<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 17:38:49"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239997" ref_strand="+" ref_description="SGN-E239997 [cLED-29-D16]">
      <seq>acatgatgatggttctgtgcagaaaatccctgaaattccagatgatcttaaagttatttataagactgtctgggagatcaagcaacggaccctggttgacatggctgtagaccgtggttgctacatagatcagagtcaaagcctcaacatccatatggatcaacccaactttggaaagctcacttcccttcattttcatgcttggtccaggggtttgaaaactggaatgtactatctacgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="906" stop="2066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1206" g_stop="1268" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1269" i_stop="1351" i_length="83">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1352" g_stop="1499" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="211" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1500" i_stop="1733" i_length="234">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1734" g_stop="1766" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="244" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-E239997" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1206" e_stop="1268"/>
          <exon e_start="1352" e_stop="1499"/>
          <exon e_start="1734" e_stop="1766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGATGATGGTTCTGTGCAGAAAATCCCTGAAATTCCAGATGATCTTAAAGTTATTTATAAGTATGAACTTTCACTAATTACTTGTTCAGTTTTTATATACACTTCATTTCCACTTACATTCTAATACTGTTCACTGACTTCAGGACTGTCTGGGAGATCAAGCAACGGACCCTGGTTGACATGGCTGTAGACCGTGGTTGCTACATAGATCAGAGTCAAAGCCTCAACATCCATATGGATCAACCCAACTTTGGAAAGCTCACTTCCCTTCATTTTCATGCTTGGTCCAGGGTACACTTCAATTTTCACATTATAAGTTTTGTTGATCTTTTGAAGAGTGCATAAGCACTAAGAAATGGTCTGGTATATTGTTACTCAATAGTTTAGTACAAACATCCATTTAAAGAGATCTTTTAGCGACTAGTGAATGTAGTTGTCAGACTACAACAGCATGAACAGATCTTTGTAGGTTCCATCTTCACAGGTCAATTTTGAGTCTGAGTTTCATCTTTCTTGTTATTGTAGGGTTTGAAAACTGGAATGTACTATCTACGATCA</genome_strand>
        <mrna_strand>ACATGATGATGGTTCTGTGCAGAAAATCCCTGAAATTCCAGATGATCTTAAAGTTATTTATAA...................................................................................GACTGTCTGGGAGATCAAGCAACGGACCCTGGTTGACATGGCTGTAGACCGTGGTTGCTACATAGATCAGAGTCAAAGCCTCAACATCCATATGGATCAACCCAACTTTGGAAAGCTCACTTCCCTTCATTTTCATGCTTGGTCCAGG..........................................................................................................................................................................................................................................GGTTTGAAAACTGGAATGTACTATCTACGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392213" ref_strand="+" ref_description="SGN-E392213 [TUS-36-C4]">
      <seq>ttcattgttcttgtcaacttttgcaaaaataaacatttcatatatacaaatatacatgtgtaatattgttcactacaaggtggcgaattcgaatgataacaggagtagtagacaagacgatgaagggattaatgtgtttaatacgatgtttcaagggaatattaatagagaagaagaaatgtctgttatggtttctgcattaactcgtgttgttgttggtaatcatcctagtgaaaatatcgaaaatcatcatcaaaataatacattgatttctaggggtgttggagaaaaaagaggacgtgatgaagtattattacatggaactaattcttctcatatgatattatcatcaggtggtgaaggttcaagcattaggacaacaagacaagcaacattcatatacactaggggggggggcaatagcattattgatgaatctgttaataatcaagtaaaacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="17663" stop="19100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17963" g_stop="18315" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18316" i_stop="18692" i_length="377">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18693" g_stop="18800" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="461" r_length="108" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-E392213" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17963" e_stop="18315"/>
          <exon e_start="18693" e_stop="18800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGTTCTTGTCAACTTTTGCAAAAATAAACATTTCATATATACAAATATACATGTGTAATATTGTTCACTACAAGGTGGCGAATTCGAATGATAACAGGAGTAGTAGACAAGACGATGAAGGGATTAATGTGTTTAATACGATGTTTCAAGGGAATATTAATAGAGAAGAAGAAATGTCTGTTATGGTTTCTGCATTAACTCGTGTTGTTGTTGGTAATCATCCTAGTGAAAATATCGAAAATCATCATCAAAATAATACATTGATTTCTAGGGGTGTTGGAGAAAAAAGAGGACGTGATGAAGTATTATTACATGGAACTAATTCTTCTCATATGATATTATCATCAGGTAATTTTATTTTTCTTTCCCTTGATAAGTAATGATCGATGTAAATATAAGATAGTTACGAACTCAAGAGTAAATTTAAACTCCTTATTTTGTGGTTTATTCATTTAGCTATAGCTTAACTTTGACTAATTCAGATTTCGGAAAATCTCAAGTAATCAATCTTTTTATTTATGATGTATATTTACATTTTTAGCACATGTCTACATCTTTTAAATTGTTGCATTTGTCCTTTTGTTTTTATATGGAATGTTTTTGCATATGACAAACAGTCTTTCTATCTCTGATCAGGGATCTAGAATTTTCATTAAGAGATGATGAGTCCATGCATTATATTGAGTATGTTGTTATGGGTATTGATACTAAATTATGTTATATAGGTGGTGAAGGTTCAAGCATTAGGACAACAAGAGAAGCAACATTCATATACACTAATTCAACAAACAATAGCATTATTGATGAATCTGTTAATAATCAAGTAAGACGAC</genome_strand>
        <mrna_strand>TTCATTGTTCTTGTCAACTTTTGCAAAAATAAACATTTCATATATACAAATATACATGTGTAATATTGTTCACTACAAGGTGGCGAATTCGAATGATAACAGGAGTAGTAGACAAGACGATGAAGGGATTAATGTGTTTAATACGATGTTTCAAGGGAATATTAATAGAGAAGAAGAAATGTCTGTTATGGTTTCTGCATTAACTCGTGTTGTTGTTGGTAATCATCCTAGTGAAAATATCGAAAATCATCATCAAAATAATACATTGATTTCTAGGGGTGTTGGAGAAAAAAGAGGACGTGATGAAGTATTATTACATGGAACTAATTCTTCTCATATGATATTATCATCAG.........................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAGGTTCAAGCATTAGGACAACAAGACAAGCAACATTCATATACACTAGGGGGGGGGGCAATAGCATTATTGATGAATCTGTTAATAATCAAGTAAAACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396645" ref_strand="+" ref_description="SGN-E396645 [TUS-43-L4]">
      <seq>ttcattgttcttgtcaacttttgcaaaaataaacatttcatatatacaaatatacatgtgtaatattgttcactacaaggtggcgaattcgaatgataacaggagtagtagacaagacgatgaagggattaatgtgtttaatacgatgtttcaagggaatattaatagagaagaagaaatgtctgttatggtttctgcattaactcgtgttgttgttggtaatcatcctagtgaaaatatcgaaaatcatcatcaaaataatacattgatttctaggggtgttggagaaaaaagaggacgtgatgaagtattattacatggaactaattcttctcatatgatattatcatcaggtggtgaaggttcaagcattaggacaacaagagaagcaacattcatattcactatttcaaccaacaatatcattattgatgagtccgttaataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="17663" stop="19087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17963" g_stop="18315" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18316" i_stop="18692" i_length="377">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18693" g_stop="18787" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="448" r_length="95" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-E396645" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17963" e_stop="18315"/>
          <exon e_start="18693" e_stop="18787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGTTCTTGTCAACTTTTGCAAAAATAAACATTTCATATATACAAATATACATGTGTAATATTGTTCACTACAAGGTGGCGAATTCGAATGATAACAGGAGTAGTAGACAAGACGATGAAGGGATTAATGTGTTTAATACGATGTTTCAAGGGAATATTAATAGAGAAGAAGAAATGTCTGTTATGGTTTCTGCATTAACTCGTGTTGTTGTTGGTAATCATCCTAGTGAAAATATCGAAAATCATCATCAAAATAATACATTGATTTCTAGGGGTGTTGGAGAAAAAAGAGGACGTGATGAAGTATTATTACATGGAACTAATTCTTCTCATATGATATTATCATCAGGTAATTTTATTTTTCTTTCCCTTGATAAGTAATGATCGATGTAAATATAAGATAGTTACGAACTCAAGAGTAAATTTAAACTCCTTATTTTGTGGTTTATTCATTTAGCTATAGCTTAACTTTGACTAATTCAGATTTCGGAAAATCTCAAGTAATCAATCTTTTTATTTATGATGTATATTTACATTTTTAGCACATGTCTACATCTTTTAAATTGTTGCATTTGTCCTTTTGTTTTTATATGGAATGTTTTTGCATATGACAAACAGTCTTTCTATCTCTGATCAGGGATCTAGAATTTTCATTAAGAGATGATGAGTCCATGCATTATATTGAGTATGTTGTTATGGGTATTGATACTAAATTATGTTATATAGGTGGTGAAGGTTCAAGCATTAGGACAACAAGAGAAGCAACATTCATATACACTAATTCAACAAACAATAGCATTATTGATGAATCTGTTAATAAT</genome_strand>
        <mrna_strand>TTCATTGTTCTTGTCAACTTTTGCAAAAATAAACATTTCATATATACAAATATACATGTGTAATATTGTTCACTACAAGGTGGCGAATTCGAATGATAACAGGAGTAGTAGACAAGACGATGAAGGGATTAATGTGTTTAATACGATGTTTCAAGGGAATATTAATAGAGAAGAAGAAATGTCTGTTATGGTTTCTGCATTAACTCGTGTTGTTGTTGGTAATCATCCTAGTGAAAATATCGAAAATCATCATCAAAATAATACATTGATTTCTAGGGGTGTTGGAGAAAAAAGAGGACGTGATGAAGTATTATTACATGGAACTAATTCTTCTCATATGATATTATCATCAG.........................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAGGTTCAAGCATTAGGACAACAAGAGAAGCAACATTCATATTCACTATTTCAACCAACAATATCATTATTGATGAGTCCGTTAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228466" ref_strand="+" ref_description="SGN-E228466 [cLED-3-D1]">
      <seq>tcattgttcttgtcaacttttgcaaaaataaacatttcatatatacaaatatacatgtgtaatattgttcactacaaggtggcgaattcgaatgataacaggagtagtagacaagacgatgaagggattaatgtgtttaatacgatgtttcaagggaatattaatagagaagaagaaatgtctgttatggtttctgcattaactcgtgttgttgttggtaatcatcctagtgaaaatatcgaaaatcatcatcaaaataatacattgatttctaggggtgttggagaaaaaagaggacgtgatgaagtattattacatggaactaattcttctcatatgatattatcatcaggtggtgaaggttcaagcattaggacaacaagagaagcaacattcatatacactaattcaacaaacaatagcattattgatgaatctgttaataatcaagtaagacgacgatacagaggagttagacagaggccatgggggaaatgggcagctgaaataagagatccatataaagcagcgcgtgtttggttaggtacttttgatactgctgaaggggctgctagagcttatgatgaagctgctcttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="17664" stop="19240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17964" g_stop="18315" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18316" i_stop="18692" i_length="377">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18693" g_stop="18940" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="600" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-E228466" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17964" e_stop="18315"/>
          <exon e_start="18693" e_stop="18940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGTTCTTGTCAACTTTTGCAAAAATAAACATTTCATATATACAAATATACATGTGTAATATTGTTCACTACAAGGTGGCGAATTCGAATGATAACAGGAGTAGTAGACAAGACGATGAAGGGATTAATGTGTTTAATACGATGTTTCAAGGGAATATTAATAGAGAAGAAGAAATGTCTGTTATGGTTTCTGCATTAACTCGTGTTGTTGTTGGTAATCATCCTAGTGAAAATATCGAAAATCATCATCAAAATAATACATTGATTTCTAGGGGTGTTGGAGAAAAAAGAGGACGTGATGAAGTATTATTACATGGAACTAATTCTTCTCATATGATATTATCATCAGGTAATTTTATTTTTCTTTCCCTTGATAAGTAATGATCGATGTAAATATAAGATAGTTACGAACTCAAGAGTAAATTTAAACTCCTTATTTTGTGGTTTATTCATTTAGCTATAGCTTAACTTTGACTAATTCAGATTTCGGAAAATCTCAAGTAATCAATCTTTTTATTTATGATGTATATTTACATTTTTAGCACATGTCTACATCTTTTAAATTGTTGCATTTGTCCTTTTGTTTTTATATGGAATGTTTTTGCATATGACAAACAGTCTTTCTATCTCTGATCAGGGATCTAGAATTTTCATTAAGAGATGATGAGTCCATGCATTATATTGAGTATGTTGTTATGGGTATTGATACTAAATTATGTTATATAGGTGGTGAAGGTTCAAGCATTAGGACAACAAGAGAAGCAACATTCATATACACTAATTCAACAAACAATAGCATTATTGATGAATCTGTTAATAATCAAGTAAGACGACGATACAGAGGAGTTAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAATAAGAGATCCATATAAAGCAGCGCGTGTTTGGTTAGGTACTTTTGATACTGCTGAAGGGGCTGCTAGAGCTTATGATGAAGCTGCTCTTACA</genome_strand>
        <mrna_strand>TCATTGTTCTTGTCAACTTTTGCAAAAATAAACATTTCATATATACAAATATACATGTGTAATATTGTTCACTACAAGGTGGCGAATTCGAATGATAACAGGAGTAGTAGACAAGACGATGAAGGGATTAATGTGTTTAATACGATGTTTCAAGGGAATATTAATAGAGAAGAAGAAATGTCTGTTATGGTTTCTGCATTAACTCGTGTTGTTGTTGGTAATCATCCTAGTGAAAATATCGAAAATCATCATCAAAATAATACATTGATTTCTAGGGGTGTTGGAGAAAAAAGAGGACGTGATGAAGTATTATTACATGGAACTAATTCTTCTCATATGATATTATCATCAG.........................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAGGTTCAAGCATTAGGACAACAAGAGAAGCAACATTCATATACACTAATTCAACAAACAATAGCATTATTGATGAATCTGTTAATAATCAAGTAAGACGACGATACAGAGGAGTTAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAATAAGAGATCCATATAAAGCAGCGCGTGTTTGGTTAGGTACTTTTGATACTGCTGAAGGGGCTGCTAGAGCTTATGATGAAGCTGCTCTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241973" ref_strand="+" ref_description="SGN-E241973 [cLED-27-O11]">
      <seq>tcattgttcttgtcaactttggcaaaaataaacatttcatatatacaaatatacatgtgtaatattgttcactacaaggtggcgaattcgaatgataacaggagtagtagacaagacgatgaagggattaatgtgtttaatacgatgtttcaagggaatattaatagagaagaagaaatgtctgttatggtttctgcattaactcgtgttgttgttggtaatcatcctagtgaaaatatcgaaaatcatcatcaaaataatacattgatttctaggggtgttggagaaaaaagaggacgtgatgaagtattattacatggaactaattcttctcatatgatattatcatcaggtggtgaaggttcaagcattaggacaacaagagaagcaacattcatatacactaattcaacaaacaatagcattattgatgaatctgttaataatcaagtaagacgacgatacagaggagttagacagaggccatgggggaaatgggcagctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="17664" stop="19148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17964" g_stop="18315" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18316" i_stop="18692" i_length="377">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18693" g_stop="18848" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="508" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-E241973" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17964" e_stop="18315"/>
          <exon e_start="18693" e_stop="18848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGTTCTTGTCAACTTTTGCAAAAATAAACATTTCATATATACAAATATACATGTGTAATATTGTTCACTACAAGGTGGCGAATTCGAATGATAACAGGAGTAGTAGACAAGACGATGAAGGGATTAATGTGTTTAATACGATGTTTCAAGGGAATATTAATAGAGAAGAAGAAATGTCTGTTATGGTTTCTGCATTAACTCGTGTTGTTGTTGGTAATCATCCTAGTGAAAATATCGAAAATCATCATCAAAATAATACATTGATTTCTAGGGGTGTTGGAGAAAAAAGAGGACGTGATGAAGTATTATTACATGGAACTAATTCTTCTCATATGATATTATCATCAGGTAATTTTATTTTTCTTTCCCTTGATAAGTAATGATCGATGTAAATATAAGATAGTTACGAACTCAAGAGTAAATTTAAACTCCTTATTTTGTGGTTTATTCATTTAGCTATAGCTTAACTTTGACTAATTCAGATTTCGGAAAATCTCAAGTAATCAATCTTTTTATTTATGATGTATATTTACATTTTTAGCACATGTCTACATCTTTTAAATTGTTGCATTTGTCCTTTTGTTTTTATATGGAATGTTTTTGCATATGACAAACAGTCTTTCTATCTCTGATCAGGGATCTAGAATTTTCATTAAGAGATGATGAGTCCATGCATTATATTGAGTATGTTGTTATGGGTATTGATACTAAATTATGTTATATAGGTGGTGAAGGTTCAAGCATTAGGACAACAAGAGAAGCAACATTCATATACACTAATTCAACAAACAATAGCATTATTGATGAATCTGTTAATAATCAAGTAAGACGACGATACAGAGGAGTTAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAA</genome_strand>
        <mrna_strand>TCATTGTTCTTGTCAACTTTGGCAAAAATAAACATTTCATATATACAAATATACATGTGTAATATTGTTCACTACAAGGTGGCGAATTCGAATGATAACAGGAGTAGTAGACAAGACGATGAAGGGATTAATGTGTTTAATACGATGTTTCAAGGGAATATTAATAGAGAAGAAGAAATGTCTGTTATGGTTTCTGCATTAACTCGTGTTGTTGTTGGTAATCATCCTAGTGAAAATATCGAAAATCATCATCAAAATAATACATTGATTTCTAGGGGTGTTGGAGAAAAAAGAGGACGTGATGAAGTATTATTACATGGAACTAATTCTTCTCATATGATATTATCATCAG.........................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAGGTTCAAGCATTAGGACAACAAGAGAAGCAACATTCATATACACTAATTCAACAAACAATAGCATTATTGATGAATCTGTTAATAATCAAGTAAGACGACGATACAGAGGAGTTAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237479" ref_strand="+" ref_description="SGN-E237479 [cLED-19-A20]">
      <seq>tcattgttcttgtcaacttttgcaaaaataaacatttcatatatacaaatatacatgtgtaatattgttcactacaaggtggcgaattcgaatgataacaggagtagtagacaagacgatgaagggattaatgtgtttaatacgatgtttcaagggaatattaatagagaagaagaaatgtctgttatggtttctgcattaactcgtgttgttgttggtaatcatcctagtgaaaatatcgaaaatcatcatcaaaataatacattgatttctaggggtgttggagaaaaaagaggacgtgatgaagtattattacatggaactaattcttctcatatgatattatcatcaggtggtgaaggttcaagcattaggacaacaagagaagcaacattcatatacactaattcaacaaacaatagcattattgatgaatctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="17664" stop="19080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17964" g_stop="18315" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18316" i_stop="18692" i_length="377">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18693" g_stop="18780" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="440" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-E237479" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17964" e_stop="18315"/>
          <exon e_start="18693" e_stop="18780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGTTCTTGTCAACTTTTGCAAAAATAAACATTTCATATATACAAATATACATGTGTAATATTGTTCACTACAAGGTGGCGAATTCGAATGATAACAGGAGTAGTAGACAAGACGATGAAGGGATTAATGTGTTTAATACGATGTTTCAAGGGAATATTAATAGAGAAGAAGAAATGTCTGTTATGGTTTCTGCATTAACTCGTGTTGTTGTTGGTAATCATCCTAGTGAAAATATCGAAAATCATCATCAAAATAATACATTGATTTCTAGGGGTGTTGGAGAAAAAAGAGGACGTGATGAAGTATTATTACATGGAACTAATTCTTCTCATATGATATTATCATCAGGTAATTTTATTTTTCTTTCCCTTGATAAGTAATGATCGATGTAAATATAAGATAGTTACGAACTCAAGAGTAAATTTAAACTCCTTATTTTGTGGTTTATTCATTTAGCTATAGCTTAACTTTGACTAATTCAGATTTCGGAAAATCTCAAGTAATCAATCTTTTTATTTATGATGTATATTTACATTTTTAGCACATGTCTACATCTTTTAAATTGTTGCATTTGTCCTTTTGTTTTTATATGGAATGTTTTTGCATATGACAAACAGTCTTTCTATCTCTGATCAGGGATCTAGAATTTTCATTAAGAGATGATGAGTCCATGCATTATATTGAGTATGTTGTTATGGGTATTGATACTAAATTATGTTATATAGGTGGTGAAGGTTCAAGCATTAGGACAACAAGAGAAGCAACATTCATATACACTAATTCAACAAACAATAGCATTATTGATGAATCTGT</genome_strand>
        <mrna_strand>TCATTGTTCTTGTCAACTTTTGCAAAAATAAACATTTCATATATACAAATATACATGTGTAATATTGTTCACTACAAGGTGGCGAATTCGAATGATAACAGGAGTAGTAGACAAGACGATGAAGGGATTAATGTGTTTAATACGATGTTTCAAGGGAATATTAATAGAGAAGAAGAAATGTCTGTTATGGTTTCTGCATTAACTCGTGTTGTTGTTGGTAATCATCCTAGTGAAAATATCGAAAATCATCATCAAAATAATACATTGATTTCTAGGGGTGTTGGAGAAAAAAGAGGACGTGATGAAGTATTATTACATGGAACTAATTCTTCTCATATGATATTATCATCAG.........................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAGGTTCAAGCATTAGGACAACAAGAGAAGCAACATTCATATACACTAATTCAACAAACAATAGCATTATTGATGAATCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395441" ref_strand="+" ref_description="SGN-E395441 [TUS-16-K10]">
      <seq>cggaaaatctcaagtaatcaatctttttatttatgatgtatatttacatttttagcacatgtctacatcttttaaattgttgcatttgtccttttgtttttatatggaatgtttttgcatatgacaaacagtctttctatctctgatcagggatctagaattttcattaagagatgatgagtccatgcattatattgagtatgttgttatgggtattgatactaaattatgttatataggtggtgaaggttcaagcattaggacaacaagagaagcaacattcatatacactaattcaacaaacaatagcattattgatgaatctgttaataatcaagtaagacgacgatacagaggagttagacagaggccatgggggaaatgggcagctgaaataagagatccatataaagcagcgcgtgtttggttaggtacttttgatactgctgaaggggctgctagagcttatgatgaagctgctcttacatttagaggtagtaaagcaaaactaaatttcccagaaaatgttacattattagtgccttcttcaattcaacaacccatttactcctcacccgacccagccatttctccgtatcgttccaattttattattggacatacctctacggaagtggagcctatacttcacaccaatccttcaattttattgaccctatagctcacacttcatctctgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="18154" stop="19456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18454" g_stop="19156" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-E395441" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18454" e_stop="19156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAAATCTCAAGTAATCAATCTTTTTATTTATGATGTATATTTACATTTTTAGCACATGTCTACATCTTTTAAATTGTTGCATTTGTCCTTTTGTTTTTATATGGAATGTTTTTGCATATGACAAACAGTCTTTCTATCTCTGATCAGGGATCTAGAATTTTCATTAAGAGATGATGAGTCCATGCATTATATTGAGTATGTTGTTATGGGTATTGATACTAAATTATGTTATATAGGTGGTGAAGGTTCAAGCATTAGGACAACAAGAGAAGCAACATTCATATACACTAATTCAACAAACAATAGCATTATTGATGAATCTGTTAATAATCAAGTAAGACGACGATACAGAGGAGTTAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAATAAGAGATCCATATAAAGCAGCGCGTGTTTGGTTAGGTACTTTTGATACTGCTGAAGGGGCTGCTAGAGCTTATGATGAAGCTGCTCTTACATTTAGAGGTAGTAAAGCAAAACTAAATTTCCCAGAAAATGTTACATTATTAGTGCCTTCTTCAATTCAACAACCCATTTACTCCTCACCCGACCCAGCCATTTCTCCGTATCGTTCCAATTTTATTATTGGACATACCTCTACGGAAGTGGAGCCTATACTTCACACCAATCCTTCAAATTTTATTGAGCCTATAGCTCACACTTCATCTCTGTAT</genome_strand>
        <mrna_strand>CGGAAAATCTCAAGTAATCAATCTTTTTATTTATGATGTATATTTACATTTTTAGCACATGTCTACATCTTTTAAATTGTTGCATTTGTCCTTTTGTTTTTATATGGAATGTTTTTGCATATGACAAACAGTCTTTCTATCTCTGATCAGGGATCTAGAATTTTCATTAAGAGATGATGAGTCCATGCATTATATTGAGTATGTTGTTATGGGTATTGATACTAAATTATGTTATATAGGTGGTGAAGGTTCAAGCATTAGGACAACAAGAGAAGCAACATTCATATACACTAATTCAACAAACAATAGCATTATTGATGAATCTGTTAATAATCAAGTAAGACGACGATACAGAGGAGTTAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAATAAGAGATCCATATAAAGCAGCGCGTGTTTGGTTAGGTACTTTTGATACTGCTGAAGGGGCTGCTAGAGCTTATGATGAAGCTGCTCTTACATTTAGAGGTAGTAAAGCAAAACTAAATTTCCCAGAAAATGTTACATTATTAGTGCCTTCTTCAATTCAACAACCCATTTACTCCTCACCCGACCCAGCCATTTCTCCGTATCGTTCCAATTTTATTATTGGACATACCTCTACGGAAGTGGAGCCTATACTTCACACCAATCCTTC-AATTTTATTGACCCTATAGCTCACACTTCATCTCTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206461" ref_strand="+" ref_description="SGN-E206461 [cLEC-23-G14]">
      <seq>ggaaaatctcaagtaatcaatctttttatttatgatgtatatttacatttttagcacatgtctacatcttttaaattgttgcatttgtccttttgtttttatatggaatgtttttgcatatgacaaacagtctttctatctctgatcagggatctagaattttcattaagagatgatgagtccatgcattatattgagtatgttgttatgggtattgatactaaattatgttatataggtggtgaaggttcaagcattaggacaacaagagaagcaacattcatatacactaattcaacaaacaatagcattattgatgaatctgttaataatcaagtaagacgacgatacagaggagttagacagaggccatgggggaaatgggcagctgaaataagagatccatataaagcagcgcgtgtttggttaggtacttttgatactgctgaaggggctgctagagcttatgatgaagctgctcttacatttagaggtagtaaagcaaaactaaatttcccagaaaatgttacattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="18155" stop="19289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18455" g_stop="18989" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-E206461" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18455" e_stop="18989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATCTCAAGTAATCAATCTTTTTATTTATGATGTATATTTACATTTTTAGCACATGTCTACATCTTTTAAATTGTTGCATTTGTCCTTTTGTTTTTATATGGAATGTTTTTGCATATGACAAACAGTCTTTCTATCTCTGATCAGGGATCTAGAATTTTCATTAAGAGATGATGAGTCCATGCATTATATTGAGTATGTTGTTATGGGTATTGATACTAAATTATGTTATATAGGTGGTGAAGGTTCAAGCATTAGGACAACAAGAGAAGCAACATTCATATACACTAATTCAACAAACAATAGCATTATTGATGAATCTGTTAATAATCAAGTAAGACGACGATACAGAGGAGTTAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAATAAGAGATCCATATAAAGCAGCGCGTGTTTGGTTAGGTACTTTTGATACTGCTGAAGGGGCTGCTAGAGCTTATGATGAAGCTGCTCTTACATTTAGAGGTAGTAAAGCAAAACTAAATTTCCCAGAAAATGTTACATTAT</genome_strand>
        <mrna_strand>GGAAAATCTCAAGTAATCAATCTTTTTATTTATGATGTATATTTACATTTTTAGCACATGTCTACATCTTTTAAATTGTTGCATTTGTCCTTTTGTTTTTATATGGAATGTTTTTGCATATGACAAACAGTCTTTCTATCTCTGATCAGGGATCTAGAATTTTCATTAAGAGATGATGAGTCCATGCATTATATTGAGTATGTTGTTATGGGTATTGATACTAAATTATGTTATATAGGTGGTGAAGGTTCAAGCATTAGGACAACAAGAGAAGCAACATTCATATACACTAATTCAACAAACAATAGCATTATTGATGAATCTGTTAATAATCAAGTAAGACGACGATACAGAGGAGTTAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAATAAGAGATCCATATAAAGCAGCGCGTGTTTGGTTAGGTACTTTTGATACTGCTGAAGGGGCTGCTAGAGCTTATGATGAAGCTGCTCTTACATTTAGAGGTAGTAAAGCAAAACTAAATTTCCCAGAAAATGTTACATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395440" ref_strand="+" ref_description="SGN-E395440 [TUS-16-K10](-)">
      <seq>caacaaacaatagcattattgatgaatctgttaataatcaagtaagacgacgatacagaggagttagacagaggccatgggggaaatgggcagctgaaataagagatccatataaagcagcgcgtgtttggttaggtacttttgatactgctgaaggggctgctagagcttatgatgaagctgctcttacatttagaggtagtaaagcaaaactaaatttcccagaaaatgttacattattagtgccttcttcaattcaacaacccatttactcctcacccgacccagccatttctccgtatcgttccaattttattattggacatacctctacggaagtggagcctatacttcacaccaatccttcaaattttattgagcctatagctcacacttcatctctgtatcgttccaattttattgaacggaatcatcacatggtgcagcaggagccgtattttcaggcaggtagtactagtggtggaagtgattttcatcaaactacaaattcttctaattcgtcaatttatgatcacccttcttcttcatctggataatttttgttgtactactagaatatctttttcatcttcctagaagattttgactagctaatagtgatttttcttttaaaggaatgtattggtggccccacataaatgaggtccttttattttcttgcataacagtctttaatttgacttttgttggtattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="18450" stop="19764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18750" g_stop="19475" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-E395440" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18750" e_stop="19475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAACAATAGCATTATTGATGAATCTGTTAATAATCAAGTAAGACGACGATACAGAGGAGTTAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAATAAGAGATCCATATAAAGCAGCGCGTGTTTGGTTAGGTACTTTTGATACTGCTGAAGGGGCTGCTAGAGCTTATGATGAAGCTGCTCTTACATTTAGAGGTAGTAAAGCAAAACTAAATTTCCCAGAAAATGTTACATTATTAGTGCCTTCTTCAATTCAACAACCCATTTACTCCTCACCCGACCCAGCCATTTCTCCGTATCGTTCCAATTTTATTATTGGACATACCTCTACGGAAGTGGAGCCTATACTTCACACCAATCCTTCAAATTTTATTGAGCCTATAGCTCACACTTCATCTCTGTATCGTTCCAATTTTATTGAACGGAATCATCACATGGTGCAGCAGGAGCCGTATTTTCAGGCAGGTAGTACTAGTGGTGGAAGTGATTTTCATCAAACTACAAATTCTTCTAATTCGTCAATTTATGATCACCCTTCTTCTTCATCTGGATAATTTTTGTTGTACTACTAGAATATCTTTTTCATCTTCCTAGAAGATTTTGACTAGCTAATAGTGATTTTTCTTTTAAAGGAATGTATTGGTGGCCCCACATAAATGAGGTCCTTTTATTTTCTTGCATAACAGTCTTTAATTTGACTTTTGTTGGTATTCGTGACGTTTA</genome_strand>
        <mrna_strand>CAACAAACAATAGCATTATTGATGAATCTGTTAATAATCAAGTAAGACGACGATACAGAGGAGTTAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAATAAGAGATCCATATAAAGCAGCGCGTGTTTGGTTAGGTACTTTTGATACTGCTGAAGGGGCTGCTAGAGCTTATGATGAAGCTGCTCTTACATTTAGAGGTAGTAAAGCAAAACTAAATTTCCCAGAAAATGTTACATTATTAGTGCCTTCTTCAATTCAACAACCCATTTACTCCTCACCCGACCCAGCCATTTCTCCGTATCGTTCCAATTTTATTATTGGACATACCTCTACGGAAGTGGAGCCTATACTTCACACCAATCCTTCAAATTTTATTGAGCCTATAGCTCACACTTCATCTCTGTATCGTTCCAATTTTATTGAACGGAATCATCACATGGTGCAGCAGGAGCCGTATTTTCAGGCAGGTAGTACTAGTGGTGGAAGTGATTTTCATCAAACTACAAATTCTTCTAATTCGTCAATTTATGATCACCCTTCTTCTTCATCTGGATAATTTTTGTTGTACTACTAGAATATCTTTTTCATCTTCCTAGAAGATTTTGACTAGCTAATAGTGATTTTTCTTTTAAAGGAATGTATTGGTGGCCCCACATAAATGAGGTCCTTTTATTTTCTTGCATAACAGTCTTTAATTTGACTTTTGTTGGTATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396598" ref_strand="+" ref_description="SGN-E396598 [TUS-43-B13](-)">
      <seq>tttcccagaaaatgttacatcattagtgccttcttcaattcaacaacccatttactcctcacccgacccagccatttctccgtatcgttccaattttattattggacatacctctacggaagtggagcctatacttcacaccaatccttcaaattttattgagcctatagctcacacttcatctctgtatcgttccaattttattgaacggaatcatcacatggtgcagcaggagccgtattttcaggcaggtagtactagtggtggaagtgattttcatcaaactacaaattcttctaattcgtcaatttatgatcacccttcttcttcatctggataatttttgttgtactactagaatatctttttcatcttcctagaagattttgactagctaatagtgatttttcttttaaaggaatgtattggtggccccacataaatgaggtccttttattttcttgcataacagtctttaatttgacttttgttggtattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="18667" stop="19764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18967" g_stop="19475" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-E396598" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18967" e_stop="19475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCCAGAAAATGTTACATTATTAGTGCCTTCTTCAATTCAACAACCCATTTACTCCTCACCCGACCCAGCCATTTCTCCGTATCGTTCCAATTTTATTATTGGACATACCTCTACGGAAGTGGAGCCTATACTTCACACCAATCCTTCAAATTTTATTGAGCCTATAGCTCACACTTCATCTCTGTATCGTTCCAATTTTATTGAACGGAATCATCACATGGTGCAGCAGGAGCCGTATTTTCAGGCAGGTAGTACTAGTGGTGGAAGTGATTTTCATCAAACTACAAATTCTTCTAATTCGTCAATTTATGATCACCCTTCTTCTTCATCTGGATAATTTTTGTTGTACTACTAGAATATCTTTTTCATCTTCCTAGAAGATTTTGACTAGCTAATAGTGATTTTTCTTTTAAAGGAATGTATTGGTGGCCCCACATAAATGAGGTCCTTTTATTTTCTTGCATAACAGTCTTTAATTTGACTTTTGTTGGTATTCGTGACGTTTA</genome_strand>
        <mrna_strand>TTTCCCAGAAAATGTTACATCATTAGTGCCTTCTTCAATTCAACAACCCATTTACTCCTCACCCGACCCAGCCATTTCTCCGTATCGTTCCAATTTTATTATTGGACATACCTCTACGGAAGTGGAGCCTATACTTCACACCAATCCTTCAAATTTTATTGAGCCTATAGCTCACACTTCATCTCTGTATCGTTCCAATTTTATTGAACGGAATCATCACATGGTGCAGCAGGAGCCGTATTTTCAGGCAGGTAGTACTAGTGGTGGAAGTGATTTTCATCAAACTACAAATTCTTCTAATTCGTCAATTTATGATCACCCTTCTTCTTCATCTGGATAATTTTTGTTGTACTACTAGAATATCTTTTTCATCTTCCTAGAAGATTTTGACTAGCTAATAGTGATTTTTCTTTTAAAGGAATGTATTGGTGGCCCCACATAAATGAGGTCCTTTTATTTTCTTGCATAACAGTCTTTAATTTGACTTTTGTTGGTATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396795" ref_strand="+" ref_description="SGN-E396795 [TUS-43-L4](-)">
      <seq>tagtgcctttttcaattcaacaacccatttactcctcacccgacccagccatttttccgtatcgttccaattttattattggacatacctttacggaagtggagcctatacttcacaccaatccttcaaattttattgagcctatagctcacacttcatctttgtatcgttccaattttattgaacggaatcatcacatggtgcagcaggagccgtattttcaggcaggtagtactagtggtggaagtgattttcatcaaactacaaatttttttaattcgtcaatttatgatcacccttttttttcatttggataatttttgttgtactactagaatatttttttcatcttcctagaagattttgactagctaatagtgatttttcttttaaaggaatgtattggtggccccacataaatgaggtccttttattttcttgcataacagtctttaatttgacttttgttggtattaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="18690" stop="19764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18990" g_stop="19465" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="477" polyA_stop="499"/>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-E396795" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18990" e_stop="19465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGCCTTCTTCAATTCAACAACCCATTTACTCCTCACCCGACCCAGCCATTTCTCCGTATCGTTCCAATTTTATTATTGGACATACCTCTACGGAAGTGGAGCCTATACTTCACACCAATCCTTCAAATTTTATTGAGCCTATAGCTCACACTTCATCTCTGTATCGTTCCAATTTTATTGAACGGAATCATCACATGGTGCAGCAGGAGCCGTATTTTCAGGCAGGTAGTACTAGTGGTGGAAGTGATTTTCATCAAACTACAAATTCTTCTAATTCGTCAATTTATGATCACCCTTCTTCTTCATCTGGATAATTTTTGTTGTACTACTAGAATATCTTTTTCATCTTCCTAGAAGATTTTGACTAGCTAATAGTGATTTTTCTTTTAAAGGAATGTATTGGTGGCCCCACATAAATGAGGTCCTTTTATTTTCTTGCATAACAGTCTTTAATTTGACTTTTGTTGGTATTC</genome_strand>
        <mrna_strand>TAGTGCCTTTTTCAATTCAACAACCCATTTACTCCTCACCCGACCCAGCCATTTTTCCGTATCGTTCCAATTTTATTATTGGACATACCTTTACGGAAGTGGAGCCTATACTTCACACCAATCCTTCAAATTTTATTGAGCCTATAGCTCACACTTCATCTTTGTATCGTTCCAATTTTATTGAACGGAATCATCACATGGTGCAGCAGGAGCCGTATTTTCAGGCAGGTAGTACTAGTGGTGGAAGTGATTTTCATCAAACTACAAATTTTTTTAATTCGTCAATTTATGATCACCCTTTTTTTTCATTTGGATAATTTTTGTTGTACTACTAGAATATTTTTTTCATCTTCCTAGAAGATTTTGACTAGCTAATAGTGATTTTTCTTTTAAAGGAATGTATTGGTGGCCCCACATAAATGAGGTCCTTTTATTTTCTTGCATAACAGTCTTTAATTTGACTTTTGTTGGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397891" ref_strand="+" ref_description="SGN-E397891 [TUS-36-C4](-)">
      <seq>ccccccccccctcacccgacccagccatttttccgtttcgttccaattttattattggacatacctctacggaagtggagcctatacttcacaccaatccttcaaattttattgagcctaaagctcacacttcatctctgtatcgttccaattttattgaacggaatcatcacatggtgcagcaggagccgtattttcaggcaggtagtactagtggtggaagtgattttcatcaaactacaaatttttttaattcgtcaatttatgatcaccctttttcttcatctggataatttttgttgtactactagaatatctttttcatcttcctagaagattttgactagctaatagtgatttttcttttaaaggaatgtattggtggccccacataaatgaggtccttttattttctagcataacagtctttaatttgacttttgttggtattaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="18721" stop="19764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19014" g_stop="19465" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="453" polyA_stop="475"/>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-E397891" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19014" e_stop="19465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTACTCCTCACCCGACCCAGCCATTTCTCCGTATCGTTCCAATTTTATTATTGGACATACCTCTACGGAAGTGGAGCCTATACTTCACACCAATCCTTCAAATTTTATTGAGCCTATAGCTCACACTTCATCTCTGTATCGTTCCAATTTTATTGAACGGAATCATCACATGGTGCAGCAGGAGCCGTATTTTCAGGCAGGTAGTACTAGTGGTGGAAGTGATTTTCATCAAACTACAAATTCTTCTAATTCGTCAATTTATGATCACCCTTCTTCTTCATCTGGATAATTTTTGTTGTACTACTAGAATATCTTTTTCATCTTCCTAGAAGATTTTGACTAGCTAATAGTGATTTTTCTTTTAAAGGAATGTATTGGTGGCCCCACATAAATGAGGTCCTTTTATTTTCTTGCATAACAGTCTTTAATTTGACTTTTGTTGGTATTC</genome_strand>
        <mrna_strand>CCCCCCCCCCCTCACCCGACCCAGCCATTTTTCCGTTTCGTTCCAATTTTATTATTGGACATACCTCTACGGAAGTGGAGCCTATACTTCACACCAATCCTTCAAATTTTATTGAGCCTAAAGCTCACACTTCATCTCTGTATCGTTCCAATTTTATTGAACGGAATCATCACATGGTGCAGCAGGAGCCGTATTTTCAGGCAGGTAGTACTAGTGGTGGAAGTGATTTTCATCAAACTACAAATTTTTTTAATTCGTCAATTTATGATCACCCTTTTTCTTCATCTGGATAATTTTTGTTGTACTACTAGAATATCTTTTTCATCTTCCTAGAAGATTTTGACTAGCTAATAGTGATTTTTCTTTTAAAGGAATGTATTGGTGGCCCCACATAAATGAGGTCCTTTTATTTTCTAGCATAACAGTCTTTAATTTGACTTTTGTTGGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226086" ref_strand="+" ref_description="SGN-E226086 [cLEL-31-O23](-)">
      <seq>tgtcgaaaagagttgccaccagatccacaaagaaacaatggtgcacaaagctgctttaaaggcttagaagactttgatcggacaactctactggtaggagccaagccgagcctcacatcaattatagcaattccggtctggacgttcattgtgacaaagttgaaatcctttttgcagtactctctattctgagaaacaagcaacaagagcaaaaactcgcaaatcttgattcctctgcctgtactatcacgatttgcctgcttgcttttctcgttgtcggagtttcattttcttcccccattttgtatctttatctgacgtttctccgcatgatttattcattgtgatcagcaaaaatttaggtttgatgccaagagatcagagatgtcaagttccattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="29907" stop="748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29607" g_stop="29208" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29207" i_stop="28523" i_length="685">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28522" g_stop="28507" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="416" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E226086" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29607" e_stop="29208"/>
          <exon e_start="28522" e_stop="28507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAAGAGATCAGAGATGTCAAGTTCCATTAATTGCTTATTTACTCATCATCACATTCATTAGCGCTGTAGTTTTATTTTGTAATGCATCCTTCTTTAGGGGTTAGCAAAAGGAAAATGGCTTTCTTTTCCCCTTTTAAAATGATCTCTACCTTTGCGTTATCTGTGTGAAAAATATGTGTTTTGAAAATAATACCTAGATCGGTATCGATGGGGTTTACATGCCACTGTAAATCATGGATTGTTTTAGACTACAAAGTTTTTCGATGATTTTCGTTTTTCAAAAAAGCTGTTATGCCAAGTCAAACATCATATAATGTCAAAGGGCCTTTTTGGATTGTAAATGTGGTTGTGGAAACATTTGGAAAAAAAAAGATTAGTGTTAGGTGTGTTTATGAAAATGTTTCAATATGTGGCGTCTTTTGATATTTCGATTATCTTATTAATGAGCTATTTGTCAATAATTTTCATAAATGATGAGGATTTTAGGTTTATTCAATGAGGTTCGAAAAGTATAGTTGGTGAGGTTTAGAGAGTGCAGAGGAAGCAAGTAACACTGCTACGTTGGAACTCTTTCTCATGATTCGTTATTAGGAATAGTTCTGTACTTGTTCGCTACCTTAACCAAAATATTTTCACATAACCATTACTAACACAAAGTTAACAATTATTACAGTTTGTTAACTTATAATAAATTACGAAGACTCATCAATGCAAAAAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>TGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAAGAGATCAGAGATGTCAAGTTCCATTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226182" ref_strand="+" ref_description="SGN-E226182 [cLEL-31-O23](-)">
      <seq>gttgccaccagatccacaaagaaacaatggtgcacaaagctgctttaaaggcttagaagactttgatcggacaactctactggtaggagccaagccgagcctcacatcaattatagcaattccggtctggacgttcattgtgacaaagttgaaatcctttttgcagtactctctattctgagaaacaagcaacaagagcaaaaactcgcaaatcttgattcctctgcctgtactatcacgatttgcctgcttgcttttctcgttgtcggagtttcattttcttcccccattttgtatctttatctgacgtttctccgcatgatttattcattgtgatcagcaaaaatttaggtttgatgccaagagatcagagatgtcaagttccattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="29896" stop="748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29596" g_stop="29208" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29207" i_stop="28523" i_length="685">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28522" g_stop="28507" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="405" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E226182" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29596" e_stop="29208"/>
          <exon e_start="28522" e_stop="28507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAAGAGATCAGAGATGTCAAGTTCCATTAATTGCTTATTTACTCATCATCACATTCATTAGCGCTGTAGTTTTATTTTGTAATGCATCCTTCTTTAGGGGTTAGCAAAAGGAAAATGGCTTTCTTTTCCCCTTTTAAAATGATCTCTACCTTTGCGTTATCTGTGTGAAAAATATGTGTTTTGAAAATAATACCTAGATCGGTATCGATGGGGTTTACATGCCACTGTAAATCATGGATTGTTTTAGACTACAAAGTTTTTCGATGATTTTCGTTTTTCAAAAAAGCTGTTATGCCAAGTCAAACATCATATAATGTCAAAGGGCCTTTTTGGATTGTAAATGTGGTTGTGGAAACATTTGGAAAAAAAAAGATTAGTGTTAGGTGTGTTTATGAAAATGTTTCAATATGTGGCGTCTTTTGATATTTCGATTATCTTATTAATGAGCTATTTGTCAATAATTTTCATAAATGATGAGGATTTTAGGTTTATTCAATGAGGTTCGAAAAGTATAGTTGGTGAGGTTTAGAGAGTGCAGAGGAAGCAAGTAACACTGCTACGTTGGAACTCTTTCTCATGATTCGTTATTAGGAATAGTTCTGTACTTGTTCGCTACCTTAACCAAAATATTTTCACATAACCATTACTAACACAAAGTTAACAATTATTACAGTTTGTTAACTTATAATAAATTACGAAGACTCATCAATGCAAAAAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>GTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAAGAGATCAGAGATGTCAAGTTCCATTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353157" ref_strand="+" ref_description="SGN-E353157 [cTOS-14-K23]">
      <seq>aaatggttgtatcaaaagctttggttgctaaaatagacagacctatgggtattgtctgtttccaacccccaaaagacagcaatgatatcttgaattcttgggcgtctaatttggagaagctgcttgaccttgtcgaaaagagttgccaccagatccacaaagaaacaatggtgcacaaagctgctttaaaggcttagaagactttgatcggacaactctactggtaggagccaagccgagcctcacatcaattatagcaattccggtctggacgttcattgtgacaaagttgaaatcctttttgcagtactctctattctgagaaacaagcaacaagagcaaaaactcgcaaatcttgattcctctgcctgtactatcacgatttgcctgcttgcttttctcgttgtcggagtttcattttcttcccccattttgtatctttatctgacgtttctccgcatgatttattcattgtgatcagcaaaaatttaggtttgatgccaagagatcagagatgtcaagttccattaattgcttatttactcatcatcacattcattagcgctgtagttttattttgtaatgcatccttctttaggggttagcaaaaggaaaatggctttcttttccccttttaaaatgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="30037" stop="28795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29737" g_stop="29096" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E353157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29737" e_stop="29096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAAGAGATCAGAGATGTCAAGTTCCATTAATTGCTTATTTACTCATCATCACATTCATTAGCGCTGTAGTTTTATTTTGTAATGCATCCTTCTTTAGGGGTTAGCAAAAGGAAAATGGCTTTCTTTTCCCCTTTTAAAATG</genome_strand>
        <mrna_strand>AAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAAGAGATCAGAGATGTCAAGTTCCATTAATTGCTTATTTACTCATCATCACATTCATTAGCGCTGTAGTTTTATTTTGTAATGCATCCTTCTTTAGGGGTTAGCAAAAGGAAAATGGCTTTCTTTTCCCCTTTTAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350888" ref_strand="+" ref_description="SGN-E350888 [cTOS-7-M18]">
      <seq>tgaaatggttgtatcaaaagctttggttgctaaaatagacagacctatgggtattgtctgtttccaacccccaaaagacagcaatgatatcttgaattcttgggcgtctaatttggagaagctgcttgaccttgtcgaaaagagttgccaccagatccacaaagaaacaatggtgcacaaagctgctttaaaggcttagaagactttgatcggacaactctactggtaggagccaagccgagcctcacatcaattatagcaattccggtctggacgttcattgtgacaaagttgaaatcctttttgcagtactctctattctgagaaacaagcaacaagagcaaaaactcgcaaatcttgattcctctgcctgtactatcacgatttgcctgcttgcttttctcgttgtcggagtttcattttcttcccccattttgtatctttatctgacgtttctccgcatgatttattcattgtgatcagcaaaaatttaaggttgatgccaagagatcagagatgtcaagttccattaattgcttatttactcatcatcacattcattagcgctgtagttttattttggtatgcatccttctttaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="30039" stop="28838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29739" g_stop="29138" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E350888" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29739" e_stop="29138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAAGAGATCAGAGATGTCAAGTTCCATTAATTGCTTATTTACTCATCATCACATTCATTAGCGCTGTAGTTTTATTTTGTAATGCATCCTTCTTTAGGG</genome_strand>
        <mrna_strand>TGAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAAGGTTGATGCCAAGAGATCAGAGATGTCAAGTTCCATTAATTGCTTATTTACTCATCATCACATTCATTAGCGCTGTAGTTTTATTTTGGTATGCATCCTTCTTTAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309658" ref_strand="+" ref_description="SGN-E309658 [cLEY-26-L8]">
      <seq>ccaagccgagcctcacatcaattatagcaattccggtctggacgttcattgtgacaaagttgaaatcctttttgcagtactctctattctgagaaacaagcaacaagagcaaaaactcgcaaatcttgattcctctgcctgtactatcacgatttgcctgcttgcttttctcgttgtcggagtttcattttcttcccccattttgtatctttatctgacgtttctccgcatgatttattcattgtgatcagcaaaaatttaggtttgatgccaagagatcagagatgtcaagttccattnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="29807" stop="28907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29507" g_stop="29208" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="301" polyA_stop="315"/>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E309658" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29507" e_stop="29208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAAGAGATCAGAGATGTCAAGTTCCATTA</genome_strand>
        <mrna_strand>CCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAAGAGATCAGAGATGTCAAGTTCCATTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308342" ref_strand="+" ref_description="SGN-E308342 [cLEY-25-C19]">
      <seq>atggtgcacaaagctgctttaaaggcttagaagactttgatcggacaacggtactggtaggagccaagccgagcctcacatcaattatagcaattccggtctggacgttcattgtgacaaagttgaaatcctttttgcagtactctctattctgagaaacaagcaacaagagcaaaaactcgcaaatcttgattcctctgcctgtactatcacgatttgcctgcttgcttttctcgttgtcggagtttcattttcttcccccattttgtatctttatctgacgtttctccgcatgatttattcattgtgatcagcaaaaatttaggtttgatgccnagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="29870" stop="28923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29570" g_stop="29220" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E308342" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29570" e_stop="29220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAAGAGATCAGAGATGT</genome_strand>
        <mrna_strand>ATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACGGTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCNAGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373300" ref_strand="-" ref_description="SGN-E373300 [TUS-31-P21]">
      <seq>ggctggctgttttactgtgcctcgatattcaggaagcggagaagcacctatttgaaatggtggtatcaaaagctttggttgctaaaatagacagacctatgggtattgtctgtttccaacccccaaaagacagcaataatatcttgaattcttgggcgtttaatttggaaaagctgcttgaccttgtcgaaaaaagttgccaccaaatccacaaaaaaacaatggtgcacaaaactgcttaaaaggcttaaaagactttgatcggacaactttactggtagaagccaaaccgagcctcacatcaattatagcaattccggtttggacgttcattgtgaaaaagttgaaatcctttttgcagtactttctattttaaaaaacaagcaacaaaagcaaaaactcgcaaattttgattcctctgcctgtacaatcacgatttgcctgcttgcttttttcgttgttggagtttcatttttttcccccattttgaatttttatttgacgtttttccgcatgatttattcattgtgatcagcaaaaatttaggtttgatgccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="30668" stop="28203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30368" g_stop="30337" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30336" i_stop="29760" i_length="577">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29759" g_stop="29234" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="558" r_length="526" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="559" polyA_stop="595"/>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E373300" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373300" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30368" e_stop="30337"/>
          <exon e_start="29759" e_stop="29234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGGCTGTTTTACTGTGCCTCGATATTCAGGTGCATGTTTAGTTTATTACTTTTCCTAATTTGTTTAGAGTATTGTGTACAATACCTACATGTTTTACTTCATCTTTGGTGGTATTTAGAGAGTTCCTGCTATGATTAAGTGAATGTGGTCTAAACCTTAGTGCAAAGGCCGAGGGCCACTGTAAGTCTTGGGGTCTCTCTGTGCCTTGCAGCAATATAACTTTGTGCTTGTGAAAAACATTAGCTGTTAGATTTGTCAATTCAGATCTGGTTCATTATAGTTAAGATCCTTGGTCTGGCTCTTGCTGATGGCGGGAAATTTGCTATACCTTTGCACTAAAATAGTAAAGAAGGTAAACTGTGTGAAAAAGAAAAAAATGTTGTAGACAACTCAGTGGAGAGTTGCTGGATGTTCCCAATTTTTACCTTCTGTGCACAAACTTTCAAATGTTGGAACTGAAATCATAATCAGCATTCTATTTTCTCTTCATCATTACTGAGCACCATTTGTCTAGATGTTGCAACTGTCACATAATTGTTTTACCTCTCATAGCATACATTTGTCTGGTGATTTCTGATCTTCTTTTCTTTTTTCTTTTTTTTTCAGGAAGCGGAGAAGCACCTATCTGAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAA</genome_strand>
        <mrna_strand>GGCTGGCTGTTTTACTGTGCCTCGATATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGGAGAAGCACCTATTTGAAATGGTGGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATAATATCTTGAATTCTTGGGCGTTTAATTTGGAAAAGCTGCTTGACCTTGTCGAAAAAAGTTGCCACCAAATCCACAAAAAAACAATGGTGCACAAAACTGCTTAAAAGGCTTAAAAGACTTTGATCGGACAACTTTACTGGTAGAAGCCAAACCGAGCCTCACATCAATTATAGCAATTCCGGTTTGGACGTTCATTGTGAAAAAGTTGAAATCCTTTTTGCAGTACTTTCTATTTTAAAAAACAAGCAACAAAAGCAAAAACTCGCAAATTTTGATTCCTCTGCCTGTACAATCACGATTTGCCTGCTTGCTTTTTTCGTTGTTGGAGTTTCATTTTTTTCCCCCATTTTGAATTTTTATTTGACGTTTTTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292243" ref_strand="-" ref_description="SGN-E292243 [cLET-1-J6]">
      <seq>gaaatggttgtatcaaaagctttggttgctaaaatagacagacctatgggtattgtctgtttccaacccccaaaagacagcaatgatatcttgaattcttgggcgtctaatttggagaagctgcttgaccttgtcgaaaagagttgccaccagatccacaaagaaacaatggtgcacaaagctgctttaaaggcttagaagactttgatcggacaactctactggtaggagccaagccgagcctcacatcaattatagcaattccggtctggacgttcattgtgacaaagttgaaatcctttttgcagtactctctattttgagaaacaagcaacaagagcaaaaactcgcaaatcttgattcctcggcctggactatcacgatttgcctgcttgcttttctcgttgtcggagtttcattttcttcccccattttgtatctttatctgacgtttctccgcatgatttattcattgtgatcagcaaaaatttaggtttgatgccaaaaaaaaaaaaaaaaaaactatatatataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="30038" stop="28193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29738" g_stop="29234" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="506" polyA_stop="523"/>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E292243" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292243" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29738" e_stop="29234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAA</genome_strand>
        <mrna_strand>GAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTTTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCGGCCTGGACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434365" ref_strand="+" ref_description="SGN-E434365 [STM-59-H4]">
      <seq>catccttgtcgtctcaaaatactactcgagaataaccttgaagagactggcagttttattgtgcctcgatattcaggaagcggagaagcacctatctgaaatggttgtgtcaaaagctttggttgctaagatagacagacctatgggtattgtctgtttccaacccccaaaagacagcaatgacatcttgaattcttgggcttctaatttggagaagctgcttgaccttgtcgaaaagagttgccaccagatccacaaagaaacaatggtgcacaaagctgcactaaaggcttagaagactttggatcggacaactctacagtactctattctgaggaacaagcaacaggagcaaaaactcgcaaatcttgattcctctgcctgtactatcacgatttgcctgcttgcttttctcgttggtgtcggagtttcattttcttcccccattttgtatctttatcgatgttttctccgcatgatttattcattgtggccagcaaaaatttagggttgatgatgctaaatgtcaacttccattaatgctttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="30712" stop="28938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30412" g_stop="30337" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30336" i_stop="29760" i_length="577">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29759" g_stop="29515" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="322" r_length="246" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29514" i_stop="29431" i_length="84">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29430" g_stop="29239" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="515" r_length="193" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E434365" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30412" e_stop="30337"/>
          <exon e_start="29759" e_stop="29515"/>
          <exon e_start="29430" e_stop="29239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAGGTGCATGTTTAGTTTATTACTTTTCCTAATTTGTTTAGAGTATTGTGTACAATACCTACATGTTTTACTTCATCTTTGGTGGTATTTAGAGAGTTCCTGCTATGATTAAGTGAATGTGGTCTAAACCTTAGTGCAAAGGCCGAGGGCCACTGTAAGTCTTGGGGTCTCTCTGTGCCTTGCAGCAATATAACTTTGTGCTTGTGAAAAACATTAGCTGTTAGATTTGTCAATTCAGATCTGGTTCATTATAGTTAAGATCCTTGGTCTGGCTCTTGCTGATGGCGGGAAATTTGCTATACCTTTGCACTAAAATAGTAAAGAAGGTAAACTGTGTGAAAAAGAAAAAAATGTTGTAGACAACTCAGTGGAGAGTTGCTGGATGTTCCCAATTTTTACCTTCTGTGCACAAACTTTCAAATGTTGGAACTGAAATCATAATCAGCATTCTATTTTCTCTTCATCATTACTGAGCACCATTTGTCTAGATGTTGCAACTGTCACATAATTGTTTTACCTCTCATAGCATACATTTGTCTGGTGATTTCTGATCTTCTTTTCTTTTTTCTTTTTTTTTCAGGAAGCGGAGAAGCACCTATCTGAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTT-GATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCG-T--TGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACG-TTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGAT</genome_strand>
        <mrna_strand>CATCCTTGTCGTCTCAAAATACTACTCGAGAATAACCTTGAAGAGACTGGCAGTTTTATTGTGCCTCGATATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGGAGAAGCACCTATCTGAAATGGTTGTGTCAAAAGCTTTGGTTGCTAAGATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGACATCTTGAATTCTTGGGCTTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCACTAAAGGCTTAGAAGACTTTGGATCGGACAACTCTACAG....................................................................................TA--CTCTATTCTGAGGAACAAGCAACAGGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGGTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATC-GATGTTTTCTCCGCATGATTTATTCATTGTGGCCAGCAAAAATTTAGGGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430088" ref_strand="-" ref_description="SGN-E430088 [STM-53-I17]">
      <seq>gaaatggttgtgtcaaaagctttgattgctaagatagacagacctatgggtattgtctgtttccaacccccaaaagacagcaatgacatcttgaattcttgggcttctaatttggagaagctgcttgaccttgtcgaaaagagttgccaccagatccacaaagaaacaatggtgcacaaagctgcactaaaggcttagaagactttggatcggacaactctacaggtagagccaagccgatacttgcatcaattatagcaattctggtctggacgttcattgtgacaaagttgaaatcctttttgcagtactctattctgaggaacaagcaacaggagcaaaaactcgcaaatcttgattcctctgcctgtactatcacgatttgtctgcttgcttttctccttgttgtcggagtttcattttcttcccccattttgtatctttatcgatgttttctccgcatgatttattcattgtggccagcaaaaatttaggtttgatgctaaacgtcaacttccattaatgcttatttactcatttaacacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="30038" stop="29029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29738" g_stop="29239" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="546" polyA_stop="555"/>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E430088" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430088" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29738" e_stop="29239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTT-GATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCT-C--GTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACG-TTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGAT</genome_strand>
        <mrna_strand>GAAATGGTTGTGTCAAAAGCTTTGATTGCTAAGATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGACATCTTGAATTCTTGGGCTTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCACTAAAGGCTTAGAAGACTTTGGATCGGACAACTCTACAGGTA-GAGCCAAGCCGATACTTGCATCAATTATAGCAATTCTGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTA--CTCTATTCTGAGGAACAAGCAACAGGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGTCTGCTTGCTTTTCTCCTTGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATC-GATGTTTTCTCCGCATGATTTATTCATTGTGGCCAGCAAAAATTTAGGTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410372" ref_strand="+" ref_description="SGN-E410372 [PPI-16-H18]">
      <seq>gttctgaggaaaatttgctggtacttggtattgtctccccatgattctatgcaatcaagtcttcataactcaactttagaggacaaaaatctttcagaaattcctcatttcaggctgcttctgaagcaattgattaccatggaggtcattcagtggactgctttatggaacacattcaaggatgagtttgaaaatgagaagaatatgcctggtggcactttgggggacaaggctgctgaagatctcaaactgagagttattgagcataacatccttgtcgtctcaaaatactactcgagaataaccttgaagagactggcagttttattgtgcctcgatattcaggaagcggagaagcacctatctgaaatggttgtgtcaaaagctttgattgctaagatagacagacctatgggtattgtctgtttccaacccccaaaagacagcaatgacatcttgaattcttgggcttctaatttggagaagctgcttgaccttgtcgaaaagagttgccaccagatccacaaagaaacaatggtgcacaaagctgcactaaaggcttagaagactttggatcggacaactctacagtactctattctgaggaacaagcaacaggagcaaaaactcgcaaatcttgattcctctgcctgtactatcacgatttgtctgcttgcttttctccttgttgtcggagtttcattttcttcccccattttgtatctttatcgatgttttctccgcatgatttattcattgtggccagcaaaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="32003" stop="28948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31703" g_stop="31591" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31590" i_stop="30678" i_length="913">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30677" g_stop="30524" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="267" r_length="154" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30523" i_stop="30415" i_length="109">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30414" g_stop="30337" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="345" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30336" i_stop="29760" i_length="577">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29759" g_stop="29515" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="591" r_length="246" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29514" i_stop="29431" i_length="84">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29430" g_stop="29248" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="775" r_length="184" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E410372" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31703" e_stop="31591"/>
          <exon e_start="30677" e_stop="30524"/>
          <exon e_start="30414" e_stop="30337"/>
          <exon e_start="29759" e_stop="29515"/>
          <exon e_start="29430" e_stop="29248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAGGTTTTGTGCAAAAAACTCTATTGCACTATGTTTACTGTTGCTACTTGTAAAATAAAGGAAAAAAGTAATAACTATGTTTATGGTGTTATTATCTTTGCATTTGTATATTTGGGTTTGTGGGGTAAGATTTCTCAAAATTTTGCCAATTGACATAAACTCTGCTTGGAAATTATTTCATTCTGTGTGTGGTTATATGTCATTTGATGATGAATATTTTGTACTTCCTTTGGAACAAGTTGAAGTTTATATAGCAATTTCTATTTTGGGACATCAAGGATGTTTGCCACCTGTCCATCAACAATATTGTTCTGCATCTTTCAGAAATTTCAAGAATCTTAAGTTTTTTACTATCTTCACAAATTCATCCAATGTATCCGTGACAGACTAGCTTTGAGAAACTGTCTTAGTAATTTCTTTGATTACTAATGACCAATATAGTAGAAATGTCAACTGAGCCATCTTACACTTCCTCCCTAGTCAAATCCTATCACACAATTAATTGGCTGGAGTATTAGAGTTCTAGTCTGGTTCATCGGGCTTTGCATTGTTGCAATGTTTGCGTATTTGATATGAGTCTTGCATGTTAAGGCTGAAGGAGATTAGAGTTATTCAATGATTAATGGATCTTTGAAGTCCTTATTTTCTTAAACTAACATTTTGAAAATTGAAACTCTAAACAGAAATATCAAGTAATGAGTGTATATATAACCTTATTCTACTACCTGACTAACTTATATAGTCTCGTTTATTTCAATATAAATGTGGAATTTTGCATGCTCAGAAGGAAACATTTCTTATCTTTTATCCAACGACTGTTTTTTCAGAAATTTACAATTTTCTCCACCCTCTACACTAGAGGGGAACCAACTTCAGAATAATGATTGTTTTGGTATCTTCCTTTTTTTTGCTTCAGGCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCACGTAATATCTAAGGGCTCACTTTTAGTTCTCCTGTTTGATGATTTGTCATAATGGCGTCCATTTTCCTCTTGAATTGTGCTTTAACTTTTAAGTACTATTTTCCTTGCAGAACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAGGTGCATGTTTAGTTTATTACTTTTCCTAATTTGTTTAGAGTATTGTGTACAATACCTACATGTTTTACTTCATCTTTGGTGGTATTTAGAGAGTTCCTGCTATGATTAAGTGAATGTGGTCTAAACCTTAGTGCAAAGGCCGAGGGCCACTGTAAGTCTTGGGGTCTCTCTGTGCCTTGCAGCAATATAACTTTGTGCTTGTGAAAAACATTAGCTGTTAGATTTGTCAATTCAGATCTGGTTCATTATAGTTAAGATCCTTGGTCTGGCTCTTGCTGATGGCGGGAAATTTGCTATACCTTTGCACTAAAATAGTAAAGAAGGTAAACTGTGTGAAAAAGAAAAAAATGTTGTAGACAACTCAGTGGAGAGTTGCTGGATGTTCCCAATTTTTACCTTCTGTGCACAAACTTTCAAATGTTGGAACTGAAATCATAATCAGCATTCTATTTTCTCTTCATCATTACTGAGCACCATTTGTCTAGATGTTGCAACTGTCACATAATTGTTTTACCTCTCATAGCATACATTTGTCTGGTGATTTCTGATCTTCTTTTCTTTTTTCTTTTTTTTTCAGGAAGCGGAGAAGCACCTATCTGAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTT-GATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCT-C--GTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTT</genome_strand>
        <mrna_strand>GTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTAGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTCTGAAGCAATTGATTACCATGGAGGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGATCTCAAACTGAGAGTTATTGAGCAT.............................................................................................................AACATCCTTGTCGTCTCAAAATACTACTCGAGAATAACCTTGAAGAGACTGGCAGTTTTATTGTGCCTCGATATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGGAGAAGCACCTATCTGAAATGGTTGTGTCAAAAGCTTTGATTGCTAAGATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGACATCTTGAATTCTTGGGCTTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCACTAAAGGCTTAGAAGACTTTGGATCGGACAACTCTACAG....................................................................................TA--CTCTATTCTGAGGAACAAGCAACAGGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGTCTGCTTGCTTTTCTCCTTGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCGATGTTTTCTCCGCATGATTTATTCATTGTGGCCAGCAAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340265" ref_strand="+" ref_description="SGN-E340265 [cTOF-2-J16]">
      <seq>tctctctcttttagggtttctgagaatcgatctcaatcgaactccgaaaaaaactcaataatcaatatggaaggtgatgggaaattggaggcgcaaattgaggtgcttctgaatgtagagaagcagatgaggcaagctggcgatgtcgctgctactagaaaagcagctatagacattcttcagctttgcttcgaagctcgcgcatggaaaactttaaatgaacagattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggtccaacaggccatgcaatacattgaccagacgcccgatcttgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaaaaactcataggcgaggctgctgatttgatgcaagaagttgctgttgaaacctttggagcgatggcaaaaactgaaaagatagcctttattcttgaacaagttcgtctatgcaaagaaacaatggtgcacaaagctgctttaaaggcttagaagactttgatcggacaactctactggtaggagccaagccgagcctcacatcaattatagcaattccggtctggacgttcattgtgacaaagttgaaatcctttttgcagtactctctattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38220" stop="29117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37920" g_stop="37852" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="264" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="372" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="477" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="534" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34548" g_stop="34537" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="546" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34536" i_stop="29580" i_length="4957">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29579" g_stop="29417" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="709" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E340265" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37920" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34537"/>
          <exon e_start="29579" e_stop="29417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTTTTAGGGTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAGGTACATCTGATTATGTTATAAATGTGGCTAAGCAAGTTACCTTCTCTAGAATTGTTGAATGCAACACCCTTCTTACTATCAAGCATTCAGCAGATTCATGCAATCCGAGTATAATTTTAAAATAACGTAATTTATTTTCTTAAGATAACTTGGAATAGTTAATGTGTTCATACTTAAAGCTTGCAACTTCTGCACTTAGTTTTGGTGATTTGTGCAGTATCGGGACTGAAGATATTAGTATTTAAGGCACATAATTTGCTTATTTGCTCATTTTCTGGCAGTTTGTCTACATCTTACTTACATTTGAGTTTGGGTTAGACATGTTTTCTGAATAAAGATTCTGATTGTCTTCATTTTATATATGTTTTAGTTGTCTTTGAGGATTCTAGTTTCCTCCCCTTATCAACTGTGCCAAAGGATTAAAGTGAATGTTATCTGTGCTTTGTCAGAAATGTTTGTTTTTAGTAGAAACTTCATATTTTTTCCGGAAGAGATTATACACCTTGGATGTCATTGAATAAATAGAGACTGAAGTAAGTTCTGCAGAGCTCCATGTTTGAGATAGTTCCATATTTGCTCTGTTTGCTTTGGTTTATTTGTGGATGGACTTCCATTCTTTAAATTTCATTGGGAGCAGGTGACTAAACTTTAGAAGACAATTGTAGTTCTGCTATACTTTGCACTTCTTTTCAAGATGATAAGAAGTGATTGAAGTTGTATTCAGAATACATGACAATTAAATGACATGGTTATGCTCATCTACACCCTATAAATTCACCTAAGCTGATACTGACTTTTGAAGTAGTAAAGGTCTTTCAAAGTTGCATCACCTATCAAATGTAAATGAAAGTTATTTTATTTATCATAGAATAGTTTTTGCCATGTCTCCAAATTTTTTAGGTTGGAGTGACCTTGCATGATTTTCTTAATTGTTGATTTAGCAGGTCAGCAATCCTAAGGCATGAGATTCTTACTTATTTAGAGTGATATAGCTCTAGATGAATGAATGATTTCATTTGGAGATCGTTTTTTGCATTTGTGTATCTTAAACTGGTGTGTCATTCTTTCTACTTCTGTTGCAGGTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCAGTAAGATCCCTTTCATGAATTACTCACATTCTGCATAAATTATAATTTCGAGACGTTGCACGTGGTATTATTCGATGGAAAATCAGTTTTGAATTTTTTAAGTAGTAAGTCTATATAATGTAGTGTTGGTTAATGAGCAATTCTTTTCAGAAAAATATAACAATAATCATTCTGCTGCACAATATCATTTGCCTGGATGCCTTAAATGATATTTCACTTCAAAAAAAATAAAAATTCAAAATATGTGACAACTAAATTGATTTACCAATAAAAGGTATGAACTCTGACAAAAGTAAATGGGTTGGGAATTATTAATCTGTTGTAACAGATACGTCACTGCTGCATAGCTTTAAGATTAGGTGACAATTAAATTAATTTACACCTACCTGAAAATTCTAATTGCTAAATCAAGTAGAGGTGATACAAAACCATCAGATATGTCAAATTCATAAAGAGACACTCTTTCTTCCCTATATTGGGAAACAAATTATTTAAGAATAGAAGATATAGGATTAGTTTTTCCCTGGTATCATATGATAATTGTGAGCTGGGCTTGTATTCTTATGCAGCTAGTCAGGCTTCTCTTCATCTAACAAGATAAGGGTCGGCATTCTTTTCAGTTTTCTAGAAAAGGGGGTAGGCATCCTTTTCATCTGTCAGAAAGATTTGGGTTGGGTTGGGGGGGGGGGGGCTTTATTATTTAGCCTGTTTGGATTACCTTTTGGCTTGTGACATGAAGGCATAAGTTAGAAATTTTTACTTATGGCTTTTAGCTTATTTTTGATATTTTGGTTTAAAAACATGTGCTTATAAGCACTTTTTTATTTTACCTAGACACTTCAAAGCTGCTTAAAAACTATTTTGGCTTTAAAGAACCTATAATAAGCCACAATCCAAACAGGCTCTTAGTCTACCCATGTTGATCATTGAACATCTTGGGCAGAAGGAAAACAAATTTCGAACTGTGGCAATAGGCTTGGCTATAATTAGATTAAGAAGAAAACAAGAATGTGTAAATGCGGAAGTGTGGTAATACGAAGAGAGAAACATAAAAGCTAATGGGGAGGAAGAGTCATTACTCTGGCTATAACTCTTTCCACAAACCATTTACTGTTCTCCAGAAGATTTAATAAATGTAACATTATTTTATAGGTTTTAGAGTCCAAGTCTATATTATTAGGAGAAAAATGGGTGGGATGGATGGACGTATTCTATTTTGATAACTTGAAGTCACTGATAAATAAGATACAATGTATTCTGTTTTGTTAACTTGAGTTGTTATTGGAGGCCCTTTCTTAGTGGATCTAGCATAATTTTTTTTATTTTTAATTACATTTCGATTTGTAGACGTGTATAAATGTAGATAGAGGAGCTCGTCATTGTATTTGAGATTCCAAATCTTGAAGAGGGTTAATTGCAGATAATGCTTGATTGACCAGTTTGCTTAACTCTGTTATTTCATGTAGGTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAGGTTTTGTGCAAAAAACTCTATTGCACTATGTTTACTGTTGCTACTTGTAAAATAAAGGAAAAAAGTAATAACTATGTTTATGGTGTTATTATCTTTGCATTTGTATATTTGGGTTTGTGGGGTAAGATTTCTCAAAATTTTGCCAATTGACATAAACTCTGCTTGGAAATTATTTCATTCTGTGTGTGGTTATATGTCATTTGATGATGAATATTTTGTACTTCCTTTGGAACAAGTTGAAGTTTATATAGCAATTTCTATTTTGGGACATCAAGGATGTTTGCCACCTGTCCATCAACAATATTGTTCTGCATCTTTCAGAAATTTCAAGAATCTTAAGTTTTTTACTATCTTCACAAATTCATCCAATGTATCCGTGACAGACTAGCTTTGAGAAACTGTCTTAGTAATTTCTTTGATTACTAATGACCAATATAGTAGAAATGTCAACTGAGCCATCTTACACTTCCTCCCTAGTCAAATCCTATCACACAATTAATTGGCTGGAGTATTAGAGTTCTAGTCTGGTTCATCGGGCTTTGCATTGTTGCAATGTTTGCGTATTTGATATGAGTCTTGCATGTTAAGGCTGAAGGAGATTAGAGTTATTCAATGATTAATGGATCTTTGAAGTCCTTATTTTCTTAAACTAACATTTTGAAAATTGAAACTCTAAACAGAAATATCAAGTAATGAGTGTATATATAACCTTATTCTACTACCTGACTAACTTATATAGTCTCGTTTATTTCAATATAAATGTGGAATTTTGCATGCTCAGAAGGAAACATTTCTTATCTTTTATCCAACGACTGTTTTTTCAGAAATTTACAATTTTCTCCACCCTCTACACTAGAGGGGAACCAACTTCAGAATAATGATTGTTTTGGTATCTTCCTTTTTTTTGCTTCAGGCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCACGTAATATCTAAGGGCTCACTTTTAGTTCTCCTGTTTGATGATTTGTCATAATGGCGTCCATTTTCCTCTTGAATTGTGCTTTAACTTTTAAGTACTATTTTCCTTGCAGAACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAGGTGCATGTTTAGTTTATTACTTTTCCTAATTTGTTTAGAGTATTGTGTACAATACCTACATGTTTTACTTCATCTTTGGTGGTATTTAGAGAGTTCCTGCTATGATTAAGTGAATGTGGTCTAAACCTTAGTGCAAAGGCCGAGGGCCACTGTAAGTCTTGGGGTCTCTCTGTGCCTTGCAGCAATATAACTTTGTGCTTGTGAAAAACATTAGCTGTTAGATTTGTCAATTCAGATCTGGTTCATTATAGTTAAGATCCTTGGTCTGGCTCTTGCTGATGGCGGGAAATTTGCTATACCTTTGCACTAAAATAGTAAAGAAGGTAAACTGTGTGAAAAAGAAAAAAATGTTGTAGACAACTCAGTGGAGAGTTGCTGGATGTTCCCAATTTTTACCTTCTGTGCACAAACTTTCAAATGTTGGAACTGAAATCATAATCAGCATTCTATTTTCTCTTCATCATTACTGAGCACCATTTGTCTAGATGTTGCAACTGTCACATAATTGTTTTACCTCTCATAGCATACATTTGTCTGGTGATTTCTGATCTTCTTTTCTTTTTTCTTTTTTTTTCAGGAAGCGGAGAAGCACCTATCTGAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTG</genome_strand>
        <mrna_strand>TCTCTCTCTTTTAGGGTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCT..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709017" ref_strand="+" ref_description="SGN-E709017 [FA42BG06]">
      <seq>cgatttgatgcaagaagttgctgttgaaacctttggagcgatggcaaaaactgaaaagatagcctttattcttgaacaagttcgtctatgcttagatcataaagattatgttcgtgctcaaattctctcgagaaagatcaatcccagagtgtttgaagctgatccatctaaagaaaagaagaaagcaaaggagggtgaaaatgtggttgaggaacctgctgcagatattccgtcactgccagagttgaagcagatctactatcaattaatgattaggtattactcacatagcaatgattaccttgaaatatgtcgctgttacaaggctatatatgagatcccttccgtgaaagaagacccagcacagtggataccagttctgaggaaaatttgctggtacttggtattgtctccccatgattctatgcaatcaagtcttcataactcaactttggaggacaaaaatctttcagaaattcctcatttcaggctgcttctgaagcaattgattaccatggaagtcattcagtggactgctttatggaacacattcaaggatgagtttgaaaatgagaagaatatgcctggtggcactttgggggacaaggctgctgaagacctcaaactgagagttattgagcacaacatccttgtcgtctcaaaatactactcaagaataaccttgaagaggctggctgttttactgtgcctcgatattcaggaagcggagaagcacctatctgaaatggttgtatcaaaagctttggttgctaaaatagacagacctatgggtattgtctgtttcaaccccccaaagacagcaatgatatcttgaatccttgggcgtctaatttggagaagctgcttgaccttgtcgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="35189" stop="29300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34890" g_stop="34869" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="79" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34548" g_stop="34352" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="276" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34351" i_stop="33270" i_length="1082">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33269" g_stop="33170" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="376" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33169" i_stop="31704" i_length="1466">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31703" g_stop="31591" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="489" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31590" i_stop="30678" i_length="913">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30677" g_stop="30524" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="643" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30523" i_stop="30415" i_length="109">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30414" g_stop="30337" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="721" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30336" i_stop="29760" i_length="577">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29759" g_stop="29600" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="880" r_length="159" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E709017" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34890" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34352"/>
          <exon e_start="33269" e_stop="33170"/>
          <exon e_start="31703" e_stop="31591"/>
          <exon e_start="30677" e_stop="30524"/>
          <exon e_start="30414" e_stop="30337"/>
          <exon e_start="29759" e_stop="29600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAGGTACATCTGATTATGTTATAAATGTGGCTAAGCAAGTTACCTTCTCTAGAATTGTTGAATGCAACACCCTTCTTACTATCAAGCATTCAGCAGATTCATGCAATCCGAGTATAATTTTAAAATAACGTAATTTATTTTCTTAAGATAACTTGGAATAGTTAATGTGTTCATACTTAAAGCTTGCAACTTCTGCACTTAGTTTTGGTGATTTGTGCAGTATCGGGACTGAAGATATTAGTATTTAAGGCACATAATTTGCTTATTTGCTCATTTTCTGGCAGTTTGTCTACATCTTACTTACATTTGAGTTTGGGTTAGACATGTTTTCTGAATAAAGATTCTGATTGTCTTCATTTTATATATGTTTTAGTTGTCTTTGAGGATTCTAGTTTCCTCCCCTTATCAACTGTGCCAAAGGATTAAAGTGAATGTTATCTGTGCTTTGTCAGAAATGTTTGTTTTTAGTAGAAACTTCATATTTTTTCCGGAAGAGATTATACACCTTGGATGTCATTGAATAAATAGAGACTGAAGTAAGTTCTGCAGAGCTCCATGTTTGAGATAGTTCCATATTTGCTCTGTTTGCTTTGGTTTATTTGTGGATGGACTTCCATTCTTTAAATTTCATTGGGAGCAGGTGACTAAACTTTAGAAGACAATTGTAGTTCTGCTATACTTTGCACTTCTTTTCAAGATGATAAGAAGTGATTGAAGTTGTATTCAGAATACATGACAATTAAATGACATGGTTATGCTCATCTACACCCTATAAATTCACCTAAGCTGATACTGACTTTTGAAGTAGTAAAGGTCTTTCAAAGTTGCATCACCTATCAAATGTAAATGAAAGTTATTTTATTTATCATAGAATAGTTTTTGCCATGTCTCCAAATTTTTTAGGTTGGAGTGACCTTGCATGATTTTCTTAATTGTTGATTTAGCAGGTCAGCAATCCTAAGGCATGAGATTCTTACTTATTTAGAGTGATATAGCTCTAGATGAATGAATGATTTCATTTGGAGATCGTTTTTTGCATTTGTGTATCTTAAACTGGTGTGTCATTCTTTCTACTTCTGTTGCAGGTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCAGTAAGATCCCTTTCATGAATTACTCACATTCTGCATAAATTATAATTTCGAGACGTTGCACGTGGTATTATTCGATGGAAAATCAGTTTTGAATTTTTTAAGTAGTAAGTCTATATAATGTAGTGTTGGTTAATGAGCAATTCTTTTCAGAAAAATATAACAATAATCATTCTGCTGCACAATATCATTTGCCTGGATGCCTTAAATGATATTTCACTTCAAAAAAAATAAAAATTCAAAATATGTGACAACTAAATTGATTTACCAATAAAAGGTATGAACTCTGACAAAAGTAAATGGGTTGGGAATTATTAATCTGTTGTAACAGATACGTCACTGCTGCATAGCTTTAAGATTAGGTGACAATTAAATTAATTTACACCTACCTGAAAATTCTAATTGCTAAATCAAGTAGAGGTGATACAAAACCATCAGATATGTCAAATTCATAAAGAGACACTCTTTCTTCCCTATATTGGGAAACAAATTATTTAAGAATAGAAGATATAGGATTAGTTTTTCCCTGGTATCATATGATAATTGTGAGCTGGGCTTGTATTCTTATGCAGCTAGTCAGGCTTCTCTTCATCTAACAAGATAAGGGTCGGCATTCTTTTCAGTTTTCTAGAAAAGGGGGTAGGCATCCTTTTCATCTGTCAGAAAGATTTGGGTTGGGTTGGGGGGGGGGGGGCTTTATTATTTAGCCTGTTTGGATTACCTTTTGGCTTGTGACATGAAGGCATAAGTTAGAAATTTTTACTTATGGCTTTTAGCTTATTTTTGATATTTTGGTTTAAAAACATGTGCTTATAAGCACTTTTTTATTTTACCTAGACACTTCAAAGCTGCTTAAAAACTATTTTGGCTTTAAAGAACCTATAATAAGCCACAATCCAAACAGGCTCTTAGTCTACCCATGTTGATCATTGAACATCTTGGGCAGAAGGAAAACAAATTTCGAACTGTGGCAATAGGCTTGGCTATAATTAGATTAAGAAGAAAACAAGAATGTGTAAATGCGGAAGTGTGGTAATACGAAGAGAGAAACATAAAAGCTAATGGGGAGGAAGAGTCATTACTCTGGCTATAACTCTTTCCACAAACCATTTACTGTTCTCCAGAAGATTTAATAAATGTAACATTATTTTATAGGTTTTAGAGTCCAAGTCTATATTATTAGGAGAAAAATGGGTGGGATGGATGGACGTATTCTATTTTGATAACTTGAAGTCACTGATAAATAAGATACAATGTATTCTGTTTTGTTAACTTGAGTTGTTATTGGAGGCCCTTTCTTAGTGGATCTAGCATAATTTTTTTTATTTTTAATTACATTTCGATTTGTAGACGTGTATAAATGTAGATAGAGGAGCTCGTCATTGTATTTGAGATTCCAAATCTTGAAGAGGGTTAATTGCAGATAATGCTTGATTGACCAGTTTGCTTAACTCTGTTATTTCATGTAGGTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAGGTTTTGTGCAAAAAACTCTATTGCACTATGTTTACTGTTGCTACTTGTAAAATAAAGGAAAAAAGTAATAACTATGTTTATGGTGTTATTATCTTTGCATTTGTATATTTGGGTTTGTGGGGTAAGATTTCTCAAAATTTTGCCAATTGACATAAACTCTGCTTGGAAATTATTTCATTCTGTGTGTGGTTATATGTCATTTGATGATGAATATTTTGTACTTCCTTTGGAACAAGTTGAAGTTTATATAGCAATTTCTATTTTGGGACATCAAGGATGTTTGCCACCTGTCCATCAACAATATTGTTCTGCATCTTTCAGAAATTTCAAGAATCTTAAGTTTTTTACTATCTTCACAAATTCATCCAATGTATCCGTGACAGACTAGCTTTGAGAAACTGTCTTAGTAATTTCTTTGATTACTAATGACCAATATAGTAGAAATGTCAACTGAGCCATCTTACACTTCCTCCCTAGTCAAATCCTATCACACAATTAATTGGCTGGAGTATTAGAGTTCTAGTCTGGTTCATCGGGCTTTGCATTGTTGCAATGTTTGCGTATTTGATATGAGTCTTGCATGTTAAGGCTGAAGGAGATTAGAGTTATTCAATGATTAATGGATCTTTGAAGTCCTTATTTTCTTAAACTAACATTTTGAAAATTGAAACTCTAAACAGAAATATCAAGTAATGAGTGTATATATAACCTTATTCTACTACCTGACTAACTTATATAGTCTCGTTTATTTCAATATAAATGTGGAATTTTGCATGCTCAGAAGGAAACATTTCTTATCTTTTATCCAACGACTGTTTTTTCAGAAATTTACAATTTTCTCCACCCTCTACACTAGAGGGGAACCAACTTCAGAATAATGATTGTTTTGGTATCTTCCTTTTTTTTGCTTCAGGCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCACGTAATATCTAAGGGCTCACTTTTAGTTCTCCTGTTTGATGATTTGTCATAATGGCGTCCATTTTCCTCTTGAATTGTGCTTTAACTTTTAAGTACTATTTTCCTTGCAGAACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAGGTGCATGTTTAGTTTATTACTTTTCCTAATTTGTTTAGAGTATTGTGTACAATACCTACATGTTTTACTTCATCTTTGGTGGTATTTAGAGAGTTCCTGCTATGATTAAGTGAATGTGGTCTAAACCTTAGTGCAAAGGCCGAGGGCCACTGTAAGTCTTGGGGTCTCTCTGTGCCTTGCAGCAATATAACTTTGTGCTTGTGAAAAACATTAGCTGTTAGATTTGTCAATTCAGATCTGGTTCATTATAGTTAAGATCCTTGGTCTGGCTCTTGCTGATGGCGGGAAATTTGCTATACCTTTGCACTAAAATAGTAAAGAAGGTAAACTGTGTGAAAAAGAAAAAAATGTTGTAGACAACTCAGTGGAGAGTTGCTGGATGTTCCCAATTTTTACCTTCTGTGCACAAACTTTCAAATGTTGGAACTGAAATCATAATCAGCATTCTATTTTCTCTTCATCATTACTGAGCACCATTTGTCTAGATGTTGCAACTGTCACATAATTGTTTTACCTCTCATAGCATACATTTGTCTGGTGATTTCTGATCTTCTTTTCTTTTTTCTTTTTTTTTCAGGAAGCGGAGAAGCACCTATCTGAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAA</genome_strand>
        <mrna_strand>CGATTTGATGCAAGAAGTTGCT..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCAC.............................................................................................................AACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGGAGAAGCACCTATCTGAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTT-CAACCCCCCAAAGACAGCAATGATATCTTGAATCCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343263" ref_strand="+" ref_description="SGN-E343263 [cTOF-17-M18]">
      <seq>gagggtgaaaatgtggttgaggaacctgctgcagatattccgtcactgccagagttgaagcagatctactatcaattaatgattaggtattactcacatagcaatgattaccttgaaatatgtcgctgttacaaggctatatatgagatcccttccgtgaaagaagacccagcacagtggataccagttctgaggaaaatttgctggtacttggtattgtctccccatgattctatgcaatcaagtcttcataactcaactttggaggacaaaaatctttcagaaattcctcatttcaggctgcttctgaagcaattgattaccatggaagtcattcagtggactgctttatggaacacattcaaggatgagtttgaaaatgagaagaatatgcctggtggcactttgggggacaaggctgctgaagacctcaaactgagagttattgagcacaacatccttgtcgtctcaaaatactactcaagaataaccttgaagaggctggctgttttactgtgcctcgatattcaggaagcggagaagcacctatctgaaatggttgtatcaaaagctttggttgctaaaatagacagacctatgggtattggtctgtttccaacccccaaaagacagcaatgatatcttgaattctngggcgtctaatttggagaagctgcttgaccttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="34737" stop="29305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34437" g_stop="34352" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34351" i_stop="33270" i_length="1082">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33269" g_stop="33170" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="186" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33169" i_stop="31704" i_length="1466">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31703" g_stop="31591" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="299" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31590" i_stop="30678" i_length="913">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30677" g_stop="30524" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="453" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30523" i_stop="30415" i_length="109">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30414" g_stop="30337" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="531" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30336" i_stop="29760" i_length="577">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29759" g_stop="29605" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="687" r_length="156" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E343263" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34437" e_stop="34352"/>
          <exon e_start="33269" e_stop="33170"/>
          <exon e_start="31703" e_stop="31591"/>
          <exon e_start="30677" e_stop="30524"/>
          <exon e_start="30414" e_stop="30337"/>
          <exon e_start="29759" e_stop="29605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAGGTACATCTGATTATGTTATAAATGTGGCTAAGCAAGTTACCTTCTCTAGAATTGTTGAATGCAACACCCTTCTTACTATCAAGCATTCAGCAGATTCATGCAATCCGAGTATAATTTTAAAATAACGTAATTTATTTTCTTAAGATAACTTGGAATAGTTAATGTGTTCATACTTAAAGCTTGCAACTTCTGCACTTAGTTTTGGTGATTTGTGCAGTATCGGGACTGAAGATATTAGTATTTAAGGCACATAATTTGCTTATTTGCTCATTTTCTGGCAGTTTGTCTACATCTTACTTACATTTGAGTTTGGGTTAGACATGTTTTCTGAATAAAGATTCTGATTGTCTTCATTTTATATATGTTTTAGTTGTCTTTGAGGATTCTAGTTTCCTCCCCTTATCAACTGTGCCAAAGGATTAAAGTGAATGTTATCTGTGCTTTGTCAGAAATGTTTGTTTTTAGTAGAAACTTCATATTTTTTCCGGAAGAGATTATACACCTTGGATGTCATTGAATAAATAGAGACTGAAGTAAGTTCTGCAGAGCTCCATGTTTGAGATAGTTCCATATTTGCTCTGTTTGCTTTGGTTTATTTGTGGATGGACTTCCATTCTTTAAATTTCATTGGGAGCAGGTGACTAAACTTTAGAAGACAATTGTAGTTCTGCTATACTTTGCACTTCTTTTCAAGATGATAAGAAGTGATTGAAGTTGTATTCAGAATACATGACAATTAAATGACATGGTTATGCTCATCTACACCCTATAAATTCACCTAAGCTGATACTGACTTTTGAAGTAGTAAAGGTCTTTCAAAGTTGCATCACCTATCAAATGTAAATGAAAGTTATTTTATTTATCATAGAATAGTTTTTGCCATGTCTCCAAATTTTTTAGGTTGGAGTGACCTTGCATGATTTTCTTAATTGTTGATTTAGCAGGTCAGCAATCCTAAGGCATGAGATTCTTACTTATTTAGAGTGATATAGCTCTAGATGAATGAATGATTTCATTTGGAGATCGTTTTTTGCATTTGTGTATCTTAAACTGGTGTGTCATTCTTTCTACTTCTGTTGCAGGTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCAGTAAGATCCCTTTCATGAATTACTCACATTCTGCATAAATTATAATTTCGAGACGTTGCACGTGGTATTATTCGATGGAAAATCAGTTTTGAATTTTTTAAGTAGTAAGTCTATATAATGTAGTGTTGGTTAATGAGCAATTCTTTTCAGAAAAATATAACAATAATCATTCTGCTGCACAATATCATTTGCCTGGATGCCTTAAATGATATTTCACTTCAAAAAAAATAAAAATTCAAAATATGTGACAACTAAATTGATTTACCAATAAAAGGTATGAACTCTGACAAAAGTAAATGGGTTGGGAATTATTAATCTGTTGTAACAGATACGTCACTGCTGCATAGCTTTAAGATTAGGTGACAATTAAATTAATTTACACCTACCTGAAAATTCTAATTGCTAAATCAAGTAGAGGTGATACAAAACCATCAGATATGTCAAATTCATAAAGAGACACTCTTTCTTCCCTATATTGGGAAACAAATTATTTAAGAATAGAAGATATAGGATTAGTTTTTCCCTGGTATCATATGATAATTGTGAGCTGGGCTTGTATTCTTATGCAGCTAGTCAGGCTTCTCTTCATCTAACAAGATAAGGGTCGGCATTCTTTTCAGTTTTCTAGAAAAGGGGGTAGGCATCCTTTTCATCTGTCAGAAAGATTTGGGTTGGGTTGGGGGGGGGGGGGCTTTATTATTTAGCCTGTTTGGATTACCTTTTGGCTTGTGACATGAAGGCATAAGTTAGAAATTTTTACTTATGGCTTTTAGCTTATTTTTGATATTTTGGTTTAAAAACATGTGCTTATAAGCACTTTTTTATTTTACCTAGACACTTCAAAGCTGCTTAAAAACTATTTTGGCTTTAAAGAACCTATAATAAGCCACAATCCAAACAGGCTCTTAGTCTACCCATGTTGATCATTGAACATCTTGGGCAGAAGGAAAACAAATTTCGAACTGTGGCAATAGGCTTGGCTATAATTAGATTAAGAAGAAAACAAGAATGTGTAAATGCGGAAGTGTGGTAATACGAAGAGAGAAACATAAAAGCTAATGGGGAGGAAGAGTCATTACTCTGGCTATAACTCTTTCCACAAACCATTTACTGTTCTCCAGAAGATTTAATAAATGTAACATTATTTTATAGGTTTTAGAGTCCAAGTCTATATTATTAGGAGAAAAATGGGTGGGATGGATGGACGTATTCTATTTTGATAACTTGAAGTCACTGATAAATAAGATACAATGTATTCTGTTTTGTTAACTTGAGTTGTTATTGGAGGCCCTTTCTTAGTGGATCTAGCATAATTTTTTTTATTTTTAATTACATTTCGATTTGTAGACGTGTATAAATGTAGATAGAGGAGCTCGTCATTGTATTTGAGATTCCAAATCTTGAAGAGGGTTAATTGCAGATAATGCTTGATTGACCAGTTTGCTTAACTCTGTTATTTCATGTAGGTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAGGTTTTGTGCAAAAAACTCTATTGCACTATGTTTACTGTTGCTACTTGTAAAATAAAGGAAAAAAGTAATAACTATGTTTATGGTGTTATTATCTTTGCATTTGTATATTTGGGTTTGTGGGGTAAGATTTCTCAAAATTTTGCCAATTGACATAAACTCTGCTTGGAAATTATTTCATTCTGTGTGTGGTTATATGTCATTTGATGATGAATATTTTGTACTTCCTTTGGAACAAGTTGAAGTTTATATAGCAATTTCTATTTTGGGACATCAAGGATGTTTGCCACCTGTCCATCAACAATATTGTTCTGCATCTTTCAGAAATTTCAAGAATCTTAAGTTTTTTACTATCTTCACAAATTCATCCAATGTATCCGTGACAGACTAGCTTTGAGAAACTGTCTTAGTAATTTCTTTGATTACTAATGACCAATATAGTAGAAATGTCAACTGAGCCATCTTACACTTCCTCCCTAGTCAAATCCTATCACACAATTAATTGGCTGGAGTATTAGAGTTCTAGTCTGGTTCATCGGGCTTTGCATTGTTGCAATGTTTGCGTATTTGATATGAGTCTTGCATGTTAAGGCTGAAGGAGATTAGAGTTATTCAATGATTAATGGATCTTTGAAGTCCTTATTTTCTTAAACTAACATTTTGAAAATTGAAACTCTAAACAGAAATATCAAGTAATGAGTGTATATATAACCTTATTCTACTACCTGACTAACTTATATAGTCTCGTTTATTTCAATATAAATGTGGAATTTTGCATGCTCAGAAGGAAACATTTCTTATCTTTTATCCAACGACTGTTTTTTCAGAAATTTACAATTTTCTCCACCCTCTACACTAGAGGGGAACCAACTTCAGAATAATGATTGTTTTGGTATCTTCCTTTTTTTTGCTTCAGGCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCACGTAATATCTAAGGGCTCACTTTTAGTTCTCCTGTTTGATGATTTGTCATAATGGCGTCCATTTTCCTCTTGAATTGTGCTTTAACTTTTAAGTACTATTTTCCTTGCAGAACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAGGTGCATGTTTAGTTTATTACTTTTCCTAATTTGTTTAGAGTATTGTGTACAATACCTACATGTTTTACTTCATCTTTGGTGGTATTTAGAGAGTTCCTGCTATGATTAAGTGAATGTGGTCTAAACCTTAGTGCAAAGGCCGAGGGCCACTGTAAGTCTTGGGGTCTCTCTGTGCCTTGCAGCAATATAACTTTGTGCTTGTGAAAAACATTAGCTGTTAGATTTGTCAATTCAGATCTGGTTCATTATAGTTAAGATCCTTGGTCTGGCTCTTGCTGATGGCGGGAAATTTGCTATACCTTTGCACTAAAATAGTAAAGAAGGTAAACTGTGTGAAAAAGAAAAAAATGTTGTAGACAACTCAGTGGAGAGTTGCTGGATGTTCCCAATTTTTACCTTCTGTGCACAAACTTTCAAATGTTGGAACTGAAATCATAATCAGCATTCTATTTTCTCTTCATCATTACTGAGCACCATTTGTCTAGATGTTGCAACTGTCACATAATTGTTTTACCTCTCATAGCATACATTTGTCTGGTGATTTCTGATCTTCTTTTCTTTTTTCTTTTTTTTTCAGGAAGCGGAGAAGCACCTATCTGAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTG-TCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGT</genome_strand>
        <mrna_strand>GAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCAC.............................................................................................................AACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGGAGAAGCACCTATCTGAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTNGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430087" ref_strand="+" ref_description="SGN-E430087 [STM-53-I17]">
      <seq>aaatatgtcgctgttacaaggctatatatgagatcccttctgtgaaagaagacccagcacagtggataccagttctgaggaaaatttgctggtacttggtattgtctccccatgattctatgcaatcaagtcttcataactcaactttagaggacaaaaatctttcagaaattcctcatttcaggctgcttctgaagcaattgattaccatggaggtcattcagtggactgctttatggaacacattcaaggatgagtttgaaaatgagaagaatatgcctggtggcactttgggggacaaggctgctgaagatctcaaactgagagttattgagcataacatccttgtcgtctcaaaatactactcgagaataaccttgaagagactggcagttttattgtgcctcgatattcaggaagcggagaagcacctatctgaaatggttgtgtcaaaagctttgattgctaagatagacagacctatgggtattgtctgtttccaacccccaaaagacagcaatgacatcttgaattcttgggcttctaatttggagaagctgcttgaccttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="33540" stop="29305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33240" g_stop="33170" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33169" i_stop="31704" i_length="1466">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31703" g_stop="31591" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="184" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31590" i_stop="30678" i_length="913">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30677" g_stop="30524" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="338" r_length="154" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30523" i_stop="30415" i_length="109">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30414" g_stop="30337" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="416" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30336" i_stop="29760" i_length="577">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29759" g_stop="29605" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="571" r_length="155" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E430087" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33240" e_stop="33170"/>
          <exon e_start="31703" e_stop="31591"/>
          <exon e_start="30677" e_stop="30524"/>
          <exon e_start="30414" e_stop="30337"/>
          <exon e_start="29759" e_stop="29605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCAGTAAGATCCCTTTCATGAATTACTCACATTCTGCATAAATTATAATTTCGAGACGTTGCACGTGGTATTATTCGATGGAAAATCAGTTTTGAATTTTTTAAGTAGTAAGTCTATATAATGTAGTGTTGGTTAATGAGCAATTCTTTTCAGAAAAATATAACAATAATCATTCTGCTGCACAATATCATTTGCCTGGATGCCTTAAATGATATTTCACTTCAAAAAAAATAAAAATTCAAAATATGTGACAACTAAATTGATTTACCAATAAAAGGTATGAACTCTGACAAAAGTAAATGGGTTGGGAATTATTAATCTGTTGTAACAGATACGTCACTGCTGCATAGCTTTAAGATTAGGTGACAATTAAATTAATTTACACCTACCTGAAAATTCTAATTGCTAAATCAAGTAGAGGTGATACAAAACCATCAGATATGTCAAATTCATAAAGAGACACTCTTTCTTCCCTATATTGGGAAACAAATTATTTAAGAATAGAAGATATAGGATTAGTTTTTCCCTGGTATCATATGATAATTGTGAGCTGGGCTTGTATTCTTATGCAGCTAGTCAGGCTTCTCTTCATCTAACAAGATAAGGGTCGGCATTCTTTTCAGTTTTCTAGAAAAGGGGGTAGGCATCCTTTTCATCTGTCAGAAAGATTTGGGTTGGGTTGGGGGGGGGGGGGCTTTATTATTTAGCCTGTTTGGATTACCTTTTGGCTTGTGACATGAAGGCATAAGTTAGAAATTTTTACTTATGGCTTTTAGCTTATTTTTGATATTTTGGTTTAAAAACATGTGCTTATAAGCACTTTTTTATTTTACCTAGACACTTCAAAGCTGCTTAAAAACTATTTTGGCTTTAAAGAACCTATAATAAGCCACAATCCAAACAGGCTCTTAGTCTACCCATGTTGATCATTGAACATCTTGGGCAGAAGGAAAACAAATTTCGAACTGTGGCAATAGGCTTGGCTATAATTAGATTAAGAAGAAAACAAGAATGTGTAAATGCGGAAGTGTGGTAATACGAAGAGAGAAACATAAAAGCTAATGGGGAGGAAGAGTCATTACTCTGGCTATAACTCTTTCCACAAACCATTTACTGTTCTCCAGAAGATTTAATAAATGTAACATTATTTTATAGGTTTTAGAGTCCAAGTCTATATTATTAGGAGAAAAATGGGTGGGATGGATGGACGTATTCTATTTTGATAACTTGAAGTCACTGATAAATAAGATACAATGTATTCTGTTTTGTTAACTTGAGTTGTTATTGGAGGCCCTTTCTTAGTGGATCTAGCATAATTTTTTTTATTTTTAATTACATTTCGATTTGTAGACGTGTATAAATGTAGATAGAGGAGCTCGTCATTGTATTTGAGATTCCAAATCTTGAAGAGGGTTAATTGCAGATAATGCTTGATTGACCAGTTTGCTTAACTCTGTTATTTCATGTAGGTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAGGTTTTGTGCAAAAAACTCTATTGCACTATGTTTACTGTTGCTACTTGTAAAATAAAGGAAAAAAGTAATAACTATGTTTATGGTGTTATTATCTTTGCATTTGTATATTTGGGTTTGTGGGGTAAGATTTCTCAAAATTTTGCCAATTGACATAAACTCTGCTTGGAAATTATTTCATTCTGTGTGTGGTTATATGTCATTTGATGATGAATATTTTGTACTTCCTTTGGAACAAGTTGAAGTTTATATAGCAATTTCTATTTTGGGACATCAAGGATGTTTGCCACCTGTCCATCAACAATATTGTTCTGCATCTTTCAGAAATTTCAAGAATCTTAAGTTTTTTACTATCTTCACAAATTCATCCAATGTATCCGTGACAGACTAGCTTTGAGAAACTGTCTTAGTAATTTCTTTGATTACTAATGACCAATATAGTAGAAATGTCAACTGAGCCATCTTACACTTCCTCCCTAGTCAAATCCTATCACACAATTAATTGGCTGGAGTATTAGAGTTCTAGTCTGGTTCATCGGGCTTTGCATTGTTGCAATGTTTGCGTATTTGATATGAGTCTTGCATGTTAAGGCTGAAGGAGATTAGAGTTATTCAATGATTAATGGATCTTTGAAGTCCTTATTTTCTTAAACTAACATTTTGAAAATTGAAACTCTAAACAGAAATATCAAGTAATGAGTGTATATATAACCTTATTCTACTACCTGACTAACTTATATAGTCTCGTTTATTTCAATATAAATGTGGAATTTTGCATGCTCAGAAGGAAACATTTCTTATCTTTTATCCAACGACTGTTTTTTCAGAAATTTACAATTTTCTCCACCCTCTACACTAGAGGGGAACCAACTTCAGAATAATGATTGTTTTGGTATCTTCCTTTTTTTTGCTTCAGGCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCACGTAATATCTAAGGGCTCACTTTTAGTTCTCCTGTTTGATGATTTGTCATAATGGCGTCCATTTTCCTCTTGAATTGTGCTTTAACTTTTAAGTACTATTTTCCTTGCAGAACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAGGTGCATGTTTAGTTTATTACTTTTCCTAATTTGTTTAGAGTATTGTGTACAATACCTACATGTTTTACTTCATCTTTGGTGGTATTTAGAGAGTTCCTGCTATGATTAAGTGAATGTGGTCTAAACCTTAGTGCAAAGGCCGAGGGCCACTGTAAGTCTTGGGGTCTCTCTGTGCCTTGCAGCAATATAACTTTGTGCTTGTGAAAAACATTAGCTGTTAGATTTGTCAATTCAGATCTGGTTCATTATAGTTAAGATCCTTGGTCTGGCTCTTGCTGATGGCGGGAAATTTGCTATACCTTTGCACTAAAATAGTAAAGAAGGTAAACTGTGTGAAAAAGAAAAAAATGTTGTAGACAACTCAGTGGAGAGTTGCTGGATGTTCCCAATTTTTACCTTCTGTGCACAAACTTTCAAATGTTGGAACTGAAATCATAATCAGCATTCTATTTTCTCTTCATCATTACTGAGCACCATTTGTCTAGATGTTGCAACTGTCACATAATTGTTTTACCTCTCATAGCATACATTTGTCTGGTGATTTCTGATCTTCTTTTCTTTTTTCTTTTTTTTTCAGGAAGCGGAGAAGCACCTATCTGAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGT</genome_strand>
        <mrna_strand>AAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCTGTGAAAGAAGACCCAGCACAGTGGATACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTAGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTCTGAAGCAATTGATTACCATGGAGGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGATCTCAAACTGAGAGTTATTGAGCAT.............................................................................................................AACATCCTTGTCGTCTCAAAATACTACTCGAGAATAACCTTGAAGAGACTGGCAGTTTTATTGTGCCTCGATATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGGAGAAGCACCTATCTGAAATGGTTGTGTCAAAAGCTTTGATTGCTAAGATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGACATCTTGAATTCTTGGGCTTCTAATTTGGAGAAGCTGCTTGACCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458780" ref_strand="+" ref_description="SGN-E458780 [cPRO-7-I14]">
      <seq>aaatatgtcgctgttacaaggctatatatgagatcccttctgtgaaagaagacccagcacagtggataccagttctgaggaaaatttgctggtacttggtattgtctccccatgattctatgcaatcaagtcttcataactcaactttagaggacaaaaatctttcagaaattcctcatttcaggctgcttctgaagcaattgattaccatggaggtcattcagtggactgctttatggaacacattcaaggatgagtttgaaaatgagaagaatatgcctggtggcactttgggggacaaggctgctgaagatctcaaactgagagttattgagcataacatccttgtcgtctcaaaatactactcgagaataaccttgaagagactggcagttttattgtgcctcgatattcaggaagcggagaagcacctatctgaaatggttgtgtcaaaagctttgattgctaagatagacagacctatgggtattgtctgtttccaacccccaaaagacagcaatgacatcttgaattcttgggcttctaatttggagaagctgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="33540" stop="29312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33240" g_stop="33170" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33169" i_stop="31704" i_length="1466">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31703" g_stop="31591" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="184" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31590" i_stop="30678" i_length="913">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30677" g_stop="30524" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="338" r_length="154" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30523" i_stop="30415" i_length="109">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30414" g_stop="30337" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="416" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30336" i_stop="29760" i_length="577">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29759" g_stop="29612" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="564" r_length="148" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E458780" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33240" e_stop="33170"/>
          <exon e_start="31703" e_stop="31591"/>
          <exon e_start="30677" e_stop="30524"/>
          <exon e_start="30414" e_stop="30337"/>
          <exon e_start="29759" e_stop="29612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCAGTAAGATCCCTTTCATGAATTACTCACATTCTGCATAAATTATAATTTCGAGACGTTGCACGTGGTATTATTCGATGGAAAATCAGTTTTGAATTTTTTAAGTAGTAAGTCTATATAATGTAGTGTTGGTTAATGAGCAATTCTTTTCAGAAAAATATAACAATAATCATTCTGCTGCACAATATCATTTGCCTGGATGCCTTAAATGATATTTCACTTCAAAAAAAATAAAAATTCAAAATATGTGACAACTAAATTGATTTACCAATAAAAGGTATGAACTCTGACAAAAGTAAATGGGTTGGGAATTATTAATCTGTTGTAACAGATACGTCACTGCTGCATAGCTTTAAGATTAGGTGACAATTAAATTAATTTACACCTACCTGAAAATTCTAATTGCTAAATCAAGTAGAGGTGATACAAAACCATCAGATATGTCAAATTCATAAAGAGACACTCTTTCTTCCCTATATTGGGAAACAAATTATTTAAGAATAGAAGATATAGGATTAGTTTTTCCCTGGTATCATATGATAATTGTGAGCTGGGCTTGTATTCTTATGCAGCTAGTCAGGCTTCTCTTCATCTAACAAGATAAGGGTCGGCATTCTTTTCAGTTTTCTAGAAAAGGGGGTAGGCATCCTTTTCATCTGTCAGAAAGATTTGGGTTGGGTTGGGGGGGGGGGGGCTTTATTATTTAGCCTGTTTGGATTACCTTTTGGCTTGTGACATGAAGGCATAAGTTAGAAATTTTTACTTATGGCTTTTAGCTTATTTTTGATATTTTGGTTTAAAAACATGTGCTTATAAGCACTTTTTTATTTTACCTAGACACTTCAAAGCTGCTTAAAAACTATTTTGGCTTTAAAGAACCTATAATAAGCCACAATCCAAACAGGCTCTTAGTCTACCCATGTTGATCATTGAACATCTTGGGCAGAAGGAAAACAAATTTCGAACTGTGGCAATAGGCTTGGCTATAATTAGATTAAGAAGAAAACAAGAATGTGTAAATGCGGAAGTGTGGTAATACGAAGAGAGAAACATAAAAGCTAATGGGGAGGAAGAGTCATTACTCTGGCTATAACTCTTTCCACAAACCATTTACTGTTCTCCAGAAGATTTAATAAATGTAACATTATTTTATAGGTTTTAGAGTCCAAGTCTATATTATTAGGAGAAAAATGGGTGGGATGGATGGACGTATTCTATTTTGATAACTTGAAGTCACTGATAAATAAGATACAATGTATTCTGTTTTGTTAACTTGAGTTGTTATTGGAGGCCCTTTCTTAGTGGATCTAGCATAATTTTTTTTATTTTTAATTACATTTCGATTTGTAGACGTGTATAAATGTAGATAGAGGAGCTCGTCATTGTATTTGAGATTCCAAATCTTGAAGAGGGTTAATTGCAGATAATGCTTGATTGACCAGTTTGCTTAACTCTGTTATTTCATGTAGGTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAGGTTTTGTGCAAAAAACTCTATTGCACTATGTTTACTGTTGCTACTTGTAAAATAAAGGAAAAAAGTAATAACTATGTTTATGGTGTTATTATCTTTGCATTTGTATATTTGGGTTTGTGGGGTAAGATTTCTCAAAATTTTGCCAATTGACATAAACTCTGCTTGGAAATTATTTCATTCTGTGTGTGGTTATATGTCATTTGATGATGAATATTTTGTACTTCCTTTGGAACAAGTTGAAGTTTATATAGCAATTTCTATTTTGGGACATCAAGGATGTTTGCCACCTGTCCATCAACAATATTGTTCTGCATCTTTCAGAAATTTCAAGAATCTTAAGTTTTTTACTATCTTCACAAATTCATCCAATGTATCCGTGACAGACTAGCTTTGAGAAACTGTCTTAGTAATTTCTTTGATTACTAATGACCAATATAGTAGAAATGTCAACTGAGCCATCTTACACTTCCTCCCTAGTCAAATCCTATCACACAATTAATTGGCTGGAGTATTAGAGTTCTAGTCTGGTTCATCGGGCTTTGCATTGTTGCAATGTTTGCGTATTTGATATGAGTCTTGCATGTTAAGGCTGAAGGAGATTAGAGTTATTCAATGATTAATGGATCTTTGAAGTCCTTATTTTCTTAAACTAACATTTTGAAAATTGAAACTCTAAACAGAAATATCAAGTAATGAGTGTATATATAACCTTATTCTACTACCTGACTAACTTATATAGTCTCGTTTATTTCAATATAAATGTGGAATTTTGCATGCTCAGAAGGAAACATTTCTTATCTTTTATCCAACGACTGTTTTTTCAGAAATTTACAATTTTCTCCACCCTCTACACTAGAGGGGAACCAACTTCAGAATAATGATTGTTTTGGTATCTTCCTTTTTTTTGCTTCAGGCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCACGTAATATCTAAGGGCTCACTTTTAGTTCTCCTGTTTGATGATTTGTCATAATGGCGTCCATTTTCCTCTTGAATTGTGCTTTAACTTTTAAGTACTATTTTCCTTGCAGAACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAGGTGCATGTTTAGTTTATTACTTTTCCTAATTTGTTTAGAGTATTGTGTACAATACCTACATGTTTTACTTCATCTTTGGTGGTATTTAGAGAGTTCCTGCTATGATTAAGTGAATGTGGTCTAAACCTTAGTGCAAAGGCCGAGGGCCACTGTAAGTCTTGGGGTCTCTCTGTGCCTTGCAGCAATATAACTTTGTGCTTGTGAAAAACATTAGCTGTTAGATTTGTCAATTCAGATCTGGTTCATTATAGTTAAGATCCTTGGTCTGGCTCTTGCTGATGGCGGGAAATTTGCTATACCTTTGCACTAAAATAGTAAAGAAGGTAAACTGTGTGAAAAAGAAAAAAATGTTGTAGACAACTCAGTGGAGAGTTGCTGGATGTTCCCAATTTTTACCTTCTGTGCACAAACTTTCAAATGTTGGAACTGAAATCATAATCAGCATTCTATTTTCTCTTCATCATTACTGAGCACCATTTGTCTAGATGTTGCAACTGTCACATAATTGTTTTACCTCTCATAGCATACATTTGTCTGGTGATTTCTGATCTTCTTTTCTTTTTTCTTTTTTTTTCAGGAAGCGGAGAAGCACCTATCTGAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTG</genome_strand>
        <mrna_strand>AAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCTGTGAAAGAAGACCCAGCACAGTGGATACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTAGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTCTGAAGCAATTGATTACCATGGAGGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGATCTCAAACTGAGAGTTATTGAGCAT.............................................................................................................AACATCCTTGTCGTCTCAAAATACTACTCGAGAATAACCTTGAAGAGACTGGCAGTTTTATTGTGCCTCGATATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGGAGAAGCACCTATCTGAAATGGTTGTGTCAAAAGCTTTGATTGCTAAGATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGACATCTTGAATTCTTGGGCTTCTAATTTGGAGAAGCTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289818" ref_strand="+" ref_description="SGN-E289818 [cLET-9-J15]">
      <seq>tcacatagcaatgattaccttgaaatatgtcgctgttacaaggctatatatgagatcccttccgtgaaagaagacccagcacagtggataccagttctgaggaaaatttgctggtacttggtattgtctccccatgattctatgcaatcaagtcttcataactcaactttggaggacaaaaatctttcagaaattcctcatttcaggctgcttctgaagcaattgattaccatggaagtcattcagtggactgctttatggaacacattcaaggatgagtttgaaaatgagaagaatatgcctggtggcactttgggggacaaggctgctgaagacctcaaactgagagttattgagcacaacatccttgtcgtctcaaaatactactcaagaataaccttgaagaggctggctgttttactgtgcctcgatattcaggaagcggagaagcacctatctgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="33562" stop="29434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33262" g_stop="33170" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33169" i_stop="31704" i_length="1466">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31703" g_stop="31591" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="206" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31590" i_stop="30678" i_length="913">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30677" g_stop="30524" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="360" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30523" i_stop="30415" i_length="109">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30414" g_stop="30337" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="438" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30336" i_stop="29760" i_length="577">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29759" g_stop="29734" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="464" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E289818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33262" e_stop="33170"/>
          <exon e_start="31703" e_stop="31591"/>
          <exon e_start="30677" e_stop="30524"/>
          <exon e_start="30414" e_stop="30337"/>
          <exon e_start="29759" e_stop="29734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCAGTAAGATCCCTTTCATGAATTACTCACATTCTGCATAAATTATAATTTCGAGACGTTGCACGTGGTATTATTCGATGGAAAATCAGTTTTGAATTTTTTAAGTAGTAAGTCTATATAATGTAGTGTTGGTTAATGAGCAATTCTTTTCAGAAAAATATAACAATAATCATTCTGCTGCACAATATCATTTGCCTGGATGCCTTAAATGATATTTCACTTCAAAAAAAATAAAAATTCAAAATATGTGACAACTAAATTGATTTACCAATAAAAGGTATGAACTCTGACAAAAGTAAATGGGTTGGGAATTATTAATCTGTTGTAACAGATACGTCACTGCTGCATAGCTTTAAGATTAGGTGACAATTAAATTAATTTACACCTACCTGAAAATTCTAATTGCTAAATCAAGTAGAGGTGATACAAAACCATCAGATATGTCAAATTCATAAAGAGACACTCTTTCTTCCCTATATTGGGAAACAAATTATTTAAGAATAGAAGATATAGGATTAGTTTTTCCCTGGTATCATATGATAATTGTGAGCTGGGCTTGTATTCTTATGCAGCTAGTCAGGCTTCTCTTCATCTAACAAGATAAGGGTCGGCATTCTTTTCAGTTTTCTAGAAAAGGGGGTAGGCATCCTTTTCATCTGTCAGAAAGATTTGGGTTGGGTTGGGGGGGGGGGGGCTTTATTATTTAGCCTGTTTGGATTACCTTTTGGCTTGTGACATGAAGGCATAAGTTAGAAATTTTTACTTATGGCTTTTAGCTTATTTTTGATATTTTGGTTTAAAAACATGTGCTTATAAGCACTTTTTTATTTTACCTAGACACTTCAAAGCTGCTTAAAAACTATTTTGGCTTTAAAGAACCTATAATAAGCCACAATCCAAACAGGCTCTTAGTCTACCCATGTTGATCATTGAACATCTTGGGCAGAAGGAAAACAAATTTCGAACTGTGGCAATAGGCTTGGCTATAATTAGATTAAGAAGAAAACAAGAATGTGTAAATGCGGAAGTGTGGTAATACGAAGAGAGAAACATAAAAGCTAATGGGGAGGAAGAGTCATTACTCTGGCTATAACTCTTTCCACAAACCATTTACTGTTCTCCAGAAGATTTAATAAATGTAACATTATTTTATAGGTTTTAGAGTCCAAGTCTATATTATTAGGAGAAAAATGGGTGGGATGGATGGACGTATTCTATTTTGATAACTTGAAGTCACTGATAAATAAGATACAATGTATTCTGTTTTGTTAACTTGAGTTGTTATTGGAGGCCCTTTCTTAGTGGATCTAGCATAATTTTTTTTATTTTTAATTACATTTCGATTTGTAGACGTGTATAAATGTAGATAGAGGAGCTCGTCATTGTATTTGAGATTCCAAATCTTGAAGAGGGTTAATTGCAGATAATGCTTGATTGACCAGTTTGCTTAACTCTGTTATTTCATGTAGGTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAGGTTTTGTGCAAAAAACTCTATTGCACTATGTTTACTGTTGCTACTTGTAAAATAAAGGAAAAAAGTAATAACTATGTTTATGGTGTTATTATCTTTGCATTTGTATATTTGGGTTTGTGGGGTAAGATTTCTCAAAATTTTGCCAATTGACATAAACTCTGCTTGGAAATTATTTCATTCTGTGTGTGGTTATATGTCATTTGATGATGAATATTTTGTACTTCCTTTGGAACAAGTTGAAGTTTATATAGCAATTTCTATTTTGGGACATCAAGGATGTTTGCCACCTGTCCATCAACAATATTGTTCTGCATCTTTCAGAAATTTCAAGAATCTTAAGTTTTTTACTATCTTCACAAATTCATCCAATGTATCCGTGACAGACTAGCTTTGAGAAACTGTCTTAGTAATTTCTTTGATTACTAATGACCAATATAGTAGAAATGTCAACTGAGCCATCTTACACTTCCTCCCTAGTCAAATCCTATCACACAATTAATTGGCTGGAGTATTAGAGTTCTAGTCTGGTTCATCGGGCTTTGCATTGTTGCAATGTTTGCGTATTTGATATGAGTCTTGCATGTTAAGGCTGAAGGAGATTAGAGTTATTCAATGATTAATGGATCTTTGAAGTCCTTATTTTCTTAAACTAACATTTTGAAAATTGAAACTCTAAACAGAAATATCAAGTAATGAGTGTATATATAACCTTATTCTACTACCTGACTAACTTATATAGTCTCGTTTATTTCAATATAAATGTGGAATTTTGCATGCTCAGAAGGAAACATTTCTTATCTTTTATCCAACGACTGTTTTTTCAGAAATTTACAATTTTCTCCACCCTCTACACTAGAGGGGAACCAACTTCAGAATAATGATTGTTTTGGTATCTTCCTTTTTTTTGCTTCAGGCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCACGTAATATCTAAGGGCTCACTTTTAGTTCTCCTGTTTGATGATTTGTCATAATGGCGTCCATTTTCCTCTTGAATTGTGCTTTAACTTTTAAGTACTATTTTCCTTGCAGAACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAGGTGCATGTTTAGTTTATTACTTTTCCTAATTTGTTTAGAGTATTGTGTACAATACCTACATGTTTTACTTCATCTTTGGTGGTATTTAGAGAGTTCCTGCTATGATTAAGTGAATGTGGTCTAAACCTTAGTGCAAAGGCCGAGGGCCACTGTAAGTCTTGGGGTCTCTCTGTGCCTTGCAGCAATATAACTTTGTGCTTGTGAAAAACATTAGCTGTTAGATTTGTCAATTCAGATCTGGTTCATTATAGTTAAGATCCTTGGTCTGGCTCTTGCTGATGGCGGGAAATTTGCTATACCTTTGCACTAAAATAGTAAAGAAGGTAAACTGTGTGAAAAAGAAAAAAATGTTGTAGACAACTCAGTGGAGAGTTGCTGGATGTTCCCAATTTTTACCTTCTGTGCACAAACTTTCAAATGTTGGAACTGAAATCATAATCAGCATTCTATTTTCTCTTCATCATTACTGAGCACCATTTGTCTAGATGTTGCAACTGTCACATAATTGTTTTACCTCTCATAGCATACATTTGTCTGGTGATTTCTGATCTTCTTTTCTTTTTTCTTTTTTTTTCAGGAAGCGGAGAAGCACCTATCTGAAAT</genome_strand>
        <mrna_strand>TCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCAC.............................................................................................................AACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGGAGAAGCACCTATCTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335399" ref_strand="+" ref_description="SGN-E335399 [cTOE-2-O12]">
      <seq>tgttacaaggctatatatgagatcccttccgtgaaagaagacccagcacagtggataccagttctgaggaaaatttgctggtacttggtattgtctccccatgattctatgcaatcaagtcttcataactcaactttggaggacaaaaatctttcagaaattcctcatttcaggctgcttctgaagcaattgattaccatggaagtcattcagtggactgctttatggaacacattcaaggatgagtttgaaaatgagaagaatatgcctggtggcactttgggggacaaggctgctgaagacctcaaactgagagttattgagcacaacatccttgtcgtctcaaaatactactcaagaataaccttgaagaggctggctgttttactgtgcctcgatattcaggaagcggaaaagcacctatctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="33529" stop="29435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33229" g_stop="33170" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33169" i_stop="31704" i_length="1466">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31703" g_stop="31591" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="173" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31590" i_stop="30678" i_length="913">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30677" g_stop="30524" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="327" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30523" i_stop="30415" i_length="109">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30414" g_stop="30337" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="405" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30336" i_stop="29760" i_length="577">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29759" g_stop="29735" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="430" r_length="25" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E335399" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33229" e_stop="33170"/>
          <exon e_start="31703" e_stop="31591"/>
          <exon e_start="30677" e_stop="30524"/>
          <exon e_start="30414" e_stop="30337"/>
          <exon e_start="29759" e_stop="29735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCAGTAAGATCCCTTTCATGAATTACTCACATTCTGCATAAATTATAATTTCGAGACGTTGCACGTGGTATTATTCGATGGAAAATCAGTTTTGAATTTTTTAAGTAGTAAGTCTATATAATGTAGTGTTGGTTAATGAGCAATTCTTTTCAGAAAAATATAACAATAATCATTCTGCTGCACAATATCATTTGCCTGGATGCCTTAAATGATATTTCACTTCAAAAAAAATAAAAATTCAAAATATGTGACAACTAAATTGATTTACCAATAAAAGGTATGAACTCTGACAAAAGTAAATGGGTTGGGAATTATTAATCTGTTGTAACAGATACGTCACTGCTGCATAGCTTTAAGATTAGGTGACAATTAAATTAATTTACACCTACCTGAAAATTCTAATTGCTAAATCAAGTAGAGGTGATACAAAACCATCAGATATGTCAAATTCATAAAGAGACACTCTTTCTTCCCTATATTGGGAAACAAATTATTTAAGAATAGAAGATATAGGATTAGTTTTTCCCTGGTATCATATGATAATTGTGAGCTGGGCTTGTATTCTTATGCAGCTAGTCAGGCTTCTCTTCATCTAACAAGATAAGGGTCGGCATTCTTTTCAGTTTTCTAGAAAAGGGGGTAGGCATCCTTTTCATCTGTCAGAAAGATTTGGGTTGGGTTGGGGGGGGGGGGGCTTTATTATTTAGCCTGTTTGGATTACCTTTTGGCTTGTGACATGAAGGCATAAGTTAGAAATTTTTACTTATGGCTTTTAGCTTATTTTTGATATTTTGGTTTAAAAACATGTGCTTATAAGCACTTTTTTATTTTACCTAGACACTTCAAAGCTGCTTAAAAACTATTTTGGCTTTAAAGAACCTATAATAAGCCACAATCCAAACAGGCTCTTAGTCTACCCATGTTGATCATTGAACATCTTGGGCAGAAGGAAAACAAATTTCGAACTGTGGCAATAGGCTTGGCTATAATTAGATTAAGAAGAAAACAAGAATGTGTAAATGCGGAAGTGTGGTAATACGAAGAGAGAAACATAAAAGCTAATGGGGAGGAAGAGTCATTACTCTGGCTATAACTCTTTCCACAAACCATTTACTGTTCTCCAGAAGATTTAATAAATGTAACATTATTTTATAGGTTTTAGAGTCCAAGTCTATATTATTAGGAGAAAAATGGGTGGGATGGATGGACGTATTCTATTTTGATAACTTGAAGTCACTGATAAATAAGATACAATGTATTCTGTTTTGTTAACTTGAGTTGTTATTGGAGGCCCTTTCTTAGTGGATCTAGCATAATTTTTTTTATTTTTAATTACATTTCGATTTGTAGACGTGTATAAATGTAGATAGAGGAGCTCGTCATTGTATTTGAGATTCCAAATCTTGAAGAGGGTTAATTGCAGATAATGCTTGATTGACCAGTTTGCTTAACTCTGTTATTTCATGTAGGTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAGGTTTTGTGCAAAAAACTCTATTGCACTATGTTTACTGTTGCTACTTGTAAAATAAAGGAAAAAAGTAATAACTATGTTTATGGTGTTATTATCTTTGCATTTGTATATTTGGGTTTGTGGGGTAAGATTTCTCAAAATTTTGCCAATTGACATAAACTCTGCTTGGAAATTATTTCATTCTGTGTGTGGTTATATGTCATTTGATGATGAATATTTTGTACTTCCTTTGGAACAAGTTGAAGTTTATATAGCAATTTCTATTTTGGGACATCAAGGATGTTTGCCACCTGTCCATCAACAATATTGTTCTGCATCTTTCAGAAATTTCAAGAATCTTAAGTTTTTTACTATCTTCACAAATTCATCCAATGTATCCGTGACAGACTAGCTTTGAGAAACTGTCTTAGTAATTTCTTTGATTACTAATGACCAATATAGTAGAAATGTCAACTGAGCCATCTTACACTTCCTCCCTAGTCAAATCCTATCACACAATTAATTGGCTGGAGTATTAGAGTTCTAGTCTGGTTCATCGGGCTTTGCATTGTTGCAATGTTTGCGTATTTGATATGAGTCTTGCATGTTAAGGCTGAAGGAGATTAGAGTTATTCAATGATTAATGGATCTTTGAAGTCCTTATTTTCTTAAACTAACATTTTGAAAATTGAAACTCTAAACAGAAATATCAAGTAATGAGTGTATATATAACCTTATTCTACTACCTGACTAACTTATATAGTCTCGTTTATTTCAATATAAATGTGGAATTTTGCATGCTCAGAAGGAAACATTTCTTATCTTTTATCCAACGACTGTTTTTTCAGAAATTTACAATTTTCTCCACCCTCTACACTAGAGGGGAACCAACTTCAGAATAATGATTGTTTTGGTATCTTCCTTTTTTTTGCTTCAGGCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCACGTAATATCTAAGGGCTCACTTTTAGTTCTCCTGTTTGATGATTTGTCATAATGGCGTCCATTTTCCTCTTGAATTGTGCTTTAACTTTTAAGTACTATTTTCCTTGCAGAACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAGGTGCATGTTTAGTTTATTACTTTTCCTAATTTGTTTAGAGTATTGTGTACAATACCTACATGTTTTACTTCATCTTTGGTGGTATTTAGAGAGTTCCTGCTATGATTAAGTGAATGTGGTCTAAACCTTAGTGCAAAGGCCGAGGGCCACTGTAAGTCTTGGGGTCTCTCTGTGCCTTGCAGCAATATAACTTTGTGCTTGTGAAAAACATTAGCTGTTAGATTTGTCAATTCAGATCTGGTTCATTATAGTTAAGATCCTTGGTCTGGCTCTTGCTGATGGCGGGAAATTTGCTATACCTTTGCACTAAAATAGTAAAGAAGGTAAACTGTGTGAAAAAGAAAAAAATGTTGTAGACAACTCAGTGGAGAGTTGCTGGATGTTCCCAATTTTTACCTTCTGTGCACAAACTTTCAAATGTTGGAACTGAAATCATAATCAGCATTCTATTTTCTCTTCATCATTACTGAGCACCATTTGTCTAGATGTTGCAACTGTCACATAATTGTTTTACCTCTCATAGCATACATTTGTCTGGTGATTTCTGATCTTCTTTTCTTTTTTCTTTTTTTTTCAGGAAGCGGAGAAGCACCTATCTGAAA</genome_strand>
        <mrna_strand>TGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCAC.............................................................................................................AACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGGAAAAGCACCTATCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294763" ref_strand="-" ref_description="SGN-E294763 [cLET-17-O19](-)">
      <seq>tcacatagcaatgattaccttgaaatatgtcgctgttacaaggctatatatgagatcccttccgtgaaagaagacccagcacagtggataccagttctgaggaaaatttgctggtacttggtattgtctccccatgattctatgcaatcaagtcttcataactcaactttggaggacaaaaatctttcagaaattcctcatttcaggctgcttctgaagcaattgattaccatggaagtcattcagtggactgctttatggaacacattcaaggatgagtttgaaaatgagaagaatatgcctggtggcactttgggggacaaggctgctgaagacctcaaactgagagttattgagcacaacatccttgtcgtctcaaaatactactcaagaataaccttgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="33562" stop="30069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33262" g_stop="33170" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33169" i_stop="31704" i_length="1466">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31703" g_stop="31591" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="206" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31590" i_stop="30678" i_length="913">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30677" g_stop="30524" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="360" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30523" i_stop="30415" i_length="109">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30414" g_stop="30369" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="406" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E294763" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294763" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33262" e_stop="33170"/>
          <exon e_start="31703" e_stop="31591"/>
          <exon e_start="30677" e_stop="30524"/>
          <exon e_start="30414" e_stop="30369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCAGTAAGATCCCTTTCATGAATTACTCACATTCTGCATAAATTATAATTTCGAGACGTTGCACGTGGTATTATTCGATGGAAAATCAGTTTTGAATTTTTTAAGTAGTAAGTCTATATAATGTAGTGTTGGTTAATGAGCAATTCTTTTCAGAAAAATATAACAATAATCATTCTGCTGCACAATATCATTTGCCTGGATGCCTTAAATGATATTTCACTTCAAAAAAAATAAAAATTCAAAATATGTGACAACTAAATTGATTTACCAATAAAAGGTATGAACTCTGACAAAAGTAAATGGGTTGGGAATTATTAATCTGTTGTAACAGATACGTCACTGCTGCATAGCTTTAAGATTAGGTGACAATTAAATTAATTTACACCTACCTGAAAATTCTAATTGCTAAATCAAGTAGAGGTGATACAAAACCATCAGATATGTCAAATTCATAAAGAGACACTCTTTCTTCCCTATATTGGGAAACAAATTATTTAAGAATAGAAGATATAGGATTAGTTTTTCCCTGGTATCATATGATAATTGTGAGCTGGGCTTGTATTCTTATGCAGCTAGTCAGGCTTCTCTTCATCTAACAAGATAAGGGTCGGCATTCTTTTCAGTTTTCTAGAAAAGGGGGTAGGCATCCTTTTCATCTGTCAGAAAGATTTGGGTTGGGTTGGGGGGGGGGGGGCTTTATTATTTAGCCTGTTTGGATTACCTTTTGGCTTGTGACATGAAGGCATAAGTTAGAAATTTTTACTTATGGCTTTTAGCTTATTTTTGATATTTTGGTTTAAAAACATGTGCTTATAAGCACTTTTTTATTTTACCTAGACACTTCAAAGCTGCTTAAAAACTATTTTGGCTTTAAAGAACCTATAATAAGCCACAATCCAAACAGGCTCTTAGTCTACCCATGTTGATCATTGAACATCTTGGGCAGAAGGAAAACAAATTTCGAACTGTGGCAATAGGCTTGGCTATAATTAGATTAAGAAGAAAACAAGAATGTGTAAATGCGGAAGTGTGGTAATACGAAGAGAGAAACATAAAAGCTAATGGGGAGGAAGAGTCATTACTCTGGCTATAACTCTTTCCACAAACCATTTACTGTTCTCCAGAAGATTTAATAAATGTAACATTATTTTATAGGTTTTAGAGTCCAAGTCTATATTATTAGGAGAAAAATGGGTGGGATGGATGGACGTATTCTATTTTGATAACTTGAAGTCACTGATAAATAAGATACAATGTATTCTGTTTTGTTAACTTGAGTTGTTATTGGAGGCCCTTTCTTAGTGGATCTAGCATAATTTTTTTTATTTTTAATTACATTTCGATTTGTAGACGTGTATAAATGTAGATAGAGGAGCTCGTCATTGTATTTGAGATTCCAAATCTTGAAGAGGGTTAATTGCAGATAATGCTTGATTGACCAGTTTGCTTAACTCTGTTATTTCATGTAGGTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAGGTTTTGTGCAAAAAACTCTATTGCACTATGTTTACTGTTGCTACTTGTAAAATAAAGGAAAAAAGTAATAACTATGTTTATGGTGTTATTATCTTTGCATTTGTATATTTGGGTTTGTGGGGTAAGATTTCTCAAAATTTTGCCAATTGACATAAACTCTGCTTGGAAATTATTTCATTCTGTGTGTGGTTATATGTCATTTGATGATGAATATTTTGTACTTCCTTTGGAACAAGTTGAAGTTTATATAGCAATTTCTATTTTGGGACATCAAGGATGTTTGCCACCTGTCCATCAACAATATTGTTCTGCATCTTTCAGAAATTTCAAGAATCTTAAGTTTTTTACTATCTTCACAAATTCATCCAATGTATCCGTGACAGACTAGCTTTGAGAAACTGTCTTAGTAATTTCTTTGATTACTAATGACCAATATAGTAGAAATGTCAACTGAGCCATCTTACACTTCCTCCCTAGTCAAATCCTATCACACAATTAATTGGCTGGAGTATTAGAGTTCTAGTCTGGTTCATCGGGCTTTGCATTGTTGCAATGTTTGCGTATTTGATATGAGTCTTGCATGTTAAGGCTGAAGGAGATTAGAGTTATTCAATGATTAATGGATCTTTGAAGTCCTTATTTTCTTAAACTAACATTTTGAAAATTGAAACTCTAAACAGAAATATCAAGTAATGAGTGTATATATAACCTTATTCTACTACCTGACTAACTTATATAGTCTCGTTTATTTCAATATAAATGTGGAATTTTGCATGCTCAGAAGGAAACATTTCTTATCTTTTATCCAACGACTGTTTTTTCAGAAATTTACAATTTTCTCCACCCTCTACACTAGAGGGGAACCAACTTCAGAATAATGATTGTTTTGGTATCTTCCTTTTTTTTGCTTCAGGCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCACGTAATATCTAAGGGCTCACTTTTAGTTCTCCTGTTTGATGATTTGTCATAATGGCGTCCATTTTCCTCTTGAATTGTGCTTTAACTTTTAAGTACTATTTTCCTTGCAGAACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGA</genome_strand>
        <mrna_strand>TCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCAC.............................................................................................................AACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294762" ref_strand="+" ref_description="SGN-E294762 [cLET-17-O19]">
      <seq>tcacatagcaatgattaccttgaaatatgtcgctgttacaaggctatatatgagatcccttccgtgaaagaagacccagcacagtggataccagttctgaggaaaatttgctggtacttggtattgtctccccatgattctatgcaatcaagtcttcataactcaactttggaggacaaaaatctttcagaaattcctcatttcaggctgcttctgaagcaattgattaccatggaagtcattcagtggactgctttatggaacacattcaaggatgagtttgaaaatgagaagaatatgcctggtggcactttgggggacaaggctgctgaagacctcaaactgagagttattgagcacaacatccttgtcgtctcaaaatactactcaagaataaccttgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="33562" stop="30069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33262" g_stop="33170" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33169" i_stop="31704" i_length="1466">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31703" g_stop="31591" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="206" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31590" i_stop="30678" i_length="913">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30677" g_stop="30524" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="360" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30523" i_stop="30415" i_length="109">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30414" g_stop="30369" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="406" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E294762" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33262" e_stop="33170"/>
          <exon e_start="31703" e_stop="31591"/>
          <exon e_start="30677" e_stop="30524"/>
          <exon e_start="30414" e_stop="30369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCAGTAAGATCCCTTTCATGAATTACTCACATTCTGCATAAATTATAATTTCGAGACGTTGCACGTGGTATTATTCGATGGAAAATCAGTTTTGAATTTTTTAAGTAGTAAGTCTATATAATGTAGTGTTGGTTAATGAGCAATTCTTTTCAGAAAAATATAACAATAATCATTCTGCTGCACAATATCATTTGCCTGGATGCCTTAAATGATATTTCACTTCAAAAAAAATAAAAATTCAAAATATGTGACAACTAAATTGATTTACCAATAAAAGGTATGAACTCTGACAAAAGTAAATGGGTTGGGAATTATTAATCTGTTGTAACAGATACGTCACTGCTGCATAGCTTTAAGATTAGGTGACAATTAAATTAATTTACACCTACCTGAAAATTCTAATTGCTAAATCAAGTAGAGGTGATACAAAACCATCAGATATGTCAAATTCATAAAGAGACACTCTTTCTTCCCTATATTGGGAAACAAATTATTTAAGAATAGAAGATATAGGATTAGTTTTTCCCTGGTATCATATGATAATTGTGAGCTGGGCTTGTATTCTTATGCAGCTAGTCAGGCTTCTCTTCATCTAACAAGATAAGGGTCGGCATTCTTTTCAGTTTTCTAGAAAAGGGGGTAGGCATCCTTTTCATCTGTCAGAAAGATTTGGGTTGGGTTGGGGGGGGGGGGGCTTTATTATTTAGCCTGTTTGGATTACCTTTTGGCTTGTGACATGAAGGCATAAGTTAGAAATTTTTACTTATGGCTTTTAGCTTATTTTTGATATTTTGGTTTAAAAACATGTGCTTATAAGCACTTTTTTATTTTACCTAGACACTTCAAAGCTGCTTAAAAACTATTTTGGCTTTAAAGAACCTATAATAAGCCACAATCCAAACAGGCTCTTAGTCTACCCATGTTGATCATTGAACATCTTGGGCAGAAGGAAAACAAATTTCGAACTGTGGCAATAGGCTTGGCTATAATTAGATTAAGAAGAAAACAAGAATGTGTAAATGCGGAAGTGTGGTAATACGAAGAGAGAAACATAAAAGCTAATGGGGAGGAAGAGTCATTACTCTGGCTATAACTCTTTCCACAAACCATTTACTGTTCTCCAGAAGATTTAATAAATGTAACATTATTTTATAGGTTTTAGAGTCCAAGTCTATATTATTAGGAGAAAAATGGGTGGGATGGATGGACGTATTCTATTTTGATAACTTGAAGTCACTGATAAATAAGATACAATGTATTCTGTTTTGTTAACTTGAGTTGTTATTGGAGGCCCTTTCTTAGTGGATCTAGCATAATTTTTTTTATTTTTAATTACATTTCGATTTGTAGACGTGTATAAATGTAGATAGAGGAGCTCGTCATTGTATTTGAGATTCCAAATCTTGAAGAGGGTTAATTGCAGATAATGCTTGATTGACCAGTTTGCTTAACTCTGTTATTTCATGTAGGTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAGGTTTTGTGCAAAAAACTCTATTGCACTATGTTTACTGTTGCTACTTGTAAAATAAAGGAAAAAAGTAATAACTATGTTTATGGTGTTATTATCTTTGCATTTGTATATTTGGGTTTGTGGGGTAAGATTTCTCAAAATTTTGCCAATTGACATAAACTCTGCTTGGAAATTATTTCATTCTGTGTGTGGTTATATGTCATTTGATGATGAATATTTTGTACTTCCTTTGGAACAAGTTGAAGTTTATATAGCAATTTCTATTTTGGGACATCAAGGATGTTTGCCACCTGTCCATCAACAATATTGTTCTGCATCTTTCAGAAATTTCAAGAATCTTAAGTTTTTTACTATCTTCACAAATTCATCCAATGTATCCGTGACAGACTAGCTTTGAGAAACTGTCTTAGTAATTTCTTTGATTACTAATGACCAATATAGTAGAAATGTCAACTGAGCCATCTTACACTTCCTCCCTAGTCAAATCCTATCACACAATTAATTGGCTGGAGTATTAGAGTTCTAGTCTGGTTCATCGGGCTTTGCATTGTTGCAATGTTTGCGTATTTGATATGAGTCTTGCATGTTAAGGCTGAAGGAGATTAGAGTTATTCAATGATTAATGGATCTTTGAAGTCCTTATTTTCTTAAACTAACATTTTGAAAATTGAAACTCTAAACAGAAATATCAAGTAATGAGTGTATATATAACCTTATTCTACTACCTGACTAACTTATATAGTCTCGTTTATTTCAATATAAATGTGGAATTTTGCATGCTCAGAAGGAAACATTTCTTATCTTTTATCCAACGACTGTTTTTTCAGAAATTTACAATTTTCTCCACCCTCTACACTAGAGGGGAACCAACTTCAGAATAATGATTGTTTTGGTATCTTCCTTTTTTTTGCTTCAGGCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCACGTAATATCTAAGGGCTCACTTTTAGTTCTCCTGTTTGATGATTTGTCATAATGGCGTCCATTTTCCTCTTGAATTGTGCTTTAACTTTTAAGTACTATTTTCCTTGCAGAACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGA</genome_strand>
        <mrna_strand>TCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCAC.............................................................................................................AACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336037" ref_strand="+" ref_description="SGN-E336037 [cTOE-12-A11]">
      <seq>atagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaaaaactcataggcgaggctgctgatttgatgcaagaagttgctgttgaaacctttggagcgatggcaaaaactgaaaagatagcctttattcttgaacaagttcgtctatgcttagatcataaagattatgttcgtgctcaaattctctcgagaaagatcaatcccagagtgtttgaagctgatccatctaaagaaaagaagaaagcaaaggagggtgaaaatgtggttgaggaacctgctgcagatattccgtcactgccagagttgaagcagatctactatcaattaatgattaggtattactcacatagcaatgattaccttgaaatatgtcgctgttacaaggctatatatgagatcccttccgtgaaagaagacccagcacagtggataccagttctgaggaaaatttgctggtacttggtattgtctccccatgattctatgcaatcaagtcttcataactcaactttggaggacaaaaatctttcagaaattcctcatttcaggctgcttctgaagcaattgattaccatggaagtcattcagtggactgctttatggaacacattcaaggatgagtttgaaaatgagaagaatatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="35398" stop="30282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35098" g_stop="35057" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="147" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="204" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34548" g_stop="34352" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="401" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34351" i_stop="33270" i_length="1082">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33269" g_stop="33170" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="501" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33169" i_stop="31704" i_length="1466">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31703" g_stop="31591" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="614" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31590" i_stop="30678" i_length="913">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30677" g_stop="30582" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="710" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E336037" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35098" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34352"/>
          <exon e_start="33269" e_stop="33170"/>
          <exon e_start="31703" e_stop="31591"/>
          <exon e_start="30677" e_stop="30582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAGGTACATCTGATTATGTTATAAATGTGGCTAAGCAAGTTACCTTCTCTAGAATTGTTGAATGCAACACCCTTCTTACTATCAAGCATTCAGCAGATTCATGCAATCCGAGTATAATTTTAAAATAACGTAATTTATTTTCTTAAGATAACTTGGAATAGTTAATGTGTTCATACTTAAAGCTTGCAACTTCTGCACTTAGTTTTGGTGATTTGTGCAGTATCGGGACTGAAGATATTAGTATTTAAGGCACATAATTTGCTTATTTGCTCATTTTCTGGCAGTTTGTCTACATCTTACTTACATTTGAGTTTGGGTTAGACATGTTTTCTGAATAAAGATTCTGATTGTCTTCATTTTATATATGTTTTAGTTGTCTTTGAGGATTCTAGTTTCCTCCCCTTATCAACTGTGCCAAAGGATTAAAGTGAATGTTATCTGTGCTTTGTCAGAAATGTTTGTTTTTAGTAGAAACTTCATATTTTTTCCGGAAGAGATTATACACCTTGGATGTCATTGAATAAATAGAGACTGAAGTAAGTTCTGCAGAGCTCCATGTTTGAGATAGTTCCATATTTGCTCTGTTTGCTTTGGTTTATTTGTGGATGGACTTCCATTCTTTAAATTTCATTGGGAGCAGGTGACTAAACTTTAGAAGACAATTGTAGTTCTGCTATACTTTGCACTTCTTTTCAAGATGATAAGAAGTGATTGAAGTTGTATTCAGAATACATGACAATTAAATGACATGGTTATGCTCATCTACACCCTATAAATTCACCTAAGCTGATACTGACTTTTGAAGTAGTAAAGGTCTTTCAAAGTTGCATCACCTATCAAATGTAAATGAAAGTTATTTTATTTATCATAGAATAGTTTTTGCCATGTCTCCAAATTTTTTAGGTTGGAGTGACCTTGCATGATTTTCTTAATTGTTGATTTAGCAGGTCAGCAATCCTAAGGCATGAGATTCTTACTTATTTAGAGTGATATAGCTCTAGATGAATGAATGATTTCATTTGGAGATCGTTTTTTGCATTTGTGTATCTTAAACTGGTGTGTCATTCTTTCTACTTCTGTTGCAGGTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCAGTAAGATCCCTTTCATGAATTACTCACATTCTGCATAAATTATAATTTCGAGACGTTGCACGTGGTATTATTCGATGGAAAATCAGTTTTGAATTTTTTAAGTAGTAAGTCTATATAATGTAGTGTTGGTTAATGAGCAATTCTTTTCAGAAAAATATAACAATAATCATTCTGCTGCACAATATCATTTGCCTGGATGCCTTAAATGATATTTCACTTCAAAAAAAATAAAAATTCAAAATATGTGACAACTAAATTGATTTACCAATAAAAGGTATGAACTCTGACAAAAGTAAATGGGTTGGGAATTATTAATCTGTTGTAACAGATACGTCACTGCTGCATAGCTTTAAGATTAGGTGACAATTAAATTAATTTACACCTACCTGAAAATTCTAATTGCTAAATCAAGTAGAGGTGATACAAAACCATCAGATATGTCAAATTCATAAAGAGACACTCTTTCTTCCCTATATTGGGAAACAAATTATTTAAGAATAGAAGATATAGGATTAGTTTTTCCCTGGTATCATATGATAATTGTGAGCTGGGCTTGTATTCTTATGCAGCTAGTCAGGCTTCTCTTCATCTAACAAGATAAGGGTCGGCATTCTTTTCAGTTTTCTAGAAAAGGGGGTAGGCATCCTTTTCATCTGTCAGAAAGATTTGGGTTGGGTTGGGGGGGGGGGGGCTTTATTATTTAGCCTGTTTGGATTACCTTTTGGCTTGTGACATGAAGGCATAAGTTAGAAATTTTTACTTATGGCTTTTAGCTTATTTTTGATATTTTGGTTTAAAAACATGTGCTTATAAGCACTTTTTTATTTTACCTAGACACTTCAAAGCTGCTTAAAAACTATTTTGGCTTTAAAGAACCTATAATAAGCCACAATCCAAACAGGCTCTTAGTCTACCCATGTTGATCATTGAACATCTTGGGCAGAAGGAAAACAAATTTCGAACTGTGGCAATAGGCTTGGCTATAATTAGATTAAGAAGAAAACAAGAATGTGTAAATGCGGAAGTGTGGTAATACGAAGAGAGAAACATAAAAGCTAATGGGGAGGAAGAGTCATTACTCTGGCTATAACTCTTTCCACAAACCATTTACTGTTCTCCAGAAGATTTAATAAATGTAACATTATTTTATAGGTTTTAGAGTCCAAGTCTATATTATTAGGAGAAAAATGGGTGGGATGGATGGACGTATTCTATTTTGATAACTTGAAGTCACTGATAAATAAGATACAATGTATTCTGTTTTGTTAACTTGAGTTGTTATTGGAGGCCCTTTCTTAGTGGATCTAGCATAATTTTTTTTATTTTTAATTACATTTCGATTTGTAGACGTGTATAAATGTAGATAGAGGAGCTCGTCATTGTATTTGAGATTCCAAATCTTGAAGAGGGTTAATTGCAGATAATGCTTGATTGACCAGTTTGCTTAACTCTGTTATTTCATGTAGGTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAGGTTTTGTGCAAAAAACTCTATTGCACTATGTTTACTGTTGCTACTTGTAAAATAAAGGAAAAAAGTAATAACTATGTTTATGGTGTTATTATCTTTGCATTTGTATATTTGGGTTTGTGGGGTAAGATTTCTCAAAATTTTGCCAATTGACATAAACTCTGCTTGGAAATTATTTCATTCTGTGTGTGGTTATATGTCATTTGATGATGAATATTTTGTACTTCCTTTGGAACAAGTTGAAGTTTATATAGCAATTTCTATTTTGGGACATCAAGGATGTTTGCCACCTGTCCATCAACAATATTGTTCTGCATCTTTCAGAAATTTCAAGAATCTTAAGTTTTTTACTATCTTCACAAATTCATCCAATGTATCCGTGACAGACTAGCTTTGAGAAACTGTCTTAGTAATTTCTTTGATTACTAATGACCAATATAGTAGAAATGTCAACTGAGCCATCTTACACTTCCTCCCTAGTCAAATCCTATCACACAATTAATTGGCTGGAGTATTAGAGTTCTAGTCTGGTTCATCGGGCTTTGCATTGTTGCAATGTTTGCGTATTTGATATGAGTCTTGCATGTTAAGGCTGAAGGAGATTAGAGTTATTCAATGATTAATGGATCTTTGAAGTCCTTATTTTCTTAAACTAACATTTTGAAAATTGAAACTCTAAACAGAAATATCAAGTAATGAGTGTATATATAACCTTATTCTACTACCTGACTAACTTATATAGTCTCGTTTATTTCAATATAAATGTGGAATTTTGCATGCTCAGAAGGAAACATTTCTTATCTTTTATCCAACGACTGTTTTTTCAGAAATTTACAATTTTCTCCACCCTCTACACTAGAGGGGAACCAACTTCAGAATAATGATTGTTTTGGTATCTTCCTTTTTTTTGCTTCAGGCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCC</genome_strand>
        <mrna_strand>ATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCT..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292192" ref_strand="+" ref_description="SGN-E292192 [cLET-1-F13]">
      <seq>ttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaaaaactcataggcgaggctgctgatttgatgcaagaagttgctgttgaaacctttggagcgatggcacaaactgaaaagatagcctttattcttgaacaagttcgtctatgcttagatcataaagattatgttcgtgctcaaattctctcgagaaagatcaatcccagagtgtttgaagctgatccatctaaagaaaagaagaaagcacaggagggtgaaaatgtggatgaggaacctgctgcagatattccgtcactgccagagttgaagcagatctactatcaattaatgattaggtattactcacatagcaatgattaccttgaaatatgtcgctgttacaaggctatatatgagatcccttccgtgaaagaagacccagcacagtggataccagttctgaggaaaatttgctggtacttggtattgtctccccatgattctatgcaatcaagtcttcataactcaactttggaggacaaaaatctttcagaaatttctcatttcacgctgcttctgaagcaattgattaccatggaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="35266" stop="30344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34966" g_stop="34869" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="155" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34548" g_stop="34352" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="352" r_length="197" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34351" i_stop="33270" i_length="1082">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33269" g_stop="33170" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="452" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33169" i_stop="31704" i_length="1466">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31703" g_stop="31591" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="565" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31590" i_stop="30678" i_length="913">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30677" g_stop="30644" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="599" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E292192" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34966" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34352"/>
          <exon e_start="33269" e_stop="33170"/>
          <exon e_start="31703" e_stop="31591"/>
          <exon e_start="30677" e_stop="30644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAGGTACATCTGATTATGTTATAAATGTGGCTAAGCAAGTTACCTTCTCTAGAATTGTTGAATGCAACACCCTTCTTACTATCAAGCATTCAGCAGATTCATGCAATCCGAGTATAATTTTAAAATAACGTAATTTATTTTCTTAAGATAACTTGGAATAGTTAATGTGTTCATACTTAAAGCTTGCAACTTCTGCACTTAGTTTTGGTGATTTGTGCAGTATCGGGACTGAAGATATTAGTATTTAAGGCACATAATTTGCTTATTTGCTCATTTTCTGGCAGTTTGTCTACATCTTACTTACATTTGAGTTTGGGTTAGACATGTTTTCTGAATAAAGATTCTGATTGTCTTCATTTTATATATGTTTTAGTTGTCTTTGAGGATTCTAGTTTCCTCCCCTTATCAACTGTGCCAAAGGATTAAAGTGAATGTTATCTGTGCTTTGTCAGAAATGTTTGTTTTTAGTAGAAACTTCATATTTTTTCCGGAAGAGATTATACACCTTGGATGTCATTGAATAAATAGAGACTGAAGTAAGTTCTGCAGAGCTCCATGTTTGAGATAGTTCCATATTTGCTCTGTTTGCTTTGGTTTATTTGTGGATGGACTTCCATTCTTTAAATTTCATTGGGAGCAGGTGACTAAACTTTAGAAGACAATTGTAGTTCTGCTATACTTTGCACTTCTTTTCAAGATGATAAGAAGTGATTGAAGTTGTATTCAGAATACATGACAATTAAATGACATGGTTATGCTCATCTACACCCTATAAATTCACCTAAGCTGATACTGACTTTTGAAGTAGTAAAGGTCTTTCAAAGTTGCATCACCTATCAAATGTAAATGAAAGTTATTTTATTTATCATAGAATAGTTTTTGCCATGTCTCCAAATTTTTTAGGTTGGAGTGACCTTGCATGATTTTCTTAATTGTTGATTTAGCAGGTCAGCAATCCTAAGGCATGAGATTCTTACTTATTTAGAGTGATATAGCTCTAGATGAATGAATGATTTCATTTGGAGATCGTTTTTTGCATTTGTGTATCTTAAACTGGTGTGTCATTCTTTCTACTTCTGTTGCAGGTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCAGTAAGATCCCTTTCATGAATTACTCACATTCTGCATAAATTATAATTTCGAGACGTTGCACGTGGTATTATTCGATGGAAAATCAGTTTTGAATTTTTTAAGTAGTAAGTCTATATAATGTAGTGTTGGTTAATGAGCAATTCTTTTCAGAAAAATATAACAATAATCATTCTGCTGCACAATATCATTTGCCTGGATGCCTTAAATGATATTTCACTTCAAAAAAAATAAAAATTCAAAATATGTGACAACTAAATTGATTTACCAATAAAAGGTATGAACTCTGACAAAAGTAAATGGGTTGGGAATTATTAATCTGTTGTAACAGATACGTCACTGCTGCATAGCTTTAAGATTAGGTGACAATTAAATTAATTTACACCTACCTGAAAATTCTAATTGCTAAATCAAGTAGAGGTGATACAAAACCATCAGATATGTCAAATTCATAAAGAGACACTCTTTCTTCCCTATATTGGGAAACAAATTATTTAAGAATAGAAGATATAGGATTAGTTTTTCCCTGGTATCATATGATAATTGTGAGCTGGGCTTGTATTCTTATGCAGCTAGTCAGGCTTCTCTTCATCTAACAAGATAAGGGTCGGCATTCTTTTCAGTTTTCTAGAAAAGGGGGTAGGCATCCTTTTCATCTGTCAGAAAGATTTGGGTTGGGTTGGGGGGGGGGGGGCTTTATTATTTAGCCTGTTTGGATTACCTTTTGGCTTGTGACATGAAGGCATAAGTTAGAAATTTTTACTTATGGCTTTTAGCTTATTTTTGATATTTTGGTTTAAAAACATGTGCTTATAAGCACTTTTTTATTTTACCTAGACACTTCAAAGCTGCTTAAAAACTATTTTGGCTTTAAAGAACCTATAATAAGCCACAATCCAAACAGGCTCTTAGTCTACCCATGTTGATCATTGAACATCTTGGGCAGAAGGAAAACAAATTTCGAACTGTGGCAATAGGCTTGGCTATAATTAGATTAAGAAGAAAACAAGAATGTGTAAATGCGGAAGTGTGGTAATACGAAGAGAGAAACATAAAAGCTAATGGGGAGGAAGAGTCATTACTCTGGCTATAACTCTTTCCACAAACCATTTACTGTTCTCCAGAAGATTTAATAAATGTAACATTATTTTATAGGTTTTAGAGTCCAAGTCTATATTATTAGGAGAAAAATGGGTGGGATGGATGGACGTATTCTATTTTGATAACTTGAAGTCACTGATAAATAAGATACAATGTATTCTGTTTTGTTAACTTGAGTTGTTATTGGAGGCCCTTTCTTAGTGGATCTAGCATAATTTTTTTTATTTTTAATTACATTTCGATTTGTAGACGTGTATAAATGTAGATAGAGGAGCTCGTCATTGTATTTGAGATTCCAAATCTTGAAGAGGGTTAATTGCAGATAATGCTTGATTGACCAGTTTGCTTAACTCTGTTATTTCATGTAGGTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAGGTTTTGTGCAAAAAACTCTATTGCACTATGTTTACTGTTGCTACTTGTAAAATAAAGGAAAAAAGTAATAACTATGTTTATGGTGTTATTATCTTTGCATTTGTATATTTGGGTTTGTGGGGTAAGATTTCTCAAAATTTTGCCAATTGACATAAACTCTGCTTGGAAATTATTTCATTCTGTGTGTGGTTATATGTCATTTGATGATGAATATTTTGTACTTCCTTTGGAACAAGTTGAAGTTTATATAGCAATTTCTATTTTGGGACATCAAGGATGTTTGCCACCTGTCCATCAACAATATTGTTCTGCATCTTTCAGAAATTTCAAGAATCTTAAGTTTTTTACTATCTTCACAAATTCATCCAATGTATCCGTGACAGACTAGCTTTGAGAAACTGTCTTAGTAATTTCTTTGATTACTAATGACCAATATAGTAGAAATGTCAACTGAGCCATCTTACACTTCCTCCCTAGTCAAATCCTATCACACAATTAATTGGCTGGAGTATTAGAGTTCTAGTCTGGTTCATCGGGCTTTGCATTGTTGCAATGTTTGCGTATTTGATATGAGTCTTGCATGTTAAGGCTGAAGGAGATTAGAGTTATTCAATGATTAATGGATCTTTGAAGTCCTTATTTTCTTAAACTAACATTTTGAAAATTGAAACTCTAAACAGAAATATCAAGTAATGAGTGTATATATAACCTTATTCTACTACCTGACTAACTTATATAGTCTCGTTTATTTCAATATAAATGTGGAATTTTGCATGCTCAGAAGGAAACATTTCTTATCTTTTATCCAACGACTGTTTTTTCAGAAATTTACAATTTTCTCCACCCTCTACACTAGAGGGGAACCAACTTCAGAATAATGATTGTTTTGGTATCTTCCTTTTTTTTGCTTCAGGCTGCTTCTGAAGCAATTGATTACCATGGAAGTC</genome_strand>
        <mrna_strand>TTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCT..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCACAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCACAGGAGGGTGAAAATGTGGATGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTTCTCATTTCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTCTGAAGCAATTGATTACCATGGAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582135" ref_strand="+" ref_description="SGN-E582135 [7768]">
      <seq>cacctatcaaatgtaaatgaaagtttattttatttatcatagaatagttcttgccacgcctccaaaattttttaagttggagtgacctttcatgattttcttaattattgatttagtaggtcatcaatcctaaggcatgacattcttacttatttagagtgatatagctctagaggaatgaatggtttttttgcatttgtgcatcttaaactggagtgtcatttgttctacttctgttgcagtgtattactcacatagcaatgattaccttgaaatatgtcgctgttacaaggctatatatgagatcccttctgtgaaagaagacccagcacagtggataccagttctgaggaaaatttgctggtacttgggattgtgtccccatgattctatgcaatcaagtcttcataactcaactttggaggacacaaaatctttcacgaaattcctcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="33824" stop="31293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33524" g_stop="33170" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33169" i_stop="31704" i_length="1466">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.791" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31703" g_stop="31593" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="456" r_length="113" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E582135" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.022" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33524" e_stop="33170"/>
          <exon e_start="31703" e_stop="31593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTATCAAATGTAAATGAAAG-TTATTTTATTTATCATAGAATAGTTTTTGCCATGTCTCC-AAATTTTTTAGGTTGGAGTGACCTTGCATGATTTTCTTAATTGTTGATTTAGCAGGTCAGCAATCCTAAGGCATGAGATTCTTACTTATTTAGAGTGATATAGCTCTAGATGAATGAATGATTTCATTTGGAGATCGTTTTTTGCATTTGTGTATCTTAAACTGGTGTGTCATTCTTTCTACTTCTGTTGCAG-GTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCAGTAAGATCCCTTTCATGAATTACTCACATTCTGCATAAATTATAATTTCGAGACGTTGCACGTGGTATTATTCGATGGAAAATCAGTTTTGAATTTTTTAAGTAGTAAGTCTATATAATGTAGTGTTGGTTAATGAGCAATTCTTTTCAGAAAAATATAACAATAATCATTCTGCTGCACAATATCATTTGCCTGGATGCCTTAAATGATATTTCACTTCAAAAAAAATAAAAATTCAAAATATGTGACAACTAAATTGATTTACCAATAAAAGGTATGAACTCTGACAAAAGTAAATGGGTTGGGAATTATTAATCTGTTGTAACAGATACGTCACTGCTGCATAGCTTTAAGATTAGGTGACAATTAAATTAATTTACACCTACCTGAAAATTCTAATTGCTAAATCAAGTAGAGGTGATACAAAACCATCAGATATGTCAAATTCATAAAGAGACACTCTTTCTTCCCTATATTGGGAAACAAATTATTTAAGAATAGAAGATATAGGATTAGTTTTTCCCTGGTATCATATGATAATTGTGAGCTGGGCTTGTATTCTTATGCAGCTAGTCAGGCTTCTCTTCATCTAACAAGATAAGGGTCGGCATTCTTTTCAGTTTTCTAGAAAAGGGGGTAGGCATCCTTTTCATCTGTCAGAAAGATTTGGGTTGGGTTGGGGGGGGGGGGGCTTTATTATTTAGCCTGTTTGGATTACCTTTTGGCTTGTGACATGAAGGCATAAGTTAGAAATTTTTACTTATGGCTTTTAGCTTATTTTTGATATTTTGGTTTAAAAACATGTGCTTATAAGCACTTTTTTATTTTACCTAGACACTTCAAAGCTGCTTAAAAACTATTTTGGCTTTAAAGAACCTATAATAAGCCACAATCCAAACAGGCTCTTAGTCTACCCATGTTGATCATTGAACATCTTGGGCAGAAGGAAAACAAATTTCGAACTGTGGCAATAGGCTTGGCTATAATTAGATTAAGAAGAAAACAAGAATGTGTAAATGCGGAAGTGTGGTAATACGAAGAGAGAAACATAAAAGCTAATGGGGAGGAAGAGTCATTACTCTGGCTATAACTCTTTCCACAAACCATTTACTGTTCTCCAGAAGATTTAATAAATGTAACATTATTTTATAGGTTTTAGAGTCCAAGTCTATATTATTAGGAGAAAAATGGGTGGGATGGATGGACGTATTCTATTTTGATAACTTGAAGTCACTGATAAATAAGATACAATGTATTCTGTTTTGTTAACTTGAGTTGTTATTGGAGGCCCTTTCTTAGTGGATCTAGCATAATTTTTTTTATTTTTAATTACATTTCGATTTGTAGACGTGTATAAATGTAGATAGAGGAGCTCGTCATTGTATTTGAGATTCCAAATCTTGAAGAGGGTTAATTGCAGATAATGCTTGATTGACCAGTTTGCTTAACTCTGTTATTTCATGTAGGTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACA-AAAATCTTTCA-GAAATTCCTCATTTC</genome_strand>
        <mrna_strand>CACCTATCAAATGTAAATGAAAGTTTATTTTATTTATCATAGAATAGTTCTTGCCACGCCTCCAAAATTTTTTAAGTTGGAGTGACCTTTCATGATTTTCTTAATTATTGATTTAGTAGGTCATCAATCCTAAGGCATGACATTCTTACTTATTTAGAGTGATATAGCTCTAGA-G---GAATGA----A--T-G-G-T--TTTTTTGCATTTGTGCATCTTAAACTGGAGTGTCATTTGTTCTACTTCTGTTGCAGTGTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCTGTGAAAGAAGACCCAGCACAGTGGATACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGAGGAAAATTTGCTGGTACTTGGGATTGTGTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACACAAAATCTTTCACGAAATTCCTCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699048" ref_strand="+" ref_description="SGN-E699048 [FA08BH04]">
      <seq>cgattgaacagattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggtccaacaggccatgcaatacattgaccagacgcccgatcttgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaaaaactcataggcgaggctgctgatttgatgcaagaagttgctgttgaaacctttggagcgatggcaaaaactgaaaagataatctttatgatctaagcatagacgaacttgttcaagaataaagattatgttcgtgctcaaattctctcgagaaagatcaatcccagagtgtttgaagctgatccatctaaagaaaagaacaaagcaaaggagggtgaaaatgtggttgaggaacctgctgcacatattccgtcactgccagagttgaagcagatctactatcaattaatgattaggtattactcacatagcaatgattaccttgaaatatgtcgctgttacaaggctatatatgagatcccttccgtgaaagaagaccccgcacagtggataccagttctgaggaaaatttgctggtacttggtattgtctccccatgattctatgcaatcaagtcttcataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="37921" stop="31334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37623" g_stop="37574" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="158" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="263" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="321" r_length="58" r_score="0.842"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="0.82"/>
            <acceptor a_prob="0.904" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34548" g_stop="34352" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="517" r_length="196" r_score="0.929"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34351" i_stop="33270" i_length="1082">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33269" g_stop="33170" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="617" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33169" i_stop="31704" i_length="1466">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31703" g_stop="31634" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="687" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E699048" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37623" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34352"/>
          <exon e_start="33269" e_stop="33170"/>
          <exon e_start="31703" e_stop="31634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCT-TGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAGGTACATCTGATTATGTTATAAATGTGGCTAAGCAAGTTACCTTCTCTAGAATTGTTGAATGCAACACCCTTCTTACTATCAAGCATTCAGCAGATTCATGCAATCCGAGTATAATTTTAAAATAACGTAATTTATTTTCTTAAGATAACTTGGAATAGTTAATGTGTTCATACTTAAAGCTTGCAACTTCTGCACTTAGTTTTGGTGATTTGTGCAGTATCGGGACTGAAGATATTAGTATTTAAGGCACATAATTTGCTTATTTGCTCATTTTCTGGCAGTTTGTCTACATCTTACTTACATTTGAGTTTGGGTTAGACATGTTTTCTGAATAAAGATTCTGATTGTCTTCATTTTATATATGTTTTAGTTGTCTTTGAGGATTCTAGTTTCCTCCCCTTATCAACTGTGCCAAAGGATTAAAGTGAATGTTATCTGTGCTTTGTCAGAAATGTTTGTTTTTAGTAGAAACTTCATATTTTTTCCGGAAGAGATTATACACCTTGGATGTCATTGAATAAATAGAGACTGAAGTAAGTTCTGCAGAGCTCCATGTTTGAGATAGTTCCATATTTGCTCTGTTTGCTTTGGTTTATTTGTGGATGGACTTCCATTCTTTAAATTTCATTGGGAGCAGGTGACTAAACTTTAGAAGACAATTGTAGTTCTGCTATACTTTGCACTTCTTTTCAAGATGATAAGAAGTGATTGAAGTTGTATTCAGAATACATGACAATTAAATGACATGGTTATGCTCATCTACACCCTATAAATTCACCTAAGCTGATACTGACTTTTGAAGTAGTAAAGGTCTTTCAAAGTTGCATCACCTATCAAATGTAAATGAAAGTTATTTTATTTATCATAGAATAGTTTTTGCCATGTCTCCAAATTTTTTAGGTTGGAGTGACCTTGCATGATTTTCTTAATTGTTGATTTAGCAGGTCAGCAATCCTAAGGCATGAGATTCTTACTTATTTAGAGTGATATAGCTCTAGATGAATGAATGATTTCATTTGGAGATCGTTTTTTGCATTTGTGTATCTTAAACTGGTGTGTCATTCTTTCTACTTCTGTTGCAGGTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCAGTAAGATCCCTTTCATGAATTACTCACATTCTGCATAAATTATAATTTCGAGACGTTGCACGTGGTATTATTCGATGGAAAATCAGTTTTGAATTTTTTAAGTAGTAAGTCTATATAATGTAGTGTTGGTTAATGAGCAATTCTTTTCAGAAAAATATAACAATAATCATTCTGCTGCACAATATCATTTGCCTGGATGCCTTAAATGATATTTCACTTCAAAAAAAATAAAAATTCAAAATATGTGACAACTAAATTGATTTACCAATAAAAGGTATGAACTCTGACAAAAGTAAATGGGTTGGGAATTATTAATCTGTTGTAACAGATACGTCACTGCTGCATAGCTTTAAGATTAGGTGACAATTAAATTAATTTACACCTACCTGAAAATTCTAATTGCTAAATCAAGTAGAGGTGATACAAAACCATCAGATATGTCAAATTCATAAAGAGACACTCTTTCTTCCCTATATTGGGAAACAAATTATTTAAGAATAGAAGATATAGGATTAGTTTTTCCCTGGTATCATATGATAATTGTGAGCTGGGCTTGTATTCTTATGCAGCTAGTCAGGCTTCTCTTCATCTAACAAGATAAGGGTCGGCATTCTTTTCAGTTTTCTAGAAAAGGGGGTAGGCATCCTTTTCATCTGTCAGAAAGATTTGGGTTGGGTTGGGGGGGGGGGGGCTTTATTATTTAGCCTGTTTGGATTACCTTTTGGCTTGTGACATGAAGGCATAAGTTAGAAATTTTTACTTATGGCTTTTAGCTTATTTTTGATATTTTGGTTTAAAAACATGTGCTTATAAGCACTTTTTTATTTTACCTAGACACTTCAAAGCTGCTTAAAAACTATTTTGGCTTTAAAGAACCTATAATAAGCCACAATCCAAACAGGCTCTTAGTCTACCCATGTTGATCATTGAACATCTTGGGCAGAAGGAAAACAAATTTCGAACTGTGGCAATAGGCTTGGCTATAATTAGATTAAGAAGAAAACAAGAATGTGTAAATGCGGAAGTGTGGTAATACGAAGAGAGAAACATAAAAGCTAATGGGGAGGAAGAGTCATTACTCTGGCTATAACTCTTTCCACAAACCATTTACTGTTCTCCAGAAGATTTAATAAATGTAACATTATTTTATAGGTTTTAGAGTCCAAGTCTATATTATTAGGAGAAAAATGGGTGGGATGGATGGACGTATTCTATTTTGATAACTTGAAGTCACTGATAAATAAGATACAATGTATTCTGTTTTGTTAACTTGAGTTGTTATTGGAGGCCCTTTCTTAGTGGATCTAGCATAATTTTTTTTATTTTTAATTACATTTCGATTTGTAGACGTGTATAAATGTAGATAGAGGAGCTCGTCATTGTATTTGAGATTCCAAATCTTGAAGAGGGTTAATTGCAGATAATGCTTGATTGACCAGTTTGCTTAACTCTGTTATTTCATGTAGGTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACT</genome_strand>
        <mrna_strand>CGATTGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCT..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAATCTTTATGATCTAAGCAT.........................................................................................................................AGACGAACTTG-TTCAAGAATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAACAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCACATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCCGCACAGTGGATACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700123" ref_strand="+" ref_description="SGN-E700123 [FA12AG12]">
      <seq>gacatatcaatctcaatcgaactccgaaaaaaactcaataatcaatctggaaggtgatgggaaattggaggcgcaaattgaggtgcttctgaatgtagagaagcagatgaggcaagctggcgatgtcgctgctactagaaaagcagctatagacattcttcagctttgcttcgaagctcgcgcatggaaaactttaaatgaacagattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggtccaacaggccatgcaatacattgaccagacgcccgatcttgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaaaaactcataggcgaggctgctgatttgatgcaagaagttgctgttgaaacctttggagcgatggcaaaaactgaaaagatagcctttattcttgaacaagttcgtctatgcttagatcataaagattatgttcgtgctcaaattctctcgagaaagatcaatcccagagtgtttgaagctgatccatctaaagaaaagaagaaagcaaaggagggtgacaatgtggttgaggaacctgctgcagatattccgtcactgccacagttgaaccagatctactatcaattaatgattaagtattactcacatagcaatgattaccttgaaatatgtccctgttacaaggctatatatgaaatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38199" stop="32904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37899" g_stop="37852" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="244" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="352" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="457" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="514" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34548" g_stop="34352" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="711" r_length="197" r_score="0.980"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34351" i_stop="33270" i_length="1082">
            <donor d_prob="0.873" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33269" g_stop="33204" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="777" r_length="66" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E700123" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37899" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34352"/>
          <exon e_start="33269" e_stop="33204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGA-ATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAGGTACATCTGATTATGTTATAAATGTGGCTAAGCAAGTTACCTTCTCTAGAATTGTTGAATGCAACACCCTTCTTACTATCAAGCATTCAGCAGATTCATGCAATCCGAGTATAATTTTAAAATAACGTAATTTATTTTCTTAAGATAACTTGGAATAGTTAATGTGTTCATACTTAAAGCTTGCAACTTCTGCACTTAGTTTTGGTGATTTGTGCAGTATCGGGACTGAAGATATTAGTATTTAAGGCACATAATTTGCTTATTTGCTCATTTTCTGGCAGTTTGTCTACATCTTACTTACATTTGAGTTTGGGTTAGACATGTTTTCTGAATAAAGATTCTGATTGTCTTCATTTTATATATGTTTTAGTTGTCTTTGAGGATTCTAGTTTCCTCCCCTTATCAACTGTGCCAAAGGATTAAAGTGAATGTTATCTGTGCTTTGTCAGAAATGTTTGTTTTTAGTAGAAACTTCATATTTTTTCCGGAAGAGATTATACACCTTGGATGTCATTGAATAAATAGAGACTGAAGTAAGTTCTGCAGAGCTCCATGTTTGAGATAGTTCCATATTTGCTCTGTTTGCTTTGGTTTATTTGTGGATGGACTTCCATTCTTTAAATTTCATTGGGAGCAGGTGACTAAACTTTAGAAGACAATTGTAGTTCTGCTATACTTTGCACTTCTTTTCAAGATGATAAGAAGTGATTGAAGTTGTATTCAGAATACATGACAATTAAATGACATGGTTATGCTCATCTACACCCTATAAATTCACCTAAGCTGATACTGACTTTTGAAGTAGTAAAGGTCTTTCAAAGTTGCATCACCTATCAAATGTAAATGAAAGTTATTTTATTTATCATAGAATAGTTTTTGCCATGTCTCCAAATTTTTTAGGTTGGAGTGACCTTGCATGATTTTCTTAATTGTTGATTTAGCAGGTCAGCAATCCTAAGGCATGAGATTCTTACTTATTTAGAGTGATATAGCTCTAGATGAATGAATGATTTCATTTGGAGATCGTTTTTTGCATTTGTGTATCTTAAACTGGTGTGTCATTCTTTCTACTTCTGTTGCAGGTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCC</genome_strand>
        <mrna_strand>GACATATCAATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATCTG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCT..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGACAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCACAGTTGAACCAGATCTACTATCAATTAATGATTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTACTCACATAGCAATGATTACCTTGAAATATGTCCCTGTTACAAGGCTATATATGAAATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439493" ref_strand="+" ref_description="SGN-E439493 [cSTA-12-I8]">
      <seq>gaaatgcagctacagacattcttcagctttgctttgaagcctcgcgcatggaaaactttaaatgaacaaattgttctattgtctaagcgccgtggacaattgaaacaggcctgtaccaggccatggttcaacaagccatgccagtacattgaccagacccccgatattgacatcaagatagaacttatcaaaacacctgaacagtgtgtctgctggaaagatataccgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaaccaactcataggccaggctgctgatttgatgccaagaagttgcggttgaaacctttggagcgatggcaaaaactgaaaagatagcctttattcttgaacaagttcgtctatgccttagatcataaagaatatgttcgtgctcaaatactctcaagaaagatcaatcccagagtgtttgaagctgatccatctaaggaaaagaagaaagcaaaggagggtgaaaatgtggttgaggagcctgctgcagatattccgtcactgcccgagttgaagcagatctactatcaattaatgattaggtattactcacatagcaatgattaccttgaaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="37980" stop="32934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37680" g_stop="37574" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="220" r_length="112" r_score="0.870"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="328" r_length="108" r_score="0.914"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="0.85"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="385" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34548" g_stop="34352" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="583" r_length="198" r_score="0.959"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34351" i_stop="33270" i_length="1082">
            <donor d_prob="0.873" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33269" g_stop="33234" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="619" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E439493" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37680" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34352"/>
          <exon e_start="33269" e_stop="33234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAG-CTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGG-CTGTA-CAGGCCATGGTCCAACAGGCCATG-CAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACA-CTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATA-CGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAA-AAACTCATAGGCGAGGCTGCTGATTTGATG-CAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATG-CTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAGGTACATCTGATTATGTTATAAATGTGGCTAAGCAAGTTACCTTCTCTAGAATTGTTGAATGCAACACCCTTCTTACTATCAAGCATTCAGCAGATTCATGCAATCCGAGTATAATTTTAAAATAACGTAATTTATTTTCTTAAGATAACTTGGAATAGTTAATGTGTTCATACTTAAAGCTTGCAACTTCTGCACTTAGTTTTGGTGATTTGTGCAGTATCGGGACTGAAGATATTAGTATTTAAGGCACATAATTTGCTTATTTGCTCATTTTCTGGCAGTTTGTCTACATCTTACTTACATTTGAGTTTGGGTTAGACATGTTTTCTGAATAAAGATTCTGATTGTCTTCATTTTATATATGTTTTAGTTGTCTTTGAGGATTCTAGTTTCCTCCCCTTATCAACTGTGCCAAAGGATTAAAGTGAATGTTATCTGTGCTTTGTCAGAAATGTTTGTTTTTAGTAGAAACTTCATATTTTTTCCGGAAGAGATTATACACCTTGGATGTCATTGAATAAATAGAGACTGAAGTAAGTTCTGCAGAGCTCCATGTTTGAGATAGTTCCATATTTGCTCTGTTTGCTTTGGTTTATTTGTGGATGGACTTCCATTCTTTAAATTTCATTGGGAGCAGGTGACTAAACTTTAGAAGACAATTGTAGTTCTGCTATACTTTGCACTTCTTTTCAAGATGATAAGAAGTGATTGAAGTTGTATTCAGAATACATGACAATTAAATGACATGGTTATGCTCATCTACACCCTATAAATTCACCTAAGCTGATACTGACTTTTGAAGTAGTAAAGGTCTTTCAAAGTTGCATCACCTATCAAATGTAAATGAAAGTTATTTTATTTATCATAGAATAGTTTTTGCCATGTCTCCAAATTTTTTAGGTTGGAGTGACCTTGCATGATTTTCTTAATTGTTGATTTAGCAGGTCAGCAATCCTAAGGCATGAGATTCTTACTTATTTAGAGTGATATAGCTCTAGATGAATGAATGATTTCATTTGGAGATCGTTTTTTGCATTTGTGTATCTTAAACTGGTGTGTCATTCTTTCTACTTCTGTTGCAGGTATTACTCACATAGCAATGATTACCTTGAAATATG</genome_strand>
        <mrna_strand>GAAATGCAGCTACAGACATTCTTCAGCTTTGCTTTGAAGCCTCGCGCATGGAAAACTTTAAATGAACAAATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTACCAGGCCATGGTTCAACAAGCCATGCCAGTACATTGACCAGACCCCCGATATTGACATCAAGATAGAACTTATCAAAACACCTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACCGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAACCAACTCATAGGCCAGGCTGCTGATTTGATGCCAAGAAGTTGCG..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGCCTTAGATCATAAAGAATATGTTCGTGCTCAAATACTCTCAAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAGGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAGCCTGCTGCAGATATTCCGTCACTGCCCGAGTTGAAGCAGATCTACTATCAATTAATGATTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTACTCACATAGCAATGATTACCTTGAAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437107" ref_strand="+" ref_description="SGN-E437107 [cSTA-2-P9]">
      <seq>taaagaagaacaacaactcataggcgaggctgctgatttgatgcaagaagttgcggttgaaacctttggagcgatggcaaaaactgaaaagatagcctttattcttgaacaagttcgtctatgcttagatcataaagattatgttcgtgctcaaatactctcaagaaagatcaatcccagagtgtttgaagctgatccatctaaggaaaagaagaaagcaaaggagggtgaaaatgtggttgaggagcctgctgcagatattccgtcactgccagagttgaagcagatctactatcaattaatgattaggtattactcacatagcaatgattacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="35223" stop="32944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34923" g_stop="34869" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="112" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34548" g_stop="34352" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="309" r_length="197" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34351" i_stop="33270" i_length="1082">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33269" g_stop="33244" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="335" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E437107" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34923" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34352"/>
          <exon e_start="33269" e_stop="33244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAGGTACATCTGATTATGTTATAAATGTGGCTAAGCAAGTTACCTTCTCTAGAATTGTTGAATGCAACACCCTTCTTACTATCAAGCATTCAGCAGATTCATGCAATCCGAGTATAATTTTAAAATAACGTAATTTATTTTCTTAAGATAACTTGGAATAGTTAATGTGTTCATACTTAAAGCTTGCAACTTCTGCACTTAGTTTTGGTGATTTGTGCAGTATCGGGACTGAAGATATTAGTATTTAAGGCACATAATTTGCTTATTTGCTCATTTTCTGGCAGTTTGTCTACATCTTACTTACATTTGAGTTTGGGTTAGACATGTTTTCTGAATAAAGATTCTGATTGTCTTCATTTTATATATGTTTTAGTTGTCTTTGAGGATTCTAGTTTCCTCCCCTTATCAACTGTGCCAAAGGATTAAAGTGAATGTTATCTGTGCTTTGTCAGAAATGTTTGTTTTTAGTAGAAACTTCATATTTTTTCCGGAAGAGATTATACACCTTGGATGTCATTGAATAAATAGAGACTGAAGTAAGTTCTGCAGAGCTCCATGTTTGAGATAGTTCCATATTTGCTCTGTTTGCTTTGGTTTATTTGTGGATGGACTTCCATTCTTTAAATTTCATTGGGAGCAGGTGACTAAACTTTAGAAGACAATTGTAGTTCTGCTATACTTTGCACTTCTTTTCAAGATGATAAGAAGTGATTGAAGTTGTATTCAGAATACATGACAATTAAATGACATGGTTATGCTCATCTACACCCTATAAATTCACCTAAGCTGATACTGACTTTTGAAGTAGTAAAGGTCTTTCAAAGTTGCATCACCTATCAAATGTAAATGAAAGTTATTTTATTTATCATAGAATAGTTTTTGCCATGTCTCCAAATTTTTTAGGTTGGAGTGACCTTGCATGATTTTCTTAATTGTTGATTTAGCAGGTCAGCAATCCTAAGGCATGAGATTCTTACTTATTTAGAGTGATATAGCTCTAGATGAATGAATGATTTCATTTGGAGATCGTTTTTTGCATTTGTGTATCTTAAACTGGTGTGTCATTCTTTCTACTTCTGTTGCAGGTATTACTCACATAGCAATGATTACC</genome_strand>
        <mrna_strand>TAAAGAAGAACAACAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCG..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATACTCTCAAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAGGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAGCCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTACTCACATAGCAATGATTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278636" ref_strand="+" ref_description="SGN-E278636 [cLER-10-N24]">
      <seq>aacaggccatgcaatacattgaccagacgcccgatcttgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaaaaactcataggcgaggctgctgatttgatgcaagaagttgctgttgaaacctttggagcgatggcaaaaactgaaaagatagcctttattcttgaacaagttcgtctatgcttagatcataaagattatgttcgtgctcaaattctctcgagaaagatcaatcccagagtgtttgaagctgatccatctaaagaaaagaagaaagcaaaggagggtgaaaatgtggttgaggaacctgctgcagatattccgtcactgccagagttgaagcagatctactatcaattaatgattaggtattactcacatagcaatgattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="35445" stop="32945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35145" g_stop="35057" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="194" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="251" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34548" g_stop="34352" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="448" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34351" i_stop="33270" i_length="1082">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33269" g_stop="33245" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="473" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E278636" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35145" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34352"/>
          <exon e_start="33269" e_stop="33245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAGGTACATCTGATTATGTTATAAATGTGGCTAAGCAAGTTACCTTCTCTAGAATTGTTGAATGCAACACCCTTCTTACTATCAAGCATTCAGCAGATTCATGCAATCCGAGTATAATTTTAAAATAACGTAATTTATTTTCTTAAGATAACTTGGAATAGTTAATGTGTTCATACTTAAAGCTTGCAACTTCTGCACTTAGTTTTGGTGATTTGTGCAGTATCGGGACTGAAGATATTAGTATTTAAGGCACATAATTTGCTTATTTGCTCATTTTCTGGCAGTTTGTCTACATCTTACTTACATTTGAGTTTGGGTTAGACATGTTTTCTGAATAAAGATTCTGATTGTCTTCATTTTATATATGTTTTAGTTGTCTTTGAGGATTCTAGTTTCCTCCCCTTATCAACTGTGCCAAAGGATTAAAGTGAATGTTATCTGTGCTTTGTCAGAAATGTTTGTTTTTAGTAGAAACTTCATATTTTTTCCGGAAGAGATTATACACCTTGGATGTCATTGAATAAATAGAGACTGAAGTAAGTTCTGCAGAGCTCCATGTTTGAGATAGTTCCATATTTGCTCTGTTTGCTTTGGTTTATTTGTGGATGGACTTCCATTCTTTAAATTTCATTGGGAGCAGGTGACTAAACTTTAGAAGACAATTGTAGTTCTGCTATACTTTGCACTTCTTTTCAAGATGATAAGAAGTGATTGAAGTTGTATTCAGAATACATGACAATTAAATGACATGGTTATGCTCATCTACACCCTATAAATTCACCTAAGCTGATACTGACTTTTGAAGTAGTAAAGGTCTTTCAAAGTTGCATCACCTATCAAATGTAAATGAAAGTTATTTTATTTATCATAGAATAGTTTTTGCCATGTCTCCAAATTTTTTAGGTTGGAGTGACCTTGCATGATTTTCTTAATTGTTGATTTAGCAGGTCAGCAATCCTAAGGCATGAGATTCTTACTTATTTAGAGTGATATAGCTCTAGATGAATGAATGATTTCATTTGGAGATCGTTTTTTGCATTTGTGTATCTTAAACTGGTGTGTCATTCTTTCTACTTCTGTTGCAGGTATTACTCACATAGCAATGATTAC</genome_strand>
        <mrna_strand>AACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCT..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTACTCACATAGCAATGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453703" ref_strand="+" ref_description="SGN-E453703 [cSTS-20-J6]">
      <seq>gagaatcgatctcaatcgaacttcaaaaaaaacttaacaatcaatatggaaggtgactgggaaaattggaggcgcaaattgaggcgcttctgaatgtagagaagcagatgagaccaagctggcgacgtcgccagtacctagaaaagcagctacagacattcttcagctttgctttgaaagctcgcgccatggaaaactttaaatgaacagattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggttcaacaagccatgcagtacattgaccagacgcccgatcttgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatatgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaacaactcataggcgaggctgctgatttgatgcaagaagttgcggttgaaacctttggagcgatggcaaaaactgaaaagatagcctttattcttgaacaagttcgtctatgcttagatcataaagaattatgttcgtgctcaaatactctcaagaaagatcaatcccagagtgtttgaagctgatccatctaangaaaagaagaaagcaaggaaggtgaaaatgtggttgaagagcctgctgcagatattccgtcactgccagaagtgaagcagatctactatcaataatgattangtattactcacatagcaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38199" stop="32948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37899" g_stop="37852" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="249" r_length="201" r_score="0.897"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="357" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="462" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="519" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34548" g_stop="34352" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="715" r_length="196" r_score="0.934"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34351" i_stop="33270" i_length="1082">
            <donor d_prob="0.873" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33269" g_stop="33248" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="737" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E453703" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37899" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34352"/>
          <exon e_start="33269" e_stop="33248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGA-TGGG-AAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAG-GCAAGCTGGCGATGTCGCTGCTA-CTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCG-AAGCTCGCG-CATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAG-ATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAGGTACATCTGATTATGTTATAAATGTGGCTAAGCAAGTTACCTTCTCTAGAATTGTTGAATGCAACACCCTTCTTACTATCAAGCATTCAGCAGATTCATGCAATCCGAGTATAATTTTAAAATAACGTAATTTATTTTCTTAAGATAACTTGGAATAGTTAATGTGTTCATACTTAAAGCTTGCAACTTCTGCACTTAGTTTTGGTGATTTGTGCAGTATCGGGACTGAAGATATTAGTATTTAAGGCACATAATTTGCTTATTTGCTCATTTTCTGGCAGTTTGTCTACATCTTACTTACATTTGAGTTTGGGTTAGACATGTTTTCTGAATAAAGATTCTGATTGTCTTCATTTTATATATGTTTTAGTTGTCTTTGAGGATTCTAGTTTCCTCCCCTTATCAACTGTGCCAAAGGATTAAAGTGAATGTTATCTGTGCTTTGTCAGAAATGTTTGTTTTTAGTAGAAACTTCATATTTTTTCCGGAAGAGATTATACACCTTGGATGTCATTGAATAAATAGAGACTGAAGTAAGTTCTGCAGAGCTCCATGTTTGAGATAGTTCCATATTTGCTCTGTTTGCTTTGGTTTATTTGTGGATGGACTTCCATTCTTTAAATTTCATTGGGAGCAGGTGACTAAACTTTAGAAGACAATTGTAGTTCTGCTATACTTTGCACTTCTTTTCAAGATGATAAGAAGTGATTGAAGTTGTATTCAGAATACATGACAATTAAATGACATGGTTATGCTCATCTACACCCTATAAATTCACCTAAGCTGATACTGACTTTTGAAGTAGTAAAGGTCTTTCAAAGTTGCATCACCTATCAAATGTAAATGAAAGTTATTTTATTTATCATAGAATAGTTTTTGCCATGTCTCCAAATTTTTTAGGTTGGAGTGACCTTGCATGATTTTCTTAATTGTTGATTTAGCAGGTCAGCAATCCTAAGGCATGAGATTCTTACTTATTTAGAGTGATATAGCTCTAGATGAATGAATGATTTCATTTGGAGATCGTTTTTTGCATTTGTGTATCTTAAACTGGTGTGTCATTCTTTCTACTTCTGTTGCAGGTATTACTCACATAGCAATGAT</genome_strand>
        <mrna_strand>GAGAATCGATCTCAATCGAACTTCAAAAAAAACTTAACAATCAATATG...................................................................................GAAGGTGACTGGGAAAATTGGAGGCGCAAATTGAGGCGCTTCTGAATGTAGAGAAGCAGATGAGACCAAGCTGGCGACGTCGCCAGTACCTAGAAAAGCAGCTACAGACATTCTTCAGCTTTGCTTTGAAAGCTCGCGCCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTTCAACAAGCCATGCAGTACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATATGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAACAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCG..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGCTTAGATCATAAAGAATTATGTTCGTGCTCAAATACTCTCAAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAANGAAAAGAAGAAAGC-AAGGAAGGTGAAAATGTGGTTGAAGAGCCTGCTGCAGATATTCCGTCACTGCCAGAAGTGAAGCAGATCTACTATCAA-TAATGATTAN..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTACTCACATAGCAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418508" ref_strand="+" ref_description="SGN-E418508 [STM-27-P11]">
      <seq>gtttgtgagaatcgatctcaatcgaacttcaaaaaaaacttaacaatcaatatggaaggtgatgggaaattggaggcgcaaattgaggcgcttcttaatgtagagaagcagatgagacaagctggcgacgtcgccagtactagaaaagcagctacagacattcttcagctttgctttgaagctcgcgcatggaaaactttaaatgaacaaattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggttcaacaagccatgcagtacattgaccagacgcccgatattgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaacaactcataggcgaggctgctgatttgatgcaagaagttgcgggtgaaacctttggagcgatggcaaaaactgaaaagatagcctttattcttgaacaagttcgtctatgcttagatcataaagattatggttcgtgctcaaatactctcaagaaagatcaatcccagagtgtttgaagctgatccatctaaggaaaagaagaaagcaaggagggtgaaaatgtggttgaggagcctgctgcagatattccgtcactgccagagttgaagcagatctactatcaattaatgattangtattactcacattagcatgattaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38205" stop="34049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37905" g_stop="37852" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="249" r_length="195" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="357" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="462" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="519" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34548" g_stop="34352" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="716" r_length="197" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E418508" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37905" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTAT-GTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAG</genome_strand>
        <mrna_strand>GTTTGTGAGAATCGATCTCAATCGAACTTCAAAAAAAACTTAACAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGCGCTTCTTAATGTAGAGAAGCAGATGAGACAAGCTGGCGACGTCGCCAGTACTAGAAAAGCAGCTACAGACATTCTTCAGCTTTGCTTTGAAGCTCGCGCATGGAAAACTTTAAATGAACAAATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTTCAACAAGCCATGCAGTACATTGACCAGACGCCCGATATTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAACAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCG..............................................................................................................................................GGTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGCTTAGATCATAAAGATTATGGTTCGTGCTCAAATACTCTCAAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAGGAAAAGAAGAAAGC-AAGGAGGGTGAAAATGTGGTTGAGGAGCCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478745" ref_strand="+" ref_description="SGN-E478745 [cSTD-6-H24]">
      <seq>tgagaatcgatctcaatcgaacttcaaaaaaaacttaacaatcaatatggaaggtgatgggaaattggaggcgcaaattgaggcgcttctgaatgtagagaagcagatgagacaagctggcgacgtcgccagtactagaaaagcagctacagacattcttcagctttgctttgaagctcgcgcatggaaaactttaaatgaacagattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggttcaacaagccatgcagtacattgaccagacgcccgatcttgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatatgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaacaactcataggcgaggctgctgatttgatgcaagaagttgcggttgaaacctttggagcgatggcaaaaactgaaaagatagcctttattcttgaacaagttcgtctatgcttagatcataaagattatgttcgtgctcaaatactctcaagaaagatcaatcccagagtgtttgaagctgatccatctaaggaaaagaagaaagcaagggaggtgaaaatgtggttgaggagcctgctgcagatattccgtcactgccagagttgaagcagatctactatcaattaatgattangtattactcacatagncatgattaccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38200" stop="34049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37900" g_stop="37852" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="244" r_length="195" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="352" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="457" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="514" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34548" g_stop="34352" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="710" r_length="196" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E478745" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37900" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAG</genome_strand>
        <mrna_strand>TGAGAATCGATCTCAATCGAACTTCAAAAAAAACTTAACAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGCGCTTCTGAATGTAGAGAAGCAGATGAGACAAGCTGGCGACGTCGCCAGTACTAGAAAAGCAGCTACAGACATTCTTCAGCTTTGCTTTGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTTCAACAAGCCATGCAGTACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATATGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAACAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCG..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATACTCTCAAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAGGAAAAGAAGAAAGCAAGGGA-GGTGAAAATGTGGTTGAGGAGCCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559360" ref_strand="+" ref_description="SGN-E559360 [18846]">
      <seq>gtttgtgagaatcgatctcaatcgaacttcaaaaaaaacttaacaatcaatatggaaggtgatgggaaattggaggcgcaaattgaggcgcttcttaatgtagagaagcagatgagacaagctggcgacgtcgccagtactagaaaagcagctacagacattcttcagctttgctttgaagctcgcgcatggaaaactttaaatgaacaaattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggttcaacaagccatgcagtacattgaccagacgcccgatattgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaacaactcataggcgaggctgctgatttgatgcaagaagttgcggttgaaacctttggagcgatggcaaaaactgaaaagatagcctttattcttgaacaagttcgtctatgcttagatcataaagattatgttcgtgctcaaatactctcaagaaagatcaatcccagagtgtttgaagctgatccatctaaggaaaagaagaaagcaaaggagggtgaaaatgtggttgaggagcctgctgcagatattccgtcactgccaggagttgaagcagatctactatcaattatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38205" stop="34053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37905" g_stop="37852" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="249" r_length="195" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="357" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="462" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="519" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34548" g_stop="34353" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="715" r_length="196" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E559360" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37905" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCA-GAGTTGAAGCAGATCTACTATCAATTAATGATTA</genome_strand>
        <mrna_strand>GTTTGTGAGAATCGATCTCAATCGAACTTCAAAAAAAACTTAACAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGCGCTTCTTAATGTAGAGAAGCAGATGAGACAAGCTGGCGACGTCGCCAGTACTAGAAAAGCAGCTACAGACATTCTTCAGCTTTGCTTTGAAGCTCGCGCATGGAAAACTTTAAATGAACAAATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTTCAACAAGCCATGCAGTACATTGACCAGACGCCCGATATTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAACAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCG..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATACTCTCAAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAGGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAGCCTGCTGCAGATATTCCGTCACTGCCAGGAGTTGAAGCAGATCTACTATCAATT-ATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341368" ref_strand="+" ref_description="SGN-E341368 [cTOE-23-O13]">
      <seq>atcgatctcaatcgaactccgaaaaaaactcaataatcaatatggaaggtgatgggaaattggaggcgcaaattgaggtgcttctgaatgtagagaagcagatgaggcaagctggcgatgtcgctgctactagaaaagcagctatagacattcttcagctttgcttcgaagctcgcgcatggaaaactttaaatgaacagattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggtccaacaggccatgcaatacattgaccagacgcccgatcttgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaaaaactcataggcgaggctgctgatttgatgcaagaagttgctgttgaaacctttggagcgatggcaaaaactgaaaagatagcctttattcttgaacaagttcgtctatgcttagatcataaagattatgttcgtgctcaaattctctcgagaaagatcaatcccagagtgtttgaagctgatccatctaaagaaaagaagaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38195" stop="34142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37895" g_stop="37852" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="239" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="347" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="452" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="509" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34548" g_stop="34442" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="616" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E341368" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37895" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGC</genome_strand>
        <mrna_strand>ATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCT..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579963" ref_strand="+" ref_description="SGN-E579963 [87097]">
      <seq>cctcgtgccgaattcggcacgagggggtttgtgagaatcgatctcaatcgaacttcaaaaaaaacttaacaatcaatatggaaggtgatgggaaattggaggcgcaaattgaggcgcttcttaatgtagagaagcagatgagacaagctggcgacgtcgccagtactagaaaagcagctacagacattcttcagctttgctttgaagctcgcgcatggaaaactttaaatgaacaaattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggttcaacaagccatgcagtacattgaccagacgcccgatattgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaacaactcataggcgaggctgctgatttgatgcaagaagttgcggttgaaacctttggagcgatggcaaaaactgaaaaagatagcctttattcttgaacaagttcgtctatgcttagatcataaagattatgtgcgtgctcaaatactctcaaagaaagatcaatcccagagtgtttgaagctgatccatctaaggaaaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38207" stop="34147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37906" g_stop="37852" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="80" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="275" r_length="195" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="383" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="488" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="546" r_length="58" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.904" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34548" g_stop="34447" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="649" r_length="103" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E579963" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37906" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTG-AAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTC-GAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAG</genome_strand>
        <mrna_strand>GGTTTGTGAGAATCGATCTCAATCGAACTTCAAAAAAAACTTAACAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGCGCTTCTTAATGTAGAGAAGCAGATGAGACAAGCTGGCGACGTCGCCAGTACTAGAAAAGCAGCTACAGACATTCTTCAGCTTTGCTTTGAAGCTCGCGCATGGAAAACTTTAAATGAACAAATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTTCAACAAGCCATGCAGTACATTGACCAGACGCCCGATATTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAACAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCG..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGCTTAGATCATAAAGATTATGTGCGTGCTCAAATACTCTCAAAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAGGAAAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416647" ref_strand="+" ref_description="SGN-E416647 [STM-23-I22]">
      <seq>ttggaggcgcaaattgaggcgcttcttaatgtagagaagcagatgagacaagctggcgacgtcgccagtactagaaaagcagctacagacattcttcagctttgctttgaagctcgcgcatggaaaactttaaatgaacaaattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggttcaacaagccatgcagtacattgaccagacgcccgatattgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaacaactcataggcgaggctgctgatttgatgcaagaagttgcggttgaaacctttggagcgatggcaaaaactgaaaagatagcctttattcttgaacaagttcgtctatgcttagatcataaagattatgttcgtgctcaaatactctcaagaaagatcaatcccagagtgtttgaagctgatccatctaaggaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38053" stop="34150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37753" g_stop="37574" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="288" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="393" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="450" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34548" g_stop="34450" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="549" r_length="99" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E416647" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37753" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAG</genome_strand>
        <mrna_strand>TTGGAGGCGCAAATTGAGGCGCTTCTTAATGTAGAGAAGCAGATGAGACAAGCTGGCGACGTCGCCAGTACTAGAAAAGCAGCTACAGACATTCTTCAGCTTTGCTTTGAAGCTCGCGCATGGAAAACTTTAAATGAACAAATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTTCAACAAGCCATGCAGTACATTGACCAGACGCCCGATATTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAACAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCG..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATACTCTCAAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAGGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307426" ref_strand="+" ref_description="SGN-E307426 [cLEY-12-O18]">
      <seq>tgagaatcgatctcaatcgaactccgaaaaaaactcaataatcaatatggaaggtgatgggaaattggaggcgcaaattgaggtgcttctgaatgtagagaagcagatgaggcaagctggcgatgtcgctgctactagaaaagcagctatagacattcttcagctttgcttcgaagctcgcgcatggaaaactttaaatgaacagattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggtccaacaggccatgcaatacattgaccagacgcccgatcttgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaaaaactcataggcgaggctgctgatttgatgcaagaagttgctgttgaaacctttggagcgatggcaaaaactgaaaagatagcctttattcttgaacaagttcgtctatgcttagatcataaagattatgttcgtgctcaaattctctcgagaaagatcaatcccagagtgtttgaagctgatccatctaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38200" stop="34151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37900" g_stop="37852" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="244" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="352" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="457" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="514" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34548" g_stop="34451" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="612" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E307426" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37900" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAA</genome_strand>
        <mrna_strand>TGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCT..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569647" ref_strand="+" ref_description="SGN-E569647 [14113]">
      <seq>tgagaatcgatctcaatcgaacttcaaaaaaaacttaacaatcaatatggaaggtgatgggaaattggaggcgcaaattgaggcgcttctgaatgtagagaagcagatgaggcaagctggcgacgtcgccagtactagaaaagcagctacagacattcttcagctttgctttgaagctcgcgcatgggaaaactttaaatgaacaaattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatgggttcaacaagccatgcagtacattgaccagacgcccggatatcgacaccgaagatagaacttatcaaaacactgaacagtgtgtctgctgggaaagatatacgttgagattgagagagctcgcttgattaagaagctcgcaaaggattaccagaagaacaacaactcatagggcgagctggctgatttcgatgccaagaagttgcggttgaaacctttggagcgatggccaaaactgaacaagatagcctttattcttggaacaagttcgtctatgcttagatcacaaagattatgttcgtgctcaaatactctcaagaaagatcaatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38200" stop="34183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37900" g_stop="37852" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="245" r_length="196" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="357" r_length="112" r_score="0.880"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="467" r_length="110" r_score="0.848"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="0.77"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="526" r_length="59" r_score="0.912"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.904" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34548" g_stop="34483" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="592" r_length="66" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E569647" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37900" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCAT-GGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCAT-GGTCCAACAGGCCATGCAATACATTGACCAGACGCCC-GATCTTGACACC-AAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCT-GGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAA-GATTA-AAGAAGAACAAAAACTCATA-GGCGAGGCTGCTGATTT-GATG-CAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAA-AAGATAGCCTTTATTCTT-GAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCC</genome_strand>
        <mrna_strand>TGAGAATCGATCTCAATCGAACTTCAAAAAAAACTTAACAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGCGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGACGTCGCCAGTACTAGAAAAGCAGCTACAGACATTCTTCAGCTTTGCTTTGAAGCTCGCGCATGGGAAAACTTTAAATGAACAAATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGGTTCAACAAGCCATGCAGTACATTGACCAGACGCCCGGATATCGACACCGAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGGATTACCAGAAGAACAACAACTCATAGGGCGAGCTGGCTGATTTCGATGCCAAGAAGTTGCG..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCCAAAACTGAACAAGATAGCCTTTATTCTTGGAACAA.........................................................................................................................GTTCGTCTATGCTTAGATCACAAAGATTATGTTCGTGCTCAAATACTCTCAAGAAAGATCAATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442145" ref_strand="+" ref_description="SGN-E442145 [cSTA-32-I7]">
      <seq>gtttgtgagaatcgatctcaatcgaacttcaaaaaaaacttaacaatcaatatggaaggtgatgggaaattggaggcgcaaattgaggcgcttcttaatgtagagaagcagatgagacaagctggcgacgtcgccagtactagaaaagcagctacagacattcttcagctttgctttgaagctcgcgcatggaaaactttaaatgaacaaattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggttcaacaagccatgcagtacattgaccagacgcccgatattgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaacaactcataggcgaggctgctgatttgatgcaagaagttgcggttgaaacctttggagcgatggcaaaaactgaaaagatagcctttattcttgaacaagttcgtctatgcttagatcataaagattatgttcgtgctcaaatactctcaagaaagatcaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38205" stop="34184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37905" g_stop="37852" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="249" r_length="195" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="357" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="462" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="519" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34548" g_stop="34484" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="584" r_length="65" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E442145" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37905" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCC</genome_strand>
        <mrna_strand>GTTTGTGAGAATCGATCTCAATCGAACTTCAAAAAAAACTTAACAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGCGCTTCTTAATGTAGAGAAGCAGATGAGACAAGCTGGCGACGTCGCCAGTACTAGAAAAGCAGCTACAGACATTCTTCAGCTTTGCTTTGAAGCTCGCGCATGGAAAACTTTAAATGAACAAATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTTCAACAAGCCATGCAGTACATTGACCAGACGCCCGATATTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAACAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCG..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATACTCTCAAGAAAGATCAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358977" ref_strand="+" ref_description="SGN-E358977 [cLHT-24-D10]">
      <seq>tctcaatcgaactccgaaaaaaactcaatatcaatatggaaggtgatgggaaattggaggcgcaaattgaggtgcttctgaatgtagagaagcagatgaggcaagctggcgatgtcgctgctactagaaaagcagctatagacattcttcagctttgctttgaagctcgcgcatggaaaactttaaatgaacagattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggttcaacaggccatgcagtacattgaccagacgcccgatcttgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgattaagaagcttgcaaagattaaagaagaacaaaaactcataggcgaggctgctgatttgatgcaagaagttgctgttgaaacctttggagcgatggcaaaaactgaaaagatagcctttattcttgaacaagttcgtctatgtttagatcataaagattatgttcgtgctcaaattctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38190" stop="34199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37890" g_stop="37852" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="233" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="341" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="446" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="503" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34548" g_stop="34499" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="553" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E358977" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37890" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTC</genome_strand>
        <mrna_strand>TCTCAATCGAACTCCGAAAAAAACTCAAT-ATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTTGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTTCAACAGGCCATGCAGTACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTTGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCT..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGTTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214408" ref_strand="+" ref_description="SGN-E214408 [cLEC-77-K24]">
      <seq>tctcttttagggtttctgagaatcgatctcaatcgaactccgaaaaaaactcaataatcaatatggaaggtgatgggaaattggaggcgcaaattgaggtgcttctgaatgtatagaagcagatgaggcaagctggcgatgtcgctgctactacaaaagcagctatagacattcttcagctttgcttccaagctcgcgcatggaaaactttaaatgaacagattgttctattgtctaagcgccgtggacaattgaaacacgctgtacaggccatggtccaacaggccatgcaatacattgaccagacgcccgatcttgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgattaagaagctcgcaaagattatagaagaacaaaaactcataggcgaggctgctgatttgatgcaagaagttgctgttgacacctttggagcgatggcaaaaactgaaaagatagcctttattcttgaacaagttcgtctatgcttagatcataaagattatgttcgtgctcaaattctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38216" stop="34200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37916" g_stop="37852" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="260" r_length="195" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="368" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="473" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="530" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34548" g_stop="34500" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="579" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E214408" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37916" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTTAGGGTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCT</genome_strand>
        <mrna_strand>TCTCTTTTAGGGTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTATAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTACAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCCAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTATAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCT..............................................................................................................................................GTTGACACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484146" ref_strand="+" ref_description="SGN-E484146 [cSTE-12-C2]">
      <seq>tgagaatcgatctcaatcgaacttcaaaaaaaacttaacaatcaatatggaaggtgatgggaaattggaggcgcaaattgaggcgcttctgaatgtagagaagcagatgaggcaagctggcgacgtcgccagtactagaaaagcagctacagacattcttcagctttgctttgaagctcgcgcatggaaaactttaaatgaacagattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggttcaacaagccatgcagtacattgaccagacgcccgatcttgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatatgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaacaactcataggcgaggctgctgatttgatgcaagaagttgcggttgaaacctttggagcgatggcaaaaactgaaaagatagcctttattcttgaacaagttcgtctatgcttagatcataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38200" stop="34226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37900" g_stop="37852" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="244" r_length="195" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="352" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="457" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34670" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="514" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34548" g_stop="34526" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="537" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E484146" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37900" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34670"/>
          <exon e_start="34548" e_stop="34526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAAGTATGTGATTCTCTTCCTTCTCTTTTATCCTTTTTGATGGGCAAACTCTTCCTTCTCTTTATACCCAAAATTTTAACGAGACCGTGCTTTTGGACCAACTGTGTGGTGCTGAACATTGCAGGTTCGTCTATGCTTAGATCATAA</genome_strand>
        <mrna_strand>TGAGAATCGATCTCAATCGAACTTCAAAAAAAACTTAACAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGCGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGACGTCGCCAGTACTAGAAAAGCAGCTACAGACATTCTTCAGCTTTGCTTTGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTTCAACAAGCCATGCAGTACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATATGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAACAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCG..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA.........................................................................................................................GTTCGTCTATGCTTAGATCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298160" ref_strand="+" ref_description="SGN-E298160 [cLEW-9-I20]">
      <seq>agaatcgatctcaatcgaactccgaaaaaaactcaataatcaatatggaaggtgatgggaaattggaggcgcaaattgaggtgcttctgaatgtagagaagcagatgaggcaagctggcgatgtcgctgctactagaaaagcagctatagacattcttcagctttgcttcgaagctcgcgcatggaaaactttaaatgaacagattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggtccaacaggccatgcaatacattgaccagacgcccgatcttgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgattaataagctcgcaaagattaaagaagaacaaaaactcatatgcgaggctgctgatttgatgcaagaagttgctgttgaaacctttggagcgatggctaaaactgaaaagatagcctttattcttgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38198" stop="34372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37898" g_stop="37852" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="242" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="350" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="455" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34672" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="510" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E298160" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37898" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAAC</genome_strand>
        <mrna_strand>AGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAATAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATATGCGAGGCTGCTGATTTGATGCAAGAAGTTGCT..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCTAAAACTGAAAAGATAGCCTTTATTCTTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443223" ref_strand="+" ref_description="SGN-E443223 [cSTA-36-F4]">
      <seq>tgagaatcgatctcaatcgaacttcaaaaaaaacttaacaatcaatatggaaggtgatgggaaattggaggcgcaaattgaggcgcttctgaatgtagagaagcagatgagacaagctggcgacgtcgccagtactagaaaagcagctacagacattcttcagctttgctttgaagctcgcgcatggaaaactttaaatgaacagattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggttcaacaagccatgcagtacattgaccagacgcccgatcttgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatatgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaacaactcataggcgaggctgctgatttgatgcaagaagttgcggttgaaacctttggagcgatggcaaaaactgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38200" stop="34393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37900" g_stop="37852" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="244" r_length="195" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="352" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="457" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34693" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="491" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E443223" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37900" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAA</genome_strand>
        <mrna_strand>TGAGAATCGATCTCAATCGAACTTCAAAAAAAACTTAACAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGCGCTTCTGAATGTAGAGAAGCAGATGAGACAAGCTGGCGACGTCGCCAGTACTAGAAAAGCAGCTACAGACATTCTTCAGCTTTGCTTTGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTTCAACAAGCCATGCAGTACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATATGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAACAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCG..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207710" ref_strand="+" ref_description="SGN-E207710 [cLEC-32-E11]">
      <seq>gaatcgatctcaatcgaactccgaaaaaaactcaataatcaatatggaaggtgatgggaaattggaggcgcaaattgaggtgcttctgaatgtagagaagcagatgaggcaagctggcgatgtcgctgctactagaaaagcagctatagacattcttcagctttgcttcgaagctcgcgcatggaaaactttaaatgaacagattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggtccaacaggccatgcaatacattgaccagacgcccgatcttgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaaaaactcataggcgaggctgctgatttgatgcaagaagttgctgttgaaacctttggagcgatggcaaaaactgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38197" stop="34393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37897" g_stop="37852" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="241" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="349" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="454" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34693" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="488" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E207710" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37897" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAA</genome_strand>
        <mrna_strand>GAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCT..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416632" ref_strand="+" ref_description="SGN-E416632 [STM-23-G22]">
      <seq>tctcaatcgaacttcaaaaaaaacttaacaatcaatatggaaggtgatgggaaattggaggcgcaaattgaggcgcttcttaatgtagagaagcagatgagacaagctggcgacgtcgccagtactagaaaagcagctacagacattcttcagctttgctttgaagctcgcgcatggaaaactttaaatgaacaaattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggttcaacaagccatgcagtacattgaccaaacgcccgatattgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagagcaacaactcatatgcgaagctgctgatttgatgcaagaagttgcggttgaaacctttggagcgatggcaaaaactgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38072" stop="34393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37890" g_stop="37852" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="234" r_length="195" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="342" r_length="108" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="447" r_length="105" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34693" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="481" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E416632" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37890" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGATGGCAAAAACTGAAA</genome_strand>
        <mrna_strand>TCTCAATCGAACTTCAAAAAAAACTTAACAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGCGCTTCTTAATGTAGAGAAGCAGATGAGACAAGCTGGCGACGTCGCCAGTACTAGAAAAGCAGCTACAGACATTCTTCAGCTTTGCTTTGAAGCTCGCGCATGGAAAACTTTAAATGAACAAATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTTCAACAAGCCATGCAGTACATTGACCAAACGCCCGATATTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAGCAACAACTCATATGCGAAGCTGCTGATTTGATGCAAGAAGTTGCG..............................................................................................................................................GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419509" ref_strand="+" ref_description="SGN-E419509 [STM-29-B8]">
      <seq>ctctctctctcttctagggtttgtgagaatcgatctcaatcgaacttcaaaaaaaacttaacaatcaatatggaaggtgatgggaaattggaggcgcaaattgaggcgcttctgaatgtagagaagcagatgaggcaagctggcgacgtcgccagtactagaaaagcagctacagacattcttcagctttgctttgaagctcgcgcatggaaaactttaaatgaacagattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggttcaacaagccatgcagtacattgaccagacgcccgatcttgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatatgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaacaactcataggcgaggctgctgatttgatgcaagaagttgcggttgaaacctttggagcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38223" stop="34407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37923" g_stop="37852" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="267" r_length="195" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="375" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34869" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="480" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34726" g_stop="34707" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="500" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E419509" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37923" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34869"/>
          <exon e_start="34726" e_stop="34707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTCTTTTAGGGTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCTGTAAGTGTTTGTTGACCTTCACTTTGGTGTCTTCTTGGTCTTTTTTGCTTTGTGCAATTGATGTCTAACTGCAATATTCTGGTCCTTACTCTTTATGTTTTTTCCCACTTGCAATGTAATGTGTCCATGGCTTAACTAACAGGTTGAAACCTTTGGAGCGAT</genome_strand>
        <mrna_strand>CTCTCTCTCTCTTCTAGGGTTTGTGAGAATCGATCTCAATCGAACTTCAAAAAAAACTTAACAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGCGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGACGTCGCCAGTACTAGAAAAGCAGCTACAGACATTCTTCAGCTTTGCTTTGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTTCAACAAGCCATGCAGTACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATATGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAACAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCG..............................................................................................................................................GTTGAAACCTTTGGAGCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444268" ref_strand="+" ref_description="SGN-E444268 [cSTA-42-E14]">
      <seq>ctctctctctcttctagggtttgtgagaatcgatctcaatcgaacttcaaaaaaaacttaacaatcaatatggaaggtgatgggaaattggaggcgcaaattgaggcgcttctgaatgtagagaagcagatgaggcaagctggcgacgtcgccagtactagaaaagcagctacagacattcttcagctttgctttgaagctcgcgcatggaaaactttaaatgaacagattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggttcaacaagccatgcagtacattgaccagacgcccgatcttgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatatgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaagaagaacaacaactcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38223" stop="34603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37923" g_stop="37852" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="267" r_length="195" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="375" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34903" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="446" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E444268" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37923" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTCTTTTAGGGTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCAT</genome_strand>
        <mrna_strand>CTCTCTCTCTCTTCTAGGGTTTGTGAGAATCGATCTCAATCGAACTTCAAAAAAAACTTAACAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGCGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGACGTCGCCAGTACTAGAAAAGCAGCTACAGACATTCTTCAGCTTTGCTTTGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTTCAACAAGCCATGCAGTACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATATGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAACAACTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237392" ref_strand="+" ref_description="SGN-E237392 [cLEL-7-I17](-)">
      <seq>gcaccaggagaatcgatctcaatcgaactccgaaaaaaactcaataatcaatatggaaggtgatgggaaattggaggcgcaaattgaggtgcttctgaatgtagagaagcagatgaggcaagctggcgatgtcgctgctactagaaaagcagctatagacattcttcagctttgcttcgaagctcgcgcatggaaaactttaaatgaacagattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggtccaacaggccatgcaatacattgaccagacgcccgatcttgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgattaagaagctcgcaaagattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38199" stop="34608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37906" g_stop="37852" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="250" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="358" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34906" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="426" r_length="68" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E237392" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37906" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACT</genome_strand>
        <mrna_strand>GCACCAGGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721585" ref_strand="+" ref_description="SGN-E721585 [FC14BF07]">
      <seq>aactccgaaaaaaactcaataatcaatatggaaggtgatgggaaattggaggcgcaaattgaggtgcttctgaatgtaaagaaccagatgaggcaagctggcgatgtcgctgctactagaaaagcagctatagacattcttcagctttgcttcgaagctcgcgcatggaaaactttaaatgaacagattgttctattgtctaaccgccgtgaacaattgaaacaggctgtacaggccatggtccaacaggccatgcaatacattgaccagacgcccgatcttgacaccaagatagaacttatcaaaacactgaacagtgtgtctgctggaaagatatacgttgagattgagagagctcgcttgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38181" stop="34640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37881" g_stop="37852" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="225" r_length="195" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35057" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="333" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34973" g_stop="34940" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="367" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E721585" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37881" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35057"/>
          <exon e_start="34973" e_stop="34940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAGGTGAGGACATGTTCATTTTAATGAAAAGACATCACTGCAATTTGATTCTCTTTCCTACTGAGCAACTATGATCTGGAATGCAGATATACGTTGAGATTGAGAGAGCTCGCTTGATTA</genome_strand>
        <mrna_strand>AACTCCGAAAAAAACTCAATAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAAAGAACCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAACCGCCGTGAACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG...................................................................................ATATACGTTGAGATTGAGAGAGCTCGCTTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485881" ref_strand="+" ref_description="SGN-E485881 [cSTE-19-P2]">
      <seq>atcgatctcaatcgaacttcaaaaaaaacttaacaatcaatatggaaggtgatgggaaattggaggcgcaaattgaggcgcttctgaatgtagagaagcagatgaggcaagctggcgacgtcgccagtactagaaaagcagctacagacattcttcagctttgctttgaagctcgcgcatggaaaactttaaatgaacagattgttctattgtctaagcgccgtggacaattgaaacaggctgtacaggccatggttcaacaagccatgcagtacattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38195" stop="34824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37895" g_stop="37852" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="0.91"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37574" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="239" r_length="195" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35164" g_stop="35124" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="280" r_length="41" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E485881" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37895" e_stop="37852"/>
          <exon e_start="37768" e_stop="37574"/>
          <exon e_start="35164" e_stop="35124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAGGCACGTTTGTCTATTTTATTTATTTATTAGTTGATTTTTACGACTTCAAAATTTGGGTTTTGGTTCGTTTATAAATCTGGTCTTGAAAATCATGTTTTTGTTTGCTAAATTATGTGAAGGAAAAAGTAGGAAGTTTTAGAGATCAGTAAATTATTGCGTGGAAAAAGTAGGAAGTTTTAGAGATCAGTATATTATTGCGTGCTGTGTGCCGTTAAGCTGTTGGTAGTACCTAAAGATCTTGTTTTTTCACGTAATTGAAGTTTTGATTTGACCTATTGAGTTTCATATAGTTATACTTTACTGAGTGAATAAGCTAATTTGATCTTGACCATCACATTAGCAAAATTGATTTGATGAAGAACCCACCTGTGATATGCTGATAGAAGGCATGTTTTGAACTTAGAGGGCAATGTACTGGACTTACTTTCAGACTGTTCTTTTTATTTTTTTCACTCTTGTAGTGTTGCTGTAAATTCAATGGAAAGAGCAGGTAGACGTGCTGATTCCTTAGTGTGTAATTCAAAACTTCATCAGTTTTAGCTTAGCAGACTTGTAACTTGAGGAAGTAGGTGAGGGTGTTGGGTTAATGTTTTTCTCTAGGTCTAGGTGAGTGGATAGGCTCATCTCTATTCTTTGCTTGGTACAAAAGGAATGGAAGAGAGATTCTTTACTTTGTTTGGACTTCGGAAAAGCAAAAACACAGAGTAGTGCTTAGTATTTTAGGTTACTTGATTAAAAAGATATGTGAGACTACCTGTGAATGCTTCCATGATTAAAGCAGGAGTTTGGATAGGCTGTGGTCTTCATAGAAAAAATGGAAAGTTATCCTGTTTGTTTTTTACTTTTTTAAGTGATACGGGAAAACTAACTCTCGTCCCATACACTTAAACACTGCTAAAAGAAGGGTACTACTTGGTAGGGGTGTTGGATGAATTTTGCCTCTCTTAAGTTAAAAAAAAAGGTTGAGGAACTTGTGAGTCTTACACTATGAGGACCAAGCTTTGTATTTAGGTGGGGATCGATAGAAGCAGGGTGGGGCCATTTCCCCCATGTTTTGAAGGGTCTCAATAATTAAAAAAGAAGAAGTAAAGACTGAAGAGAGTCTTCCATTATTGTGTTCCAGCATAAGAAATGCTGGTAAGGGAAATACATACAGGATGGTTAATACTTAATATGCAAGTTCAAATCCTCATTTGGATTTCACTGGATATGTCGTTGTTTACAATTGCCATGTTGTGCCAAGATTTTGCCTGTTTAATTGATGAACTACTTTAGAGACTGCTTCGTTTGCAATGCCGTTTTTCAGATTTTTGATGAAGATGTTTATTAGGATTATTATTTCAGGGCGATATTGGTGTCTCGACCTCTAGATCTAATATTCGTATTTATGCTTGTTGAATGAAAATAAATGGTTGAAACCGGATTAGTAGGACATGAATAAAATTAAAGATAGGTACACACACATTTGAGCTTTTACCCTGTCAAAAAAGAAGATGAAGACACATTCCAGCTCTGTTGGGAATGAATTTGGAAAGGATGAATGTAGTGGCAAGTTCTTGGTTAATGATGTTAGTCAAGAGGTCCTAAAGAAATGCTAGGAATCAAATCCAAACAAATAGAGGTAAGGAGGGGTGAGGTACAAGGAAAAATGTCAACTACGACCAAAATACAAAAACAGAAAACCTATGTTGGCAACCAAGTTGTGGGTTAGCAGCTTTATATTTGTGGAAATTTTAAGCCAGGTTTCCTATGGCTGCAAAAATTTATCTGGGAGAATGTTGGATTTGGGGTATAAGTGAATAAGTAATCACGGGTCTTGGATGTGTTTTCCTAGGGACAGGTATTTCTATTCTACCAAGCACTACTTCTGCTTTGAACTTATAGGAACAAAAAATAGAAATTACTTGGAGATGCAATGCCCAAGGATGCAAGGAAGTATTTGAACCATGGAATTGCATAGCATGATGAAGCTAGGGAACTGAAAAATGATCAAGAAGTTGGATCGCATTTGCTTCATACTTAATTAGAATTTTTTTGCCTTTACTTGCTTTCACTTACCATCTACCTGGGAACATGCATGTTGTGGCTTCATATGTGAAATGCTTGGGCAATTGGCTACCAATGTGCTTGTGTTTTGAGAATATCGGGTAAGCATACTAGAGTATTTGTAAGCTCCCGAGTCCTGTCCCCCGAGTCCTGTCCATTCCATATTGAAATGCCTTTTTAGTTATGCTCTTCCTTGTCCCCATATATATGCATACGGCATGAGCCATTCTCATGAAAAATATACCTGTGGCATTTCAGCACTTTCTCTAGTTGCGATGACACTGATGCATGATACTATGGCTTCATTTATCCTCTTTAAACTTTATAATAATATGCTTGGTGTTTTTCCTGGTACTTATGCAGGCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGA</genome_strand>
        <mrna_strand>ATCGATCTCAATCGAACTTCAAAAAAAACTTAACAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGCGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGACGTCGCCAGTACTAGAAAAGCAGCTACAGACATTCTTCAGCTTTGCTTTGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACAGGCCATGGTTCAACAAGCCATGCAGTACATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457545" ref_strand="+" ref_description="SGN-E457545 [cPRO-3-C11]">
      <seq>ctctactctactctctctctctcttctagggtttgtgagaatcgatctcaatcgaacttcaaaaaaaacttaacaatcaatatggaaggtgatgggaaattggaggcgcaaattgaggcgcttctgaatgtagagaagcagatgaggcaagctggcgacgtcgccagtactagaaaagcagctacagacattcttcagctttgctttgaagctcgcgcatggaaaactttaaatgaacaaattggtctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38226" stop="37302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37926" g_stop="37852" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="84" r_length="75" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37602" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="251" r_length="167" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E457545" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37926" e_stop="37852"/>
          <exon e_start="37768" e_stop="37602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCTCTCTCTCTTTTAGGGTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATT</genome_strand>
        <mrna_strand>ACTCTCTCTCTCTCTTCTAGGGTTTGTGAGAATCGATCTCAATCGAACTTCAAAAAAAACTTAACAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGCGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGACGTCGCCAGTACTAGAAAAGCAGCTACAGACATTCTTCAGCTTTGCTTTGAAGCTCGCGCATGGAAAACTTTAAATGAACAAATTGGTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588079" ref_strand="+" ref_description="SGN-E588079 [41624]">
      <seq>tctctctcttctaggtttgtgagaatcgatctcaatcgaacttcaaaaaaaacttaacaatcaatatggaaggtgatgggaaattggaggcgcaaattgaggcgcttctgaatgtagagaagcagatgaggcaagctggcgacgtcgccagtactagaaaaagcagctacagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="38220" stop="37389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37920" g_stop="37852" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37768" g_stop="37663" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="175" r_length="107" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E588079" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37920" e_stop="37852"/>
          <exon e_start="37768" e_stop="37663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTTTTAGGGTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATGGTAAACTTCGATTTTCCTTCGATTTGTATAATTCGTGCTCGATTTTTGATCTTTATTCAGTTGAAATGTTTTGTTGTTTACAGGAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAG-AAAAGCAGCTATAGACA</genome_strand>
        <mrna_strand>TCTCTCTCTTCTA-GGTTTGTGAGAATCGATCTCAATCGAACTTCAAAAAAAACTTAACAATCAATATG...................................................................................GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGCGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGACGTCGCCAGTACTAGAAAAAGCAGCTACAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728374" ref_strand="+" ref_description="SGN-E728374 [LA17CE03]">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="47964" stop="49219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48264" g_stop="48919" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-E728374" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48264" e_stop="48919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATCAACCAGGTTCTTACTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTTCGGGAGTACAACATGCAACTGCTGTGGCTCCCTGCATGGATGCCTCATTGGAAGTAGGCACGTTTCCTCGATTGACTACAGGGTCTATAATGACGGGTAATCAGCATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTTAGGATGCCTATGATTTTCTAATTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATTCAGTGTTGAGTTTGTGACATATCAGTTTCAGTGGAATGCCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGACATCATTCTCTAGCTTATTTATGGAAAAGTATATACCCCGGACTTTGAGGGATAGGAGGAGAGATGAGTTCTTAAGCCTAGAGCAAGGAAGGATGTCTGTTGCTGCTTATGAGGCCAAATTTCGTGCGCTATCCAGGTATGCCACTTAGCTTTGCTTCAGTCCACAAGAGCAGATTCGCCACTTTGTGAAAGGATTGAGGTCAGATTTGTAGGTCCCAGCCTTACAGGTAGCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="50129" stop="49199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49829" g_stop="49499" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49829" e_stop="49499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCGTAGGCTTGGCCAATGTCACAGTTTTAGCATTACAATCTAAGATTGCAAAATTTGGAGAAAGCCAAGTCAAACCCAGAATCACATCAAAATCAACCATTTCTAGAATAATCAAATCTACATGAGTATTGCTCCCCACAAAAGTCACAAGACAAGACCTATAAACCTTCTCAACTATCACAGACTCCCCCACAGGAGTAGAGACACGAATAGGCATGTCAAGCAAATCACAATATACATCAAGACCAGTAGCAAAGGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223856" ref_strand="+" ref_description="SGN-E223856 [cLEL-19-A21](-)">
      <seq>caaagttcaattagattaatttgattttttttaaaaaaaaatatagatacatanaaattatttgaattgtgatttcttttgcatatcaaaacgataaaaaaaaagttgtttgtaaaatgtttgtcaacaattgatagtgaacgagtagagtagaatatttgaggtactgatgttctttattgaaataattgggtaaaataagtaaatataaatataaaattattaaaattgtagcttaaatagcacaaacaagaatgatagatctcttcatgtacgagtttcaataccactaatgcaaataaatagtggtatagtttataacaagttctttacaaaatgtctatttatatggtaacactaaaatttaaattataatttagtatacattatattaattacacgcaaaactcatttaacataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="70776" stop="69746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70476" g_stop="70043" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E223856" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70476" e_stop="70043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTTCAATTAGATTAATTTGATTTTTTTTTAAAA-AAATATAGATACATAAAAATTATTTGAATTGTGATTTCTTTTGCATATCAAAACGAT-AAAAAAAAGTTGTTTGTAAAATGTTTGTCAACAATTGATAGTGAACGAGTAGAGTAGAATATTTGAGGTACTGATGTTCTTTATTGAAATAATTGGGTAAAATAAGTAAATATAAATATAAAATTATTAAAATTGTAGCTTAAATAGCACAAACAAGAATGATAGATCTCTTCATGTACGAGTTTCAATACCACTAATGCAAATAAATAGTGGTATAGTTTATAACAAGTTCTTTACAAAATGTCTATTTATATGGTAACACTAAAATTTAAATTATAATTTAGTATACATTATATTAATTACACGCAAAACTCATTTAACATAAAAAAAAAAAAGAGTT</genome_strand>
        <mrna_strand>CAAAGTTCAATTAGATTAATTTGATTTTTTTTAAAAAAAAATATAGATACATANAAATTATTTGAATTGTGATTTCTTTTGCATATCAAAACGATAAAAAAAAAGTTGTTTGTAAAATGTTTGTCAACAATTGATAGTGAACGAGTAGAGTAGAATATTTGAGGTACTGATGTTCTTTATTGAAATAATTGGGTAAAATAAGTAAATATAAATATAAAATTATTAAAATTGTAGCTTAAATAGCACAAACAAGAATGATAGATCTCTTCATGTACGAGTTTCAATACCACTAATGCAAATAAATAGTGGTATAGTTTATAACAAGTTCTTTACAAAATGTCTATTTATATGGTAACACTAAAATTTAAATTATAATTTAGTATACATTATATTAATTACACGCAAAACTCATTTAACATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224269" ref_strand="+" ref_description="SGN-E224269 [cLEL-19-A21](-)">
      <seq>tttgtaaaatgtttgtcaacaattgatagtgaacgagtagagtagaatatttgaggtactgatgttctttattgaaataattgggtaaaataagtaaatataaatataaaattattaaaattgtagcttaaatagcacaaacaagaatgatagatctcttcatgtacgagtttcaataccactaatgcaaataaatagtggtatagtttataacaagttctttacaaaatgtctatttatatggtaacactaaaatttaaattataatttagtatacattatattaattacacgcaaaactcatttaacataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="70670" stop="69746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70370" g_stop="70043" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E224269" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70370" e_stop="70043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAAAATGTTTGTCAACAATTGATAGTGAACGAGTAGAGTAGAATATTTGAGGTACTGATGTTCTTTATTGAAATAATTGGGTAAAATAAGTAAATATAAATATAAAATTATTAAAATTGTAGCTTAAATAGCACAAACAAGAATGATAGATCTCTTCATGTACGAGTTTCAATACCACTAATGCAAATAAATAGTGGTATAGTTTATAACAAGTTCTTTACAAAATGTCTATTTATATGGTAACACTAAAATTTAAATTATAATTTAGTATACATTATATTAATTACACGCAAAACTCATTTAACATAAAAAAAAAAAAGAGTT</genome_strand>
        <mrna_strand>TTTGTAAAATGTTTGTCAACAATTGATAGTGAACGAGTAGAGTAGAATATTTGAGGTACTGATGTTCTTTATTGAAATAATTGGGTAAAATAAGTAAATATAAATATAAAATTATTAAAATTGTAGCTTAAATAGCACAAACAAGAATGATAGATCTCTTCATGTACGAGTTTCAATACCACTAATGCAAATAAATAGTGGTATAGTTTATAACAAGTTCTTTACAAAATGTCTATTTATATGGTAACACTAAAATTTAAATTATAATTTAGTATACATTATATTAATTACACGCAAAACTCATTTAACATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353715" ref_strand="+" ref_description="SGN-E353715 [cTOS-10-K9]">
      <seq>ggaaaaatttcatgaatatgctatcagatggagggaacaagctgctaggtttaaaccaccgatgaaggagtcagagatgattgacgtttttctccaggcgcaagaacctgattactttctctatctgctttctgccgtagggaagacattcgctgaagttattaaggtaggggaaatggtggaaaatggtatcaagtctggaaagattgtaagtcaggctgccttaaaatccacaacacaagtgcttcaaaatggttctggaaatattgagggaagaagagaagggaggatgtggccactattgtatcagcgcctaggactcatgttctaggtaattccccacaacactattttccttcccaagctccacaatattctatgccatacactccatatcatggttttaatgcacaaccaattgcacccccttcttatccaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="87032" stop="85992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86732" g_stop="86292" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E353715" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86732" e_stop="86292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATTTTCGTGAATATGCTATCAGATGGAGGGAACAAGCTGCTAGAGTTAAACCAACGACGAAGGAGTCAGAGATGATCAACATTTTTCTCCAAGCGCAAGAACCTGATTACTTTCACTATCTGCTTTCTGCCATATGGAAGTCATTCGCTGAAG--A-TAAGGTAGGGGAAATAGTGGGAAATGGCATCAAGTCTGGAAAGATTGTAAGTCAAGATGCCTTAAAAGTCACAACACAAGTGCTTCAAAATGGTTCTGGAAATATTGGAGGGAAGAAGAGAAGGGAGGATGTGGCCACTATTGTATCAGCGCCTAGGACTCATGTTCAAGGTAATTCCCCACAAGACTATTTTCCTTCCCAAGCTCCACAATATTCTGTTCCATACAGTCCATATCATGTTTTTAATGCACAACCAATTGCACCCCGTTCTTATCCACAATG</genome_strand>
        <mrna_strand>GGAAAAATTTCATGAATATGCTATCAGATGGAGGGAACAAGCTGCTAGGTTTAAACCACCGATGAAGGAGTCAGAGATGATTGACGTTTTTCTCCAGGCGCAAGAACCTGATTACTTTCTCTATCTGCTTTCTGCCGTAGGGAAGACATTCGCTGAAGTTATTAAGGTAGGGGAAATGGTGGAAAATGGTATCAAGTCTGGAAAGATTGTAAGTCAGGCTGCCTTAAAATCCACAACACAAGTGCTTCAAAATGGTTCTGGAAATATT-GAGGGAAGAAGAGAAGGGAGGATGTGGCCACTATTGTATCAGCGCCTAGGACTCATGTTCTAGGTAATTCCCCACAACACTATTTTCCTTCCCAAGCTCCACAATATTCTATGCCATACACTCCATATCATGGTTTTAATGCACAACCAATTGCACCCCCTTCTTATCCACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274122" ref_strand="+" ref_description="SGN-E274122 [cLEN-8-M5]">
      <seq>tatgataagtaatccactctttgtgtcaactgccccgactaacaacatcctgtagacaatgatggtgcccaaatccaacagcgatcctctgcccaaagttcggcttgatcacagttacactcttgaagaggccattaaaattccaagctctcatcccaacattcatcaatatggttaccctgtcaaaattgagaagatggtcaagaatgaggaacatgaagaaatgactaagaaaatgaagagttctgaacagagtataagagatatgaaaggaccaagaggccacaaaggcatctcgttcagtgacttgtgtatgtttccctcacgtccatttgcctgctggttttaaaattccaaagtttgaaaaatacgatggtcacggagacctcatagctcatctaaagatatattgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="87659" stop="86645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87359" g_stop="86945" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E274122" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87359" e_stop="86945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGATAAGTAATCCACTCTTTGTGTCAATTGCCCCGACTAACAGCATCCGGCAGCCAACGATGGTGCCCAAATCCAACAGCGATCCTCTAACCAAAGTTCGGCATGATCAGAGTTACACTCTTGAAGAGGCCATTAAAATTCCAAGCTCTCATCCCCACATTCATCAACATAGTTCCCCTGTCGAAATTGAGAAGATGGTCAAGAATGAGGAACGTGAAGAAATGACTAAGAAAATGAAGAATTTGGAACAGAGTATAAGAGATATGCAAGGACTAGGAGGCCACAAAGGCATCTCGTTCAGTGACTTGTGTATGTTT-TCTCACGTCCATTTGCCTGCTGGTTTTAAAACTCCAAAGTTTGAAAAATACGATGGTCACGGAGACCCCATAGCTCATCTAAAGATATATTGCAAC</genome_strand>
        <mrna_strand>TATGATAAGTAATCCACTCTTTGTGTCAACTGCCCCGACTAACAACATCCTGTAGACAATGATGGTGCCCAAATCCAACAGCGATCCTCTGCCCAAAGTTCGGCTTGATCACAGTTACACTCTTGAAGAGGCCATTAAAATTCCAAGCTCTCATCCCAACATTCATCAATATGGTTACCCTGTCAAAATTGAGAAGATGGTCAAGAATGAGGAACATGAAGAAATGACTAAGAAAATGAAGAGTTCTGAACAGAGTATAAGAGATATGAAAGGACCAAGAGGCCACAAAGGCATCTCGTTCAGTGACTTGTGTATGTTTCCCTCACGTCCATTTGCCTGCTGGTTTTAAAATTCCAAAGTTTGAAAAATACGATGGTCACGGAGACCTCATAGCTCATCTAAAGATATATTGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373117" ref_strand="+" ref_description="SGN-E373117 [TUS-32-M23]">
      <seq>tcttctagcttgtccaaatactgtcgtaattttggcaaacgtaccgtcgtcttcaactcaaccgcaactctagccagtcttcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtagatgttcttgtgatgatgacttccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="89834" stop="88979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89539" g_stop="89270" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="299" r_length="269" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E373117" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89539" e_stop="89270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACAAACGTGCCGTCGTCTTCAACTCAACCGCAACTCTAGCCAGTCTTCATTACACCGGATTTCAAGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTCGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTTATGTATTTTAGCTTCTTAGATACTCTTAGA-TTAGTAATTTGAGGATAGATGTTCTTGTGATGATGACTTCCAGATTTAAGGGGATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAT</genome_strand>
        <mrna_strand>TTTGGCAAACGTACCGTCGTCTTCAACTCAACCGCAACTCTAGCCAGTCTTCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAG-TAGATGTTCTTGTGATGATGACTTCCAGATTT-TGGGGATAATAATAGTTGTTGAGTTTTTAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298638" ref_strand="+" ref_description="SGN-E298638 [cLET-44-A20]">
      <seq>tcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtacatgttcttgtgatgatgactgccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="89789" stop="88979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89489" g_stop="89270" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E298638" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89489" e_stop="89270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTACACCGGATTTCAAGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTCGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTTATGTATTTTAGCTTCTTAGATACTCTTAGA-TTAGTAATTTGAGGATAGATGTTCTTGTGATGATGACTTCCAGATTTAAGGGGATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAT</genome_strand>
        <mrna_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAG-TACATGTTCTTGTGATGATGACTGCCAGATTT-TGGGGATAATAATAGTTGTTGAGTTTTTAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="98285" stop="99062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98585" g_stop="98761" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98585" e_stop="98761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACATACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="99766" stop="101078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100066" g_stop="100778" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100066" e_stop="100778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTTACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCATGTGCCCTAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTAATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTATAGATTCGTAATTCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCAACCTTCTTCTTTACAAACAGAACCGGAGCACCCCAAGGAGATGCATTTGGTCTAATAAAGCCTTTGCTTAGCAACTC-TTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTCA-CAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="99766" stop="100961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100066" g_stop="100661" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100066" e_stop="100661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTTACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCATGTGCCCTAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTAATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTATAGATTCGTAATTCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="99766" stop="100891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100066" g_stop="100591" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100066" e_stop="100591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTTACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCATGTGCCCTAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTAATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTATAGATTCGTAATTCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="99837" stop="101115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100137" g_stop="100816" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100137" e_stop="100816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTTACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCATGTGCCCTAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTAATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTATAGATTCGTAATTCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCAACCTTCTTCTTTACAAACAGAACCGGAGCACCCCAAGGAGATGCATTTGGTCTAATAAAGCCTTTGCTTAGCAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="99837" stop="100795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100137" g_stop="100495" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100137" e_stop="100495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTTACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCATGTGCCCTAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTAATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTATAGATTCGTAATTCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="101889" stop="101004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101589" g_stop="101304" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101589" e_stop="101304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGGCCATCTTCACTCTATTTCGCGGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAATATCGGCAAAACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="102533" stop="101698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102233" g_stop="101998" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102233" e_stop="101998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGAGCTTGGTGTTGTAACCAAGGGTTATGATAATTGTAAATGCTGCATGCTAAGGATATTAATTGATTTTATGATATTATCTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTT-TCTTCTTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTC-TTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="-" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>agtatgtattaagcaatatcataaaattaactaatatccttagcatgcagcatttgcaattaccataacccttggttgcatcaccaagcacatcaatgaggactcacacctcctcatcatacttatttgggaatttagttcattggattgcatatattaacatatttcaagattcatcatatttattcccctcgtgtccttacgtgacactccactcctcaatatactatcctggcaccggaacgtggcacccgatccatattctatcctggtgtcagaacgtgacacccgatccatattctatcctggtgtcggaacgtgacacccgatccatattctatcctggtaccggaacgtggcacccgatccatattctatcctggtgtcggaacgtgacacccgatccatattctatcctggtaccggaacgtggcacccgatcccctaatctcaccactttcgttcatcaagccttcttttataccaaggcatcattattaacaaagtagattagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="+" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="101803" stop="103137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102089" g_stop="102470" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102471" i_stop="102701" i_length="231">
            <donor d_prob="0.241" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102702" g_stop="102837" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="515" r_length="133" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="+" ref_id="SGN-E242359" ref_strand="-">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="102089" e_stop="102470"/>
          <exon e_start="102702" e_stop="102837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATATATTAGATAATATCATAAAATCAATTAATATCCTTAGCATGCAGCATTTACAATTATCATAACCCTTGGTTACAACACCAAGCTCATCAATGAGGACTCACGCCTCCTCATCATACTCATTTGGGAATTAGGTTCATTAGATTGAATATATTAACATCTTTCAAGATTCATTATCTTTATTCCTCTCGTGTCGGTACGTGACACTCCGCTTCTC-ATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGTGTCACTCTGATCCTTATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTATCGGAACGTGACACTTCTATCCTCATATACTATCCTGGTACCAGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGATACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCAATCCATATTCTATCCTGGTGTCGGAATGTGACACTCCGATCCTCATATACTATCCTGGTACCGAAACGTCGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACAATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAAAGTAGATTAGG</genome_strand>
        <mrna_strand>AGTATGTATTAAGCAATATCATAAAATTAACTAATATCCTTAGCATGCAGCATTTGCAATTACCATAACCCTTGGTTGCATCACCAAGCACATCAATGAGGACTCACACCTCCTCATCATACTTATTTGGGAATTTAGTTCATTGGATTGCATATATTAACATATTTCAAGATTCATCATATTTATTCCCCTCGTGTCCTTACGTGACACTCCACTCCTCAATATACTATCCTGGCACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCAGAACGTGACACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACAC-CCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTG.......................................................................................................................................................................................................................................GTGTCGGAACGTGACAC-CCGAT-C-CATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACCACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATTATTAACAAAGTAGATTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215035" ref_strand="+" ref_description="SGN-E215035 [cLEC-78-O5]">
      <seq>gaaaaaatttcaagaatgttgtgaagatgaaaatcttgctaaaaagtctttatgcttggatgttcctacaaggtggaattccacctacatgatgttgagcagggttattgaatatgaaggggcaattgtagagtacgccgatcgtgcaattggcttgacactatatcttaagtttgttgataaaaactctacagctacacttttgagtagtgattgtgagggtgtaaagagaattataaaatttcttgaaatgttttttagtcttactttgaagatatctggttcacgatatgttacatccaatcttcatttttttgaattttttcaagttggtgtttacttgaatcaattgatatcaaatgaagatcaagttttgtctaaaatggaagaaaatatgaaggagaatggcaaatattagggtgatgctgaaaaaatgaataagatggttttcataccatgtgttttggatcctcgtcacaaatttagtactcttggctttgcacttaagaagatgtttggagaaaaaggggctgctatagaaaatggtgtgggaacgtacatggaagctttgtttaatgagtatacaaaccccatttcaaatgataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="112969" stop="111760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112669" g_stop="112060" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E215035" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112669" e_stop="112060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAACTTTCAAGAATGTTGTGAAGATGAAAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCAATAAGATAGAATTCCACCTACATGATGTTGAGCAAGGTTATTGAATATGAAAGGGCAATTGTAGAGTACGCCGATCGTGATATTGGCTTGTCACTATATCTTAAGTTTGTTGATAAAAATTCTACAGGTACACTTTTGAATAGTGACTGGGAGGGCGTAAAGAGAATTACAAAATTTCTTGAAATGTTTTTTAATCTTACTTTGAAGATATCTGGTTCACGATATGTTACATATAATCTTTATTTTCTTGAAAGTTGTCAAGTTGGTGTTTACTTGAATCAGTTGATATCAAATGAAGATCATGTTTTGGATAAAATGACAGAAAATATGAAGGAGAAATTTGACAACTATTGGGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGCGTTTTGGATCCTCGTCACAAATTTAGAACTCTTGGCTTTGAACTTAAGAAGATGTTTGGAGAAAAAGGGGCTGCTATAGAAAATGGTGTGCGAACGTACATGGAAGCTTTGTTTAATGAGTACACAAAGCCCATTTCAAATTATAAA</genome_strand>
        <mrna_strand>GAAAAAATTTCAAGAATGTTGTGAAGATGAAAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCTACAAGGTGGAATTCCACCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACGCCGATCGTGCAATTGGCTTGACACTATATCTTAAGTTTGTTGATAAAAACTCTACAGCTACACTTTTGAGTAGTGATTGTGAGGGTGTAAAGAGAATTATAAAATTTCTTGAAATGTTTTTTAGTCTTACTTTGAAGATATCTGGTTCACGATATGTTACATCCAATCTTCATTTTTTTGAATTTTTTCAAGTTGGTGTTTACTTGAATCAATTGATATCAAATGAAGATCAAGTTTTGTCTAAAATGGAAGAAAATATGAAGGAG-AA--TGGCAAATATTAGGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGTGTTTTGGATCCTCGTCACAAATTTAGTACTCTTGGCTTTGCACTTAAGAAGATGTTTGGAGAAAAAGGGGCTGCTATAGAAAATGGTGTGGGAACGTACATGGAAGCTTTGTTTAATGAGTATACAAACCCCATTTCAAATGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347322" ref_strand="+" ref_description="SGN-E347322 [cTOF-33-O19]">
      <seq>agaagcatgtgtctattgaacgagttaggcaagcagtgagatacatcaggcaatctcctgctaggtcgaaaaaatttcaagaatgttgtgaagatgaaaatcttgctaaaaagtctttatgcttggatgttcctacaaggtggaattccacctacatgatgttgagcagggttattgaatatgaaggggcaattgtagagtacgccgatcgtgcaattggcttgacactatatcttaagtttgttgataaaaactctacagctacacttttgagtagtgattgtgagggtgtaaagagaattataaaatttcttgaaatgttttttagtcttactttgaagatatctggttcacgatatgttacatccaatcttcatttttttgaattttttcaagttggtgtttacttgaatcaattgatatcaaatgaagatcaagttttgtctaaaatggaagaaaatatgaaggagaatggcaaatattacggtgatgctgaaaaaatgaataagatggttttcataccatgtgttttggatcctcgtcacaaatttagtactcttggctttgcacttaagaagatgtttggagaaaaaggggctgctatagaaaatggtgtgggaacgtacatggaagccttgtttaatgagtatacaaaccccatttcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0020F17-4zsnb/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0020F17.1" temp_strand="-" temp_description="C04HBa0020F17.1  CT990489.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0020F17 sequenced_by:sanger upload_account_name:uk">
        <position start="113030" stop="111766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112738" g_stop="112066" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0020F17.1" gen_strand="-" ref_id="SGN-E347322" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0020F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112738" e_stop="112066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCAAATATGTCAATTGAACGAGTTAGGCGAGCAGTGACATATATCAGGCAATCTCTTGCTTGGAAGTAAAACTTTCAAGAATGTTGTGAAGATGAAAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCAATAAGATAGAATTCCACCTACATGATGTTGAGCAAGGTTATTGAATATGAAAGGGCAATTGTAGAGTACGCCGATCGTGATATTGGCTTGTCACTATATCTTAAGTTTGTTGATAAAAATTCTACAGGTACACTTTTGAATAGTGACTGGGAGGGCGTAAAGAGAATTACAAAATTTCTTGAAATGTTTTTTAATCTTACTTTGAAGATATCTGGTTCACGATATGTTACATATAATCTTTATTTTCTTGAAAGTTGTCAAGTTGGTGTTTACTTGAATCAGTTGATATCAAATGAAGATCATGTTTTGGATAAAATGACAGAAAATATGAAGGAGAAATTTGACAACTATTGGGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGCGTTTTGGATCCTCGTCACAAATTTAGAACTCTTGGCTTTGAACTTAAGAAGATGTTTGGAGAAAAAGGGGCTGCTATAGAAAATGGTGTGCGAACGTACATGGAAGCTTTGTTTAATGAGTACACAAAGCCCATTTCAAAT</genome_strand>
        <mrna_strand>AGAAGC--ATGTGTCTATTGAACGAGTTAGGCAAGCAGTGAGATACATCAGGCAATCTCCTGCTAGGTCGAAAAAATTTCAAGAATGTTGTGAAGATGAAAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCTACAAGGTGGAATTCCACCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACGCCGATCGTGCAATTGGCTTGACACTATATCTTAAGTTTGTTGATAAAAACTCTACAGCTACACTTTTGAGTAGTGATTGTGAGGGTGTAAAGAGAATTATAAAATTTCTTGAAATGTTTTTTAGTCTTACTTTGAAGATATCTGGTTCACGATATGTTACATCCAATCTTCATTTTTTTGAATTTTTTCAAGTTGGTGTTTACTTGAATCAATTGATATCAAATGAAGATCAAGTTTTGTCTAAAATGGAAGAAAATATGAAGGAG-AA--TGGCAAATATTACGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGTGTTTTGGATCCTCGTCACAAATTTAGTACTCTTGGCTTTGCACTTAAGAAGATGTTTGGAGAAAAAGGGGCTGCTATAGAAAATGGTGTGGGAACGTACATGGAAGCCTTGTTTAATGAGTATACAAACCCCATTTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>83</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1206" PGL_stop="1766"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1206" e_stop="1268"/>
            <exon e_start="1352" e_stop="1499"/>
            <exon e_start="1734" e_stop="1766"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1206" e_stop="1268" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1269" i_stop="1351" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1352" e_stop="1499" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1500" i_stop="1733" i_length="234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1734" e_stop="1766" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1206" stop="1268"/>
              <exon start="1352" stop="1499"/>
              <exon start="1734" stop="1766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239997" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATGATGATGGTTCTGTGCAGAAAATCCCTGAAATTCCAGATGATCTTAAAGTTATTTATAA : GACTGTCTGGGAGATCAAGCAACGGACCCTGGTTGACATGGCTGTAGACCGTGGTTGCTACATAGATCAGAGTCAAAGCCTCAACATCCATATGGATCAACCCAACTTTGGAAAGCTCACTTCCCTTCATTTTCATGCTTGGTCCAGG : GGTTTGAAAACTGGAATGTACTATCTACGATCA</gDNA_template>
            <first_frame> T  *  *  W  F  C  A  E  N  P  *  N  S  R  *  S  *  S  Y  L  *  :  D  C  L  G  D  Q  A  T  D  P  G  *  H  G  C  R  P  W  L  L  H  R  S  E  S  K  P  Q  H  P  Y  G  S  T  Q  L  W  K  A  H  F  P  S  F  S  C  L  V  Q   : G  F  E  N  W  N  V  L  S  T  I  </first_frame>
            <second_frame>  H  D  D  G  S  V  Q  K  I  P  E  I  P  D  D  L  K  V  I  Y  K :   T  V  W  E  I  K  Q  R  T  L  V  D  M  A  V  D  R  G  C  Y  I  D  Q  S  Q  S  L  N  I  H  M  D  Q  P  N  F  G  K  L  T  S  L  H  F  H  A  W  S  R  :  G  L  K  T  G  M  Y  Y  L  R  S </second_frame>
            <third_frame>   M  M  M  V  L  C  R  K  S  L  K  F  Q  M  I  L  K  L  F  I   : R  L  S  G  R  S  S  N  G  P  W  L  T  W  L  *  T  V  V  A  T  *  I  R  V  K  A  S  T  S  I  W  I  N  P  T  L  E  S  S  L  P  F  I  F  M  L  G  P  G :   V  *  K  L  E  C  T  I  Y  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1207" stop="1268"/>
                    <exon start="1352" stop="1499"/>
                    <exon start="1734" stop="1766"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HDDGSVQKIPEIPDDLKVIYKTVWEIKQRTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSRGLKTGMYYLRS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="17963" PGL_stop="19475"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17963" e_stop="18315"/>
            <exon e_start="18693" e_stop="19475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17963" e_stop="18315" e_length="353"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18316" i_stop="18692" i_length="377"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="18693" e_stop="19475" e_length="783"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17963" stop="18315"/>
              <exon start="18693" stop="18800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17963" stop="18315"/>
              <exon start="18693" stop="18787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17964" stop="18315"/>
              <exon start="18693" stop="18940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17964" stop="18315"/>
              <exon start="18693" stop="18848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17964" stop="18315"/>
              <exon start="18693" stop="18780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18750" stop="19475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18967" stop="19475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18990" stop="19465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19014" stop="19465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATTGTTCTTGTCAACTTTTGCAAAAATAAACATTTCATATATACAAATATACATGTGTAATATTGTTCACTACAAGGTGGCGAATTCGAATGATAACAGGAGTAGTAGACAAGACGATGAAGGGATTAATGTGTTTAATACGATGTTTCAAGGGAATATTAATAGAGAAGAAGAAATGTCTGTTATGGTTTCTGCATTAACTCGTGTTGTTGTTGGTAATCATCCTAGTGAAAATATCGAAAATCATCATCAAAATAATACATTGATTTCTAGGGGTGTTGGAGAAAAAAGAGGACGTGATGAAGTATTATTACATGGAACTAATTCTTCTCATATGATATTATCATCAG : GTGGTGAAGGTTCAAGCATTAGGACAACAAGAGAAGCAACATTCATATACACTAATTCAACAAACAATAGCATTATTGATGAATCTGTTAATAATCAAGTAAGACGACGATACAGAGGAGTTAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAATAAGAGATCCATATAAAGCAGCGCGTGTTTGGTTAGGTACTTTTGATACTGCTGAAGGGGCTGCTAGAGCTTATGATGAAGCTGCTCTTACATTTAGAGGTAGTAAAGCAAAACTAAATTTCCCAGAAAATGTTACATTATTAGTGCCTTCTTCAATTCAACAACCCATTTACTCCTCACCCGACCCAGCCATTTCTCCGTATCGTTCCAATTTTATTATTGGACATACCTCTACGGAAGTGGAGCCTATACTTCACACCAATCCTTCAAATTTTATTGAGCCTATAGCTCACACTTCATCTCTGTATCGTTCCAATTTTATTGAACGGAATCATCACATGGTGCAGCAGGAGCCGTATTTTCAGGCAGGTAGTACTAGTGGTGGAAGTGATTTTCATCAAACTACAAATTCTTCTAATTCGTCAATTTATGATCACCCTTCTTCTTCATCTGGATAATTTTTGTTGTACTACTAGAATATCTTTTTCATCTTCCTAGAAGATTTTGACTAGCTAATAGTGATTTTTCTTTTAAAGGAATGTATTGGTGGCCCCACATAAATGAGGTCCTTTTATTTTCTTGCATAACAGTCTTTAATTTGACTTTTGTTGGTATTCGTGACGTTTA</gDNA_template>
            <first_frame> F  I  V  L  V  N  F  C  K  N  K  H  F  I  Y  T  N  I  H  V  *  Y  C  S  L  Q  G  G  E  F  E  *  *  Q  E  *  *  T  R  R  *  R  D  *  C  V  *  Y  D  V  S  R  E  Y  *  *  R  R  R  N  V  C  Y  G  F  C  I  N  S  C  C  C  W  *  S  S  *  *  K  Y  R  K  S  S  S  K  *  Y  I  D  F  *  G  C  W  R  K  K  R  T  *  *  S  I  I  T  W  N  *  F  F  S  Y  D  I  I  I  R :   W  *  R  F  K  H  *  D  N  K  R  S  N  I  H  I  H  *  F  N  K  Q  *  H  Y  *  *  I  C  *  *  S  S  K  T  T  I  Q  R  S  *  T  E  A  M  G  E  M  G  S  *  N  K  R  S  I  *  S  S  A  C  L  V  R  Y  F  *  Y  C  *  R  G  C  *  S  L  *  *  S  C  S  Y  I  *  R  *  *  S  K  T  K  F  P  R  K  C  Y  I  I  S  A  F  F  N  S  T  T  H  L  L  L  T  R  P  S  H  F  S  V  S  F  Q  F  Y  Y  W  T  Y  L  Y  G  S  G  A  Y  T  S  H  Q  S  F  K  F  Y  *  A  Y  S  S  H  F  I  S  V  S  F  Q  F  Y  *  T  E  S  S  H  G  A  A  G  A  V  F  S  G  R  *  Y  *  W  W  K  *  F  S  S  N  Y  K  F  F  *  F  V  N  L  *  S  P  F  F  F  I  W  I  I  F  V  V  L  L  E  Y  L  F  H  L  P  R  R  F  *  L  A  N  S  D  F  S  F  K  G  M  Y  W  W  P  H  I  N  E  V  L  L  F  S  C  I  T  V  F  N  L  T  F  V  G  I  R  D  V   </first_frame>
            <second_frame>  S  L  F  L  S  T  F  A  K  I  N  I  S  Y  I  Q  I  Y  M  C  N  I  V  H  Y  K  V  A  N  S  N  D  N  R  S  S  R  Q  D  D  E  G  I  N  V  F  N  T  M  F  Q  G  N  I  N  R  E  E  E  M  S  V  M  V  S  A  L  T  R  V  V  V  G  N  H  P  S  E  N  I  E  N  H  H  Q  N  N  T  L  I  S  R  G  V  G  E  K  R  G  R  D  E  V  L  L  H  G  T  N  S  S  H  M  I  L  S  S   : G  G  E  G  S  S  I  R  T  T  R  E  A  T  F  I  Y  T  N  S  T  N  N  S  I  I  D  E  S  V  N  N  Q  V  R  R  R  Y  R  G  V  R  Q  R  P  W  G  K  W  A  A  E  I  R  D  P  Y  K  A  A  R  V  W  L  G  T  F  D  T  A  E  G  A  A  R  A  Y  D  E  A  A  L  T  F  R  G  S  K  A  K  L  N  F  P  E  N  V  T  L  L  V  P  S  S  I  Q  Q  P  I  Y  S  S  P  D  P  A  I  S  P  Y  R  S  N  F  I  I  G  H  T  S  T  E  V  E  P  I  L  H  T  N  P  S  N  F  I  E  P  I  A  H  T  S  S  L  Y  R  S  N  F  I  E  R  N  H  H  M  V  Q  Q  E  P  Y  F  Q  A  G  S  T  S  G  G  S  D  F  H  Q  T  T  N  S  S  N  S  S  I  Y  D  H  P  S  S  S  S  G  *  F  L  L  Y  Y  *  N  I  F  F  I  F  L  E  D  F  D  *  L  I  V  I  F  L  L  K  E  C  I  G  G  P  T  *  M  R  S  F  Y  F  L  A  *  Q  S  L  I  *  L  L  L  V  F  V  T  F  </second_frame>
            <third_frame>   H  C  S  C  Q  L  L  Q  K  *  T  F  H  I  Y  K  Y  T  C  V  I  L  F  T  T  R  W  R  I  R  M  I  T  G  V  V  D  K  T  M  K  G  L  M  C  L  I  R  C  F  K  G  I  L  I  E  K  K  K  C  L  L  W  F  L  H  *  L  V  L  L  L  V  I  I  L  V  K  I  S  K  I  I  I  K  I  I  H  *  F  L  G  V  L  E  K  K  E  D  V  M  K  Y  Y  Y  M  E  L  I  L  L  I  *  Y  Y  H  Q  :  V  V  K  V  Q  A  L  G  Q  Q  E  K  Q  H  S  Y  T  L  I  Q  Q  T  I  A  L  L  M  N  L  L  I  I  K  *  D  D  D  T  E  E  L  D  R  G  H  G  G  N  G  Q  L  K  *  E  I  H  I  K  Q  R  V  F  G  *  V  L  L  I  L  L  K  G  L  L  E  L  M  M  K  L  L  L  H  L  E  V  V  K  Q  N  *  I  S  Q  K  M  L  H  Y  *  C  L  L  Q  F  N  N  P  F  T  P  H  P  T  Q  P  F  L  R  I  V  P  I  L  L  L  D  I  P  L  R  K  W  S  L  Y  F  T  P  I  L  Q  I  L  L  S  L  *  L  T  L  H  L  C  I  V  P  I  L  L  N  G  I  I  T  W  C  S  R  S  R  I  F  R  Q  V  V  L  V  V  E  V  I  F  I  K  L  Q  I  L  L  I  R  Q  F  M  I  T  L  L  L  H  L  D  N  F  C  C  T  T  R  I  S  F  S  S  S  *  K  I  L  T  S  *  *  *  F  F  F  *  R  N  V  L  V  A  P  H  K  *  G  P  F  I  F  L  H  N  S  L  *  F  D  F  C  W  Y  S  *  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17964" stop="18315"/>
                    <exon start="18693" stop="19306"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>963</number_coding_nucleotides>
                  <number_encoded_amino_acids>321</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLFLSTFAKINISYIQIYMCNIVHYKVANSNDNRSSRQDDEGINVFNTMFQGNINREEEMSVMVSALTRVVVGNHPSENIENHHQNNTLISRGVGEKRGRDEVLLHGTNSSHMILSSGGEGSSIRTTREATFIYTNSTNNSIIDESVNNQVRRRYRGVRQRPWGKWAAEIRDPYKAARVWLGTFDTAEGAARAYDEAALTFRGSKAKLNFPENVTLLVPSSIQQPIYSSPDPAISPYRSNFIIGHTSTEVEPILHTNPSNFIEPIAHTSSLYRSNFIERNHHMVQQEPYFQAGSTSGGSDFHQTTNSSNSSIYDHPSSSSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="18454" e_stop="19475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="18454" e_stop="19475" e_length="1022"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18454" stop="19156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18455" stop="18989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18750" stop="19475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18967" stop="19475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18990" stop="19465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19014" stop="19465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAAAATCTCAAGTAATCAATCTTTTTATTTATGATGTATATTTACATTTTTAGCACATGTCTACATCTTTTAAATTGTTGCATTTGTCCTTTTGTTTTTATATGGAATGTTTTTGCATATGACAAACAGTCTTTCTATCTCTGATCAGGGATCTAGAATTTTCATTAAGAGATGATGAGTCCATGCATTATATTGAGTATGTTGTTATGGGTATTGATACTAAATTATGTTATATAGGTGGTGAAGGTTCAAGCATTAGGACAACAAGAGAAGCAACATTCATATACACTAATTCAACAAACAATAGCATTATTGATGAATCTGTTAATAATCAAGTAAGACGACGATACAGAGGAGTTAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAATAAGAGATCCATATAAAGCAGCGCGTGTTTGGTTAGGTACTTTTGATACTGCTGAAGGGGCTGCTAGAGCTTATGATGAAGCTGCTCTTACATTTAGAGGTAGTAAAGCAAAACTAAATTTCCCAGAAAATGTTACATTATTAGTGCCTTCTTCAATTCAACAACCCATTTACTCCTCACCCGACCCAGCCATTTCTCCGTATCGTTCCAATTTTATTATTGGACATACCTCTACGGAAGTGGAGCCTATACTTCACACCAATCCTTCAAATTTTATTGAGCCTATAGCTCACACTTCATCTCTGTATCGTTCCAATTTTATTGAACGGAATCATCACATGGTGCAGCAGGAGCCGTATTTTCAGGCAGGTAGTACTAGTGGTGGAAGTGATTTTCATCAAACTACAAATTCTTCTAATTCGTCAATTTATGATCACCCTTCTTCTTCATCTGGATAATTTTTGTTGTACTACTAGAATATCTTTTTCATCTTCCTAGAAGATTTTGACTAGCTAATAGTGATTTTTCTTTTAAAGGAATGTATTGGTGGCCCCACATAAATGAGGTCCTTTTATTTTCTTGCATAACAGTCTTTAATTTGACTTTTGTTGGTATTCGTGACGTTTA</gDNA_template>
            <first_frame> R  K  I  S  S  N  Q  S  F  Y  L  *  C  I  F  T  F  L  A  H  V  Y  I  F  *  I  V  A  F  V  L  L  F  L  Y  G  M  F  L  H  M  T  N  S  L  S  I  S  D  Q  G  S  R  I  F  I  K  R  *  *  V  H  A  L  Y  *  V  C  C  Y  G  Y  *  Y  *  I  M  L  Y  R  W  *  R  F  K  H  *  D  N  K  R  S  N  I  H  I  H  *  F  N  K  Q  *  H  Y  *  *  I  C  *  *  S  S  K  T  T  I  Q  R  S  *  T  E  A  M  G  E  M  G  S  *  N  K  R  S  I  *  S  S  A  C  L  V  R  Y  F  *  Y  C  *  R  G  C  *  S  L  *  *  S  C  S  Y  I  *  R  *  *  S  K  T  K  F  P  R  K  C  Y  I  I  S  A  F  F  N  S  T  T  H  L  L  L  T  R  P  S  H  F  S  V  S  F  Q  F  Y  Y  W  T  Y  L  Y  G  S  G  A  Y  T  S  H  Q  S  F  K  F  Y  *  A  Y  S  S  H  F  I  S  V  S  F  Q  F  Y  *  T  E  S  S  H  G  A  A  G  A  V  F  S  G  R  *  Y  *  W  W  K  *  F  S  S  N  Y  K  F  F  *  F  V  N  L  *  S  P  F  F  F  I  W  I  I  F  V  V  L  L  E  Y  L  F  H  L  P  R  R  F  *  L  A  N  S  D  F  S  F  K  G  M  Y  W  W  P  H  I  N  E  V  L  L  F  S  C  I  T  V  F  N  L  T  F  V  G  I  R  D  V   </first_frame>
            <second_frame>  G  K  S  Q  V  I  N  L  F  I  Y  D  V  Y  L  H  F  *  H  M  S  T  S  F  K  L  L  H  L  S  F  C  F  Y  M  E  C  F  C  I  *  Q  T  V  F  L  S  L  I  R  D  L  E  F  S  L  R  D  D  E  S  M  H  Y  I  E  Y  V  V  M  G  I  D  T  K  L  C  Y  I  G  G  E  G  S  S  I  R  T  T  R  E  A  T  F  I  Y  T  N  S  T  N  N  S  I  I  D  E  S  V  N  N  Q  V  R  R  R  Y  R  G  V  R  Q  R  P  W  G  K  W  A  A  E  I  R  D  P  Y  K  A  A  R  V  W  L  G  T  F  D  T  A  E  G  A  A  R  A  Y  D  E  A  A  L  T  F  R  G  S  K  A  K  L  N  F  P  E  N  V  T  L  L  V  P  S  S  I  Q  Q  P  I  Y  S  S  P  D  P  A  I  S  P  Y  R  S  N  F  I  I  G  H  T  S  T  E  V  E  P  I  L  H  T  N  P  S  N  F  I  E  P  I  A  H  T  S  S  L  Y  R  S  N  F  I  E  R  N  H  H  M  V  Q  Q  E  P  Y  F  Q  A  G  S  T  S  G  G  S  D  F  H  Q  T  T  N  S  S  N  S  S  I  Y  D  H  P  S  S  S  S  G  *  F  L  L  Y  Y  *  N  I  F  F  I  F  L  E  D  F  D  *  L  I  V  I  F  L  L  K  E  C  I  G  G  P  T  *  M  R  S  F  Y  F  L  A  *  Q  S  L  I  *  L  L  L  V  F  V  T  F  </second_frame>
            <third_frame>   E  N  L  K  *  S  I  F  L  F  M  M  Y  I  Y  I  F  S  T  C  L  H  L  L  N  C  C  I  C  P  F  V  F  I  W  N  V  F  A  Y  D  K  Q  S  F  Y  L  *  S  G  I  *  N  F  H  *  E  M  M  S  P  C  I  I  L  S  M  L  L  W  V  L  I  L  N  Y  V  I  *  V  V  K  V  Q  A  L  G  Q  Q  E  K  Q  H  S  Y  T  L  I  Q  Q  T  I  A  L  L  M  N  L  L  I  I  K  *  D  D  D  T  E  E  L  D  R  G  H  G  G  N  G  Q  L  K  *  E  I  H  I  K  Q  R  V  F  G  *  V  L  L  I  L  L  K  G  L  L  E  L  M  M  K  L  L  L  H  L  E  V  V  K  Q  N  *  I  S  Q  K  M  L  H  Y  *  C  L  L  Q  F  N  N  P  F  T  P  H  P  T  Q  P  F  L  R  I  V  P  I  L  L  L  D  I  P  L  R  K  W  S  L  Y  F  T  P  I  L  Q  I  L  L  S  L  *  L  T  L  H  L  C  I  V  P  I  L  L  N  G  I  I  T  W  C  S  R  S  R  I  F  R  Q  V  V  L  V  V  E  V  I  F  I  K  L  Q  I  L  L  I  R  Q  F  M  I  T  L  L  L  H  L  D  N  F  C  C  T  T  R  I  S  F  S  S  S  *  K  I  L  T  S  *  *  *  F  F  F  *  R  N  V  L  V  A  P  H  K  *  G  P  F  I  F  L  H  N  S  L  *  F  D  F  C  W  Y  S  *  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18578" stop="19306"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTVFLSLIRDLEFSLRDDESMHYIEYVVMGIDTKLCYIGGEGSSIRTTREATFIYTNSTNNSIIDESVNNQVRRRYRGVRQRPWGKWAAEIRDPYKAARVWLGTFDTAEGAARAYDEAALTFRGSKAKLNFPENVTLLVPSSIQQPIYSSPDPAISPYRSNFIIGHTSTEVEPILHTNPSNFIEPIAHTSSLYRSNFIERNHHMVQQEPYFQAGSTSGGSDFHQTTNSSNSSIYDHPSSSSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="37926" PGL_stop="28507"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37926" e_stop="37852"/>
            <exon e_start="37768" e_stop="37574"/>
            <exon e_start="35164" e_stop="35057"/>
            <exon e_start="34973" e_stop="34869"/>
            <exon e_start="34726" e_stop="34670"/>
            <exon e_start="34548" e_stop="34352"/>
            <exon e_start="33269" e_stop="33170"/>
            <exon e_start="31703" e_stop="31591"/>
            <exon e_start="30677" e_stop="30524"/>
            <exon e_start="30414" e_stop="30337"/>
            <exon e_start="29759" e_stop="29096"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.791" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37926" e_stop="37852" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37768" e_stop="37574" e_length="195"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
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          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCTCTCTCTCTCTTTTAGGGTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATG : GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG : GCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG : ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCT : GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA : GTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAG : GTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCA : GTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAG : GCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCAC : AACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAG : GAAGCGGAGAAGCACCTATCTGAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAAGAGATCAGAGATGTCAAGTTCCATTAATTGCTTATTTACTCATCATCACATTCATTAGCGCTGTAGTTTTATTTTGTAATGCATCCTTCTTTAGGGGTTAGCAAAAGGAAAATGGCTTTCTTTTCCCCTTTTAAAATG</gDNA_template>
            <first_frame> T  L  S  L  S  F  R  V  S  E  N  R  S  Q  S  N  S  E  K  N  S  I  I  N  M  :  E  G  D  G  K  L  E  A  Q  I  E  V  L  L  N  V  E  K  Q  M  R  Q  A  G  D  V  A  A  T  R  K  A  A  I  D  I  L  Q  L  C  F  E  A  R  A  W  K  T  L  N  E  Q  I  V  L  L  S  K  R  R  G  Q  L  K  Q  :  A  V  Q  A  M  V  Q  Q  A  M  Q  Y  I  D  Q  T  P  D  L  D  T  K  I  E  L  I  K  T  L  N  S  V  S  A  G  K  :  I  Y  V  E  I  E  R  A  R  L  I  K  K  L  A  K  I  K  E  E  Q  K  L  I  G  E  A  A  D  L  M  Q  E  V  A  :  V  E  T  F  G  A  M  A  K  T  E  K  I  A  F  I  L  E  Q  :  V  R  L  C  L  D  H  K  D  Y  V  R  A  Q  I  L  S  R  K  I  N  P  R  V  F  E  A  D  P  S  K  E  K  K  K  A  K  E  G  E  N  V  V  E  E  P  A  A  D  I  P  S  L  P  E  L  K  Q  I  Y  Y  Q  L  M  I  R :   Y  Y  S  H  S  N  D  Y  L  E  I  C  R  C  Y  K  A  I  Y  E  I  P  S  V  K  E  D  P  A  Q  W  I  P  :  V  L  R  K  I  C  W  Y  L  V  L  S  P  H  D  S  M  Q  S  S  L  H  N  S  T  L  E  D  K  N  L  S  E  I  P  H  F  R :   L  L  L  K  Q  L  I  T  M  E  V  I  Q  W  T  A  L  W  N  T  F  K  D  E  F  E  N  E  K  N  M  P  G  G  T  L  G  D  K  A  A  E  D  L  K  L  R  V  I  E  H  :  N  I  L  V  V  S  K  Y  Y  S  R  I  T  L  K  R  L  A  V  L  L  C  L  D  I  Q  :  E  A  E  K  H  L  S  E  M  V  V  S  K  A  L  V  A  K  I  D  R  P  M  G  I  V  C  F  Q  P  P  K  D  S  N  D  I  L  N  S  W  A  S  N  L  E  K  L  L  D  L  V  E  K  S  C  H  Q  I  H  K  E  T  M  V  H  K  A  A  L  K  A  *  K  T  L  I  G  Q  L  Y  W  *  E  P  S  R  A  S  H  Q  L  *  Q  F  R  S  G  R  S  L  *  Q  S  *  N  P  F  C  S  T  L  Y  S  E  K  Q  A  T  R  A  K  T  R  K  S  *  F  L  C  L  Y  Y  H  D  L  P  A  C  F  S  R  C  R  S  F  I  F  F  P  H  F  V  S  L  S  D  V  S  P  H  D  L  F  I  V  I  S  K  N  L  G  L  M  P  R  D  Q  R  C  Q  V  P  L  I  A  Y  L  L  I  I  T  F  I  S  A  V  V  L  F  C  N  A  S  F  F  R  G  *  Q  K  E  N  G  F  L  F  P  F  *  N  </first_frame>
            <second_frame>  L  S  L  S  L  L  G  F  L  R  I  D  L  N  R  T  P  K  K  T  Q  *  S  I  W :   K  V  M  G  N  W  R  R  K  L  R  C  F  *  M  *  R  S  R  *  G  K  L  A  M  S  L  L  L  E  K  Q  L  *  T  F  F  S  F  A  S  K  L  A  H  G  K  L  *  M  N  R  L  F  Y  C  L  S  A  V  D  N  *  N  R :   L  Y  R  P  W  S  N  R  P  C  N  T  L  T  R  R  P  I  L  T  P  R  *  N  L  S  K  H  *  T  V  C  L  L  E  R :   Y  T  L  R  L  R  E  L  A  *  L  R  S  S  Q  R  L  K  K  N  K  N  S  *  A  R  L  L  I  *  C  K  K  L  L :   L  K  P  L  E  R  W  Q  K  L  K  R  *  P  L  F  L  N  K :   F  V  Y  A  *  I  I  K  I  M  F  V  L  K  F  S  R  E  R  S  I  P  E  C  L  K  L  I  H  L  K  K  R  R  K  Q  R  R  V  K  M  W  L  R  N  L  L  Q  I  F  R  H  C  Q  S  *  S  R  S  T  I  N  *  *  L   : G  I  T  H  I  A  M  I  T  L  K  Y  V  A  V  T  R  L  Y  M  R  S  L  P  *  K  K  T  Q  H  S  G  Y  Q :   F  *  G  K  F  A  G  T  W  Y  C  L  P  M  I  L  C  N  Q  V  F  I  T  Q  L  W  R  T  K  I  F  Q  K  F  L  I  S   : G  C  F  *  S  N  *  L  P  W  K  S  F  S  G  L  L  Y  G  T  H  S  R  M  S  L  K  M  R  R  I  C  L  V  A  L  W  G  T  R  L  L  K  T  S  N  *  E  L  L  S  T :   T  S  L  S  S  Q  N  T  T  Q  E  *  P  *  R  G  W  L  F  Y  C  A  S  I  F  R :   K  R  R  S  T  Y  L  K  W  L  Y  Q  K  L  W  L  L  K  *  T  D  L  W  V  L  S  V  S  N  P  Q  K  T  A  M  I  S  *  I  L  G  R  L  I  W  R  S  C  L  T  L  S  K  R  V  A  T  R  S  T  K  K  Q  W  C  T  K  L  L  *  R  L  R  R  L  *  S  D  N  S  T  G  R  S  Q  A  E  P  H  I  N  Y  S  N  S  G  L  D  V  H  C  D  K  V  E  I  L  F  A  V  L  S  I  L  R  N  K  Q  Q  E  Q  K  L  A  N  L  D  S  S  A  C  T  I  T  I  C  L  L  A  F  L  V  V  G  V  S  F  S  S  P  I  L  Y  L  Y  L  T  F  L  R  M  I  Y  S  L  *  S  A  K  I  *  V  *  C  Q  E  I  R  D  V  K  F  H  *  L  L  I  Y  S  S  S  H  S  L  A  L  *  F  Y  F  V  M  H  P  S  L  G  V  S  K  R  K  M  A  F  F  S  P  F  K  M </second_frame>
            <third_frame>   S  L  S  L  F  *  G  F  *  E  S  I  S  I  E  L  R  K  K  L  N  N  Q  Y   : G  R  *  W  E  I  G  G  A  N  *  G  A  S  E  C  R  E  A  D  E  A  S  W  R  C  R  C  Y  *  K  S  S  Y  R  H  S  S  A  L  L  R  S  S  R  M  E  N  F  K  *  T  D  C  S  I  V  *  A  P  W  T  I  E  T   : G  C  T  G  H  G  P  T  G  H  A  I  H  *  P  D  A  R  S  *  H  Q  D  R  T  Y  Q  N  T  E  Q  C  V  C  W  K   : D  I  R  *  D  *  E  S  S  L  D  *  E  A  R  K  D  *  R  R  T  K  T  H  R  R  G  C  *  F  D  A  R  S  C   : C  *  N  L  W  S  D  G  K  N  *  K  D  S  L  Y  S  *  T   : S  S  S  M  L  R  S  *  R  L  C  S  C  S  N  S  L  E  K  D  Q  S  Q  S  V  *  S  *  S  I  *  R  K  E  E  S  K  G  G  *  K  C  G  *  G  T  C  C  R  Y  S  V  T  A  R  V  E  A  D  L  L  S  I  N  D  *  :  V  L  L  T  *  Q  *  L  P  *  N  M  S  L  L  Q  G  Y  I  *  D  P  F  R  E  R  R  P  S  T  V  D  T   : S  S  E  E  N  L  L  V  L  G  I  V  S  P  *  F  Y  A  I  K  S  S  *  L  N  F  G  G  Q  K  S  F  R  N  S  S  F  Q  :  A  A  S  E  A  I  D  Y  H  G  S  H  S  V  D  C  F  M  E  H  I  Q  G  *  V  *  K  *  E  E  Y  A  W  W  H  F  G  G  Q  G  C  *  R  P  Q  T  E  S  Y  *  A   : Q  H  P  C  R  L  K  I  L  L  K  N  N  L  E  E  A  G  C  F  T  V  P  R  Y  S   : G  S  G  E  A  P  I  *  N  G  C  I  K  S  F  G  C  *  N  R  Q  T  Y  G  Y  C  L  F  P  T  P  K  R  Q  Q  *  Y  L  E  F  L  G  V  *  F  G  E  A  A  *  P  C  R  K  E  L  P  P  D  P  Q  R  N  N  G  A  Q  S  C  F  K  G  L  E  D  F  D  R  T  T  L  L  V  G  A  K  P  S  L  T  S  I  I  A  I  P  V  W  T  F  I  V  T  K  L  K  S  F  L  Q  Y  S  L  F  *  E  T  S  N  K  S  K  N  S  Q  I  L  I  P  L  P  V  L  S  R  F  A  C  L  L  F  S  L  S  E  F  H  F  L  P  P  F  C  I  F  I  *  R  F  S  A  *  F  I  H  C  D  Q  Q  K  F  R  F  D  A  K  R  S  E  M  S  S  S  I  N  C  L  F  T  H  H  H  I  H  *  R  C  S  F  I  L  *  C  I  L  L  *  G  L  A  K  G  K  W  L  S  F  P  L  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37926" stop="37852"/>
                    <exon start="37768" stop="37574"/>
                    <exon start="35164" stop="35057"/>
                    <exon start="34973" stop="34869"/>
                    <exon start="34726" stop="34670"/>
                    <exon start="34548" stop="34352"/>
                    <exon start="33269" stop="33170"/>
                    <exon start="31703" stop="31591"/>
                    <exon start="30677" stop="30524"/>
                    <exon start="30414" stop="30337"/>
                    <exon start="29759" stop="29541"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1398</number_coding_nucleotides>
                  <number_encoded_amino_acids>466</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLSLSFRVSENRSQSNSEKNSIINMEGDGKLEAQIEVLLNVEKQMRQAGDVAATRKAAIDILQLCFEARAWKTLNEQIVLLSKRRGQLKQAVQAMVQQAMQYIDQTPDLDTKIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQKLIGEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDHKDYVRAQILSRKINPRVFEADPSKEKKKAKEGENVVEEPAADIPSLPELKQIYYQLMIRYYSHSNDYLEICRCYKAIYEIPSVKEDPAQWIPVLRKICWYLVLSPHDSMQSSLHNSTLEDKNLSEIPHFRLLLKQLITMEVIQWTALWNTFKDEFENEKNMPGGTLGDKAAEDLKLRVIEHNILVVSKYYSRITLKRLAVLLCLDIQEAEKHLSEMVVSKALVAKIDRPMGIVCFQPPKDSNDILNSWASNLEKLLDLVEKSCHQIHKETMVHKAALKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29530" stop="29261"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDNSTGRSQAEPHINYSNSGLDVHCDKVEILFAVLSILRNKQQEQKLANLDSSACTITICLLAFLVVGVSFSSPILYLYLTFLRMIYSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37926" e_stop="37852"/>
            <exon e_start="37768" e_stop="37574"/>
            <exon e_start="35164" e_stop="35057"/>
            <exon e_start="34973" e_stop="34869"/>
            <exon e_start="34726" e_stop="34670"/>
            <exon e_start="34548" e_stop="34352"/>
            <exon e_start="33269" e_stop="33170"/>
            <exon e_start="31703" e_stop="31591"/>
            <exon e_start="30677" e_stop="30524"/>
            <exon e_start="30414" e_stop="30337"/>
            <exon e_start="29759" e_stop="29208"/>
            <exon e_start="28522" e_stop="28507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.791" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37926" e_stop="37852" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37768" e_stop="37574" e_length="195"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35164" e_stop="35057" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.921">
            <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34973" e_stop="34869" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34726" e_stop="34670" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.904">
            <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34548" e_stop="34352" e_length="197"/>
          </exon>
          <intron i_serial="6" don_prob="0.873" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34351" i_stop="33270" i_length="1082"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="33269" e_stop="33170" e_length="100"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.791">
            <gDNA_intron_boundary i_start="33169" i_stop="31704" i_length="1466"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31703" e_stop="31591" e_length="113"/>
          </exon>
          <intron i_serial="8" don_prob="0.947" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31590" i_stop="30678" i_length="913"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="30677" e_stop="30524" e_length="154"/>
          </exon>
          <intron i_serial="9" don_prob="0.990" acc_prob="0.990">
            <gDNA_intron_boundary i_start="30523" i_stop="30415" i_length="109"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="30414" e_stop="30337" e_length="78"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30336" i_stop="29760" i_length="577"/>
          </intron>
          <exon e_serial="11" e_score="0.994">
            <gDNA_exon_boundary e_start="29759" e_stop="29208" e_length="552"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29207" i_stop="28523" i_length="685"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="28522" e_stop="28507" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37926" stop="37852"/>
              <exon start="37768" stop="37602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37923" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37923" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37920" stop="37852"/>
              <exon start="37768" stop="37663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37916" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37906" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37906" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37905" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37905" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37905" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37900" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37900" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37900" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37900" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37900" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37899" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
              <exon start="33269" stop="33204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37899" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
              <exon start="33269" stop="33248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37898" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37897" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37895" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37895" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37890" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37890" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37881" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37753" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37680" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
              <exon start="33269" stop="33234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37623" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
              <exon start="33269" stop="33170"/>
              <exon start="31703" stop="31634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35145" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
              <exon start="33269" stop="33245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35098" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
              <exon start="33269" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34966" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
              <exon start="33269" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34923" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
              <exon start="33269" stop="33244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34890" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
              <exon start="33269" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30337"/>
              <exon start="29759" stop="29600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34437" stop="34352"/>
              <exon start="33269" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30337"/>
              <exon start="29759" stop="29605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33262" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30337"/>
              <exon start="29759" stop="29734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33262" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294763" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33262" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33240" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30337"/>
              <exon start="29759" stop="29605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33240" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30337"/>
              <exon start="29759" stop="29612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33229" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30337"/>
              <exon start="29759" stop="29735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30368" stop="30337"/>
              <exon start="29759" stop="29234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373300" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29738" stop="29234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292243" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29738" stop="29239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430088" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29607" stop="29208"/>
              <exon start="28522" stop="28507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29596" stop="29208"/>
              <exon start="28522" stop="28507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29570" stop="29220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29507" stop="29208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309658" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCTCTCTCTCTCTTTTAGGGTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATG : GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG : GCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG : ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCT : GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA : GTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAG : GTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCA : GTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAG : GCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCAC : AACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAG : GAAGCGGAGAAGCACCTATCTGAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAAGAGATCAGAGATGTCAAGTTCCATTA : AAAAAAAAAAAAAAAA</gDNA_template>
            <first_frame> T  L  S  L  S  F  R  V  S  E  N  R  S  Q  S  N  S  E  K  N  S  I  I  N  M  :  E  G  D  G  K  L  E  A  Q  I  E  V  L  L  N  V  E  K  Q  M  R  Q  A  G  D  V  A  A  T  R  K  A  A  I  D  I  L  Q  L  C  F  E  A  R  A  W  K  T  L  N  E  Q  I  V  L  L  S  K  R  R  G  Q  L  K  Q  :  A  V  Q  A  M  V  Q  Q  A  M  Q  Y  I  D  Q  T  P  D  L  D  T  K  I  E  L  I  K  T  L  N  S  V  S  A  G  K  :  I  Y  V  E  I  E  R  A  R  L  I  K  K  L  A  K  I  K  E  E  Q  K  L  I  G  E  A  A  D  L  M  Q  E  V  A  :  V  E  T  F  G  A  M  A  K  T  E  K  I  A  F  I  L  E  Q  :  V  R  L  C  L  D  H  K  D  Y  V  R  A  Q  I  L  S  R  K  I  N  P  R  V  F  E  A  D  P  S  K  E  K  K  K  A  K  E  G  E  N  V  V  E  E  P  A  A  D  I  P  S  L  P  E  L  K  Q  I  Y  Y  Q  L  M  I  R :   Y  Y  S  H  S  N  D  Y  L  E  I  C  R  C  Y  K  A  I  Y  E  I  P  S  V  K  E  D  P  A  Q  W  I  P  :  V  L  R  K  I  C  W  Y  L  V  L  S  P  H  D  S  M  Q  S  S  L  H  N  S  T  L  E  D  K  N  L  S  E  I  P  H  F  R :   L  L  L  K  Q  L  I  T  M  E  V  I  Q  W  T  A  L  W  N  T  F  K  D  E  F  E  N  E  K  N  M  P  G  G  T  L  G  D  K  A  A  E  D  L  K  L  R  V  I  E  H  :  N  I  L  V  V  S  K  Y  Y  S  R  I  T  L  K  R  L  A  V  L  L  C  L  D  I  Q  :  E  A  E  K  H  L  S  E  M  V  V  S  K  A  L  V  A  K  I  D  R  P  M  G  I  V  C  F  Q  P  P  K  D  S  N  D  I  L  N  S  W  A  S  N  L  E  K  L  L  D  L  V  E  K  S  C  H  Q  I  H  K  E  T  M  V  H  K  A  A  L  K  A  *  K  T  L  I  G  Q  L  Y  W  *  E  P  S  R  A  S  H  Q  L  *  Q  F  R  S  G  R  S  L  *  Q  S  *  N  P  F  C  S  T  L  Y  S  E  K  Q  A  T  R  A  K  T  R  K  S  *  F  L  C  L  Y  Y  H  D  L  P  A  C  F  S  R  C  R  S  F  I  F  F  P  H  F  V  S  L  S  D  V  S  P  H  D  L  F  I  V  I  S  K  N  L  G  L  M  P  R  D  Q  R  C  Q  V  P  L  :  K  K  K  K  K  </first_frame>
            <second_frame>  L  S  L  S  L  L  G  F  L  R  I  D  L  N  R  T  P  K  K  T  Q  *  S  I  W :   K  V  M  G  N  W  R  R  K  L  R  C  F  *  M  *  R  S  R  *  G  K  L  A  M  S  L  L  L  E  K  Q  L  *  T  F  F  S  F  A  S  K  L  A  H  G  K  L  *  M  N  R  L  F  Y  C  L  S  A  V  D  N  *  N  R :   L  Y  R  P  W  S  N  R  P  C  N  T  L  T  R  R  P  I  L  T  P  R  *  N  L  S  K  H  *  T  V  C  L  L  E  R :   Y  T  L  R  L  R  E  L  A  *  L  R  S  S  Q  R  L  K  K  N  K  N  S  *  A  R  L  L  I  *  C  K  K  L  L :   L  K  P  L  E  R  W  Q  K  L  K  R  *  P  L  F  L  N  K :   F  V  Y  A  *  I  I  K  I  M  F  V  L  K  F  S  R  E  R  S  I  P  E  C  L  K  L  I  H  L  K  K  R  R  K  Q  R  R  V  K  M  W  L  R  N  L  L  Q  I  F  R  H  C  Q  S  *  S  R  S  T  I  N  *  *  L   : G  I  T  H  I  A  M  I  T  L  K  Y  V  A  V  T  R  L  Y  M  R  S  L  P  *  K  K  T  Q  H  S  G  Y  Q :   F  *  G  K  F  A  G  T  W  Y  C  L  P  M  I  L  C  N  Q  V  F  I  T  Q  L  W  R  T  K  I  F  Q  K  F  L  I  S   : G  C  F  *  S  N  *  L  P  W  K  S  F  S  G  L  L  Y  G  T  H  S  R  M  S  L  K  M  R  R  I  C  L  V  A  L  W  G  T  R  L  L  K  T  S  N  *  E  L  L  S  T :   T  S  L  S  S  Q  N  T  T  Q  E  *  P  *  R  G  W  L  F  Y  C  A  S  I  F  R :   K  R  R  S  T  Y  L  K  W  L  Y  Q  K  L  W  L  L  K  *  T  D  L  W  V  L  S  V  S  N  P  Q  K  T  A  M  I  S  *  I  L  G  R  L  I  W  R  S  C  L  T  L  S  K  R  V  A  T  R  S  T  K  K  Q  W  C  T  K  L  L  *  R  L  R  R  L  *  S  D  N  S  T  G  R  S  Q  A  E  P  H  I  N  Y  S  N  S  G  L  D  V  H  C  D  K  V  E  I  L  F  A  V  L  S  I  L  R  N  K  Q  Q  E  Q  K  L  A  N  L  D  S  S  A  C  T  I  T  I  C  L  L  A  F  L  V  V  G  V  S  F  S  S  P  I  L  Y  L  Y  L  T  F  L  R  M  I  Y  S  L  *  S  A  K  I  *  V  *  C  Q  E  I  R  D  V  K  F  H  * :   K  K  K  K  K </second_frame>
            <third_frame>   S  L  S  L  F  *  G  F  *  E  S  I  S  I  E  L  R  K  K  L  N  N  Q  Y   : G  R  *  W  E  I  G  G  A  N  *  G  A  S  E  C  R  E  A  D  E  A  S  W  R  C  R  C  Y  *  K  S  S  Y  R  H  S  S  A  L  L  R  S  S  R  M  E  N  F  K  *  T  D  C  S  I  V  *  A  P  W  T  I  E  T   : G  C  T  G  H  G  P  T  G  H  A  I  H  *  P  D  A  R  S  *  H  Q  D  R  T  Y  Q  N  T  E  Q  C  V  C  W  K   : D  I  R  *  D  *  E  S  S  L  D  *  E  A  R  K  D  *  R  R  T  K  T  H  R  R  G  C  *  F  D  A  R  S  C   : C  *  N  L  W  S  D  G  K  N  *  K  D  S  L  Y  S  *  T   : S  S  S  M  L  R  S  *  R  L  C  S  C  S  N  S  L  E  K  D  Q  S  Q  S  V  *  S  *  S  I  *  R  K  E  E  S  K  G  G  *  K  C  G  *  G  T  C  C  R  Y  S  V  T  A  R  V  E  A  D  L  L  S  I  N  D  *  :  V  L  L  T  *  Q  *  L  P  *  N  M  S  L  L  Q  G  Y  I  *  D  P  F  R  E  R  R  P  S  T  V  D  T   : S  S  E  E  N  L  L  V  L  G  I  V  S  P  *  F  Y  A  I  K  S  S  *  L  N  F  G  G  Q  K  S  F  R  N  S  S  F  Q  :  A  A  S  E  A  I  D  Y  H  G  S  H  S  V  D  C  F  M  E  H  I  Q  G  *  V  *  K  *  E  E  Y  A  W  W  H  F  G  G  Q  G  C  *  R  P  Q  T  E  S  Y  *  A   : Q  H  P  C  R  L  K  I  L  L  K  N  N  L  E  E  A  G  C  F  T  V  P  R  Y  S   : G  S  G  E  A  P  I  *  N  G  C  I  K  S  F  G  C  *  N  R  Q  T  Y  G  Y  C  L  F  P  T  P  K  R  Q  Q  *  Y  L  E  F  L  G  V  *  F  G  E  A  A  *  P  C  R  K  E  L  P  P  D  P  Q  R  N  N  G  A  Q  S  C  F  K  G  L  E  D  F  D  R  T  T  L  L  V  G  A  K  P  S  L  T  S  I  I  A  I  P  V  W  T  F  I  V  T  K  L  K  S  F  L  Q  Y  S  L  F  *  E  T  S  N  K  S  K  N  S  Q  I  L  I  P  L  P  V  L  S  R  F  A  C  L  L  F  S  L  S  E  F  H  F  L  P  P  F  C  I  F  I  *  R  F  S  A  *  F  I  H  C  D  Q  Q  K  F  R  F  D  A  K  R  S  E  M  S  S  S  I   : K  K  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37926" stop="37852"/>
                    <exon start="37768" stop="37574"/>
                    <exon start="35164" stop="35057"/>
                    <exon start="34973" stop="34869"/>
                    <exon start="34726" stop="34670"/>
                    <exon start="34548" stop="34352"/>
                    <exon start="33269" stop="33170"/>
                    <exon start="31703" stop="31591"/>
                    <exon start="30677" stop="30524"/>
                    <exon start="30414" stop="30337"/>
                    <exon start="29759" stop="29541"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1398</number_coding_nucleotides>
                  <number_encoded_amino_acids>466</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLSLSFRVSENRSQSNSEKNSIINMEGDGKLEAQIEVLLNVEKQMRQAGDVAATRKAAIDILQLCFEARAWKTLNEQIVLLSKRRGQLKQAVQAMVQQAMQYIDQTPDLDTKIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQKLIGEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDHKDYVRAQILSRKINPRVFEADPSKEKKKAKEGENVVEEPAADIPSLPELKQIYYQLMIRYYSHSNDYLEICRCYKAIYEIPSVKEDPAQWIPVLRKICWYLVLSPHDSMQSSLHNSTLEDKNLSEIPHFRLLLKQLITMEVIQWTALWNTFKDEFENEKNMPGGTLGDKAAEDLKLRVIEHNILVVSKYYSRITLKRLAVLLCLDIQEAEKHLSEMVVSKALVAKIDRPMGIVCFQPPKDSNDILNSWASNLEKLLDLVEKSCHQIHKETMVHKAALKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29530" stop="29261"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDNSTGRSQAEPHINYSNSGLDVHCDKVEILFAVLSILRNKQQEQKLANLDSSACTITICLLAFLVVGVSFSSPILYLYLTFLRMIYSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="37926" e_stop="37852"/>
            <exon e_start="37768" e_stop="37574"/>
            <exon e_start="35164" e_stop="35057"/>
            <exon e_start="34973" e_stop="34869"/>
            <exon e_start="34726" e_stop="34670"/>
            <exon e_start="34548" e_stop="34352"/>
            <exon e_start="33269" e_stop="33170"/>
            <exon e_start="31703" e_stop="31591"/>
            <exon e_start="30677" e_stop="30524"/>
            <exon e_start="30414" e_stop="30337"/>
            <exon e_start="29759" e_stop="29515"/>
            <exon e_start="29430" e_stop="29239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.791" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.963"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37926" e_stop="37852" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37768" e_stop="37574" e_length="195"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35164" e_stop="35057" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.921">
            <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34973" e_stop="34869" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34726" e_stop="34670" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.904">
            <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34548" e_stop="34352" e_length="197"/>
          </exon>
          <intron i_serial="6" don_prob="0.873" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34351" i_stop="33270" i_length="1082"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="33269" e_stop="33170" e_length="100"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.791">
            <gDNA_intron_boundary i_start="33169" i_stop="31704" i_length="1466"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31703" e_stop="31591" e_length="113"/>
          </exon>
          <intron i_serial="8" don_prob="0.947" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31590" i_stop="30678" i_length="913"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="30677" e_stop="30524" e_length="154"/>
          </exon>
          <intron i_serial="9" don_prob="0.990" acc_prob="0.990">
            <gDNA_intron_boundary i_start="30523" i_stop="30415" i_length="109"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="30414" e_stop="30337" e_length="78"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30336" i_stop="29760" i_length="577"/>
          </intron>
          <exon e_serial="11" e_score="0.963">
            <gDNA_exon_boundary e_start="29759" e_stop="29515" e_length="245"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29514" i_stop="29431" i_length="84"/>
          </intron>
          <exon e_serial="12" e_score="0.911">
            <gDNA_exon_boundary e_start="29430" e_stop="29239" e_length="192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37926" stop="37852"/>
              <exon start="37768" stop="37602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37923" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37923" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37920" stop="37852"/>
              <exon start="37768" stop="37663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37916" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37906" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37906" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37905" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37905" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37905" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37900" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37900" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37900" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37900" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37900" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37899" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
              <exon start="33269" stop="33204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37899" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
              <exon start="33269" stop="33248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37898" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37897" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37895" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37895" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37890" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37890" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37881" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37753" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37680" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
              <exon start="33269" stop="33234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37623" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
              <exon start="33269" stop="33170"/>
              <exon start="31703" stop="31634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35145" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
              <exon start="33269" stop="33245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35098" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
              <exon start="33269" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34966" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
              <exon start="33269" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34923" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
              <exon start="33269" stop="33244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34890" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34352"/>
              <exon start="33269" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30337"/>
              <exon start="29759" stop="29600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34437" stop="34352"/>
              <exon start="33269" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30337"/>
              <exon start="29759" stop="29605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33262" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30337"/>
              <exon start="29759" stop="29734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33262" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294763" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33262" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33240" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30337"/>
              <exon start="29759" stop="29605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33240" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30337"/>
              <exon start="29759" stop="29612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33229" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30337"/>
              <exon start="29759" stop="29735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30337"/>
              <exon start="29759" stop="29515"/>
              <exon start="29430" stop="29248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30412" stop="30337"/>
              <exon start="29759" stop="29515"/>
              <exon start="29430" stop="29239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434365" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCTCTCTCTCTCTTTTAGGGTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATG : GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG : GCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG : ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCT : GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA : GTTCGTCTATGCTTAGATCATAAAGATTATGTTCGTGCTCAAATTCTCTCGAGAAAGATCAATCCCAGAGTGTTTGAAGCTGATCCATCTAAAGAAAAGAAGAAAGCAAAGGAGGGTGAAAATGTGGTTGAGGAACCTGCTGCAGATATTCCGTCACTGCCAGAGTTGAAGCAGATCTACTATCAATTAATGATTAG : GTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCA : GTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAG : GCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCAC : AACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAG : GAAGCGGAGAAGCACCTATCTGAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTG : TACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGAT</gDNA_template>
            <first_frame> T  L  S  L  S  F  R  V  S  E  N  R  S  Q  S  N  S  E  K  N  S  I  I  N  M  :  E  G  D  G  K  L  E  A  Q  I  E  V  L  L  N  V  E  K  Q  M  R  Q  A  G  D  V  A  A  T  R  K  A  A  I  D  I  L  Q  L  C  F  E  A  R  A  W  K  T  L  N  E  Q  I  V  L  L  S  K  R  R  G  Q  L  K  Q  :  A  V  Q  A  M  V  Q  Q  A  M  Q  Y  I  D  Q  T  P  D  L  D  T  K  I  E  L  I  K  T  L  N  S  V  S  A  G  K  :  I  Y  V  E  I  E  R  A  R  L  I  K  K  L  A  K  I  K  E  E  Q  K  L  I  G  E  A  A  D  L  M  Q  E  V  A  :  V  E  T  F  G  A  M  A  K  T  E  K  I  A  F  I  L  E  Q  :  V  R  L  C  L  D  H  K  D  Y  V  R  A  Q  I  L  S  R  K  I  N  P  R  V  F  E  A  D  P  S  K  E  K  K  K  A  K  E  G  E  N  V  V  E  E  P  A  A  D  I  P  S  L  P  E  L  K  Q  I  Y  Y  Q  L  M  I  R :   Y  Y  S  H  S  N  D  Y  L  E  I  C  R  C  Y  K  A  I  Y  E  I  P  S  V  K  E  D  P  A  Q  W  I  P  :  V  L  R  K  I  C  W  Y  L  V  L  S  P  H  D  S  M  Q  S  S  L  H  N  S  T  L  E  D  K  N  L  S  E  I  P  H  F  R :   L  L  L  K  Q  L  I  T  M  E  V  I  Q  W  T  A  L  W  N  T  F  K  D  E  F  E  N  E  K  N  M  P  G  G  T  L  G  D  K  A  A  E  D  L  K  L  R  V  I  E  H  :  N  I  L  V  V  S  K  Y  Y  S  R  I  T  L  K  R  L  A  V  L  L  C  L  D  I  Q  :  E  A  E  K  H  L  S  E  M  V  V  S  K  A  L  V  A  K  I  D  R  P  M  G  I  V  C  F  Q  P  P  K  D  S  N  D  I  L  N  S  W  A  S  N  L  E  K  L  L  D  L  V  E  K  S  C  H  Q  I  H  K  E  T  M  V  H  K  A  A  L  K  A  *  K  T  L  I  G  Q  L  Y  C :   T  L  Y  S  E  K  Q  A  T  R  A  K  T  R  K  S  *  F  L  C  L  Y  Y  H  D  L  P  A  C  F  S  R  C  R  S  F  I  F  F  P  H  F  V  S  L  S  D  V  S  P  H  D  L  F  I  V  I  S  K  N  L  G  L   </first_frame>
            <second_frame>  L  S  L  S  L  L  G  F  L  R  I  D  L  N  R  T  P  K  K  T  Q  *  S  I  W :   K  V  M  G  N  W  R  R  K  L  R  C  F  *  M  *  R  S  R  *  G  K  L  A  M  S  L  L  L  E  K  Q  L  *  T  F  F  S  F  A  S  K  L  A  H  G  K  L  *  M  N  R  L  F  Y  C  L  S  A  V  D  N  *  N  R :   L  Y  R  P  W  S  N  R  P  C  N  T  L  T  R  R  P  I  L  T  P  R  *  N  L  S  K  H  *  T  V  C  L  L  E  R :   Y  T  L  R  L  R  E  L  A  *  L  R  S  S  Q  R  L  K  K  N  K  N  S  *  A  R  L  L  I  *  C  K  K  L  L :   L  K  P  L  E  R  W  Q  K  L  K  R  *  P  L  F  L  N  K :   F  V  Y  A  *  I  I  K  I  M  F  V  L  K  F  S  R  E  R  S  I  P  E  C  L  K  L  I  H  L  K  K  R  R  K  Q  R  R  V  K  M  W  L  R  N  L  L  Q  I  F  R  H  C  Q  S  *  S  R  S  T  I  N  *  *  L   : G  I  T  H  I  A  M  I  T  L  K  Y  V  A  V  T  R  L  Y  M  R  S  L  P  *  K  K  T  Q  H  S  G  Y  Q :   F  *  G  K  F  A  G  T  W  Y  C  L  P  M  I  L  C  N  Q  V  F  I  T  Q  L  W  R  T  K  I  F  Q  K  F  L  I  S   : G  C  F  *  S  N  *  L  P  W  K  S  F  S  G  L  L  Y  G  T  H  S  R  M  S  L  K  M  R  R  I  C  L  V  A  L  W  G  T  R  L  L  K  T  S  N  *  E  L  L  S  T :   T  S  L  S  S  Q  N  T  T  Q  E  *  P  *  R  G  W  L  F  Y  C  A  S  I  F  R :   K  R  R  S  T  Y  L  K  W  L  Y  Q  K  L  W  L  L  K  *  T  D  L  W  V  L  S  V  S  N  P  Q  K  T  A  M  I  S  *  I  L  G  R  L  I  W  R  S  C  L  T  L  S  K  R  V  A  T  R  S  T  K  K  Q  W  C  T  K  L  L  *  R  L  R  R  L  *  S  D  N  S  T   : V  L  S  I  L  R  N  K  Q  Q  E  Q  K  L  A  N  L  D  S  S  A  C  T  I  T  I  C  L  L  A  F  L  V  V  G  V  S  F  S  S  P  I  L  Y  L  Y  L  T  F  L  R  M  I  Y  S  L  *  S  A  K  I  *  V  *  </second_frame>
            <third_frame>   S  L  S  L  F  *  G  F  *  E  S  I  S  I  E  L  R  K  K  L  N  N  Q  Y   : G  R  *  W  E  I  G  G  A  N  *  G  A  S  E  C  R  E  A  D  E  A  S  W  R  C  R  C  Y  *  K  S  S  Y  R  H  S  S  A  L  L  R  S  S  R  M  E  N  F  K  *  T  D  C  S  I  V  *  A  P  W  T  I  E  T   : G  C  T  G  H  G  P  T  G  H  A  I  H  *  P  D  A  R  S  *  H  Q  D  R  T  Y  Q  N  T  E  Q  C  V  C  W  K   : D  I  R  *  D  *  E  S  S  L  D  *  E  A  R  K  D  *  R  R  T  K  T  H  R  R  G  C  *  F  D  A  R  S  C   : C  *  N  L  W  S  D  G  K  N  *  K  D  S  L  Y  S  *  T   : S  S  S  M  L  R  S  *  R  L  C  S  C  S  N  S  L  E  K  D  Q  S  Q  S  V  *  S  *  S  I  *  R  K  E  E  S  K  G  G  *  K  C  G  *  G  T  C  C  R  Y  S  V  T  A  R  V  E  A  D  L  L  S  I  N  D  *  :  V  L  L  T  *  Q  *  L  P  *  N  M  S  L  L  Q  G  Y  I  *  D  P  F  R  E  R  R  P  S  T  V  D  T   : S  S  E  E  N  L  L  V  L  G  I  V  S  P  *  F  Y  A  I  K  S  S  *  L  N  F  G  G  Q  K  S  F  R  N  S  S  F  Q  :  A  A  S  E  A  I  D  Y  H  G  S  H  S  V  D  C  F  M  E  H  I  Q  G  *  V  *  K  *  E  E  Y  A  W  W  H  F  G  G  Q  G  C  *  R  P  Q  T  E  S  Y  *  A   : Q  H  P  C  R  L  K  I  L  L  K  N  N  L  E  E  A  G  C  F  T  V  P  R  Y  S   : G  S  G  E  A  P  I  *  N  G  C  I  K  S  F  G  C  *  N  R  Q  T  Y  G  Y  C  L  F  P  T  P  K  R  Q  Q  *  Y  L  E  F  L  G  V  *  F  G  E  A  A  *  P  C  R  K  E  L  P  P  D  P  Q  R  N  N  G  A  Q  S  C  F  K  G  L  E  D  F  D  R  T  T  L  L  :  Y  S  L  F  *  E  T  S  N  K  S  K  N  S  Q  I  L  I  P  L  P  V  L  S  R  F  A  C  L  L  F  S  L  S  E  F  H  F  L  P  P  F  C  I  F  I  *  R  F  S  A  *  F  I  H  C  D  Q  Q  K  F  R  F  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37926" stop="37852"/>
                    <exon start="37768" stop="37574"/>
                    <exon start="35164" stop="35057"/>
                    <exon start="34973" stop="34869"/>
                    <exon start="34726" stop="34670"/>
                    <exon start="34548" stop="34352"/>
                    <exon start="33269" stop="33170"/>
                    <exon start="31703" stop="31591"/>
                    <exon start="30677" stop="30524"/>
                    <exon start="30414" stop="30337"/>
                    <exon start="29759" stop="29541"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1398</number_coding_nucleotides>
                  <number_encoded_amino_acids>466</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLSLSFRVSENRSQSNSEKNSIINMEGDGKLEAQIEVLLNVEKQMRQAGDVAATRKAAIDILQLCFEARAWKTLNEQIVLLSKRRGQLKQAVQAMVQQAMQYIDQTPDLDTKIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQKLIGEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDHKDYVRAQILSRKINPRVFEADPSKEKKKAKEGENVVEEPAADIPSLPELKQIYYQLMIRYYSHSNDYLEICRCYKAIYEIPSVKEDPAQWIPVLRKICWYLVLSPHDSMQSSLHNSTLEDKNLSEIPHFRLLLKQLITMEVIQWTALWNTFKDEFENEKNMPGGTLGDKAAEDLKLRVIEHNILVVSKYYSRITLKRLAVLLCLDIQEAEKHLSEMVVSKALVAKIDRPMGIVCFQPPKDSNDILNSWASNLEKLLDLVEKSCHQIHKETMVHKAALKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="37926" e_stop="37852"/>
            <exon e_start="37768" e_stop="37574"/>
            <exon e_start="35164" e_stop="35057"/>
            <exon e_start="34973" e_stop="34869"/>
            <exon e_start="34726" e_stop="34670"/>
            <exon e_start="34548" e_stop="34537"/>
            <exon e_start="29579" e_stop="29208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37926" e_stop="37852" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37851" i_stop="37769" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37768" e_stop="37574" e_length="195"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37573" i_stop="35165" i_length="2409"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35164" e_stop="35057" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.921">
            <gDNA_intron_boundary i_start="35056" i_stop="34974" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34973" e_stop="34869" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34868" i_stop="34727" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34726" e_stop="34670" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.904">
            <gDNA_intron_boundary i_start="34669" i_stop="34549" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34548" e_stop="34537" e_length="12"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34536" i_stop="29580" i_length="4957"/>
          </intron>
          <exon e_serial="7" e_score="0.969">
            <gDNA_exon_boundary e_start="29579" e_stop="29208" e_length="372"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37926" stop="37852"/>
              <exon start="37768" stop="37602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37923" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37923" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37920" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34670"/>
              <exon start="34548" stop="34537"/>
              <exon start="29579" stop="29417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37920" stop="37852"/>
              <exon start="37768" stop="37663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37906" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37900" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37898" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37897" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37895" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37890" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34869"/>
              <exon start="34726" stop="34693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37881" stop="37852"/>
              <exon start="37768" stop="37574"/>
              <exon start="35164" stop="35057"/>
              <exon start="34973" stop="34940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29570" stop="29220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29507" stop="29208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309658" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCTCTCTCTCTCTTTTAGGGTTTCTGAGAATCGATCTCAATCGAACTCCGAAAAAAACTCAATAATCAATATG : GAAGGTGATGGGAAATTGGAGGCGCAAATTGAGGTGCTTCTGAATGTAGAGAAGCAGATGAGGCAAGCTGGCGATGTCGCTGCTACTAGAAAAGCAGCTATAGACATTCTTCAGCTTTGCTTCGAAGCTCGCGCATGGAAAACTTTAAATGAACAGATTGTTCTATTGTCTAAGCGCCGTGGACAATTGAAACAG : GCTGTACAGGCCATGGTCCAACAGGCCATGCAATACATTGACCAGACGCCCGATCTTGACACCAAGATAGAACTTATCAAAACACTGAACAGTGTGTCTGCTGGAAAG : ATATACGTTGAGATTGAGAGAGCTCGCTTGATTAAGAAGCTCGCAAAGATTAAAGAAGAACAAAAACTCATAGGCGAGGCTGCTGATTTGATGCAAGAAGTTGCT : GTTGAAACCTTTGGAGCGATGGCAAAAACTGAAAAGATAGCCTTTATTCTTGAACAA : GTTCGTCTATGC : AAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAAGAGATCAGAGATGTCAAGTTCCATTA</gDNA_template>
            <first_frame> T  L  S  L  S  F  R  V  S  E  N  R  S  Q  S  N  S  E  K  N  S  I  I  N  M  :  E  G  D  G  K  L  E  A  Q  I  E  V  L  L  N  V  E  K  Q  M  R  Q  A  G  D  V  A  A  T  R  K  A  A  I  D  I  L  Q  L  C  F  E  A  R  A  W  K  T  L  N  E  Q  I  V  L  L  S  K  R  R  G  Q  L  K  Q  :  A  V  Q  A  M  V  Q  Q  A  M  Q  Y  I  D  Q  T  P  D  L  D  T  K  I  E  L  I  K  T  L  N  S  V  S  A  G  K  :  I  Y  V  E  I  E  R  A  R  L  I  K  K  L  A  K  I  K  E  E  Q  K  L  I  G  E  A  A  D  L  M  Q  E  V  A  :  V  E  T  F  G  A  M  A  K  T  E  K  I  A  F  I  L  E  Q  :  V  R  L  C  :  K  E  T  M  V  H  K  A  A  L  K  A  *  K  T  L  I  G  Q  L  Y  W  *  E  P  S  R  A  S  H  Q  L  *  Q  F  R  S  G  R  S  L  *  Q  S  *  N  P  F  C  S  T  L  Y  S  E  K  Q  A  T  R  A  K  T  R  K  S  *  F  L  C  L  Y  Y  H  D  L  P  A  C  F  S  R  C  R  S  F  I  F  F  P  H  F  V  S  L  S  D  V  S  P  H  D  L  F  I  V  I  S  K  N  L  G  L  M  P  R  D  Q  R  C  Q  V  P  L </first_frame>
            <second_frame>  L  S  L  S  L  L  G  F  L  R  I  D  L  N  R  T  P  K  K  T  Q  *  S  I  W :   K  V  M  G  N  W  R  R  K  L  R  C  F  *  M  *  R  S  R  *  G  K  L  A  M  S  L  L  L  E  K  Q  L  *  T  F  F  S  F  A  S  K  L  A  H  G  K  L  *  M  N  R  L  F  Y  C  L  S  A  V  D  N  *  N  R :   L  Y  R  P  W  S  N  R  P  C  N  T  L  T  R  R  P  I  L  T  P  R  *  N  L  S  K  H  *  T  V  C  L  L  E  R :   Y  T  L  R  L  R  E  L  A  *  L  R  S  S  Q  R  L  K  K  N  K  N  S  *  A  R  L  L  I  *  C  K  K  L  L :   L  K  P  L  E  R  W  Q  K  L  K  R  *  P  L  F  L  N  K :   F  V  Y  A :   K  K  Q  W  C  T  K  L  L  *  R  L  R  R  L  *  S  D  N  S  T  G  R  S  Q  A  E  P  H  I  N  Y  S  N  S  G  L  D  V  H  C  D  K  V  E  I  L  F  A  V  L  S  I  L  R  N  K  Q  Q  E  Q  K  L  A  N  L  D  S  S  A  C  T  I  T  I  C  L  L  A  F  L  V  V  G  V  S  F  S  S  P  I  L  Y  L  Y  L  T  F  L  R  M  I  Y  S  L  *  S  A  K  I  *  V  *  C  Q  E  I  R  D  V  K  F  H   </second_frame>
            <third_frame>   S  L  S  L  F  *  G  F  *  E  S  I  S  I  E  L  R  K  K  L  N  N  Q  Y   : G  R  *  W  E  I  G  G  A  N  *  G  A  S  E  C  R  E  A  D  E  A  S  W  R  C  R  C  Y  *  K  S  S  Y  R  H  S  S  A  L  L  R  S  S  R  M  E  N  F  K  *  T  D  C  S  I  V  *  A  P  W  T  I  E  T   : G  C  T  G  H  G  P  T  G  H  A  I  H  *  P  D  A  R  S  *  H  Q  D  R  T  Y  Q  N  T  E  Q  C  V  C  W  K   : D  I  R  *  D  *  E  S  S  L  D  *  E  A  R  K  D  *  R  R  T  K  T  H  R  R  G  C  *  F  D  A  R  S  C   : C  *  N  L  W  S  D  G  K  N  *  K  D  S  L  Y  S  *  T   : S  S  S  M   : Q  R  N  N  G  A  Q  S  C  F  K  G  L  E  D  F  D  R  T  T  L  L  V  G  A  K  P  S  L  T  S  I  I  A  I  P  V  W  T  F  I  V  T  K  L  K  S  F  L  Q  Y  S  L  F  *  E  T  S  N  K  S  K  N  S  Q  I  L  I  P  L  P  V  L  S  R  F  A  C  L  L  F  S  L  S  E  F  H  F  L  P  P  F  C  I  F  I  *  R  F  S  A  *  F  I  H  C  D  Q  Q  K  F  R  F  D  A  K  R  S  E  M  S  S  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37926" stop="37852"/>
                    <exon start="37768" stop="37574"/>
                    <exon start="35164" stop="35057"/>
                    <exon start="34973" stop="34869"/>
                    <exon start="34726" stop="34670"/>
                    <exon start="34548" stop="34537"/>
                    <exon start="29579" stop="29541"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLSLSFRVSENRSQSNSEKNSIINMEGDGKLEAQIEVLLNVEKQMRQAGDVAATRKAAIDILQLCFEARAWKTLNEQIVLLSKRRGQLKQAVQAMVQQAMQYIDQTPDLDTKIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQKLIGEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCKETMVHKAALKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29530" stop="29261"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDNSTGRSQAEPHINYSNSGLDVHCDKVEILFAVLSILRNKQQEQKLANLDSSACTITICLLAFLVVGVSFSSPILYLYLTFLRMIYSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="33524" e_stop="33170"/>
            <exon e_start="31703" e_stop="31591"/>
            <exon e_start="30677" e_stop="30524"/>
            <exon e_start="30414" e_stop="30337"/>
            <exon e_start="29759" e_stop="29096"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.791" e_score="0.901"/>
          <exon-intron don_prob="0.947" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="33524" e_stop="33170" e_length="355"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.791">
            <gDNA_intron_boundary i_start="33169" i_stop="31704" i_length="1466"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31703" e_stop="31591" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.947" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31590" i_stop="30678" i_length="913"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30677" e_stop="30524" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.990">
            <gDNA_intron_boundary i_start="30523" i_stop="30415" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30414" e_stop="30337" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30336" i_stop="29760" i_length="577"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29759" e_stop="29096" e_length="664"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33524" stop="33170"/>
              <exon start="31703" stop="31593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33262" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30337"/>
              <exon start="29759" stop="29734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33262" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294763" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33262" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33240" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30337"/>
              <exon start="29759" stop="29605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33240" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30337"/>
              <exon start="29759" stop="29612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33229" stop="33170"/>
              <exon start="31703" stop="31591"/>
              <exon start="30677" stop="30524"/>
              <exon start="30414" stop="30337"/>
              <exon start="29759" stop="29735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30368" stop="30337"/>
              <exon start="29759" stop="29234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373300" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29739" stop="29138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29738" stop="29234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292243" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29738" stop="29239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430088" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29737" stop="29096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29570" stop="29220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29507" stop="29208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309658" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCTATCAAATGTAAATGAAAGTTATTTTATTTATCATAGAATAGTTTTTGCCATGTCTCCAAATTTTTTAGGTTGGAGTGACCTTGCATGATTTTCTTAATTGTTGATTTAGCAGGTCAGCAATCCTAAGGCATGAGATTCTTACTTATTTAGAGTGATATAGCTCTAGATGAATGAATGATTTCATTTGGAGATCGTTTTTTGCATTTGTGTATCTTAAACTGGTGTGTCATTCTTTCTACTTCTGTTGCAGGTATTACTCACATAGCAATGATTACCTTGAAATATGTCGCTGTTACAAGGCTATATATGAGATCCCTTCCGTGAAAGAAGACCCAGCACAGTGGATACCA : GTTCTGAGGAAAATTTGCTGGTACTTGGTATTGTCTCCCCATGATTCTATGCAATCAAGTCTTCATAACTCAACTTTGGAGGACAAAAATCTTTCAGAAATTCCTCATTTCAG : GCTGCTTCTGAAGCAATTGATTACCATGGAAGTCATTCAGTGGACTGCTTTATGGAACACATTCAAGGATGAGTTTGAAAATGAGAAGAATATGCCTGGTGGCACTTTGGGGGACAAGGCTGCTGAAGACCTCAAACTGAGAGTTATTGAGCAC : AACATCCTTGTCGTCTCAAAATACTACTCAAGAATAACCTTGAAGAGGCTGGCTGTTTTACTGTGCCTCGATATTCAG : GAAGCGGAGAAGCACCTATCTGAAATGGTTGTATCAAAAGCTTTGGTTGCTAAAATAGACAGACCTATGGGTATTGTCTGTTTCCAACCCCCAAAAGACAGCAATGATATCTTGAATTCTTGGGCGTCTAATTTGGAGAAGCTGCTTGACCTTGTCGAAAAGAGTTGCCACCAGATCCACAAAGAAACAATGGTGCACAAAGCTGCTTTAAAGGCTTAGAAGACTTTGATCGGACAACTCTACTGGTAGGAGCCAAGCCGAGCCTCACATCAATTATAGCAATTCCGGTCTGGACGTTCATTGTGACAAAGTTGAAATCCTTTTTGCAGTACTCTCTATTCTGAGAAACAAGCAACAAGAGCAAAAACTCGCAAATCTTGATTCCTCTGCCTGTACTATCACGATTTGCCTGCTTGCTTTTCTCGTTGTCGGAGTTTCATTTTCTTCCCCCATTTTGTATCTTTATCTGACGTTTCTCCGCATGATTTATTCATTGTGATCAGCAAAAATTTAGGTTTGATGCCAAGAGATCAGAGATGTCAAGTTCCATTAATTGCTTATTTACTCATCATCACATTCATTAGCGCTGTAGTTTTATTTTGTAATGCATCCTTCTTTAGGGGTTAGCAAAAGGAAAATGGCTTTCTTTTCCCCTTTTAAAATG</gDNA_template>
            <first_frame> H  L  S  N  V  N  E  S  Y  F  I  Y  H  R  I  V  F  A  M  S  P  N  F  L  G  W  S  D  L  A  *  F  S  *  L  L  I  *  Q  V  S  N  P  K  A  *  D  S  Y  L  F  R  V  I  *  L  *  M  N  E  *  F  H  L  E  I  V  F  C  I  C  V  S  *  T  G  V  S  F  F  L  L  L  L  Q  V  L  L  T  *  Q  *  L  P  *  N  M  S  L  L  Q  G  Y  I  *  D  P  F  R  E  R  R  P  S  T  V  D  T   : S  S  E  E  N  L  L  V  L  G  I  V  S  P  *  F  Y  A  I  K  S  S  *  L  N  F  G  G  Q  K  S  F  R  N  S  S  F  Q  :  A  A  S  E  A  I  D  Y  H  G  S  H  S  V  D  C  F  M  E  H  I  Q  G  *  V  *  K  *  E  E  Y  A  W  W  H  F  G  G  Q  G  C  *  R  P  Q  T  E  S  Y  *  A   : Q  H  P  C  R  L  K  I  L  L  K  N  N  L  E  E  A  G  C  F  T  V  P  R  Y  S   : G  S  G  E  A  P  I  *  N  G  C  I  K  S  F  G  C  *  N  R  Q  T  Y  G  Y  C  L  F  P  T  P  K  R  Q  Q  *  Y  L  E  F  L  G  V  *  F  G  E  A  A  *  P  C  R  K  E  L  P  P  D  P  Q  R  N  N  G  A  Q  S  C  F  K  G  L  E  D  F  D  R  T  T  L  L  V  G  A  K  P  S  L  T  S  I  I  A  I  P  V  W  T  F  I  V  T  K  L  K  S  F  L  Q  Y  S  L  F  *  E  T  S  N  K  S  K  N  S  Q  I  L  I  P  L  P  V  L  S  R  F  A  C  L  L  F  S  L  S  E  F  H  F  L  P  P  F  C  I  F  I  *  R  F  S  A  *  F  I  H  C  D  Q  Q  K  F  R  F  D  A  K  R  S  E  M  S  S  S  I  N  C  L  F  T  H  H  H  I  H  *  R  C  S  F  I  L  *  C  I  L  L  *  G  L  A  K  G  K  W  L  S  F  P  L  L  K   </first_frame>
            <second_frame>  T  Y  Q  M  *  M  K  V  I  L  F  I  I  E  *  F  L  P  C  L  Q  I  F  *  V  G  V  T  L  H  D  F  L  N  C  *  F  S  R  S  A  I  L  R  H  E  I  L  T  Y  L  E  *  Y  S  S  R  *  M  N  D  F  I  W  R  S  F  F  A  F  V  Y  L  K  L  V  C  H  S  F  Y  F  C  C  R  Y  Y  S  H  S  N  D  Y  L  E  I  C  R  C  Y  K  A  I  Y  E  I  P  S  V  K  E  D  P  A  Q  W  I  P  :  V  L  R  K  I  C  W  Y  L  V  L  S  P  H  D  S  M  Q  S  S  L  H  N  S  T  L  E  D  K  N  L  S  E  I  P  H  F  R :   L  L  L  K  Q  L  I  T  M  E  V  I  Q  W  T  A  L  W  N  T  F  K  D  E  F  E  N  E  K  N  M  P  G  G  T  L  G  D  K  A  A  E  D  L  K  L  R  V  I  E  H  :  N  I  L  V  V  S  K  Y  Y  S  R  I  T  L  K  R  L  A  V  L  L  C  L  D  I  Q  :  E  A  E  K  H  L  S  E  M  V  V  S  K  A  L  V  A  K  I  D  R  P  M  G  I  V  C  F  Q  P  P  K  D  S  N  D  I  L  N  S  W  A  S  N  L  E  K  L  L  D  L  V  E  K  S  C  H  Q  I  H  K  E  T  M  V  H  K  A  A  L  K  A  *  K  T  L  I  G  Q  L  Y  W  *  E  P  S  R  A  S  H  Q  L  *  Q  F  R  S  G  R  S  L  *  Q  S  *  N  P  F  C  S  T  L  Y  S  E  K  Q  A  T  R  A  K  T  R  K  S  *  F  L  C  L  Y  Y  H  D  L  P  A  C  F  S  R  C  R  S  F  I  F  F  P  H  F  V  S  L  S  D  V  S  P  H  D  L  F  I  V  I  S  K  N  L  G  L  M  P  R  D  Q  R  C  Q  V  P  L  I  A  Y  L  L  I  I  T  F  I  S  A  V  V  L  F  C  N  A  S  F  F  R  G  *  Q  K  E  N  G  F  L  F  P  F  *  N  </second_frame>
            <third_frame>   P  I  K  C  K  *  K  L  F  Y  L  S  *  N  S  F  C  H  V  S  K  F  F  R  L  E  *  P  C  M  I  F  L  I  V  D  L  A  G  Q  Q  S  *  G  M  R  F  L  L  I  *  S  D  I  A  L  D  E  *  M  I  S  F  G  D  R  F  L  H  L  C  I  L  N  W  C  V  I  L  S  T  S  V  A  G  I  T  H  I  A  M  I  T  L  K  Y  V  A  V  T  R  L  Y  M  R  S  L  P  *  K  K  T  Q  H  S  G  Y  Q :   F  *  G  K  F  A  G  T  W  Y  C  L  P  M  I  L  C  N  Q  V  F  I  T  Q  L  W  R  T  K  I  F  Q  K  F  L  I  S   : G  C  F  *  S  N  *  L  P  W  K  S  F  S  G  L  L  Y  G  T  H  S  R  M  S  L  K  M  R  R  I  C  L  V  A  L  W  G  T  R  L  L  K  T  S  N  *  E  L  L  S  T :   T  S  L  S  S  Q  N  T  T  Q  E  *  P  *  R  G  W  L  F  Y  C  A  S  I  F  R :   K  R  R  S  T  Y  L  K  W  L  Y  Q  K  L  W  L  L  K  *  T  D  L  W  V  L  S  V  S  N  P  Q  K  T  A  M  I  S  *  I  L  G  R  L  I  W  R  S  C  L  T  L  S  K  R  V  A  T  R  S  T  K  K  Q  W  C  T  K  L  L  *  R  L  R  R  L  *  S  D  N  S  T  G  R  S  Q  A  E  P  H  I  N  Y  S  N  S  G  L  D  V  H  C  D  K  V  E  I  L  F  A  V  L  S  I  L  R  N  K  Q  Q  E  Q  K  L  A  N  L  D  S  S  A  C  T  I  T  I  C  L  L  A  F  L  V  V  G  V  S  F  S  S  P  I  L  Y  L  Y  L  T  F  L  R  M  I  Y  S  L  *  S  A  K  I  *  V  *  C  Q  E  I  R  D  V  K  F  H  *  L  L  I  Y  S  S  S  H  S  L  A  L  *  F  Y  F  V  M  H  P  S  L  G  V  S  K  R  K  M  A  F  F  S  P  F  K  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33349" stop="33170"/>
                    <exon start="31703" stop="31591"/>
                    <exon start="30677" stop="30524"/>
                    <exon start="30414" stop="30337"/>
                    <exon start="29759" stop="29541"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MNDFIWRSFFAFVYLKLVCHSFYFCCRYYSHSNDYLEICRCYKAIYEIPSVKEDPAQWIPVLRKICWYLVLSPHDSMQSSLHNSTLEDKNLSEIPHFRLLLKQLITMEVIQWTALWNTFKDEFENEKNMPGGTLGDKAAEDLKLRVIEHNILVVSKYYSRITLKRLAVLLCLDIQEAEKHLSEMVVSKALVAKIDRPMGIVCFQPPKDSNDILNSWASNLEKLLDLVEKSCHQIHKETMVHKAALKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29530" stop="29261"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDNSTGRSQAEPHINYSNSGLDVHCDKVEILFAVLSILRNKQQEQKLANLDSSACTITICLLAFLVVGVSFSSPILYLYLTFLRMIYSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="48264" PGL_stop="48919"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48264" e_stop="48919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="48264" e_stop="48919" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48264" stop="48919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGATCAACCAGGTTCTTACTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTTCGGGAGTACAACATGCAACTGCTGTGGCTCCCTGCATGGATGCCTCATTGGAAGTAGGCACGTTTCCTCGATTGACTACAGGGTCTATAATGACGGGTAATCAGCATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTTAGGATGCCTATGATTTTCTAATTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATTCAGTGTTGAGTTTGTGACATATCAGTTTCAGTGGAATGCCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGACATCATTCTCTAGCTTATTTATGGAAAAGTATATACCCCGGACTTTGAGGGATAGGAGGAGAGATGAGTTCTTAAGCCTAGAGCAAGGAAGGATGTCTGTTGCTGCTTATGAGGCCAAATTTCGTGCGCTATCCAGGTATGCCACTTAGCTTTGCTTCAGTCCACAAGAGCAGATTCGCCACTTTGTGAAAGGATTGAGGTCAGATTTGTAGGTCCCAGCCTTACAGGTAGCT</gDNA_template>
            <first_frame> R  *  S  T  R  F  L  L  I  L  A  G  Y  L  I  R  A  R  H  L  Q  C  F  L  Y  Q  H  L  R  F  R  E  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  D  *  L  Q  G  L  *  *  R  V  I  S  M  N  F  S  L  N  S  *  S  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  *  L  I  V  M  S  C  Y  I  R  W  T  *  *  N  D  S  V  L  S  L  *  H  I  S  F  S  G  M  P  K  C  G  G  G  R  M  L  S  V  N  Q  H  R  H  H  L  *  L  G  H  H  S  L  A  Y  L  W  K  S  I  Y  P  G  L  *  G  I  G  G  E  M  S  S  *  A  *  S  K  E  G  C  L  L  L  L  M  R  P  N  F  V  R  Y  P  G  M  P  L  S  F  A  S  V  H  K  S  R  F  A  T  L  *  K  D  *  G  Q  I  C  R  S  Q  P  Y  R  *   </first_frame>
            <second_frame>  D  D  Q  P  G  S  Y  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  S  C  T  S  T  S  G  F  G  S  T  T  C  N  C  C  G  S  L  H  G  C  L  I  G  S  R  H  V  S  S  I  D  Y  R  V  Y  N  D  G  *  S  A  *  T  F  H  *  I  L  E  V  E  T  S  S  L  Q  G  C  *  I  L  G  C  L  *  F  S  N  *  L  S  *  A  A  T  *  D  G  H  S  R  T  I  Q  C  *  V  C  D  I  S  V  S  V  E  C  Q  N  V  V  A  V  V  C  *  V  S  T  S  T  G  T  T  Y  D  L  D  I  I  L  *  L  I  Y  G  K  V  Y  T  P  D  F  E  G  *  E  E  R  *  V  L  K  P  R  A  R  K  D  V  C  C  C  L  *  G  Q  I  S  C  A  I  Q  V  C  H  L  A  L  L  Q  S  T  R  A  D  S  P  L  C  E  R  I  E  V  R  F  V  G  P  S  L  T  G  S  </second_frame>
            <third_frame>   M  I  N  Q  V  L  T  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  P  V  P  A  P  Q  V  S  G  V  Q  H  A  T  A  V  A  P  C  M  D  A  S  L  E  V  G  T  F  P  R  L  T  T  G  S  I  M  T  G  N  Q  H  E  L  F  T  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  *  D  A  Y  D  F  L  I  D  C  H  E  L  L  H  K  M  D  I  V  E  R  F  S  V  E  F  V  T  Y  Q  F  Q  W  N  A  K  M  W  W  R  S  Y  V  E  C  Q  P  A  Q  A  P  P  M  T  W  T  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  R  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  A  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  *  L  C  F  S  P  Q  E  Q  I  R  H  F  V  K  G  L  R  S  D  L  *  V  P  A  L  Q  V  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48521" stop="48835"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DAYDFLIDCHELLHKMDIVERFSVEFVTYQFQWNAKMWWRSYVECQPAQAPPMTWTSFSSLFMEKYIPRTLRDRRRDEFLSLEQGRMSVAAYEAKFRALSRYAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48266" stop="48520"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MINQVLTYLSGLSDQGQTPPVFPVPAPQVSGVQHATAVAPCMDASLEVGTFPRLTTGSIMTGNQHELFTKFLKLKPPVFKGAES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="49829" PGL_stop="49499"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49829" e_stop="49499"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="49829" e_stop="49499" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49829" stop="49499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCGTAGGCTTGGCCAATGTCACAGTTTTAGCATTACAATCTAAGATTGCAAAATTTGGAGAAAGCCAAGTCAAACCCAGAATCACATCAAAATCAACCATTTCTAGAATAATCAAATCTACATGAGTATTGCTCCCCACAAAAGTCACAAGACAAGACCTATAAACCTTCTCAACTATCACAGACTCCCCCACAGGAGTAGAGACACGAATAGGCATGTCAAGCAAATCACAATATACATCAAGACCAGTAGCAAAGGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  *  A  W  P  M  S  Q  F  *  H  Y  N  L  R  L  Q  N  L  E  K  A  K  S  N  P  E  S  H  Q  N  Q  P  F  L  E  *  S  N  L  H  E  Y  C  S  P  Q  K  S  Q  D  K  T  Y  K  P  S  Q  L  S  Q  T  P  P  Q  E  *  R  H  E  *  A  C  Q  A  N  H  N  I  H  Q  D  Q  *  Q  R  R  K  I  H  M  K  M  W  I  Q  D  Q  I  I  Q  K  P  C  N  H  K  P  </first_frame>
            <second_frame>  I  C  R  R  L  G  Q  C  H  S  F  S  I  T  I  *  D  C  K  I  W  R  K  P  S  Q  T  Q  N  H  I  K  I  N  H  F  *  N  N  Q  I  Y  M  S  I  A  P  H  K  S  H  K  T  R  P  I  N  L  L  N  Y  H  R  L  P  H  R  S  R  D  T  N  R  H  V  K  Q  I  T  I  Y  I  K  T  S  S  K  G  G  R  Y  I  *  K  C  G  S  R  I  K  *  Y  R  S  H  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  V  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  K  P  R  I  T  S  K  S  T  I  S  R  I  I  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  *  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  K  S  Q  Y  T  S  R  P  V  A  K  E  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0020F17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="70476" PGL_stop="70043"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70476" e_stop="70043"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="70476" e_stop="70043" e_length="434"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70476" stop="70043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70370" stop="70043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224269" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAGTTCAATTAGATTAATTTGATTTTTTTTTAAAAAAATATAGATACATAAAAATTATTTGAATTGTGATTTCTTTTGCATATCAAAACGATAAAAAAAAGTTGTTTGTAAAATGTTTGTCAACAATTGATAGTGAACGAGTAGAGTAGAATATTTGAGGTACTGATGTTCTTTATTGAAATAATTGGGTAAAATAAGTAAATATAAATATAAAATTATTAAAATTGTAGCTTAAATAGCACAAACAAGAATGATAGATCTCTTCATGTACGAGTTTCAATACCACTAATGCAAATAAATAGTGGTATAGTTTATAACAAGTTCTTTACAAAATGTCTATTTATATGGTAACACTAAAATTTAAATTATAATTTAGTATACATTATATTAATTACACGCAAAACTCATTTAACATAAAAAAAAAAAAGAGTT</gDNA_template>
            <first_frame> Q  S  S  I  R  L  I  *  F  F  F  K  K  I  *  I  H  K  N  Y  L  N  C  D  F  F  C  I  S  K  R  *  K  K  V  V  C  K  M  F  V  N  N  *  *  *  T  S  R  V  E  Y  L  R  Y  *  C  S  L  L  K  *  L  G  K  I  S  K  Y  K  Y  K  I  I  K  I  V  A  *  I  A  Q  T  R  M  I  D  L  F  M  Y  E  F  Q  Y  H  *  C  K  *  I  V  V  *  F  I  T  S  S  L  Q  N  V  Y  L  Y  G  N  T  K  I  *  I  I  I  *  Y  T  L  Y  *  L  H  A  K  L  I  *  H  K  K  K  K  E   </first_frame>
            <second_frame>  K  V  Q  L  D  *  F  D  F  F  L  K  K  Y  R  Y  I  K  I  I  *  I  V  I  S  F  A  Y  Q  N  D  K  K  K  L  F  V  K  C  L  S  T  I  D  S  E  R  V  E  *  N  I  *  G  T  D  V  L  Y  *  N  N  W  V  K  *  V  N  I  N  I  K  L  L  K  L  *  L  K  *  H  K  Q  E  *  *  I  S  S  C  T  S  F  N  T  T  N  A  N  K  *  W  Y  S  L  *  Q  V  L  Y  K  M  S  I  Y  M  V  T  L  K  F  K  L  *  F  S  I  H  Y  I  N  Y  T  Q  N  S  F  N  I  K  K  K  K  S  </second_frame>
            <third_frame>   K  F  N  *  I  N  L  I  F  F  *  K  N  I  D  T  *  K  L  F  E  L  *  F  L  L  H  I  K  T  I  K  K  S  C  L  *  N  V  C  Q  Q  L  I  V  N  E  *  S  R  I  F  E  V  L  M  F  F  I  E  I  I  G  *  N  K  *  I  *  I  *  N  Y  *  N  C  S  L  N  S  T  N  K  N  D  R  S  L  H  V  R  V  S  I  P  L  M  Q  I  N  S  G  I  V  Y  N  K  F  F  T  K  C  L  F  I  W  *  H  *  N  L  N  Y  N  L  V  Y  I  I  L  I  T  R  K  T  H  L  T  *  K  K  K  R  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0020F17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="86732" PGL_stop="86292"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86732" e_stop="86292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="86732" e_stop="86292" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86732" stop="86292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353715" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAATTTTCGTGAATATGCTATCAGATGGAGGGAACAAGCTGCTAGAGTTAAACCAACGACGAAGGAGTCAGAGATGATCAACATTTTTCTCCAAGCGCAAGAACCTGATTACTTTCACTATCTGCTTTCTGCCATATGGAAGTCATTCGCTGAAGATAAGGTAGGGGAAATAGTGGGAAATGGCATCAAGTCTGGAAAGATTGTAAGTCAAGATGCCTTAAAAGTCACAACACAAGTGCTTCAAAATGGTTCTGGAAATATTGGAGGGAAGAAGAGAAGGGAGGATGTGGCCACTATTGTATCAGCGCCTAGGACTCATGTTCAAGGTAATTCCCCACAAGACTATTTTCCTTCCCAAGCTCCACAATATTCTGTTCCATACAGTCCATATCATGTTTTTAATGCACAACCAATTGCACCCCGTTCTTATCCACAATG</gDNA_template>
            <first_frame> G  K  F  S  *  I  C  Y  Q  M  E  G  T  S  C  *  S  *  T  N  D  E  G  V  R  D  D  Q  H  F  S  P  S  A  R  T  *  L  L  S  L  S  A  F  C  H  M  E  V  I  R  *  R  *  G  R  G  N  S  G  K  W  H  Q  V  W  K  D  C  K  S  R  C  L  K  S  H  N  T  S  A  S  K  W  F  W  K  Y  W  R  E  E  E  K  G  G  C  G  H  Y  C  I  S  A  *  D  S  C  S  R  *  F  P  T  R  L  F  S  F  P  S  S  T  I  F  C  S  I  Q  S  I  S  C  F  *  C  T  T  N  C  T  P  F  L  S  T  M </first_frame>
            <second_frame>  E  N  F  R  E  Y  A  I  R  W  R  E  Q  A  A  R  V  K  P  T  T  K  E  S  E  M  I  N  I  F  L  Q  A  Q  E  P  D  Y  F  H  Y  L  L  S  A  I  W  K  S  F  A  E  D  K  V  G  E  I  V  G  N  G  I  K  S  G  K  I  V  S  Q  D  A  L  K  V  T  T  Q  V  L  Q  N  G  S  G  N  I  G  G  K  K  R  R  E  D  V  A  T  I  V  S  A  P  R  T  H  V  Q  G  N  S  P  Q  D  Y  F  P  S  Q  A  P  Q  Y  S  V  P  Y  S  P  Y  H  V  F  N  A  Q  P  I  A  P  R  S  Y  P  Q   </second_frame>
            <third_frame>   K  I  F  V  N  M  L  S  D  G  G  N  K  L  L  E  L  N  Q  R  R  R  S  Q  R  *  S  T  F  F  S  K  R  K  N  L  I  T  F  T  I  C  F  L  P  Y  G  S  H  S  L  K  I  R  *  G  K  *  W  E  M  A  S  S  L  E  R  L  *  V  K  M  P  *  K  S  Q  H  K  C  F  K  M  V  L  E  I  L  E  G  R  R  E  G  R  M  W  P  L  L  Y  Q  R  L  G  L  M  F  K  V  I  P  H  K  T  I  F  L  P  K  L  H  N  I  L  F  H  T  V  H  I  M  F  L  M  H  N  Q  L  H  P  V  L  I  H  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86731" stop="86294"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENFREYAIRWREQAARVKPTTKESEMINIFLQAQEPDYFHYLLSAIWKSFAEDKVGEIVGNGIKSGKIVSQDALKVTTQVLQNGSGNIGGKKRREDVATIVSAPRTHVQGNSPQDYFPSQAPQYSVPYSPYHVFNAQPIAPRSYPQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="87359" PGL_stop="86945"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87359" e_stop="86945"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="87359" e_stop="86945" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87359" stop="86945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274122" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGATAAGTAATCCACTCTTTGTGTCAATTGCCCCGACTAACAGCATCCGGCAGCCAACGATGGTGCCCAAATCCAACAGCGATCCTCTAACCAAAGTTCGGCATGATCAGAGTTACACTCTTGAAGAGGCCATTAAAATTCCAAGCTCTCATCCCCACATTCATCAACATAGTTCCCCTGTCGAAATTGAGAAGATGGTCAAGAATGAGGAACGTGAAGAAATGACTAAGAAAATGAAGAATTTGGAACAGAGTATAAGAGATATGCAAGGACTAGGAGGCCACAAAGGCATCTCGTTCAGTGACTTGTGTATGTTTTCTCACGTCCATTTGCCTGCTGGTTTTAAAACTCCAAAGTTTGAAAAATACGATGGTCACGGAGACCCCATAGCTCATCTAAAGATATATTGCAAC</gDNA_template>
            <first_frame> C  D  K  *  S  T  L  C  V  N  C  P  D  *  Q  H  P  A  A  N  D  G  A  Q  I  Q  Q  R  S  S  N  Q  S  S  A  *  S  E  L  H  S  *  R  G  H  *  N  S  K  L  S  S  P  H  S  S  T  *  F  P  C  R  N  *  E  D  G  Q  E  *  G  T  *  R  N  D  *  E  N  E  E  F  G  T  E  Y  K  R  Y  A  R  T  R  R  P  Q  R  H  L  V  Q  *  L  V  Y  V  F  S  R  P  F  A  C  W  F  *  N  S  K  V  *  K  I  R  W  S  R  R  P  H  S  S  S  K  D  I  L  Q  </first_frame>
            <second_frame>  V  I  S  N  P  L  F  V  S  I  A  P  T  N  S  I  R  Q  P  T  M  V  P  K  S  N  S  D  P  L  T  K  V  R  H  D  Q  S  Y  T  L  E  E  A  I  K  I  P  S  S  H  P  H  I  H  Q  H  S  S  P  V  E  I  E  K  M  V  K  N  E  E  R  E  E  M  T  K  K  M  K  N  L  E  Q  S  I  R  D  M  Q  G  L  G  G  H  K  G  I  S  F  S  D  L  C  M  F  S  H  V  H  L  P  A  G  F  K  T  P  K  F  E  K  Y  D  G  H  G  D  P  I  A  H  L  K  I  Y  C  N </second_frame>
            <third_frame>   *  *  V  I  H  S  L  C  Q  L  P  R  L  T  A  S  G  S  Q  R  W  C  P  N  P  T  A  I  L  *  P  K  F  G  M  I  R  V  T  L  L  K  R  P  L  K  F  Q  A  L  I  P  T  F  I  N  I  V  P  L  S  K  L  R  R  W  S  R  M  R  N  V  K  K  *  L  R  K  *  R  I  W  N  R  V  *  E  I  C  K  D  *  E  A  T  K  A  S  R  S  V  T  C  V  C  F  L  T  S  I  C  L  L  V  L  K  L  Q  S  L  K  N  T  M  V  T  E  T  P  *  L  I  *  R  Y  I  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87358" stop="86945"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VISNPLFVSIAPTNSIRQPTMVPKSNSDPLTKVRHDQSYTLEEAIKIPSSHPHIHQHSSPVEIEKMVKNEEREEMTKKMKNLEQSIRDMQGLGGHKGISFSDLCMFSHVHLPAGFKTPKFEKYDGHGDPIAHLKIYCN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="89539" PGL_stop="89270"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89539" e_stop="89270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="89539" e_stop="89270" e_length="270"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89539" stop="89270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89489" stop="89270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAACAAACGTGCCGTCGTCTTCAACTCAACCGCAACTCTAGCCAGTCTTCATTACACCGGATTTCAAGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTCGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTAGTAATTTGAGGATAGATGTTCTTGTGATGATGACTTCCAGATTTAAGGGGATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAT</gDNA_template>
            <first_frame> C  N  K  R  A  V  V  F  N  S  T  A  T  L  A  S  L  H  Y  T  G  F  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  C  L  D  A  L  K  F  R  H  G  L  A  F  Y  V  F  *  L  L  R  Y  S  *  I  S  N  L  R  I  D  V  L  V  M  M  T  S  R  F  K  G  I  I  I  V  V  E  F  L  E  V  I  D </first_frame>
            <second_frame>  A  T  N  V  P  S  S  S  T  Q  P  Q  L  *  P  V  F  I  T  P  D  F  K  V  S  *  C  F  *  L  G  L  D  L  P  L  H  V  S  M  P  *  S  S  G  M  D  *  L  F  M  Y  F  S  F  L  D  T  L  R  L  V  I  *  G  *  M  F  L  *  *  *  L  P  D  L  R  G  *  *  *  L  L  S  F  *  K  L  L   </second_frame>
            <third_frame>   Q  Q  T  C  R  R  L  Q  L  N  R  N  S  S  Q  S  S  L  H  R  I  S  R  *  A  N  A  S  S  L  D  W  I  F  L  F  M  S  R  C  L  E  V  P  A  W  T  S  F  L  C  I  L  A  S  *  I  L  L  D  *  *  F  E  D  R  C  S  C  D  D  D  F  Q  I  *  G  D  N  N  S  C  *  V  F  R  S  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0020F17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="98585" PGL_stop="98761"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98585" e_stop="98761"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="98585" e_stop="98761" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98585" stop="98761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACATACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  Y  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  H  I  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0020F17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="100066" PGL_stop="100816"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100066" e_stop="100816"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="100066" e_stop="100816" e_length="751"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100066" stop="100778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100066" stop="100661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100066" stop="100591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100137" stop="100816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100137" stop="100495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTTACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCATGTGCCCTAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGTTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTAATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTATAGATTCGTAATTCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCAACCTTCTTCTTTACAAACAGAACCGGAGCACCCCAAGGAGATGCATTTGGTCTAATAAAGCCTTTGCTTAGCAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  Y  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  *  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  F  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  V  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  C  S  R  G  I  R  K  T  K  R  H  H  Y  R  F  V  I  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  N  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  I  W  S  N  K  A  F  A  *  Q  L  L  K  L  C  L  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  M  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  M  *  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  I  D  S  *  F  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  T  F  F  F  T  N  R  T  G  A  P  Q  G  D  A  F  G  L  I  K  P  L  L  S  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  L  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  C  A  L  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  V  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  C  N  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  R  S  S  N  S  *  M  Q  Q  G  H  S  *  D  Q  K  T  S  L  *  I  R  N  S  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  Q  P  S  S  L  Q  T  E  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  L  A  T  L  E  V  V  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100231" stop="100569"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKFFLPQHFQYHSQMLLMFLLTFRVYQYVINKYDHKEIQIWLKNPVHQTHECSRGIRKTKRHHYRFVIPIPGSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="101589" PGL_stop="101304"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101589" e_stop="101304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="101589" e_stop="101304" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101589" stop="101304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGGCCATCTTCACTCTATTTCGCGGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAATATCGGCAAAACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  R  A  I  T  W  V  Q  L  V  S  R  *  Y  K  L  V  S  G  H  L  H  S  I  S  R  M  V  R  T  R  A  T  T  A  P  T  P  I  S  A  K  Q  E  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  A  I  F  T  L  F  R  G  W  L  E  L  E  Q  R  L  R  Q  H  Q  Y  R  Q  N  K  K  R  L  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  L  S  C  Y  Y  L  G  P  I  G  I  *  V  I  Q  I  G  I  W  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  D  C  A  N  T  N  I  G  K  T  R  S  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101540" stop="101304"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFFLSFVLLLGSNWYLGDTNWYLAIFTLFRGWLELEQRLRQHQYRQNKKRLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="102233" PGL_stop="101998"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102233" e_stop="101998"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="102233" e_stop="101998" e_length="236"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102233" stop="101998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGAGCTTGGTGTTGTAACCAAGGGTTATGATAATTGTAAATGCTGCATGCTAAGGATATTAATTGATTTTATGATATTATCTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTTGTTATTTGTG</gDNA_template>
            <first_frame> *  *  T  *  F  P  N  E  Y  D  E  E  A  *  V  L  I  D  E  L  G  V  V  T  K  G  Y  D  N  C  K  C  C  M  L  R  I  L  I  D  F  M  I  L  S  N  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  C  Y  L   </first_frame>
            <second_frame>  N  E  P  N  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  S  L  V  L  *  P  R  V  M  I  I  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  Y  L  I  Y  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  F  V  I  C  </second_frame>
            <third_frame>   M  N  L  I  P  K  *  V  *  *  G  G  V  S  P  H  *  *  A  W  C  C  N  Q  G  L  *  *  L  *  M  L  H  A  K  D  I  N  *  F  Y  D  I  I  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  L  L  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0020F17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="102089" PGL_stop="102837"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102089" e_stop="102470"/>
            <exon e_start="102702" e_stop="102837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.241" acc_prob="0.000" e_score="0.903"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="102089" e_stop="102470" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="0.241" acc_prob="0.000">
            <gDNA_intron_boundary i_start="102471" i_stop="102701" i_length="231"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="102702" e_stop="102837" e_length="136"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102089" stop="102470"/>
              <exon start="102702" stop="102837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTATATATTAGATAATATCATAAAATCAATTAATATCCTTAGCATGCAGCATTTACAATTATCATAACCCTTGGTTACAACACCAAGCTCATCAATGAGGACTCACGCCTCCTCATCATACTCATTTGGGAATTAGGTTCATTAGATTGAATATATTAACATCTTTCAAGATTCATTATCTTTATTCCTCTCGTGTCGGTACGTGACACTCCGCTTCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGTGTCACTCTGATCCTTATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTG : GTGTCGGAACGTGACACTCCGATCCTCATATACAATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAAAGTAGATTAGG</gDNA_template>
            <first_frame> S  I  Y  *  I  I  S  *  N  Q  L  I  S  L  A  C  S  I  Y  N  Y  H  N  P  W  L  Q  H  Q  A  H  Q  *  G  L  T  P  P  H  H  T  H  L  G  I  R  F  I  R  L  N  I  L  T  S  F  K  I  H  Y  L  Y  S  S  R  V  G  T  *  H  S  A  S  H  I  L  S  W  Y  R  N  V  A  P  D  P  Y  S  I  L  V  P  E  R  G  T  R  S  I  Y  Y  P  G  V  G  T  C  H  S  D  P  Y  S  I  L  V  P  E  R  G  T  R  S  I  F  Y  P   : G  V  G  T  *  H  S  D  P  H  I  Q  S  W  Y  R  N  V  A  P  D  P  L  I  S  L  L  S  F  I  K  P  S  F  I  P  R  H  H  H  *  Q  S  R  L   </first_frame>
            <second_frame>  V  Y  I  R  *  Y  H  K  I  N  *  Y  P  *  H  A  A  F  T  I  I  I  T  L  G  Y  N  T  K  L  I  N  E  D  S  R  L  L  I  I  L  I  W  E  L  G  S  L  D  *  I  Y  *  H  L  S  R  F  I  I  F  I  P  L  V  S  V  R  D  T  P  L  L  I  Y  Y  P  G  T  G  T  W  H  P  I  H  I  L  S  W  Y  R  N  V  A  P  D  P  Y  T  I  L  V  S  E  R  V  T  L  I  L  I  L  S  W  Y  R  N  V  A  P  D  P  Y  S  I  L  :  V  S  E  R  D  T  P  I  L  I  Y  N  P  G  T  G  T  W  H  P  I  P  *  S  H  Y  F  R  S  S  S  L  L  L  Y  Q  G  I  I  I  N  K  V  D  *  </second_frame>
            <third_frame>   Y  I  L  D  N  I  I  K  S  I  N  I  L  S  M  Q  H  L  Q  L  S  *  P  L  V  T  T  P  S  S  S  M  R  T  H  A  S  S  S  Y  S  F  G  N  *  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  S  C  R  Y  V  T  L  R  F  S  Y  T  I  L  V  P  E  R  G  T  R  S  I  F  Y  P  G  T  G  T  W  H  P  I  H  I  L  S  W  C  R  N  V  S  L  *  S  L  F  Y  P  G  T  G  T  W  H  P  I  H  I  L  S  W :   C  R  N  V  T  L  R  S  S  Y  T  I  L  V  P  E  R  G  T  R  S  P  N  L  T  T  F  V  H  Q  A  F  F  Y  T  K  A  S  S  L  T  K  *  I  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102249" stop="102470"/>
                    <exon start="102702" stop="102770"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLSRFIIFIPLVSVRDTPLLIYYPGTGTWHPIHILSWYRNVAPDPYTILVSERVTLILILSWYRNVAPDPYSILVSERDTPILIYNPGTGTWHPIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="112738" PGL_stop="112060"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112738" e_stop="112060"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="112738" e_stop="112060" e_length="679"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112738" stop="112066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112669" stop="112060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215035" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGCAAATATGTCAATTGAACGAGTTAGGCGAGCAGTGACATATATCAGGCAATCTCTTGCTTGGAAGTAAAACTTTCAAGAATGTTGTGAAGATGAAAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCAATAAGATAGAATTCCACCTACATGATGTTGAGCAAGGTTATTGAATATGAAAGGGCAATTGTAGAGTACGCCGATCGTGATATTGGCTTGTCACTATATCTTAAGTTTGTTGATAAAAATTCTACAGGTACACTTTTGAATAGTGACTGGGAGGGCGTAAAGAGAATTACAAAATTTCTTGAAATGTTTTTTAATCTTACTTTGAAGATATCTGGTTCACGATATGTTACATATAATCTTTATTTTCTTGAAAGTTGTCAAGTTGGTGTTTACTTGAATCAGTTGATATCAAATGAAGATCATGTTTTGGATAAAATGACAGAAAATATGAAGGAGAAATTTGACAACTATTGGGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGCGTTTTGGATCCTCGTCACAAATTTAGAACTCTTGGCTTTGAACTTAAGAAGATGTTTGGAGAAAAAGGGGCTGCTATAGAAAATGGTGTGCGAACGTACATGGAAGCTTTGTTTAATGAGTACACAAAGCCCATTTCAAATTATAAA</gDNA_template>
            <first_frame> R  S  K  Y  V  N  *  T  S  *  A  S  S  D  I  Y  Q  A  I  S  C  L  E  V  K  L  S  R  M  L  *  R  *  K  S  C  *  K  V  F  M  L  G  C  S  N  K  I  E  F  H  L  H  D  V  E  Q  G  Y  *  I  *  K  G  N  C  R  V  R  R  S  *  Y  W  L  V  T  I  S  *  V  C  *  *  K  F  Y  R  Y  T  F  E  *  *  L  G  G  R  K  E  N  Y  K  I  S  *  N  V  F  *  S  Y  F  E  D  I  W  F  T  I  C  Y  I  *  S  L  F  S  *  K  L  S  S  W  C  L  L  E  S  V  D  I  K  *  R  S  C  F  G  *  N  D  R  K  Y  E  G  E  I  *  Q  L  L  G  *  C  *  K  N  E  *  D  G  F  H  T  M  R  F  G  S  S  S  Q  I  *  N  S  W  L  *  T  *  E  D  V  W  R  K  R  G  C  Y  R  K  W  C  A  N  V  H  G  S  F  V  *  *  V  H  K  A  H  F  K  L  *  </first_frame>
            <second_frame>  E  A  N  M  S  I  E  R  V  R  R  A  V  T  Y  I  R  Q  S  L  A  W  K  *  N  F  Q  E  C  C  E  D  E  N  L  A  K  K  S  L  C  L  D  V  P  I  R  *  N  S  T  Y  M  M  L  S  K  V  I  E  Y  E  R  A  I  V  E  Y  A  D  R  D  I  G  L  S  L  Y  L  K  F  V  D  K  N  S  T  G  T  L  L  N  S  D  W  E  G  V  K  R  I  T  K  F  L  E  M  F  F  N  L  T  L  K  I  S  G  S  R  Y  V  T  Y  N  L  Y  F  L  E  S  C  Q  V  G  V  Y  L  N  Q  L  I  S  N  E  D  H  V  L  D  K  M  T  E  N  M  K  E  K  F  D  N  Y  W  G  D  A  E  K  M  N  K  M  V  F  I  P  C  V  L  D  P  R  H  K  F  R  T  L  G  F  E  L  K  K  M  F  G  E  K  G  A  A  I  E  N  G  V  R  T  Y  M  E  A  L  F  N  E  Y  T  K  P  I  S  N  Y  K </second_frame>
            <third_frame>   K  Q  I  C  Q  L  N  E  L  G  E  Q  *  H  I  S  G  N  L  L  L  G  S  K  T  F  K  N  V  V  K  M  K  I  L  L  K  S  L  Y  A  W  M  F  Q  *  D  R  I  P  P  T  *  C  *  A  R  L  L  N  M  K  G  Q  L  *  S  T  P  I  V  I  L  A  C  H  Y  I  L  S  L  L  I  K  I  L  Q  V  H  F  *  I  V  T  G  R  A  *  R  E  L  Q  N  F  L  K  C  F  L  I  L  L  *  R  Y  L  V  H  D  M  L  H  I  I  F  I  F  L  K  V  V  K  L  V  F  T  *  I  S  *  Y  Q  M  K  I  M  F  W  I  K  *  Q  K  I  *  R  R  N  L  T  T  I  G  V  M  L  K  K  *  I  R  W  F  S  Y  H  A  F  W  I  L  V  T  N  L  E  L  L  A  L  N  L  R  R  C  L  E  K  K  G  L  L  *  K  M  V  C  E  R  T  W  K  L  C  L  M  S  T  Q  S  P  F  Q  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0020F17.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112593" stop="112060"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSTYMMLSKVIEYERAIVEYADRDIGLSLYLKFVDKNSTGTLLNSDWEGVKRITKFLEMFFNLTLKISGSRYVTYNLYFLESCQVGVYLNQLISNEDHVLDKMTENMKEKFDNYWGDAEKMNKMVFIPCVLDPRHKFRTLGFELKKMFGEKGAAIENGVRTYMEALFNEYTKPISNYK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 279 chains have been computed
$ 
$ memory statistics:
$ 293144 bytes spliced alignments in total
$ 83 spliced alignments have been stored
$ 3531 bytes was the average size of a spliced alignment
$ 25312 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1687 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 355 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 17:44:54
-->
