P  F  A  C  W  F  *  N  S  K  V  *  K  I  R  W  S  R  R  P  H  S  S  S  K  E  I  L  Q  </first_frame>
            <second_frame>  V  I  S  N  P  L  F  V  S  I  A  P  T  N  S  I  P  Q  P  T  M  M  P  K  S  N  S  D  P  P  P  K  V  R  R  E  Q  S  Y  T  L  E  E  T  I  K  I  P  S  S  H  P  H  I  H  Q  Y  S  S  P  V  E  I  E  R  M  V  K  N  E  E  H  E  E  M  T  K  K  M  K  S  L  E  Q  S  I  R  D  M  Q  G  L  G  G  H  K  G  I  S  F  S  D  L  C  M  F  P  H  V  H  L  P  A  G  F  K  T  P  K  F  E  K  Y  D  G  H  G  D  P  I  A  H  L  K  R  Y  C  N </second_frame>
            <third_frame>   *  *  V  I  H  F  S  C  Q  L  P  R  L  T  A  S  R  S  Q  R  *  C  P  N  P  T  A  I  L  R  P  K  F  G  V  S  R  V  T  L  L  K  R  P  L  K  F  Q  V  L  I  P  T  F  I  N  I  V  P  L  L  K  L  R  G  W  S  R  M  R  N  M  K  K  *  L  R  K  *  R  V  W  N  R  V  *  E  I  C  K  D  *  E  A  T  K  A  S  R  S  V  T  C  V  C  F  L  T  S  I  C  L  L  V  L  K  L  Q  S  L  K  N  T  M  V  T  E  T  P  *  L  I  *  R  D  I  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0027B24.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55846" stop="55433"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VISNPLFVSIAPTNSIPQPTMMPKSNSDPPPKVRREQSYTLEETIKIPSSHPHIHQYSSPVEIERMVKNEEHEEMTKKMKSLEQSIRDMQGLGGHKGISFSDLCMFPHVHLPAGFKTPKFEKYDGHGDPIAHLKRYCN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="74804" PGL_stop="74325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74804" e_stop="74325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="74804" e_stop="74325" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74804" stop="74567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74803" stop="74325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCAACACAAGAGGAATAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCCTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGGGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTGCTTGTTGATGCTACATGTTGGGTATCATAGTTGAGTTTATGATATTACTTGGTATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTTTTATTTGTGGAGTGCAGCAAACGTGTCGTCGTCTTCGACTCAACAGTAATTCTAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  N  T  R  G  I  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  G  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  A  C  *  C  Y  M  L  G  I  I  V  E  F  M  I  L  L  G  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  S  S  F  Y  L  W  S  A  A  N  V  S  S  S  S  T  Q  Q  *  F  *  P  V  F  V  T  P  D  L  Q  G  E  L  M  L  L  A  W  T </first_frame>
            <second_frame>  H  E  P  T  H  R  F  R  G  S  E  C  H  V  P  T  Q  E  E  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  P  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  L  G  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  D  A  T  C  W  V  S  *  L  S  L  *  Y  Y  L  V  Y  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  L  L  F  I  C  G  V  Q  Q  T  C  R  R  L  R  L  N  S  N  S  S  Q  S  S  S  H  R  I  F  R  V  S  *  C  F  *  L  G   </second_frame>
            <third_frame>   T  N  R  H  I  D  L  G  D  R  S  V  T  Y  Q  H  K  R  N  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  W  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  C  L  L  M  L  H  V  G  Y  H  S  *  V  Y  D  I  T  W  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  F  F  F  L  F  V  E  C  S  K  R  V  V  V  F  D  S  T  V  I  L  A  S  L  R  H  T  G  S  S  G  *  A  N  A  S  S  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0027B24.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74541" stop="74347"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYDITWYILFSILSWPMISTQYPCFVLTPTFMFFFFLFVECSKRVVVFDSTVILASLRHTGSSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="78374" PGL_stop="77640"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78374" e_stop="77640"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78374" e_stop="77640" e_length="735"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78374" stop="77640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352189" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGTTCTTATAAACGTTTTAAAAATTAGTGTGATAGGTTTTTTATTTTATTTTTGCATATTTTTTAAGGTTTTTTTCATGAATTTTCATGGGGGAAGGTGGAATAAGTGGTAGGGCTAAAAAGTGAAGAAGAAGGAAAAAATTGGAAAAAAATCCAAAAAAAAAACCCCATGCGCTCAAAATGGGTACAACACACACAATATGTCAAGTTAGCACAAAGTGTCAAAATGATACAGTGGAACTCAACATGAGGTGTCTAAAATGAACAAAGTTTAATTGAGGTGCCTAAATGAAAATTGATGGCAACTTTAGAGGGCTGCCAATGGGCTGAGCCTGCCTTTTTTAATCGAAGATATTAACAAATTCACATAGACATTCCACAAGAAATACGGGTGGGAACATGAGAGTCATCCAAGAAAAAATATGCATATTGAATGGATGATAAAGAGCAAATATGGAAAATAATGTTGATGAAAGTAAAAATGACCCTTTTTGTAAAATAAATGGACAATTATGTTCGTTTTCCATATAAAATGTATAGTGTATATTTATTTGAGATGAGAAAATTAAAGGAGGAAGGTGGACAAGTGAAGAATGAAGGTGTTATTTTCCATAGCAGATGAAAAAGAATAATATAAAGAATTAGTATTACAAGTTAATTAATTAAGTCCAAAAAGTTCAAAGTAAATTTGCATGAAAAACTTGTCAACAATTTCAACATAAGTGGTGCATGT</gDNA_template>
            <first_frame> N  C  S  Y  K  R  F  K  N  *  C  D  R  F  F  I  L  F  L  H  I  F  *  G  F  F  H  E  F  S  W  G  K  V  E  *  V  V  G  L  K  S  E  E  E  G  K  N  W  K  K  I  Q  K  K  N  P  M  R  S  K  W  V  Q  H  T  Q  Y  V  K  L  A  Q  S  V  K  M  I  Q  W  N  S  T  *  G  V  *  N  E  Q  S  L  I  E  V  P  K  *  K  L  M  A  T  L  E  G  C  Q  W  A  E  P  A  F  F  N  R  R  Y  *  Q  I  H  I  D  I  P  Q  E  I  R  V  G  T  *  E  S  S  K  K  K  Y  A  Y  *  M  D  D  K  E  Q  I  W  K  I  M  L  M  K  V  K  M  T  L  F  V  K  *  M  D  N  Y  V  R  F  P  Y  K  M  Y  S  V  Y  L  F  E  M  R  K  L  K  E  E  G  G  Q  V  K  N  E  G  V  I  F  H  S  R  *  K  R  I  I  *  R  I  S  I  T  S  *  L  I  K  S  K  K  F  K  V  N  L  H  E  K  L  V  N  N  F  N  I  S  G  A  C </first_frame>
            <second_frame>  I  V  L  I  N  V  L  K  I  S  V  I  G  F  L  F  Y  F  C  I  F  F  K  V  F  F  M  N  F  H  G  G  R  W  N  K  W  *  G  *  K  V  K  K  K  E  K  I  G  K  K  S  K  K  K  T  P  C  A  Q  N  G  Y  N  T  H  N  M  S  S  *  H  K  V  S  K  *  Y  S  G  T  Q  H  E  V  S  K  M  N  K  V  *  L  R  C  L  N  E  N  *  W  Q  L  *  R  A  A  N  G  L  S  L  P  F  L  I  E  D  I  N  K  F  T  *  T  F  H  K  K  Y  G  W  E  H  E  S  H  P  R  K  N  M  H  I  E  W  M  I  K  S  K  Y  G  K  *  C  *  *  K  *  K  *  P  F  L  *  N  K  W  T  I  M  F  V  F  H  I  K  C  I  V  Y  I  Y  L  R  *  E  N  *  R  R  K  V  D  K  *  R  M  K  V  L  F  S  I  A  D  E  K  E  *  Y  K  E  L  V  L  Q  V  N  *  L  S  P  K  S  S  K  *  I  C  M  K  N  L  S  T  I  S  T  *  V  V  H   </second_frame>
            <third_frame>   L  F  L  *  T  F  *  K  L  V  *  *  V  F  Y  F  I  F  A  Y  F  L  R  F  F  S  *  I  F  M  G  E  G  G  I  S  G  R  A  K  K  *  R  R  R  K  K  L  E  K  N  P  K  K  K  P  H  A  L  K  M  G  T  T  H  T  I  C  Q  V  S  T  K  C  Q  N  D  T  V  E  L  N  M  R  C  L  K  *  T  K  F  N  *  G  A  *  M  K  I  D  G  N  F  R  G  L  P  M  G  *  A  C  L  F  *  S  K  I  L  T  N  S  H  R  H  S  T  R  N  T  G  G  N  M  R  V  I  Q  E  K  I  C  I  L  N  G  *  *  R  A  N  M  E  N  N  V  D  E  S  K  N  D  P  F  C  K  I  N  G  Q  L  C  S  F  S  I  *  N  V  *  C  I  F  I  *  D  E  K  I  K  G  G  R  W  T  S  E  E  *  R  C  Y  F  P  *  Q  M  K  K  N  N  I  K  N  *  Y  Y  K  L  I  N  *  V  Q  K  V  Q  S  K  F  A  *  K  T  C  Q  Q  F  Q  H  K  W  C  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0027B24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="97342" PGL_stop="87777"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97342" e_stop="96765"/>
            <exon e_start="88023" e_stop="87777"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="97342" e_stop="96765" e_length="578"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96764" i_stop="88024" i_length="8741"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88023" e_stop="87777" e_length="247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97342" stop="96765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97266" stop="96765"/>
              <exon start="88023" stop="87873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97266" stop="96765"/>
              <exon start="88023" stop="87950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97237" stop="96765"/>
              <exon start="88023" stop="87777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97193" stop="96765"/>
              <exon start="88023" stop="87777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97131" stop="96765"/>
              <exon start="88023" stop="87777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396238" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTCATCTTCTAGGAAGGCCTTGCATTACCAAACGACCCGACCCCCTCGCGTTTCTTCTTCACACCAGCTAACCCAGAAATCTCGGTGAACCAGCTGTCCTAAGAGAAAACTGAAATCCAGCAAAAGTCGCGTCCAACAGTACGCCCTCTCTTTCATTTTTCTCAAATTCGGCCGGCTCCAGCTCCAAACGGCGCCAACAGTACGCCTGCAATAACCGCGTCCCGTCCCCTTTTCTCCCCCTTTTGCGAAGTTTTCAGATAAGGGAATGACTCCCCTTTCCTTTTACTGTTGATCTCGAAAAGGAGCAAAGAAAAAATTCAATCTCCTCTTTAAAAAAGTCCAACGGATTTCCCCCATCAAATTTGATCTCAATTTTCTGTAAATAGTCTCTTCTTCACTGTGCTGAGGAAGGGGGCAAGCATAGTAAGAGGTTTTTTGTTTTTAGTGTTTGAATTCCTGAGCAATAGTCATTTCTACACTTCAAAATTTTCGAATTTTCTTAGCTTGCCGTTAGTAGTTGAAGGGAGTGGTGGAATTACTCTTCTCGTCGTCCTAGTATCGTTGCTCCGAGAAAG : GTTGGAGCCGAGTTGAAGGGTAGAAGGCAAGTTTGGGAATCGACTCTCTCAAGACTAAATATGTCCTCATATATTCGAAGGCATAGTCTTTGTTTCTTTAGTTTCTTCTTTTAAGGCTTGTTAAGATTTATTATGTATTTATTTCAATGTGAAAAGGTTGTGTCCCTAAGATATTTATGTCTTGTCTTTAAGTTGGCTTGTGATGACGAGACATATTTCTTAGCTTTTATAAAAAAAGTTTCTTATT</gDNA_template>
            <first_frame> L  F  I  F  *  E  G  L  A  L  P  N  D  P  T  P  S  R  F  F  F  T  P  A  N  P  E  I  S  V  N  Q  L  S  *  E  K  T  E  I  Q  Q  K  S  R  P  T  V  R  P  L  F  H  F  S  Q  I  R  P  A  P  A  P  N  G  A  N  S  T  P  A  I  T  A  S  R  P  L  F  S  P  F  C  E  V  F  R  *  G  N  D  S  P  F  L  L  L  L  I  S  K  R  S  K  E  K  I  Q  S  P  L  *  K  S  P  T  D  F  P  H  Q  I  *  S  Q  F  S  V  N  S  L  F  F  T  V  L  R  K  G  A  S  I  V  R  G  F  L  F  L  V  F  E  F  L  S  N  S  H  F  Y  T  S  K  F  S  N  F  L  S  L  P  L  V  V  E  G  S  G  G  I  T  L  L  V  V  L  V  S  L  L  R  E  R :   L  E  P  S  *  R  V  E  G  K  F  G  N  R  L  S  Q  D  *  I  C  P  H  I  F  E  G  I  V  F  V  S  L  V  S  S  F  K  A  C  *  D  L  L  C  I  Y  F  N  V  K  R  L  C  P  *  D  I  Y  V  L  S  L  S  W  L  V  M  T  R  H  I  S  *  L  L  *  K  K  F  L  I </first_frame>
            <second_frame>  C  S  S  S  R  K  A  L  H  Y  Q  T  T  R  P  P  R  V  S  S  S  H  Q  L  T  Q  K  S  R  *  T  S  C  P  K  R  K  L  K  S  S  K  S  R  V  Q  Q  Y  A  L  S  F  I  F  L  K  F  G  R  L  Q  L  Q  T  A  P  T  V  R  L  Q  *  P  R  P  V  P  F  S  P  P  F  A  K  F  S  D  K  G  M  T  P  L  S  F  Y  C  *  S  R  K  G  A  K  K  K  F  N  L  L  F  K  K  V  Q  R  I  S  P  I  K  F  D  L  N  F  L  *  I  V  S  S  S  L  C  *  G  R  G  Q  A  *  *  E  V  F  C  F  *  C  L  N  S  *  A  I  V  I  S  T  L  Q  N  F  R  I  F  L  A  C  R  *  *  L  K  G  V  V  E  L  L  F  S  S  S  *  Y  R  C  S  E  K   : G  W  S  R  V  E  G  *  K  A  S  L  G  I  D  S  L  K  T  K  Y  V  L  I  Y  S  K  A  *  S  L  F  L  *  F  L  L  L  R  L  V  K  I  Y  Y  V  F  I  S  M  *  K  G  C  V  P  K  I  F  M  S  C  L  *  V  G  L  *  *  R  D  I  F  L  S  F  Y  K  K  S  F  L   </second_frame>
            <third_frame>   V  H  L  L  G  R  P  C  I  T  K  R  P  D  P  L  A  F  L  L  H  T  S  *  P  R  N  L  G  E  P  A  V  L  R  E  N  *  N  P  A  K  V  A  S  N  S  T  P  S  L  S  F  F  S  N  S  A  G  S  S  S  K  R  R  Q  Q  Y  A  C  N  N  R  V  P  S  P  F  L  P  L  L  R  S  F  Q  I  R  E  *  L  P  F  P  F  T  V  D  L  E  K  E  Q  R  K  N  S  I  S  S  L  K  K  S  N  G  F  P  P  S  N  L  I  S  I  F  C  K  *  S  L  L  H  C  A  E  E  G  G  K  H  S  K  R  F  F  V  F  S  V  *  I  P  E  Q  *  S  F  L  H  F  K  I  F  E  F  S  *  L  A  V  S  S  *  R  E  W  W  N  Y  S  S  R  R  P  S  I  V  A  P  R  K  :  V  G  A  E  L  K  G  R  R  Q  V  W  E  S  T  L  S  R  L  N  M  S  S  Y  I  R  R  H  S  L  C  F  F  S  F  F  F  *  G  L  L  R  F  I  M  Y  L  F  Q  C  E  K  V  V  S  L  R  Y  L  C  L  V  F  K  L  A  C  D  D  E  T  Y  F  L  A  F  I  K  K  V  S  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0027B24.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96973" stop="96765"/>
                    <exon start="88023" stop="88008"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQFSVNSLFFTVLRKGASIVRGFLFLVFEFLSNSHFYTSKFSNFLSLPLVVEGSGGITLLVVLVSLLRERLEPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 200 chains have been computed
$ 
$ memory statistics:
$ 48368 bytes spliced alignments in total
$ 22 spliced alignments have been stored
$ 2198 bytes was the average size of a spliced alignment
$ 16264 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1626 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 239 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 15:09:56
-->
