##gff-version 3
##sequence-region C03HBa0192B12.1 1 8734
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match	2070	3665	1.000	+	0	ID=SGN-E280400_alignment_1;Target=SGN-E280400 1 371 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	2070	2155	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_1;Target=SGN-E280400 1 86 +;Parent=SGN-E280400_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	2255	2311	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_2;Target=SGN-E280400 87 143 +;Parent=SGN-E280400_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	2951	3025	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_3;Target=SGN-E280400 144 218 +;Parent=SGN-E280400_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	3411	3530	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_4;Target=SGN-E280400 219 338 +;Parent=SGN-E280400_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	3633	3665	0.970	+	0	ID=GTH_SGN_E_tom_potato_match_part_5;Target=SGN-E280400 339 371 +;Parent=SGN-E280400_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match	2075	4413	0.910	+	0	ID=SGN-E272771_alignment_1;Target=SGN-E272771 1 575 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	2075	2155	0.938	+	0	ID=GTH_SGN_E_tom_potato_match_part_6;Target=SGN-E272771 1 81 +;Parent=SGN-E272771_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	2255	2311	0.895	+	0	ID=GTH_SGN_E_tom_potato_match_part_7;Target=SGN-E272771 82 138 +;Parent=SGN-E272771_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	2951	3025	0.853	+	0	ID=GTH_SGN_E_tom_potato_match_part_8;Target=SGN-E272771 139 213 +;Parent=SGN-E272771_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	3411	3530	0.900	+	0	ID=GTH_SGN_E_tom_potato_match_part_9;Target=SGN-E272771 214 333 +;Parent=SGN-E272771_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	3633	3803	0.924	+	0	ID=GTH_SGN_E_tom_potato_match_part_10;Target=SGN-E272771 334 504 +;Parent=SGN-E272771_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	4343	4413	0.930	+	0	ID=GTH_SGN_E_tom_potato_match_part_11;Target=SGN-E272771 505 575 +;Parent=SGN-E272771_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match	2108	4761	0.970	+	0	ID=SGN-E600377_alignment_1;Target=SGN-E600377 1 676 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	2108	2155	0.979	+	0	ID=GTH_SGN_E_tom_potato_match_part_12;Target=SGN-E600377 1 48 +;Parent=SGN-E600377_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	2255	2311	0.982	+	0	ID=GTH_SGN_E_tom_potato_match_part_13;Target=SGN-E600377 49 105 +;Parent=SGN-E600377_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	2951	3025	0.960	+	0	ID=GTH_SGN_E_tom_potato_match_part_14;Target=SGN-E600377 106 180 +;Parent=SGN-E600377_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	3411	3530	0.992	+	0	ID=GTH_SGN_E_tom_potato_match_part_15;Target=SGN-E600377 181 300 +;Parent=SGN-E600377_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	3633	3803	0.971	+	0	ID=GTH_SGN_E_tom_potato_match_part_16;Target=SGN-E600377 301 471 +;Parent=SGN-E600377_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	4343	4456	0.965	+	0	ID=GTH_SGN_E_tom_potato_match_part_17;Target=SGN-E600377 472 585 +;Parent=SGN-E600377_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	4673	4761	0.944	+	0	ID=GTH_SGN_E_tom_potato_match_part_18;Target=SGN-E600377 586 676 +;Parent=SGN-E600377_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match	2119	4411	1.000	+	0	ID=SGN-E290993_alignment_1;Target=SGN-E290993 1 529 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	2119	2155	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_19;Target=SGN-E290993 1 37 +;Parent=SGN-E290993_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	2255	2311	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_20;Target=SGN-E290993 38 94 +;Parent=SGN-E290993_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	2951	3025	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_21;Target=SGN-E290993 95 169 +;Parent=SGN-E290993_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	3411	3530	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_22;Target=SGN-E290993 170 289 +;Parent=SGN-E290993_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	3633	3803	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_23;Target=SGN-E290993 290 460 +;Parent=SGN-E290993_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	4343	4411	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_24;Target=SGN-E290993 461 529 +;Parent=SGN-E290993_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match	2951	3526	0.984	+	0	ID=SGN-E272292_alignment_1;Target=SGN-E272292 17 207 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	2951	3025	0.960	+	0	ID=GTH_SGN_E_tom_potato_match_part_25;Target=SGN-E272292 17 91 +;Parent=SGN-E272292_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	3411	3526	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_26;Target=SGN-E272292 92 207 +;Parent=SGN-E272292_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match	3496	5399	0.998	+	0	ID=SGN-E346027_alignment_1;Target=SGN-E346027 1 685 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	3496	3530	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_27;Target=SGN-E346027 1 35 +;Parent=SGN-E346027_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	3633	3803	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_28;Target=SGN-E346027 36 206 +;Parent=SGN-E346027_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	4343	4456	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_29;Target=SGN-E346027 207 320 +;Parent=SGN-E346027_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	4673	4843	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_30;Target=SGN-E346027 321 491 +;Parent=SGN-E346027_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	5206	5399	0.995	+	0	ID=GTH_SGN_E_tom_potato_match_part_31;Target=SGN-E346027 492 685 +;Parent=SGN-E346027_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match	4343	5600	0.946	+	0	ID=SGN-E612659_alignment_1;Target=SGN-E612659 12 693 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	4343	4456	0.965	+	0	ID=GTH_SGN_E_tom_potato_match_part_32;Target=SGN-E612659 12 125 +;Parent=SGN-E612659_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	4673	4843	0.988	+	0	ID=GTH_SGN_E_tom_potato_match_part_33;Target=SGN-E612659 126 296 +;Parent=SGN-E612659_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	5206	5600	0.922	+	0	ID=GTH_SGN_E_tom_potato_match_part_34;Target=SGN-E612659 297 693 +;Parent=SGN-E612659_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match	4422	5627	0.968	+	0	ID=SGN-E690766_alignment_1;Target=SGN-E690766 1 624 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	4422	4456	0.771	+	0	ID=GTH_SGN_E_tom_potato_match_part_35;Target=SGN-E690766 1 34 +;Parent=SGN-E690766_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	4673	4843	0.977	+	0	ID=GTH_SGN_E_tom_potato_match_part_36;Target=SGN-E690766 35 205 +;Parent=SGN-E690766_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	5206	5627	0.964	+	0	ID=GTH_SGN_E_tom_potato_match_part_37;Target=SGN-E690766 206 624 +;Parent=SGN-E690766_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match	4425	5627	0.973	+	0	ID=SGN-E690765_alignment_1;Target=SGN-E690765 1 622 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	4425	4456	0.938	+	0	ID=GTH_SGN_E_tom_potato_match_part_38;Target=SGN-E690765 1 32 +;Parent=SGN-E690765_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	4673	4843	0.994	+	0	ID=GTH_SGN_E_tom_potato_match_part_39;Target=SGN-E690765 33 203 +;Parent=SGN-E690765_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	5206	5627	0.964	+	0	ID=GTH_SGN_E_tom_potato_match_part_40;Target=SGN-E690765 204 622 +;Parent=SGN-E690765_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match	4426	5627	0.961	+	0	ID=SGN-E694606_alignment_1;Target=SGN-E694606 1 620 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	4426	4456	0.968	+	0	ID=GTH_SGN_E_tom_potato_match_part_41;Target=SGN-E694606 1 31 +;Parent=SGN-E694606_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	4673	4843	0.994	+	0	ID=GTH_SGN_E_tom_potato_match_part_42;Target=SGN-E694606 32 202 +;Parent=SGN-E694606_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	5206	5627	0.948	+	0	ID=GTH_SGN_E_tom_potato_match_part_43;Target=SGN-E694606 203 620 +;Parent=SGN-E694606_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match	4426	5627	0.965	+	0	ID=SGN-E694605_alignment_1;Target=SGN-E694605 1 620 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	4426	4456	0.968	+	0	ID=GTH_SGN_E_tom_potato_match_part_44;Target=SGN-E694605 1 31 +;Parent=SGN-E694605_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	4673	4843	0.994	+	0	ID=GTH_SGN_E_tom_potato_match_part_45;Target=SGN-E694605 32 202 +;Parent=SGN-E694605_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	5206	5627	0.953	+	0	ID=GTH_SGN_E_tom_potato_match_part_46;Target=SGN-E694605 203 620 +;Parent=SGN-E694605_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match	5447	5616	0.906	+	0	ID=SGN-E597770_alignment_1;Target=SGN-E597770 1 170 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	match_part	5447	5616	0.906	+	0	ID=GTH_SGN_E_tom_potato_match_part_47;Target=SGN-E597770 1 170 +;Parent=SGN-E597770_alignment_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	gene	2070	5627	.	+	0	ID=GTH_SGN_E_tom_potato_gene_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	mRNA	2070	5627	.	+	0	ID=GTH_SGN_E_tom_potato_gene_1_AGS_1;Parent=GTH_SGN_E_tom_potato_gene_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	exon	2070	2155	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_1;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	exon	2255	2311	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_2;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	exon	2951	3025	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_3;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	exon	3411	3530	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_4;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	exon	3633	3803	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_5;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	exon	4343	4456	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_6;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	exon	4673	4843	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_7;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato_potato	exon	5206	5627	0.964	+	0	ID=GTH_SGN_E_tom_potato_exon_8;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C03HBa0192B12.1	RepeatMasker	nucleotide_motif	6277	6406	308	-	0	ID=Copia00110_alignment_1;Target=Copia00110 2601 2724 -
C03HBa0192B12.1	RepeatMasker	nucleotide_motif	6295	6542	322	+	0	ID=TLP2_alignment_1;Target=TLP2 15 253 +
C03HBa0192B12.1	BLAST_tomato_bacs	match	1151	3081	3620	+	0	ID=C00HBa0142A05.2_rev_alignment_1;blast_gaps=0;Target=clone-C00HBa0142A05.2 111392 113322 -;blast_match_length=1930;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C03HBa0192B12.1	BLAST_tomato_bacs	match	3643	8037	8492	+	0	ID=C00HBa0142A05.2_rev_alignment_2;blast_gaps=0;Target=clone-C00HBa0142A05.2 106436 110830 -;blast_match_length=4394;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C03HBa0192B12.1	BLAST_tomato_bacs	match	1	1150	2238	+	0	ID=C03HBa0295I12.1_rev_alignment_1;blast_gaps=0;Target=clone-C03HBa0295I12.1 1 1150 -;blast_match_length=1149;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C03HBa0192B12.1	BLAST_tomato_bac_ends	clone	2	8710	1117	.	0	is_problematic=1;ID=C03HBa0192B12.1-LE_HBa0192B12_1
C03HBa0192B12.1	BLAST_tomato_bac_ends	clone_start	2	683	1302	+	0	ID=C03HBa0192B12.1-LE_HBa0192B12_T7_107975_1;blast_gaps=0;Target=LE_HBa0192B12_T7_107975 1 682 +;Parent=C03HBa0192B12.1-LE_HBa0192B12_1;is_problematic=1;blast_percent_identity=99.85;blast_mismatches=1;blast_evalue=0.0
C03HBa0192B12.1	BLAST_tomato_bac_ends	clone_end	8209	8710	932	-	0	ID=C03HBa0192B12.1-LE_HBa0192B12_SP6_107974_1;blast_gaps=0;Target=LE_HBa0192B12_SP6_107974 1 502 +;Parent=C03HBa0192B12.1-LE_HBa0192B12_1;is_problematic=1;blast_percent_identity=99.60;blast_mismatches=2;blast_evalue=0.0
C03HBa0192B12.1	BLAST_tomato_bac_ends	clone_end	419	1119	1390	-	0	ID=C03HBa0192B12.1-LE_HBa0159C06_SP6_261401_1;blast_gaps=0;Target=LE_HBa0159C06_SP6_261401 8 708 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C03HBa0192B12.1	BLAST_tomato_bac_ends	clone_end	425	1133	1405	-	0	ID=C03HBa0192B12.1-LE_HBa0094F12_SP6_27526_1;blast_gaps=0;Target=LE_HBa0094F12_SP6_27526 5 713 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C03HBa0192B12.1	BLAST_tomato_bac_ends	clone_end	509	1116	1150	-	0	ID=C03HBa0192B12.1-LE_HBa0159D06_SP6_261443_1;blast_gaps=0;Target=LE_HBa0159D06_SP6_261443 1 608 +;is_problematic=0;blast_percent_identity=98.85;blast_mismatches=7;blast_evalue=0.0
C03HBa0192B12.1	BLAST_tomato_bac_ends	clone_start	1664	2389	1415	+	0	ID=C03HBa0192B12.1-LE_HBa0027J02_T7_137512_1;blast_gaps=0;Target=LE_HBa0027J02_T7_137512 1 726 +;is_problematic=0;blast_percent_identity=99.59;blast_mismatches=3;blast_evalue=0.0
C03HBa0192B12.1	BLAST_tomato_bac_ends	clone_start	1839	2568	1336	+	0	ID=C03HBa0192B12.1-LE_HBa0013H04_T7_128204_1;blast_gaps=0;Target=LE_HBa0013H04_T7_128204 1 730 +;is_problematic=0;blast_percent_identity=98.90;blast_mismatches=8;blast_evalue=0.0
C03HBa0192B12.1	BLAST_tomato_bac_ends	clone_start	2717	3025	565	-	0	ID=C03HBa0192B12.1-SL_FOS0187H01_pIBF_543816_1;blast_gaps=0;Target=SL_FOS0187H01_pIBF_543816 1 309 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=1e-158
C03HBa0192B12.1	BLAST_tomato_bac_ends	clone_start	6791	7563	1493	-	0	ID=C03HBa0192B12.1-SL_EcoRI0041G04_T7_238412_1;blast_gaps=0;Target=SL_EcoRI0041G04_T7_238412 1 773 +;is_problematic=0;blast_percent_identity=99.35;blast_mismatches=5;blast_evalue=0.0
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match	2070	3665	1.000	+	0	ID=SGN-E280400_alignment_2;Target=SGN-E280400 1 371 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	2070	2155	1.000	+	0	ID=GTH_SGN_E_tom_match_part_1;Target=SGN-E280400 1 86 +;Parent=SGN-E280400_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	2255	2311	1.000	+	0	ID=GTH_SGN_E_tom_match_part_2;Target=SGN-E280400 87 143 +;Parent=SGN-E280400_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	2951	3025	1.000	+	0	ID=GTH_SGN_E_tom_match_part_3;Target=SGN-E280400 144 218 +;Parent=SGN-E280400_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	3411	3530	1.000	+	0	ID=GTH_SGN_E_tom_match_part_4;Target=SGN-E280400 219 338 +;Parent=SGN-E280400_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	3633	3665	0.970	+	0	ID=GTH_SGN_E_tom_match_part_5;Target=SGN-E280400 339 371 +;Parent=SGN-E280400_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match	2075	4413	0.910	+	0	ID=SGN-E272771_alignment_2;Target=SGN-E272771 1 575 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	2075	2155	0.938	+	0	ID=GTH_SGN_E_tom_match_part_6;Target=SGN-E272771 1 81 +;Parent=SGN-E272771_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	2255	2311	0.895	+	0	ID=GTH_SGN_E_tom_match_part_7;Target=SGN-E272771 82 138 +;Parent=SGN-E272771_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	2951	3025	0.853	+	0	ID=GTH_SGN_E_tom_match_part_8;Target=SGN-E272771 139 213 +;Parent=SGN-E272771_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	3411	3530	0.900	+	0	ID=GTH_SGN_E_tom_match_part_9;Target=SGN-E272771 214 333 +;Parent=SGN-E272771_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	3633	3803	0.924	+	0	ID=GTH_SGN_E_tom_match_part_10;Target=SGN-E272771 334 504 +;Parent=SGN-E272771_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	4343	4413	0.930	+	0	ID=GTH_SGN_E_tom_match_part_11;Target=SGN-E272771 505 575 +;Parent=SGN-E272771_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match	2119	4411	1.000	+	0	ID=SGN-E290993_alignment_2;Target=SGN-E290993 1 529 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	2119	2155	1.000	+	0	ID=GTH_SGN_E_tom_match_part_12;Target=SGN-E290993 1 37 +;Parent=SGN-E290993_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	2255	2311	1.000	+	0	ID=GTH_SGN_E_tom_match_part_13;Target=SGN-E290993 38 94 +;Parent=SGN-E290993_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	2951	3025	1.000	+	0	ID=GTH_SGN_E_tom_match_part_14;Target=SGN-E290993 95 169 +;Parent=SGN-E290993_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	3411	3530	1.000	+	0	ID=GTH_SGN_E_tom_match_part_15;Target=SGN-E290993 170 289 +;Parent=SGN-E290993_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	3633	3803	1.000	+	0	ID=GTH_SGN_E_tom_match_part_16;Target=SGN-E290993 290 460 +;Parent=SGN-E290993_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	4343	4411	1.000	+	0	ID=GTH_SGN_E_tom_match_part_17;Target=SGN-E290993 461 529 +;Parent=SGN-E290993_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match	2951	3526	0.984	+	0	ID=SGN-E272292_alignment_2;Target=SGN-E272292 17 207 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	2951	3025	0.960	+	0	ID=GTH_SGN_E_tom_match_part_18;Target=SGN-E272292 17 91 +;Parent=SGN-E272292_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	3411	3526	1.000	+	0	ID=GTH_SGN_E_tom_match_part_19;Target=SGN-E272292 92 207 +;Parent=SGN-E272292_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match	3496	5399	0.998	+	0	ID=SGN-E346027_alignment_2;Target=SGN-E346027 1 685 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	3496	3530	1.000	+	0	ID=GTH_SGN_E_tom_match_part_20;Target=SGN-E346027 1 35 +;Parent=SGN-E346027_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	3633	3803	1.000	+	0	ID=GTH_SGN_E_tom_match_part_21;Target=SGN-E346027 36 206 +;Parent=SGN-E346027_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	4343	4456	1.000	+	0	ID=GTH_SGN_E_tom_match_part_22;Target=SGN-E346027 207 320 +;Parent=SGN-E346027_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	4673	4843	1.000	+	0	ID=GTH_SGN_E_tom_match_part_23;Target=SGN-E346027 321 491 +;Parent=SGN-E346027_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	5206	5399	0.995	+	0	ID=GTH_SGN_E_tom_match_part_24;Target=SGN-E346027 492 685 +;Parent=SGN-E346027_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match	4422	5627	0.968	+	0	ID=SGN-E690766_alignment_2;Target=SGN-E690766 1 624 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	4422	4456	0.771	+	0	ID=GTH_SGN_E_tom_match_part_25;Target=SGN-E690766 1 34 +;Parent=SGN-E690766_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	4673	4843	0.977	+	0	ID=GTH_SGN_E_tom_match_part_26;Target=SGN-E690766 35 205 +;Parent=SGN-E690766_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	5206	5627	0.964	+	0	ID=GTH_SGN_E_tom_match_part_27;Target=SGN-E690766 206 624 +;Parent=SGN-E690766_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match	4425	5627	0.973	+	0	ID=SGN-E690765_alignment_2;Target=SGN-E690765 1 622 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	4425	4456	0.938	+	0	ID=GTH_SGN_E_tom_match_part_28;Target=SGN-E690765 1 32 +;Parent=SGN-E690765_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	4673	4843	0.994	+	0	ID=GTH_SGN_E_tom_match_part_29;Target=SGN-E690765 33 203 +;Parent=SGN-E690765_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	5206	5627	0.964	+	0	ID=GTH_SGN_E_tom_match_part_30;Target=SGN-E690765 204 622 +;Parent=SGN-E690765_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match	4426	5627	0.961	+	0	ID=SGN-E694606_alignment_2;Target=SGN-E694606 1 620 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	4426	4456	0.968	+	0	ID=GTH_SGN_E_tom_match_part_31;Target=SGN-E694606 1 31 +;Parent=SGN-E694606_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	4673	4843	0.994	+	0	ID=GTH_SGN_E_tom_match_part_32;Target=SGN-E694606 32 202 +;Parent=SGN-E694606_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	5206	5627	0.948	+	0	ID=GTH_SGN_E_tom_match_part_33;Target=SGN-E694606 203 620 +;Parent=SGN-E694606_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match	4426	5627	0.965	+	0	ID=SGN-E694605_alignment_2;Target=SGN-E694605 1 620 +
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	4426	4456	0.968	+	0	ID=GTH_SGN_E_tom_match_part_34;Target=SGN-E694605 1 31 +;Parent=SGN-E694605_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	4673	4843	0.994	+	0	ID=GTH_SGN_E_tom_match_part_35;Target=SGN-E694605 32 202 +;Parent=SGN-E694605_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	match_part	5206	5627	0.953	+	0	ID=GTH_SGN_E_tom_match_part_36;Target=SGN-E694605 203 620 +;Parent=SGN-E694605_alignment_2
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	gene	2070	5627	.	+	0	ID=GTH_SGN_E_tom_gene_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	mRNA	2070	5627	.	+	0	ID=GTH_SGN_E_tom_gene_1_AGS_1;Parent=GTH_SGN_E_tom_gene_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	exon	2070	2155	1.000	+	0	ID=GTH_SGN_E_tom_exon_1;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	exon	2255	2311	1.000	+	0	ID=GTH_SGN_E_tom_exon_2;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	exon	2951	3025	1.000	+	0	ID=GTH_SGN_E_tom_exon_3;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	exon	3411	3530	1.000	+	0	ID=GTH_SGN_E_tom_exon_4;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	exon	3633	3803	1.000	+	0	ID=GTH_SGN_E_tom_exon_5;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	exon	4343	4456	1.000	+	0	ID=GTH_SGN_E_tom_exon_6;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	exon	4673	4843	1.000	+	0	ID=GTH_SGN_E_tom_exon_7;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C03HBa0192B12.1	GenomeThreader_SGN_E_tomato	exon	5206	5627	0.964	+	0	ID=GTH_SGN_E_tom_exon_8;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C03HBa0192B12.1	AUGUSTUS_tom_cdna	gene	1	5304	1	+	.	ID=g1_1
C03HBa0192B12.1	AUGUSTUS_tom_cdna	transcript	1	5304	.	+	.	ID=g1.t1_1;Parent=g1_1
C03HBa0192B12.1	AUGUSTUS_tom_cdna	CDS	1	100	.	+	1	ID=g1.t1.cds_1;Parent=g1.t1_1
C03HBa0192B12.1	AUGUSTUS_tom_cdna	CDS	324	400	.	+	0	ID=g1.t1.cds_2;Parent=g1.t1_1
C03HBa0192B12.1	AUGUSTUS_tom_cdna	CDS	1975	2155	.	+	1	ID=g1.t1.cds_3;Parent=g1.t1_1
C03HBa0192B12.1	AUGUSTUS_tom_cdna	CDS	2255	2311	.	+	0	ID=g1.t1.cds_4;Parent=g1.t1_1
C03HBa0192B12.1	AUGUSTUS_tom_cdna	CDS	2951	3025	.	+	0	ID=g1.t1.cds_5;Parent=g1.t1_1
C03HBa0192B12.1	AUGUSTUS_tom_cdna	CDS	3411	3530	.	+	0	ID=g1.t1.cds_6;Parent=g1.t1_1
C03HBa0192B12.1	AUGUSTUS_tom_cdna	CDS	3633	3803	.	+	0	ID=g1.t1.cds_7;Parent=g1.t1_1
C03HBa0192B12.1	AUGUSTUS_tom_cdna	CDS	4343	4456	.	+	0	ID=g1.t1.cds_8;Parent=g1.t1_1
C03HBa0192B12.1	AUGUSTUS_tom_cdna	CDS	4673	4843	.	+	0	ID=g1.t1.cds_9;Parent=g1.t1_1
C03HBa0192B12.1	AUGUSTUS_tom_cdna	CDS	5206	5304	.	+	0	ID=g1.t1.cds_10;Parent=g1.t1_1
C03HBa0192B12.1	AUGUSTUS_tom_cdna	stop_codon	5302	5304	.	+	0	Parent=g1.t1_1
C03HBa0192B12.1	AUGUSTUS_ab_initio	gene	3411	3839	1	+	.	ID=g1_2
C03HBa0192B12.1	AUGUSTUS_ab_initio	transcript	3411	3839	.	+	.	ID=g1.t1_2;Parent=g1_2
C03HBa0192B12.1	AUGUSTUS_ab_initio	CDS	3411	3530	.	+	0	ID=g1.t1.cds_11;Parent=g1.t1_2
C03HBa0192B12.1	AUGUSTUS_ab_initio	CDS	3633	3839	.	+	0	ID=g1.t1.cds_12;Parent=g1.t1_2
C03HBa0192B12.1	AUGUSTUS_ab_initio	stop_codon	3837	3839	.	+	0	Parent=g1.t1_2
C03HBa0192B12.1	AUGUSTUS_tom_ugs	gene	3411	3839	1	+	.	ID=g1_3
C03HBa0192B12.1	AUGUSTUS_tom_ugs	transcript	3411	3839	.	+	.	ID=g1.t1_3;Parent=g1_3
C03HBa0192B12.1	AUGUSTUS_tom_ugs	CDS	3411	3530	.	+	0	ID=g1.t1.cds_13;Parent=g1.t1_3
C03HBa0192B12.1	AUGUSTUS_tom_ugs	CDS	3633	3839	.	+	0	ID=g1.t1.cds_14;Parent=g1.t1_3
C03HBa0192B12.1	AUGUSTUS_tom_ugs	stop_codon	3837	3839	.	+	0	Parent=g1.t1_3
C03HBa0192B12.1	AUGUSTUS_tom_pot_cdna	gene	1	5304	1	+	.	ID=g1_4
C03HBa0192B12.1	AUGUSTUS_tom_pot_cdna	transcript	1	5304	.	+	.	ID=g1.t1_4;Parent=g1_4
C03HBa0192B12.1	AUGUSTUS_tom_pot_cdna	CDS	1	100	.	+	1	ID=g1.t1.cds_15;Parent=g1.t1_4
C03HBa0192B12.1	AUGUSTUS_tom_pot_cdna	CDS	324	400	.	+	0	ID=g1.t1.cds_16;Parent=g1.t1_4
C03HBa0192B12.1	AUGUSTUS_tom_pot_cdna	CDS	1975	2155	.	+	1	ID=g1.t1.cds_17;Parent=g1.t1_4
C03HBa0192B12.1	AUGUSTUS_tom_pot_cdna	CDS	2255	2311	.	+	0	ID=g1.t1.cds_18;Parent=g1.t1_4
C03HBa0192B12.1	AUGUSTUS_tom_pot_cdna	CDS	2951	3025	.	+	0	ID=g1.t1.cds_19;Parent=g1.t1_4
C03HBa0192B12.1	AUGUSTUS_tom_pot_cdna	CDS	3411	3530	.	+	0	ID=g1.t1.cds_20;Parent=g1.t1_4
C03HBa0192B12.1	AUGUSTUS_tom_pot_cdna	CDS	3633	3803	.	+	0	ID=g1.t1.cds_21;Parent=g1.t1_4
C03HBa0192B12.1	AUGUSTUS_tom_pot_cdna	CDS	4343	4456	.	+	0	ID=g1.t1.cds_22;Parent=g1.t1_4
C03HBa0192B12.1	AUGUSTUS_tom_pot_cdna	CDS	4673	4843	.	+	0	ID=g1.t1.cds_23;Parent=g1.t1_4
C03HBa0192B12.1	AUGUSTUS_tom_pot_cdna	CDS	5206	5304	.	+	0	ID=g1.t1.cds_24;Parent=g1.t1_4
C03HBa0192B12.1	AUGUSTUS_tom_pot_cdna	stop_codon	5302	5304	.	+	0	Parent=g1.t1_4
C03HBa0192B12.1	BLAST_ath_pep	match	3408	3836	172	+	0	ID=AT1G17470.1_fwd_alignment_1;blast_gaps=2;Target=AT1G17470.1 176 282 +;blast_match_length=428;blast_percent_identity=62.94;blast_mismatches=53;blast_evalue=4e-42
C03HBa0192B12.1	BLAST_ath_pep	match	1967	2326	138	+	0	ID=AT1G17470.1_fwd_alignment_2;blast_gaps=2;Target=AT1G17470.1 70 155 +;blast_match_length=359;blast_percent_identity=65.83;blast_mismatches=41;blast_evalue=5e-32
C03HBa0192B12.1	BLAST_ath_pep	match	3408	3836	172	+	0	ID=AT1G17470.2_fwd_alignment_1;blast_gaps=2;Target=AT1G17470.2 176 282 +;blast_match_length=428;blast_percent_identity=62.94;blast_mismatches=53;blast_evalue=4e-42
C03HBa0192B12.1	BLAST_ath_pep	match	1967	2326	138	+	0	ID=AT1G17470.2_fwd_alignment_2;blast_gaps=2;Target=AT1G17470.2 70 155 +;blast_match_length=359;blast_percent_identity=65.83;blast_mismatches=41;blast_evalue=5e-32
C03HBa0192B12.1	BLAST_ath_pep	match	3408	3836	171	+	0	ID=AT1G72660.1_fwd_alignment_1;blast_gaps=2;Target=AT1G72660.1 176 282 +;blast_match_length=428;blast_percent_identity=62.94;blast_mismatches=53;blast_evalue=6e-42
C03HBa0192B12.1	BLAST_ath_pep	match	1967	2326	138	+	0	ID=AT1G72660.1_fwd_alignment_2;blast_gaps=2;Target=AT1G72660.1 70 155 +;blast_match_length=359;blast_percent_identity=65.83;blast_mismatches=41;blast_evalue=5e-32
C03HBa0192B12.1	BLAST_ath_pep	match	3408	3836	171	+	0	ID=AT1G72660.2_fwd_alignment_1;blast_gaps=2;Target=AT1G72660.2 176 282 +;blast_match_length=428;blast_percent_identity=62.94;blast_mismatches=53;blast_evalue=6e-42
C03HBa0192B12.1	BLAST_ath_pep	match	1967	2326	138	+	0	ID=AT1G72660.2_fwd_alignment_2;blast_gaps=2;Target=AT1G72660.2 70 155 +;blast_match_length=359;blast_percent_identity=65.83;blast_mismatches=41;blast_evalue=5e-32
C03HBa0192B12.1	BLAST_ath_pep	match	3408	3836	171	+	0	ID=AT1G72660.3_fwd_alignment_1;blast_gaps=2;Target=AT1G72660.3 176 282 +;blast_match_length=428;blast_percent_identity=62.94;blast_mismatches=53;blast_evalue=6e-42
C03HBa0192B12.1	BLAST_ath_pep	match	1967	2326	138	+	0	ID=AT1G72660.3_fwd_alignment_2;blast_gaps=2;Target=AT1G72660.3 70 155 +;blast_match_length=359;blast_percent_identity=65.83;blast_mismatches=41;blast_evalue=5e-32
C03HBa0192B12.1	BLAST_ath_pep	match	1967	2158	105	+	0	ID=AT4G39520.1_fwd_alignment_1;blast_gaps=0;Target=AT4G39520.1 73 136 +;blast_match_length=191;blast_percent_identity=81.25;blast_mismatches=12;blast_evalue=6e-22