C03HBa0192B12.1 AAGCTTAATAATTGACTTCAATTGTCATGCAGAATATCATTTGGGTCAGCTGAAGGCTAA GATAGCAAAGCTGAGGACACAATTGTTAGAGCCCCCCAAAGTATGTCTTTTTTTGTATTT TAACTGTTAATTGGGAGGGGTCAATTTTCTGTTATCTTAGTCTCATGGAGTTCCCATGAT ATAATTGTGTCGTATATTACCATATCAACAATAAATAGTTGTACTCTACTAATTATTTTT TCCAGTGGCGACCACCTTTTCTCATGTTCTTGTGTTTTTCTGATAGACCAAGCAATAACT TCCTGATTACGCCTGTAAAATAGGGTTCTAGTGGTGCTGGAGAAGGTTTCGAAGTTACAA AATTTGGCCATGGACGTGTTGCACTGATAGGATTTCCAAGGTTTGTCATTTCCCTTTTTT CGTGATTTTCGGCCAGTCATTAAAGTTGAATTGTCATCAGGCAGAACAATTTCCAAAGCA TTTGATATACTCATAGTTCCGACTTCTGATGTGTTTATGTAATTGAACCATTAATTACTT TTGATCACTTCTTATAGTTTTTGATTTCCTTCCTTGGTAAGATATATTGAACTTTAGTAA CTGAAGATGCTGATGCCTGATGCTCTTTGACATGAGATTTAGCATGGAAGAACATATAAA TAGTGTTAACTTAATCTGAATCTTGGTGACTTTAAGTGACATTGTAAGTACGCCCAGTTT GGTAATGGGAGTAGAAGGTTGATCCTCATCATTTAACTATTTTACTAATGCCCCCTTTCT AATATTTTAGGCGAGGAGAACTGGGCATGATTTTAAACTAAGACATAATAACTGATCCTA TGTGGTAGTGAGGCACACTATTTCAGTCTGCACTTGCCTTAACTACATGCACCATGGTGT CGTAGTATTTGGTTAACTTGTTTGAGAACTGCTTTCGTTAGTAGTTTGTGTTTTGCCAAA ATTCTTTTGAAGAAGCGTTTCTAAGTTATAACTTGCGAAAAGAAAATGCATATAAGTTGG CACCTATTAATCAATTAGAAAATTGGCTCACAAATATTGGTTAAAACACTTATTTTCTGG TAGTAAATTTGTCTAATTTCAATAAGATATGGGCATCATTAAAAGATAAATATTCTCTAA ATAGATAAATAAGCTTGCATGTTATGATTTGTAACTCCTGACTTAGTTTAACAACTCTTA AATTTAACACCAATAAGTTTCAGTGGAACTAAAAAGAAAAGAGTCCGAGCTCTTTTTTTT TTTTGGTTGACTTTGGCTATGAGCATGTATCCCAAAGTGACGTATAGTTTTTGGTAATGG GTATACTCGAGAGAAAAGGTTTGGAATTCTACCTCCCCTTATACAGCAGCTTTGTGGTGG ACCAGTGACCACCACATTGACCTGTGGTGGTGTTTGTTATCAAGTCTTGCCCTAAACTTT AAGAACAGACAAAGAAATCATGCAACACAATCTATTTACATTATCTACATTTCTATTAGG TTCCATATTTTATCTTTCCATACTCCCCCCTCCTTGTAGCTAGTTCAACAAAAAGCCTTT AGATCGAGATTCACAACAATGCATCACAACTATGGATTCCAATTATTCATCTCAAGATTT TGATTCATCCACTTGGAATTTTAAAACTAAAATAGGTTGGGTAAGCTTGCAAATTCACTT AGTCTCATTGTAAGTGTGGGGCAAACGGCGCCCTCTACTTCTGCAGTTCTACTTCTAACT AAAGGCTTACTACAGGCATTGCAAGCAAATAGAAAGCCCCCACCCGTTTGAGCCGTAAAG CACCTACATGTTGTCATTAAAAAGGGAGTGATTTAAAAAGCTTGCAAAATAAGGAGAGAT TTCAAAAGCATGTAAAATAAGTGTTCTTTATTTTATCTTTTCACCATTGTTGTAGACATT TCAAAAGTTTGTCCAGATAGGCTATTAACCTTCTTTGGTTTTTCTTTTTGTTAGTGTGGG AAAGTCTACACTCCTTACAATGTTGACAGGAACACATTCTGAAGCTGCATCATATGAGTT CACAACACTTACTTGCATCCCTGGTATTATCCATTACAATGATACTAAAATTCAATTGCT TGATCTTCCGGGAATCATTGAAGGTGCATCTGAAGGCAAGGGTCGTGGTAGGCAGGTACA TTGAAGATGGCTTTAGCAAATTGACAAACAATTTATGTTGTAATTTGTATAGTTGCTGGC GCTACAATCTCTGAACAATAGTCATTTTAAACAGGTCATTGCTGTTTCTAAGTCAGCGGA CATTGTATTAATGGTTCTCGATGCTTCAAAAGTAAGTGATGATCATTGTGCCTGTTGAGG TTTATTTTTATCCTCTTTTGGTCATATTCGTTTCGTTACAATTGCACCTCAGCCCCGCCC AAGCTCAGGCTGTACTAAATTAAGCTGCTCTGAGCCCGCCTCAATCCTTGTAGCAGAGTC GAGCTTGGGCTGAGTTGGCACGGCCAGAGTTGAAGGTGAAAGTGTCATTGAAAAAAAACC AAATAACTAAAAGAAATGAAGTTGGTCTGTTTCTCAGCTGGTGAACACCTGGGGATGATC CCTCTATATATGCTCTCACCTATTAAAAAACTAATTATGCTTGGTAATACAGAAAAAAAT TACAAACAGCATAATATTATATGACCCAAAAAACATAGTACATATTGTTCTCTGATCTCA GTGGTATAGAGAAGAAACAGAAAAAGAAGGCACACCGCACACATGGTACGAAAAAATGGA AAATTATAAAAGAAGAGTTTGTTTGGGTTTATATTCTCATTTCCAGCATTAATCTCGAAG AATATCAATGTTTCATTACATGTTAAATTGAAATTAGAATTAAGTCATCTCTCTGTCCAG ACTTTCTGTTAGCTTATGCTTTCTTTTTTTTGTTGATTCACTCGAGTCTTAATTAAATAT ACAACATCAGAGTGAAGGCCATCGGCAAATATTGACAAAGGAGCTGGAAGCGGTGGGCCT GCGACTAAACAAGAAACCTCCTCAGGTGATCCATTATGCTATGTTATTCATATTGCGGTT CTGTGTCCTTGTTCTGATAACATATATATATATATTCATTTGTCTCCTTTTCTCTATCTG TTTTTTTTATTCCATTGACTTCCACATGTTTCTAGAAGTTCTCTTCAATAGTTAATAGCT TATTCGCACTACTAGCCTGCCATATCATTATTGCACTTTTATAGATCTTGGTTCCTTCCT GTCCTTAAGTAGTTATCGAGAAAATGTTCTTCTCACAATGTTTCTGTCTAGAAGAGACTT TTTCGTGGTATTTAAAATGTTAATTTAAAATCCATGCCATCATTGGTTGTGTATCTTCCG ATGGACCAGATTGATTTCAGGGCTTAACTTAAATTGTGCAATGGTTGCAGATATACTTCA AGAAGAAAAAGACTGGTGGAATTTCTTTCAATAGCACTCTGCATCTGACACATGTGGATG AGAAGCTATGCTATCAAATACTGCATGAATACAAGATCCACAATGCTGAGGTATTGTAGA ACGTGGGATTTTTATCATTGAGAAACTCCAGTTTGAATTTTTTTCTTCTGCTTTGTTTCT CTACCTTATTGTCTTTTTGTTCACCTTTTTAGGTGTTATTTCGTGAAGATGCCACAGTGG ATGACCTTATTGATGTTATTGAGGGCAATCGTAAATACATGAAGTGCATATATGTCTACA ACAAGATAGATGTTGTTGGTATTGATGATGTAGACAGATTAGCCAGACAGCCAAACTCTG TTGTCATCAGCTGCAACATGAAGGTATTTCAAAATTTTGTGAGATTCATTAGCAGATGAG ATGAGCTATAGCATGTTTTGGTGACCCATAAGCTCATTGCTCTTATCTAATTTTGTGTCA AGGTACTACAATCATTATAATTCGTTGTTATTGGACATTTGCAAACATATATATTGGTTC CAAGATCAAATAACATATTTGGGTGCGCATAAAGTTAATTGCAGCTCATGATAGTATATG AAGTCTTTCTTTTGCGTGGCTCTGGAGAATTTCCAAAACTTGGTTTGACCAGGAGAATCT TCTTACCTGTAGTTTATCCTTCTGCAAATAAGAACACTCTTATGGTCACTAAGATACTTC CAAGTTGGTTTTTGATCTTGATGATGGAACAGAAAAGATTTACTTTGTTTTCCTTTGCCC GATTTGGACATGGCTTTTGAATAATGGGTTCACTTCCTCTGATTTTTGAATTTGGCAAAC GATCTCTACATACTGACATGCTCTTTAGAAGTTTCCTGCATTGTCTATATAGTTAATGTT TGCATTTATTTTAATGATACAGCTGAATCTGGATAGATTGCTTGCAAAAATGTGGGAAGC GATGGGTCTTGTCAGAGTTTACACAAAGCCTCAAGGCCAGCAACCAGACTTCACAGATCC AGTGGTGCTTTCTGCTGTATGTTATGTTGCAGATCATGCTTGAAGATTCTCTTCTTTTTT TTTCCATGCTTGGTTACTCTAGAAATTTCATTCACTGATCATAGATTGGTGGAGATGGTT TCATGTTAAAAATAGTAACTTGAGAACCCCCACAGAGGGAAAGAATTAATTTCCTGCTCA TTACTTTTCTCTAATTGTGTTGATGCATCTTCTTTGTTGTTAATGATTTTAGGATAGAGG TGGCTGTACGGTAGAAGATTTCTGTAATCACATACATCGGAGTCTTGTTAAGGATGTGAA GTATGTGTTGGTTTGGGGTACTAGTGCAAGGCACTCCCCCCAGCATTGTGGCCTTGCTCA AATGCTTGAGGATGAAGATGTGGTGCAGATTGTTAAGAAAAAGGTAAAGGATTTCTGCTT GTGCTTTTCACATTTGCTCTCCATCAATAGTGTTATCAGCTCTGGCATATCGAGCTATTT CTTCTGGCCATCATATTCACAGGTGTATAAGCTTCATGATCATATGGTGATTTGGCATTT CTTCAGGCAACATGCAATGCCATTAGCTTCTTTCTAGTCTAATTGCATAGGAATTTGTGT CACAGAAGTATGAGTGGTCTTATCGACCAAAGCACCCAGGATGAGGAAGTTAGGACAGCT AAGGTTAAGATGTATAGAGGTGTAGTTTGGTGCCAATGTCATCAAACTAGGTGTTCCAGA GAAAGTTGATGCCTGTGATGCTCACAAATAGTTTACGTTATGCAGGAGAAGGAAGATGGA GGAGGTAGAGGCCGATTCAAATCACATTCTAATGCTCCTTCTCGTATATCTGACCGTGAA AAGAAGGCTCCATTGAAGACCTGATTGAGCCAGATAGTGGCGCTGCTAGTTCTATATGCT GATCTGGTAGGATCCATGTGCCAGGTATTACTATTGAAGAATGAGCTATACAATGAGAAT AGCTAGAGTTTTTTCAACTTTATGAAGTGAAACCTATTTATCAGTAGTGGCTCGAAGATT TCAGTGTTGTATTCTATATTTGATCATGTTACAACCCTAGAGTAAGTACAATATCTGGGG ACATGCTTTTTTCCTCCAGATAATATTAACTGCCGTTCATTTGTGAAATGTGAGATAAAA AGTTTTGGTCTTGGATCCTGAAAGTGTCAATGCGTTAATAATTGGATATCTTAGCTTCAT GTTATCTGCAGTCGAATTGAGTAACTGCAAGCTTGTTCATCGTTGGAGAAGTGTATTTTA AGGACTACATGCCAATGCAGGTTAGATGAATATTCTTTTCGTTGGATTTAGTGAACTTGA CATTCTTATAATTCGACAGTCCGTATTAGTGTCGGACTATAATTTCCGTTGTGATAATTC ACAAATAGCCAACTTTAAACTCTTTAGGTGCAATTTCAGGACATTATTATCGTGGAGTTT TACCTTTGGAATCTGAAACCTTCTTAAAACTCCATGACAATATGGCTACTTTTCACTGTT TCTACTCTTTATTGCTTATTCAAACATTTGGACTTTAGAAGTCGAGAACTGGAAATGGGC CGACCATCACATGCATCCCTCGATTAATGTAGTCATCTTGTTTAACTCCACTGTGAGTCG TTGAATAGCAAGTTAGCAACAATATAGTTAGTATAATTTCATAAGTGTAGTCTAAGATGG GTTATGTGTATTGAGTTTTGTTCCTACTTTATGAAAGTAGATAAGACGGTTTTGATGGCA TTCTTGGCATGAATTGTAGAATTTATTTTTAAAATTTAATGAAGACTGAGATTAGTTTTT TCGCTAGATTGTAGTTTCTTGTTGTTTGCCCAATAGTTCTCAAAGACATTACTTATAAGT ATGTCCTTATAACTTTAACTCAACTAGTATCTATACCCATAAAATGTTTGAGTGTAGTGC ATGAGTAGACACTTAAATTTGTATTAAATAAATCAAGTGGATATACTGATGCGTACGGTA CGACGTAGATGTGTATATTTATTTTTTCTAACTTAATACAAATTTGAGTCAATGCACACC CTAGGATGTGTATGTTTACTTTTTCTAACTCTATAGAAATTTGAGTCAATGCACACCCGG AAGATAGATCAAATTATATGAACACTTTATTTATGTATGTTTTTTATTTTTCAAATGAAC CGAATTTGTGTACAGTAGCTTAAAGCATAGGAAAAGTCGGCAAGTCCAAGAAAGGGGCCT AACTTATCATGCCTAAAATTTTGTGTATGAAAACAGTGAACAAGACAGGTAACCAATGGA GTATTTCTTCTTTTTTCAGTAATTATATTTGGGGGTCAGTGCTTTCGTGCATGTCAGGTA ATTCTTTATAATAAAATCATATAGCTAGCATATAGTATATATATGTGGGGATATCGATCA CTTTAGATTGCTGAGGAAGTGGTTAACGTCCAATCATTCTTGTCTAGTCTCTATCCCTAT TCATAGTGACTTTCCCTTTTACATTTTTGAGTAGGGTTTCACTTTCCTACACTTAACAAT TCTCATAGAACTACTTGAGGTTAAACAACATATTTAGTATAATTTCACAAATTGAATTTG ATGGGCGAAGAATATTGCGTATGCGAGCGTTACTTGAGAGGTAGATAGACACTTTAATTT GCAGTAGACCACCAACTCAAGAAGTTGGGGATAAAAAATTAACCCAAGTAAAAGAAGGTA TAGCAATCAAAATGTTGCATTAATTATTTTCTAACCCCTCCAACCAAAAACATTGTACAA TGTTTTCCTGCAGGAAAATGGCCTTTTAATGTTTTGTTGCTTAGTACTACTACGTAGGAG TACTAAACTAGACTGAAAAATACTCACTCAGTTAGGTGGAAACAAGTTCACATAATAATT ATTTGAAAGTTACAGAGGCCGAATATTTAGGTAAATATAAATGATGGAGTTGCGAGTTTT TAATTCAAAATTAAATGCCTTTCATGTTTGTTTGTTTTTTAGCATAATGCATAGATATAA ATCCTAACTTGACCTCAACAACTAATTATACATACACTTCAACTTGGAGTATTACTTCTA GACATTTTCTATTTTCATTGTGTCACTTGAACACTCTAGAATTTGTGTATATCACGTCAC CGTTGGTGTCCACAAAACACAATGAAGATGAATTCATTAGAGAGTTCAGTAGTCAGTTGA AATCAAATTAAAATATATGACACTTTCAAAATTGTTTGCCTAATCAAGTTTGAATGTCTA ATTACTCCCTTTGTCTCATTTTGTATTATGTAGTTTAAGAAAAAAAGAATAACTTATGAA ACTACCGGTATGGCCAAGTATTTTATGATTAAATAATTAATGAACATAGAAATATATATA TTTTAGATAGTTATAAGAAACTAATGAGTCGTATAAATTGGAACGAAAGAAGTATGTGTT GTGCCTTTTTTTTTACTCGAAGAAAATCTGACATTGAGAATTATTGTCCCATCAAAATCA GATCAAAGTTAGTGGAAGTCATTTATAAAACATGATGTCGGGTTCCTCAAAAATTACTTC TACTATAATTTAGTTATGTTTAATTAATACGGGTAGTACGTTACCATCAATCACTAGAAA TGAAATAAAATAAAATCAAACTAGTCATCATAATATAAATGAGAAATTATATAATATAGT AATATCTGTATACTCATGACTCTAAACCCTAAGTTGCATGGGCAATATACTAGTGGGACA CTCAATTTTATTCTCTTCTTTGAGAAATCTTATCTCTTCTTTCACGGAAATAAAGTTAAA TGCTTTTTAACTTATTATAATTATGAGAAATATTTCCTAAAATGATAAATTTCAAAAATA AATAGCTTTAACTGATAATATGTCAAATCATGTTTGAAATAATATAAAATAAGTAACATG TATATACTATAGAGGGGGATAGTTTAATATAACTATTTTTTTTAGATTCATATACCCACC ATGAAATATTCATTAGTGAGATAAATTATGAATTAAATGCATCTCTCTCTTGTCTATTTT AATTTCTTAAAACCAAACGTGTGATTGCAATTGTCAATCTTTGCTTGCATTTTCAATTTT CAATTACAAACAGTTGACACATTAGACTGCGACATGAGAGCCAGTAACACTAGACAAGCA GACAATAGATATTGGTAAAGATTAATTTAAGATTTTACGTTTATGAGTTTTGAATTTTAG AACAAAACGACGACTAGATTCAAACATTAAAAGTCGTCTATTAGTTGTACTTAATTAGCC CGTATACAATCATCCTATGTAGAGCAATAAGCTT GenomeThreader_SGN_E_tomato_potato SGN Combined Tomato and Potato ESTs GenomeThreader_SGN_E_tomato_potato SGN Combined Tomato and Potato ESTs match_1 match_part 1.000 2070 2155 match_part 1.000 2255 2311 match_part 1.000 2951 3025 match_part 1.000 3411 3530 match_part 0.970 3633 3665 match_2 match_part 0.938 2075 2155 match_part 0.895 2255 2311 match_part 0.853 2951 3025 match_part 0.900 3411 3530 match_part 0.924 3633 3803 match_part 0.930 4343 4413 match_3 match_part 0.979 2108 2155 match_part 0.982 2255 2311 match_part 0.960 2951 3025 match_part 0.992 3411 3530 match_part 0.971 3633 3803 match_part 0.965 4343 4456 match_part 0.944 4673 4761 match_4 match_part 1.000 2119 2155 match_part 1.000 2255 2311 match_part 1.000 2951 3025 match_part 1.000 3411 3530 match_part 1.000 3633 3803 match_part 1.000 4343 4411 match_5 match_part 0.960 2951 3025 match_part 1.000 3411 3526 match_6 match_part 1.000 3496 3530 match_part 1.000 3633 3803 match_part 1.000 4343 4456 match_part 1.000 4673 4843 match_part 0.995 5206 5399 match_7 match_part 0.965 4343 4456 match_part 0.988 4673 4843 match_part 0.922 5206 5600 match_8 match_part 0.771 4422 4456 match_part 0.977 4673 4843 match_part 0.964 5206 5627 match_9 match_part 0.938 4425 4456 match_part 0.994 4673 4843 match_part 0.964 5206 5627 match_10 match_part 0.968 4426 4456 match_part 0.994 4673 4843 match_part 0.948 5206 5627 match_11 match_part 0.968 4426 4456 match_part 0.994 4673 4843 match_part 0.953 5206 5627 match_12 match_part 0.906 5447 5616 gene_1 gene GT_PGL_1_AGS_1 transcript source GenomeThreader seq_id C03HBa0192B12.1 type gene exon 2070 2155 exon 2255 2311 exon 2951 3025 exon 3411 3530 exon 3633 3803 exon 4343 4456 exon 4673 4843 exon 5206 5627 RepeatMasker tomato repeats master TLP2 15 253 1 TLP2 15 253 1 nucleotide_motif 322 6295 6542 RepeatMasker tomato repeats master Copia00110 2601 2724 -1 Copia00110 2601 2724 -1 nucleotide_motif 308 6406 6277 BLAST_tomato_bacs Tomato BAC sequences BLAST_tomato_bacs Tomato BAC sequences match_1 match 4472 1151 3577 match_2 match 8492 3643 8037 match_3 match 2250 1 1156 match_4 match 2238 1 1150 BLAST_tomato_bac_ends Tomato Combined Clone-end Sequences (BACs and Fosmids) clone_1 clone 1117 2 8710 clone_start_1 clone_start 1302 2 683 clone_start_2 clone_start 1415 1664 2389 clone_start_3 clone_start 1336 1839 2568 BLAST_tomato_bac_ends Tomato Combined Clone-end Sequences (BACs and Fosmids) clone_end_1 clone_end 932 8710 8209 clone_end_2 clone_end 1390 1119 419 clone_end_3 clone_end 1405 1133 425 clone_end_4 clone_end 1150 1116 509 clone_start_4 clone_start 565 3025 2717 clone_start_5 clone_start 1493 7563 6791 GenomeThreader_SGN_E_tomato SGN Tomato ESTs GenomeThreader_SGN_E_tomato SGN Tomato ESTs match_1 match_part 1.000 2070 2155 match_part 1.000 2255 2311 match_part 1.000 2951 3025 match_part 1.000 3411 3530 match_part 0.970 3633 3665 match_2 match_part 0.938 2075 2155 match_part 0.895 2255 2311 match_part 0.853 2951 3025 match_part 0.900 3411 3530 match_part 0.924 3633 3803 match_part 0.930 4343 4413 match_3 match_part 1.000 2119 2155 match_part 1.000 2255 2311 match_part 1.000 2951 3025 match_part 1.000 3411 3530 match_part 1.000 3633 3803 match_part 1.000 4343 4411 match_4 match_part 0.960 2951 3025 match_part 1.000 3411 3526 match_5 match_part 1.000 3496 3530 match_part 1.000 3633 3803 match_part 1.000 4343 4456 match_part 1.000 4673 4843 match_part 0.995 5206 5399 match_6 match_part 0.771 4422 4456 match_part 0.977 4673 4843 match_part 0.964 5206 5627 match_7 match_part 0.938 4425 4456 match_part 0.994 4673 4843 match_part 0.964 5206 5627 match_8 match_part 0.968 4426 4456 match_part 0.994 4673 4843 match_part 0.948 5206 5627 match_9 match_part 0.968 4426 4456 match_part 0.994 4673 4843 match_part 0.953 5206 5627 gene_1 gene GT_PGL_1_AGS_1 transcript source GenomeThreader seq_id C03HBa0192B12.1 type gene exon 2070 2155 exon 2255 2311 exon 2951 3025 exon 3411 3530 exon 3633 3803 exon 4343 4456 exon 4673 4843 exon 5206 5627 AUGUSTUS_tom_cdna de novo AUGUSTUS_tom_cdna de novo gene_1 gene 1 1 5304 transcript_1 transcript 1 1 5304 intron_1 intron 1 101 323 intron_2 intron 1 401 1974 intron_3 intron 1 2156 2254 intron_4 intron 1 2312 2950 intron_5 intron 1 3026 3410 intron_6 intron 1 3531 3632 intron_7 intron 1 3804 4342 intron_8 intron 1 4457 4672 intron_9 intron 1 4844 5205 CDS_1 CDS 1 1 100 CDS_2 CDS 1 324 400 CDS_3 CDS 1 1975 2155 CDS_4 CDS 1 2255 2311 CDS_5 CDS 1 2951 3025 CDS_6 CDS 1 3411 3530 CDS_7 CDS 1 3633 3803 CDS_8 CDS 1 4343 4456 CDS_9 CDS 1 4673 4843 CDS_10 CDS 1 5206 5304 stop_codon_1 stop_codon 5302 5304 AUGUSTUS_ab_initio de novo AUGUSTUS_ab_initio de novo gene_1 gene 0.19 324 5304 transcript_1 transcript 0.19 324 5304 intron_1 intron 0.78 1 323 intron_2 intron 0.62 401 1974 intron_3 intron 1 2156 2254 intron_4 intron 0.65 2312 2453 intron_5 intron 0.61 2496 2950 intron_6 intron 0.81 3026 3410 intron_7 intron 1 3531 3632 intron_8 intron 1 3804 4342 intron_9 intron 0.84 4457 4672 intron_10 intron 0.54 4844 5205 CDS_1 CDS 0.9 324 400 CDS_2 CDS 0.65 1975 2155 CDS_3 CDS 1 2255 2311 CDS_4 CDS 0.65 2454 2495 CDS_5 CDS 0.81 2951 3025 CDS_6 CDS 1 3411 3530 CDS_7 CDS 1 3633 3803 CDS_8 CDS 0.97 4343 4456 CDS_9 CDS 0.61 4673 4843 CDS_10 CDS 0.96 5206 5304 stop_codon_1 stop_codon 5302 5304 AUGUSTUS_tom_ugs de novo AUGUSTUS_tom_ugs de novo gene_1 gene 0.18 2000 5304 transcript_1 transcript 0.18 2000 5304 start_codon_1 start_codon 2000 2002 intron_1 intron 0.88 2156 2254 intron_2 intron 0.54 2312 3410 intron_3 intron 1 3531 3632 intron_4 intron 1 3804 4342 intron_5 intron 0.92 4457 4672 intron_6 intron 0.7 4844 5205 CDS_1 CDS 0.43 2000 2155 CDS_2 CDS 0.88 2255 2311 CDS_3 CDS 1 3411 3530 CDS_4 CDS 1 3633 3803 CDS_5 CDS 0.93 4343 4456 CDS_6 CDS 0.7 4673 4843 CDS_7 CDS 0.96 5206 5304 stop_codon_1 stop_codon 5302 5304 AUGUSTUS_tom_pot_cdna de novo AUGUSTUS_tom_pot_cdna de novo gene_1 gene 1 1 5304 transcript_1 transcript 1 1 5304 intron_1 intron 1 101 323 intron_2 intron 1 401 1974 intron_3 intron 1 2156 2254 intron_4 intron 1 2312 2950 intron_5 intron 1 3026 3410 intron_6 intron 1 3531 3632 intron_7 intron 1 3804 4342 intron_8 intron 1 4457 4672 intron_9 intron 1 4844 5205 CDS_1 CDS 1 1 100 CDS_2 CDS 1 324 400 CDS_3 CDS 1 1975 2155 CDS_4 CDS 1 2255 2311 CDS_5 CDS 1 2951 3025 CDS_6 CDS 1 3411 3530 CDS_7 CDS 1 3633 3803 CDS_8 CDS 1 4343 4456 CDS_9 CDS 1 4673 4843 CDS_10 CDS 1 5206 5304 stop_codon_1 stop_codon 5302 5304 BLAST_ath_pep AGI Proteins (arabidopsis.org) BLAST_ath_pep AGI Proteins (arabidopsis.org) match_1 match 172 3408 3836 match_2 match 138 1967 2326 match_3 match 172 3408 3836 match_4 match 138 1967 2326 match_5 match 171 3408 3836 match_6 match 138 1967 2326 match_7 match 171 3408 3836 match_8 match 138 1967 2326 match_9 match 171 3408 3836 match_10 match 138 1967 2326 match_11 match 105 1967 2158