<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 07:28:08"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594980" ref_strand="+" ref_description="SGN-U594980 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157349251|emb|CAO24397.1| (e_value=5e-28) unnamed; (*ATH) AT1G01930.1 (e_value=5e-22) | Symbol: None | zinc finger protein-related, contains Pfam PF00023: Ankyrin repeat; contains Pfam PF00096: Zinc finger, C2H2 type domain and Prosite PS00028: Zinc finger, C2H2 type, domain | chr1:319836-322860 REVERSE | Aliases: F22M8.6, F22M8_6; ">
      <seq>tttaataaacgcatcgggtcaccgaaacaaagcaccgctcgatcttcctattaccaactaacttctttgattcctgccgccttctccaatctccatgaaactttccactctccatactctaaccactccaaagtctctcagtcaaaaccctagacgacgtagacattgatgacaaatccaaaaaggaagtggagaatacggagagtttgagtagtatgaataaccccaaacaaaggtggtcttgcaatacttgtaaggccgagtttgagtctctccatgaccagcgttctcacttcaaatccgatattcatcgactaaatataaagctaagcatttctgggagagacactattaaggaagaagactttgatgagatgacatctgattccctatgtaaggattatgatttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="-" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="4309" stop="2281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4027" g_stop="3708" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3707" i_stop="2673" i_length="1035">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.536" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2672" g_stop="2581" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="412" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="-" ref_id="SGN-U594980" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4027" e_stop="3708"/>
          <exon e_start="2672" e_stop="2581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTGAAGCAACAAATCGACGAAAAAAAGCACCGTTCGATCTTCGAATTACCAGCGAACTTCTTTGATTCCTGCCGCCTTCTCCAATCTCCGTCAGCTTCGCCACTCTCCATAGTCGAACCACTCGAAAGTCTCTCAGTCAAAACCCTAGACGACGTAGACATTGATGACGAATCCAAAAAGGAAGTGGAGAATACGGAGAGTTTGAGTAGTAGGAATAACCCCAAACAAAGGTGGTCTTGCAATACTTGTAAGGCCGAGTTTGAGTCTCTCCATGACCAGCGTTCTCACTTCAAATCCGATATTCATCGACTAAATGTACTATTCTTCTCCCCTCTCTTTTTTCCCTGATTATGTTATTCCATAAAATTTACGAGCTTGACCTGCACAGAACATAATGGATAATAGAGGATTCAATAGCTGATTCCAACTGATTTGGGATTGAGGCATAATTGGTTGATTTTTAATCTGTCCTTCTTAGGACACACTATTAAGGGCGAGGATTTTGTAAGTGAAAGATAAAATAAAAAGTTACTATAGTTCTTGAAGTTGGCAATTGCTACGAATAGCACCTTGCCGTCCATCAGGCTGATAACTTGTGAAAATTATGGTTTTGATCTTTATAATCGGACTCAAAAGATCTTTTCTTTTGTTGGGTTAAGCTCAACTTATTGCTAGTAGTCAACGGTACTTGTTTTTCCTTTTATGTTCAAATTTATTTATTTTCTTCTTTTCTGATAACCACTAACATCAGTTAGTGGTATCTAAAGAAAGAAATTTGGAGATGTATTCACAAGACAGAAAGCAAAATCATTTTCTTTAGATATTTTTGTCTAGTACTTCAGTTAAACGAGTATTCATATAGGTAAGGTTAGCCCTTTGGAACTAGCAACTTTTAGATAATATCCCAATACTTGTTGCTCTTTGCTTGTAAAATAAGCTAAAATAGGCTGATAACATATCACTAGTAGAGTTTAGGAGTTGCGGTTACGTGAATTGGTCTCAAATGTGTTCAGCAAAAGAATATTTTGTCTTAATAATACTTAATCTAATATAATATTTTGAAGGTGGCAGGACATTGCTATCTGAAATCATCTCTAGTAAACATCTTTAGATTCTTCTTTTAGACCTTCCTTATAGAAGCAATTCAAAGTAGGTTGTGTTTCTGAAAATTATCACTTGGTTACTCTGCCTCTTAAGTTTTCAACCTGCAGCCCCTCCTCTTCATCCTGCCCCCCAAAATGAAAATATCTTTTCCAGTTTTCTATTATTTTTGTTCCTGAAGGTGCTGATCGCATTATACTGGCTGTTCATATAGTAGTTATAGTAATATCTCGTCAGTACTGATATCAGATAAAGCTAAGCATTTCTGGGAGAGACACTATTAAGGAAGAAGACTTTGATGAGATGACATCTGATTCCCTATGTAAGGATTATGATTTATC</genome_strand>
        <mrna_strand>TTTAATAAACGCATCGGGTCACCGAAACAAAGCACCGCTCGATCTTCCTATTACCAACTAACTTCTTTGATTCCTGCCGCCTTCTCCAATCTCCATGAAACTTTCCACTCTCCATACTCTAACCACTCCAAAGTCTCTCAGTCAAAACCCTAGACGACGTAGACATTGATGACAAATCCAAAAAGGAAGTGGAGAATACGGAGAGTTTGAGTAGTATGAATAACCCCAAACAAAGGTGGTCTTGCAATACTTGTAAGGCCGAGTTTGAGTCTCTCCATGACCAGCGTTCTCACTTCAAATCCGATATTCATCGACTAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGCTAAGCATTTCTGGGAGAGACACTATTAAGGAAGAAGACTTTGATGAGATGACATCTGATTCCCTATGTAAGGATTATGATTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573257" ref_strand="+" ref_description="SGN-U573257 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|147854692|emb|CAN82361.1| (e_value=1e-70) hypothetical; (*ATH) AT1G65520.1 (e_value=5e-68)  Symbol: None | enoyl-CoA hydratase/isomerase family protein, low similarity to enoyl-CoA hydratase (Escherichia coli) GI:2764828, carnitine racemase SP:P31551 (Escherichia coli); contains Pfam profile PF00378 enoyl-CoA hydratase/isomerase family pro... ; ">
      <seq>taagaattaagagaggagataaattaatactgtgatactgtttagccactttctcttccatccacagaatggaatcagaagggctttgcacattagaaaagagaggcaatatcttcctcctaattttaaccggcaccggtgaccaccgtttacatcccaaccttatcgactccatctctgccgctctccgccgcgtcagatccgactctacttcctcttcctccgctctgattaccacagcccaaggcaaatacttctccaatggttacgatcttaagtgggccttagtggacaacgcccgccaaaaactcatgtccagaaaactccgatgtctcgtttccgacctaataaccctacctatgccaacaatcgccgccgtcaccggtcacgcttccgctgccggcttcgttttcgcgctttgccatgactacatcttgatgcgcaaagatcgagggtttctctacatgagcgagctggatattgggtttccgataccgacttggttttcggctttagtgaagtgcagaatgggatcgccagcggtccggcgtgaggtggtgatgaaggctgctaaagtaacggctgagatgggagtcgaaatgggttttgtggattcggctcatagtggagcggaagaaactgtggaggcagcaattaagttgagtgaagaattggtgagcagaaattgggatggaaaaacgtacgctgcatgtagaaaaacactgtttgtggagctactgaattcgcttggttctgatgagactgtgggagattatggggacgaggatgcaaacaaaacactagccaagctgtaagtagtatctcatggattatattatacgaacttttaaaaaatattatcgcagagcgttcgattcttcgaaaacggctccacaacgaaggaatagaaatgctggtttccttcgatcaatttggcttggtgtctctttccgtcttagtaatatttgtgcgcttttacttgtattagtatggtatcactgaattatgagtattatttatataatataaaatgtactaaaatgtttatccttttatctaatgtcaattattatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="+" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="6735" stop="8407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7035" g_stop="8107" g_length="1073"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1075" r_length="1075" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="+" ref_id="SGN-U573257" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1073</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7035" e_stop="8107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAATTAAGAGAGGAGATAAATTAATACTGTGATACTGTTTAGCCACTTTCTCTTCCATCCACAGAATGGAATCAGAAGGGCTTTGCACATTAGAAAAGAGAGGCAATATCTTCCTCCTAATTTTAACCGGCACCGGTGACCACCGTTTACATCCCAACCTTATCGACTCCATCTCTGCCGCTCTCCGCCGCGTCAGATCCGACTCTACTTCCTCTTCCTCCGCTCTGATTACCACAGCCCAAGGCAAATACTTCTCCAATGGTTACGATCTTAAGTGGGCCTTAGTGGACAACGCCCGCCAAAAACTCATGTCCAGAAAACTCCGATGTCTCGTTTCCGACCTAATAACCCTACCTATGCCAACAATCGCCGCCGTCACCGGTCACGCTTCCGCTGCCGGCTTCGTTTTCGCGCTTTGCCATGACTACATCTTGATGCGCAAAGATCGAGGGTTTCTCTACATGAGCGAGCTGGATATTGGGTTTCCGATACCGACTTGGTTTTCGGCTTTAGTGAAGTGCAGAATGGGATCGCCAGCGGTCCGGCGTGAGGTGGTGATGAAGGCTGCTAAAGTAACGGCTGAGATGGGAGTCGAAATGGGTTTTGTGGATTCGGCTCATAGTGGAGCGGAAGAAACTGTGGAGGCAGCAATTAAGTTGAGTGAAGAATTGGTGAGCAGAAATTGGGATGGAAAAACGTACGCTGCATGTAGAAAAACACTGTTTGTGGAGCTACTGAATTCGCTTGGTTCTGATGAGACTGTGGGAGATTATGGGGACGAGGATGCAAACAAAACACTAGCCAAGCTGTAAGTAGTATCTCATGGATTATATTATACGAACTTTTAAAAAATATTATCGCAGAGCGTTCGATTCTTCGAAAACGGCTCCACAACGAAGGAATAGAAATGCTGGTTTCCTTCGATCAATTT-GCTT-GTGTCTCTTTCCGTCTTAGTAATATTTGTGCGCTTTTACTTGTATTAGTATGGTATCACTGAATTATGAGTATTATTTATATAATATAAAATGTACTAAAATGTTTATCCTTTTATCTAATGTCAATTATTATCT</genome_strand>
        <mrna_strand>TAAGAATTAAGAGAGGAGATAAATTAATACTGTGATACTGTTTAGCCACTTTCTCTTCCATCCACAGAATGGAATCAGAAGGGCTTTGCACATTAGAAAAGAGAGGCAATATCTTCCTCCTAATTTTAACCGGCACCGGTGACCACCGTTTACATCCCAACCTTATCGACTCCATCTCTGCCGCTCTCCGCCGCGTCAGATCCGACTCTACTTCCTCTTCCTCCGCTCTGATTACCACAGCCCAAGGCAAATACTTCTCCAATGGTTACGATCTTAAGTGGGCCTTAGTGGACAACGCCCGCCAAAAACTCATGTCCAGAAAACTCCGATGTCTCGTTTCCGACCTAATAACCCTACCTATGCCAACAATCGCCGCCGTCACCGGTCACGCTTCCGCTGCCGGCTTCGTTTTCGCGCTTTGCCATGACTACATCTTGATGCGCAAAGATCGAGGGTTTCTCTACATGAGCGAGCTGGATATTGGGTTTCCGATACCGACTTGGTTTTCGGCTTTAGTGAAGTGCAGAATGGGATCGCCAGCGGTCCGGCGTGAGGTGGTGATGAAGGCTGCTAAAGTAACGGCTGAGATGGGAGTCGAAATGGGTTTTGTGGATTCGGCTCATAGTGGAGCGGAAGAAACTGTGGAGGCAGCAATTAAGTTGAGTGAAGAATTGGTGAGCAGAAATTGGGATGGAAAAACGTACGCTGCATGTAGAAAAACACTGTTTGTGGAGCTACTGAATTCGCTTGGTTCTGATGAGACTGTGGGAGATTATGGGGACGAGGATGCAAACAAAACACTAGCCAAGCTGTAAGTAGTATCTCATGGATTATATTATACGAACTTTTAAAAAATATTATCGCAGAGCGTTCGATTCTTCGAAAACGGCTCCACAACGAAGGAATAGAAATGCTGGTTTCCTTCGATCAATTTGGCTTGGTGTCTCTTTCCGTCTTAGTAATATTTGTGCGCTTTTACTTGTATTAGTATGGTATCACTGAATTATGAGTATTATTTATATAATATAAAATGTACTAAAATGTTTATCCTTTTATCTAATGTCAATTATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580319" ref_strand="+" ref_description="SGN-U580319 Tomato 200607#2 [51 ESTs aligned] (*GB) gi|147781805|emb|CAN65447.1| (e_value=3e-116) hypothetical; (*ATH) AT3G60900.1 (e_value=4e-109) | Symbol: None | fasciclin-like arabinogalactan-protein (FLA10) | chr3:22510335-22512214 REVERSE | Aliases: T4C21.310; (*SWP) sp|Q9LZX4|FLA10_ARATH (e_value=4e-108) Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana GN=FLA10; ">
      <seq>gggggctaacatacaccatgactaccctacacttcttcctcttcactctccttaccgtttccgttcatgcacacaacatcactgaaattttgaacaagttcccggagtacagtgtattcaacagttatctctcacaaactaaactcgccgacgagattaacagccgtgaaactattaccgttttagctttgcctaatggagctatgtctgctatagtcgacaaacatccactttccgtcatcaaaaatgtcctctctcttcatgttttgcttgattactttgacggtactaaacttcataagatctccgacggtactacgacttccactactctttaccaaactaccggcaatgctcatggaaacataggttctgttaacattaccgatcttaaaggtggtaaagtaggttttggttcagctattccgaactcaccattggcgtctacatatactaaatctgtgaagcaaatccagtataatatctctgtgttggaagttagtgctccgattattgctccgggtattttgacggcaccggcgccatctggtgattttaatattactggtgcattggagaaagctgggtgtaaaacatttgcttcattacttgtcaaatctggagttctcaagacgtatcaaactgctattgagaagggtttgactatttttgccccaaatgatgaggcgtttaagggagctaaagttccagatctgagcgatctcagtagcgctgatgttgtttcgttgttgcagtaccatgctattccgagttacactcctattggaaccttgaaaacgacgaaggatccgatttcaactctagctactaatggcgctagcaagtatgatctggcagtttcaacagaaggtgaccaggtgacacttgacacaggtgtcgattcgtccagaatcgcttccacagtcattgactctactcccttctgcattttcaccgtcgacagtgtgcttctacctgtggaattgtacggaaaagctccatccccagcaccaggaccagctccggagacttctccaacaccagcaccagcccctgctccggaagccagctctcctactccaatgatgtctcctcctgctccaccgacttcatctccagctggttctccggcggatagtcccactgcagattcggagaacagtacggcgaagaagaacgccggtaacgttaacactccggcgctactgaaagctctactcacagtgtcagtttcggtaattgtgtccgtttatttgtcctaaaccgccattttccgtttgtttaattaaatttgggtttttggagtcatatttttatttgtgacttgcttgtagagacgatttttatttaatttcatttaatttttaaatgtcctttaatagtgagtgagccgtttatctgagtaaagggcactgttttttcttttcttttcttttgttctgttgctgtactttgtttttattttaaatcctttgtcttatttttggtgtataataatgttccacttgttgagttattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="-" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="13684" stop="11568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13388" g_stop="11868" g_length="1521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1521" r_length="1521" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="-" ref_id="SGN-U580319" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U580319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13388" e_stop="11868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCTAACATACACCATGACTACCCTACACTTCTTCCTCTTCACTCTCCTTACCGTTTCCGTTCATGCACACAACATCACTGAAATTTTGAACAAGTTCCCGGAGTACAGTGTATTCAACAGTTATCTCTCACAAACTAAACTCGCCGACGAGATTAACAGCCGTGAAACTATTACCGTTTTAGCTTTGCCTAATGGAGCTATGTCTGCTATAGTCGACAAACATCCACTTTCCGTCATCAAAAATGTCCTCTCTCTTCATGTTTTGCTTGATTACTTTGACGGTACTAAACTTCATAAGATCTCCGACGGTACTACGACTTCCACTACTCTTTACCAAACTACCGGCAATGCTCATGGAAACATAGGTTCTGTTAACATTACCGATCTTAAAGGTGGTAAAGTAGGTTTTGGTTCAGCTATTCCGAACTCACCATTGGCGTCTACATATACTAAATCTGTGAAGCAAATCCAGTATAATATCTCTGTGTTGGAAGTTAGTGCTCCGATTATTGCTCCGGGTATTTTGACGGCACCGGCGCCATCTGGTGATTTTAATATTACTGGTGCATTGGAGAAAGCTGGGTGTAAAACATTTGCTTCATTACTTGTCAAATCTGGAGTTCTCAAGACGTATCAAACTGCTATTGAGAAGGGTTTGACTATTTTTGCCCCAAATGATGAGGCGTTTAAGGGAGCTAAAGTTCCAGATCTGAGCGATCTCAGTAGCGCTGATGTTGTTTCGTTGTTGCAGTACCATGCTATTCCGAGTTACACTCCTATTGGAACCTTGAAAACGACGAAGGATCCGATTTCAACTCTAGCTACTAATGGCGCTAGCAAGTATGATCTGGCAGTTTCAACAGAAGGTGACCAGGTGACACTTGACACAGGTGTCGATTCGTCCAGAATCGCTTCCACAGTCATTGACTCTACTCCCTTCTGCATTTTCACCGTCGACAGTGTGCTTCTACCTGTGGAATTGTACGGAAAAGCTCCATCCCCAGCACCAGGACCAGCTCCGGAGACTTCTCCAACACCAGCACCAGCCCCTGCTCCGGAAGCCAGCTCTCCTACTCCAATGATGTCTCCTCCTGCTCCACCGACTTCATCTCCAGCTGGTTCTCCGGCGGATAGTCCCACTGCAGATTCGGAGAACAGTACGGCGAAGAAGAACGCCGGTAACGTTAACACTCCGGCGCTACTGAAAGCTCTACTCACAGTGTCAGTTTCGGTAATTGTGTCCGTTTATTTGTCCTAAACCGCCATTTTCCGTTTGTTTAATTAAATTTGGGTTTTTGGAGTCATATTTTTATTTGTGACTTGCTTGTAGAGACGATTTTTATTTAATTTCATTTAATTTTTAAATGTCCTTTAATAGTGAGTGAGCCGTTTATCTGAGTAAAGGGCACTGTTTTTTCTTTTCTTTTCTTTTGTTCTGTTGCTGTACTTTGTTTTTATTTTAAATCCTTTGTCTTATTTTTGGTGTATAATAATGTTCCACTTGTTGAGTTATTATC</genome_strand>
        <mrna_strand>GGGGGCTAACATACACCATGACTACCCTACACTTCTTCCTCTTCACTCTCCTTACCGTTTCCGTTCATGCACACAACATCACTGAAATTTTGAACAAGTTCCCGGAGTACAGTGTATTCAACAGTTATCTCTCACAAACTAAACTCGCCGACGAGATTAACAGCCGTGAAACTATTACCGTTTTAGCTTTGCCTAATGGAGCTATGTCTGCTATAGTCGACAAACATCCACTTTCCGTCATCAAAAATGTCCTCTCTCTTCATGTTTTGCTTGATTACTTTGACGGTACTAAACTTCATAAGATCTCCGACGGTACTACGACTTCCACTACTCTTTACCAAACTACCGGCAATGCTCATGGAAACATAGGTTCTGTTAACATTACCGATCTTAAAGGTGGTAAAGTAGGTTTTGGTTCAGCTATTCCGAACTCACCATTGGCGTCTACATATACTAAATCTGTGAAGCAAATCCAGTATAATATCTCTGTGTTGGAAGTTAGTGCTCCGATTATTGCTCCGGGTATTTTGACGGCACCGGCGCCATCTGGTGATTTTAATATTACTGGTGCATTGGAGAAAGCTGGGTGTAAAACATTTGCTTCATTACTTGTCAAATCTGGAGTTCTCAAGACGTATCAAACTGCTATTGAGAAGGGTTTGACTATTTTTGCCCCAAATGATGAGGCGTTTAAGGGAGCTAAAGTTCCAGATCTGAGCGATCTCAGTAGCGCTGATGTTGTTTCGTTGTTGCAGTACCATGCTATTCCGAGTTACACTCCTATTGGAACCTTGAAAACGACGAAGGATCCGATTTCAACTCTAGCTACTAATGGCGCTAGCAAGTATGATCTGGCAGTTTCAACAGAAGGTGACCAGGTGACACTTGACACAGGTGTCGATTCGTCCAGAATCGCTTCCACAGTCATTGACTCTACTCCCTTCTGCATTTTCACCGTCGACAGTGTGCTTCTACCTGTGGAATTGTACGGAAAAGCTCCATCCCCAGCACCAGGACCAGCTCCGGAGACTTCTCCAACACCAGCACCAGCCCCTGCTCCGGAAGCCAGCTCTCCTACTCCAATGATGTCTCCTCCTGCTCCACCGACTTCATCTCCAGCTGGTTCTCCGGCGGATAGTCCCACTGCAGATTCGGAGAACAGTACGGCGAAGAAGAACGCCGGTAACGTTAACACTCCGGCGCTACTGAAAGCTCTACTCACAGTGTCAGTTTCGGTAATTGTGTCCGTTTATTTGTCCTAAACCGCCATTTTCCGTTTGTTTAATTAAATTTGGGTTTTTGGAGTCATATTTTTATTTGTGACTTGCTTGTAGAGACGATTTTTATTTAATTTCATTTAATTTTTAAATGTCCTTTAATAGTGAGTGAGCCGTTTATCTGAGTAAAGGGCACTGTTTTTTCTTTTCTTTTCTTTTGTTCTGTTGCTGTACTTTGTTTTTATTTTAAATCCTTTGTCTTATTTTTGGTGTATAATAATGTTCCACTTGTTGAGTTATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593256" ref_strand="+" ref_description="SGN-U593256 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157273660|gb|ABV27484.1| (e_value=3e-79) fasciclin-like; (*ATH) AT2G45470.1 (e_value=2e-76) | Symbol: None | fasciclin-like arabinogalactan-protein (FLA8) | chr2:18749614-18751185 REVERSE | Aliases: F4L23.2; (*SWP) sp|O22126|FLA8_ARATH (e_value=2e-75) Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana GN=FLA8; ">
      <seq>acgaggacttcttcctcttcactctccttaccgtttccgttcatgcacacaacatcactgaaattttgaacaagttcccggagtacagtgtattcaacagttatctctcacaaactaaactcgccgacgagattaacagccgtgaaactattaccgttttagctttgcctaatggagctatgtctgctatagtcgacaaacatccactttccgtcatcaaaaatgtcctctctcttcatgttttgcttgattactttgacggtactaaacttcataagatctccgacggtactacgacttccactactctttaccaaactaccggcaatgctcatggaaacataggttctgttaacattaccgatcttaaaggtggtaaagtaggttttggttcagctattccgaactcaccattggcgtctacatatactaaatctgtgaagcaaatccagtataatatctctgtgttggaagttagtgctccgattattgctccgggtattttgacggcaccggcgccatctggtgattttaatattactggtgcattggagaaagctgggtgtaaaacatttgcttcattacttgtcaaatctggagttctcaagacgtatcaaactgctattgagaagggtttgactatttttgcccctgctccggaagccagctctcctactccaatgatgtctcctcctgctccaccgacttcatctccagctggttctccggcggatagtcccactgcagattcggagaacagtacggcgaagaagaacgccggtaacgttaacactccggcgctactgaaagctctactcacagtgtcagtttcggtaattgtgtccgtttatttgtcctaaaccgcccattttccgtttgttttaatttaatttggggtttttggagtcatatttttatttgtgacttgcttgtagagaccatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="-" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="13658" stop="11745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13364" g_stop="12717" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12716" i_stop="12339" i_length="378">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12338" g_stop="12045" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="945" r_length="297" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="-" ref_id="SGN-U593256" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>942</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U593256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13364" e_stop="12717"/>
          <exon e_start="12338" e_stop="12045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTACACTTCTTCCTCTTCACTCTCCTTACCGTTTCCGTTCATGCACACAACATCACTGAAATTTTGAACAAGTTCCCGGAGTACAGTGTATTCAACAGTTATCTCTCACAAACTAAACTCGCCGACGAGATTAACAGCCGTGAAACTATTACCGTTTTAGCTTTGCCTAATGGAGCTATGTCTGCTATAGTCGACAAACATCCACTTTCCGTCATCAAAAATGTCCTCTCTCTTCATGTTTTGCTTGATTACTTTGACGGTACTAAACTTCATAAGATCTCCGACGGTACTACGACTTCCACTACTCTTTACCAAACTACCGGCAATGCTCATGGAAACATAGGTTCTGTTAACATTACCGATCTTAAAGGTGGTAAAGTAGGTTTTGGTTCAGCTATTCCGAACTCACCATTGGCGTCTACATATACTAAATCTGTGAAGCAAATCCAGTATAATATCTCTGTGTTGGAAGTTAGTGCTCCGATTATTGCTCCGGGTATTTTGACGGCACCGGCGCCATCTGGTGATTTTAATATTACTGGTGCATTGGAGAAAGCTGGGTGTAAAACATTTGCTTCATTACTTGTCAAATCTGGAGTTCTCAAGACGTATCAAACTGCTATTGAGAAGGGTTTGACTATTTTTGCCCCAAATGATGAGGCGTTTAAGGGAGCTAAAGTTCCAGATCTGAGCGATCTCAGTAGCGCTGATGTTGTTTCGTTGTTGCAGTACCATGCTATTCCGAGTTACACTCCTATTGGAACCTTGAAAACGACGAAGGATCCGATTTCAACTCTAGCTACTAATGGCGCTAGCAAGTATGATCTGGCAGTTTCAACAGAAGGTGACCAGGTGACACTTGACACAGGTGTCGATTCGTCCAGAATCGCTTCCACAGTCATTGACTCTACTCCCTTCTGCATTTTCACCGTCGACAGTGTGCTTCTACCTGTGGAATTGTACGGAAAAGCTCCATCCCCAGCACCAGGACCAGCTCCGGAGACTTCTCCAACACCAGCACCAGCCCCTGCTCCGGAAGCCAGCTCTCCTACTCCAATGATGTCTCCTCCTGCTCCACCGACTTCATCTCCAGCTGGTTCTCCGGCGGATAGTCCCACTGCAGATTCGGAGAACAGTACGGCGAAGAAGAACGCCGGTAACGTTAACACTCCGGCGCTACTGAAAGCTCTACTCACAGTGTCAGTTTCGGTAATTGTGTCCGTTTATTTGTCCTAAACCGC-CATTTTCCGTTTG-TTTAATTAAATTT-GGGTTTTTGGAGTCATATTTTTATTTGTGACTTGCTTGTAGAGACGATTTT</genome_strand>
        <mrna_strand>ACGAGGACTTCTTCCTCTTCACTCTCCTTACCGTTTCCGTTCATGCACACAACATCACTGAAATTTTGAACAAGTTCCCGGAGTACAGTGTATTCAACAGTTATCTCTCACAAACTAAACTCGCCGACGAGATTAACAGCCGTGAAACTATTACCGTTTTAGCTTTGCCTAATGGAGCTATGTCTGCTATAGTCGACAAACATCCACTTTCCGTCATCAAAAATGTCCTCTCTCTTCATGTTTTGCTTGATTACTTTGACGGTACTAAACTTCATAAGATCTCCGACGGTACTACGACTTCCACTACTCTTTACCAAACTACCGGCAATGCTCATGGAAACATAGGTTCTGTTAACATTACCGATCTTAAAGGTGGTAAAGTAGGTTTTGGTTCAGCTATTCCGAACTCACCATTGGCGTCTACATATACTAAATCTGTGAAGCAAATCCAGTATAATATCTCTGTGTTGGAAGTTAGTGCTCCGATTATTGCTCCGGGTATTTTGACGGCACCGGCGCCATCTGGTGATTTTAATATTACTGGTGCATTGGAGAAAGCTGGGTGTAAAACATTTGCTTCATTACTTGTCAAATCTGGAGTTCTCAAGACGTATCAAACTGCTATTGAGAAGGGTTTGACTATTTTTG..........................................................................................................................................................................................................................................................................................................................................................................................CCCCTGCTCCGGAAGCCAGCTCTCCTACTCCAATGATGTCTCCTCCTGCTCCACCGACTTCATCTCCAGCTGGTTCTCCGGCGGATAGTCCCACTGCAGATTCGGAGAACAGTACGGCGAAGAAGAACGCCGGTAACGTTAACACTCCGGCGCTACTGAAAGCTCTACTCACAGTGTCAGTTTCGGTAATTGTGTCCGTTTATTTGTCCTAAACCGCCCATTTTCCGTTTGTTTTAATTTAATTTGGGGTTTTTGGAGTCATATTTTTATTTGTGACTTGCTTGTAGAGACCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596303" ref_strand="+" ref_description="SGN-U596303 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157349223|emb|CAO24369.1| (e_value=7e-13) unnamed; ">
      <seq>aaattgctcagccccaactcgtatggagaacaaaaacagtgtcatctccgaaaaattgtctgcagaatctatttctaagttcaatagattcctcaaaggcatgggggtcttcaaccttaactttcctcctcagtatgacactaaggattctttctctgaactcagccgcagcctcctcaaggttcaacatatccaccgtggcaagatttcatgtattgtctctgtcaaacctcctatcatgaatatctatggttcattgcacggaggagcaggtggagatgtagcagtaagggtagcaactgcctgtgctcgaactatcgtgggaaaggataaagagctctttctaggagaattaagcatatcttatctctctagtgctcctgaaaatgtgagtctttaaggcatttgttttgttctcagcattctccgtgttaatgcgttgcttgcagtttaagcatcaaggaagagcatgtcaagatttgggtggtcttttttcttttcacctgctacagtgctgagcgtgtgtgaattttcttacagttttataaatactgcatagatgtttatttgtttaacagcagacgcgacaaacgcatatggaattataagatgagaaagtcatagaactaacctagacttgcaaagtnngaacacagccgtcatgttgaattgtcttgttttgaccatgctactctctccattnnatattacttggncccngnt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="+" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="29194" stop="31266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29494" g_stop="29734" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29735" i_stop="30484" i_length="750">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30485" g_stop="30966" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="723" r_length="482" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="+" ref_id="SGN-U596303" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29494" e_stop="29734"/>
          <exon e_start="30485" e_stop="30966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGCTCAGCCCCAACTCGTATGGAGAACAAAAACAGTGTCATCTCCGAAAAATTGTCTGCAGAATCTATTTCTAAGTTCAATAGATTCCTCAAAGGCATGGGGGTCTTCAACCTTAACTTTCCTCCTCAGTATGACACTAAGGATTCTTTCTCTGAACTCAGCCGCAGCCTCCTCAAGGTTCAACATATCCACCGTGGCAAGATTTCATGTATTGTCTCTGTCAAACCTCCTATCATGGTAAACGATTCTTGTTTTGAATACGTTATTTGGTTGAAAAGATCCAGTCTTTCTTGAATTTTGTTTGATACCCATTTTGGAAAATCCCTAATTTTGTCTGAAAATGAAAAGTTAATTCTTTAGAATTGAAAATGTAATTGACCCAAAATGGAACAGATTGATTATTGAGGATTCGTACCTTCCCACTGATCCGGGCTCGTTCTCTTTCGTTTTTTTGTGGATGGTTGGAAGTGGTTAGGGGACAAATATCATTTTGAGGGATATATAAGTGAGATTGAAGGAGGTGGTTCAAGTTGAGATTCTCAAGACTTGAACTTTTAGATGTCAGATGGCATATGCATTTAGGCGTTGGTATTGCTATGGATTTGAGGTATCCCCAATTGTGAAACTTCCACTTAATCTATTCCATCCAATGGACTTTTACACATTTACCTTGGAATTGAAACAACTGATTTTATTCCACTCAATGTGCTGAGACAGAATCCTACGAGTCTCCTTTACTTAGCCCCTGATTTTGACCATGCTACTCTCTCCATTTCATATTACTTGACATCTCTATCTGACCTCCTTCACCATCCATGTGCGTGCTTTCTGCCTCATGCAATGGTGCAATCTTTTTGCGGATACTATCAACTTCCAAGTTGCATTTTATTCAATTGCGTTGAGTGTATACTATTTTCTTTTCGTTCTTTTAGCTGTTACCGGCGAAATAAAGTATTGGAATACATTGGTTTACTTATTTCCTTGCAGAATATCTATGGTTCATTGCACGGAGGAGCAGGTGGAGATGTAGCAGTAAGGGTAGCAACTGCCTGTGCTCGAACTATCGTGGGAAAGGATAAAGAGCTCTTTCTAGGAGAATTAAGCATATCTTATCTCTCTAGTGCTCCTGAAAATGTGAGTCTTTAAGGCATTTGTTTTGTTCTCAGCATTCTCCGTGTTAATGCGTTGCTTGCAGTTTAAGCATCAAGGAAGAGCATGTCAAGATTTGGGTGGTCTTTTTTCTTTTCACCTGCTACAGTGCTGAGCGTGTGTGAATTTTCTTACAGTTTTATAAATACTGCATAGATGTTTATTTGTTTAACAGCAGACGCGACAAACGCATATGGAATTATAAGATGAGAAAGTCATAGAACTAACCTAGACTTGCAAAGTAGGAACACAGCCGTCATGTTGAATTGTCTTGTTTTGACCATGCTACTCTCTCCATTTCATATTACTTGGCCCCTGTT</genome_strand>
        <mrna_strand>AAATTGCTCAGCCCCAACTCGTATGGAGAACAAAAACAGTGTCATCTCCGAAAAATTGTCTGCAGAATCTATTTCTAAGTTCAATAGATTCCTCAAAGGCATGGGGGTCTTCAACCTTAACTTTCCTCCTCAGTATGACACTAAGGATTCTTTCTCTGAACTCAGCCGCAGCCTCCTCAAGGTTCAACATATCCACCGTGGCAAGATTTCATGTATTGTCTCTGTCAAACCTCCTATCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCTATGGTTCATTGCACGGAGGAGCAGGTGGAGATGTAGCAGTAAGGGTAGCAACTGCCTGTGCTCGAACTATCGTGGGAAAGGATAAAGAGCTCTTTCTAGGAGAATTAAGCATATCTTATCTCTCTAGTGCTCCTGAAAATGTGAGTCTTTAAGGCATTTGTTTTGTTCTCAGCATTCTCCGTGTTAATGCGTTGCTTGCAGTTTAAGCATCAAGGAAGAGCATGTCAAGATTTGGGTGGTCTTTTTTCTTTTCACCTGCTACAGTGCTGAGCGTGTGTGAATTTTCTTACAGTTTTATAAATACTGCATAGATGTTTATTTGTTTAACAGCAGACGCGACAAACGCATATGGAATTATAAGATGAGAAAGTCATAGAACTAACCTAGACTTGCAAAGTNNGAACACAGCCGTCATGTTGAATTGTCTTGTTTTGACCATGCTACTCTCTCCATTNNATATTACTTGGNCCCNGNT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581889" ref_strand="+" ref_description="SGN-U581889 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157349223|emb|CAO24369.1| (e_value=7e-35) unnamed; (*ATH) AT3G61200.1 (e_value=6e-31) | Symbol: None | thioesterase family protein, contains Pfam profile PF03061: thioesterase family protein | chr3:22668430-22669365 REVERSE | Aliases: T20K12.100; ">
      <seq>gatagcaaattgcttaggtatatagagttgaacctttggtagatgggggaagagagttcgaaatcgaagagttcattcaccaaagacacaatcatctccgaagatttatctgaggaagccgctttcttggcggatcgtctcctcagccgcgtgcaactccacggggacaagtttccggccggatatgaatctttctctgaactcactcgcggctgtctcaaggtccacagcatccatcctggcaaagtctcctgcattttatctgtcaaatctgcaatctcgaatatttatggtagcatgcatggaggagcagttggagctgtcgcagagacggtgtcaattgcctgtgctagaactgttgtaggaaaggataagaagctctttcttggagaattgagaatgtcgtatctttctactgctaaaagcaatgcagaggtgatcgtagatgggtctattattaagagtggaaggagcacaactgtagttgcaactgattttcagctcaaggactcgaagaaattggtctactcctcgagtgcaacattctatcacatgcccatcgcaagtttatgaactcaactcaacacatttgctaaacctgttcagcagatccagctcatgtacaattgcagatcattgatataatctcgagtgtcgtatctgccatcaccatatcaatatctcgtattatctgaaattcccttatttgtcttctgtttcgtctttgtaactgaagtgttgcttgatgaagtacacaattgaaccatgatatattgaaagagaaaatcatgcaaatcaatcttgtattagctgtgtgtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="+" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="34730" stop="36401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35030" g_stop="35311" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35312" i_stop="35417" i_length="106">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.506" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35418" g_stop="35564" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="429" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35565" i_stop="35710" i_length="146">
            <donor d_prob="0.717" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35711" g_stop="36101" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="820" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="+" ref_id="SGN-U581889" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35030" e_stop="35311"/>
          <exon e_start="35418" e_stop="35564"/>
          <exon e_start="35711" e_stop="36101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGCAAATTGCTTAGGTATATAGAGTTGAACCTTTGGTAGATGGGGGAAGAGAGTTCGAAATCGAAGAGTTCATTCACCAAAGACACAATCATCTCCGAAGATTTATCTGAGGAAGCCGCTTTCTTGGCGGATCGTCTCCTCAGCCGCGTGCAACTCCACGGGGACAAGTTTCCGGCCGGATATGAATCTTTCTCTGAACTCACTCGCGGCTGTCTCAAGGTCCACAGCATCCATCCTGGCAAAGTCTCCTGCATTTTATCTGTCAAATCTGCAATCTCGGTAAAATATTTGGGATCTGATTTTCACTTCTGTTCAATCTCTGTTTCTTTTCTTCTAGTTGGATGGGCTTGCCCTCACTCTAATATGACAAAGTGTGCAACCTCAGAATATTTATGGTAGCATGCATGGAGGAGCAGTTGGAGCTGTCGCAGAGACGGTGTCAATTGCCTGTGCTAGAACTGTTGTAGGAAAGGATAAGAAGCTCTTTCTTGGAGAATTGAGAATGTCGTATCTTTCTACTGCTAAAAGCAATGTGAGTATTAAAGTTTTCATATAAGCTCCCTTTACCTCAATAGAACTACAACTTATTGTATAGTAACAATTTGGTAAAGACCAAATGCACATCATAAAAGGGTCTCTTTCCTATTTATTTGCTTTTGTATTTGTGTCCCACTCTAGGCAGAGGTGATCGTAGATGGGTCTATTATTAAGAGTGGAAGGAGCACAACTGTAGTTGCAACTGATTTTCAGCTCAAGGACTCGAAGAAATTGGTCTACTCCTCGAGTGCAACATTCTATCACATGCCCATCGCAAGTTTATGAACTCAACTCAACACATTTGCTAAACCTGTTCAGCAGATCCAGCTCATGTACAATTGCAGATCATTGATATAATCTCGAGTGTCGTATCTGCCATCACCATATCAATATCTCGTATTATCTGAAATTCCCTTATTTGTCTTCTGTTTCGTCTTTGTAACTGAAGTGTTGCTTGATGAAGTACACAATTGAACCATGATATATTGAAAGAGAAAATCATGCAAATCAATCTTGTATTAGCTGTGTGTCC</genome_strand>
        <mrna_strand>GATAGCAAATTGCTTAGGTATATAGAGTTGAACCTTTGGTAGATGGGGGAAGAGAGTTCGAAATCGAAGAGTTCATTCACCAAAGACACAATCATCTCCGAAGATTTATCTGAGGAAGCCGCTTTCTTGGCGGATCGTCTCCTCAGCCGCGTGCAACTCCACGGGGACAAGTTTCCGGCCGGATATGAATCTTTCTCTGAACTCACTCGCGGCTGTCTCAAGGTCCACAGCATCCATCCTGGCAAAGTCTCCTGCATTTTATCTGTCAAATCTGCAATCTCG..........................................................................................................AATATTTATGGTAGCATGCATGGAGGAGCAGTTGGAGCTGTCGCAGAGACGGTGTCAATTGCCTGTGCTAGAACTGTTGTAGGAAAGGATAAGAAGCTCTTTCTTGGAGAATTGAGAATGTCGTATCTTTCTACTGCTAAAAGCAAT..................................................................................................................................................GCAGAGGTGATCGTAGATGGGTCTATTATTAAGAGTGGAAGGAGCACAACTGTAGTTGCAACTGATTTTCAGCTCAAGGACTCGAAGAAATTGGTCTACTCCTCGAGTGCAACATTCTATCACATGCCCATCGCAAGTTTATGAACTCAACTCAACACATTTGCTAAACCTGTTCAGCAGATCCAGCTCATGTACAATTGCAGATCATTGATATAATCTCGAGTGTCGTATCTGCCATCACCATATCAATATCTCGTATTATCTGAAATTCCCTTATTTGTCTTCTGTTTCGTCTTTGTAACTGAAGTGTTGCTTGATGAAGTACACAATTGAACCATGATATATTGAAAGAGAAAATCATGCAAATCAATCTTGTATTAGCTGTGTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581888" ref_strand="+" ref_description="SGN-U581888 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157349223|emb|CAO24369.1| (e_value=7e-20) unnamed; (*ATH) AT3G61200.1 (e_value=3e-16) | Symbol: None | thioesterase family protein, contains Pfam profile PF03061: thioesterase family protein | chr3:22668430-22669365 REVERSE | Aliases: T20K12.100; ">
      <seq>acttaggtatatagagttgaacctttggtagatgggggaagagagttcgaaatcgaagagttcattcaccaaagacacaatcatctccgaagatttatctgaggaagccgctttcttggcggatcgtctcctcagccgcgtgcaactccacggggacaagtttccggccggatatgaatctttctctgaactcactcgcggctgtctcaaggtccacagcatccatcctggcaaagtctcctgcattttatctgtcaaatctgcaatctcgaatatttatggtagcatgcatggaggagcagttggagctgtcgcagagacggtgtcaattgcctgtgctagaactgttgtaggaaaggataagaagctctttcttggagaattgagaatgtcgtatctttctactgctaaaagcaatgtgagtattaaagttttcatataagctccctttacctcaatagaactacaacttattgtatagtaacaatttggtaaagaccaaatgcacatcataaaagggtctctttcctatttatttgcttttgtatttgtgtcccactctaggcagaggtgatcgtagatgggtctattattaagagtggaaggagcacaactgtagttgcaactgattttcagctcaaggactcgaagaaattggtctactcctcgagtgcaacattctatcacatgcccatcgcaagtttatgaactcaactcaacacatttgctaaacctggtcagcagatccagctcatgtaccattgcagatcattgatataatctcgagtggcgtatctgccatcaccatatcaatatctcgtattatctgaaattcccctatttggcctctggttcggccttgtaactgaagtggtgcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="+" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="34742" stop="36329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35041" g_stop="35311" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35312" i_stop="35417" i_length="106">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.506" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35418" g_stop="36029" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="883" r_length="612" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="+" ref_id="SGN-U581888" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35041" e_stop="35311"/>
          <exon e_start="35418" e_stop="36029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTAGGTATATAGAGTTGAACCTTTGGTAGATGGGGGAAGAGAGTTCGAAATCGAAGAGTTCATTCACCAAAGACACAATCATCTCCGAAGATTTATCTGAGGAAGCCGCTTTCTTGGCGGATCGTCTCCTCAGCCGCGTGCAACTCCACGGGGACAAGTTTCCGGCCGGATATGAATCTTTCTCTGAACTCACTCGCGGCTGTCTCAAGGTCCACAGCATCCATCCTGGCAAAGTCTCCTGCATTTTATCTGTCAAATCTGCAATCTCGGTAAAATATTTGGGATCTGATTTTCACTTCTGTTCAATCTCTGTTTCTTTTCTTCTAGTTGGATGGGCTTGCCCTCACTCTAATATGACAAAGTGTGCAACCTCAGAATATTTATGGTAGCATGCATGGAGGAGCAGTTGGAGCTGTCGCAGAGACGGTGTCAATTGCCTGTGCTAGAACTGTTGTAGGAAAGGATAAGAAGCTCTTTCTTGGAGAATTGAGAATGTCGTATCTTTCTACTGCTAAAAGCAATGTGAGTATTAAAGTTTTCATATAAGCTCCCTTTACCTCAATAGAACTACAACTTATTGTATAGTAACAATTTGGTAAAGACCAAATGCACATCATAAAAGGGTCTCTTTCCTATTTATTTGCTTTTGTATTTGTGTCCCACTCTAGGCAGAGGTGATCGTAGATGGGTCTATTATTAAGAGTGGAAGGAGCACAACTGTAGTTGCAACTGATTTTCAGCTCAAGGACTCGAAGAAATTGGTCTACTCCTCGAGTGCAACATTCTATCACATGCCCATCGCAAGTTTATGAACTCAACTCAACACATTTGCTAAACCTGTTCAGCAGATCCAGCTCATGTACAATTGCAGATCATTGATATAATCTCGAGTGTCGTATCTGCCATCACCATATCAATATCTCGTATTATCTGAAATTCCCTTATTTGTCTTCTGTTTCGTCTTTGTAACTGAAGTGTTGCTTGATG</genome_strand>
        <mrna_strand>ACTTAGGTATATAGAGTTGAACCTTTGGTAGATGGGGGAAGAGAGTTCGAAATCGAAGAGTTCATTCACCAAAGACACAATCATCTCCGAAGATTTATCTGAGGAAGCCGCTTTCTTGGCGGATCGTCTCCTCAGCCGCGTGCAACTCCACGGGGACAAGTTTCCGGCCGGATATGAATCTTTCTCTGAACTCACTCGCGGCTGTCTCAAGGTCCACAGCATCCATCCTGGCAAAGTCTCCTGCATTTTATCTGTCAAATCTGCAATCTCG..........................................................................................................AATATTTATGGTAGCATGCATGGAGGAGCAGTTGGAGCTGTCGCAGAGACGGTGTCAATTGCCTGTGCTAGAACTGTTGTAGGAAAGGATAAGAAGCTCTTTCTTGGAGAATTGAGAATGTCGTATCTTTCTACTGCTAAAAGCAATGTGAGTATTAAAGTTTTCATATAAGCTCCCTTTACCTCAATAGAACTACAACTTATTGTATAGTAACAATTTGGTAAAGACCAAATGCACATCATAAAAGGGTCTCTTTCCTATTTATTTGCTTTTGTATTTGTGTCCCACTCTAGGCAGAGGTGATCGTAGATGGGTCTATTATTAAGAGTGGAAGGAGCACAACTGTAGTTGCAACTGATTTTCAGCTCAAGGACTCGAAGAAATTGGTCTACTCCTCGAGTGCAACATTCTATCACATGCCCATCGCAAGTTTATGAACTCAACTCAACACATTTGCTAAACCTGGTCAGCAGATCCAGCTCATGTACCATTGCAGATCATTGATATAATCTCGAGTGGCGTATCTGCCATCACCATATCAATATCTCGTATTATCTGAAATTCCCCTATTTGGCCTCTGGTTCGGCCTTGTAACTGAAGTGGTGCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564414" ref_strand="+" ref_description="SGN-U564414 Tomato 200607#2 [29 ESTs aligned] (*GB) gi|157349224|emb|CAO24370.1| (e_value=6e-155) unnamed; (*ATH) AT2G45770.1 (e_value=9e-152)  Symbol: None | signal recognition particle receptor protein, chloroplast (FTSY), similar to Cell division protein ftsY homolog (SP:O67066) {Aquifex aeolicus}; contains Pfam PF00448: SRP54-type protein, GTPase domain contains TIGRFAM TIGR00064: signa... ; (*SWP) sp|O67066|FTSY_AQUAE (e_value=1e-70) Cell division protein ftsY homolog OS=Aquifex aeolicus GN=ftsY; ">
      <seq>gaaaactaaaagagagaaaaaaacgaatgttaaagagcaataaaacggcgtcgtgtgaagctgcattatcttctccattgctgcttctgagctgaacgaaatggcttcaacgttatcttctcgtctcccacgtcttccttccaaaacggtattcccacattctaactccggttcaactctcctccacttcacatccaaaacccggttcgatcagtcccggtttagatgctcggcgggtcaaacggggttcttcacgaagcttggtcgtttgctgaaagagaaagccaagagtgatgtggagaaactgttctcaggattctcaaaaactcgagacaatttagctgttattgatgaactcctcctttactggaacctttctgatactgatcgtgttcttgatgaacttgaagaggttctgttggtcgctgattttgggccgaagattaccataaagattgtggagagcttgcgggaggatatatatgcagggaaaatcaaatcaggaagtgagataaaaagtgttctaaagaagagtatcttggatctattgactagtaaagcacctaaaacagaactcagtctgggcttcaggaaaccagctgtaatcatgattgtgggtgtcaatggaggtgggaagacaacatctcttggaaagttggcaaataggttgaagagagaaggggcaaagatactattagcagctggtgatacatttagagcagctgctagtgatcagttagaaatctgggctgaaaggactggttgtgagattgttgttgctgaaaaagagaaagctaaggcatcgtcagttatttcacaggctgttaaaagaggaaaggaagagggtttcgatattgttttatgcgacacatctggccgtttgcacaccaactatagcttgatggaggaattggtggcatgcaaaaaagttgtcagtaaaattgttaatggtgcacctaatgaaatcttgctagtactggatggaacgactggtttaaatatgcttcctcaagcaagagagtttaatgaggttgttggaatcactgggttaatattgactaaacttgatggttctgctcgaggtggctgtgtggtcagtgtggttgatgagcttggtattcctgtaaaatttgtaggtgttggggaaggtgtagatgacctccaaccattcaatgctgaggaatttgttgatgctatcttcccatgaggcatgattcagtgacagtttctcctatattctaagtgaactctctggtgttaacaagacacaaacattttggcgagagaggagtaatgagacattagaaatttttgtctttaacagaacgtgtgccttatgctcctttgtttatctagatctgctctatttcattgaggatgtgtcatcagaagagacacttagttgtccagtacgactgatgccattagttgcatcgcctttttttaaaatcaaaagatcagtgtcatctccttgtcattgttgcagtattaagtagtaatacagcattgtagttaaagtggagtttcattggacacacagctaatacaagattgatttgcatgaatataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="-" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="42235" stop="35764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41935" g_stop="41524" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41523" i_stop="40774" i_length="750">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40773" g_stop="40669" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="517" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40668" i_stop="40440" i_length="229">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.770" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40439" g_stop="40366" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="591" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40365" i_stop="40271" i_length="95">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40270" g_stop="40212" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="650" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40211" i_stop="39915" i_length="297">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39914" g_stop="39877" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="688" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39876" i_stop="38778" i_length="1099">
            <donor d_prob="0.358" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38777" g_stop="38657" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="809" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38656" i_stop="38570" i_length="87">
            <donor d_prob="0.193" d_score="1.00"/>
            <acceptor a_prob="0.269" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38569" g_stop="38501" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="810" r_stop="878" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="38500" i_stop="38418" i_length="83">
            <donor d_prob="0.482" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="38417" g_stop="38335" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="879" r_stop="961" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="38334" i_stop="37643" i_length="692">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="37642" g_stop="37574" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="962" r_stop="1030" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="37573" i_stop="37485" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="37484" g_stop="37422" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1031" r_stop="1093" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="37421" i_stop="37297" i_length="125">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="37296" g_stop="37148" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1094" r_stop="1242" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="37147" i_stop="36390" i_length="758">
            <donor d_prob="0.215" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="36389" g_stop="36062" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1243" r_stop="1570" r_length="328" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="-" ref_id="SGN-U564414" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41935" e_stop="41524"/>
          <exon e_start="40773" e_stop="40669"/>
          <exon e_start="40439" e_stop="40366"/>
          <exon e_start="40270" e_stop="40212"/>
          <exon e_start="39914" e_stop="39877"/>
          <exon e_start="38777" e_stop="38657"/>
          <exon e_start="38569" e_stop="38501"/>
          <exon e_start="38417" e_stop="38335"/>
          <exon e_start="37642" e_stop="37574"/>
          <exon e_start="37484" e_stop="37422"/>
          <exon e_start="37296" e_stop="37148"/>
          <exon e_start="36389" e_stop="36062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACTAAAAGAGAGAAAAAAAAGAATGTTAAAGAGCAATAAAACGGCGTCGTGTGAAGCTGCATTATCTTCTCCATTGCTGCTTCTGAGCTGAACGAAATGGCTTCAACGTTATCTTCTCGTCTCCCACGTCTTCCTTCCAAAACGGTATTCCCACATTCTAACTCCGGTTCAACTCTCCTCCACTTCACATCCAAAACCCGGTTCGATCAGTCCCGGTTTAGATGCTCGGCGGGTCAAACGGGGTTCTTCACGAAGCTTGGTCGTTTGCTGAAAGAGAAAGCCAAGAGTGATGTGGAGAAACTGTTCTCAGGATTCTCAAAAACTCGAGACAATTTAGCTGTTATTGATGAACTCCTCCTTTACTGGAACCTTTCTGATACTGATCGTGTTCTTGATGAACTTGAAGAGGTTTAGTTCCAAATACCCTTTCGATTCTTGCTAAAACTGAAATTGAAAATTACGGTCTGAGATGTTGTTTTAGTTTATAGGAGAAGAAAATGTCGAAGTAATGATTGAAAAGTTACATGCTAGGGGTACTTAAAATTTTGAATAATTTCATAATATTGTGTTTGTGGAAGTCGCATAAAATGAGTAAGTGCAAATGATTTTGCATAAATTGAGATGAGAGGACTACTCTCTTTGAGTTTCCGTTGCTATTTTTGCTAATCTGAGCAATTTTTCGTGTGGTTCCTTAGGTATTTTATGATTTTTCGATGTACATTCCTGATGATTTTCACCTTTGCCCACTATTTGCTGCAAAATTATGTCACAGTCTTAATTATTTGAAACAGGGTTTAAATAATAATTTGGACCGTCTCTCAGCATGGCGTAGTGCTTCCCTTTGTCGTGCTATAATTGCTGTGGAAAGTGGAATTAATATATTATAAAGCTACACGTTATTTAGAGTTGAATGGGAAGTTTTACATCTTTACATATGAACTTCCAGGGAAAGGGAAAGTTTCTTCTTCGATATAGAAACTGTCTCAAATGAATGATCCTGATCCTTATGCCGAGATTAGTATCACTATTTGGTGTCTTGCATTACCTAGTATATTTATGTCCAAATACTGATCGTGCAGTTACTTTAGCTAATTGAATTATTATTTTCTGGCACATGCAAGTGTTGAGGATTGAGACAATCTTCAACTGTGGTTTCAGGTTCTGTTGGTCGCTGATTTTGGGCCGAAGATTACCATAAAGATTGTGGAGAGCTTGCGGGAGGATATATATGCAGGGAAAATCAAATCAGGAAGTGAGATAAAAGTAAGCATGCTGAGATATTCAATTTTTTTCAGTAACACACTGGTCTATGCAATATGCTGTTTTAGAAATAAAACTATTTCATTCAATTTGTTCACGGGGAAAACTAATGACGGCTCATGCTCTACGCATAGTAGTTTTACACATTTATTTTATTGCTTGTTTGTTAATTTTCTGTTTTTCTTGCGTATGGATGTGTTGATTTTGTGAAATGCAATGATATGATATGAAGAGTGTTCTAAAGAAGAGTATCTTGGATCTATTGACTAGTAAAGCACCTAAAACAGAACTCAGTCTGGGCTTCAGGTTTCAACTGCTTTACTAATTTAAATTTTACATTTATCTTAAACTTGTCTTTTAGTGGAGTGAACTAAAATTTGGTGCTTGCTTTTATGTACTAGGAAACCAGCTGTAATCATGATTGTGGGTGTCAATGGAGGTGGGAAGACAACATCTCTTGGTAAGGGAACTAATTTTTGTTTCATGGTAAACCTTCATATTGTTGGTTGGTAAATGAGTCAATGTGCAAGAAAGAAAAGCTGTTATATGTTTGTGGCAACAGTGAAATTTCTCTAAAATCCATTTTTATTGCAAATTTGAGTAGTACTTTTGCCTTTTTTTCTTAATCCTCTTGAGAACATTTGATTTGTAATAATGAGTAGTAAGAGGAGCAAAAAATTCTGGGATGTTCATCACATATTCAACAATTTAAAAATGGCAGTAACTCATGACGGTAACTCTTTTTCTACTAATGCAGGAAAGTTGGCAAATAGGTTGAAGAGAGAAGGGGCAAAGGTGAGGCGAACTGTTATCTTGTAGCTGGCAGCTATGCTGCAGAACTATTAGTGCAAGCCACTTTTCTGTATCACTAAAATATCACTGTGTATTAACAAATATTTCCAGTCAAATTTCTCCAGTGTGCATTAGGTTATGTTTGAAATGATAATTACCAATATTTGTTTTGATTAAAGTATGGCATTGCATTTTAAAGAAATTTTTGGGGCAAGGTTAGACTTGTTAGATATGCTGAAGCTTAAACTCTAGGACTCCAGGCACTGACTCCTCATCTGCTAATATGGAAACATGCTATCGAAATTGGTGGTGTTGAAAGCTTTTATGTTCTTGAGTTGGTTTGAGGAACTGACACAATCATTAGGTTGATCTGTCAAGAAATATCTTGATTAAACTGAAACGAAGGAAGATATTCCTATGGCTGCCTTCCAACCTTGTGAAAATCTTCATACTCATAAGTCATAACAGTAAATATATCTTGGGATATGCTTTCCATTATTAAACCTTAACAACTTGAAACATTTCATGATCCTTCCCTTCGCTTTGAGGACAAGTGCTGATAGTTTTCCTTACGGTCACCAGTAAGTTTTATGTATTCTTTGTTGAATGCCTTGAATCGGACCCGTTACAGCAGAAAGAACGGGGGTCTTGTTGTATTGGGCCCTTAATTATCTGTCAATTCTGTATTTTGGGCCCAAGCCTGTTAGGGCATAGCTTAGCACTATATATAGACGCTATGGCAAACCCTATTCTGTTCTTGTCTCTCCATAATAAAACTGCTCCCCCTCTTCCCCGTGGACGTAGCCAATTTATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTATTATCTCGAATTCCGCATAACATTCTTGTTGTGTAAATCTCTCATTCTTTTACAATCCTATGATATTTAATCACAAAGGAAATTGGTTCTCAGGATATAGTATTTGTTACATTATGAAAAACTCACTCAAACATTCTTCTCTGCCACTTAATTAGAATTAGATGCTATTAGCAGCTGGTGATACATTCTTCTCTACTCATGACAGGATAACTCCTGCTTCTCACACTTCCATTCTGTGGTCTTTCTGCAGATACTATTAGCAGCTGGTGATACATTTAGAGCAGCTGCTAGTGATCAGTTAGAAATCTGGGCTGAAAGGACTGGTTGTGAGATTGTTGTTGCTGAAAAAGAGAAAGCTAAGGCATCGTCAGGTAGCGCTAGACACTAACCCAAATAAAAATGTCAGTGGAAACTTTACTTCTTCCTAATCAAGTGATCTTGAAGTTCTTCCTGAGTAGTTATTTCACAGGCTGTTAAAAGAGGAAAGGAAGAGGGTTTCGATATTGTTTTATGCGACACATCTGGCCGTAAGCTTTGTGAATATGAAAACAACTTTCTTATTCACACTTATAGAGTATCTCTGAGTAACCAAAATTGATAATTTTACCAGGTTTGCACACCAACTATAGCTTGATGGAGGAATTGGTGGCATGCAAAAAAGTTGTCAGTAAAATTGTTAATGGTGCACCTAATGTATGTTAAACTTGAACTCTTTAGCTTTTTTCTTTATTTTACTGTTAAACATCCATCGCGGCTTGTCCCATCTTTTGGAGAACTTGTGATGTTTAAGCATACAATGGAGTCCCTATAATGTACACAAAAGTACTTCTTAACATAACCTATAGTATGTAATGAAGTACCAATTTGAGTTTTAGTGCAAGATCTATTCCCACATTATGAAGTACCAATGTTATGGATTCAAAACATACAAGACCCTTTTCAAGGAAAAATAAAATAGCAGGATTTTAGATAAATTTGATTCTTCATGGGATTTCAGAGCATCTGAAGAGAGCATGGAATAATACTATACAGCTATTTGGTGATGCATTTGGAAAGATAGGAATACGAGGTGTTTTAAACGACAAAAGAACTCAATATTGAAGATCAAGTTAGATTGTATTTTTTGATATCTTTTCAAGTGTAAACATGAATGGGTACAATAGTGAAACCCTATTAAAGTTATTGGAATCTTTTGTATGCATAACCATGGTTGTTTTATCCTTTTACCTTTCTTAGTTATTGGCTCCTCTTTGTCATCTAAAATCCAATTTCCCGCCCATTCTATTTACCGTGCTTAAATTCTTTTTAGACTGACCTAAACTTCTCTTGTTGCTGAATGGAAAACCCTTGTCATAATGTAAGAATAACATATTGAACTTTTGCAGGAAATCTTGCTAGTACTGGATGGAACGACTGGTTTAAATATGCTTCCTCAAGCAAGAGAGTTTAATGAGGTAATGACCCTTGTCAGCTTGTTATTCTGAACCTCTATATGTTGCATTAATTAGTTCAAGGTTCTTCATGAAATTGCCTTCTTCTCTAGGTTGTTGGAATCACTGGGTTAATATTGACTAAACTTGATGGTTCTGCTCGAGGTGGCTGTGTGGTATACTTTGAATTCTCCAAATTTAGCTCATTTTTCTTTTATGATTTTGTTGTGGTTAAATTTGTCTCTCTTAAAAACTGAGAAATTGCAACTAGTTAAATGATCTCAAACTTCTCGCATTGCAGGTCAGTGTGGTTGATGAGCTTGGTATTCCTGTAAAATTTGTAGGTGTTGGGGAAGGTGTAGATGACCTCCAACCATTCAATGCTGAGGAATTTGTTGATGCTATCTTCCCATGAGGCATGATTCAGTGACAGTTTCTCCTATATTCTAAGTATGTCACTATATTAAATATTATGGCATATGACTGTGTGGTCTTCCAATCTGTATTTAGTTTGAGTTTTTATGGTGATAGAAAATGTCAAATCCCAAAACTAATCTATATATTCTTGGCATCTCAAACTGATAGTTAGGTGAGGAACTAGTACGGCTACAAGACAAATGAGAACACTTTTCTAACGGAATGCTGTTTGTCATAACAGTGTCAATATGACCAATACAGTCTATAAGATTCTGGAAACATTCATTTATTATTTGTGCAGTTCTAGTTAGTATATCAACTATGGGAGCCTAAAATCCTAGTGTGGTATATTTCCTTATTTCGGAGATAATCTCACTTAGTGTAGATCAATGTGAATACTTTAGAATCAAGAGTATCCAGAGTGAGGAGTAGCTGTCAATGAAACCGGAATGAAGACCATTAGAATTTAGGTTCAAATCCAGTTTAAAGCAAAAACTTATTTGGTGATTTCTTTCCATTTGCTTGAATTTGATGGGTAGAGTTACTGGGGAATCAATGCATCATTCTATTATTTACTGTATAACAATCCATGTAGTATAATTCCTATACAAATAGTTCGTGCAGTGGGAACATATAATATATGATTTACTGTAAATTACCAAACTAAAGCAATCAAATATTCTGACACTAGCTTGATGCTAAAGAATGCCTTACTCTTGGTTCTGGTAGTATCATTTTCTCATCGTACAATAAGCAATAGCTTTAATACCATAATTATTTTTTCGTCTCAGGTGAACTCTCTGGTGTTAACAAGACACAAACATTTTGGCGAGAGAGGAGTAATGAGACATTAGAAATTTTTGTCTTTAACAGAACGTGTGCCTTATGCTCCTTTGTTTATCTAGATCTGCTCTATTTCATTGAGGATGTGTCATCAGAAGAGACACTTAGTTGTCCAGTACGACTGATGCCATTAGTTGCATCGCCTTTTTTTAAAATCAAAAGATCAGTGTCATCTCCTTGTCATTGTTGCAGTATTAAGTAGTAATACAGCATTGTAGTTAAAGTGGAGTTTCATTGGACACACAGCTAATACAAGATTGATTTGCATGATTTTCT</genome_strand>
        <mrna_strand>GAAAACTAAAAGAGAGAAAAAAACGAATGTTAAAGAGCAATAAAACGGCGTCGTGTGAAGCTGCATTATCTTCTCCATTGCTGCTTCTGAGCTGAACGAAATGGCTTCAACGTTATCTTCTCGTCTCCCACGTCTTCCTTCCAAAACGGTATTCCCACATTCTAACTCCGGTTCAACTCTCCTCCACTTCACATCCAAAACCCGGTTCGATCAGTCCCGGTTTAGATGCTCGGCGGGTCAAACGGGGTTCTTCACGAAGCTTGGTCGTTTGCTGAAAGAGAAAGCCAAGAGTGATGTGGAGAAACTGTTCTCAGGATTCTCAAAAACTCGAGACAATTTAGCTGTTATTGATGAACTCCTCCTTTACTGGAACCTTTCTGATACTGATCGTGTTCTTGATGAACTTGAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGTTGGTCGCTGATTTTGGGCCGAAGATTACCATAAAGATTGTGGAGAGCTTGCGGGAGGATATATATGCAGGGAAAATCAAATCAGGAAGTGAGATAAAA.....................................................................................................................................................................................................................................AGTGTTCTAAAGAAGAGTATCTTGGATCTATTGACTAGTAAAGCACCTAAAACAGAACTCAGTCTGGGCTTCAG...............................................................................................GAAACCAGCTGTAATCATGATTGTGGGTGTCAATGGAGGTGGGAAGACAACATCTCTTG.........................................................................................................................................................................................................................................................................................................GAAAGTTGGCAAATAGGTTGAAGAGAGAAGGGGCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTATTAGCAGCTGGTGATACATTTAGAGCAGCTGCTAGTGATCAGTTAGAAATCTGGGCTGAAAGGACTGGTTGTGAGATTGTTGTTGCTGAAAAAGAGAAAGCTAAGGCATCGTCAG.......................................................................................TTATTTCACAGGCTGTTAAAAGAGGAAAGGAAGAGGGTTTCGATATTGTTTTATGCGACACATCTGGCC...................................................................................GTTTGCACACCAACTATAGCTTGATGGAGGAATTGGTGGCATGCAAAAAAGTTGTCAGTAAAATTGTTAATGGTGCACCTAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCTTGCTAGTACTGGATGGAACGACTGGTTTAAATATGCTTCCTCAAGCAAGAGAGTTTAATGAG.........................................................................................GTTGTTGGAATCACTGGGTTAATATTGACTAAACTTGATGGTTCTGCTCGAGGTGGCTGTGTG.............................................................................................................................GTCAGTGTGGTTGATGAGCTTGGTATTCCTGTAAAATTTGTAGGTGTTGGGGAAGGTGTAGATGACCTCCAACCATTCAATGCTGAGGAATTTGTTGATGCTATCTTCCCATGAGGCATGATTCAGTGACAGTTTCTCCTATATTCTAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACTCTCTGGTGTTAACAAGACACAAACATTTTGGCGAGAGAGGAGTAATGAGACATTAGAAATTTTTGTCTTTAACAGAACGTGTGCCTTATGCTCCTTTGTTTATCTAGATCTGCTCTATTTCATTGAGGATGTGTCATCAGAAGAGACACTTAGTTGTCCAGTACGACTGATGCCATTAGTTGCATCGCCTTTTTTTAAAATCAAAAGATCAGTGTCATCTCCTTGTCATTGTTGCAGTATTAAGTAGTAATACAGCATTGTAGTTAAAGTGGAGTTTCATTGGACACACAGCTAATACAAGATTGATTTGCATGAATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596404" ref_strand="+" ref_description="SGN-U596404 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157349224|emb|CAO24370.1| (e_value=5e-25) unnamed; (*ATH) AT2G45770.1 (e_value=2e-26)  Symbol: None | signal recognition particle receptor protein, chloroplast (FTSY), similar to Cell division protein ftsY homolog (SP:O67066) {Aquifex aeolicus}; contains Pfam PF00448: SRP54-type protein, GTPase domain contains TIGRFAM TIGR00064: signa... ; ">
      <seq>ctttcaaaacggtattcccacattctaggtccggttcaactctcctccactctccatccagaagccggtgcgatcagtcccggtttagatgctcggcgggtcaaacggggttcttcacgaagcttggtcgtttgctgaaagagaaagccaagagtgatgtggagaaactgttctcaggattctcaaaaactcgagacaatttagctgttattgatgaactcctcctttactggaacctttctgatactgatcgtgttcttgatgaacttgaagaggttctgttggtcgctgattttgggccgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="-" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="42098" stop="40445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41798" g_stop="41524" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41523" i_stop="40774" i_length="750">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40773" g_stop="40745" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="304" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="-" ref_id="SGN-U596404" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U596404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41798" e_stop="41524"/>
          <exon e_start="40773" e_stop="40745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCAAAACGGTATTCCCACATTCTAACTCCGGTTCAACTCTCCTCCACTTCACATCCAAAACCCGGTTCGATCAGTCCCGGTTTAGATGCTCGGCGGGTCAAACGGGGTTCTTCACGAAGCTTGGTCGTTTGCTGAAAGAGAAAGCCAAGAGTGATGTGGAGAAACTGTTCTCAGGATTCTCAAAAACTCGAGACAATTTAGCTGTTATTGATGAACTCCTCCTTTACTGGAACCTTTCTGATACTGATCGTGTTCTTGATGAACTTGAAGAGGTTTAGTTCCAAATACCCTTTCGATTCTTGCTAAAACTGAAATTGAAAATTACGGTCTGAGATGTTGTTTTAGTTTATAGGAGAAGAAAATGTCGAAGTAATGATTGAAAAGTTACATGCTAGGGGTACTTAAAATTTTGAATAATTTCATAATATTGTGTTTGTGGAAGTCGCATAAAATGAGTAAGTGCAAATGATTTTGCATAAATTGAGATGAGAGGACTACTCTCTTTGAGTTTCCGTTGCTATTTTTGCTAATCTGAGCAATTTTTCGTGTGGTTCCTTAGGTATTTTATGATTTTTCGATGTACATTCCTGATGATTTTCACCTTTGCCCACTATTTGCTGCAAAATTATGTCACAGTCTTAATTATTTGAAACAGGGTTTAAATAATAATTTGGACCGTCTCTCAGCATGGCGTAGTGCTTCCCTTTGTCGTGCTATAATTGCTGTGGAAAGTGGAATTAATATATTATAAAGCTACACGTTATTTAGAGTTGAATGGGAAGTTTTACATCTTTACATATGAACTTCCAGGGAAAGGGAAAGTTTCTTCTTCGATATAGAAACTGTCTCAAATGAATGATCCTGATCCTTATGCCGAGATTAGTATCACTATTTGGTGTCTTGCATTACCTAGTATATTTATGTCCAAATACTGATCGTGCAGTTACTTTAGCTAATTGAATTATTATTTTCTGGCACATGCAAGTGTTGAGGATTGAGACAATCTTCAACTGTGGTTTCAGGTTCTGTTGGTCGCTGATTTTGGGCCGAA</genome_strand>
        <mrna_strand>CTTTCAAAACGGTATTCCCACATTCTAGGTCCGGTTCAACTCTCCTCCACTCTCCATCCAGAAGCCGGTGCGATCAGTCCCGGTTTAGATGCTCGGCGGGTCAAACGGGGTTCTTCACGAAGCTTGGTCGTTTGCTGAAAGAGAAAGCCAAGAGTGATGTGGAGAAACTGTTCTCAGGATTCTCAAAAACTCGAGACAATTTAGCTGTTATTGATGAACTCCTCCTTTACTGGAACCTTTCTGATACTGATCGTGTTCTTGATGAACTTGAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGTTGGTCGCTGATTTTGGGCCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582992" ref_strand="+" ref_description="SGN-U582992 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|157349225|emb|CAO24371.1| (e_value=2e-39) unnamed; (*ATH) AT2G45760.1 (e_value=5e-21) | Symbol: None | BON1-associated protein (BAP1)-related, similar to BON1-associated protein 1 BAP1 (Arabidopsis thaliana) GI:15487384; contains Pfam profile PF00168: C2 domain | chr2:18854081-18854895 REVERSE | Aliases: F4I18.26; ">
      <seq>atacacatactataataattacaatgaagccattatcatcttcttcgcgtttgttagaaataacggtaatgtcgggcgagaatcttctagataacagaaatcgaccggtgaagaagaacgccttcgtaaatatcaaaacagaatcttattcatgcaacctccaaacaactaaactggataaagaaggtggaggttttccaaagtggaacgagaaattgatcgttgatttgccaatgcatgcgcggcatctaacggtggaggttcaatgtaaaaattcctccgggatcaaaaccgttgggatcgcaaaagttccgacgtcggattttattggaggaattttgcccgaagattatttgcattttttgagttataggcttaggaatgaaaagggggagaagaatgggataattaatttttctgttagggttaaaaatgcggcggcgccgtctcaaagtgcggccggctgcgctgcggcttatacgaaggccgcaccggtggatatgggaagtagttataacggttcttgtgggattgttacgggtttgcccgtttatccggggaattttctaggtaattcaatggcgaagagattttaaatttttgttcttttatttattttatcaaattgaatttgtatagacatgtttaggatgaatttgataactgctttactcgacagaaagttatgtcgtgtttattaattaatagtctatcaattcaaaatcataaaatatcatngatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="+" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="45708" stop="47052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46008" g_stop="46752" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="745" r_length="745" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="+" ref_id="SGN-U582992" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46008" e_stop="46752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACACATACTATAATAATTACAATGAAGCCATTATCATCTTCTTCGCGTTTGTTAGAAATAACGGTAATGTCGGGCGAGAATCTTCTAGATAACAGAAATCGACCGGTGAAGAAGAACGCCTTCGTAAATATCAAAACAGAATCTTATTCATGCAACCTCCAAACAACTAAACTGGATAAAGAAGGTGGAGGTTTTCCAAAGTGGAACGAGAAATTGATCGTTGATTTGCCAATGCATGCGCGGCATCTAACGGTGGAGGTTCAATGTAAAAATTCCTCCGGGATCAAAACCGTTGGGATCGCAAAAGTTCCGACGTCGGATTTTATTGGAGGAATTTTGCCCGAAGATTATTTGCATTTTTTGAGTTATAGGCTTAGGAATGAAAAGGGGGAGAAGAATGGGATAATTAATTTTTCTGTTAGGGTTAAAAATGCGGCGGCGCCGTCTCAAAGTGCGGCCGGCTGCGCTGCGGCTTATACGAAGGCCGCACCGGTGGATATGGGAAGTAGTTATAACGGTTCTTGTGGGATTGTTACGGGTTTGCCCGTTTATCCGGGGAATTTTCTAGGTAATTCAATGGCGAAGAGATTTTAAATTTTTGTTCTTTTATTTATTTTATCAAATTGAATTTGTATAGACATGTTTAGGATGAATTTGATAACTGCTTTACTCGACAGAAAGTTATGTCGTGTTTATTAATTAATAGTCTATCAATTCAAAATCATAAAATATCATTGATCATG</genome_strand>
        <mrna_strand>ATACACATACTATAATAATTACAATGAAGCCATTATCATCTTCTTCGCGTTTGTTAGAAATAACGGTAATGTCGGGCGAGAATCTTCTAGATAACAGAAATCGACCGGTGAAGAAGAACGCCTTCGTAAATATCAAAACAGAATCTTATTCATGCAACCTCCAAACAACTAAACTGGATAAAGAAGGTGGAGGTTTTCCAAAGTGGAACGAGAAATTGATCGTTGATTTGCCAATGCATGCGCGGCATCTAACGGTGGAGGTTCAATGTAAAAATTCCTCCGGGATCAAAACCGTTGGGATCGCAAAAGTTCCGACGTCGGATTTTATTGGAGGAATTTTGCCCGAAGATTATTTGCATTTTTTGAGTTATAGGCTTAGGAATGAAAAGGGGGAGAAGAATGGGATAATTAATTTTTCTGTTAGGGTTAAAAATGCGGCGGCGCCGTCTCAAAGTGCGGCCGGCTGCGCTGCGGCTTATACGAAGGCCGCACCGGTGGATATGGGAAGTAGTTATAACGGTTCTTGTGGGATTGTTACGGGTTTGCCCGTTTATCCGGGGAATTTTCTAGGTAATTCAATGGCGAAGAGATTTTAAATTTTTGTTCTTTTATTTATTTTATCAAATTGAATTTGTATAGACATGTTTAGGATGAATTTGATAACTGCTTTACTCGACAGAAAGTTATGTCGTGTTTATTAATTAATAGTCTATCAATTCAAAATCATAAAATATCATNGATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594676" ref_strand="+" ref_description="SGN-U594676 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157349225|emb|CAO24371.1| (e_value=4e-20) unnamed; (*ATH) AT2G45760.1 (e_value=1e-12) | Symbol: None | BON1-associated protein (BAP1)-related, similar to BON1-associated protein 1 BAP1 (Arabidopsis thaliana) GI:15487384; contains Pfam profile PF00168: C2 domain | chr2:18854081-18854895 REVERSE | Aliases: F4I18.26; ">
      <seq>cacacgctggcaagaaaagtagagataaaatttctttctactacatggttatacaaattcaattacgataaaataaataaaagaccaaaagtttaaaatctcttccccattgaaatacttagaagattccccggataaacgggcaaagcccgaaacaatcccacaagaaccgttataactacttgccatatccaccggtgcggccttcgtataaaccgcagcgcagcctgccgtactttgagacggcgccgccgcatttttaaccctaacagaaaaattaattatcccattcttctcccccttttcattcctaagcctataactcaaaaaatgcaaataatcttcgggcaaaattcctccaataaaatccgacgtcggaacttttgcgatcccaacggttttgatcccggaggaatttatacattgaacctgcaccgttagatgccgcgcatgcattggcaaatcaacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="-" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="46952" stop="45926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46650" g_stop="46226" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="471" r_length="427" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="-" ref_id="SGN-U594676" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46650" e_stop="46226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTATACAAATTCAATT-TGATAAAATAAATAAAAGAACAAAAATTTAAAATCTCTTCGCCATTGAATTACCTAGAAAATTCCCCGGATAAACGGGCAAA-CCCGTAACAATCCCACAAGAACCGTTATAACTACTTCCCATATCCACCGGTGCGGCCTTCGTATAAGCCGCAGCGCAGCCGGCCGCACTTTGAGACGGCGCCGCCGCATTTTTAACCCTAACAGAAAAATTAATTATCCCATTCTTCTCCCCCTTTTCATTCCTAAGCCTATAACTCAAAAAATGCAAATAATCTTCGGGCAAAATTCCTCCAATAAAATCCGACGTCGGAACTTTTGCGATCCCAACGGTTTTGATCCCGGAGGAATTTTTACATTGAACCTCCACCGTTAGATGCCGCGCATGCATTGGCAAATCAACGAT</genome_strand>
        <mrna_strand>ATGGTTATACAAATTCAATTACGATAAAATAAATAAAAGACCAAAAGTTTAAAATCTCTTCCCCATTGAAATACTTAGAAGATTCCCCGGATAAACGGGCAAAGCCCGAAACAATCCCACAAGAACCGTTATAACTACTTGCCATATCCACCGGTGCGGCCTTCGTATAAACCGCAGCGCAGCCTGCCGTACTTTGAGACGGCGCCGCCGCATTTTTAACCCTAACAGAAAAATTAATTATCCCATTCTTCTCCCCCTTTTCATTCCTAAGCCTATAACTCAAAAAATGCAAATAATCTTCGGGCAAAATTCCTCCAATAAAATCCGACGTCGGAACTTTTGCGATCCCAACGGTTTTGATCCCGGAGGAATTTATACATTGAACCTGCACCGTTAGATGCCGCGCATGCATTGGCAAATCAACGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601968" ref_strand="+" ref_description="SGN-U601968 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157349230|emb|CAO24376.1| (e_value=3e-44) unnamed; (*ATH) AT3G61180.1 (e_value=3e-38)  Symbol: None | zinc finger (C3HC4-type RING finger) family protein, low similarity to RNF6 protein (Mus musculus) GI:20530241; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) | chr3:22656541-22658642 FORWARD | Aliases: T20K12.80... ; (*SWP) sp|Q9LN71|RING1_ARATH (e_value=5e-36) E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760; ">
      <seq>gagattgactaaatacaagtttcgaagacttggtaaatttgaaaaacaaaatggcgagattcaagaatcatttggaggagtaatgactgaatgtgacactgatacacccattgagcatgttcttccattggaagatgccgaatgttgcatctgcctttgtccctatgaagatggaattgagctgcgtgagctcccttgtcgtcaccattttcactctgtctgcatagacaagtggttgtacatgaacgcaacttgtcctctttgcaagttcaatatacttaaaaatggcaaccagagcagcagtgaagaagcataagactgtaaatgcctgccatcaaaacgaagatcttgttgtacttatgggtgttcataccatattcacccatcctagcattcgcttctctcgtcatgttgtagtgtgtatttttgtgggcttacatgtttgtataactttcttgtatatcacgtgtagatgtcctatttaatctcagtgacatgtatgaaatctcataatcttganngtagtgagtgataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="-" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="48398" stop="47156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48098" g_stop="47960" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47959" i_stop="47852" i_length="108">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47851" g_stop="47456" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="535" r_length="396" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="-" ref_id="SGN-U601968" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U601968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48098" e_stop="47960"/>
          <exon e_start="47851" e_stop="47456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTGACTAAATACAAGTTTCGAAGACTTGGTAAATTTGAAAAACAAAATGGCGAGATTCAAGAATCATTTGGAGGAGTAATGACTGAATGTGACACTGATACACCCATTGAGCATGTTCTTCCATTGGAAGATGCCGTGCGTTCGATAAATTTCTTGCTTTGAATTAGATTTTTCCATAAACCCTGGGATTAACTTCCCAATCCTCTTATAGGAGTTAATTTCATTCATTCTTGTCTGTTGCAGGAATGTTGCATCTGCCTTTGTCCCTATGAAGATGGAATTGAGCTGCGTGAGCTCCCTTGTCGTCACCATTTTCACTCTGTCTGCATAGACAAGTGGTTGTACATGAACGCAACTTGTCCTCTTTGCAAGTTCAATATACTTAAAAATGGCAACCAGAGCAGCAGTGAAGAAGCATAAGACTGTAAATGCCTGCCATCAAAACGAAGATCTTGTTGTACTTATGGGTGTTCATACCATATTCACCCATCCTAGCATTCGCTTCTCTCGTCATGTTGTAGTGTGTATTTTTGTGGGCTTACATGTTTGTATAACTTTCTTGTATATCACGTGTAGATGTCCTATTTAATCTCAGTGACATGTATGAAATCTCATAATCTTGAAGGTAGTGAGTGATAA</genome_strand>
        <mrna_strand>GAGATTGACTAAATACAAGTTTCGAAGACTTGGTAAATTTGAAAAACAAAATGGCGAGATTCAAGAATCATTTGGAGGAGTAATGACTGAATGTGACACTGATACACCCATTGAGCATGTTCTTCCATTGGAAGATGCC............................................................................................................GAATGTTGCATCTGCCTTTGTCCCTATGAAGATGGAATTGAGCTGCGTGAGCTCCCTTGTCGTCACCATTTTCACTCTGTCTGCATAGACAAGTGGTTGTACATGAACGCAACTTGTCCTCTTTGCAAGTTCAATATACTTAAAAATGGCAACCAGAGCAGCAGTGAAGAAGCATAAGACTGTAAATGCCTGCCATCAAAACGAAGATCTTGTTGTACTTATGGGTGTTCATACCATATTCACCCATCCTAGCATTCGCTTCTCTCGTCATGTTGTAGTGTGTATTTTTGTGGGCTTACATGTTTGTATAACTTTCTTGTATATCACGTGTAGATGTCCTATTTAATCTCAGTGACATGTATGAAATCTCATAATCTTGANNGTAGTGAGTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582233" ref_strand="+" ref_description="SGN-U582233 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>aaaagtaactttgatagaccatcacatccaagtttaaaagttgaacgcccccaaagcctagctcgagtggcaaaagtggaggatttgtggcttaggtcacaggctcaagccccacaccatgcaaagcgaagtctggtatttaagtggagaggggtagaggggcgggcccattatccaccgagtttagaaagttgtgatggaccgaagagccggtcacatgcggatttctcggtcattaaaaataaaaaagtttaaaagctgaacaatgttaatgaatttgatttcttgaaagttgtatagaaatagactggtgtcaaatacttgtgaaaaatggaatggtgtaaaatattttaaatgtcgaaaaatggaaaatgtcacctagattgaaatagagggaacaatacagtttcttgtacctatatcctctggataaagaaccaactgcttgccattttccacccgaatgacgaactaaattgtatgttcccgatacaagggcattgtagacatttattagctcctgcctcctgctatcttagtttaggttgtatacatgtataggagctaacaactttttgtacttactgcaccttcttgatgcatgtcaatgaatgatttcattgaaaaaaaaataagaggtctctacggtctagtacaaaagcaaactacagaattgagatgaagatagaatataaaatagagcatctacgctaaccatgagttcaaaaaaagagtgttaattagaaagcatatagaatacaaagggatgacaccaaagcatacgatatccagaaacatacttacacatctatttctagcactctcagactgtcttttagctgataattggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="+" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="48897" stop="50328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49183" g_stop="50035" g_length="853"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="854" r_length="854" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="+" ref_id="SGN-U582233" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49183" e_stop="50035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTAACTTTGATAGAGAAACCATCACATCCAAGTTTAAAAGTTGAACGCCCCCAAGGCCTAGCTCGAGTGGCAAAGGTGGAGGATTTGTGGCTTAGGTCACAGGCTCAAGCCCCACACCATGCAAAGCGAAGTCTGGTATTTAAGTGGAGAGGGGTAGAGGGGCGGGCCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGACCGAAGAGCCGGTCACAGGCGGATTTCTCGGTCATCAAAAATAAAAAAAGTTTAAAAGCTGAACAATGTTAATGAATTTGATTTCTTGAAAGTTGTATAGAAATAGACTGGTGTCAAATACTTGTGAAAAATGGAATGGTGTAAAATATTTTAAATGTCGAAAAATGGAAAATGTCACCTAGATAGAAATAGAGGGAAC---A-A---T-TTATACCTATATCCTCTGGATAAGGAACCAACTGCTTGCCATTTTCCACCCGAATGACAAACTAAACTGTATGTTCCCGATACAAGGACATTGTAGACATTTATTAGCTCCTGCCTCCTGCTATCTTAGTTTAGGTTGTATACATGTATAGGAGCTAACAACTTTTTGTACTTACTGCACCTTCTTGATGCATGTCAATGAATGATTTCATTGAAAAAAAAAATAAGAGGTCTCTATGGTCTAGTACAAAAGCAAACTACAGAGTTGAGATGAAGATAGCATATAAAATAGAGCATCTACGCTAACCATGAGTTCAAAAAAGAGGTGTTAATTAG-AAGCATAATAGAATACAAAGGGATGACACAAAAGCATAAGATATCCAG-AACATACTTGCACAATCTATTTCTAGCACTCTCAGACTGTCTTTTAGCTGATAATCTCAAGA</genome_strand>
        <mrna_strand>AAAAGTAACTTTGAT--AG--ACCATCACATCCAAGTTTAAAAGTTGAACGCCCCCAAAGCCTAGCTCGAGTGGCAAAAGTGGAGGATTTGTGGCTTAGGTCACAGGCTCAAGCCCCACACCATGCAAAGCGAAGTCTGGTATTTAAGTGGAGAGGGGTAGAGGGGCGGGCCCATTATCCACCGAGTTTAGAAAGTTGTGA-TGGACCGAAGAGCCGGTCACATGCGGATTTCTCGGTCATTAAAAAT-AAAAAAGTTTAAAAGCTGAACAATGTTAATGAATTTGATTTCTTGAAAGTTGTATAGAAATAGACTGGTGTCAAATACTTGTGAAAAATGGAATGGTGTAAAATATTTTAAATGTCGAAAAATGGAAAATGTCACCTAGATTGAAATAGAGGGAACAATACAGTTTCTTGTACCTATATCCTCTGGATAAAGAACCAACTGCTTGCCATTTTCCACCCGAATGACGAACTAAATTGTATGTTCCCGATACAAGGGCATTGTAGACATTTATTAGCTCCTGCCTCCTGCTATCTTAGTTTAGGTTGTATACATGTATAGGAGCTAACAACTTTTTGTACTTACTGCACCTTCTTGATGCATGTCAATGAATGATTTCATTG-AAAAAAAAATAAGAGGTCTCTACGGTCTAGTACAAAAGCAAACTACAGAATTGAGATGAAGATAGAATATAAAATAGAGCATCTACGCTAACCATGAGTTCAAAAAAAGAGTGTTAATTAGAAAGCAT-ATAGAATACAAAGGGATGACACCAAAGCATACGATATCCAGAAACATACTTACAC-ATCTATTTCTAGCACTCTCAGACTGTCTTTTAGCTGATAATTGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582129" ref_strand="+" ref_description="SGN-U582129 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|147777193|emb|CAN65431.1| (e_value=8e-48) hypothetical; (*ATH) AT1G12760.1 (e_value=2e-44)  Symbol: None | similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:At1g63170.1); similar to putative RES protein [Oryza sativa (japonica cultivar-group)] (GB:XP_477996.1); contains InterPro domain Zn-finger, R... ; (*SWP) sp|Q9LN71|RING1_ARATH (e_value=2e-43) E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760; ">
      <seq>ataaacagtataattttagtactttcatccagaactttgaatttcttctttctcaaaattttctaaattacaatagttcaccgtcgatcctttctcggtcaattttatattctggtgacgatgtcgacggcgagagccggtaatgacgatagttctaatggtgtagatacgactccgttgcttaccgatcaggtttttaggagccgacggttggcgcgccgggccccgaccctaagaggagcggctcgatttctccggcgagcaagtaaccaccgactgatgcgggagccgtcaaggcgcgtgagggaagctgcagctgagcacatagaggaacgacaaagcgattgggcatattccaaacctatagtgatattggatcttatctggaacttagcttttgtgattgtctcagtttctgtgttgattctgagccatgatgagttaccttctatgcctttgaggctttggattgttggatatgctttacagtgtttgcttcacatggtttgtgtttgcgttgagtatagacgccgaattcagcttagcgattcatctccaattttgaattccgagcagagaaacgctgctggaggttggaacagttcgagttccggaagtgacagcggtgaaactggtgattatcagtctgaggggcgtcagaatgaggatgaaattagtgtagctaagcatctggaatctgcaaataccatgttttctttcatttggngnnnnantggtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="-" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="52150" stop="50079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51850" g_stop="51174" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51173" i_stop="50430" i_length="744">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.300" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50429" g_stop="50364" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="743" r_length="66" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="-" ref_id="SGN-U582129" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51850" e_stop="51174"/>
          <exon e_start="50429" e_stop="50364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAACAGTATAATTTTAGTACTTTCATCCAGAACTTTGAATTTCTTCTTTCTCAAAATTTTCTAAATTACAATAGTTCACCGTCGATCCTTTCTCGGTCAATTTTATATTCTGGTGACGATGTCGACGGCGAGAGCCGGTAATGACGATAGTTCTAATGGTGTAGATACGACTCCGTTGCTTACCGATCAGGTTTTTAGGAGCCGACGGTTGGCGCGCCGGGCCCCGACCCTAAGAGGAGCGGCTCGATTTCTCCGGCGAGCAAGTAACCACCGACTGATGCGGGAGCCGTCAAGGCGCGTGAGGGAAGCTGCAGCTGAGCACATAGAGGAACGACAAAGCGATTGGGCATATTCCAAACCTATAGTGATATTGGATCTTATCTGGAACTTAGCTTTTGTGATTGTCTCAGTTTCTGTGTTGATTCTGAGCCATGATGAGTTACCTTCTATGCCTTTGAGGCTTTGGATTGTTGGATATGCTTTACAGTGTTTGCTTCACATGGTTTGTGTTTGCGTTGAGTATAGACGCCGAATTCAGCTTAGCGATTCATCTCCAATTTTGAATTCCGAGCAGAGAAACGCTGCTGGAGGTTGGAACAGTTCGAGTTCCGGAAGTGACAGCGGTGAAACTGGTGATTATCAGTCTGAGGGGCGTCAGAATGAGGATGAAATTAGGTATAATTTCTCTTTGGAGGCATGTGATTTGCTGAGATTTTTTTTCCGGTGGCACGAGTAAATCTTGCTGTTGTTCATAGTTAGCACAGTAGTTGTTAATGCTGTTGTTTTTATCATTTCATTGATTTAATGGAGAAGGGTTTGTTTGTTAGGTTAGGATAGGCATTTTGAGTTGAATACGGAGCAGTATGTATAGTATCTGGTCCAGGTATAAGTTGCTTAGGTTGCTGGAAACGAATTAGTATTGGAAATCGATATTCCTAGTGCATTTGAAAGACATAGGAACTGGTCTGTCAGGTTGGAGAAAGATACTCTTGACTTCTCAACACTGCGGAGTCAAAATTTTCATTAAGGGTTCAAATTATGAAGAAGTTGAAGAGGGTTCAATATCTACTATATATATGTAAATGTACATTAGAAAATAATTTTCACCATGTGTAATTATCTGCCGAAGGATGAACTCGCTGGACCCTTACTAGCTCTGCCCCTGTTTCTTAAGATGTGACTATGAGGCTTGAGGTTATTGAAATTGATGCCTGTGGTGGATAATGAAAGCTTGTCCGTAGTTTTCAAGGAAAAAGATTAAAATAAAGAGAAAAAAGAGTTTGTTGTCAAAGAGTGTCACAATACCTCATTGGTAGTTATTTCCTGTATTTCCTGCCAGTAGCTCATTGTTTCCAGAGGACTGGAAATCATATAGTTGTGCCTCATAATCTATTAGTGATTCTTAACATATTATTTCAGTGTAGCTAAGCATCTGGAATCTGCAAATACCATGTTTTCTTTCATTTGGTGGATAATTGGTTTCTA</genome_strand>
        <mrna_strand>ATAAACAGTATAATTTTAGTACTTTCATCCAGAACTTTGAATTTCTTCTTTCTCAAAATTTTCTAAATTACAATAGTTCACCGTCGATCCTTTCTCGGTCAATTTTATATTCTGGTGACGATGTCGACGGCGAGAGCCGGTAATGACGATAGTTCTAATGGTGTAGATACGACTCCGTTGCTTACCGATCAGGTTTTTAGGAGCCGACGGTTGGCGCGCCGGGCCCCGACCCTAAGAGGAGCGGCTCGATTTCTCCGGCGAGCAAGTAACCACCGACTGATGCGGGAGCCGTCAAGGCGCGTGAGGGAAGCTGCAGCTGAGCACATAGAGGAACGACAAAGCGATTGGGCATATTCCAAACCTATAGTGATATTGGATCTTATCTGGAACTTAGCTTTTGTGATTGTCTCAGTTTCTGTGTTGATTCTGAGCCATGATGAGTTACCTTCTATGCCTTTGAGGCTTTGGATTGTTGGATATGCTTTACAGTGTTTGCTTCACATGGTTTGTGTTTGCGTTGAGTATAGACGCCGAATTCAGCTTAGCGATTCATCTCCAATTTTGAATTCCGAGCAGAGAAACGCTGCTGGAGGTTGGAACAGTTCGAGTTCCGGAAGTGACAGCGGTGAAACTGGTGATTATCAGTCTGAGGGGCGTCAGAATGAGGATGAAATTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGCTAAGCATCTGGAATCTGCAAATACCATGTTTTCTTTCATTTGGNGNNNNANTGGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574092" ref_strand="+" ref_description="SGN-U574092 Tomato 200607#2 [28 ESTs aligned] (*GB) gi|50812411|gb|AAT81407.1| (e_value=0) shaggy-related protein kinase 6 [Lycopersicon peruvianum]; (*ATH) AT4G00720.1 (e_value=0) | Symbol: None | shaggy-related protein kinase theta / ASK-theta (ASK8), identical to shaggy-related protein kinase theta (ASK-theta) (Arabidopsis thaliana) SWISS-PROT:Q96287 | chr4:293641-297297 REVERSE | Aliases: F6N23.11, F6N23_11; (*SWP) sp|Q96287|KSG8_ARATH (e_value=0) Shaggy-related protein kinase theta OS=Arabidopsis thaliana GN=ASK8; ">
      <seq>ggatttatttttatttttatgataaaaggagaggagagagagtgggaagaggctttatgttgtcatattttctcaatttggcatttcaaagtctaatttctctatcttgtttgtttttctctctttctctctccctcctccatcttcaccattgaagaaaaatacttttcaggtgtttgaggaagaagagaaggacttatcaattactctcgaaaaattttcaaggaccgctcagaggggtttttcttttgggctcttggcgaagcagagatgaatgtcatgcgtcgccttaagagcattgcttctggacgttcttctgtttcagatcctggtggtgattcaagcataaagagggtgaaggttgagaaagaagtagatcaaagagtggttggtgaaactcaaatggaagagggatgtacaactactacagttccaaaggaagacatggcttctacatctatggaaaccactgctggaagtacctcaacaatggatattagacttgaaaattctgaacttgatgaacttcctaaagaaatgcatgaaatgaaaattaaggatgaaaaagatgataaagctgatagtctagatgataatttgaaggatatggaacctgctgttgttagtggaaatggaacagaaactggtcagattattgtgactactgtgagtggtaggaatggacaagagaaacagacattgtcttacatggcggagcgcgtggttggcactggttcatttggagttgtctttcaggctaagtgcttggaaactggtgaatctgttgcaataaagaaggtcttacaggataggagatacaagaacagggaacttcagattatgcgcacacttgatcatcctaatgttgttaaactacgacactgcttctattctactactgagaagaatgaagtctaccttaaccttgtcctggaatacgtgtctgaaactgtttaccgagtatcaaggcactacagcagaatgaaccaacacatgcccaatatatatgtgcagctatacacataccagatatgccgtgctctgaattacatgcatggtgtccttggtgtatgccatcgtgatattaaaccacagaatcttttggttaatccccactcgcatcagctaaagctctgtgattttggtagtgcaaagatgttggtgcctggagagcccaacatatcatacatttgttctcgttattatcgggctcctgaattgatctttggtgctactgagtacacaactgcaattgacatgtggtctgctggttgcgttatggctgagctacttttgggacagcctcttttccctggagaaagtggcgttgatcagctggtcgaaatcatcaagatattggggacaccaacaagagaggagattaggtgcatgaatccaaattacacagagttcaagtttccccagatcaaagctcacccatggcacaagatatttcataaaagaatgccccctgaagcagttgatttggtgtcgaggcttctccaatattctccaactctacgctgcactgctttggaagcatgtgcacaccctttctttgattctttaagggaaccaaatgcttgcttgccaaatgggcgacctctgcctcccctattcaacttttcacctcaagagctctctggcgtgcctgctgaactgcgaaagcgccttattcctgaacacttgcgcaagtgaattttgtgaagacagttgcttaggctttgtaaatgggtttttcttgagaggtgtagttgcccaatcagcgttatgttgctccagcaaatgcagctgctttcttggccttagtaatatttgatggaatacaacatcataacatgggagctagttacttgctagttggtttcggatgacggatatgacagtaagatttgcgggtgatttatcgcagtgtctctcgtctttataaacatattatgttcagtaccccagtagttttagatgagagttttcatctgttaatttataccttttagcaagcaatatctagtttgaggggtattcataagattaatgagtgctcccaaacttggagttatagatgaatgattaggagttttatattcattaaagtataacatttcatgtcttctggttgccctatagaaatgtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="-" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="64721" stop="59816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64421" g_stop="64092" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64091" i_stop="63440" i_length="652">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63439" g_stop="63167" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="603" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63166" i_stop="63065" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63064" g_stop="62972" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="696" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62971" i_stop="62871" i_length="101">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62870" g_stop="62811" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="756" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62810" i_stop="62699" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62698" g_stop="62426" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="1029" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62425" i_stop="62290" i_length="136">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62289" g_stop="62215" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1030" r_stop="1104" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62214" i_stop="62041" i_length="174">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62040" g_stop="61984" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1105" r_stop="1161" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="61983" i_stop="61897" i_length="87">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="61896" g_stop="61756" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1162" r_stop="1302" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="61755" i_stop="61479" i_length="277">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="61478" g_stop="61428" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1303" r_stop="1353" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="61427" i_stop="61322" i_length="106">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="61321" g_stop="61226" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1354" r_stop="1449" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="61225" i_stop="61062" i_length="164">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.752" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="61061" g_stop="60978" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1450" r_stop="1533" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="60977" i_stop="60794" i_length="184">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="60793" g_stop="60691" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1534" r_stop="1636" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="60690" i_stop="60617" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="60616" g_stop="60116" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1637" r_stop="2137" r_length="501" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="-" ref_id="SGN-U574092" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2137</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64421" e_stop="64092"/>
          <exon e_start="63439" e_stop="63167"/>
          <exon e_start="63064" e_stop="62972"/>
          <exon e_start="62870" e_stop="62811"/>
          <exon e_start="62698" e_stop="62426"/>
          <exon e_start="62289" e_stop="62215"/>
          <exon e_start="62040" e_stop="61984"/>
          <exon e_start="61896" e_stop="61756"/>
          <exon e_start="61478" e_stop="61428"/>
          <exon e_start="61321" e_stop="61226"/>
          <exon e_start="61061" e_stop="60978"/>
          <exon e_start="60793" e_stop="60691"/>
          <exon e_start="60616" e_stop="60116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTATTTTTATTTTTATGATAAAAGGAGAGGAGAGAGAGTGGGAAGAGGCTTTATGTTGTCATATTTTCTCAATTTGGCATTTCAAAGTCTAATTTCTCTATCTTGTTTGTTTTTCTCTCTTTCTCTCTCCCTCCTCCATCTTCACCATTGAAGAAAAATACTTTTCAGGTGTTTGAGGAAGAAGAGAAGGACTTATCAATTACTCTCGAAAAATTTTCAAGGACCGCTCAGAGGGGTTTTTCTTTTGGGCTCTTGGCGAAGCAGAGATGAATGTCATGCGTCGCCTTAAGAGCATTGCTTCTGGACGTTCTTCTGTTTCAGATCCTGTAATTTTCCTTTTTTCTTTCTCTCCATATGGGTGTAAAACCCAGATACTTTATGATTGATTTATATTTAATTTTCTTTTTGTTGCTAAAATGGGTCTATAAGGTGAATGGAGAGAAGTGATTCGTAGTGTCTGAACCACTGCAGTTGACAAATTTAAGGAAACTGAGAGAAATTAATGGGTTTTTTTCTTCTGATTATGATTTGTAAATCAAAGACATAAAAGATGTAGTGTTTTTGAATTTGGGAATTTAAATTCTTAGGTTTTTTTGTTGACTTTATTTTGGGGTAGTTGAAAAAAATGTGTTGAATGCTTCTTTAATGGTTAGATTTTCACCATTTTAGCTCTAAATATGTGCGAGTTATGCTATAAAAAGTGAGGCTTTAAAGAGTTTGGGCTTTAAAGAAGGTAGATGCTATTTGATGGATCATTTACTCATGTGACTAATAATTTTAACAAACTTTATTTTGGCTTGGGGTAGGCGAGGACTGTTAATATCTGGCTGTTGTGTTCTAGATTTTGATAGTATGGAGTATGGACTTGTAATGCAATGATAGGAGTTATAATGGAAACATGTAGCTTGGTTTTTGTTTGTTGTATTTTGATTAGATTTATGAGTAATTCATGAAAAGAGTATGATTTATTTTTAATAGGGTGGTGATTCAAGCATAAAGAGGGTGAAGGTTGAGAAAGAAGTAGATCAAAGAGTGGTTGGTGAAACTCAAATGGAAGAGGGATGTACAACTACTACAGTTCCAAAGGAAGACATGGCTTCTACATCTATGGAAACCACTGCTGGAAGTACCTCAACAATGGATATTAGACTTGAAAATTCTGAACTTGATGAACTTCCTAAAGAAATGCATGAAATGAAAATTAAGGATGAAAAAGATGATAAAGCTGATAGTCTAGATGATAATTTGAAGGTATACCCAAGTTTTATCTCTTTTATGTTAAATTTAGTATGTAAAGTAGCTGTGTCTTTAAATTCTTAAATTTGTCTGGCTGATCTATCTTGCATCCTGTAGGATATGGAACCTGCTGTTGTTAGTGGAAATGGAACAGAAACTGGTCAGATTATTGTGACTACTGTGAGTGGTAGGAATGGACAAGAGAAACAGGTGAACTAGTTGAATGAAATCTAATTTCTCCTTACCCCCAATATAGTTTTATAGGCTTTTATCTTCGCTCAATCAGATGTCGACTTGTGCTATTTTCACAGACATTGTCTTACATGGCGGAGCGCGTGGTTGGCACTGGTTCATTTGGAGTTGTCTTTCAGGTATAGTTGTATGTTCATCTAATGTTTATTGATAATGTTAGGTTGGTGTGTTAGCATTGCTGTTGTCTGGATGACTTTTGTTGATTTATTCATCACCTTTTCTATTTCACAGGCTAAGTGCTTGGAAACTGGTGAATCTGTTGCAATAAAGAAGGTCTTACAGGATAGGAGATACAAGAACAGGGAACTTCAGATTATGCGCACACTTGATCATCCTAATGTTGTTAAACTACGACACTGCTTCTATTCTACTACTGAGAAGAATGAAGTCTACCTTAACCTTGTCCTGGAATACGTGTCTGAAACTGTTTACCGAGTATCAAGGCACTACAGCAGAATGAACCAACACATGCCCAATATATATGTGCAGCTATACACATACCAGGTGAGCTTATTGCAGGATTCTTCATTTTTTCTCATCAAGATTGTGGAGTTTCAAATTCTAGCAACTTAAATTACTTGTCTTGTAAACTATCTTGAGCACAGAGTTGTGAATTTTCTCTAAATTATAAATTTTACAGATATGCCGTGCTCTGAATTACATGCATGGTGTCCTTGGTGTATGCCATCGTGATATTAAACCACAGAATCTTTTGGTGAGCACTCAATTTTCCCACAGAATATGCTTTTTTTAGATCTTTCATTTGCATGCCAAAATGACTTGAAATATTTTGAGCAACCCCTGTAGTGCGGTTAAGTGGAGTTATGTCTTTTCTCTTCACCTCTCCTCTATTTGACCTGACTATTTTATGCTTATTTAACTTCTGAAGGTTAATCCCCACTCGCATCAGCTAAAGCTCTGTGATTTTGGTAGTGCAAAGATGTTGGTACGTGTTGATTCTTTTTTAAAGAAGAATTCTTTTTTCCCTTTACAATTAAGCAGTCCCTAATATTTTAACCTTTGTTTTTTCTAGGTGCCTGGAGAGCCCAACATATCATACATTTGTTCTCGTTATTATCGGGCTCCTGAATTGATCTTTGGTGCTACTGAGTACACAACTGCAATTGACATGTGGTCTGCTGGTTGCGTTATGGCTGAGCTACTTTTGGGACAGGTTAGTTGATACTTATAATCACAATTCATGGTCCTATTCTTTTCATTGGTGGTGATGTAATCTCTAGAATTTTTTGCGTTTCACTTTTCACTGTTTCTGTTTCAAGTTAGATTCCATTAATGGTGTTAAGATAAATTCCTTCTGAGCAATCAAATTTTCTTATTTAGAAGATTCAAAGAAATAATAATTAAATAGAAATATATAATCTGGTGAGATTGCACTGTTTGTAGACTTGAATCCACTAGTCTCTGACATTTTAGTGATGTATTATCTGCAGCCTCTTTTCCCTGGAGAAAGTGGCGTTGATCAGCTGGTCGAAATCATCAAGGTAAGAAATCAAGGGACTCTAAAATAGTTTACGTCGGGTGATAATTCTCTAGTCAAGTTGGTTGCTTTCTCTTGCTAACCGTTTTGGTGTACTTTGTGCTTGCCAGATATTGGGGACACCAACAAGAGAGGAGATTAGGTGCATGAATCCAAATTACACAGAGTTCAAGTTTCCCCAGATCAAAGCTCACCCATGGCACAAGGTTAGTGAAAACTCACTCTGTGGATGTGGCTGCTTCACTAGTAGTTAAATTATTTCCATCCTTCCCTTGATGAATTTTGTTGAAAACTGTCCTTTCAAATTGCTCAATCACATGCCAAAACACAATGCAAGCATACCAAATCTTAATGAGATTGCAATCTGCAGATATTTCATAAAAGAATGCCCCCTGAAGCAGTTGATTTGGTGTCGAGGCTTCTCCAATATTCTCCAACTCTACGCTGCACTGCTGTAAGTAAAAAGTTTTCTTCTCAATTATCAAGTATTTAGGATATTCTGGTAGTTTCCCATTTTACCCATCATTCAAACATGGTGTTCCAATTTTGTTATGTTTCAATATGCGAGTTCTCATTGATTGTCCTTTTAGCACTTCTGTTTTCCGGGGATATTGAGAACATTTTGTGTTTATTGACAGTTGGAAGCATGTGCACACCCTTTCTTTGATTCTTTAAGGGAACCAAATGCTTGCTTGCCAAATGGGCGACCTCTGCCTCCCCTATTCAACTTTTCACCTCAAGGTGAGCTTCAGTTTAGTTTTTCCTTTTATTTCACATGATTTGATACGTCAATCTGATTAGTCTGTCTTATACAGAGCTCTCTGGCGTGCCTGCTGAACTGCGAAAGCGCCTTATTCCTGAACACTTGCGCAAGTGAATTTTGTGAAGACAGTTGCTTAGGCTTTGTAAATGGGTTTTTCTTGAGAGGTGTAGTTGCCCAATCAGCGTTATGTTGCTCCAGCAAATGCAGCTGCTTTCTTGGCCTTAGTAATATTTGATGGAATACAACATCATAACATGGGAGCTAGTTACTTGCTAGTTGGTTTCGGATGACGGATATGACAGTAAGATTTGCGGGTGATTTATCGCAGTGTCTCTCGTCTTTATAAACATATTATGTTCAGTACCCCAGTAGTTTTAGATGAGAGTTTTCATCTGTTAATTTATACCTTTTAGCAAGCAATATCTAGTTTGAGGGGTATTCATAAGATTAATGAGTGCTCCCAAACTTGGAGTTATAGATGAATGATTAGGAGTTTTATATTCGTTAAAGTATAACATTTCATGTCTTCTGGTTGCCCTATAGAAATGTGAAA</genome_strand>
        <mrna_strand>GGATTTATTTTTATTTTTATGATAAAAGGAGAGGAGAGAGAGTGGGAAGAGGCTTTATGTTGTCATATTTTCTCAATTTGGCATTTCAAAGTCTAATTTCTCTATCTTGTTTGTTTTTCTCTCTTTCTCTCTCCCTCCTCCATCTTCACCATTGAAGAAAAATACTTTTCAGGTGTTTGAGGAAGAAGAGAAGGACTTATCAATTACTCTCGAAAAATTTTCAAGGACCGCTCAGAGGGGTTTTTCTTTTGGGCTCTTGGCGAAGCAGAGATGAATGTCATGCGTCGCCTTAAGAGCATTGCTTCTGGACGTTCTTCTGTTTCAGATCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGATTCAAGCATAAAGAGGGTGAAGGTTGAGAAAGAAGTAGATCAAAGAGTGGTTGGTGAAACTCAAATGGAAGAGGGATGTACAACTACTACAGTTCCAAAGGAAGACATGGCTTCTACATCTATGGAAACCACTGCTGGAAGTACCTCAACAATGGATATTAGACTTGAAAATTCTGAACTTGATGAACTTCCTAAAGAAATGCATGAAATGAAAATTAAGGATGAAAAAGATGATAAAGCTGATAGTCTAGATGATAATTTGAAG......................................................................................................GATATGGAACCTGCTGTTGTTAGTGGAAATGGAACAGAAACTGGTCAGATTATTGTGACTACTGTGAGTGGTAGGAATGGACAAGAGAAACAG.....................................................................................................ACATTGTCTTACATGGCGGAGCGCGTGGTTGGCACTGGTTCATTTGGAGTTGTCTTTCAG................................................................................................................GCTAAGTGCTTGGAAACTGGTGAATCTGTTGCAATAAAGAAGGTCTTACAGGATAGGAGATACAAGAACAGGGAACTTCAGATTATGCGCACACTTGATCATCCTAATGTTGTTAAACTACGACACTGCTTCTATTCTACTACTGAGAAGAATGAAGTCTACCTTAACCTTGTCCTGGAATACGTGTCTGAAACTGTTTACCGAGTATCAAGGCACTACAGCAGAATGAACCAACACATGCCCAATATATATGTGCAGCTATACACATACCAG........................................................................................................................................ATATGCCGTGCTCTGAATTACATGCATGGTGTCCTTGGTGTATGCCATCGTGATATTAAACCACAGAATCTTTTG..............................................................................................................................................................................GTTAATCCCCACTCGCATCAGCTAAAGCTCTGTGATTTTGGTAGTGCAAAGATGTTG.......................................................................................GTGCCTGGAGAGCCCAACATATCATACATTTGTTCTCGTTATTATCGGGCTCCTGAATTGATCTTTGGTGCTACTGAGTACACAACTGCAATTGACATGTGGTCTGCTGGTTGCGTTATGGCTGAGCTACTTTTGGGACAG.....................................................................................................................................................................................................................................................................................CCTCTTTTCCCTGGAGAAAGTGGCGTTGATCAGCTGGTCGAAATCATCAAG..........................................................................................................ATATTGGGGACACCAACAAGAGAGGAGATTAGGTGCATGAATCCAAATTACACAGAGTTCAAGTTTCCCCAGATCAAAGCTCACCCATGGCACAAG....................................................................................................................................................................ATATTTCATAAAAGAATGCCCCCTGAAGCAGTTGATTTGGTGTCGAGGCTTCTCCAATATTCTCCAACTCTACGCTGCACTGCT........................................................................................................................................................................................TTGGAAGCATGTGCACACCCTTTCTTTGATTCTTTAAGGGAACCAAATGCTTGCTTGCCAAATGGGCGACCTCTGCCTCCCCTATTCAACTTTTCACCTCAAG..........................................................................AGCTCTCTGGCGTGCCTGCTGAACTGCGAAAGCGCCTTATTCCTGAACACTTGCGCAAGTGAATTTTGTGAAGACAGTTGCTTAGGCTTTGTAAATGGGTTTTTCTTGAGAGGTGTAGTTGCCCAATCAGCGTTATGTTGCTCCAGCAAATGCAGCTGCTTTCTTGGCCTTAGTAATATTTGATGGAATACAACATCATAACATGGGAGCTAGTTACTTGCTAGTTGGTTTCGGATGACGGATATGACAGTAAGATTTGCGGGTGATTTATCGCAGTGTCTCTCGTCTTTATAAACATATTATGTTCAGTACCCCAGTAGTTTTAGATGAGAGTTTTCATCTGTTAATTTATACCTTTTAGCAAGCAATATCTAGTTTGAGGGGTATTCATAAGATTAATGAGTGCTCCCAAACTTGGAGTTATAGATGAATGATTAGGAGTTTTATATTCATTAAAGTATAACATTTCATGTCTTCTGGTTGCCCTATAGAAATGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573542" ref_strand="-" ref_description="SGN-U573542 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>aggtgcacttcaatgagaaaggtaatatttgagacaaggagaacaacaatattttaatatatttttttttaataatatatagtttaattagtagaaagaccattgttaggtggtaagggccggctcaactagctcgaggtgttattaatttggtgttcaacacaaagcaaaggtggtggttcgggtattgactcagggtactaatatcagttggttcatgaatgaatcagcttttgggtgaaaattttcaatttggacaagttgtgtgacagaattatgtcaatttcagaagctatggtttgtttttgatgaatttatagttgtttgttgaagagtcataatggctcttttgttttgtatgttatggtgggggacaattgacaaatcaactattgtacgttatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="-" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="85092" stop="83987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84792" g_stop="84696" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84695" i_stop="84595" i_length="101">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84594" g_stop="84287" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="406" r_length="308" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="-" ref_id="SGN-U573542" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573542" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84792" e_stop="84696"/>
          <exon e_start="84594" e_stop="84287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGCACTTCAATGCGAAAGCTAATATTTGAGACAAGGAGAACAAC-TTTTTTTAATATATTTTTTTTTAATAATATATAGTTTAACTAGTAGAAAGAAAAAAAAAAAGTGGTGCGGTAATGGAAGGAGTGGAGGCTTGATCATTGAAGAACTCGAGCTGAATTGGAGGCTGAGTCAAGAACGAACCGCGCTGAAAAGACCATTGCTAGGTGGTAAGGGCCGGCTCAACTAGCTCGAGGTGTTATTAATTTGGTGTTCAACACAAAGCAAAGGTGGTGGTTCGGGTATTGACTCAGGGTACTAATATCAGTTGGTTCATGAATGAATCAGCTTTTGGGTGAAAATTTTCAATTTGGACAAGTTGTGTGACAGAATTATGTCAATTTCAGAAGCTATGGTTTGTTTTTGATGAATTTATAGTTGTTTGTTGAAGAGTCATAATGGCTCTTTTGTTTTGTATGTTATGGTGGGGGACAATTGACAAATCAACTATTGTACGTTATCTT</genome_strand>
        <mrna_strand>AGGTGCACTTCAATGAGAAAGGTAATATTTGAGACAAGGAGAACAACAATATTTTAATATATTTTTTTTTAATAATATATAGTTTAATTAGTAGAAAG.....................................................................................................ACCATTGTTAGGTGGTAAGGGCCGGCTCAACTAGCTCGAGGTGTTATTAATTTGGTGTTCAACACAAAGCAAAGGTGGTGGTTCGGGTATTGACTCAGGGTACTAATATCAGTTGGTTCATGAATGAATCAGCTTTTGGGTGAAAATTTTCAATTTGGACAAGTTGTGTGACAGAATTATGTCAATTTCAGAAGCTATGGTTTGTTTTTGATGAATTTATAGTTGTTTGTTGAAGAGTCATAATGGCTCTTTTGTTTTGTATGTTATGGTGGGGGACAATTGACAAATCAACTATTGTACGTTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583997" ref_strand="+" ref_description="SGN-U583997 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157349233|emb|CAO24379.1| (e_value=2e-172) unnamed; (*ATH) AT4G00730.1 (e_value=6e-145) | Symbol: None | anthocyaninless2 (ANL2), nearly identical to Anthocyaninless2 (Arabidopsis thaliana) GI:5702094 | chr4:299359-304486 REVERSE | Aliases: F6N23.10, F6N23_10; (*SWP) sp|Q0WV12|ANL2_ARATH (e_value=6e-144) Homeobox-leucine zipper protein ANTHOCYANINLESS 2 OS=Arabidopsis thaliana GN=ANL2; ">
      <seq>gatgtttgattgctagaacctcaacaacagatgttatatcaagtggtatgggtggaaccagaaatggtgcacttcaactgatgcatgctgaactccaagtgctttcaccattagtaccaattaaagaggtcaatttcctgcgtttctgcaaacaacatgctgaaggtgtctgggctgtcattgatgtatcgattgataccatccgtgaaacttctggtgcaccaacgtttccaaatagcagaaggcttccttctggctgtgttgttcaagatatgcccaatggctacagcaaagttacatgggtagaacatgccgaatatgaagagggtgcaaatcaccatctttaccggcagttaattagcgcgggtatggggtttggcgcacaaagatgggttgcaaccctccaacgccagtgtgagtgtcttgcaattctcatgtcatccaccgtgtctgccagggatcatacagcaataactccaagtgggaggcgtagcatgttgaagctagcacaacgcatgacaaacaacttttgtgctggtgtttgtgcttcaacggtacacaagtggaacaaactttgtgcaggtaatgttgatgaagatgtacgtgtcatgactcgaaagagcgtctatgaccctggtgaaccagcagggatcgtcttaagcgctgctacttccgtttggttgcccgtttcccctcaaagactctttgatttcctccgtgacgaacgcctccgtagcgaatgggatatcctatccaacggtggccctatgcaagaaatggctcatattgccaaaggccaagatcatggcaactgcgtctctctccttcgtgctagtgctatgaacgcgaatcagagcagcatgttgatacttcatgagacttgcatagacgcggctggggcgcttgttgtatacgcgccagttgatattccggcaatgcacgtggtgatgaacggtggaaattcggcttacgtggctttgcttccttcgggattctcaattgtacccgacggcccaagatcttgtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="-" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="88349" stop="84657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88050" g_stop="87971" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87970" i_stop="87870" i_length="101">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87869" g_stop="87657" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="293" r_length="213" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87656" i_stop="86273" i_length="1384">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86272" g_stop="86098" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="468" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86097" i_stop="85972" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85971" g_stop="85604" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="836" r_length="368" r_score="0.997"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85603" i_stop="85149" i_length="455">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85148" g_stop="84957" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="837" r_stop="1028" r_length="192" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="-" ref_id="SGN-U583997" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1028</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U583997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88050" e_stop="87971"/>
          <exon e_start="87869" e_stop="87657"/>
          <exon e_start="86272" e_stop="86098"/>
          <exon e_start="85971" e_stop="85604"/>
          <exon e_start="85148" e_stop="84957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTTTGATTGCTAGAACCTCAACAACAGATGTTATATCAAGTGGTATGGGTGGAACCAGAAATGGTGCACTTCAGCTGGTAAATTAAAATGAACCTTTGTTTGTAGTTAAATCAAATGTTATTATTATTATTATTAGTCAATGTTGAAATATGATTTTTTTTTTCTTGATTCTTTATAGATGCATGCTGAACTCCAAGTGCTTTCACCATTAGTACCAATTAGAGAGGTCAATTTCCTGCGTTTCTGCAAACAACATGCTGAAGGTGTCTGGGCTGTCGTTGATGTATCGATTGATACCATCCGTGAAACTTCTGGTGCACCAACGTTTCCAAATAGCAGAAGGCTTCCTTCTGGCTGTGTTGTTCAAGATATGCCCAATGGCTACAGCAAAGTAAGTTCTCTATGAATAAATTCAATTGTCTATATTCGGTTAACTCTATTCACAAAGACTTTTCTCTCTTCTACTAGTGTGTCGTTTAGTACTATATATTCAATGAGTTTACATTCATGGGGTAGCTACTATTTTGCTTTTTGTGTTTAATGAGTTTGGTTGAGCAACTACAAATTTTTGGATCTTAGTTCAGAACATTGATTTGGTTTTTTTTCCCCACCTAATTTGGATTGTCAAAATGACTAAAAGCTTTAGTAGTCTTTTTTGGTTATTTGGTCCAAAACCAAAAAGATTAGATTATTGAACCTGATAAGATGCTGATTATAGGGGACATAACAGTATTAAAAAGTCATCAAATATCAGCAACTTACTTCCTGCTTAAGATGAGCTTAATACTAATATTATATGAACACCGTACGTGTGGAAATCGAGGTTAAGGACGAGTTAATTAATCTAATAAATTGAATAGAAGTCTCCATTACTTATATTTTTGTGCCTTGGGACACATTAATTTCATATGATTCTTCAGAAAATAATTTAAAAAAAATTAAATTAAAAATTTGCTTTGTAACTTTCAAGCATTGGTTTAATTAAACAATGTATTTGATGTTTCTATTCCAATCTCTGATGCTGTCTCGATCAGTCCCCCGTGTATATAATTAATTCATCTAACTGTGTATTATCTGGTTCCAGCCTTGTGATGTGTTTGTTTTTTATACTATACTAATGAAGGACTCTTTTTAGTCAAACAACAAGACTGACTACATTATTTTTTGTTGTCACGTGAGTATCTACAGAGTCTAAAAGCTTTGTGGTACATTTCTCAATGTCTCAAACCTAACCTCGTGCCTTCAAATTTGCATAAAAATGGTGAAAACTTGTATTTTTATGACTTCTAATTTTAGGGTTCTAGGTTCTATCATGTCTCTCCTTGAACCTAACTTTGCTATAGAAACCATTTCCAAGATTTGTCCTGTTGCATCACAAAAATTTCCCATTTAGTAATGTACTTATTTTTTTATTCTTTTTCTAATTTTTGGGGTTTTTAAAACATGTTTGGATTAAAATAAATCTATACTAATAGCACTAATAAGTTAGGTGACGTTATTCATGGTCTAAATGTTTGAATTCATTTGTCACAACTAACTTTGCTCAGGAGTTGTAATTATTTGCCTATGTGATAAATACTTGTCATAAATTACTCTATAATTTAAATGTAGTCGATAATAAATTCAATGCATATGATCATTAATTTACTATGTAACGAGGGAAAATTGTGACAACAATTGATTAACTCCCCTTGTGATTATTATTATTATGCTCTAATTTATTCCAAGCAAGTTCAGACCGACTAAATAAATTCTGACGGTTAATAATTATGTAGGTTACATGGGTAGAACATGCCGAATATGAAGAGGGTGCAAATCACCATCTTTACCGGCAGTTAATTAGCGCGGGTATGGGGTTTGGCGCACAAAGATGGGTTGCAACCCTCCAACGCCAGTGTGAGTGTCTTGCAATTCTCATGTCATCCACCGTGTCTGCCAGGGATCATACAGGTAACTAATTAAAATCTATATTTTTGTGAAACTGTTCAATGAATCAACCTCTATCATGTGATGAGTAGTAGACCCTTATATTTTGTGTGACCAAATTTAAATTTTAAGAAATCAAATCACATGCAGCAATAACTCCAAGTGGGAGGCGTAGCATGTTGAAGCTAGCACAACGCATGACAAACAACTTTTGTGCTGGTGTTTGTGCTTCAACGGTACACAAGTGGAACAAACTTTGTGCAGGTAATGTTGATGAAGATGTACGTGTCATGACTCGAAAGAGCGTCGATGACCCTGGTGAACCAGCAGGGATCGTCTTAAGCGCTGCTACTTCCGTTTGGTTGCCCGTTTCCCCTCAAAGACTCTTTGATTTCCTCCGTGACGAACGCCTCCGTAGCGAATGGGATATCCTATCCAACGGTGGCCCTATGCAAGAAATGGCTCATATTGCCAAAGGCCAAGATCATGGCAACTGCGTCTCTCTCCTTCGTGCTAGTGTAATTTCCTCAACCCTTTCTTTTTTCTTTTTTTTTTTTATGAAAAAATTAATTTTGAATGGATAGAGATAATGCATGGCGATTTATACATATGAATGCATGTAAAAAGATTGATTGATTATGCATGTGTGGGGTTCATTTTCTTGTAAGATAAAAATAAAATTGTTGATTGAAAAGGACAAACTAGGGGGATTTGGAAGTATCTCAAAAGGACCATCTTATTCCAGATCTATAAATTTTTAACTTTGTTGCATCTTTTGTAAATTTGTAAAAAGTCAAAACACATGATACATGTTACCTTTTTATTTTAGTCAGCCCTACTATGATATCACCCTTTTTACATGAAAAAGTCTTCAAACACTGCAACAAACAACTGACGTATTATATATACCACACAATGGCATTATTCGTAAATATATTCATAACCAAGGGGCTTTGTATTGATCTATTGCCAGGCTATGAACGCGAATCAGAGCAGCATGTTGATACTTCAGGAGACTTGCATAGACGCGGCTGGGGCGCTTGTTGTATACGCGCCAGTTGATATTCCGGCAATGCACGTGGTGATGAACGGTGGAGATTCGGCTTACGTGGCTTTGCTTCCTTCGGGATTCTCAATTGTACCCGACGGCCCAGGATCTCGTGGG</genome_strand>
        <mrna_strand>GATGTTTGATTGCTAGAACCTCAACAACAGATGTTATATCAAGTGGTATGGGTGGAACCAGAAATGGTGCACTTCAACTG.....................................................................................................ATGCATGCTGAACTCCAAGTGCTTTCACCATTAGTACCAATTAAAGAGGTCAATTTCCTGCGTTTCTGCAAACAACATGCTGAAGGTGTCTGGGCTGTCATTGATGTATCGATTGATACCATCCGTGAAACTTCTGGTGCACCAACGTTTCCAAATAGCAGAAGGCTTCCTTCTGGCTGTGTTGTTCAAGATATGCCCAATGGCTACAGCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACATGGGTAGAACATGCCGAATATGAAGAGGGTGCAAATCACCATCTTTACCGGCAGTTAATTAGCGCGGGTATGGGGTTTGGCGCACAAAGATGGGTTGCAACCCTCCAACGCCAGTGTGAGTGTCTTGCAATTCTCATGTCATCCACCGTGTCTGCCAGGGATCATACAG..............................................................................................................................CAATAACTCCAAGTGGGAGGCGTAGCATGTTGAAGCTAGCACAACGCATGACAAACAACTTTTGTGCTGGTGTTTGTGCTTCAACGGTACACAAGTGGAACAAACTTTGTGCAGGTAATGTTGATGAAGATGTACGTGTCATGACTCGAAAGAGCGTCTATGACCCTGGTGAACCAGCAGGGATCGTCTTAAGCGCTGCTACTTCCGTTTGGTTGCCCGTTTCCCCTCAAAGACTCTTTGATTTCCTCCGTGACGAACGCCTCCGTAGCGAATGGGATATCCTATCCAACGGTGGCCCTATGCAAGAAATGGCTCATATTGCCAAAGGCCAAGATCATGGCAACTGCGTCTCTCTCCTTCGTGCTAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGAACGCGAATCAGAGCAGCATGTTGATACTTCATGAGACTTGCATAGACGCGGCTGGGGCGCTTGTTGTATACGCGCCAGTTGATATTCCGGCAATGCACGTGGTGATGAACGGTGGAAATTCGGCTTACGTGGCTTTGCTTCCTTCGGGATTCTCAATTGTACCCGACGGCCCAAGATCTTGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575143" ref_strand="+" ref_description="SGN-U575143 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157349233|emb|CAO24379.1| (e_value=4e-96) unnamed; (*ATH) AT4G00730.1 (e_value=2e-80) | Symbol: None | anthocyaninless2 (ANL2), nearly identical to Anthocyaninless2 (Arabidopsis thaliana) GI:5702094 | chr4:299359-304486 REVERSE | Aliases: F6N23.10, F6N23_10; (*SWP) sp|Q0WV12|ANL2_ARATH (e_value=2e-79) Homeobox-leucine zipper protein ANTHOCYANINLESS 2 OS=Arabidopsis thaliana GN=ANL2; ">
      <seq>ttttttttttttttttggctttcttttcttgttatttttctttcaagagtaaaaattagagaggaagttggagacatttggattcgtccttgtgtctcctctacctctcataatttttctcccaactttttagctcaaaaaagatacagtgaatctgtcaaatatacaaaaaaaaaaaagtttagttctttttgagtttctcttgctttatttcatgaattttggggggtttcttgataataattctggtggtggcggtgcaagaattgttgctgatataccatttaatcacaacaacagcagcagcaacaacgacaataaaaacaatatgcccactggtgcaatttctcagccaagacttcttcctcaatctcttgccaagaacatgttcaactccccaggactttctcttgctcttcaaacaggtatggaagggcaaagtgaggtaacaagaatggctgaaaactacgagggaaataacagtgttggtagaaggagtagagaagaagaaccagacagcagatctggaagtgataacttggaaggtgcatcgggtgatgaacaagatgctaccgacaaaccaccaaggaagaaaagataccaccgacacactcctcagcaaatccaagaacttgaatctcttttcaaggagtgtcctcatcctgatgagaaacaaaggttggagttaagcaaaaggctttctttggagactagacaagtcaagttttggttccaaaatcgtagaactcagatgaagactcaactggaacgccatgagaattcgatactaaggcaagagaatgataagcttcgtgcagaaaacatgtctataagagaggcaatgagaaatccaatttgtactaattgtggtggtccagcaatgattggtgagatctctcttgaggagcaacatcttaggattgaaaatgctaggctgaaagatgaattagatcgagtttgtgcacttgctggcaagtttttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="-" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="90199" stop="88352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89903" g_stop="89485" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89484" i_stop="89408" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89407" g_stop="89187" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="639" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89186" i_stop="89090" i_length="97">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89089" g_stop="88972" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="757" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88971" i_stop="88879" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88878" g_stop="88652" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="984" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="-" ref_id="SGN-U575143" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>985</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89903" e_stop="89485"/>
          <exon e_start="89407" e_stop="89187"/>
          <exon e_start="89089" e_stop="88972"/>
          <exon e_start="88878" e_stop="88652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTTTTTTTTTTTTGGCTTTCTTTTCTTGTTATTTTTCTTTCAAGAGTAAAAATTAGAGAGGAAGTTGGAGACATTTGGATTCGTCCTTGTGTCTCCTCTACCTCTCATAATTTTTCTCCCAACTTTTTAGCTCAAAAAAGATACAGTGAATCTGTCAAATATACAAAAAAAGAAAAAGTTTAGTTCTTTTTGAGTTTCTCTTGCTTTATTTCATGAATTTTGGGGGTTTTCTTGATAATAATTCTGGTGGTGGCGGTGCAAGAATTGTTGCTGATATACCATTTAATCACAACAACAGCAGCAGCAACAACGACAATAAAAACAATATGCCCACTGGTGCAATTTCTCAGCCAAGACTTCTTCCTCAATCTCTTGCCAAGAACATGTTCAACTCCCCAGGACTTTCTCTTGCTCTTGTAAGCCAAATGAAAAAGAGCATAAAAATTGAATCTTTTTTACTTTTATATGACACCCTTTTTTTTTTTTGTTGCAGCAAACAGGTATGGAAGGGCAAAGTGAGGTAACAAGAATGGCTGAAAACTACGAGGGAAATAACAGTGTTGGTAGAAGGAGTAGAGAAGAAGAACCAGACAGCAGATCTGGAAGTGATAACTTGGAAGGTGCATCGGGTGATGAACAAGATGCTACCGACAAACCACCAAGGAAGAAAAGATACCACCGACACACTCCTCAGCAAATCCAAGAACTTGAATCGTAATCATTACCTTCTTTTTCAAATGAAAAAAAAATGATTTTTTTTTCTTTCAACTTTTCTTATGAGATGTTTCTATTATGGTTTTTTTTTTCTTAGTCTTTTCAAGGAGTGTCCTCATCCTGATGAGAAACAAAGGTTGGAGTTAAGCAAAAGGCTTTCTTTGGAGACTAGACAAGTCAAGTTTTGGTTCCAAAATCGTAGAACTCAGATGAAGGTAATAAAAAAAAGATTCAATTTCTATGGCTTTAAAAGATTCTTTTTTTTTGTGGGTTTCTGCTTCTGAATAATGAATCTTTGATTGCACCAGACTCAACTGGAACGCCATGAGAATTCGATACTAAGGCAAGAGAATGATAAGCTTCGTGCAGAAAACATGTCTATAAGAGAGGCAATGAGAAATCCAATTTGTACTAATTGTGGTGGTCCAGCAATGATTGGTGAGATCTCTCTTGAGGAGCAACATCTTAGGATTGAAAATGCTAGGCTGAAAGATGAATTAGATCGAGTTTGTGCACTTGCTGGCAAGTTTTTGGG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTGGCTTTCTTTTCTTGTTATTTTTCTTTCAAGAGTAAAAATTAGAGAGGAAGTTGGAGACATTTGGATTCGTCCTTGTGTCTCCTCTACCTCTCATAATTTTTCTCCCAACTTTTTAGCTCAAAAAAGATACAGTGAATCTGTCAAATATACAAAAAAA-AAAAAGTTTAGTTCTTTTTGAGTTTCTCTTGCTTTATTTCATGAATTTTGGGGGGTTTCTTGATAATAATTCTGGTGGTGGCGGTGCAAGAATTGTTGCTGATATACCATTTAATCACAACAACAGCAGCAGCAACAACGACAATAAAAACAATATGCCCACTGGTGCAATTTCTCAGCCAAGACTTCTTCCTCAATCTCTTGCCAAGAACATGTTCAACTCCCCAGGACTTTCTCTTGCTCTT.............................................................................CAAACAGGTATGGAAGGGCAAAGTGAGGTAACAAGAATGGCTGAAAACTACGAGGGAAATAACAGTGTTGGTAGAAGGAGTAGAGAAGAAGAACCAGACAGCAGATCTGGAAGTGATAACTTGGAAGGTGCATCGGGTGATGAACAAGATGCTACCGACAAACCACCAAGGAAGAAAAGATACCACCGACACACTCCTCAGCAAATCCAAGAACTTGAATC.................................................................................................TCTTTTCAAGGAGTGTCCTCATCCTGATGAGAAACAAAGGTTGGAGTTAAGCAAAAGGCTTTCTTTGGAGACTAGACAAGTCAAGTTTTGGTTCCAAAATCGTAGAACTCAGATGAAG.............................................................................................ACTCAACTGGAACGCCATGAGAATTCGATACTAAGGCAAGAGAATGATAAGCTTCGTGCAGAAAACATGTCTATAAGAGAGGCAATGAGAAATCCAATTTGTACTAATTGTGGTGGTCCAGCAATGATTGGTGAGATCTCTCTTGAGGAGCAACATCTTAGGATTGAAAATGCTAGGCTGAAAGATGAATTAGATCGAGTTTGTGCACTTGCTGGCAAGTTTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584972" ref_strand="+" ref_description="SGN-U584972 Tomato 200607#2 [5 ESTs aligned] ">
      <seq>gaaagagtcaaccaaacctttttctgtgctgttttggctgtatgtatatgtaaggcttcgatgagtccacaattttgcgtattatcttcacctttttttttttggtttttagtattatttttttctactgttgttacccctttttctatctctcgtctcttctattgtctttgcaaaactgattaaacaaagcctttttagcttctttttctctcacttccttttctgtgctttattttttatttttttggtttacaaaagtcaagcatgcagagatacatacatataacagaacagaaaaatgccctctaacttagggttttgcttgcttaaaccattcttttaagtatctatgcttttgtatttgcagttaatgattagtttaagaaaggtcccttttttttttttactggtttgttaggagggagagaagagaaattttaattagtactgttatttaaggaaagtatagagaagagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="-" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="90706" stop="89626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90406" g_stop="89926" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="-" ref_id="SGN-U584972" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90406" e_stop="89926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGTCAACCAAACCTTTTTCTGTGCTGTTTTGGCTGTATGTATATGTAAGGCTTCGATGAGTCCACAATTTTGCGTATTATCTTCACCTTTTTTTTTTTGGTTTTTAGTATTATTTTTTTCTACTGTTGTTACCCCTTTTTCTATCTCTCGTCTCTTCTATTGTCTTTGCAAAACTGATTAAACAAAGCCTTTTTAGCTTCTTTTTCTCTCACTTCCTTTTCTGTGCTTTATTTTTTATTTTTTTGGTTTACAAAAGTCAAGCATGCAGAGATACATACATATAACAGAACAGAAAAATGCCCTCTAACTTAGGGTTTTGCTTGCTTAAACCATTCTTTTAAGTATCTATGCTTTTGTATTTGCAGTTAATGATTAGTTTAAGAAAGGTCCCTTTTTTTTTTTTACTGTTTTGTTAGGAGGGAGAGAAGAGAAATTTTAATTAGTACTGTTATTTAAGGAAAGTATAGAGAAGAGAA</genome_strand>
        <mrna_strand>GAAAGAGTCAACCAAACCTTTTTCTGTGCTGTTTTGGCTGTATGTATATGTAAGGCTTCGATGAGTCCACAATTTTGCGTATTATCTTCACCTTTTTTTTTTTGGTTTTTAGTATTATTTTTTTCTACTGTTGTTACCCCTTTTTCTATCTCTCGTCTCTTCTATTGTCTTTGCAAAACTGATTAAACAAAGCCTTTTTAGCTTCTTTTTCTCTCACTTCCTTTTCTGTGCTTTATTTTTTATTTTTTTGGTTTACAAAAGTCAAGCATGCAGAGATACATACATATAACAGAACAGAAAAATGCCCTCTAACTTAGGGTTTTGCTTGCTTAAACCATTCTTTTAAGTATCTATGCTTTTGTATTTGCAGTTAATGATTAGTTTAAGAAAGGTCCCTTTTTTTTTTTTACTGGTTTGTTAGGAGGGAGAGAAGAGAAATTTTAATTAGTACTGTTATTTAAGGAAAGTATAGAGAAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570639" ref_strand="+" ref_description="SGN-U570639 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157349234|emb|CAO24380.1| (e_value=0) unnamed; (*ATH) AT4G00740.1 (e_value=0)  Symbol: None | dehydration-responsive protein-related, similar to early-responsive to dehydration stress ERD3 protein (Arabidopsis thaliana) GI:15320410; contains Pfam profile PF03141: Putative methyltransferase | chr4:307431-310482 REVERSE | Aliase... ; ">
      <seq>gggggtggctagttttggtggctatctactttctgaagagattttgacactctcttttgctccaagagattcacataaatcacaaatacagtttgccttggaacgaggaatacctgcatttgttgccatgcttgggacacgcaggcttccgtttcctgccttctcgtttgatttggttcattgttcacggtgtttgattccttttactgcgtataatgcttcatacttcattgaagttgaccggttactccgtcctggaggccaccttgtcatttctggtcctcccgttcagtggcccaagcaagataaggagtgggcggatctccaaacagtggccagatcgttgtgctatgagctgattgttgtagatggaaacactgccatttggaaaaagcctcaaggggattcatgtgttcctattcaaaatgaatttgggcttgagctgtgtgatgaatcagtagatccaagtgctgcatggtacttcaagttgaaaaaatgtgtgactaggacttcatcttccaaaggagaatttgccattgggaaaattccaaaatggccagcgaggctgatgaaagctccttcgagggcaattgtaactaaaaatggagtggatgtgtttgaagctgactcaagaagatgggcgcggagagtcgcacattataagagttcattgaacttgaaactaggaacttcatcagttcgtaatgtcatggacatgaatgcattttttggaggatttgctgcagcattatcatcagacccaatctgggtgatgaatgttgttccagcacaaaagcctttaacacttgatgtcatttatgacagaggccttattggagtttaccacgactggtgtgagcctttctcaacatatcctcggacttatgatctgattcacgtgggagccatagaatctctcataaaggatcccgtttccggcaagatcaggtgcagccttgtcgatttgatggtggaaattgatagaattcttcggcctgaaggaactgttataattcgggactctcctgaagtgatagacaaagtagagcgtattgctcctgctgtaagatggacggcaagtattcatgagaaagaacctgaatcacatggaagggagaaaatcttggtagccacgaagaatttttggaagctaccttcttcatcctactgattgatcctttggtttttgtaatgtaggtatatcctttttgtctcattattaagtcccaataacttgtttcaaatgatgcatctattctacttctttcttgtctcttcaattagcttatgtagaattaaatggaagtgtacaaggatgagggaaactgtaaattctttttttatagtatcactgctacaaactctcctaacttctttggtattagaaaatgaccagccaggtggcttcttgttcaccagagttggcaaaagttgcatggtatgaagtggcaataactagttgctgcatcatatttatactatatttggagggcaatgacattggcttctcatttcttgcttgactatgttcagtcctttcatttccctatttcttttgtttcttttacatcatatatggacacctctgtgtgcatagcagctttgttttacttgcatatgtattacatctcgaaaaatttgaatgtttataagtagtcattttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="-" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="103970" stop="98261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103756" g_stop="103753" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103752" i_stop="103670" i_length="83">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103669" g_stop="103459" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="215" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103458" i_stop="103377" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103376" g_stop="103115" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="477" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103114" i_stop="102936" i_length="179">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102935" g_stop="102561" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="852" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102560" i_stop="102198" i_length="363">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102197" g_stop="102102" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="853" r_stop="948" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102101" i_stop="99278" i_length="2824">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99277" g_stop="98561" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="949" r_stop="1665" r_length="717" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="-" ref_id="SGN-U570639" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U570639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103756" e_stop="103753"/>
          <exon e_start="103669" e_stop="103459"/>
          <exon e_start="103376" e_stop="103115"/>
          <exon e_start="102935" e_stop="102561"/>
          <exon e_start="102197" e_stop="102102"/>
          <exon e_start="99277" e_stop="98561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTGCGTTGTTTTTGCTCATTTCCTTTGAATCTTCAGTAATGTTCTTCGAAATCTGTGACCGTAATAATTTGTTCCTGCTGCAGGTGGCTAGTTTTGGTGGCTATCTACTTTCTGAAGAGATTTTGACACTCTCTTTTGCTCCAAGAGATTCACATAAATCACAAATACAGTTTGCCTTGGAACGAGGAATACCTGCATTTGTTGCCATGCTTGGGACACGCAGGCTTCCGTTTCCTGCCTTCTCGTTTGATTTGGTTCATTGTTCACGGTGTTTGATTCCTTTTACTGCGTATAGTGAGTTCTCTGAGTTCCATGGTCATTGTCAAGGTGCTTTATATCTTGTCTGAAAACCCTGACAGAAGAGTTTGCCATGCAGATGCTTCATACTTCATTGAAGTTGACCGGTTACTCCGTCCTGGAGGCCACCTTGTCATTTCTGGTCCTCCCGTTCAGTGGCCCAAGCAAGATAAGGAGTGGGCGGATCTCCAAACAGTGGCCAGATCGTTGTGCTATGAGCTGATTGTTGTAGATGGAAACACTGCCATTTGGAAAAAGCCTCAAGGGGATTCATGTGTTCCTATTCAAAATGAATTTGGGCTTGAGCTGTGTGATGAATCAGTAGATCCAAGTGCTGCATGGTGATTCTTTTTCATGATTTCTCTAATTGTTATTTTTTTACTTCTCTCCTTTCATAGTCTTCAGTTACATCTTTCTGCGACCTCCATCAATTTTTTGGTGCATTCGCCTTGATAAACATATTGTTGTTTGGAAGCTTTATAAATAACTATCTCTATTTTCTGTCTCAAATGAATTGCAGGTACTTCAAGTTGAAAAAATGTGTGACTAGGACTTCATCTTCCAAAGGAGAATTTGCCATTGGGAAAATTCCAAAATGGCCAGCGAGGCTGATGAAAGCTCCTTCGAGGGCAATTGTAACTAAAAATGGAGTGGATGTGTTTGAAGCTGACTCAAGAAGATGGGCGCGGAGAGTCGCACATTATAAGAGTTCATTGAACTTGAAACTAGGAACTTCATCAGTTCGTAATGTCATGGACATGAATGCATTTTTTGGAGGATTTGCTGCAGCATTATCATCAGACCCAATCTGGGTGATGAATGTTGTTCCAGCACAAAAGCCTTTAACACTTGATGTCATTTATGACAGAGGCCTTATTGGAGTTTACCACGACTGGTGAGTCAAGAGTTTTTCTATCTCATATTTGATAGTCATTCTTAGAAGTATATGGTTGACTGGATTCTGGTTCATTATCCCTTTTCCTAAGGAAAAAAATCTAAATCCTTTCTGCTAGACAGCGAGTTTTATGATACAAATTCTCTTTCTTTATTCTTTATGTCTGTGAAGTTCTTTCCTTATTCAAAGACTCACCCCTAGTGGTTTATTTATCCGAAAACTTACAGAGCCATGGAAAAATAAAACCTCCACATGATAAGTGCTGACATTAGCTTCTTGCCTCGTGTTATTCTTTCCCCAAAGGAAGTGGATAGATGGTTATTTACTTCAATTAATGAACTTGATTTACCACTCGTGTCACAGGTGTGAGCCTTTCTCAACATATCCTCGGACTTATGATCTGATTCACGTGGGAGCCATAGAATCTCTCATAAAGGATCCCGTTTCCGGCAAGATCAGGTATGTCTAATCTTCTGGATTTTTCTCTACTCTTTATTTTTTATTATCTGTAATTAGATATTATTTCCAATTGAATATGAAAGTTCTCACCTATTTCTAAGAAGGCAGCTTATCTATTAATACAATGTAAAACTATATTGCATATTAATAGTTGATGAGAGAAATGATATCTTGTATGATATTTCAGTTATTTGAGCATTTAAGAGATTCAAAAACTATATTAATCCAAACAGTTATTTCAACATGTTTTTCACAAATACTAGTATAGCTGAACTATTGATTTGATTTCATTGCAAATGACTTGTATCAGTATTTTTGGGTTATATGTGAAATTAATCTTATCTAGAAACTCTAAATATGTACAATACCTTGGGGATAGTAATTAAAATCTAAATAAAATCATCATATGGTTAGAATGTGATCTCTTTGTCTTGAACAAGAGGTAGTGTACAGTCTATTGGAATCATTGAGACTATGAGAAGTTCTCTCAAAAGGCATAATCAGATCCAGCCCAAAATAAAGCAAAAGTAGAAAATTTATATAGGTGAAGGTGATACCAATTAGTTGGGATTATTAAGTTTGTCTGTTATTAAGTCTACTTTATTAATTTTGATGTTTTAGTAGAAAACACATAAAATTTCTAGTTTTATTTGATTTTTATTTAATTTTGTATAATATTGGACTAAGATGAGCTTAAATGGAGTAATATGTCTGTGAGAATGCGTATAGCCGATCTCAGCCACTTGGGATTGAATTCTAGTTATTTTATGAGTAGAATACCGTTATGTTTATTTATTTATTTATTTTGATAATGGTTGTGTCATGGCTATTTCATGTGCATCTTGACAAATTCAGGGGGTACCTGCTACTTCTCTCTGACATAGTGACCATTTAACTGTCTAACTAGGCTTAGGCATACGAGAAGAAATAATCTTTTTTGCCTCTGTTGAGATTGAAACGACCCCAGTCCGTTGGAAGTATACCATTATACTATACGGGCAGGATGCAGAAACACACACACACATCCATATAATGTACATCTTTAAGTAGTTAATAAACTAAATAAAGTTTTCTAAGAATCATTGACAAAAGTGGTCCTCACTTGGTTCCAAAAAATATTTGATGCAATAGTTGTTCTTTTCTTTTGGTCTATAGAGTGTCTCATGCCCCAAACCTATTTTTAAGCTTTGTACTTATTTTGTGGCCTATATAAAAAACCTTGAATCCTTGTGTGAAATCATTTTGGAATACCAATAAAAAAAAATGTAAAATCATTTTGGAATTGAGTAAAATTTTTATATAAAGCTATGTGCATTAATTTACTTTTTTCAGAGAGCTTGTTTCCTCTCATGAAGTAAGTGGGTGATACATGAGAATCGCCAACCAAGATATCCTCTTTTCCGGCTATCATATAACAATGGGGTCCCTGACCTTGCCAACATTGGCACATCCTCAACGTTTAGGCATCAATACATGGGAATAGCCTACTTTGAGAACTAGAGGTCTTTGAGAAAGACGATATAGTCGATCTCTTGATCTCCTTGTGAAATTTCCCAGATGTTATGGAATTTTGAAGATGTCTCCGGAGAAAATATGTAGCCCCTTTATTTTATACATGCATGGATTAGGGTTTTGGGGTAACCTCCAATTAATCTGGTTTTACTAACCCAAAATGTCCATGGCAGCATCTTTTAGGCTATCATGTCATTGTGGTTTCCTGAACTCGTCAACATTGCCCCCACCCCCGATGGTTAGACATCAATTTTTTTATTATAGAACATCAGTAAATCTTGAGGACTTGAATACCAATATGCTGTGATTGTACTTTCTGTTGCAACTTCTGGGTTGAGATTTTGGAAACGAATTGCTCCATTGAATCATTTGCATGTAGACATTGAATGAAGCATGATAGTTATTTGTGTACACATTGAATTTCATCTTCTAGCGTTATTGGATCAGTATTTGACATAAAGTTCTGCAACCATTCATCTTGTATCTGGTTTCAGTGAGGAATAATGCTATTACTATTTGCTGAGATTTTGGGAAATAACCATCATTAGAATTCACCTTATATATAATAAGCTAACTATCCACCATGTCTGACACCAACCAGTGGATGTTGTGTTGTAACCTCCCTTGTAAACCTATCAGCCAAAAACTTGTGGTTTCTTTGAACAAATTTCAAGTCAAGAGCAGAGCACTTTTTCTAGTGGAATATAGACTCTATTTTCTTTTTCTAGAGATGAATTTCTTCTCTGATGATATTTTTTTATTTTTCAAACAACCTTAATAAAGTTAGGTGAACAGTATAATCACAAGTACACTCGTGATCTGAATTTTGTTAGCAGTATATTTCTTCGTTGATTAATTATCAAGGTTAAACATTAATGCATCATTTTTCTCCTCCCTAGACATAACTGTTGTATCTCCTAGCCTCTTAAGGTATAATTGATATGCATGGAGATGATGAAGTAAACTTAATACCTTGTTAGTTTTTGAAAAGGTTAAATAAAATTGTATTCTTATTCCCTAAGGGTCATTCAGCATGCAAGAAGTTAGTAATAAGAGAAGGGGTTTGAAATTTAAAAACTGTAATTGGCCATGCTTTTCTCTGTAATTGATGTTAGACTTGTTTATAGGGAATAATTCTTTCCCAGCCCTCTTACTCTTGAGATAGACAAAGAACTGGAATTATACCAAAAAAAGAGATGTAAGGCTGTGCTAGGTTTTATTGACGGGCATGTATGATGCCCCAAATTTAGTGCAAGTGTGGAACCAAGCCCGTTAGCTGCAAAGTGATTGAACCATTTATACATTCTTCCAGGTGCAGCCTTGTCGATTTGATGGTGGAAATTGATAGAATTCTTCGGCCTGAAGGAACTGTTATAATTCGGGACTCTCCTGAAGTGATAGACAAAGTAGAGCGTATTGCTCCTGCTGTAAGATGGACGGCAAGTATTCATGAGAAAGAACCTGAATCACATGGAAGGGAGAAAATCTTGGTAGCCACGAAGAATTTTTGGAAGCTACCTTCTTCATCCTACTGATTGATCCTTTGGTTTTTGTAATGTAGGTATATCCTTTTTGTCTCATTATTAAGTCCCAATAACTTGTTTCAAATGATGCATCTATTCTACTTCTTTCTTGTCTCTTCAATTAGCTTATGTAGAATTAAATGGAAGTGTACAAGGATGAGGGAAACTGTAAATTCTTTTTTTATAGTATCACTGCTACAAACTCTCCTAACTTCTTTGGTATTAGAAAATGACCAGCCAGGTGGCTTCTTGTTCACCAGAGTTGGCAAAAGTTGCATGGTATGAAGTGGCAATAACTAGTTGCTGCATCATATTTATACTATATTTGGAGGGCAATGACATTGGCTTCTCATTTCTTGCTTGACTATGTTCAGTCCTTTCATTTCCCTATTTCTTTTGTTTCTTTTACATCATATATGGACACCTCTGTGTGCATAGCAGCTTTGTTTTACTTGCATATGTATTACATCTCGAAAAATTTGAATGTTTATAAGTAGTCATTTTAG</genome_strand>
        <mrna_strand>GGGG...................................................................................GTGGCTAGTTTTGGTGGCTATCTACTTTCTGAAGAGATTTTGACACTCTCTTTTGCTCCAAGAGATTCACATAAATCACAAATACAGTTTGCCTTGGAACGAGGAATACCTGCATTTGTTGCCATGCTTGGGACACGCAGGCTTCCGTTTCCTGCCTTCTCGTTTGATTTGGTTCATTGTTCACGGTGTTTGATTCCTTTTACTGCGTATA..................................................................................ATGCTTCATACTTCATTGAAGTTGACCGGTTACTCCGTCCTGGAGGCCACCTTGTCATTTCTGGTCCTCCCGTTCAGTGGCCCAAGCAAGATAAGGAGTGGGCGGATCTCCAAACAGTGGCCAGATCGTTGTGCTATGAGCTGATTGTTGTAGATGGAAACACTGCCATTTGGAAAAAGCCTCAAGGGGATTCATGTGTTCCTATTCAAAATGAATTTGGGCTTGAGCTGTGTGATGAATCAGTAGATCCAAGTGCTGCATG...................................................................................................................................................................................GTACTTCAAGTTGAAAAAATGTGTGACTAGGACTTCATCTTCCAAAGGAGAATTTGCCATTGGGAAAATTCCAAAATGGCCAGCGAGGCTGATGAAAGCTCCTTCGAGGGCAATTGTAACTAAAAATGGAGTGGATGTGTTTGAAGCTGACTCAAGAAGATGGGCGCGGAGAGTCGCACATTATAAGAGTTCATTGAACTTGAAACTAGGAACTTCATCAGTTCGTAATGTCATGGACATGAATGCATTTTTTGGAGGATTTGCTGCAGCATTATCATCAGACCCAATCTGGGTGATGAATGTTGTTCCAGCACAAAAGCCTTTAACACTTGATGTCATTTATGACAGAGGCCTTATTGGAGTTTACCACGACTG...........................................................................................................................................................................................................................................................................................................................................................................GTGTGAGCCTTTCTCAACATATCCTCGGACTTATGATCTGATTCACGTGGGAGCCATAGAATCTCTCATAAAGGATCCCGTTTCCGGCAAGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGCCTTGTCGATTTGATGGTGGAAATTGATAGAATTCTTCGGCCTGAAGGAACTGTTATAATTCGGGACTCTCCTGAAGTGATAGACAAAGTAGAGCGTATTGCTCCTGCTGTAAGATGGACGGCAAGTATTCATGAGAAAGAACCTGAATCACATGGAAGGGAGAAAATCTTGGTAGCCACGAAGAATTTTTGGAAGCTACCTTCTTCATCCTACTGATTGATCCTTTGGTTTTTGTAATGTAGGTATATCCTTTTTGTCTCATTATTAAGTCCCAATAACTTGTTTCAAATGATGCATCTATTCTACTTCTTTCTTGTCTCTTCAATTAGCTTATGTAGAATTAAATGGAAGTGTACAAGGATGAGGGAAACTGTAAATTCTTTTTTTATAGTATCACTGCTACAAACTCTCCTAACTTCTTTGGTATTAGAAAATGACCAGCCAGGTGGCTTCTTGTTCACCAGAGTTGGCAAAAGTTGCATGGTATGAAGTGGCAATAACTAGTTGCTGCATCATATTTATACTATATTTGGAGGGCAATGACATTGGCTTCTCATTTCTTGCTTGACTATGTTCAGTCCTTTCATTTCCCTATTTCTTTTGTTTCTTTTACATCATATATGGACACCTCTGTGTGCATAGCAGCTTTGTTTTACTTGCATATGTATTACATCTCGAAAAATTTGAATGTTTATAAGTAGTCATTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565371" ref_strand="+" ref_description="SGN-U565371 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157349234|emb|CAO24380.1| (e_value=6e-75) unnamed; (*ATH) AT4G00740.1 (e_value=4e-77)  Symbol: None | dehydration-responsive protein-related, similar to early-responsive to dehydration stress ERD3 protein (Arabidopsis thaliana) GI:15320410; contains Pfam profile PF03141: Putative methyltransferase | chr4:307431-310482 REVERSE | Aliase... ; ">
      <seq>cctcttttaaatccctttttaagttttaaatcaccaaaatgtatgaatgtaaagaataacaaatactaaaaattaaagactaaaaatatcctgcaagtttctttaagccacactcacttgaaaaagcaagtacttggtacatatgcttcagatcttcaaatccttatcttccacacttaaatttctgtaaatatacatatctatatgtgtgttattggatcttgaagttgtatttttaactgctactgctcaaaatactgaaaatgggtcacttaaatctaccatcatcgaagcgaaatgttcgacaatggcgacttcttgatttggtttcagcagctttctttgcagcagtcttgattttcttccttcttctctgtactcctttgggtgattctttggctgcttcaggccgccagactcttctccgttctgcctctggggatccgcgccagcgtagtcgcctaattgctcaggtggaatcagggagacacaacacagccattgatgcatgctcagcggactatgtggattatatgccttgtgaagatccgagaatcaatagccaattgagtagagagatgaatttttatagggaaagacattgtccattgcctaaagatacacctctttgtttgattccaccgacacaaggttaccgcgttcctgttcagtggcctgagagtttgcacaagatttggcatgagaatatgccatataataaaatagctgacaggaaaggacaccaaggatggatgaaaaaggaagggccatattttatctttcctggtggtggaactatgtttcctgacggagctgancagtatatcgagaaacttaaacagtatattncnatagctggtggngttttgaggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="-" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="106146" stop="103474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105846" g_stop="105374" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105373" i_stop="105296" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105295" g_stop="105077" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="692" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105076" i_stop="103957" i_length="1120">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.462" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103956" g_stop="103774" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="875" r_length="183" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="-" ref_id="SGN-U565371" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105846" e_stop="105374"/>
          <exon e_start="105295" e_stop="105077"/>
          <exon e_start="103956" e_stop="103774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTTTAAATCCCTTTTTAAGTTTTAAATCACCAAAATGTATGAATGTAAAGAATAACAAATACTAAAAATTAAAGACTAAAAATATCCTGCAAGTTTCTTTAAGCCACACTCACTTGAAAAAGCAAGTACTTGGTACATATGCTTCAGATCTTCAAATCCTTATCTTCCACACTTAAATTTCTGTAAATATACATATCTATATGTGTGTTATTGGATCTTGAAGTTGTATTTTTAACTGCTACTGCTCAAAATACTGAAAATGGGTCACTTAAATCTACCATCATCGAAGCGAAATGTTCGACAATGGCGACTTCTTGATTTGGTTTCAGCAGCTTTCTTTGCAGCAGTCTTGATTTTCTTCCTTCTTCTCTGTACTCCTTTGGGTGATTCTTTGGCTGCTTCAGGCCGCCAGACTCTTCTCCGTTCTGCCTCTGGGGATCCGCGCCAGCGTAGTCGCCTAATTGCTCAGGTAAAAATTACTCTATTTAATACTCAGTTTCTGTTCGATCTGTATTTTTTTTTTAATGACATGGTACTTTTGGAATAGGTGGAATCAGGGAGACACAACACAGCCATTGATGCATGCTCAGCGGACTATGTGGATTATATGCCTTGTGAAGATCCGAGAATCAATAGCCAATTGAGTAGAGAGATGAATTTTTATAGGGAAAGACATTGTCCATTGCCTAAAGATACACCTCTTTGTTTGATTCCACCGACACAAGGTTACCGCGTTCCTGTTCAGTGGCCTGAGAGTTTGCACAAGGTAATGCATTTAAAAAAATCGTTCTGATCTCATAGGTTTACTTTTGGTGCTCAAAAGGGCGAATCTTTGGTTAGTTGTTATTGATCTGAAGCTAATACCCTGCAGCCCAGAAGTTTGTGCTGAAACGTGTTGAAGAAACACTTTTATTTACTTACTTTAGGTTTCAAGATGCAGCTTTCCTAGTGAGTCTAAATGTTTTCTTTAGCATAGCACGTGGAAATACTTTGTTTGATGGATGGCAGTGAGGATGGGGCTCACGAATTCTGCATGTTCTCAGATCATGGTGAAATGTGTGAATGCCCTTACAAGTTTTAAGCTGTTAGGGGAGATAGTTTTGCTTATGTTAGGTTGTAACAGATTGAGTGATTTTTGAATTCATAAGTTCCCTCAGTTTGGTTGATTTTTGATGTAGGTGAGCTGGAGTTAGCCACCTAGAACAATGTTTAAGTTGCCTCTAGATGTATTCCCATATGCAGCTTATGTATGATCCAGCTTAACACTTGTTGTTTCATTAGATGGATCCCACAATAGTTTTCTTTTAGTCTTCCTTTTTCCTTTTAGATGAATGTGGATAATGGCTTTTCCCTTTTCTTGGGCCTCTTTTGGTGGCAATTCTTAGTAACTCAACCTCTCAATATGCACTCGAAGGATGTGTCTTTGTGGCCAATGAATTTGGTTGAGAAACATGAGGTTTCAAGTTTAAATCCCAGTTGAGACAAAAATACTAGGTGATTTCTTCTTATTTTGTCCTAGTCTTGGTGGATAGAGTTACTTAGTACTTGTTGTTGGTGGGAGGTGATAGGTATCTTGTGGAATTAGTCAAGGTGCGCACAAGCAGGGCTGAACACCACGGTTATCAAATAAAGAAACTCAGCCTCTCAACATATTAAATAATACAGTTCTTATTTTTTTTAAGATTCAGCCTCTCAATATGTGAAATATACAGTTCTTATTTTCTTTTAGATTCTGCTTAAATTCTTGCATTGCATATGTGATTGTGAGCCTCTAGGCTGCATTAATGGAACCCATTCTGTTGAGGGCTGCATTTTTCACTTCTTTTTTCTTCTGGAAGTTTGATGTTCCAGTGCAAGGTCACACTAATCCTTCCCTTTCTTCCTAGATTTGGCATGAGAATATGCCATATAATAAAATAGCTGACAGGAAAGGACACCAAGGATGGATGAAAAAGGAAGGGCCATATTTTATCTTTCCTGGTGGTGGAACTATGTTTCCTGACGGAGCTGAGCAGTATATCGAGAAACTTAAACAGTATATTCCGATAGCTGGTGGTGTTTTGAGGACC</genome_strand>
        <mrna_strand>CCTCTTTTAAATCCCTTTTTAAGTTTTAAATCACCAAAATGTATGAATGTAAAGAATAACAAATACTAAAAATTAAAGACTAAAAATATCCTGCAAGTTTCTTTAAGCCACACTCACTTGAAAAAGCAAGTACTTGGTACATATGCTTCAGATCTTCAAATCCTTATCTTCCACACTTAAATTTCTGTAAATATACATATCTATATGTGTGTTATTGGATCTTGAAGTTGTATTTTTAACTGCTACTGCTCAAAATACTGAAAATGGGTCACTTAAATCTACCATCATCGAAGCGAAATGTTCGACAATGGCGACTTCTTGATTTGGTTTCAGCAGCTTTCTTTGCAGCAGTCTTGATTTTCTTCCTTCTTCTCTGTACTCCTTTGGGTGATTCTTTGGCTGCTTCAGGCCGCCAGACTCTTCTCCGTTCTGCCTCTGGGGATCCGCGCCAGCGTAGTCGCCTAATTGCTCAG..............................................................................GTGGAATCAGGGAGACACAACACAGCCATTGATGCATGCTCAGCGGACTATGTGGATTATATGCCTTGTGAAGATCCGAGAATCAATAGCCAATTGAGTAGAGAGATGAATTTTTATAGGGAAAGACATTGTCCATTGCCTAAAGATACACCTCTTTGTTTGATTCCACCGACACAAGGTTACCGCGTTCCTGTTCAGTGGCCTGAGAGTTTGCACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGCATGAGAATATGCCATATAATAAAATAGCTGACAGGAAAGGACACCAAGGATGGATGAAAAAGGAAGGGCCATATTTTATCTTTCCTGGTGGTGGAACTATGTTTCCTGACGGAGCTGANCAGTATATCGAGAAACTTAAACAGTATATTNCNATAGCTGGTGGNGTTTTGAGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596782" ref_strand="+" ref_description="SGN-U596782 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157349234|emb|CAO24380.1| (e_value=1e-13) unnamed; (*ATH) AT4G00740.1 (e_value=1e-15)  Symbol: None | dehydration-responsive protein-related, similar to early-responsive to dehydration stress ERD3 protein (Arabidopsis thaliana) GI:15320410; contains Pfam profile PF03141: Putative methyltransferase | chr4:307431-310482 REVERSE | Aliase... ; ">
      <seq>aattatgtttgcatagatctccatattcctcttttaaatccctttttaagttttaaatcaccaaaatgtatgaatgtaaagaataacaaatactaaaaaaataaagaataaaaatatcctgcaagccacactcacttgaaaaagcaagtacttggtacatatgcttcagatcttcaaatccttatcttccacacttaaatttctgtaaatatacatatctatatatgtgttattggatcttgaagttgtatttttaactgctactgctcaaaatactgaaaatgggtcacttaaatctaccatcatcgaagcgaaatgttcgacaatggcgacttcttgatttggtttcagcagctttctttgcagcagtcttgattttcttccttcttctctgtactcctttgggtgattctttggctgcttcaggccgccagactcttctccgttctgcctctggggatccgcgccagcgtagtcgcctaattgctcaggtggaatcagggagacacaacacagccattgatgcatgctcagctgactatgtggattatatgccctgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="-" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="106173" stop="104925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105873" g_stop="105374" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105373" i_stop="105296" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105295" g_stop="105225" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="562" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="-" ref_id="SGN-U596782" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U596782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105873" e_stop="105374"/>
          <exon e_start="105295" e_stop="105225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATGCTTGCATAGATCTCCATATTCCTCTTTTAAATCCCTTTTTAAGTTTTAAATCACCAAAATGTATGAATGTAAAGAATAACAAATACT-AAAAATTAAAGACTAAAAATATCCTGCAAGTTTCTTTAAGCCACACTCACTTGAAAAAGCAAGTACTTGGTACATATGCTTCAGATCTTCAAATCCTTATCTTCCACACTTAAATTTCTGTAAATATACATATCTATATGTGTGTTATTGGATCTTGAAGTTGTATTTTTAACTGCTACTGCTCAAAATACTGAAAATGGGTCACTTAAATCTACCATCATCGAAGCGAAATGTTCGACAATGGCGACTTCTTGATTTGGTTTCAGCAGCTTTCTTTGCAGCAGTCTTGATTTTCTTCCTTCTTCTCTGTACTCCTTTGGGTGATTCTTTGGCTGCTTCAGGCCGCCAGACTCTTCTCCGTTCTGCCTCTGGGGATCCGCGCCAGCGTAGTCGCCTAATTGCTCAGGTAAAAATTACTCTATTTAATACTCAGTTTCTGTTCGATCTGTATTTTTTTTTTAATGACATGGTACTTTTGGAATAGGTGGAATCAGGGAGACACAACACAGCCATTGATGCATGCTCAGCGGACTATGTGGATTATATGCCTTGTGA</genome_strand>
        <mrna_strand>AATTATGTTTGCATAGATCTCCATATTCCTCTTTTAAATCCCTTTTTAAGTTTTAAATCACCAAAATGTATGAATGTAAAGAATAACAAATACTAAAAAAATAAAGAATAAAAATATCCTGC-A---------AGCCACACTCACTTGAAAAAGCAAGTACTTGGTACATATGCTTCAGATCTTCAAATCCTTATCTTCCACACTTAAATTTCTGTAAATATACATATCTATATATGTGTTATTGGATCTTGAAGTTGTATTTTTAACTGCTACTGCTCAAAATACTGAAAATGGGTCACTTAAATCTACCATCATCGAAGCGAAATGTTCGACAATGGCGACTTCTTGATTTGGTTTCAGCAGCTTTCTTTGCAGCAGTCTTGATTTTCTTCCTTCTTCTCTGTACTCCTTTGGGTGATTCTTTGGCTGCTTCAGGCCGCCAGACTCTTCTCCGTTCTGCCTCTGGGGATCCGCGCCAGCGTAGTCGCCTAATTGCTCAG..............................................................................GTGGAATCAGGGAGACACAACACAGCCATTGATGCATGCTCAGCTGACTATGTGGATTATATGCCCTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573718" ref_strand="+" ref_description="SGN-U573718 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|157349235|emb|CAO24381.1| (e_value=0) unnamed; (*ATH) AT3G61140.1 (e_value=0)  Symbol: None | COP9 signalosome complex subunit 1 / CSN complex subunit 1 (CSN1) / COP11 protein (COP11) / FUSCA protein (FUS6), FUSCA6, COP11, CSN1; identical to FUS6 GI:432446, SP:P45432 from (Arabidopsis thaliana); contains Pfam profile PF01399: ... ; (*SWP) sp|P45432|CSN1_ARATH (e_value=0) COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana GN=CSN1; ">
      <seq>gccattacgggccgggggtgcaggatctattcaagttttttcttctcagtgtatcgctcccggaagaagtggtaacaagacagagcaaaaaccctagctccgatcaaacattatacaaattaatatccgatggagcctgacgaggatttagggctaatagccgaagagatctacgccaacggcgatgagaacaagcagcgtcatcggccgattatcagcggcgagcagctcgatattgaggcgtacgccgccttgtacagtggccggacaaaaatcatgaggcttctcttcatagccgatcgatgtggcaatgcttcaatgcaattggaggctttgagaatggcctatgatgagattaagaaaggggaaaacacacaattgttccgtgaggttgtgcagaaaatcgatggacgtttgggcactaattatgggccagaccctgcttgggctgactctgtggatcgccgggctgatctgaggaaggagaagcttgagagcgaactcaacgcttataggacaaatctgatcaaagagagcattaggatgggatacaatgattttggggatttctactatgcacatggacagcttggagaggcatttaagaattatgttcgtacacgtgattattgcacgactgcgaaacacataatccatatgtgtttgaatgcgattctggtcagcattgagatgggccagttcacacatgttacaagctacgtcagtaaggcggagcaaagccaagatgctctagatgctattacagttgcaaaacttcgttgtgctgctgggttggctcacttagaggcaaagaaatataagcttgctgctcgaaagttcctggaagttggtccagaattaggtaacaactacactgaagttattgcaccccaagatgttgctacttatggtggactctgtgcgcttgcaagttttgaccgagcagaactgaagagcaaagttattgacaatataaacttcagaaatttcttagagctggtacccgagataagggagctcattcatgatttctatacaagtcactatgcttcttgtctggagtatctagggaatcttaaagcaaatctgttgctcgacatccatttgcatgatcatgtcgagacactgtatgatcaaatccgtagcaaagctttgatacagtatacccacccatttgtctcggttgatttgaatatgatggctaatgctttcaagacgagtgttgccgggttggaaaaggaacttgaatctttgatcactgacaaccaaattcaggctcgaattgactcacacaacaaaattttgtatgcacgacatgctgatcagagaaatgcaaccttccagaaggtgctgcagacaggcaaggaattcgatcgggatgtgagatcaatgcttttgagagcaaaccttctcaagcatgactacattgctagaacgtcaagaaaacattgaaacggaggaggatggtagcacacagttttgttttccttgattgcgaggttacgtatgctgcatgaagttgaccagacaattgtctacagaagttggttgagtcttggaaagccatgtcttttgggggctcgagaaattttcctggataatagaggggactgctgttcatatttatagatttaccagttgctggaaaagtaaatattttttgcctggtcctacttgctgcaacctttctctgtgatgtgtcatcaacgaatgctaatccatttagtaccttgtttttttgttcattcaagatgaaagattccatgtagcctatattgttgatgcttatacgtattcattaatggtcattagtctttgagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="-" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="112495" stop="106894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112195" g_stop="111697" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="516" r_length="499" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111696" i_stop="109796" i_length="1901">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109795" g_stop="109475" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="837" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109474" i_stop="108958" i_length="517">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108957" g_stop="108841" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="954" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108840" i_stop="108741" i_length="100">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108740" g_stop="108655" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="955" r_stop="1040" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108654" i_stop="108081" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108080" g_stop="107846" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1041" r_stop="1275" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107845" i_stop="107742" i_length="104">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107741" g_stop="107194" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1276" r_stop="1823" r_length="548" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="-" ref_id="SGN-U573718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1806</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112195" e_stop="111697"/>
          <exon e_start="109795" e_stop="109475"/>
          <exon e_start="108957" e_stop="108841"/>
          <exon e_start="108740" e_stop="108655"/>
          <exon e_start="108080" e_stop="107846"/>
          <exon e_start="107741" e_stop="107194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAGGATCTATTCAAGTTTTTTCTTCTCAGTGTATCGCTCCCGGAAGAAGTGGTAACAAGACAGAGCAAAAACCCTAGCTCCGATCAAACATTATACAAATTAATATCCGATGGAGCCTGACGAGGATTTAGGGCTAATAGCCGAAGAGATCTACGCCAACGGCGATGAGAACAAGCAGCGTCATCGGCCGATTATCAGCGGCGAGCAGCTCGATATTGAGGCGTACGCCGCCTTGTACAGTGGCCGGACAAAAATCATGAGGCTTCTCTTCATAGCCGATCGATGTGGCAATGCTTCAATGCAATTGGAGGCTTTGAGAATGGCCTATGATGAGATTAAGAAAGGGGAAAACACACAATTGTTCCGTGAGGTTGTGCAGAAAATCGATGGACGTTTGGGCACTAATTATGGGCCAGACCCTGCTTGGGCTGACTCTGTGGATCGCCGGGCTGATCTGAGGAAGGAGAAGCTTGAGAGCGAACTCAACGCTTATAGGGTATCTTTCTTCGAAGAAAACTTTTGTTCTGTTTAAATCTCCATTGCTTTCATTGACACCATTCACTGTCTACTTAATGTTTAGTAAATTAGCTTGTTATTCCCTTCGTCACAATTGTTTCCTGCTCTTTTCACGTATAAGAGTCAATTTGGATAACTCTGGAAGCTAAATATGATTAGATTAATTTTTATTTTTTATATCAAAATCTCAATAATCAGAAACTACATGATATAATTATAAATTAATAAGTTGAAACTACATGATATAATTATAAATTAATAAGTTGCTGTTCATATTTAAATAGTAAAAACATTCAGCTTATATTATGGATAATTAGGAAAGGGGTTGCGAGGGAACTAGTATGGTTGTGGCTAATATGTGTGTTGAATTTTTTTCTGAGTTCTTGATCAAGGTAAATTTATGGTTTTGTCTTTGTTCTTTTAGTTTTATTCTTGCTCAATTATAGTGCATACTTAGGGATGTGTATCCCGTTTGGGTTAAAGCTGAAGCAACAAACATCTTATTGATAAGATATGGAAGGGGTAAGCGTGCCGGGATAGTTTTTTCATCATGATACATTAGGCCCTCAGGATTTAGTATCTTAGTAATAGTTGATGTACTTTTGGTTTTAACTTTGTGTCAATGAAAATTTTGACTCTTAAAAAATTTAAACCATTTCCAATTCATTACCTAATAAGGAAAAAAGAAATCAGTCATGGTAATTATTAATCTGAAATTGACATAAATAGGAACTGTTTTACCCATTTGAAACATTTTCAACTCCCAGTAGATACTGGTAATGGGATATATATCTACTTAAGATGAAAATTCTGAAATGCCTAGAGTGTATGAGACATGACAAAAGATGAGGAAGAACGAGTGAAAACCAACGGAGGGTTAATCGAACATTTATCCTTGGAATAAGAATATATATATGTTCATTGTATTCTGTGGTATAGAAAATTGAGAAAAGACTTGTATTTTTAAGTTTATATACCTGTATCCTCGTTGTATTATGGCCTGCATTTTACGAGAAACTTCCTCTCTGACCAGTTCTTTTACCTGGTCGGAGAGGAAGTTTCAGATTGATTAATATGGTTAGACTTTCTCGAGTCATATGGATTCTGGTGGAATCTAAAGTTCTTTCTGAAGTACTATCTTTCTACTTTTTACCTTTTCATGGAAATACAGATTAGTCCACTCTGCTTACTCCAAATTACATTTGTTTCAGATTTATTAGATCAAACCAGTTATATTTTTTGTTTCATAAGTCCAATTTTTTTAATAATCAAACACATCGTTGGAAAAAAGGTAAAAGACATGAATGACTGGATGTGACACTTCTCGATAAATCCATCACCTTACACTAAGTTTGACCAAACATCCATACAAGATGGTATTTTCTCCTCGCCTAGATACTAGTGAAACAACAGAGATTTCTTATTACCATCTACACCTGTCTCACACTTTATGGAACAGTCTAGTGTTCCATTCATTTCTTCCTGCCATTATGTCCCTTTTAACTCATAAATGTTTCGGAAGTTGACCTGTTTCTTGAGAAAGTAAAATTACAACTTTAATTAAGGCATCAATAAGATGCTTAGTTACAGAAGGAATCAAGAAATTGATATATTATTGACTGGGCATACTATTATCATATTGACGTATTACATGTGTATGAACCTGACGGATAAGAGATCATTCTGGTTGGGCTTACACTTCATATGTTAAGCATGAATTACTACCTTTTCCTTCATCTTGGCACCATTGCACCCTTCCATTAGATTTCCTTTATAGCTATTTCATTGCCAGTATTTTATTACTTTTGTTTCTGTTTGTTTGACTTATTGTATTATTTAATTTTATTGCTCAAGTAGAACTCATTTGACCTTCCTGTGTAGACAAATCTGATCAAAGAGAGCATTAGGATGGGATACAATGATTTTGGGGATTTCTACTATGCACATGGACAGCTTGGAGAGGCATTTAAGAATTATGTTCGTACACGTGATTATTGCACGACTGCGAAACACATAATCCATATGTGTTTGAATGCGATTCTGGTCAGCATTGAGATGGGCCAGTTCACACATGTTACAAGCTACGTCAGTAAGGCGGAGCAAAGCCAAGATGCTCTAGATGCTATTACAGTTGCAAAACTTCGTTGTGCTGCTGGGTTGGCTCACTTAGAGGCAAAGAAATATAAGCTTGCTGCTCGAAAGGTTTGTTTCTCATTTCCGGCTAATGAGGCCTATTAAGTTGTGGTTCAGTCTTAATGATGTTAAGTGCTTTATGGTCCTCAATCTAGGTTCACAGAAACAAACTTTATTTAGTTTAATGATCTTAGTTTAGTGAAGGTTGAAATGATTTTGGGAACAATCTATCCAGATAACAGTTTGTCTTTGAAGACTAAAAAACACTTTACATACATAAATCACTTACAACAACAACATGCTCAGTATAGTCCACAAATGTTTTTTTTTTTTGGGGGGGGGGGTTACGCAAACCTTATCCCCACCTTTGTAGGATAGAGAGGTTGCTTGCAACAAACCCATCGGTCAAGAAGATTGTTTTTCTGAACAGGTTTGAAAGAAATGCAAGAATAAAAAGTTCTGATGAAAACATTGAAGAATACCATGCGTTTTACTATTCTTTTCCTCTTACTTGATTGAATTGCACCACGGAAGGAATTATGAATCCTTTGTTTTATTTAAGTGACATTTCACTGGGTCGTTGCAGTTCCTGGAAGTTGGTCCAGAATTAGGTAACAACTACACTGAAGTTATTGCACCCCAAGATGTTGCTACTTATGGTGGACTCTGTGCGCTTGCAAGTTTTGACCGAGCAGAACTGAAGGCAATAATACAATATTCTTGTTGCTCTTAAATGCTTTTATTGTCGCAGTTTCATAATTAATACGATGTCACTTGCTGATTCAGATGATTTTGTTTGACAGAGCAAAGTTATTGACAATATAAACTTCAGAAATTTCTTAGAGCTGGTACCCGAGATAAGGGAGCTCATTCATGATTTCTATACAAGGTAAAATTTGAAATCTGTTATGATTTTTTTAATTATATCTATTATGCAGGAAGGTCTCAGTGGTCTAAACATTGGTAGATGCTATCAATCTGATGTGTGTGTTAGAAATGCCCTTTCATGTATTATATTGACTGATGACTTTTTTTTGAGCAATTTGATGGTACTGTTTTGATCCTTGTATTAAGTCAACCCCCTGATAGATAGAGTGGTTGTCGAGAATTAGTGTACCTACTAGTTTGGGGTTGAGGCATTATAGAGTTATTGTGTAATTGAGTATGTAGCAGCTATACTTGCTGTTCCATTTATTACTCTTGGATTAGTAGAAAATGGAAGGATGGAACTTAGGAGAATAGATTATATCCAAGAAGAGACGTAGAGGACTTATCCTGCCCGTCTGTACATTGCGTGTGTCTATAATTTGACAAGTTTCTGTTTTCCTTCAAACTATTATTTCTTTAATCCCACTACAATGTTTGTATGAGTTCAAAATCGAATGAACTGTCGATGTCTGTAGTTGTCTTGGCATTGATTTTCTTACACTGCTCTTTTCTCTCGGTCTTTATCTATGATGCAGTCACTATGCTTCTTGTCTGGAGTATCTAGGGAATCTTAAAGCAAATCTGTTGCTCGACATCCATTTGCATGATCATGTCGAGACACTGTATGATCAAATCCGTAGCAAAGCTTTGATACAGTATACCCACCCATTTGTCTCGGTTGATTTGAATATGATGGCTAATGCTTTCAAGACGAGTGTTGCCGGGTTGGAAAAGGAACTTGAATCTTTGATCACTGACAACCAAATTCAGGTAAAGGACTAGTAACATGCACCTCTGTATCCATCCGCTATGGTGTATTTTTGTTTGGTCAATTTCAATGTATATAAATCATGATGATGGTTACTGTCCTGCAGGCTCGAATTGACTCACACAACAAAATTTTGTATGCACGACATGCTGATCAGAGAAATGCAACCTTCCAGAAGGTGCTGCAGACAGGCAAGGAATTCGATCGGGATGTGAGATCAATGCTTTTGAGAGCAAACCTTCTCAAGCATGACTACATTGCTAGAACGTCAAGAAAACATTGAAACGGAGGAGGATGGTAGCACACAGTTTTGTTTTCCTTGATTGCGAGGTTACGTATGCTGCATGAAGTTGACCAGACAATTGTCTACAGAAGTTGGTTGAGTCTTGGAAAGCCATGTCTTTTGGGGGCTCGAGAAATTTTCCTGGATAATAGAGGGGACTGCTGTTCATATTTATAGATTTACCAGTTGCTGGAAAAGTAAATATTTTTTGCCTGGTCCTACTTGCTGCAACCTTTCTCTGTGATGTGTCATCAACGAATGCTAATCCATTTAGTACCTTGTTTTTTTGTTCATTCAAGATGAAAGATTCCATGTAGCCTATATTGTTGATGCTTATACGTATTCATTAATGGTCATTAGTCTTTGAGTTT</genome_strand>
        <mrna_strand>GTGCAGGATCTATTCAAGTTTTTTCTTCTCAGTGTATCGCTCCCGGAAGAAGTGGTAACAAGACAGAGCAAAAACCCTAGCTCCGATCAAACATTATACAAATTAATATCCGATGGAGCCTGACGAGGATTTAGGGCTAATAGCCGAAGAGATCTACGCCAACGGCGATGAGAACAAGCAGCGTCATCGGCCGATTATCAGCGGCGAGCAGCTCGATATTGAGGCGTACGCCGCCTTGTACAGTGGCCGGACAAAAATCATGAGGCTTCTCTTCATAGCCGATCGATGTGGCAATGCTTCAATGCAATTGGAGGCTTTGAGAATGGCCTATGATGAGATTAAGAAAGGGGAAAACACACAATTGTTCCGTGAGGTTGTGCAGAAAATCGATGGACGTTTGGGCACTAATTATGGGCCAGACCCTGCTTGGGCTGACTCTGTGGATCGCCGGGCTGATCTGAGGAAGGAGAAGCTTGAGAGCGAACTCAACGCTTATAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATCTGATCAAAGAGAGCATTAGGATGGGATACAATGATTTTGGGGATTTCTACTATGCACATGGACAGCTTGGAGAGGCATTTAAGAATTATGTTCGTACACGTGATTATTGCACGACTGCGAAACACATAATCCATATGTGTTTGAATGCGATTCTGGTCAGCATTGAGATGGGCCAGTTCACACATGTTACAAGCTACGTCAGTAAGGCGGAGCAAAGCCAAGATGCTCTAGATGCTATTACAGTTGCAAAACTTCGTTGTGCTGCTGGGTTGGCTCACTTAGAGGCAAAGAAATATAAGCTTGCTGCTCGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTGGAAGTTGGTCCAGAATTAGGTAACAACTACACTGAAGTTATTGCACCCCAAGATGTTGCTACTTATGGTGGACTCTGTGCGCTTGCAAGTTTTGACCGAGCAGAACTGAAG....................................................................................................AGCAAAGTTATTGACAATATAAACTTCAGAAATTTCTTAGAGCTGGTACCCGAGATAAGGGAGCTCATTCATGATTTCTATACAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTATGCTTCTTGTCTGGAGTATCTAGGGAATCTTAAAGCAAATCTGTTGCTCGACATCCATTTGCATGATCATGTCGAGACACTGTATGATCAAATCCGTAGCAAAGCTTTGATACAGTATACCCACCCATTTGTCTCGGTTGATTTGAATATGATGGCTAATGCTTTCAAGACGAGTGTTGCCGGGTTGGAAAAGGAACTTGAATCTTTGATCACTGACAACCAAATTCAG........................................................................................................GCTCGAATTGACTCACACAACAAAATTTTGTATGCACGACATGCTGATCAGAGAAATGCAACCTTCCAGAAGGTGCTGCAGACAGGCAAGGAATTCGATCGGGATGTGAGATCAATGCTTTTGAGAGCAAACCTTCTCAAGCATGACTACATTGCTAGAACGTCAAGAAAACATTGAAACGGAGGAGGATGGTAGCACACAGTTTTGTTTTCCTTGATTGCGAGGTTACGTATGCTGCATGAAGTTGACCAGACAATTGTCTACAGAAGTTGGTTGAGTCTTGGAAAGCCATGTCTTTTGGGGGCTCGAGAAATTTTCCTGGATAATAGAGGGGACTGCTGTTCATATTTATAGATTTACCAGTTGCTGGAAAAGTAAATATTTTTTGCCTGGTCCTACTTGCTGCAACCTTTCTCTGTGATGTGTCATCAACGAATGCTAATCCATTTAGTACCTTGTTTTTTTGTTCATTCAAGATGAAAGATTCCATGTAGCCTATATTGTTGATGCTTATACGTATTCATTAATGGTCATTAGTCTTTGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600515" ref_strand="+" ref_description="SGN-U600515 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|7981382|emb|CAB91875.1| (e_value=2e-84) putative alcohol dehydrogenase [Lycopersicon esculentum]; (*ATH) AT2G47140.1 (e_value=9e-66) | Symbol: None | short-chain dehydrogenase/reductase (SDR) family protein, similar to 3-beta-hydroxysteroiddehydrogenase GI:15983819 from (Digitalis lanata) | chr2:19357810-19359158 REVERSE | Aliases: F14M4.3; (*SWP) sp|P50160|TS2_MAIZE (e_value=5e-49) Sex determination protein tasselseed-2 OS=Zea mays GN=TS2; ">
      <seq>gnnnttacggccgggggtanntccaagagcgaaaaaatgtcnnaagagagaaggaggttctaaaaacaatatctaagttatccggcgctgcancaagaaaattgctgattttccaatggcaaataagctcaggttagagggtaaagtagctgtaataacaggtggtgctagtggcattggtgaagcagcagccagattgttcgttgaacatggggcccgcgtcgttattgcggacattcaggatgaacttgctctccaagtcgcgtcctctatcggatcagacaacgtctgttaccaacgctgtgatgtaagcgatgagaaacaagtaaatgaaactgtcgcatttgctgttgaaaaatacggtacactcgatataatgttcagtaatgccggcatactcaacccattcgagagcatactcgaaatggatatgacggtgtttgacaggacgattgctgttaacgcgcggggagccgcgttagccgtgaagcacgcggctagagtgatggtagctaataagatccgcggctccataatatgtacagctagcgtggagtcaattctagctggtgcagctccgttagcgtacatcgcatcgaagcacgccgtcctcggcgtagtgaaagctgcggcgcgtgagttggggcaacatggaatacgagtgaattgtgtatcgcctttcggcatagcgacnccgatggtgtgcaaatcgtttggngctgatgcggcggctattgaagctaaaatatgtggaaatgcaaacttngaannngtttctttanccncnangcntatnncnnaanc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="-" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="119978" stop="118514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119674" g_stop="119563" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="132" r_length="112" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119562" i_stop="119450" i_length="113">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119449" g_stop="118778" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="804" r_length="672" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="-" ref_id="SGN-U600515" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119674" e_stop="119563"/>
          <exon e_start="119449" e_stop="118778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAAGAGCGAAAAAATGTCAGAAGAGAGAAGGAGGTTCTAAAAACAATATCTAAGTTATCCGGCGCTGCAGCAAGAAAATTGCTGATTTTCCAATGGCAAATAAGCTCAGGTAATCAATTTCGTTTACATTTGATCTCACTATCCGCGAATAAAAAATAAATGAGATTTTTAAATTTTTTCGTCACGATATATGTTTGTGCCTTTTTTTTTTTGTGGCATCAGGTTAGAGGGTAAAGTAGCTGTAATAACAGGTGGTGCTAGTGGCATTGGTGAAGCAGCAGCCAGATTGTTCGTTGAACATGGGGCCCGCGTCGTTATTGCGGACATTCAGGATGAACTTGCTCTCCAAGTCGCGTCCTCTATCGGATCAGACAACGTCTGTTACCAACGCTGTGATGTAAGCGATGAGAAACAAGTAAATGAAACTGTCGCATTTGCTGTTGAAAAATACGGTACACTCGATATAATGTTCAGTAATGCCGGCATACTCAACCCATTCGAGAGCATACTCGAAATGGATATGACGGTGTTTGACAGGACGATTGCTGTTAACGCGCGGGGAGCCGCGTTAGCCGTGAAGCACGCGGCTAGAGTGATGGTAGCTAATAAGATCCGCGGCTCCATAATATGTACAGCTAGCGTGGAGTCAATTCTAGCTGGTGCAGCTCCGTTAGCGTACATCGCATCGAAGCACGCCGTCCTCGGCGTAGTGAAAGCTGCGGCGCGTGAGCTGGGGCAACATGGAATACGAGTGAATTGTGTATCGCCTTTCGGCATAGCGACGCCGATGGTGTGCAAATCGTTTGGCGCTGATGCGGCGGCTATTGAAGCTAAAATATGTGGAAATGCAAACTTGAAAGGTGTTTCTTTAACCACAATGCATATAGCAGAAGC</genome_strand>
        <mrna_strand>NTCCAAGAGCGAAAAAATGTCNNAAGAGAGAAGGAGGTTCTAAAAACAATATCTAAGTTATCCGGCGCTGCANCAAGAAAATTGCTGATTTTCCAATGGCAAATAAGCTCAG.................................................................................................................GTTAGAGGGTAAAGTAGCTGTAATAACAGGTGGTGCTAGTGGCATTGGTGAAGCAGCAGCCAGATTGTTCGTTGAACATGGGGCCCGCGTCGTTATTGCGGACATTCAGGATGAACTTGCTCTCCAAGTCGCGTCCTCTATCGGATCAGACAACGTCTGTTACCAACGCTGTGATGTAAGCGATGAGAAACAAGTAAATGAAACTGTCGCATTTGCTGTTGAAAAATACGGTACACTCGATATAATGTTCAGTAATGCCGGCATACTCAACCCATTCGAGAGCATACTCGAAATGGATATGACGGTGTTTGACAGGACGATTGCTGTTAACGCGCGGGGAGCCGCGTTAGCCGTGAAGCACGCGGCTAGAGTGATGGTAGCTAATAAGATCCGCGGCTCCATAATATGTACAGCTAGCGTGGAGTCAATTCTAGCTGGTGCAGCTCCGTTAGCGTACATCGCATCGAAGCACGCCGTCCTCGGCGTAGTGAAAGCTGCGGCGCGTGAGTTGGGGCAACATGGAATACGAGTGAATTGTGTATCGCCTTTCGGCATAGCGACNCCGATGGTGTGCAAATCGTTTGGNGCTGATGCGGCGGCTATTGAAGCTAAAATATGTGGAAATGCAAACTTNGAANNNGTTTCTTTANCCNCNANGCNTATNNCNNAANC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582327" ref_strand="+" ref_description="SGN-U582327 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|147838438|emb|CAN63254.1| (e_value=1e-94) hypothetical; (*ATH) AT4G24220.1 (e_value=3e-90) | Symbol: None | expressed protein, protein induced upon wounding - Arabidopsis thaliana, PID:e257749 | chr4:12564955-12567274 FORWARD | Aliases: T22A6.50, T22A6_50; ">
      <seq>ggggaacacctaattaacgagttcatacttttgccaatcagcacactttcttagaatgaactggtggttgtcaagatccatccataatgcacagcagaaaaatgttgagtatcgcggaacacatgaaaatgttggccttattattggagtgactggtgtagttggcaacagtttggctggaacactctcatccactgacaccccaggcggcccgtggaagatctacggtgtgtcaagacgagggacgccagtctgtagcattgctaaagtcacatacattcaatgcgatgtctctaaatcaactgatgtacaagccaaattatcgaccctaaaagatgtgacacacatcttttgggtgacttcggcttttgacctttccacttccaaatgttgtgaaatcaatggaacaatgtttcgtaatgtcctcacctgtgtcataccaaatgcacctaatttacgccacatctgtctccagacgggcgggatgcattatatggaaattcacagatcaattgatgggaaactctgtgtaacttctcatgatccgcctttccatgaagacatgaaaagattggaaaacgttcacaacttctactacacgttagaagatgtattgttcgatgaagtatctagaaaaccaaccctaacatggtccgtccatagacctgatttgattttcgggttttcaccttatagcacgttgaacattattggaacactttgtgtatacgcaacgatatgcaaattcatacacatcccgatgaagtttccaggtacagaagctgtttgggatagctattcgaatgcatcagatgctaatttggtggcagagcatcaaatttgggcagcaatgtgtgcacaggggaaaaacagggcattcaacattactaacggtgatgtgttcaaatggaagncatttgtggaaggtattggcggaagaaattggagttgaatatgtggaattcnacgcgacgganaanantatttcattgtccnagatgatgaangataangggcctgtgtgggataagantgngaaaganaataanttgantccnacaaagttanaanangntggattgtggggttttgcanatnngttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="+" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="126390" stop="128221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126686" g_stop="126782" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126783" i_stop="126913" i_length="131">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126914" g_stop="127921" g_length="1008"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="1106" r_length="1009" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="+" ref_id="SGN-U582327" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>1105</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126686" e_stop="126782"/>
          <exon e_start="126914" e_stop="127921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACACCTAATTAACGAGTTCATACTTTTGCCAATCAGCACACTTTCTTAGAATGAACTGGTGGTTGTCAAGATCCATCCATAATGCACAGCAGGTAAGAAGAGATTGACCAGATAATATCACAAAAGAATTCTGTTATTTCCAAATTTTTTTGTAATTTTTCATCTGCTTTTTTCAATTTTAGATCAAACATTTACATGTGTGTCAAAAACTTATGAATCGCAGAAAAATGTTGAGTATCGCGGAACACATGAAAATGTTGGCCTTATTATTGGAGTGACTGGTGTAGTTGGCAACAGTTTGGCTGGAACACTCTCATCCACTGACACCCCAGGCGGCCCGTGGAAGATCTACGGTGTGTCAAGACGAGGGACGCCAGTCTGTAGCATTGCTAAAGTCACATACATTCAATGCGATGTCTCTAAATCAACTGATGTACAAGCCAAATTATCGACCCTAAAAGATGTGACACACATCTTTTGGGTGACTTCGGCTTTTGACCTTTCCACTTCCAAATGTTGTGAAATCAATGGAACAATGTTTCGTAATGTCCTCACCTGTGTCATACCAAATGCACCTAATTTACGCCACATCTGTCTCCAGACGGGCGGGATGCATTATATGGAAATTCACAGATCAATTGATGGGAAACTCTGTGTAACTTCTCATGATCCGCCTTTCCATGAAGACATGAAAAGATTGGAAAACGTTCACAACTTCTACTACACGTTAGAAGATGTATTGTTCGATGAAGTATCTAGAAAACCAACCCTAACATGGTCCGTCCATAGACCTGATTTGATTTTCGGGTTTTCACCTTATAGCACGTTGAACATTATTGGAACACTTTGTGTATACGCAACGATATGCAAATTCATACACATCCCGATGAAGTTTCCAGGTACAGAAGCTGTTTGGGATAGTTATTCGAATGCATCAGATGCTAATTTGGTGGCAGAGCATCAAATTTGGGCAGCAATGTGTGCACAGGGGAAAAACAGGGCATTCAACATTACTAACGGTGATGTGTTCAAATGGAAG-CATTTGTGGAAGGTATTGGCGGAAGAAATTGGAGTTGAATATGTGGAATTCAACGCGACGGAGAAGATTATTTCATTGTCCGAGATGATGAAGGATAAGGGGCCTGTGTGGGATAAGATTGTGAAAGACAATAAGTTGATTCCGACAAAGTTAGAAGAGGTTGGATTGTGGGGTTTTGCAGATATGTTACTA</genome_strand>
        <mrna_strand>GGGGAACACCTAATTAACGAGTTCATACTTTTGCCAATCAGCACACTTTCTTAGAATGAACTGGTGGTTGTCAAGATCCATCCATAATGCACAGCAG...................................................................................................................................AAAAATGTTGAGTATCGCGGAACACATGAAAATGTTGGCCTTATTATTGGAGTGACTGGTGTAGTTGGCAACAGTTTGGCTGGAACACTCTCATCCACTGACACCCCAGGCGGCCCGTGGAAGATCTACGGTGTGTCAAGACGAGGGACGCCAGTCTGTAGCATTGCTAAAGTCACATACATTCAATGCGATGTCTCTAAATCAACTGATGTACAAGCCAAATTATCGACCCTAAAAGATGTGACACACATCTTTTGGGTGACTTCGGCTTTTGACCTTTCCACTTCCAAATGTTGTGAAATCAATGGAACAATGTTTCGTAATGTCCTCACCTGTGTCATACCAAATGCACCTAATTTACGCCACATCTGTCTCCAGACGGGCGGGATGCATTATATGGAAATTCACAGATCAATTGATGGGAAACTCTGTGTAACTTCTCATGATCCGCCTTTCCATGAAGACATGAAAAGATTGGAAAACGTTCACAACTTCTACTACACGTTAGAAGATGTATTGTTCGATGAAGTATCTAGAAAACCAACCCTAACATGGTCCGTCCATAGACCTGATTTGATTTTCGGGTTTTCACCTTATAGCACGTTGAACATTATTGGAACACTTTGTGTATACGCAACGATATGCAAATTCATACACATCCCGATGAAGTTTCCAGGTACAGAAGCTGTTTGGGATAGCTATTCGAATGCATCAGATGCTAATTTGGTGGCAGAGCATCAAATTTGGGCAGCAATGTGTGCACAGGGGAAAAACAGGGCATTCAACATTACTAACGGTGATGTGTTCAAATGGAAGNCATTTGTGGAAGGTATTGGCGGAAGAAATTGGAGTTGAATATGTGGAATTCNACGCGACGGANAANANTATTTCATTGTCCNAGATGATGAANGATAANGGGCCTGTGTGGGATAAGANTGNGAAAGANAATAANTTGANTCCNACAAAGTTANAANANGNTGGATTGTGGGGTTTTGCANATNNGTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601695" ref_strand="+" ref_description="SGN-U601695 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205399|gb|AAU90302.2| (e_value=2e-29) Ulp1; ">
      <seq>gcttctcaattttgaaaatcaaaatttgtgctctccatccgtcagccttcgtctaaactgtccgccatttttgtctactttgtcagcctttgaaaatcaaaattgtgctctccgtccgtccgtcttcgtctaatctgtccgccatttagtgtctactctgtccgccttaaaaaatcaaatcgccaatttcgtctactctgtccgccattttcgtccaatattcttgaaagattgggcagcattggatgcatataaagacaagaaaactggagaacttttgggtccacaacattcgtttaatgtggagtttgctcaagacaacatgcaacaaataagtgatagccttgattgcggactattcgtaattgtatatgcagaattctgagtgacaaaatcaacatgtcatgtaatagttttaagagtagctatcttcgcaaaagatatgcgattcttttattgaagtatggtctcgacaagatgaatgctggatatgttagcaacagtgatgacccttcaagaatgaagaatgtattaaacccatcatctgaagatgaaattgttaatgtaggctagttagttttcaatgtttgatttttttttgttttttggagttaaacaagatgtttgaagtatttattgacataacaacacatattgttaaattatgaaagtgttttgattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01SLm0026F20-OLSO5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01SLm0026F20.1" temp_strand="+" temp_description="C01SLm0026F20.1  AC217915.1 htgs_phase:3 submitted_to_sgn_as:020508.C2 upload_account_name:manual 020508.assem.ace.1 from 1 to 133957">
        <position start="129814" stop="131833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130113" g_stop="130341" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130342" i_stop="131008" i_length="667">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131009" g_stop="131123" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="345" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131124" i_stop="131197" i_length="74">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131198" g_stop="131533" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="684" r_length="339" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01SLm0026F20.1" gen_strand="+" ref_id="SGN-U601695" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01SLm0026F20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U601695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130113" e_stop="130341"/>
          <exon e_start="131009" e_stop="131123"/>
          <exon e_start="131198" e_stop="131533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCAATTTTGAAAATCAAAATTTGTGCTCTCCATCCGTCAGCCTTCGTCTAATCTGTCCGCCATTTTTGTCTACTTTGTCAGCCTTTGAAAATCAAAATTGTGCTCTCCGTCCGTCCGTCTTCGTCTAATCTGTCCGCCATTT-TTGTCTATTCTGTCCGCCTTAAAAAATCAAATCGCCAATTTCGTCTACTCTGTCCGCCATTTTCGTCCAATATTCTTGAAAGGTATTGTGTTCTTCTTCGATTCTCTCTTTTCATTCTTCTATTTTTCTAATATTTCATGGATCATCTGTCATTTAGTATTGGGATTACTCAAATAATCACTTCAAACTCTAAACAAATCTATATTTTTGAAGATCCGAAATTGGTTGAAAACAAGTCTAAGAGCTTGCATAATTGGTTTGCATTGTGTTGTTACAATTATGTATCAAGCACAATTTATGTTTCATGTATCATGTTAAAGTTTGTCGTTTATATAAAGTATCAAGTAGACAGACTTATAACTATAGTTACACGTATGTATCAAGTACAACTTTGCATTTTTTGTATCATGTTAGTATCAAGTAGACAGACTTATAACTGTAGTTACACTTATGTATCAAGTACAACTTTGCATTTTTTGTATCATGTTAGGCTGTAAAGTGTCTGTTAAGTATCATTTTGACTGACGTATGATATGTTGTTAGAATTATGTATCAAGTTTATTTTTGCATTTTATGTATCATATTAACAACTTTGCATTTTTTGTATCATGTTAGTATCAAGTAGACAGACTTATAATTGTAGTTACCTTTATGTATCAAGTATAACTTTGCATTTTTTGTATCATGTTAGGCTATAAAGTGTCTGTTAAGTATCATTTTGACTGACTTATGATATGTTGTTAGAACAGATTGGGCAGCATTGGATGCATATAAAGACAAGAAAACTGGAGAACTTTTGGGTCCACAACATTCGTTTAATGTGGAGTTTGCTCAAGACAACATGCAACAAATAAGTGATAGCCTGTGAGTATTGTTTATTATTTTATTTTATTTTTTGTATCTATTCATCCTTATAATTATTCTTATTGTTTTTGTAGTGATTGCGGACTATTCGTAGTTGTATATGCAGAATTCTGAGTGACAAAATCAACATGTCATGTAATAGTTTTAAGAGTAGCTATCTTCGCAAAAGATATGCGATTCTTTTATTGAAGTATGGTCTCGACAAGATGAATGCTGGATATGTTAGCAACAGTGATGACCCTTCAAGAATGAACAATGTATTAAACCCATCATCTGAAGATGAAATTGTTAATGTAGGCTAGTTAGTTTTCAATGTTTGATTATTTTTT-TTT--TGGAGTTAAACAAGATGTTTGAAGTATTTATTAACATAACAACACATATTGTTAAATTATGAAAGTGTTTTGATTTTT</genome_strand>
        <mrna_strand>GCTTCTCAATTTTGAAAATCAAAATTTGTGCTCTCCATCCGTCAGCCTTCGTCTAAACTGTCCGCCATTTTTGTCTACTTTGTCAGCCTTTGAAAATCAAAATTGTGCTCTCCGTCCGTCCGTCTTCGTCTAATCTGTCCGCCATTTAGTGTCTACTCTGTCCGCCTTAAAAAATCAAATCGCCAATTTCGTCTACTCTGTCCGCCATTTTCGTCCAATATTCTTGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCAGCATTGGATGCATATAAAGACAAGAAAACTGGAGAACTTTTGGGTCCACAACATTCGTTTAATGTGGAGTTTGCTCAAGACAACATGCAACAAATAAGTGATAGCCT..........................................................................TGATTGCGGACTATTCGTAATTGTATATGCAGAATTCTGAGTGACAAAATCAACATGTCATGTAATAGTTTTAAGAGTAGCTATCTTCGCAAAAGATATGCGATTCTTTTATTGAAGTATGGTCTCGACAAGATGAATGCTGGATATGTTAGCAACAGTGATGACCCTTCAAGAATGAAGAATGTATTAAACCCATCATCTGAAGATGAAATTGTTAATGTAGGCTAGTTAGTTTTCAATGTTTGATTTTTTTTTGTTTTTTGGAGTTAAACAAGATGTTTGAAGTATTTATTGACATAACAACACATATTGTTAAATTATGAAAGTGTTTTGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>26</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4027" PGL_stop="2581"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4027" e_stop="3708"/>
            <exon e_start="2672" e_stop="2581"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.536" e_score="0.909"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="4027" e_stop="3708" e_length="320"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.536">
            <gDNA_intron_boundary i_start="3707" i_stop="2673" i_length="1035"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2672" e_stop="2581" e_length="92"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4027" stop="3708"/>
              <exon start="2672" stop="2581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594980" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAATTGAAGCAACAAATCGACGAAAAAAAGCACCGTTCGATCTTCGAATTACCAGCGAACTTCTTTGATTCCTGCCGCCTTCTCCAATCTCCGTCAGCTTCGCCACTCTCCATAGTCGAACCACTCGAAAGTCTCTCAGTCAAAACCCTAGACGACGTAGACATTGATGACGAATCCAAAAAGGAAGTGGAGAATACGGAGAGTTTGAGTAGTAGGAATAACCCCAAACAAAGGTGGTCTTGCAATACTTGTAAGGCCGAGTTTGAGTCTCTCCATGACCAGCGTTCTCACTTCAAATCCGATATTCATCGACTAAAT : ATAAAGCTAAGCATTTCTGGGAGAGACACTATTAAGGAAGAAGACTTTGATGAGATGACATCTGATTCCCTATGTAAGGATTATGATTTATC</gDNA_template>
            <first_frame> I  N  *  S  N  K  S  T  K  K  S  T  V  R  S  S  N  Y  Q  R  T  S  L  I  P  A  A  F  S  N  L  R  Q  L  R  H  S  P  *  S  N  H  S  K  V  S  Q  S  K  P  *  T  T  *  T  L  M  T  N  P  K  R  K  W  R  I  R  R  V  *  V  V  G  I  T  P  N  K  G  G  L  A  I  L  V  R  P  S  L  S  L  S  M  T  S  V  L  T  S  N  P  I  F  I  D  *  I :   *  S  *  A  F  L  G  E  T  L  L  R  K  K  T  L  M  R  *  H  L  I  P  Y  V  R  I  M  I  Y  </first_frame>
            <second_frame>  S  I  E  A  T  N  R  R  K  K  A  P  F  D  L  R  I  T  S  E  L  L  *  F  L  P  P  S  P  I  S  V  S  F  A  T  L  H  S  R  T  T  R  K  S  L  S  Q  N  P  R  R  R  R  H  *  *  R  I  Q  K  G  S  G  E  Y  G  E  F  E  *  *  E  *  P  Q  T  K  V  V  L  Q  Y  L  *  G  R  V  *  V  S  P  *  P  A  F  S  L  Q  I  R  Y  S  S  T  K   : Y  K  A  K  H  F  W  E  R  H  Y  *  G  R  R  L  *  *  D  D  I  *  F  P  M  *  G  L  *  F  I </second_frame>
            <third_frame>   Q  L  K  Q  Q  I  D  E  K  K  H  R  S  I  F  E  L  P  A  N  F  F  D  S  C  R  L  L  Q  S  P  S  A  S  P  L  S  I  V  E  P  L  E  S  L  S  V  K  T  L  D  D  V  D  I  D  D  E  S  K  K  E  V  E  N  T  E  S  L  S  S  R  N  N  P  K  Q  R  W  S  C  N  T  C  K  A  E  F  E  S  L  H  D  Q  R  S  H  F  K  S  D  I  H  R  L  N  :  I  K  L  S  I  S  G  R  D  T  I  K  E  E  D  F  D  E  M  T  S  D  S  L  C  K  D  Y  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4025" stop="3708"/>
                    <exon start="2672" stop="2583"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLKQQIDEKKHRSIFELPANFFDSCRLLQSPSASPLSIVEPLESLSVKTLDDVDIDDESKKEVENTESLSSRNNPKQRWSCNTCKAEFESLHDQRSHFKSDIHRLNIKLSISGRDTIKEEDFDEMTSDSLCKDYDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="7035" PGL_stop="8107"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7035" e_stop="8107"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="7035" e_stop="8107" e_length="1073"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7035" stop="8107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573257" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGAATTAAGAGAGGAGATAAATTAATACTGTGATACTGTTTAGCCACTTTCTCTTCCATCCACAGAATGGAATCAGAAGGGCTTTGCACATTAGAAAAGAGAGGCAATATCTTCCTCCTAATTTTAACCGGCACCGGTGACCACCGTTTACATCCCAACCTTATCGACTCCATCTCTGCCGCTCTCCGCCGCGTCAGATCCGACTCTACTTCCTCTTCCTCCGCTCTGATTACCACAGCCCAAGGCAAATACTTCTCCAATGGTTACGATCTTAAGTGGGCCTTAGTGGACAACGCCCGCCAAAAACTCATGTCCAGAAAACTCCGATGTCTCGTTTCCGACCTAATAACCCTACCTATGCCAACAATCGCCGCCGTCACCGGTCACGCTTCCGCTGCCGGCTTCGTTTTCGCGCTTTGCCATGACTACATCTTGATGCGCAAAGATCGAGGGTTTCTCTACATGAGCGAGCTGGATATTGGGTTTCCGATACCGACTTGGTTTTCGGCTTTAGTGAAGTGCAGAATGGGATCGCCAGCGGTCCGGCGTGAGGTGGTGATGAAGGCTGCTAAAGTAACGGCTGAGATGGGAGTCGAAATGGGTTTTGTGGATTCGGCTCATAGTGGAGCGGAAGAAACTGTGGAGGCAGCAATTAAGTTGAGTGAAGAATTGGTGAGCAGAAATTGGGATGGAAAAACGTACGCTGCATGTAGAAAAACACTGTTTGTGGAGCTACTGAATTCGCTTGGTTCTGATGAGACTGTGGGAGATTATGGGGACGAGGATGCAAACAAAACACTAGCCAAGCTGTAAGTAGTATCTCATGGATTATATTATACGAACTTTTAAAAAATATTATCGCAGAGCGTTCGATTCTTCGAAAACGGCTCCACAACGAAGGAATAGAAATGCTGGTTTCCTTCGATCAATTTGCTTGTGTCTCTTTCCGTCTTAGTAATATTTGTGCGCTTTTACTTGTATTAGTATGGTATCACTGAATTATGAGTATTATTTATATAATATAAAATGTACTAAAATGTTTATCCTTTTATCTAATGTCAATTATTATCT</gDNA_template>
            <first_frame> *  E  L  R  E  E  I  N  *  Y  C  D  T  V  *  P  L  S  L  P  S  T  E  W  N  Q  K  G  F  A  H  *  K  R  E  A  I  S  S  S  *  F  *  P  A  P  V  T  T  V  Y  I  P  T  L  S  T  P  S  L  P  L  S  A  A  S  D  P  T  L  L  P  L  P  P  L  *  L  P  Q  P  K  A  N  T  S  P  M  V  T  I  L  S  G  P  *  W  T  T  P  A  K  N  S  C  P  E  N  S  D  V  S  F  P  T  *  *  P  Y  L  C  Q  Q  S  P  P  S  P  V  T  L  P  L  P  A  S  F  S  R  F  A  M  T  T  S  *  C  A  K  I  E  G  F  S  T  *  A  S  W  I  L  G  F  R  Y  R  L  G  F  R  L  *  *  S  A  E  W  D  R  Q  R  S  G  V  R  W  *  *  R  L  L  K  *  R  L  R  W  E  S  K  W  V  L  W  I  R  L  I  V  E  R  K  K  L  W  R  Q  Q  L  S  *  V  K  N  W  *  A  E  I  G  M  E  K  R  T  L  H  V  E  K  H  C  L  W  S  Y  *  I  R  L  V  L  M  R  L  W  E  I  M  G  T  R  M  Q  T  K  H  *  P  S  C  K  *  Y  L  M  D  Y  I  I  R  T  F  K  K  Y  Y  R  R  A  F  D  S  S  K  T  A  P  Q  R  R  N  R  N  A  G  F  L  R  S  I  C  L  C  L  F  P  S  *  *  Y  L  C  A  F  T  C  I  S  M  V  S  L  N  Y  E  Y  Y  L  Y  N  I  K  C  T  K  M  F  I  L  L  S  N  V  N  Y  Y   </first_frame>
            <second_frame>  K  N  *  E  R  R  *  I  N  T  V  I  L  F  S  H  F  L  F  H  P  Q  N  G  I  R  R  A  L  H  I  R  K  E  R  Q  Y  L  P  P  N  F  N  R  H  R  *  P  P  F  T  S  Q  P  Y  R  L  H  L  C  R  S  P  P  R  Q  I  R  L  Y  F  L  F  L  R  S  D  Y  H  S  P  R  Q  I  L  L  Q  W  L  R  S  *  V  G  L  S  G  Q  R  P  P  K  T  H  V  Q  K  T  P  M  S  R  F  R  P  N  N  P  T  Y  A  N  N  R  R  R  H  R  S  R  F  R  C  R  L  R  F  R  A  L  P  *  L  H  L  D  A  Q  R  S  R  V  S  L  H  E  R  A  G  Y  W  V  S  D  T  D  L  V  F  G  F  S  E  V  Q  N  G  I  A  S  G  P  A  *  G  G  D  E  G  C  *  S  N  G  *  D  G  S  R  N  G  F  C  G  F  G  S  *  W  S  G  R  N  C  G  G  S  N  *  V  E  *  R  I  G  E  Q  K  L  G  W  K  N  V  R  C  M  *  K  N  T  V  C  G  A  T  E  F  A  W  F  *  *  D  C  G  R  L  W  G  R  G  C  K  Q  N  T  S  Q  A  V  S  S  I  S  W  I  I  L  Y  E  L  L  K  N  I  I  A  E  R  S  I  L  R  K  R  L  H  N  E  G  I  E  M  L  V  S  F  D  Q  F  A  C  V  S  F  R  L  S  N  I  C  A  L  L  L  V  L  V  W  Y  H  *  I  M  S  I  I  Y  I  I  *  N  V  L  K  C  L  S  F  Y  L  M  S  I  I  I  </second_frame>
            <third_frame>   R  I  K  R  G  D  K  L  I  L  *  Y  C  L  A  T  F  S  S  I  H  R  M  E  S  E  G  L  C  T  L  E  K  R  G  N  I  F  L  L  I  L  T  G  T  G  D  H  R  L  H  P  N  L  I  D  S  I  S  A  A  L  R  R  V  R  S  D  S  T  S  S  S  S  A  L  I  T  T  A  Q  G  K  Y  F  S  N  G  Y  D  L  K  W  A  L  V  D  N  A  R  Q  K  L  M  S  R  K  L  R  C  L  V  S  D  L  I  T  L  P  M  P  T  I  A  A  V  T  G  H  A  S  A  A  G  F  V  F  A  L  C  H  D  Y  I  L  M  R  K  D  R  G  F  L  Y  M  S  E  L  D  I  G  F  P  I  P  T  W  F  S  A  L  V  K  C  R  M  G  S  P  A  V  R  R  E  V  V  M  K  A  A  K  V  T  A  E  M  G  V  E  M  G  F  V  D  S  A  H  S  G  A  E  E  T  V  E  A  A  I  K  L  S  E  E  L  V  S  R  N  W  D  G  K  T  Y  A  A  C  R  K  T  L  F  V  E  L  L  N  S  L  G  S  D  E  T  V  G  D  Y  G  D  E  D  A  N  K  T  L  A  K  L  *  V  V  S  H  G  L  Y  Y  T  N  F  *  K  I  L  S  Q  S  V  R  F  F  E  N  G  S  T  T  K  E  *  K  C  W  F  P  S  I  N  L  L  V  S  L  S  V  L  V  I  F  V  R  F  Y  L  Y  *  Y  G  I  T  E  L  *  V  L  F  I  *  Y  K  M  Y  *  N  V  Y  P  F  I  *  C  Q  L  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7070" stop="7849"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCLATFSSIHRMESEGLCTLEKRGNIFLLILTGTGDHRLHPNLIDSISAALRRVRSDSTSSSSALITTAQGKYFSNGYDLKWALVDNARQKLMSRKLRCLVSDLITLPMPTIAAVTGHASAAGFVFALCHDYILMRKDRGFLYMSELDIGFPIPTWFSALVKCRMGSPAVRREVVMKAAKVTAEMGVEMGFVDSAHSGAEETVEAAIKLSEELVSRNWDGKTYAACRKTLFVELLNSLGSDETVGDYGDEDANKTLAKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="13388" PGL_stop="11868"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13388" e_stop="11868"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="13388" e_stop="11868" e_length="1521"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13388" stop="11868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580319" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTGCTAACATACACCATGACTACCCTACACTTCTTCCTCTTCACTCTCCTTACCGTTTCCGTTCATGCACACAACATCACTGAAATTTTGAACAAGTTCCCGGAGTACAGTGTATTCAACAGTTATCTCTCACAAACTAAACTCGCCGACGAGATTAACAGCCGTGAAACTATTACCGTTTTAGCTTTGCCTAATGGAGCTATGTCTGCTATAGTCGACAAACATCCACTTTCCGTCATCAAAAATGTCCTCTCTCTTCATGTTTTGCTTGATTACTTTGACGGTACTAAACTTCATAAGATCTCCGACGGTACTACGACTTCCACTACTCTTTACCAAACTACCGGCAATGCTCATGGAAACATAGGTTCTGTTAACATTACCGATCTTAAAGGTGGTAAAGTAGGTTTTGGTTCAGCTATTCCGAACTCACCATTGGCGTCTACATATACTAAATCTGTGAAGCAAATCCAGTATAATATCTCTGTGTTGGAAGTTAGTGCTCCGATTATTGCTCCGGGTATTTTGACGGCACCGGCGCCATCTGGTGATTTTAATATTACTGGTGCATTGGAGAAAGCTGGGTGTAAAACATTTGCTTCATTACTTGTCAAATCTGGAGTTCTCAAGACGTATCAAACTGCTATTGAGAAGGGTTTGACTATTTTTGCCCCAAATGATGAGGCGTTTAAGGGAGCTAAAGTTCCAGATCTGAGCGATCTCAGTAGCGCTGATGTTGTTTCGTTGTTGCAGTACCATGCTATTCCGAGTTACACTCCTATTGGAACCTTGAAAACGACGAAGGATCCGATTTCAACTCTAGCTACTAATGGCGCTAGCAAGTATGATCTGGCAGTTTCAACAGAAGGTGACCAGGTGACACTTGACACAGGTGTCGATTCGTCCAGAATCGCTTCCACAGTCATTGACTCTACTCCCTTCTGCATTTTCACCGTCGACAGTGTGCTTCTACCTGTGGAATTGTACGGAAAAGCTCCATCCCCAGCACCAGGACCAGCTCCGGAGACTTCTCCAACACCAGCACCAGCCCCTGCTCCGGAAGCCAGCTCTCCTACTCCAATGATGTCTCCTCCTGCTCCACCGACTTCATCTCCAGCTGGTTCTCCGGCGGATAGTCCCACTGCAGATTCGGAGAACAGTACGGCGAAGAAGAACGCCGGTAACGTTAACACTCCGGCGCTACTGAAAGCTCTACTCACAGTGTCAGTTTCGGTAATTGTGTCCGTTTATTTGTCCTAAACCGCCATTTTCCGTTTGTTTAATTAAATTTGGGTTTTTGGAGTCATATTTTTATTTGTGACTTGCTTGTAGAGACGATTTTTATTTAATTTCATTTAATTTTTAAATGTCCTTTAATAGTGAGTGAGCCGTTTATCTGAGTAAAGGGCACTGTTTTTTCTTTTCTTTTCTTTTGTTCTGTTGCTGTACTTTGTTTTTATTTTAAATCCTTTGTCTTATTTTTGGTGTATAATAATGTTCCACTTGTTGAGTTATTATC</gDNA_template>
            <first_frame> L  C  *  H  T  P  *  L  P  Y  T  S  S  S  S  L  S  L  P  F  P  F  M  H  T  T  S  L  K  F  *  T  S  S  R  S  T  V  Y  S  T  V  I  S  H  K  L  N  S  P  T  R  L  T  A  V  K  L  L  P  F  *  L  C  L  M  E  L  C  L  L  *  S  T  N  I  H  F  P  S  S  K  M  S  S  L  F  M  F  C  L  I  T  L  T  V  L  N  F  I  R  S  P  T  V  L  R  L  P  L  L  F  T  K  L  P  A  M  L  M  E  T  *  V  L  L  T  L  P  I  L  K  V  V  K  *  V  L  V  Q  L  F  R  T  H  H  W  R  L  H  I  L  N  L  *  S  K  S  S  I  I  S  L  C  W  K  L  V  L  R  L  L  L  R  V  F  *  R  H  R  R  H  L  V  I  L  I  L  L  V  H  W  R  K  L  G  V  K  H  L  L  H  Y  L  S  N  L  E  F  S  R  R  I  K  L  L  L  R  R  V  *  L  F  L  P  Q  M  M  R  R  L  R  E  L  K  F  Q  I  *  A  I  S  V  A  L  M  L  F  R  C  C  S  T  M  L  F  R  V  T  L  L  L  E  P  *  K  R  R  R  I  R  F  Q  L  *  L  L  M  A  L  A  S  M  I  W  Q  F  Q  Q  K  V  T  R  *  H  L  T  Q  V  S  I  R  P  E  S  L  P  Q  S  L  T  L  L  P  S  A  F  S  P  S  T  V  C  F  Y  L  W  N  C  T  E  K  L  H  P  Q  H  Q  D  Q  L  R  R  L  L  Q  H  Q  H  Q  P  L  L  R  K  P  A  L  L  L  Q  *  C  L  L  L  L  H  R  L  H  L  Q  L  V  L  R  R  I  V  P  L  Q  I  R  R  T  V  R  R  R  R  T  P  V  T  L  T  L  R  R  Y  *  K  L  Y  S  Q  C  Q  F  R  *  L  C  P  F  I  C  P  K  P  P  F  S  V  C  L  I  K  F  G  F  L  E  S  Y  F  Y  L  *  L  A  C  R  D  D  F  Y  L  I  S  F  N  F  *  M  S  F  N  S  E  *  A  V  Y  L  S  K  G  H  C  F  F  F  S  F  L  L  F  C  C  C  T  L  F  L  F  *  I  L  C  L  I  F  G  V  *  *  C  S  T  C  *  V  I  I </first_frame>
            <second_frame>  F  A  N  I  H  H  D  Y  P  T  L  L  P  L  H  S  P  Y  R  F  R  S  C  T  Q  H  H  *  N  F  E  Q  V  P  G  V  Q  C  I  Q  Q  L  S  L  T  N  *  T  R  R  R  D  *  Q  P  *  N  Y  Y  R  F  S  F  A  *  W  S  Y  V  C  Y  S  R  Q  T  S  T  F  R  H  Q  K  C  P  L  S  S  C  F  A  *  L  L  *  R  Y  *  T  S  *  D  L  R  R  Y  Y  D  F  H  Y  S  L  P  N  Y  R  Q  C  S  W  K  H  R  F  C  *  H  Y  R  S  *  R  W  *  S  R  F  W  F  S  Y  S  E  L  T  I  G  V  Y  I  Y  *  I  C  E  A  N  P  V  *  Y  L  C  V  G  S  *  C  S  D  Y  C  S  G  Y  F  D  G  T  G  A  I  W  *  F  *  Y  Y  W  C  I  G  E  S  W  V  *  N  I  C  F  I  T  C  Q  I  W  S  S  Q  D  V  S  N  C  Y  *  E  G  F  D  Y  F  C  P  K  *  *  G  V  *  G  S  *  S  S  R  S  E  R  S  Q  *  R  *  C  C  F  V  V  A  V  P  C  Y  S  E  L  H  S  Y  W  N  L  E  N  D  E  G  S  D  F  N  S  S  Y  *  W  R  *  Q  V  *  S  G  S  F  N  R  R  *  P  G  D  T  *  H  R  C  R  F  V  Q  N  R  F  H  S  H  *  L  Y  S  L  L  H  F  H  R  R  Q  C  A  S  T  C  G  I  V  R  K  S  S  I  P  S  T  R  T  S  S  G  D  F  S  N  T  S  T  S  P  C  S  G  S  Q  L  S  Y  S  N  D  V  S  S  C  S  T  D  F  I  S  S  W  F  S  G  G  *  S  H  C  R  F  G  E  Q  Y  G  E  E  E  R  R  *  R  *  H  S  G  A  T  E  S  S  T  H  S  V  S  F  G  N  C  V  R  L  F  V  L  N  R  H  F  P  F  V  *  L  N  L  G  F  W  S  H  I  F  I  C  D  L  L  V  E  T  I  F  I  *  F  H  L  I  F  K  C  P  L  I  V  S  E  P  F  I  *  V  K  G  T  V  F  S  F  L  F  F  C  S  V  A  V  L  C  F  Y  F  K  S  F  V  L  F  L  V  Y  N  N  V  P  L  V  E  L  L   </second_frame>
            <third_frame>   L  L  T  Y  T  M  T  T  L  H  F  F  L  F  T  L  L  T  V  S  V  H  A  H  N  I  T  E  I  L  N  K  F  P  E  Y  S  V  F  N  S  Y  L  S  Q  T  K  L  A  D  E  I  N  S  R  E  T  I  T  V  L  A  L  P  N  G  A  M  S  A  I  V  D  K  H  P  L  S  V  I  K  N  V  L  S  L  H  V  L  L  D  Y  F  D  G  T  K  L  H  K  I  S  D  G  T  T  T  S  T  T  L  Y  Q  T  T  G  N  A  H  G  N  I  G  S  V  N  I  T  D  L  K  G  G  K  V  G  F  G  S  A  I  P  N  S  P  L  A  S  T  Y  T  K  S  V  K  Q  I  Q  Y  N  I  S  V  L  E  V  S  A  P  I  I  A  P  G  I  L  T  A  P  A  P  S  G  D  F  N  I  T  G  A  L  E  K  A  G  C  K  T  F  A  S  L  L  V  K  S  G  V  L  K  T  Y  Q  T  A  I  E  K  G  L  T  I  F  A  P  N  D  E  A  F  K  G  A  K  V  P  D  L  S  D  L  S  S  A  D  V  V  S  L  L  Q  Y  H  A  I  P  S  Y  T  P  I  G  T  L  K  T  T  K  D  P  I  S  T  L  A  T  N  G  A  S  K  Y  D  L  A  V  S  T  E  G  D  Q  V  T  L  D  T  G  V  D  S  S  R  I  A  S  T  V  I  D  S  T  P  F  C  I  F  T  V  D  S  V  L  L  P  V  E  L  Y  G  K  A  P  S  P  A  P  G  P  A  P  E  T  S  P  T  P  A  P  A  P  A  P  E  A  S  S  P  T  P  M  M  S  P  P  A  P  P  T  S  S  P  A  G  S  P  A  D  S  P  T  A  D  S  E  N  S  T  A  K  K  N  A  G  N  V  N  T  P  A  L  L  K  A  L  L  T  V  S  V  S  V  I  V  S  V  Y  L  S  *  T  A  I  F  R  L  F  N  *  I  W  V  F  G  V  I  F  L  F  V  T  C  L  *  R  R  F  L  F  N  F  I  *  F  L  N  V  L  *  *  *  V  S  R  L  S  E  *  R  A  L  F  F  L  F  F  S  F  V  L  L  L  Y  F  V  F  I  L  N  P  L  S  Y  F  W  C  I  I  M  F  H  L  L  S  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13386" stop="12127"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1257</number_coding_nucleotides>
                  <number_encoded_amino_acids>419</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLTYTMTTLHFFLFTLLTVSVHAHNITEILNKFPEYSVFNSYLSQTKLADEINSRETITVLALPNGAMSAIVDKHPLSVIKNVLSLHVLLDYFDGTKLHKISDGTTTSTTLYQTTGNAHGNIGSVNITDLKGGKVGFGSAIPNSPLASTYTKSVKQIQYNISVLEVSAPIIAPGILTAPAPSGDFNITGALEKAGCKTFASLLVKSGVLKTYQTAIEKGLTIFAPNDEAFKGAKVPDLSDLSSADVVSLLQYHAIPSYTPIGTLKTTKDPISTLATNGASKYDLAVSTEGDQVTLDTGVDSSRIASTVIDSTPFCIFTVDSVLLPVELYGKAPSPAPGPAPETSPTPAPAPAPEASSPTPMMSPPAPPTSSPAGSPADSPTADSENSTAKKNAGNVNTPALLKALLTVSVSVIVSVYLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="13364" e_stop="12717"/>
            <exon e_start="12338" e_stop="12045"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="13364" e_stop="12717" e_length="648"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12716" i_stop="12339" i_length="378"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="12338" e_stop="12045" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13364" stop="12717"/>
              <exon start="12338" stop="12045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593256" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTACACTTCTTCCTCTTCACTCTCCTTACCGTTTCCGTTCATGCACACAACATCACTGAAATTTTGAACAAGTTCCCGGAGTACAGTGTATTCAACAGTTATCTCTCACAAACTAAACTCGCCGACGAGATTAACAGCCGTGAAACTATTACCGTTTTAGCTTTGCCTAATGGAGCTATGTCTGCTATAGTCGACAAACATCCACTTTCCGTCATCAAAAATGTCCTCTCTCTTCATGTTTTGCTTGATTACTTTGACGGTACTAAACTTCATAAGATCTCCGACGGTACTACGACTTCCACTACTCTTTACCAAACTACCGGCAATGCTCATGGAAACATAGGTTCTGTTAACATTACCGATCTTAAAGGTGGTAAAGTAGGTTTTGGTTCAGCTATTCCGAACTCACCATTGGCGTCTACATATACTAAATCTGTGAAGCAAATCCAGTATAATATCTCTGTGTTGGAAGTTAGTGCTCCGATTATTGCTCCGGGTATTTTGACGGCACCGGCGCCATCTGGTGATTTTAATATTACTGGTGCATTGGAGAAAGCTGGGTGTAAAACATTTGCTTCATTACTTGTCAAATCTGGAGTTCTCAAGACGTATCAAACTGCTATTGAGAAGGGTTTGACTATTTTTG : CCCCTGCTCCGGAAGCCAGCTCTCCTACTCCAATGATGTCTCCTCCTGCTCCACCGACTTCATCTCCAGCTGGTTCTCCGGCGGATAGTCCCACTGCAGATTCGGAGAACAGTACGGCGAAGAAGAACGCCGGTAACGTTAACACTCCGGCGCTACTGAAAGCTCTACTCACAGTGTCAGTTTCGGTAATTGTGTCCGTTTATTTGTCCTAAACCGCCATTTTCCGTTTGTTTAATTAAATTTGGGTTTTTGGAGTCATATTTTTATTTGTGACTTGCTTGTAGAGACGATTTT</gDNA_template>
            <first_frame> P  Y  T  S  S  S  S  L  S  L  P  F  P  F  M  H  T  T  S  L  K  F  *  T  S  S  R  S  T  V  Y  S  T  V  I  S  H  K  L  N  S  P  T  R  L  T  A  V  K  L  L  P  F  *  L  C  L  M  E  L  C  L  L  *  S  T  N  I  H  F  P  S  S  K  M  S  S  L  F  M  F  C  L  I  T  L  T  V  L  N  F  I  R  S  P  T  V  L  R  L  P  L  L  F  T  K  L  P  A  M  L  M  E  T  *  V  L  L  T  L  P  I  L  K  V  V  K  *  V  L  V  Q  L  F  R  T  H  H  W  R  L  H  I  L  N  L  *  S  K  S  S  I  I  S  L  C  W  K  L  V  L  R  L  L  L  R  V  F  *  R  H  R  R  H  L  V  I  L  I  L  L  V  H  W  R  K  L  G  V  K  H  L  L  H  Y  L  S  N  L  E  F  S  R  R  I  K  L  L  L  R  R  V  *  L  F  L  :  P  L  L  R  K  P  A  L  L  L  Q  *  C  L  L  L  L  H  R  L  H  L  Q  L  V  L  R  R  I  V  P  L  Q  I  R  R  T  V  R  R  R  R  T  P  V  T  L  T  L  R  R  Y  *  K  L  Y  S  Q  C  Q  F  R  *  L  C  P  F  I  C  P  K  P  P  F  S  V  C  L  I  K  F  G  F  L  E  S  Y  F  Y  L  *  L  A  C  R  D  D  F </first_frame>
            <second_frame>  P  T  L  L  P  L  H  S  P  Y  R  F  R  S  C  T  Q  H  H  *  N  F  E  Q  V  P  G  V  Q  C  I  Q  Q  L  S  L  T  N  *  T  R  R  R  D  *  Q  P  *  N  Y  Y  R  F  S  F  A  *  W  S  Y  V  C  Y  S  R  Q  T  S  T  F  R  H  Q  K  C  P  L  S  S  C  F  A  *  L  L  *  R  Y  *  T  S  *  D  L  R  R  Y  Y  D  F  H  Y  S  L  P  N  Y  R  Q  C  S  W  K  H  R  F  C  *  H  Y  R  S  *  R  W  *  S  R  F  W  F  S  Y  S  E  L  T  I  G  V  Y  I  Y  *  I  C  E  A  N  P  V  *  Y  L  C  V  G  S  *  C  S  D  Y  C  S  G  Y  F  D  G  T  G  A  I  W  *  F  *  Y  Y  W  C  I  G  E  S  W  V  *  N  I  C  F  I  T  C  Q  I  W  S  S  Q  D  V  S  N  C  Y  *  E  G  F  D  Y  F  C :   P  C  S  G  S  Q  L  S  Y  S  N  D  V  S  S  C  S  T  D  F  I  S  S  W  F  S  G  G  *  S  H  C  R  F  G  E  Q  Y  G  E  E  E  R  R  *  R  *  H  S  G  A  T  E  S  S  T  H  S  V  S  F  G  N  C  V  R  L  F  V  L  N  R  H  F  P  F  V  *  L  N  L  G  F  W  S  H  I  F  I  C  D  L  L  V  E  T  I   </second_frame>
            <third_frame>   L  H  F  F  L  F  T  L  L  T  V  S  V  H  A  H  N  I  T  E  I  L  N  K  F  P  E  Y  S  V  F  N  S  Y  L  S  Q  T  K  L  A  D  E  I  N  S  R  E  T  I  T  V  L  A  L  P  N  G  A  M  S  A  I  V  D  K  H  P  L  S  V  I  K  N  V  L  S  L  H  V  L  L  D  Y  F  D  G  T  K  L  H  K  I  S  D  G  T  T  T  S  T  T  L  Y  Q  T  T  G  N  A  H  G  N  I  G  S  V  N  I  T  D  L  K  G  G  K  V  G  F  G  S  A  I  P  N  S  P  L  A  S  T  Y  T  K  S  V  K  Q  I  Q  Y  N  I  S  V  L  E  V  S  A  P  I  I  A  P  G  I  L  T  A  P  A  P  S  G  D  F  N  I  T  G  A  L  E  K  A  G  C  K  T  F  A  S  L  L  V  K  S  G  V  L  K  T  Y  Q  T  A  I  E  K  G  L  T  I  F   : A  P  A  P  E  A  S  S  P  T  P  M  M  S  P  P  A  P  P  T  S  S  P  A  G  S  P  A  D  S  P  T  A  D  S  E  N  S  T  A  K  K  N  A  G  N  V  N  T  P  A  L  L  K  A  L  L  T  V  S  V  S  V  I  V  S  V  Y  L  S  *  T  A  I  F  R  L  F  N  *  I  W  V  F  G  V  I  F  L  F  V  T  C  L  *  R  R  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13362" stop="12717"/>
                    <exon start="12338" stop="12127"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHFFLFTLLTVSVHAHNITEILNKFPEYSVFNSYLSQTKLADEINSRETITVLALPNGAMSAIVDKHPLSVIKNVLSLHVLLDYFDGTKLHKISDGTTTSTTLYQTTGNAHGNIGSVNITDLKGGKVGFGSAIPNSPLASTYTKSVKQIQYNISVLEVSAPIIAPGILTAPAPSGDFNITGALEKAGCKTFASLLVKSGVLKTYQTAIEKGLTIFAPAPEASSPTPMMSPPAPPTSSPAGSPADSPTADSENSTAKKNAGNVNTPALLKALLTVSVSVIVSVYLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="29494" PGL_stop="30966"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29494" e_stop="29734"/>
            <exon e_start="30485" e_stop="30966"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29494" e_stop="29734" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29735" i_stop="30484" i_length="750"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="30485" e_stop="30966" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29494" stop="29734"/>
              <exon start="30485" stop="30966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTGCTCAGCCCCAACTCGTATGGAGAACAAAAACAGTGTCATCTCCGAAAAATTGTCTGCAGAATCTATTTCTAAGTTCAATAGATTCCTCAAAGGCATGGGGGTCTTCAACCTTAACTTTCCTCCTCAGTATGACACTAAGGATTCTTTCTCTGAACTCAGCCGCAGCCTCCTCAAGGTTCAACATATCCACCGTGGCAAGATTTCATGTATTGTCTCTGTCAAACCTCCTATCATG : AATATCTATGGTTCATTGCACGGAGGAGCAGGTGGAGATGTAGCAGTAAGGGTAGCAACTGCCTGTGCTCGAACTATCGTGGGAAAGGATAAAGAGCTCTTTCTAGGAGAATTAAGCATATCTTATCTCTCTAGTGCTCCTGAAAATGTGAGTCTTTAAGGCATTTGTTTTGTTCTCAGCATTCTCCGTGTTAATGCGTTGCTTGCAGTTTAAGCATCAAGGAAGAGCATGTCAAGATTTGGGTGGTCTTTTTTCTTTTCACCTGCTACAGTGCTGAGCGTGTGTGAATTTTCTTACAGTTTTATAAATACTGCATAGATGTTTATTTGTTTAACAGCAGACGCGACAAACGCATATGGAATTATAAGATGAGAAAGTCATAGAACTAACCTAGACTTGCAAAGTAGGAACACAGCCGTCATGTTGAATTGTCTTGTTTTGACCATGCTACTCTCTCCATTTCATATTACTTGGCCCCTGTT</gDNA_template>
            <first_frame> K  L  L  S  P  N  S  Y  G  E  Q  K  Q  C  H  L  R  K  I  V  C  R  I  Y  F  *  V  Q  *  I  P  Q  R  H  G  G  L  Q  P  *  L  S  S  S  V  *  H  *  G  F  F  L  *  T  Q  P  Q  P  P  Q  G  S  T  Y  P  P  W  Q  D  F  M  Y  C  L  C  Q  T  S  Y  H   : E  Y  L  W  F  I  A  R  R  S  R  W  R  C  S  S  K  G  S  N  C  L  C  S  N  Y  R  G  K  G  *  R  A  L  S  R  R  I  K  H  I  L  S  L  *  C  S  *  K  C  E  S  L  R  H  L  F  C  S  Q  H  S  P  C  *  C  V  A  C  S  L  S  I  K  E  E  H  V  K  I  W  V  V  F  F  L  F  T  C  Y  S  A  E  R  V  *  I  F  L  Q  F  Y  K  Y  C  I  D  V  Y  L  F  N  S  R  R  D  K  R  I  W  N  Y  K  M  R  K  S  *  N  *  P  R  L  A  K  *  E  H  S  R  H  V  E  L  S  C  F  D  H  A  T  L  S  I  S  Y  Y  L  A  P  V </first_frame>
            <second_frame>  N  C  S  A  P  T  R  M  E  N  K  N  S  V  I  S  E  K  L  S  A  E  S  I  S  K  F  N  R  F  L  K  G  M  G  V  F  N  L  N  F  P  P  Q  Y  D  T  K  D  S  F  S  E  L  S  R  S  L  L  K  V  Q  H  I  H  R  G  K  I  S  C  I  V  S  V  K  P  P  I  M  :  N  I  Y  G  S  L  H  G  G  A  G  G  D  V  A  V  R  V  A  T  A  C  A  R  T  I  V  G  K  D  K  E  L  F  L  G  E  L  S  I  S  Y  L  S  S  A  P  E  N  V  S  L  *  G  I  C  F  V  L  S  I  L  R  V  N  A  L  L  A  V  *  A  S  R  K  S  M  S  R  F  G  W  S  F  F  F  S  P  A  T  V  L  S  V  C  E  F  S  Y  S  F  I  N  T  A  *  M  F  I  C  L  T  A  D  A  T  N  A  Y  G  I  I  R  *  E  S  H  R  T  N  L  D  L  Q  S  R  N  T  A  V  M  L  N  C  L  V  L  T  M  L  L  S  P  F  H  I  T  W  P  L   </second_frame>
            <third_frame>   I  A  Q  P  Q  L  V  W  R  T  K  T  V  S  S  P  K  N  C  L  Q  N  L  F  L  S  S  I  D  S  S  K  A  W  G  S  S  T  L  T  F  L  L  S  M  T  L  R  I  L  S  L  N  S  A  A  A  S  S  R  F  N  I  S  T  V  A  R  F  H  V  L  S  L  S  N  L  L  S  * :   I  S  M  V  H  C  T  E  E  Q  V  E  M  *  Q  *  G  *  Q  L  P  V  L  E  L  S  W  E  R  I  K  S  S  F  *  E  N  *  A  Y  L  I  S  L  V  L  L  K  M  *  V  F  K  A  F  V  L  F  S  A  F  S  V  L  M  R  C  L  Q  F  K  H  Q  G  R  A  C  Q  D  L  G  G  L  F  S  F  H  L  L  Q  C  *  A  C  V  N  F  L  T  V  L  *  I  L  H  R  C  L  F  V  *  Q  Q  T  R  Q  T  H  M  E  L  *  D  E  K  V  I  E  L  T  *  T  C  K  V  G  T  Q  P  S  C  *  I  V  L  F  *  P  C  Y  S  L  H  F  I  L  L  G  P  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29495" stop="29734"/>
                    <exon start="30485" stop="30643"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NCSAPTRMENKNSVISEKLSAESISKFNRFLKGMGVFNLNFPPQYDTKDSFSELSRSLLKVQHIHRGKISCIVSVKPPIMNIYGSLHGGAGGDVAVRVATACARTIVGKDKELFLGELSISYLSSAPENVSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="35030" PGL_stop="36101"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35030" e_stop="35311"/>
            <exon e_start="35418" e_stop="35564"/>
            <exon e_start="35711" e_stop="36101"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.506" e_score="1.000"/>
          <exon-intron don_prob="0.717" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35030" e_stop="35311" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.506">
            <gDNA_intron_boundary i_start="35312" i_stop="35417" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35418" e_stop="35564" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.717" acc_prob="0.992">
            <gDNA_intron_boundary i_start="35565" i_stop="35710" i_length="146"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35711" e_stop="36101" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35030" stop="35311"/>
              <exon start="35418" stop="35564"/>
              <exon start="35711" stop="36101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581889" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAGCAAATTGCTTAGGTATATAGAGTTGAACCTTTGGTAGATGGGGGAAGAGAGTTCGAAATCGAAGAGTTCATTCACCAAAGACACAATCATCTCCGAAGATTTATCTGAGGAAGCCGCTTTCTTGGCGGATCGTCTCCTCAGCCGCGTGCAACTCCACGGGGACAAGTTTCCGGCCGGATATGAATCTTTCTCTGAACTCACTCGCGGCTGTCTCAAGGTCCACAGCATCCATCCTGGCAAAGTCTCCTGCATTTTATCTGTCAAATCTGCAATCTCG : AATATTTATGGTAGCATGCATGGAGGAGCAGTTGGAGCTGTCGCAGAGACGGTGTCAATTGCCTGTGCTAGAACTGTTGTAGGAAAGGATAAGAAGCTCTTTCTTGGAGAATTGAGAATGTCGTATCTTTCTACTGCTAAAAGCAAT : GCAGAGGTGATCGTAGATGGGTCTATTATTAAGAGTGGAAGGAGCACAACTGTAGTTGCAACTGATTTTCAGCTCAAGGACTCGAAGAAATTGGTCTACTCCTCGAGTGCAACATTCTATCACATGCCCATCGCAAGTTTATGAACTCAACTCAACACATTTGCTAAACCTGTTCAGCAGATCCAGCTCATGTACAATTGCAGATCATTGATATAATCTCGAGTGTCGTATCTGCCATCACCATATCAATATCTCGTATTATCTGAAATTCCCTTATTTGTCTTCTGTTTCGTCTTTGTAACTGAAGTGTTGCTTGATGAAGTACACAATTGAACCATGATATATTGAAAGAGAAAATCATGCAAATCAATCTTGTATTAGCTGTGTGTCC</gDNA_template>
            <first_frame> D  S  K  L  L  R  Y  I  E  L  N  L  W  *  M  G  E  E  S  S  K  S  K  S  S  F  T  K  D  T  I  I  S  E  D  L  S  E  E  A  A  F  L  A  D  R  L  L  S  R  V  Q  L  H  G  D  K  F  P  A  G  Y  E  S  F  S  E  L  T  R  G  C  L  K  V  H  S  I  H  P  G  K  V  S  C  I  L  S  V  K  S  A  I  S  :  N  I  Y  G  S  M  H  G  G  A  V  G  A  V  A  E  T  V  S  I  A  C  A  R  T  V  V  G  K  D  K  K  L  F  L  G  E  L  R  M  S  Y  L  S  T  A  K  S  N  :  A  E  V  I  V  D  G  S  I  I  K  S  G  R  S  T  T  V  V  A  T  D  F  Q  L  K  D  S  K  K  L  V  Y  S  S  S  A  T  F  Y  H  M  P  I  A  S  L  *  T  Q  L  N  T  F  A  K  P  V  Q  Q  I  Q  L  M  Y  N  C  R  S  L  I  *  S  R  V  S  Y  L  P  S  P  Y  Q  Y  L  V  L  S  E  I  P  L  F  V  F  C  F  V  F  V  T  E  V  L  L  D  E  V  H  N  *  T  M  I  Y  *  K  R  K  S  C  K  S  I  L  Y  *  L  C  V  </first_frame>
            <second_frame>  I  A  N  C  L  G  I  *  S  *  T  F  G  R  W  G  K  R  V  R  N  R  R  V  H  S  P  K  T  Q  S  S  P  K  I  Y  L  R  K  P  L  S  W  R  I  V  S  S  A  A  C  N  S  T  G  T  S  F  R  P  D  M  N  L  S  L  N  S  L  A  A  V  S  R  S  T  A  S  I  L  A  K  S  P  A  F  Y  L  S  N  L  Q  S  R :   I  F  M  V  A  C  M  E  E  Q  L  E  L  S  Q  R  R  C  Q  L  P  V  L  E  L  L  *  E  R  I  R  S  S  F  L  E  N  *  E  C  R  I  F  L  L  L  K  A  M :   Q  R  *  S  *  M  G  L  L  L  R  V  E  G  A  Q  L  *  L  Q  L  I  F  S  S  R  T  R  R  N  W  S  T  P  R  V  Q  H  S  I  T  C  P  S  Q  V  Y  E  L  N  S  T  H  L  L  N  L  F  S  R  S  S  S  C  T  I  A  D  H  *  Y  N  L  E  C  R  I  C  H  H  H  I  N  I  S  Y  Y  L  K  F  P  Y  L  S  S  V  S  S  L  *  L  K  C  C  L  M  K  Y  T  I  E  P  *  Y  I  E  R  E  N  H  A  N  Q  S  C  I  S  C  V  S </second_frame>
            <third_frame>   *  Q  I  A  *  V  Y  R  V  E  P  L  V  D  G  G  R  E  F  E  I  E  E  F  I  H  Q  R  H  N  H  L  R  R  F  I  *  G  S  R  F  L  G  G  S  S  P  Q  P  R  A  T  P  R  G  Q  V  S  G  R  I  *  I  F  L  *  T  H  S  R  L  S  Q  G  P  Q  H  P  S  W  Q  S  L  L  H  F  I  C  Q  I  C  N  L   : E  Y  L  W  *  H  A  W  R  S  S  W  S  C  R  R  D  G  V  N  C  L  C  *  N  C  C  R  K  G  *  E  A  L  S  W  R  I  E  N  V  V  S  F  Y  C  *  K  Q   : C  R  G  D  R  R  W  V  Y  Y  *  E  W  K  E  H  N  C  S  C  N  *  F  S  A  Q  G  L  E  E  I  G  L  L  L  E  C  N  I  L  S  H  A  H  R  K  F  M  N  S  T  Q  H  I  C  *  T  C  S  A  D  P  A  H  V  Q  L  Q  I  I  D  I  I  S  S  V  V  S  A  I  T  I  S  I  S  R  I  I  *  N  S  L  I  C  L  L  F  R  L  C  N  *  S  V  A  *  *  S  T  Q  L  N  H  D  I  L  K  E  K  I  M  Q  I  N  L  V  L  A  V  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35072" stop="35311"/>
                    <exon start="35418" stop="35564"/>
                    <exon start="35711" stop="35854"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGEESSKSKSSFTKDTIISEDLSEEAAFLADRLLSRVQLHGDKFPAGYESFSELTRGCLKVHSIHPGKVSCILSVKSAISNIYGSMHGGAVGAVAETVSIACARTVVGKDKKLFLGELRMSYLSTAKSNAEVIVDGSIIKSGRSTTVVATDFQLKDSKKLVYSSSATFYHMPIASL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35041" e_stop="35311"/>
            <exon e_start="35418" e_stop="36029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.506" e_score="0.996"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="35041" e_stop="35311" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.506">
            <gDNA_intron_boundary i_start="35312" i_stop="35417" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="35418" e_stop="36029" e_length="612"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35041" stop="35311"/>
              <exon start="35418" stop="36029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTAGGTATATAGAGTTGAACCTTTGGTAGATGGGGGAAGAGAGTTCGAAATCGAAGAGTTCATTCACCAAAGACACAATCATCTCCGAAGATTTATCTGAGGAAGCCGCTTTCTTGGCGGATCGTCTCCTCAGCCGCGTGCAACTCCACGGGGACAAGTTTCCGGCCGGATATGAATCTTTCTCTGAACTCACTCGCGGCTGTCTCAAGGTCCACAGCATCCATCCTGGCAAAGTCTCCTGCATTTTATCTGTCAAATCTGCAATCTCG : AATATTTATGGTAGCATGCATGGAGGAGCAGTTGGAGCTGTCGCAGAGACGGTGTCAATTGCCTGTGCTAGAACTGTTGTAGGAAAGGATAAGAAGCTCTTTCTTGGAGAATTGAGAATGTCGTATCTTTCTACTGCTAAAAGCAATGTGAGTATTAAAGTTTTCATATAAGCTCCCTTTACCTCAATAGAACTACAACTTATTGTATAGTAACAATTTGGTAAAGACCAAATGCACATCATAAAAGGGTCTCTTTCCTATTTATTTGCTTTTGTATTTGTGTCCCACTCTAGGCAGAGGTGATCGTAGATGGGTCTATTATTAAGAGTGGAAGGAGCACAACTGTAGTTGCAACTGATTTTCAGCTCAAGGACTCGAAGAAATTGGTCTACTCCTCGAGTGCAACATTCTATCACATGCCCATCGCAAGTTTATGAACTCAACTCAACACATTTGCTAAACCTGTTCAGCAGATCCAGCTCATGTACAATTGCAGATCATTGATATAATCTCGAGTGTCGTATCTGCCATCACCATATCAATATCTCGTATTATCTGAAATTCCCTTATTTGTCTTCTGTTTCGTCTTTGTAACTGAAGTGTTGCTTGATG</gDNA_template>
            <first_frame> A  *  V  Y  R  V  E  P  L  V  D  G  G  R  E  F  E  I  E  E  F  I  H  Q  R  H  N  H  L  R  R  F  I  *  G  S  R  F  L  G  G  S  S  P  Q  P  R  A  T  P  R  G  Q  V  S  G  R  I  *  I  F  L  *  T  H  S  R  L  S  Q  G  P  Q  H  P  S  W  Q  S  L  L  H  F  I  C  Q  I  C  N  L   : E  Y  L  W  *  H  A  W  R  S  S  W  S  C  R  R  D  G  V  N  C  L  C  *  N  C  C  R  K  G  *  E  A  L  S  W  R  I  E  N  V  V  S  F  Y  C  *  K  Q  C  E  Y  *  S  F  H  I  S  S  L  Y  L  N  R  T  T  T  Y  C  I  V  T  I  W  *  R  P  N  A  H  H  K  R  V  S  F  L  F  I  C  F  C  I  C  V  P  L  *  A  E  V  I  V  D  G  S  I  I  K  S  G  R  S  T  T  V  V  A  T  D  F  Q  L  K  D  S  K  K  L  V  Y  S  S  S  A  T  F  Y  H  M  P  I  A  S  L  *  T  Q  L  N  T  F  A  K  P  V  Q  Q  I  Q  L  M  Y  N  C  R  S  L  I  *  S  R  V  S  Y  L  P  S  P  Y  Q  Y  L  V  L  S  E  I  P  L  F  V  F  C  F  V  F  V  T  E  V  L  L  D  </first_frame>
            <second_frame>  L  R  Y  I  E  L  N  L  W  *  M  G  E  E  S  S  K  S  K  S  S  F  T  K  D  T  I  I  S  E  D  L  S  E  E  A  A  F  L  A  D  R  L  L  S  R  V  Q  L  H  G  D  K  F  P  A  G  Y  E  S  F  S  E  L  T  R  G  C  L  K  V  H  S  I  H  P  G  K  V  S  C  I  L  S  V  K  S  A  I  S  :  N  I  Y  G  S  M  H  G  G  A  V  G  A  V  A  E  T  V  S  I  A  C  A  R  T  V  V  G  K  D  K  K  L  F  L  G  E  L  R  M  S  Y  L  S  T  A  K  S  N  V  S  I  K  V  F  I  *  A  P  F  T  S  I  E  L  Q  L  I  V  *  *  Q  F  G  K  D  Q  M  H  I  I  K  G  S  L  S  Y  L  F  A  F  V  F  V  S  H  S  R  Q  R  *  S  *  M  G  L  L  L  R  V  E  G  A  Q  L  *  L  Q  L  I  F  S  S  R  T  R  R  N  W  S  T  P  R  V  Q  H  S  I  T  C  P  S  Q  V  Y  E  L  N  S  T  H  L  L  N  L  F  S  R  S  S  S  C  T  I  A  D  H  *  Y  N  L  E  C  R  I  C  H  H  H  I  N  I  S  Y  Y  L  K  F  P  Y  L  S  S  V  S  S  L  *  L  K  C  C  L  M </second_frame>
            <third_frame>   L  G  I  *  S  *  T  F  G  R  W  G  K  R  V  R  N  R  R  V  H  S  P  K  T  Q  S  S  P  K  I  Y  L  R  K  P  L  S  W  R  I  V  S  S  A  A  C  N  S  T  G  T  S  F  R  P  D  M  N  L  S  L  N  S  L  A  A  V  S  R  S  T  A  S  I  L  A  K  S  P  A  F  Y  L  S  N  L  Q  S  R :   I  F  M  V  A  C  M  E  E  Q  L  E  L  S  Q  R  R  C  Q  L  P  V  L  E  L  L  *  E  R  I  R  S  S  F  L  E  N  *  E  C  R  I  F  L  L  L  K  A  M  *  V  L  K  F  S  Y  K  L  P  L  P  Q  *  N  Y  N  L  L  Y  S  N  N  L  V  K  T  K  C  T  S  *  K  G  L  F  P  I  Y  L  L  L  Y  L  C  P  T  L  G  R  G  D  R  R  W  V  Y  Y  *  E  W  K  E  H  N  C  S  C  N  *  F  S  A  Q  G  L  E  E  I  G  L  L  L  E  C  N  I  L  S  H  A  H  R  K  F  M  N  S  T  Q  H  I  C  *  T  C  S  A  D  P  A  H  V  Q  L  Q  I  I  D  I  I  S  S  V  V  S  A  I  T  I  S  I  S  R  I  I  *  N  S  L  I  C  L  L  F  R  L  C  N  *  S  V  A  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35072" stop="35311"/>
                    <exon start="35418" stop="35588"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGEESSKSKSSFTKDTIISEDLSEEAAFLADRLLSRVQLHGDKFPAGYESFSELTRGCLKVHSIHPGKVSCILSVKSAISNIYGSMHGGAVGAVAETVSIACARTVVGKDKKLFLGELRMSYLSTAKSNVSIKVFI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35061" stop="35311"/>
                    <exon start="35418" stop="35499"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFGRWGKRVRNRRVHSPKTQSSPKIYLRKPLSWRIVSSAACNSTGTSFRPDMNLSLNSLAAVSRSTASILAKSPAFYLSNLQSRIFMVACMEEQLELSQRRCQLPVLELL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="41935" PGL_stop="36062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41935" e_stop="41524"/>
            <exon e_start="40773" e_stop="40669"/>
            <exon e_start="40439" e_stop="40366"/>
            <exon e_start="40270" e_stop="40212"/>
            <exon e_start="39914" e_stop="39877"/>
            <exon e_start="38777" e_stop="38657"/>
            <exon e_start="38569" e_stop="38501"/>
            <exon e_start="38417" e_stop="38335"/>
            <exon e_start="37642" e_stop="37574"/>
            <exon e_start="37484" e_stop="37422"/>
            <exon e_start="37296" e_stop="37148"/>
            <exon e_start="36389" e_stop="36062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.881" e_score="0.998"/>
          <exon-intron don_prob="0.967" acc_prob="0.770" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.358" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.193" acc_prob="0.269" e_score="1.000"/>
          <exon-intron don_prob="0.482" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.215" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="41935" e_stop="41524" e_length="412"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.881">
            <gDNA_intron_boundary i_start="41523" i_stop="40774" i_length="750"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40773" e_stop="40669" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.770">
            <gDNA_intron_boundary i_start="40668" i_stop="40440" i_length="229"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40439" e_stop="40366" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40365" i_stop="40271" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40270" e_stop="40212" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.993">
            <gDNA_intron_boundary i_start="40211" i_stop="39915" i_length="297"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39914" e_stop="39877" e_length="38"/>
          </exon>
          <intron i_serial="5" don_prob="0.358" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39876" i_stop="38778" i_length="1099"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38777" e_stop="38657" e_length="121"/>
          </exon>
          <intron i_serial="6" don_prob="0.193" acc_prob="0.269">
            <gDNA_intron_boundary i_start="38656" i_stop="38570" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38569" e_stop="38501" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.482" acc_prob="0.990">
            <gDNA_intron_boundary i_start="38500" i_stop="38418" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="38417" e_stop="38335" e_length="83"/>
          </exon>
          <intron i_serial="8" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="38334" i_stop="37643" i_length="692"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="37642" e_stop="37574" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="37573" i_stop="37485" i_length="89"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="37484" e_stop="37422" e_length="63"/>
          </exon>
          <intron i_serial="10" don_prob="0.983" acc_prob="0.980">
            <gDNA_intron_boundary i_start="37421" i_stop="37297" i_length="125"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="37296" e_stop="37148" e_length="149"/>
          </exon>
          <intron i_serial="11" don_prob="0.215" acc_prob="0.989">
            <gDNA_intron_boundary i_start="37147" i_stop="36390" i_length="758"/>
          </intron>
          <exon e_serial="12" e_score="0.988">
            <gDNA_exon_boundary e_start="36389" e_stop="36062" e_length="328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41935" stop="41524"/>
              <exon start="40773" stop="40669"/>
              <exon start="40439" stop="40366"/>
              <exon start="40270" stop="40212"/>
              <exon start="39914" stop="39877"/>
              <exon start="38777" stop="38657"/>
              <exon start="38569" stop="38501"/>
              <exon start="38417" stop="38335"/>
              <exon start="37642" stop="37574"/>
              <exon start="37484" stop="37422"/>
              <exon start="37296" stop="37148"/>
              <exon start="36389" stop="36062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41798" stop="41524"/>
              <exon start="40773" stop="40745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596404" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAACTAAAAGAGAGAAAAAAAAGAATGTTAAAGAGCAATAAAACGGCGTCGTGTGAAGCTGCATTATCTTCTCCATTGCTGCTTCTGAGCTGAACGAAATGGCTTCAACGTTATCTTCTCGTCTCCCACGTCTTCCTTCCAAAACGGTATTCCCACATTCTAACTCCGGTTCAACTCTCCTCCACTTCACATCCAAAACCCGGTTCGATCAGTCCCGGTTTAGATGCTCGGCGGGTCAAACGGGGTTCTTCACGAAGCTTGGTCGTTTGCTGAAAGAGAAAGCCAAGAGTGATGTGGAGAAACTGTTCTCAGGATTCTCAAAAACTCGAGACAATTTAGCTGTTATTGATGAACTCCTCCTTTACTGGAACCTTTCTGATACTGATCGTGTTCTTGATGAACTTGAAGAG : GTTCTGTTGGTCGCTGATTTTGGGCCGAAGATTACCATAAAGATTGTGGAGAGCTTGCGGGAGGATATATATGCAGGGAAAATCAAATCAGGAAGTGAGATAAAA : AGTGTTCTAAAGAAGAGTATCTTGGATCTATTGACTAGTAAAGCACCTAAAACAGAACTCAGTCTGGGCTTCAG : GAAACCAGCTGTAATCATGATTGTGGGTGTCAATGGAGGTGGGAAGACAACATCTCTTG : GAAAGTTGGCAAATAGGTTGAAGAGAGAAGGGGCAAAG : ATACTATTAGCAGCTGGTGATACATTTAGAGCAGCTGCTAGTGATCAGTTAGAAATCTGGGCTGAAAGGACTGGTTGTGAGATTGTTGTTGCTGAAAAAGAGAAAGCTAAGGCATCGTCAG : TTATTTCACAGGCTGTTAAAAGAGGAAAGGAAGAGGGTTTCGATATTGTTTTATGCGACACATCTGGCC : GTTTGCACACCAACTATAGCTTGATGGAGGAATTGGTGGCATGCAAAAAAGTTGTCAGTAAAATTGTTAATGGTGCACCTAAT : GAAATCTTGCTAGTACTGGATGGAACGACTGGTTTAAATATGCTTCCTCAAGCAAGAGAGTTTAATGAG : GTTGTTGGAATCACTGGGTTAATATTGACTAAACTTGATGGTTCTGCTCGAGGTGGCTGTGTG : GTCAGTGTGGTTGATGAGCTTGGTATTCCTGTAAAATTTGTAGGTGTTGGGGAAGGTGTAGATGACCTCCAACCATTCAATGCTGAGGAATTTGTTGATGCTATCTTCCCATGAGGCATGATTCAGTGACAGTTTCTCCTATATTCTAA : GTGAACTCTCTGGTGTTAACAAGACACAAACATTTTGGCGAGAGAGGAGTAATGAGACATTAGAAATTTTTGTCTTTAACAGAACGTGTGCCTTATGCTCCTTTGTTTATCTAGATCTGCTCTATTTCATTGAGGATGTGTCATCAGAAGAGACACTTAGTTGTCCAGTACGACTGATGCCATTAGTTGCATCGCCTTTTTTTAAAATCAAAAGATCAGTGTCATCTCCTTGTCATTGTTGCAGTATTAAGTAGTAATACAGCATTGTAGTTAAAGTGGAGTTTCATTGGACACACAGCTAATACAAGATTGATTTGCATGATTTTCT</gDNA_template>
            <first_frame> E  N  *  K  R  E  K  K  E  C  *  R  A  I  K  R  R  R  V  K  L  H  Y  L  L  H  C  C  F  *  A  E  R  N  G  F  N  V  I  F  S  S  P  T  S  S  F  Q  N  G  I  P  T  F  *  L  R  F  N  S  P  P  L  H  I  Q  N  P  V  R  S  V  P  V  *  M  L  G  G  S  N  G  V  L  H  E  A  W  S  F  A  E  R  E  S  Q  E  *  C  G  E  T  V  L  R  I  L  K  N  S  R  Q  F  S  C  Y  *  *  T  P  P  L  L  E  P  F  *  Y  *  S  C  S  *  *  T  *  R   : G  S  V  G  R  *  F  W  A  E  D  Y  H  K  D  C  G  E  L  A  G  G  Y  I  C  R  E  N  Q  I  R  K  *  D  K   : K  C  S  K  E  E  Y  L  G  S  I  D  *  *  S  T  *  N  R  T  Q  S  G  L  Q  :  E  T  S  C  N  H  D  C  G  C  Q  W  R  W  E  D  N  I  S  W :   K  V  G  K  *  V  E  E  R  R  G  K   : D  T  I  S  S  W  *  Y  I  *  S  S  C  *  *  S  V  R  N  L  G  *  K  D  W  L  *  D  C  C  C  *  K  R  E  S  *  G  I  V  S :   Y  F  T  G  C  *  K  R  K  G  R  G  F  R  Y  C  F  M  R  H  I  W  P :   F  A  H  Q  L  *  L  D  G  G  I  G  G  M  Q  K  S  C  Q  *  N  C  *  W  C  T  *   : *  N  L  A  S  T  G  W  N  D  W  F  K  Y  A  S  S  S  K  R  V  *  *   : G  C  W  N  H  W  V  N  I  D  *  T  *  W  F  C  S  R  W  L  C   : G  Q  C  G  *  *  A  W  Y  S  C  K  I  C  R  C  W  G  R  C  R  *  P  P  T  I  Q  C  *  G  I  C  *  C  Y  L  P  M  R  H  D  S  V  T  V  S  P  I  F  *  :  V  N  S  L  V  L  T  R  H  K  H  F  G  E  R  G  V  M  R  H  *  K  F  L  S  L  T  E  R  V  P  Y  A  P  L  F  I  *  I  C  S  I  S  L  R  M  C  H  Q  K  R  H  L  V  V  Q  Y  D  *  C  H  *  L  H  R  L  F  L  K  S  K  D  Q  C  H  L  L  V  I  V  A  V  L  S  S  N  T  A  L  *  L  K  W  S  F  I  G  H  T  A  N  T  R  L  I  C  M  I  F  </first_frame>
            <second_frame>  K  T  K  R  E  K  K  K  N  V  K  E  Q  *  N  G  V  V  *  S  C  I  I  F  S  I  A  A  S  E  L  N  E  M  A  S  T  L  S  S  R  L  P  R  L  P  S  K  T  V  F  P  H  S  N  S  G  S  T  L  L  H  F  T  S  K  T  R  F  D  Q  S  R  F  R  C  S  A  G  Q  T  G  F  F  T  K  L  G  R  L  L  K  E  K  A  K  S  D  V  E  K  L  F  S  G  F  S  K  T  R  D  N  L  A  V  I  D  E  L  L  L  Y  W  N  L  S  D  T  D  R  V  L  D  E  L  E  E  :  V  L  L  V  A  D  F  G  P  K  I  T  I  K  I  V  E  S  L  R  E  D  I  Y  A  G  K  I  K  S  G  S  E  I  K  :  S  V  L  K  K  S  I  L  D  L  L  T  S  K  A  P  K  T  E  L  S  L  G  F  R :   K  P  A  V  I  M  I  V  G  V  N  G  G  G  K  T  T  S  L   : G  K  L  A  N  R  L  K  R  E  G  A  K  :  I  L  L  A  A  G  D  T  F  R  A  A  A  S  D  Q  L  E  I  W  A  E  R  T  G  C  E  I  V  V  A  E  K  E  K  A  K  A  S  S   : V  I  S  Q  A  V  K  R  G  K  E  E  G  F  D  I  V  L  C  D  T  S  G   : R  L  H  T  N  Y  S  L  M  E  E  L  V  A  C  K  K  V  V  S  K  I  V  N  G  A  P  N  :  E  I  L  L  V  L  D  G  T  T  G  L  N  M  L  P  Q  A  R  E  F  N  E  :  V  V  G  I  T  G  L  I  L  T  K  L  D  G  S  A  R  G  G  C  V  :  V  S  V  V  D  E  L  G  I  P  V  K  F  V  G  V  G  E  G  V  D  D  L  Q  P  F  N  A  E  E  F  V  D  A  I  F  P  *  G  M  I  Q  *  Q  F  L  L  Y  S  K :   *  T  L  W  C  *  Q  D  T  N  I  L  A  R  E  E  *  *  D  I  R  N  F  C  L  *  Q  N  V  C  L  M  L  L  C  L  S  R  S  A  L  F  H  *  G  C  V  I  R  R  D  T  *  L  S  S  T  T  D  A  I  S  C  I  A  F  F  *  N  Q  K  I  S  V  I  S  L  S  L  L  Q  Y  *  V  V  I  Q  H  C  S  *  S  G  V  S  L  D  T  Q  L  I  Q  D  *  F  A  *  F  S </second_frame>
            <third_frame>   K  L  K  E  R  K  K  R  M  L  K  S  N  K  T  A  S  C  E  A  A  L  S  S  P  L  L  L  L  S  *  T  K  W  L  Q  R  Y  L  L  V  S  H  V  F  L  P  K  R  Y  S  H  I  L  T  P  V  Q  L  S  S  T  S  H  P  K  P  G  S  I  S  P  G  L  D  A  R  R  V  K  R  G  S  S  R  S  L  V  V  C  *  K  R  K  P  R  V  M  W  R  N  C  S  Q  D  S  Q  K  L  E  T  I  *  L  L  L  M  N  S  S  F  T  G  T  F  L  I  L  I  V  F  L  M  N  L  K  R :   F  C  W  S  L  I  L  G  R  R  L  P  *  R  L  W  R  A  C  G  R  I  Y  M  Q  G  K  S  N  Q  E  V  R  *  K :   V  F  *  R  R  V  S  W  I  Y  *  L  V  K  H  L  K  Q  N  S  V  W  A  S   : G  N  Q  L  *  S  *  L  W  V  S  M  E  V  G  R  Q  H  L  L  :  E  S  W  Q  I  G  *  R  E  K  G  Q  R :   Y  Y  *  Q  L  V  I  H  L  E  Q  L  L  V  I  S  *  K  S  G  L  K  G  L  V  V  R  L  L  L  L  K  K  R  K  L  R  H  R  Q  :  L  F  H  R  L  L  K  E  E  R  K  R  V  S  I  L  F  Y  A  T  H  L  A  :  V  C  T  P  T  I  A  *  W  R  N  W  W  H  A  K  K  L  S  V  K  L  L  M  V  H  L  M :   K  S  C  *  Y  W  M  E  R  L  V  *  I  C  F  L  K  Q  E  S  L  M  R :   L  L  E  S  L  G  *  Y  *  L  N  L  M  V  L  L  E  V  A  V  W :   S  V  W  L  M  S  L  V  F  L  *  N  L  *  V  L  G  K  V  *  M  T  S  N  H  S  M  L  R  N  L  L  M  L  S  S  H  E  A  *  F  S  D  S  F  S  Y  I  L   : S  E  L  S  G  V  N  K  T  Q  T  F  W  R  E  R  S  N  E  T  L  E  I  F  V  F  N  R  T  C  A  L  C  S  F  V  Y  L  D  L  L  Y  F  I  E  D  V  S  S  E  E  T  L  S  C  P  V  R  L  M  P  L  V  A  S  P  F  F  K  I  K  R  S  V  S  S  P  C  H  C  C  S  I  K  *  *  Y  S  I  V  V  K  V  E  F  H  W  T  H  S  *  Y  K  I  D  L  H  D  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41877" stop="41524"/>
                    <exon start="40773" stop="40669"/>
                    <exon start="40439" stop="40366"/>
                    <exon start="40270" stop="40212"/>
                    <exon start="39914" stop="39877"/>
                    <exon start="38777" stop="38657"/>
                    <exon start="38569" stop="38501"/>
                    <exon start="38417" stop="38335"/>
                    <exon start="37642" stop="37574"/>
                    <exon start="37484" stop="37422"/>
                    <exon start="37296" stop="37183"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1146</number_coding_nucleotides>
                  <number_encoded_amino_acids>382</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCIIFSIAASELNEMASTLSSRLPRLPSKTVFPHSNSGSTLLHFTSKTRFDQSRFRCSAGQTGFFTKLGRLLKEKAKSDVEKLFSGFSKTRDNLAVIDELLLYWNLSDTDRVLDELEEVLLVADFGPKITIKIVESLREDIYAGKIKSGSEIKSVLKKSILDLLTSKAPKTELSLGFRKPAVIMIVGVNGGGKTTSLGKLANRLKREGAKILLAAGDTFRAAASDQLEIWAERTGCEIVVAEKEKAKASSVISQAVKRGKEEGFDIVLCDTSGRLHTNYSLMEELVACKKVVSKIVNGAPNEILLVLDGTTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVDDLQPFNAEEFVDAIFP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37175" stop="37148"/>
                    <exon start="36389" stop="36136"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSDSFSYILSELSGVNKTQTFWRERSNETLEIFVFNRTCALCSFVYLDLLYFIEDVSSEETLSCPVRLMPLVASPFFKIKRSVSSPCHCCSIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="46008" PGL_stop="46752"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46008" e_stop="46752"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="46008" e_stop="46752" e_length="745"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46008" stop="46752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582992" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACACATACTATAATAATTACAATGAAGCCATTATCATCTTCTTCGCGTTTGTTAGAAATAACGGTAATGTCGGGCGAGAATCTTCTAGATAACAGAAATCGACCGGTGAAGAAGAACGCCTTCGTAAATATCAAAACAGAATCTTATTCATGCAACCTCCAAACAACTAAACTGGATAAAGAAGGTGGAGGTTTTCCAAAGTGGAACGAGAAATTGATCGTTGATTTGCCAATGCATGCGCGGCATCTAACGGTGGAGGTTCAATGTAAAAATTCCTCCGGGATCAAAACCGTTGGGATCGCAAAAGTTCCGACGTCGGATTTTATTGGAGGAATTTTGCCCGAAGATTATTTGCATTTTTTGAGTTATAGGCTTAGGAATGAAAAGGGGGAGAAGAATGGGATAATTAATTTTTCTGTTAGGGTTAAAAATGCGGCGGCGCCGTCTCAAAGTGCGGCCGGCTGCGCTGCGGCTTATACGAAGGCCGCACCGGTGGATATGGGAAGTAGTTATAACGGTTCTTGTGGGATTGTTACGGGTTTGCCCGTTTATCCGGGGAATTTTCTAGGTAATTCAATGGCGAAGAGATTTTAAATTTTTGTTCTTTTATTTATTTTATCAAATTGAATTTGTATAGACATGTTTAGGATGAATTTGATAACTGCTTTACTCGACAGAAAGTTATGTCGTGTTTATTAATTAATAGTCTATCAATTCAAAATCATAAAATATCATTGATCATG</gDNA_template>
            <first_frame> I  H  I  L  *  *  L  Q  *  S  H  Y  H  L  L  R  V  C  *  K  *  R  *  C  R  A  R  I  F  *  I  T  E  I  D  R  *  R  R  T  P  S  *  I  S  K  Q  N  L  I  H  A  T  S  K  Q  L  N  W  I  K  K  V  E  V  F  Q  S  G  T  R  N  *  S  L  I  C  Q  C  M  R  G  I  *  R  W  R  F  N  V  K  I  P  P  G  S  K  P  L  G  S  Q  K  F  R  R  R  I  L  L  E  E  F  C  P  K  I  I  C  I  F  *  V  I  G  L  G  M  K  R  G  R  R  M  G  *  L  I  F  L  L  G  L  K  M  R  R  R  R  L  K  V  R  P  A  A  L  R  L  I  R  R  P  H  R  W  I  W  E  V  V  I  T  V  L  V  G  L  L  R  V  C  P  F  I  R  G  I  F  *  V  I  Q  W  R  R  D  F  K  F  L  F  F  Y  L  F  Y  Q  I  E  F  V  *  T  C  L  G  *  I  *  *  L  L  Y  S  T  E  S  Y  V  V  F  I  N  *  *  S  I  N  S  K  S  *  N  I  I  D  H  </first_frame>
            <second_frame>  Y  T  Y  Y  N  N  Y  N  E  A  I  I  I  F  F  A  F  V  R  N  N  G  N  V  G  R  E  S  S  R  *  Q  K  S  T  G  E  E  E  R  L  R  K  Y  Q  N  R  I  L  F  M  Q  P  P  N  N  *  T  G  *  R  R  W  R  F  S  K  V  E  R  E  I  D  R  *  F  A  N  A  C  A  A  S  N  G  G  G  S  M  *  K  F  L  R  D  Q  N  R  W  D  R  K  S  S  D  V  G  F  Y  W  R  N  F  A  R  R  L  F  A  F  F  E  L  *  A  *  E  *  K  G  G  E  E  W  D  N  *  F  F  C  *  G  *  K  C  G  G  A  V  S  K  C  G  R  L  R  C  G  L  Y  E  G  R  T  G  G  Y  G  K  *  L  *  R  F  L  W  D  C  Y  G  F  A  R  L  S  G  E  F  S  R  *  F  N  G  E  E  I  L  N  F  C  S  F  I  Y  F  I  K  L  N  L  Y  R  H  V  *  D  E  F  D  N  C  F  T  R  Q  K  V  M  S  C  L  L  I  N  S  L  S  I  Q  N  H  K  I  S  L  I  M </second_frame>
            <third_frame>   T  H  T  I  I  I  T  M  K  P  L  S  S  S  S  R  L  L  E  I  T  V  M  S  G  E  N  L  L  D  N  R  N  R  P  V  K  K  N  A  F  V  N  I  K  T  E  S  Y  S  C  N  L  Q  T  T  K  L  D  K  E  G  G  G  F  P  K  W  N  E  K  L  I  V  D  L  P  M  H  A  R  H  L  T  V  E  V  Q  C  K  N  S  S  G  I  K  T  V  G  I  A  K  V  P  T  S  D  F  I  G  G  I  L  P  E  D  Y  L  H  F  L  S  Y  R  L  R  N  E  K  G  E  K  N  G  I  I  N  F  S  V  R  V  K  N  A  A  A  P  S  Q  S  A  A  G  C  A  A  A  Y  T  K  A  A  P  V  D  M  G  S  S  Y  N  G  S  C  G  I  V  T  G  L  P  V  Y  P  G  N  F  L  G  N  S  M  A  K  R  F  *  I  F  V  L  L  F  I  L  S  N  *  I  C  I  D  M  F  R  M  N  L  I  T  A  L  L  D  R  K  L  C  R  V  Y  *  L  I  V  Y  Q  F  K  I  I  K  Y  H  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46010" stop="46603"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THTIIITMKPLSSSSRLLEITVMSGENLLDNRNRPVKKNAFVNIKTESYSCNLQTTKLDKEGGGFPKWNEKLIVDLPMHARHLTVEVQCKNSSGIKTVGIAKVPTSDFIGGILPEDYLHFLSYRLRNEKGEKNGIINFSVRVKNAAAPSQSAAGCAAAYTKAAPVDMGSSYNGSCGIVTGLPVYPGNFLGNSMAKRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="46650" PGL_stop="46226"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46650" e_stop="46226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="46650" e_stop="46226" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46650" stop="46226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594676" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTCTATACAAATTCAATTTGATAAAATAAATAAAAGAACAAAAATTTAAAATCTCTTCGCCATTGAATTACCTAGAAAATTCCCCGGATAAACGGGCAAACCCGTAACAATCCCACAAGAACCGTTATAACTACTTCCCATATCCACCGGTGCGGCCTTCGTATAAGCCGCAGCGCAGCCGGCCGCACTTTGAGACGGCGCCGCCGCATTTTTAACCCTAACAGAAAAATTAATTATCCCATTCTTCTCCCCCTTTTCATTCCTAAGCCTATAACTCAAAAAATGCAAATAATCTTCGGGCAAAATTCCTCCAATAAAATCCGACGTCGGAACTTTTGCGATCCCAACGGTTTTGATCCCGGAGGAATTTTTACATTGAACCTCCACCGTTAGATGCCGCGCATGCATTGGCAAATCAACGAT</gDNA_template>
            <first_frame> M  S  I  Q  I  Q  F  D  K  I  N  K  R  T  K  I  *  N  L  F  A  I  E  L  P  R  K  F  P  G  *  T  G  K  P  V  T  I  P  Q  E  P  L  *  L  L  P  I  S  T  G  A  A  F  V  *  A  A  A  Q  P  A  A  L  *  D  G  A  A  A  F  L  T  L  T  E  K  L  I  I  P  F  F  S  P  F  S  F  L  S  L  *  L  K  K  C  K  *  S  S  G  K  I  P  P  I  K  S  D  V  G  T  F  A  I  P  T  V  L  I  P  E  E  F  L  H  *  T  S  T  V  R  C  R  A  C  I  G  K  S  T   </first_frame>
            <second_frame>  C  L  Y  K  F  N  L  I  K  *  I  K  E  Q  K  F  K  I  S  S  P  L  N  Y  L  E  N  S  P  D  K  R  A  N  P  *  Q  S  H  K  N  R  Y  N  Y  F  P  Y  P  P  V  R  P  S  Y  K  P  Q  R  S  R  P  H  F  E  T  A  P  P  H  F  *  P  *  Q  K  N  *  L  S  H  S  S  P  P  F  H  S  *  A  Y  N  S  K  N  A  N  N  L  R  A  K  F  L  Q  *  N  P  T  S  E  L  L  R  S  Q  R  F  *  S  R  R  N  F  Y  I  E  P  P  P  L  D  A  A  H  A  L  A  N  Q  R  </second_frame>
            <third_frame>   V  Y  T  N  S  I  *  *  N  K  *  K  N  K  N  L  K  S  L  R  H  *  I  T  *  K  I  P  R  I  N  G  Q  T  R  N  N  P  T  R  T  V  I  T  T  S  H  I  H  R  C  G  L  R  I  S  R  S  A  A  G  R  T  L  R  R  R  R  R  I  F  N  P  N  R  K  I  N  Y  P  I  L  L  P  L  F  I  P  K  P  I  T  Q  K  M  Q  I  I  F  G  Q  N  S  S  N  K  I  R  R  R  N  F  C  D  P  N  G  F  D  P  G  G  I  F  T  L  N  L  H  R  *  M  P  R  M  H  W  Q  I  N  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46573" stop="46256"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIPRINGQTRNNPTRTVITTSHIHRCGLRISRSAAGRTLRRRRRIFNPNRKINYPILLPLFIPKPITQKMQIIFGQNSSNKIRRRNFCDPNGFDPGGIFTLNLHR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="48098" PGL_stop="47456"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48098" e_stop="47960"/>
            <exon e_start="47851" e_stop="47456"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.894" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48098" e_stop="47960" e_length="139"/>
          </exon>
          <intron i_serial="1" don_prob="0.894" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47959" i_stop="47852" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="47851" e_stop="47456" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48098" stop="47960"/>
              <exon start="47851" stop="47456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601968" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGATTGACTAAATACAAGTTTCGAAGACTTGGTAAATTTGAAAAACAAAATGGCGAGATTCAAGAATCATTTGGAGGAGTAATGACTGAATGTGACACTGATACACCCATTGAGCATGTTCTTCCATTGGAAGATGCC : GAATGTTGCATCTGCCTTTGTCCCTATGAAGATGGAATTGAGCTGCGTGAGCTCCCTTGTCGTCACCATTTTCACTCTGTCTGCATAGACAAGTGGTTGTACATGAACGCAACTTGTCCTCTTTGCAAGTTCAATATACTTAAAAATGGCAACCAGAGCAGCAGTGAAGAAGCATAAGACTGTAAATGCCTGCCATCAAAACGAAGATCTTGTTGTACTTATGGGTGTTCATACCATATTCACCCATCCTAGCATTCGCTTCTCTCGTCATGTTGTAGTGTGTATTTTTGTGGGCTTACATGTTTGTATAACTTTCTTGTATATCACGTGTAGATGTCCTATTTAATCTCAGTGACATGTATGAAATCTCATAATCTTGAAGGTAGTGAGTGATAA</gDNA_template>
            <first_frame> E  I  D  *  I  Q  V  S  K  T  W  *  I  *  K  T  K  W  R  D  S  R  I  I  W  R  S  N  D  *  M  *  H  *  Y  T  H  *  A  C  S  S  I  G  R  C   : R  M  L  H  L  P  L  S  L  *  R  W  N  *  A  A  *  A  P  L  S  S  P  F  S  L  C  L  H  R  Q  V  V  V  H  E  R  N  L  S  S  L  Q  V  Q  Y  T  *  K  W  Q  P  E  Q  Q  *  R  S  I  R  L  *  M  P  A  I  K  T  K  I  L  L  Y  L  W  V  F  I  P  Y  S  P  I  L  A  F  A  S  L  V  M  L  *  C  V  F  L  W  A  Y  M  F  V  *  L  S  C  I  S  R  V  D  V  L  F  N  L  S  D  M  Y  E  I  S  *  S  *  R  *  *  V  I  </first_frame>
            <second_frame>  R  L  T  K  Y  K  F  R  R  L  G  K  F  E  K  Q  N  G  E  I  Q  E  S  F  G  G  V  M  T  E  C  D  T  D  T  P  I  E  H  V  L  P  L  E  D  A  :  E  C  C  I  C  L  C  P  Y  E  D  G  I  E  L  R  E  L  P  C  R  H  H  F  H  S  V  C  I  D  K  W  L  Y  M  N  A  T  C  P  L  C  K  F  N  I  L  K  N  G  N  Q  S  S  S  E  E  A  *  D  C  K  C  L  P  S  K  R  R  S  C  C  T  Y  G  C  S  Y  H  I  H  P  S  *  H  S  L  L  S  S  C  C  S  V  Y  F  C  G  L  T  C  L  Y  N  F  L  V  Y  H  V  *  M  S  Y  L  I  S  V  T  C  M  K  S  H  N  L  E  G  S  E  *  * </second_frame>
            <third_frame>   D  *  L  N  T  S  F  E  D  L  V  N  L  K  N  K  M  A  R  F  K  N  H  L  E  E  *  *  L  N  V  T  L  I  H  P  L  S  M  F  F  H  W  K  M  P :   N  V  A  S  A  F  V  P  M  K  M  E  L  S  C  V  S  S  L  V  V  T  I  F  T  L  S  A  *  T  S  G  C  T  *  T  Q  L  V  L  F  A  S  S  I  Y  L  K  M  A  T  R  A  A  V  K  K  H  K  T  V  N  A  C  H  Q  N  E  D  L  V  V  L  M  G  V  H  T  I  F  T  H  P  S  I  R  F  S  R  H  V  V  V  C  I  F  V  G  L  H  V  C  I  T  F  L  Y  I  T  C  R  C  P  I  *  S  Q  *  H  V  *  N  L  I  I  L  K  V  V  S  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48097" stop="47960"/>
                    <exon start="47851" stop="47675"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLTKYKFRRLGKFEKQNGEIQESFGGVMTECDTDTPIEHVLPLEDAECCICLCPYEDGIELRELPCRHHFHSVCIDKWLYMNATCPLCKFNILKNGNQSSSEEA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47745" stop="47506"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQLVLFASSIYLKMATRAAVKKHKTVNACHQNEDLVVLMGVHTIFTHPSIRFSRHVVVCIFVGLHVCITFLYITCRCPI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="49183" PGL_stop="50035"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49183" e_stop="50035"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="49183" e_stop="50035" e_length="853"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49183" stop="50035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582233" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAGTAACTTTGATAGAGAAACCATCACATCCAAGTTTAAAAGTTGAACGCCCCCAAGGCCTAGCTCGAGTGGCAAAGGTGGAGGATTTGTGGCTTAGGTCACAGGCTCAAGCCCCACACCATGCAAAGCGAAGTCTGGTATTTAAGTGGAGAGGGGTAGAGGGGCGGGCCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGACCGAAGAGCCGGTCACAGGCGGATTTCTCGGTCATCAAAAATAAAAAAAGTTTAAAAGCTGAACAATGTTAATGAATTTGATTTCTTGAAAGTTGTATAGAAATAGACTGGTGTCAAATACTTGTGAAAAATGGAATGGTGTAAAATATTTTAAATGTCGAAAAATGGAAAATGTCACCTAGATAGAAATAGAGGGAACAATTTATACCTATATCCTCTGGATAAGGAACCAACTGCTTGCCATTTTCCACCCGAATGACAAACTAAACTGTATGTTCCCGATACAAGGACATTGTAGACATTTATTAGCTCCTGCCTCCTGCTATCTTAGTTTAGGTTGTATACATGTATAGGAGCTAACAACTTTTTGTACTTACTGCACCTTCTTGATGCATGTCAATGAATGATTTCATTGAAAAAAAAAATAAGAGGTCTCTATGGTCTAGTACAAAAGCAAACTACAGAGTTGAGATGAAGATAGCATATAAAATAGAGCATCTACGCTAACCATGAGTTCAAAAAAGAGGTGTTAATTAGAAGCATAATAGAATACAAAGGGATGACACAAAAGCATAAGATATCCAGAACATACTTGCACAATCTATTTCTAGCACTCTCAGACTGTCTTTTAGCTGATAATCTCAAGA</gDNA_template>
            <first_frame> Q  S  N  F  D  R  E  T  I  T  S  K  F  K  S  *  T  P  P  R  P  S  S  S  G  K  G  G  G  F  V  A  *  V  T  G  S  S  P  T  P  C  K  A  K  S  G  I  *  V  E  R  G  R  G  A  G  P  L  S  T  E  F  R  R  L  *  L  D  R  R  A  G  H  R  R  I  S  R  S  S  K  I  K  K  V  *  K  L  N  N  V  N  E  F  D  F  L  K  V  V  *  K  *  T  G  V  K  Y  L  *  K  M  E  W  C  K  I  F  *  M  S  K  N  G  K  C  H  L  D  R  N  R  G  N  N  L  Y  L  Y  P  L  D  K  E  P  T  A  C  H  F  P  P  E  *  Q  T  K  L  Y  V  P  D  T  R  T  L  *  T  F  I  S  S  C  L  L  L  S  *  F  R  L  Y  T  C  I  G  A  N  N  F  L  Y  L  L  H  L  L  D  A  C  Q  *  M  I  S  L  K  K  K  I  R  G  L  Y  G  L  V  Q  K  Q  T  T  E  L  R  *  R  *  H  I  K  *  S  I  Y  A  N  H  E  F  K  K  E  V  L  I  R  S  I  I  E  Y  K  G  M  T  Q  K  H  K  I  S  R  T  Y  L  H  N  L  F  L  A  L  S  D  C  L  L  A  D  N  L  K  </first_frame>
            <second_frame>  K  V  T  L  I  E  K  P  S  H  P  S  L  K  V  E  R  P  Q  G  L  A  R  V  A  K  V  E  D  L  W  L  R  S  Q  A  Q  A  P  H  H  A  K  R  S  L  V  F  K  W  R  G  V  E  G  R  A  H  Y  P  P  S  L  E  G  C  D  W  T  E  E  P  V  T  G  G  F  L  G  H  Q  K  *  K  K  F  K  S  *  T  M  L  M  N  L  I  S  *  K  L  Y  R  N  R  L  V  S  N  T  C  E  K  W  N  G  V  K  Y  F  K  C  R  K  M  E  N  V  T  *  I  E  I  E  G  T  I  Y  T  Y  I  L  W  I  R  N  Q  L  L  A  I  F  H  P  N  D  K  L  N  C  M  F  P  I  Q  G  H  C  R  H  L  L  A  P  A  S  C  Y  L  S  L  G  C  I  H  V  *  E  L  T  T  F  C  T  Y  C  T  F  L  M  H  V  N  E  *  F  H  *  K  K  K  *  E  V  S  M  V  *  Y  K  S  K  L  Q  S  *  D  E  D  S  I  *  N  R  A  S  T  L  T  M  S  S  K  K  R  C  *  L  E  A  *  *  N  T  K  G  *  H  K  S  I  R  Y  P  E  H  T  C  T  I  Y  F  *  H  S  Q  T  V  F  *  L  I  I  S  R </second_frame>
            <third_frame>   K  *  L  *  *  R  N  H  H  I  Q  V  *  K  L  N  A  P  K  A  *  L  E  W  Q  R  W  R  I  C  G  L  G  H  R  L  K  P  H  T  M  Q  S  E  V  W  Y  L  S  G  E  G  *  R  G  G  P  I  I  H  R  V  *  K  V  V  I  G  P  K  S  R  S  Q  A  D  F  S  V  I  K  N  K  K  S  L  K  A  E  Q  C  *  *  I  *  F  L  E  S  C  I  E  I  D  W  C  Q  I  L  V  K  N  G  M  V  *  N  I  L  N  V  E  K  W  K  M  S  P  R  *  K  *  R  E  Q  F  I  P  I  S  S  G  *  G  T  N  C  L  P  F  S  T  R  M  T  N  *  T  V  C  S  R  Y  K  D  I  V  D  I  Y  *  L  L  P  P  A  I  L  V  *  V  V  Y  M  Y  R  S  *  Q  L  F  V  L  T  A  P  S  *  C  M  S  M  N  D  F  I  E  K  K  N  K  R  S  L  W  S  S  T  K  A  N  Y  R  V  E  M  K  I  A  Y  K  I  E  H  L  R  *  P  *  V  Q  K  R  G  V  N  *  K  H  N  R  I  Q  R  D  D  T  K  A  *  D  I  Q  N  I  L  A  Q  S  I  S  S  T  L  R  L  S  F  S  *  *  S  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49184" stop="49432"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVTLIEKPSHPSLKVERPQGLARVAKVEDLWLRSQAQAPHHAKRSLVFKWRGVEGRAHYPPSLEGCDWTEEPVTGGFLGHQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="51850" PGL_stop="50364"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51850" e_stop="51174"/>
            <exon e_start="50429" e_stop="50364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.921" acc_prob="0.300" e_score="1.000"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51850" e_stop="51174" e_length="677"/>
          </exon>
          <intron i_serial="1" don_prob="0.921" acc_prob="0.300">
            <gDNA_intron_boundary i_start="51173" i_stop="50430" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.909">
            <gDNA_exon_boundary e_start="50429" e_stop="50364" e_length="66"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51850" stop="51174"/>
              <exon start="50429" stop="50364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582129" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAAACAGTATAATTTTAGTACTTTCATCCAGAACTTTGAATTTCTTCTTTCTCAAAATTTTCTAAATTACAATAGTTCACCGTCGATCCTTTCTCGGTCAATTTTATATTCTGGTGACGATGTCGACGGCGAGAGCCGGTAATGACGATAGTTCTAATGGTGTAGATACGACTCCGTTGCTTACCGATCAGGTTTTTAGGAGCCGACGGTTGGCGCGCCGGGCCCCGACCCTAAGAGGAGCGGCTCGATTTCTCCGGCGAGCAAGTAACCACCGACTGATGCGGGAGCCGTCAAGGCGCGTGAGGGAAGCTGCAGCTGAGCACATAGAGGAACGACAAAGCGATTGGGCATATTCCAAACCTATAGTGATATTGGATCTTATCTGGAACTTAGCTTTTGTGATTGTCTCAGTTTCTGTGTTGATTCTGAGCCATGATGAGTTACCTTCTATGCCTTTGAGGCTTTGGATTGTTGGATATGCTTTACAGTGTTTGCTTCACATGGTTTGTGTTTGCGTTGAGTATAGACGCCGAATTCAGCTTAGCGATTCATCTCCAATTTTGAATTCCGAGCAGAGAAACGCTGCTGGAGGTTGGAACAGTTCGAGTTCCGGAAGTGACAGCGGTGAAACTGGTGATTATCAGTCTGAGGGGCGTCAGAATGAGGATGAAATTAG : TGTAGCTAAGCATCTGGAATCTGCAAATACCATGTTTTCTTTCATTTGGTGGATAATTGGTTTCTA</gDNA_template>
            <first_frame> I  N  S  I  I  L  V  L  S  S  R  T  L  N  F  F  F  L  K  I  F  *  I  T  I  V  H  R  R  S  F  L  G  Q  F  Y  I  L  V  T  M  S  T  A  R  A  G  N  D  D  S  S  N  G  V  D  T  T  P  L  L  T  D  Q  V  F  R  S  R  R  L  A  R  R  A  P  T  L  R  G  A  A  R  F  L  R  R  A  S  N  H  R  L  M  R  E  P  S  R  R  V  R  E  A  A  A  E  H  I  E  E  R  Q  S  D  W  A  Y  S  K  P  I  V  I  L  D  L  I  W  N  L  A  F  V  I  V  S  V  S  V  L  I  L  S  H  D  E  L  P  S  M  P  L  R  L  W  I  V  G  Y  A  L  Q  C  L  L  H  M  V  C  V  C  V  E  Y  R  R  R  I  Q  L  S  D  S  S  P  I  L  N  S  E  Q  R  N  A  A  G  G  W  N  S  S  S  S  G  S  D  S  G  E  T  G  D  Y  Q  S  E  G  R  Q  N  E  D  E  I  S :   V  A  K  H  L  E  S  A  N  T  M  F  S  F  I  W  W  I  I  G  F   </first_frame>
            <second_frame>  *  T  V  *  F  *  Y  F  H  P  E  L  *  I  S  S  F  S  K  F  S  K  L  Q  *  F  T  V  D  P  F  S  V  N  F  I  F  W  *  R  C  R  R  R  E  P  V  M  T  I  V  L  M  V  *  I  R  L  R  C  L  P  I  R  F  L  G  A  D  G  W  R  A  G  P  R  P  *  E  E  R  L  D  F  S  G  E  Q  V  T  T  D  *  C  G  S  R  Q  G  A  *  G  K  L  Q  L  S  T  *  R  N  D  K  A  I  G  H  I  P  N  L  *  *  Y  W  I  L  S  G  T  *  L  L  *  L  S  Q  F  L  C  *  F  *  A  M  M  S  Y  L  L  C  L  *  G  F  G  L  L  D  M  L  Y  S  V  C  F  T  W  F  V  F  A  L  S  I  D  A  E  F  S  L  A  I  H  L  Q  F  *  I  P  S  R  E  T  L  L  E  V  G  T  V  R  V  P  E  V  T  A  V  K  L  V  I  I  S  L  R  G  V  R  M  R  M  K  L   : V  *  L  S  I  W  N  L  Q  I  P  C  F  L  S  F  G  G  *  L  V  S  </second_frame>
            <third_frame>   K  Q  Y  N  F  S  T  F  I  Q  N  F  E  F  L  L  S  Q  N  F  L  N  Y  N  S  S  P  S  I  L  S  R  S  I  L  Y  S  G  D  D  V  D  G  E  S  R  *  *  R  *  F  *  W  C  R  Y  D  S  V  A  Y  R  S  G  F  *  E  P  T  V  G  A  P  G  P  D  P  K  R  S  G  S  I  S  P  A  S  K  *  P  P  T  D  A  G  A  V  K  A  R  E  G  S  C  S  *  A  H  R  G  T  T  K  R  L  G  I  F  Q  T  Y  S  D  I  G  S  Y  L  E  L  S  F  C  D  C  L  S  F  C  V  D  S  E  P  *  *  V  T  F  Y  A  F  E  A  L  D  C  W  I  C  F  T  V  F  A  S  H  G  L  C  L  R  *  V  *  T  P  N  S  A  *  R  F  I  S  N  F  E  F  R  A  E  K  R  C  W  R  L  E  Q  F  E  F  R  K  *  Q  R  *  N  W  *  L  S  V  *  G  A  S  E  *  G  *  N  *  :  C  S  *  A  S  G  I  C  K  Y  H  V  F  F  H  L  V  D  N  W  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51784" stop="51174"/>
                    <exon start="50429" stop="50366"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITIVHRRSFLGQFYILVTMSTARAGNDDSSNGVDTTPLLTDQVFRSRRLARRAPTLRGAARFLRRASNHRLMREPSRRVREAAAEHIEERQSDWAYSKPIVILDLIWNLAFVIVSVSVLILSHDELPSMPLRLWIVGYALQCLLHMVCVCVEYRRRIQLSDSSPILNSEQRNAAGGWNSSSSGSDSGETGDYQSEGRQNEDEISVAKHLESANTMFSFIWWIIGF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="64421" PGL_stop="60116"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64421" e_stop="64092"/>
            <exon e_start="63439" e_stop="63167"/>
            <exon e_start="63064" e_stop="62972"/>
            <exon e_start="62870" e_stop="62811"/>
            <exon e_start="62698" e_stop="62426"/>
            <exon e_start="62289" e_stop="62215"/>
            <exon e_start="62040" e_stop="61984"/>
            <exon e_start="61896" e_stop="61756"/>
            <exon e_start="61478" e_stop="61428"/>
            <exon e_start="61321" e_stop="61226"/>
            <exon e_start="61061" e_stop="60978"/>
            <exon e_start="60793" e_stop="60691"/>
            <exon e_start="60616" e_stop="60116"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.752" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64421" e_stop="64092" e_length="330"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64091" i_stop="63440" i_length="652"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63439" e_stop="63167" e_length="273"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63166" i_stop="63065" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63064" e_stop="62972" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.980">
            <gDNA_intron_boundary i_start="62971" i_stop="62871" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62870" e_stop="62811" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="62810" i_stop="62699" i_length="112"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="62698" e_stop="62426" e_length="273"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.941">
            <gDNA_intron_boundary i_start="62425" i_stop="62290" i_length="136"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="62289" e_stop="62215" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.979" acc_prob="0.969">
            <gDNA_intron_boundary i_start="62214" i_stop="62041" i_length="174"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="62040" e_stop="61984" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="0.949" acc_prob="0.982">
            <gDNA_intron_boundary i_start="61983" i_stop="61897" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="61896" e_stop="61756" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="61755" i_stop="61479" i_length="277"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="61478" e_stop="61428" e_length="51"/>
          </exon>
          <intron i_serial="9" don_prob="0.979" acc_prob="0.996">
            <gDNA_intron_boundary i_start="61427" i_stop="61322" i_length="106"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="61321" e_stop="61226" e_length="96"/>
          </exon>
          <intron i_serial="10" don_prob="0.975" acc_prob="0.752">
            <gDNA_intron_boundary i_start="61225" i_stop="61062" i_length="164"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="61061" e_stop="60978" e_length="84"/>
          </exon>
          <intron i_serial="11" don_prob="0.995" acc_prob="0.981">
            <gDNA_intron_boundary i_start="60977" i_stop="60794" i_length="184"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="60793" e_stop="60691" e_length="103"/>
          </exon>
          <intron i_serial="12" don_prob="1.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="60690" i_stop="60617" i_length="74"/>
          </intron>
          <exon e_serial="13" e_score="0.998">
            <gDNA_exon_boundary e_start="60616" e_stop="60116" e_length="501"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64421" stop="64092"/>
              <exon start="63439" stop="63167"/>
              <exon start="63064" stop="62972"/>
              <exon start="62870" stop="62811"/>
              <exon start="62698" stop="62426"/>
              <exon start="62289" stop="62215"/>
              <exon start="62040" stop="61984"/>
              <exon start="61896" stop="61756"/>
              <exon start="61478" stop="61428"/>
              <exon start="61321" stop="61226"/>
              <exon start="61061" stop="60978"/>
              <exon start="60793" stop="60691"/>
              <exon start="60616" stop="60116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574092" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATTTATTTTTATTTTTATGATAAAAGGAGAGGAGAGAGAGTGGGAAGAGGCTTTATGTTGTCATATTTTCTCAATTTGGCATTTCAAAGTCTAATTTCTCTATCTTGTTTGTTTTTCTCTCTTTCTCTCTCCCTCCTCCATCTTCACCATTGAAGAAAAATACTTTTCAGGTGTTTGAGGAAGAAGAGAAGGACTTATCAATTACTCTCGAAAAATTTTCAAGGACCGCTCAGAGGGGTTTTTCTTTTGGGCTCTTGGCGAAGCAGAGATGAATGTCATGCGTCGCCTTAAGAGCATTGCTTCTGGACGTTCTTCTGTTTCAGATCCT : GGTGGTGATTCAAGCATAAAGAGGGTGAAGGTTGAGAAAGAAGTAGATCAAAGAGTGGTTGGTGAAACTCAAATGGAAGAGGGATGTACAACTACTACAGTTCCAAAGGAAGACATGGCTTCTACATCTATGGAAACCACTGCTGGAAGTACCTCAACAATGGATATTAGACTTGAAAATTCTGAACTTGATGAACTTCCTAAAGAAATGCATGAAATGAAAATTAAGGATGAAAAAGATGATAAAGCTGATAGTCTAGATGATAATTTGAAG : GATATGGAACCTGCTGTTGTTAGTGGAAATGGAACAGAAACTGGTCAGATTATTGTGACTACTGTGAGTGGTAGGAATGGACAAGAGAAACAG : ACATTGTCTTACATGGCGGAGCGCGTGGTTGGCACTGGTTCATTTGGAGTTGTCTTTCAG : GCTAAGTGCTTGGAAACTGGTGAATCTGTTGCAATAAAGAAGGTCTTACAGGATAGGAGATACAAGAACAGGGAACTTCAGATTATGCGCACACTTGATCATCCTAATGTTGTTAAACTACGACACTGCTTCTATTCTACTACTGAGAAGAATGAAGTCTACCTTAACCTTGTCCTGGAATACGTGTCTGAAACTGTTTACCGAGTATCAAGGCACTACAGCAGAATGAACCAACACATGCCCAATATATATGTGCAGCTATACACATACCAG : ATATGCCGTGCTCTGAATTACATGCATGGTGTCCTTGGTGTATGCCATCGTGATATTAAACCACAGAATCTTTTG : GTTAATCCCCACTCGCATCAGCTAAAGCTCTGTGATTTTGGTAGTGCAAAGATGTTG : GTGCCTGGAGAGCCCAACATATCATACATTTGTTCTCGTTATTATCGGGCTCCTGAATTGATCTTTGGTGCTACTGAGTACACAACTGCAATTGACATGTGGTCTGCTGGTTGCGTTATGGCTGAGCTACTTTTGGGACAG : CCTCTTTTCCCTGGAGAAAGTGGCGTTGATCAGCTGGTCGAAATCATCAAG : ATATTGGGGACACCAACAAGAGAGGAGATTAGGTGCATGAATCCAAATTACACAGAGTTCAAGTTTCCCCAGATCAAAGCTCACCCATGGCACAAG : ATATTTCATAAAAGAATGCCCCCTGAAGCAGTTGATTTGGTGTCGAGGCTTCTCCAATATTCTCCAACTCTACGCTGCACTGCT : TTGGAAGCATGTGCACACCCTTTCTTTGATTCTTTAAGGGAACCAAATGCTTGCTTGCCAAATGGGCGACCTCTGCCTCCCCTATTCAACTTTTCACCTCAAG : AGCTCTCTGGCGTGCCTGCTGAACTGCGAAAGCGCCTTATTCCTGAACACTTGCGCAAGTGAATTTTGTGAAGACAGTTGCTTAGGCTTTGTAAATGGGTTTTTCTTGAGAGGTGTAGTTGCCCAATCAGCGTTATGTTGCTCCAGCAAATGCAGCTGCTTTCTTGGCCTTAGTAATATTTGATGGAATACAACATCATAACATGGGAGCTAGTTACTTGCTAGTTGGTTTCGGATGACGGATATGACAGTAAGATTTGCGGGTGATTTATCGCAGTGTCTCTCGTCTTTATAAACATATTATGTTCAGTACCCCAGTAGTTTTAGATGAGAGTTTTCATCTGTTAATTTATACCTTTTAGCAAGCAATATCTAGTTTGAGGGGTATTCATAAGATTAATGAGTGCTCCCAAACTTGGAGTTATAGATGAATGATTAGGAGTTTTATATTCGTTAAAGTATAACATTTCATGTCTTCTGGTTGCCCTATAGAAATGTGAAA</gDNA_template>
            <first_frame> G  F  I  F  I  F  M  I  K  G  E  E  R  E  W  E  E  A  L  C  C  H  I  F  S  I  W  H  F  K  V  *  F  L  Y  L  V  C  F  S  L  F  L  S  P  S  S  I  F  T  I  E  E  K  Y  F  S  G  V  *  G  R  R  E  G  L  I  N  Y  S  R  K  I  F  K  D  R  S  E  G  F  F  F  W  A  L  G  E  A  E  M  N  V  M  R  R  L  K  S  I  A  S  G  R  S  S  V  S  D  P  :  G  G  D  S  S  I  K  R  V  K  V  E  K  E  V  D  Q  R  V  V  G  E  T  Q  M  E  E  G  C  T  T  T  T  V  P  K  E  D  M  A  S  T  S  M  E  T  T  A  G  S  T  S  T  M  D  I  R  L  E  N  S  E  L  D  E  L  P  K  E  M  H  E  M  K  I  K  D  E  K  D  D  K  A  D  S  L  D  D  N  L  K  :  D  M  E  P  A  V  V  S  G  N  G  T  E  T  G  Q  I  I  V  T  T  V  S  G  R  N  G  Q  E  K  Q  :  T  L  S  Y  M  A  E  R  V  V  G  T  G  S  F  G  V  V  F  Q  :  A  K  C  L  E  T  G  E  S  V  A  I  K  K  V  L  Q  D  R  R  Y  K  N  R  E  L  Q  I  M  R  T  L  D  H  P  N  V  V  K  L  R  H  C  F  Y  S  T  T  E  K  N  E  V  Y  L  N  L  V  L  E  Y  V  S  E  T  V  Y  R  V  S  R  H  Y  S  R  M  N  Q  H  M  P  N  I  Y  V  Q  L  Y  T  Y  Q  :  I  C  R  A  L  N  Y  M  H  G  V  L  G  V  C  H  R  D  I  K  P  Q  N  L  L  :  V  N  P  H  S  H  Q  L  K  L  C  D  F  G  S  A  K  M  L  :  V  P  G  E  P  N  I  S  Y  I  C  S  R  Y  Y  R  A  P  E  L  I  F  G  A  T  E  Y  T  T  A  I  D  M  W  S  A  G  C  V  M  A  E  L  L  L  G  Q  :  P  L  F  P  G  E  S  G  V  D  Q  L  V  E  I  I  K  :  I  L  G  T  P  T  R  E  E  I  R  C  M  N  P  N  Y  T  E  F  K  F  P  Q  I  K  A  H  P  W  H  K  :  I  F  H  K  R  M  P  P  E  A  V  D  L  V  S  R  L  L  Q  Y  S  P  T  L  R  C  T  A  :  L  E  A  C  A  H  P  F  F  D  S  L  R  E  P  N  A  C  L  P  N  G  R  P  L  P  P  L  F  N  F  S  P  Q   : E  L  S  G  V  P  A  E  L  R  K  R  L  I  P  E  H  L  R  K  *  I  L  *  R  Q  L  L  R  L  C  K  W  V  F  L  E  R  C  S  C  P  I  S  V  M  L  L  Q  Q  M  Q  L  L  S  W  P  *  *  Y  L  M  E  Y  N  I  I  T  W  E  L  V  T  C  *  L  V  S  D  D  G  Y  D  S  K  I  C  G  *  F  I  A  V  S  L  V  F  I  N  I  L  C  S  V  P  Q  *  F  *  M  R  V  F  I  C  *  F  I  P  F  S  K  Q  Y  L  V  *  G  V  F  I  R  L  M  S  A  P  K  L  G  V  I  D  E  *  L  G  V  L  Y  S  L  K  Y  N  I  S  C  L  L  V  A  L  *  K  C  E  </first_frame>
            <second_frame>  D  L  F  L  F  L  *  *  K  E  R  R  E  S  G  K  R  L  Y  V  V  I  F  S  Q  F  G  I  S  K  S  N  F  S  I  L  F  V  F  L  S  F  S  L  P  P  P  S  S  P  L  K  K  N  T  F  Q  V  F  E  E  E  E  K  D  L  S  I  T  L  E  K  F  S  R  T  A  Q  R  G  F  S  F  G  L  L  A  K  Q  R  *  M  S  C  V  A  L  R  A  L  L  L  D  V  L  L  F  Q  I  L :   V  V  I  Q  A  *  R  G  *  R  L  R  K  K  *  I  K  E  W  L  V  K  L  K  W  K  R  D  V  Q  L  L  Q  F  Q  R  K  T  W  L  L  H  L  W  K  P  L  L  E  V  P  Q  Q  W  I  L  D  L  K  I  L  N  L  M  N  F  L  K  K  C  M  K  *  K  L  R  M  K  K  M  I  K  L  I  V  *  M  I  I  *  R :   I  W  N  L  L  L  L  V  E  M  E  Q  K  L  V  R  L  L  *  L  L  *  V  V  G  M  D  K  R  N  R :   H  C  L  T  W  R  S  A  W  L  A  L  V  H  L  E  L  S  F  R :   L  S  A  W  K  L  V  N  L  L  Q  *  R  R  S  Y  R  I  G  D  T  R  T  G  N  F  R  L  C  A  H  L  I  I  L  M  L  L  N  Y  D  T  A  S  I  L  L  L  R  R  M  K  S  T  L  T  L  S  W  N  T  C  L  K  L  F  T  E  Y  Q  G  T  T  A  E  *  T  N  T  C  P  I  Y  M  C  S  Y  T  H  T  R :   Y  A  V  L  *  I  T  C  M  V  S  L  V  Y  A  I  V  I  L  N  H  R  I  F  W :   L  I  P  T  R  I  S  *  S  S  V  I  L  V  V  Q  R  C  W :   C  L  E  S  P  T  Y  H  T  F  V  L  V  I  I  G  L  L  N  *  S  L  V  L  L  S  T  Q  L  Q  L  T  C  G  L  L  V  A  L  W  L  S  Y  F  W  D  S :   L  F  S  L  E  K  V  A  L  I  S  W  S  K  S  S  R :   Y  W  G  H  Q  Q  E  R  R  L  G  A  *  I  Q  I  T  Q  S  S  S  F  P  R  S  K  L  T  H  G  T  R :   Y  F  I  K  E  C  P  L  K  Q  L  I  W  C  R  G  F  S  N  I  L  Q  L  Y  A  A  L  L :   W  K  H  V  H  T  L  S  L  I  L  *  G  N  Q  M  L  A  C  Q  M  G  D  L  C  L  P  Y  S  T  F  H  L  K  :  S  S  L  A  C  L  L  N  C  E  S  A  L  F  L  N  T  C  A  S  E  F  C  E  D  S  C  L  G  F  V  N  G  F  F  L  R  G  V  V  A  Q  S  A  L  C  C  S  S  K  C  S  C  F  L  G  L  S  N  I  *  W  N  T  T  S  *  H  G  S  *  L  L  A  S  W  F  R  M  T  D  M  T  V  R  F  A  G  D  L  S  Q  C  L  S  S  L  *  T  Y  Y  V  Q  Y  P  S  S  F  R  *  E  F  S  S  V  N  L  Y  L  L  A  S  N  I  *  F  E  G  Y  S  *  D  *  *  V  L  P  N  L  E  L  *  M  N  D  *  E  F  Y  I  R  *  S  I  T  F  H  V  F  W  L  P  Y  R  N  V  K </second_frame>
            <third_frame>   I  Y  F  Y  F  Y  D  K  R  R  G  E  R  V  G  R  G  F  M  L  S  Y  F  L  N  L  A  F  Q  S  L  I  S  L  S  C  L  F  F  S  L  S  L  S  L  L  H  L  H  H  *  R  K  I  L  F  R  C  L  R  K  K  R  R  T  Y  Q  L  L  S  K  N  F  Q  G  P  L  R  G  V  F  L  L  G  S  W  R  S  R  D  E  C  H  A  S  P  *  E  H  C  F  W  T  F  F  C  F  R  S   : W  W  *  F  K  H  K  E  G  E  G  *  E  R  S  R  S  K  S  G  W  *  N  S  N  G  R  G  M  Y  N  Y  Y  S  S  K  G  R  H  G  F  Y  I  Y  G  N  H  C  W  K  Y  L  N  N  G  Y  *  T  *  K  F  *  T  *  *  T  S  *  R  N  A  *  N  E  N  *  G  *  K  R  *  *  S  *  *  S  R  *  *  F  E   : G  Y  G  T  C  C  C  *  W  K  W  N  R  N  W  S  D  Y  C  D  Y  C  E  W  *  E  W  T  R  E  T   : D  I  V  L  H  G  G  A  R  G  W  H  W  F  I  W  S  C  L  S   : G  *  V  L  G  N  W  *  I  C  C  N  K  E  G  L  T  G  *  E  I  Q  E  Q  G  T  S  D  Y  A  H  T  *  S  S  *  C  C  *  T  T  T  L  L  L  F  Y  Y  *  E  E  *  S  L  P  *  P  C  P  G  I  R  V  *  N  C  L  P  S  I  K  A  L  Q  Q  N  E  P  T  H  A  Q  Y  I  C  A  A  I  H  I  P   : D  M  P  C  S  E  L  H  A  W  C  P  W  C  M  P  S  *  Y  *  T  T  E  S  F   : G  *  S  P  L  A  S  A  K  A  L  *  F  W  *  C  K  D  V   : G  A  W  R  A  Q  H  I  I  H  L  F  S  L  L  S  G  S  *  I  D  L  W  C  Y  *  V  H  N  C  N  *  H  V  V  C  W  L  R  Y  G  *  A  T  F  G  T   : A  S  F  P  W  R  K  W  R  *  S  A  G  R  N  H  Q   : D  I  G  D  T  N  K  R  G  D  *  V  H  E  S  K  L  H  R  V  Q  V  S  P  D  Q  S  S  P  M  A  Q   : D  I  S  *  K  N  A  P  *  S  S  *  F  G  V  E  A  S  P  I  F  S  N  S  T  L  H  C   : F  G  S  M  C  T  P  F  L  *  F  F  K  G  T  K  C  L  L  A  K  W  A  T  S  A  S  P  I  Q  L  F  T  S  R :   A  L  W  R  A  C  *  T  A  K  A  P  Y  S  *  T  L  A  Q  V  N  F  V  K  T  V  A  *  A  L  *  M  G  F  S  *  E  V  *  L  P  N  Q  R  Y  V  A  P  A  N  A  A  A  F  L  A  L  V  I  F  D  G  I  Q  H  H  N  M  G  A  S  Y  L  L  V  G  F  G  *  R  I  *  Q  *  D  L  R  V  I  Y  R  S  V  S  R  L  Y  K  H  I  M  F  S  T  P  V  V  L  D  E  S  F  H  L  L  I  Y  T  F  *  Q  A  I  S  S  L  R  G  I  H  K  I  N  E  C  S  Q  T  W  S  Y  R  *  M  I  R  S  F  I  F  V  K  V  *  H  F  M  S  S  G  C  P  I  E  M  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64241" stop="64092"/>
                    <exon start="63439" stop="63167"/>
                    <exon start="63064" stop="62972"/>
                    <exon start="62870" stop="62811"/>
                    <exon start="62698" stop="62426"/>
                    <exon start="62289" stop="62215"/>
                    <exon start="62040" stop="61984"/>
                    <exon start="61896" stop="61756"/>
                    <exon start="61478" stop="61428"/>
                    <exon start="61321" stop="61226"/>
                    <exon start="61061" stop="60978"/>
                    <exon start="60793" stop="60691"/>
                    <exon start="60616" stop="60555"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1515</number_coding_nucleotides>
                  <number_encoded_amino_acids>505</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRREGLINYSRKIFKDRSEGFFFWALGEAEMNVMRRLKSIASGRSSVSDPGGDSSIKRVKVEKEVDQRVVGETQMEEGCTTTTVPKEDMASTSMETTAGSTSTMDIRLENSELDELPKEMHEMKIKDEKDDKADSLDDNLKDMEPAVVSGNGTETGQIIVTTVSGRNGQEKQTLSYMAERVVGTGSFGVVFQAKCLETGESVAIKKVLQDRRYKNRELQIMRTLDHPNVVKLRHCFYSTTEKNEVYLNLVLEYVSETVYRVSRHYSRMNQHMPNIYVQLYTYQICRALNYMHGVLGVCHRDIKPQNLLVNPHSHQLKLCDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSAGCVMAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIRCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPTLRCTALEACAHPFFDSLREPNACLPNGRPLPPLFNFSPQELSGVPAELRKRLIPEHLRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="84792" PGL_stop="84287"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84792" e_stop="84696"/>
            <exon e_start="84594" e_stop="84287"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.918"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="84792" e_stop="84696" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84695" i_stop="84595" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="84594" e_stop="84287" e_length="308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84792" stop="84696"/>
              <exon start="84594" stop="84287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573542" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTGCACTTCAATGCGAAAGCTAATATTTGAGACAAGGAGAACAACTTTTTTTAATATATTTTTTTTTAATAATATATAGTTTAACTAGTAGAAAG : ACCATTGCTAGGTGGTAAGGGCCGGCTCAACTAGCTCGAGGTGTTATTAATTTGGTGTTCAACACAAAGCAAAGGTGGTGGTTCGGGTATTGACTCAGGGTACTAATATCAGTTGGTTCATGAATGAATCAGCTTTTGGGTGAAAATTTTCAATTTGGACAAGTTGTGTGACAGAATTATGTCAATTTCAGAAGCTATGGTTTGTTTTTGATGAATTTATAGTTGTTTGTTGAAGAGTCATAATGGCTCTTTTGTTTTGTATGTTATGGTGGGGGACAATTGACAAATCAACTATTGTACGTTATCTT</gDNA_template>
            <first_frame> S  C  T  S  M  R  K  L  I  F  E  T  R  R  T  T  F  F  N  I  F  F  F  N  N  I  *  F  N  *  *  K   : D  H  C  *  V  V  R  A  G  S  T  S  S  R  C  Y  *  F  G  V  Q  H  K  A  K  V  V  V  R  V  L  T  Q  G  T  N  I  S  W  F  M  N  E  S  A  F  G  *  K  F  S  I  W  T  S  C  V  T  E  L  C  Q  F  Q  K  L  W  F  V  F  D  E  F  I  V  V  C  *  R  V  I  M  A  L  L  F  C  M  L  W  W  G  T  I  D  K  S  T  I  V  R  Y  L </first_frame>
            <second_frame>  A  A  L  Q  C  E  S  *  Y  L  R  Q  G  E  Q  L  F  L  I  Y  F  F  L  I  I  Y  S  L  T  S  R  K  :  T  I  A  R  W  *  G  P  A  Q  L  A  R  G  V  I  N  L  V  F  N  T  K  Q  R  W  W  F  G  Y  *  L  R  V  L  I  S  V  G  S  *  M  N  Q  L  L  G  E  N  F  Q  F  G  Q  V  V  *  Q  N  Y  V  N  F  R  S  Y  G  L  F  L  M  N  L  *  L  F  V  E  E  S  *  W  L  F  C  F  V  C  Y  G  G  G  Q  L  T  N  Q  L  L  Y  V  I   </second_frame>
            <third_frame>   L  H  F  N  A  K  A  N  I  *  D  K  E  N  N  F  F  *  Y  I  F  F  *  *  Y  I  V  *  L  V  E  R :   P  L  L  G  G  K  G  R  L  N  *  L  E  V  L  L  I  W  C  S  T  Q  S  K  G  G  G  S  G  I  D  S  G  Y  *  Y  Q  L  V  H  E  *  I  S  F  W  V  K  I  F  N  L  D  K  L  C  D  R  I  M  S  I  S  E  A  M  V  C  F  *  *  I  Y  S  C  L  L  K  S  H  N  G  S  F  V  L  Y  V  M  V  G  D  N  *  Q  I  N  Y  C  T  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01SLm0026F20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="88050" PGL_stop="84957"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88050" e_stop="87971"/>
            <exon e_start="87869" e_stop="87657"/>
            <exon e_start="86272" e_stop="86098"/>
            <exon e_start="85971" e_stop="85604"/>
            <exon e_start="85148" e_stop="84957"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="0.975"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.991"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="0.997"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="88050" e_stop="87971" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="87970" i_stop="87870" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="87869" e_stop="87657" e_length="213"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="87656" i_stop="86273" i_length="1384"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86272" e_stop="86098" e_length="175"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="86097" i_stop="85972" i_length="126"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="85971" e_stop="85604" e_length="368"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="85603" i_stop="85149" i_length="455"/>
          </intron>
          <exon e_serial="5" e_score="0.979">
            <gDNA_exon_boundary e_start="85148" e_stop="84957" e_length="192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88050" stop="87971"/>
              <exon start="87869" stop="87657"/>
              <exon start="86272" stop="86098"/>
              <exon start="85971" stop="85604"/>
              <exon start="85148" stop="84957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583997" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATGTTTGATTGCTAGAACCTCAACAACAGATGTTATATCAAGTGGTATGGGTGGAACCAGAAATGGTGCACTTCAGCTG : ATGCATGCTGAACTCCAAGTGCTTTCACCATTAGTACCAATTAGAGAGGTCAATTTCCTGCGTTTCTGCAAACAACATGCTGAAGGTGTCTGGGCTGTCGTTGATGTATCGATTGATACCATCCGTGAAACTTCTGGTGCACCAACGTTTCCAAATAGCAGAAGGCTTCCTTCTGGCTGTGTTGTTCAAGATATGCCCAATGGCTACAGCAAA : GTTACATGGGTAGAACATGCCGAATATGAAGAGGGTGCAAATCACCATCTTTACCGGCAGTTAATTAGCGCGGGTATGGGGTTTGGCGCACAAAGATGGGTTGCAACCCTCCAACGCCAGTGTGAGTGTCTTGCAATTCTCATGTCATCCACCGTGTCTGCCAGGGATCATACAG : CAATAACTCCAAGTGGGAGGCGTAGCATGTTGAAGCTAGCACAACGCATGACAAACAACTTTTGTGCTGGTGTTTGTGCTTCAACGGTACACAAGTGGAACAAACTTTGTGCAGGTAATGTTGATGAAGATGTACGTGTCATGACTCGAAAGAGCGTCGATGACCCTGGTGAACCAGCAGGGATCGTCTTAAGCGCTGCTACTTCCGTTTGGTTGCCCGTTTCCCCTCAAAGACTCTTTGATTTCCTCCGTGACGAACGCCTCCGTAGCGAATGGGATATCCTATCCAACGGTGGCCCTATGCAAGAAATGGCTCATATTGCCAAAGGCCAAGATCATGGCAACTGCGTCTCTCTCCTTCGTGCTAGT : GCTATGAACGCGAATCAGAGCAGCATGTTGATACTTCAGGAGACTTGCATAGACGCGGCTGGGGCGCTTGTTGTATACGCGCCAGTTGATATTCCGGCAATGCACGTGGTGATGAACGGTGGAGATTCGGCTTACGTGGCTTTGCTTCCTTCGGGATTCTCAATTGTACCCGACGGCCCAGGATCTCGTGGG</gDNA_template>
            <first_frame> H  V  *  L  L  E  P  Q  Q  Q  M  L  Y  Q  V  V  W  V  E  P  E  M  V  H  F  S  * :   C  M  L  N  S  K  C  F  H  H  *  Y  Q  L  E  R  S  I  S  C  V  S  A  N  N  M  L  K  V  S  G  L  S  L  M  Y  R  L  I  P  S  V  K  L  L  V  H  Q  R  F  Q  I  A  E  G  F  L  L  A  V  L  F  K  I  C  P  M  A  T  A  K :   L  H  G  *  N  M  P  N  M  K  R  V  Q  I  T  I  F  T  G  S  *  L  A  R  V  W  G  L  A  H  K  D  G  L  Q  P  S  N  A  S  V  S  V  L  Q  F  S  C  H  P  P  C  L  P  G  I  I  Q  :  Q  *  L  Q  V  G  G  V  A  C  *  S  *  H  N  A  *  Q  T  T  F  V  L  V  F  V  L  Q  R  Y  T  S  G  T  N  F  V  Q  V  M  L  M  K  M  Y  V  S  *  L  E  R  A  S  M  T  L  V  N  Q  Q  G  S  S  *  A  L  L  L  P  F  G  C  P  F  P  L  K  D  S  L  I  S  S  V  T  N  A  S  V  A  N  G  I  S  Y  P  T  V  A  L  C  K  K  W  L  I  L  P  K  A  K  I  M  A  T  A  S  L  S  F  V  L  V :   L  *  T  R  I  R  A  A  C  *  Y  F  R  R  L  A  *  T  R  L  G  R  L  L  Y  T  R  Q  L  I  F  R  Q  C  T  W  *  *  T  V  E  I  R  L  T  W  L  C  F  L  R  D  S  Q  L  Y  P  T  A  Q  D  L  V   </first_frame>
            <second_frame>  M  F  D  C  *  N  L  N  N  R  C  Y  I  K  W  Y  G  W  N  Q  K  W  C  T  S  A   : D  A  C  *  T  P  S  A  F  T  I  S  T  N  *  R  G  Q  F  P  A  F  L  Q  T  T  C  *  R  C  L  G  C  R  *  C  I  D  *  Y  H  P  *  N  F  W  C  T  N  V  S  K  *  Q  K  A  S  F  W  L  C  C  S  R  Y  A  Q  W  L  Q  Q   : S  Y  M  G  R  T  C  R  I  *  R  G  C  K  S  P  S  L  P  A  V  N  *  R  G  Y  G  V  W  R  T  K  M  G  C  N  P  P  T  P  V  *  V  S  C  N  S  H  V  I  H  R  V  C  Q  G  S  Y  S :   N  N  S  K  W  E  A  *  H  V  E  A  S  T  T  H  D  K  Q  L  L  C  W  C  L  C  F  N  G  T  Q  V  E  Q  T  L  C  R  *  C  *  *  R  C  T  C  H  D  S  K  E  R  R  *  P  W  *  T  S  R  D  R  L  K  R  C  Y  F  R  L  V  A  R  F  P  S  K  T  L  *  F  P  P  *  R  T  P  P  *  R  M  G  Y  P  I  Q  R  W  P  Y  A  R  N  G  S  Y  C  Q  R  P  R  S  W  Q  L  R  L  S  P  S  C  *   : C  Y  E  R  E  S  E  Q  H  V  D  T  S  G  D  L  H  R  R  G  W  G  A  C  C  I  R  A  S  *  Y  S  G  N  A  R  G  D  E  R  W  R  F  G  L  R  G  F  A  S  F  G  I  L  N  C  T  R  R  P  R  I  S  W  </second_frame>
            <third_frame>   C  L  I  A  R  T  S  T  T  D  V  I  S  S  G  M  G  G  T  R  N  G  A  L  Q  L  :  M  H  A  E  L  Q  V  L  S  P  L  V  P  I  R  E  V  N  F  L  R  F  C  K  Q  H  A  E  G  V  W  A  V  V  D  V  S  I  D  T  I  R  E  T  S  G  A  P  T  F  P  N  S  R  R  L  P  S  G  C  V  V  Q  D  M  P  N  G  Y  S  K  :  V  T  W  V  E  H  A  E  Y  E  E  G  A  N  H  H  L  Y  R  Q  L  I  S  A  G  M  G  F  G  A  Q  R  W  V  A  T  L  Q  R  Q  C  E  C  L  A  I  L  M  S  S  T  V  S  A  R  D  H  T   : A  I  T  P  S  G  R  R  S  M  L  K  L  A  Q  R  M  T  N  N  F  C  A  G  V  C  A  S  T  V  H  K  W  N  K  L  C  A  G  N  V  D  E  D  V  R  V  M  T  R  K  S  V  D  D  P  G  E  P  A  G  I  V  L  S  A  A  T  S  V  W  L  P  V  S  P  Q  R  L  F  D  F  L  R  D  E  R  L  R  S  E  W  D  I  L  S  N  G  G  P  M  Q  E  M  A  H  I  A  K  G  Q  D  H  G  N  C  V  S  L  L  R  A  S  :  A  M  N  A  N  Q  S  S  M  L  I  L  Q  E  T  C  I  D  A  A  G  A  L  V  V  Y  A  P  V  D  I  P  A  M  H  V  V  M  N  G  G  D  S  A  Y  V  A  L  L  P  S  G  F  S  I  V  P  D  G  P  G  S  R  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88048" stop="87971"/>
                    <exon start="87869" stop="87657"/>
                    <exon start="86272" stop="86098"/>
                    <exon start="85971" stop="85604"/>
                    <exon start="85148" stop="84957"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLIARTSTTDVISSGMGGTRNGALQLMHAELQVLSPLVPIREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPTFPNSRRLPSGCVVQDMPNGYSKVTWVEHAEYEEGANHHLYRQLISAGMGFGAQRWVATLQRQCECLAILMSSTVSARDHTAITPSGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLCAGNVDEDVRVMTRKSVDDPGEPAGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGALVVYAPVDIPAMHVVMNGGDSAYVALLPSGFSIVPDGPGSRG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="89903" PGL_stop="88652"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89903" e_stop="89485"/>
            <exon e_start="89407" e_stop="89187"/>
            <exon e_start="89089" e_stop="88972"/>
            <exon e_start="88878" e_stop="88652"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="0.986"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="89903" e_stop="89485" e_length="419"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89484" i_stop="89408" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89407" e_stop="89187" e_length="221"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="89186" i_stop="89090" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89089" e_stop="88972" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="88971" i_stop="88879" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88878" e_stop="88652" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89903" stop="89485"/>
              <exon start="89407" stop="89187"/>
              <exon start="89089" stop="88972"/>
              <exon start="88878" stop="88652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575143" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGTTTTTTTTTTTTGGCTTTCTTTTCTTGTTATTTTTCTTTCAAGAGTAAAAATTAGAGAGGAAGTTGGAGACATTTGGATTCGTCCTTGTGTCTCCTCTACCTCTCATAATTTTTCTCCCAACTTTTTAGCTCAAAAAAGATACAGTGAATCTGTCAAATATACAAAAAAAGAAAAAGTTTAGTTCTTTTTGAGTTTCTCTTGCTTTATTTCATGAATTTTGGGGGTTTTCTTGATAATAATTCTGGTGGTGGCGGTGCAAGAATTGTTGCTGATATACCATTTAATCACAACAACAGCAGCAGCAACAACGACAATAAAAACAATATGCCCACTGGTGCAATTTCTCAGCCAAGACTTCTTCCTCAATCTCTTGCCAAGAACATGTTCAACTCCCCAGGACTTTCTCTTGCTCTT : CAAACAGGTATGGAAGGGCAAAGTGAGGTAACAAGAATGGCTGAAAACTACGAGGGAAATAACAGTGTTGGTAGAAGGAGTAGAGAAGAAGAACCAGACAGCAGATCTGGAAGTGATAACTTGGAAGGTGCATCGGGTGATGAACAAGATGCTACCGACAAACCACCAAGGAAGAAAAGATACCACCGACACACTCCTCAGCAAATCCAAGAACTTGAATC : TCTTTTCAAGGAGTGTCCTCATCCTGATGAGAAACAAAGGTTGGAGTTAAGCAAAAGGCTTTCTTTGGAGACTAGACAAGTCAAGTTTTGGTTCCAAAATCGTAGAACTCAGATGAAG : ACTCAACTGGAACGCCATGAGAATTCGATACTAAGGCAAGAGAATGATAAGCTTCGTGCAGAAAACATGTCTATAAGAGAGGCAATGAGAAATCCAATTTGTACTAATTGTGGTGGTCCAGCAATGATTGGTGAGATCTCTCTTGAGGAGCAACATCTTAGGATTGAAAATGCTAGGCTGAAAGATGAATTAGATCGAGTTTGTGCACTTGCTGGCAAGTTTTTGGG</gDNA_template>
            <first_frame> R  V  F  F  F  W  L  S  F  L  V  I  F  L  S  R  V  K  I  R  E  E  V  G  D  I  W  I  R  P  C  V  S  S  T  S  H  N  F  S  P  N  F  L  A  Q  K  R  Y  S  E  S  V  K  Y  T  K  K  E  K  V  *  F  F  L  S  F  S  C  F  I  S  *  I  L  G  V  F  L  I  I  I  L  V  V  A  V  Q  E  L  L  L  I  Y  H  L  I  T  T  T  A  A  A  T  T  T  I  K  T  I  C  P  L  V  Q  F  L  S  Q  D  F  F  L  N  L  L  P  R  T  C  S  T  P  Q  D  F  L  L  L  F :   K  Q  V  W  K  G  K  V  R  *  Q  E  W  L  K  T  T  R  E  I  T  V  L  V  E  G  V  E  K  K  N  Q  T  A  D  L  E  V  I  T  W  K  V  H  R  V  M  N  K  M  L  P  T  N  H  Q  G  R  K  D  T  T  D  T  L  L  S  K  S  K  N  L  N   : L  F  S  R  S  V  L  I  L  M  R  N  K  G  W  S  *  A  K  G  F  L  W  R  L  D  K  S  S  F  G  S  K  I  V  E  L  R  *  R :   L  N  W  N  A  M  R  I  R  Y  *  G  K  R  M  I  S  F  V  Q  K  T  C  L  *  E  R  Q  *  E  I  Q  F  V  L  I  V  V  V  Q  Q  *  L  V  R  S  L  L  R  S  N  I  L  G  L  K  M  L  G  *  K  M  N  *  I  E  F  V  H  L  L  A  S  F  W  </first_frame>
            <second_frame>  G  F  F  F  F  G  F  L  F  L  L  F  F  F  Q  E  *  K  L  E  R  K  L  E  T  F  G  F  V  L  V  S  P  L  P  L  I  I  F  L  P  T  F  *  L  K  K  D  T  V  N  L  S  N  I  Q  K  K  K  K  F  S  S  F  *  V  S  L  A  L  F  H  E  F  W  G  F  S  *  *  *  F  W  W  W  R  C  K  N  C  C  *  Y  T  I  *  S  Q  Q  Q  Q  Q  Q  Q  R  Q  *  K  Q  Y  A  H  W  C  N  F  S  A  K  T  S  S  S  I  S  C  Q  E  H  V  Q  L  P  R  T  F  S  C  S   : S  N  R  Y  G  R  A  K  *  G  N  K  N  G  *  K  L  R  G  K  *  Q  C  W  *  K  E  *  R  R  R  T  R  Q  Q  I  W  K  *  *  L  G  R  C  I  G  *  *  T  R  C  Y  R  Q  T  T  K  E  E  K  I  P  P  T  H  S  S  A  N  P  R  T  *  I  :  S  F  Q  G  V  S  S  S  *  *  E  T  K  V  G  V  K  Q  K  A  F  F  G  D  *  T  S  Q  V  L  V  P  K  S  *  N  S  D  E   : D  S  T  G  T  P  *  E  F  D  T  K  A  R  E  *  *  A  S  C  R  K  H  V  Y  K  R  G  N  E  K  S  N  L  Y  *  L  W  W  S  S  N  D  W  *  D  L  S  *  G  A  T  S  *  D  *  K  C  *  A  E  R  *  I  R  S  S  L  C  T  C  W  Q  V  F  G </second_frame>
            <third_frame>   G  F  F  F  L  A  F  F  S  C  Y  F  S  F  K  S  K  N  *  R  G  S  W  R  H  L  D  S  S  L  C  L  L  Y  L  S  *  F  F  S  Q  L  F  S  S  K  K  I  Q  *  I  C  Q  I  Y  K  K  R  K  S  L  V  L  F  E  F  L  L  L  Y  F  M  N  F  G  G  F  L  D  N  N  S  G  G  G  G  A  R  I  V  A  D  I  P  F  N  H  N  N  S  S  S  N  N  D  N  K  N  N  M  P  T  G  A  I  S  Q  P  R  L  L  P  Q  S  L  A  K  N  M  F  N  S  P  G  L  S  L  A  L  :  Q  T  G  M  E  G  Q  S  E  V  T  R  M  A  E  N  Y  E  G  N  N  S  V  G  R  R  S  R  E  E  E  P  D  S  R  S  G  S  D  N  L  E  G  A  S  G  D  E  Q  D  A  T  D  K  P  P  R  K  K  R  Y  H  R  H  T  P  Q  Q  I  Q  E  L  E  S :   L  F  K  E  C  P  H  P  D  E  K  Q  R  L  E  L  S  K  R  L  S  L  E  T  R  Q  V  K  F  W  F  Q  N  R  R  T  Q  M  K  :  T  Q  L  E  R  H  E  N  S  I  L  R  Q  E  N  D  K  L  R  A  E  N  M  S  I  R  E  A  M  R  N  P  I  C  T  N  C  G  G  P  A  M  I  G  E  I  S  L  E  E  Q  H  L  R  I  E  N  A  R  L  K  D  E  L  D  R  V  C  A  L  A  G  K  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89751" stop="89485"/>
                    <exon start="89407" stop="89187"/>
                    <exon start="89089" stop="88972"/>
                    <exon start="88878" stop="88654"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICQIYKKRKSLVLFEFLLLYFMNFGGFLDNNSGGGGARIVADIPFNHNNSSSNNDNKNNMPTGAISQPRLLPQSLAKNMFNSPGLSLALQTGMEGQSEVTRMAENYEGNNSVGRRSREEEPDSRSGSDNLEGASGDEQDATDKPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLSLETRQVKFWFQNRRTQMKTQLERHENSILRQENDKLRAENMSIREAMRNPICTNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALAGKFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="90406" PGL_stop="89926"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90406" e_stop="89926"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="90406" e_stop="89926" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90406" stop="89926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584972" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGAGTCAACCAAACCTTTTTCTGTGCTGTTTTGGCTGTATGTATATGTAAGGCTTCGATGAGTCCACAATTTTGCGTATTATCTTCACCTTTTTTTTTTTGGTTTTTAGTATTATTTTTTTCTACTGTTGTTACCCCTTTTTCTATCTCTCGTCTCTTCTATTGTCTTTGCAAAACTGATTAAACAAAGCCTTTTTAGCTTCTTTTTCTCTCACTTCCTTTTCTGTGCTTTATTTTTTATTTTTTTGGTTTACAAAAGTCAAGCATGCAGAGATACATACATATAACAGAACAGAAAAATGCCCTCTAACTTAGGGTTTTGCTTGCTTAAACCATTCTTTTAAGTATCTATGCTTTTGTATTTGCAGTTAATGATTAGTTTAAGAAAGGTCCCTTTTTTTTTTTTACTGTTTTGTTAGGAGGGAGAGAAGAGAAATTTTAATTAGTACTGTTATTTAAGGAAAGTATAGAGAAGAGAA</gDNA_template>
            <first_frame> E  R  V  N  Q  T  F  F  C  A  V  L  A  V  C  I  C  K  A  S  M  S  P  Q  F  C  V  L  S  S  P  F  F  F  W  F  L  V  L  F  F  S  T  V  V  T  P  F  S  I  S  R  L  F  Y  C  L  C  K  T  D  *  T  K  P  F  *  L  L  F  L  S  L  P  F  L  C  F  I  F  Y  F  F  G  L  Q  K  S  S  M  Q  R  Y  I  H  I  T  E  Q  K  N  A  L  *  L  R  V  L  L  A  *  T  I  L  L  S  I  Y  A  F  V  F  A  V  N  D  *  F  K  K  G  P  F  F  F  F  T  V  L  L  G  G  R  E  E  K  F  *  L  V  L  L  F  K  E  S  I  E  K  R  </first_frame>
            <second_frame>  K  E  S  T  K  P  F  S  V  L  F  W  L  Y  V  Y  V  R  L  R  *  V  H  N  F  A  Y  Y  L  H  L  F  F  F  G  F  *  Y  Y  F  F  L  L  L  L  P  L  F  L  S  L  V  S  S  I  V  F  A  K  L  I  K  Q  S  L  F  S  F  F  F  S  H  F  L  F  C  A  L  F  F  I  F  L  V  Y  K  S  Q  A  C  R  D  T  Y  I  *  Q  N  R  K  M  P  S  N  L  G  F  C  L  L  K  P  F  F  *  V  S  M  L  L  Y  L  Q  L  M  I  S  L  R  K  V  P  F  F  F  L  L  F  C  *  E  G  E  K  R  N  F  N  *  Y  C  Y  L  R  K  V  *  R  R  E </second_frame>
            <third_frame>   K  S  Q  P  N  L  F  L  C  C  F  G  C  M  Y  M  *  G  F  D  E  S  T  I  L  R  I  I  F  T  F  F  F  L  V  F  S  I  I  F  F  Y  C  C  Y  P  F  F  Y  L  S  S  L  L  L  S  L  Q  N  *  L  N  K  A  F  L  A  S  F  S  L  T  S  F  S  V  L  Y  F  L  F  F  W  F  T  K  V  K  H  A  E  I  H  T  Y  N  R  T  E  K  C  P  L  T  *  G  F  A  C  L  N  H  S  F  K  Y  L  C  F  C  I  C  S  *  *  L  V  *  E  R  S  L  F  F  F  Y  C  F  V  R  R  E  R  R  E  I  L  I  S  T  V  I  *  G  K  Y  R  E  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01SLm0026F20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="103756" PGL_stop="98561"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103756" e_stop="103753"/>
            <exon e_start="103669" e_stop="103459"/>
            <exon e_start="103376" e_stop="103115"/>
            <exon e_start="102935" e_stop="102561"/>
            <exon e_start="102197" e_stop="102102"/>
            <exon e_start="99277" e_stop="98561"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="0.750"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.338" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="103756" e_stop="103753" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="103752" i_stop="103670" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103669" e_stop="103459" e_length="211"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103458" i_stop="103377" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103376" e_stop="103115" e_length="262"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="103114" i_stop="102936" i_length="179"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102935" e_stop="102561" e_length="375"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="102560" i_stop="102198" i_length="363"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102197" e_stop="102102" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.338">
            <gDNA_intron_boundary i_start="102101" i_stop="99278" i_length="2824"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="99277" e_stop="98561" e_length="717"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103756" stop="103753"/>
              <exon start="103669" stop="103459"/>
              <exon start="103376" stop="103115"/>
              <exon start="102935" stop="102561"/>
              <exon start="102197" stop="102102"/>
              <exon start="99277" stop="98561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570639" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGG : GTGGCTAGTTTTGGTGGCTATCTACTTTCTGAAGAGATTTTGACACTCTCTTTTGCTCCAAGAGATTCACATAAATCACAAATACAGTTTGCCTTGGAACGAGGAATACCTGCATTTGTTGCCATGCTTGGGACACGCAGGCTTCCGTTTCCTGCCTTCTCGTTTGATTTGGTTCATTGTTCACGGTGTTTGATTCCTTTTACTGCGTATA : ATGCTTCATACTTCATTGAAGTTGACCGGTTACTCCGTCCTGGAGGCCACCTTGTCATTTCTGGTCCTCCCGTTCAGTGGCCCAAGCAAGATAAGGAGTGGGCGGATCTCCAAACAGTGGCCAGATCGTTGTGCTATGAGCTGATTGTTGTAGATGGAAACACTGCCATTTGGAAAAAGCCTCAAGGGGATTCATGTGTTCCTATTCAAAATGAATTTGGGCTTGAGCTGTGTGATGAATCAGTAGATCCAAGTGCTGCATG : GTACTTCAAGTTGAAAAAATGTGTGACTAGGACTTCATCTTCCAAAGGAGAATTTGCCATTGGGAAAATTCCAAAATGGCCAGCGAGGCTGATGAAAGCTCCTTCGAGGGCAATTGTAACTAAAAATGGAGTGGATGTGTTTGAAGCTGACTCAAGAAGATGGGCGCGGAGAGTCGCACATTATAAGAGTTCATTGAACTTGAAACTAGGAACTTCATCAGTTCGTAATGTCATGGACATGAATGCATTTTTTGGAGGATTTGCTGCAGCATTATCATCAGACCCAATCTGGGTGATGAATGTTGTTCCAGCACAAAAGCCTTTAACACTTGATGTCATTTATGACAGAGGCCTTATTGGAGTTTACCACGACTG : GTGTGAGCCTTTCTCAACATATCCTCGGACTTATGATCTGATTCACGTGGGAGCCATAGAATCTCTCATAAAGGATCCCGTTTCCGGCAAGATCAG : GTGCAGCCTTGTCGATTTGATGGTGGAAATTGATAGAATTCTTCGGCCTGAAGGAACTGTTATAATTCGGGACTCTCCTGAAGTGATAGACAAAGTAGAGCGTATTGCTCCTGCTGTAAGATGGACGGCAAGTATTCATGAGAAAGAACCTGAATCACATGGAAGGGAGAAAATCTTGGTAGCCACGAAGAATTTTTGGAAGCTACCTTCTTCATCCTACTGATTGATCCTTTGGTTTTTGTAATGTAGGTATATCCTTTTTGTCTCATTATTAAGTCCCAATAACTTGTTTCAAATGATGCATCTATTCTACTTCTTTCTTGTCTCTTCAATTAGCTTATGTAGAATTAAATGGAAGTGTACAAGGATGAGGGAAACTGTAAATTCTTTTTTTATAGTATCACTGCTACAAACTCTCCTAACTTCTTTGGTATTAGAAAATGACCAGCCAGGTGGCTTCTTGTTCACCAGAGTTGGCAAAAGTTGCATGGTATGAAGTGGCAATAACTAGTTGCTGCATCATATTTATACTATATTTGGAGGGCAATGACATTGGCTTCTCATTTCTTGCTTGACTATGTTCAGTCCTTTCATTTCCCTATTTCTTTTGTTTCTTTTACATCATATATGGACACCTCTGTGTGCATAGCAGCTTTGTTTTACTTGCATATGTATTACATCTCGAAAAATTTGAATGTTTATAAGTAGTCATTTTAG</gDNA_template>
            <first_frame> W   : G  G  *  F  W  W  L  S  T  F  *  R  D  F  D  T  L  F  C  S  K  R  F  T  *  I  T  N  T  V  C  L  G  T  R  N  T  C  I  C  C  H  A  W  D  T  Q  A  S  V  S  C  L  L  V  *  F  G  S  L  F  T  V  F  D  S  F  Y  C  V  * :   C  F  I  L  H  *  S  *  P  V  T  P  S  W  R  P  P  C  H  F  W  S  S  R  S  V  A  Q  A  R  *  G  V  G  G  S  P  N  S  G  Q  I  V  V  L  *  A  D  C  C  R  W  K  H  C  H  L  E  K  A  S  R  G  F  M  C  S  Y  S  K  *  I  W  A  *  A  V  *  *  I  S  R  S  K  C  C  M  :  V  L  Q  V  E  K  M  C  D  *  D  F  I  F  Q  R  R  I  C  H  W  E  N  S  K  M  A  S  E  A  D  E  S  S  F  E  G  N  C  N  *  K  W  S  G  C  V  *  S  *  L  K  K  M  G  A  E  S  R  T  L  *  E  F  I  E  L  E  T  R  N  F  I  S  S  *  C  H  G  H  E  C  I  F  W  R  I  C  C  S  I  I  I  R  P  N  L  G  D  E  C  C  S  S  T  K  A  F  N  T  *  C  H  L  *  Q  R  P  Y  W  S  L  P  R  L  :  V  *  A  F  L  N  I  S  S  D  L  *  S  D  S  R  G  S  H  R  I  S  H  K  G  S  R  F  R  Q  D  Q  :  V  Q  P  C  R  F  D  G  G  N  *  *  N  S  S  A  *  R  N  C  Y  N  S  G  L  S  *  S  D  R  Q  S  R  A  Y  C  S  C  C  K  M  D  G  K  Y  S  *  E  R  T  *  I  T  W  K  G  E  N  L  G  S  H  E  E  F  L  E  A  T  F  F  I  L  L  I  D  P  L  V  F  V  M  *  V  Y  P  F  C  L  I  I  K  S  Q  *  L  V  S  N  D  A  S  I  L  L  L  S  C  L  F  N  *  L  M  *  N  *  M  E  V  Y  K  D  E  G  N  C  K  F  F  F  Y  S  I  T  A  T  N  S  P  N  F  F  G  I  R  K  *  P  A  R  W  L  L  V  H  Q  S  W  Q  K  L  H  G  M  K  W  Q  *  L  V  A  A  S  Y  L  Y  Y  I  W  R  A  M  T  L  A  S  H  F  L  L  D  Y  V  Q  S  F  H  F  P  I  S  F  V  S  F  T  S  Y  M  D  T  S  V  C  I  A  A  L  F  Y  L  H  M  Y  Y  I  S  K  N  L  N  V  Y  K  *  S  F  * </first_frame>
            <second_frame>  G  :  V  A  S  F  G  G  Y  L  L  S  E  E  I  L  T  L  S  F  A  P  R  D  S  H  K  S  Q  I  Q  F  A  L  E  R  G  I  P  A  F  V  A  M  L  G  T  R  R  L  P  F  P  A  F  S  F  D  L  V  H  C  S  R  C  L  I  P  F  T  A  Y   : N  A  S  Y  F  I  E  V  D  R  L  L  R  P  G  G  H  L  V  I  S  G  P  P  V  Q  W  P  K  Q  D  K  E  W  A  D  L  Q  T  V  A  R  S  L  C  Y  E  L  I  V  V  D  G  N  T  A  I  W  K  K  P  Q  G  D  S  C  V  P  I  Q  N  E  F  G  L  E  L  C  D  E  S  V  D  P  S  A  A  W :   Y  F  K  L  K  K  C  V  T  R  T  S  S  S  K  G  E  F  A  I  G  K  I  P  K  W  P  A  R  L  M  K  A  P  S  R  A  I  V  T  K  N  G  V  D  V  F  E  A  D  S  R  R  W  A  R  R  V  A  H  Y  K  S  S  L  N  L  K  L  G  T  S  S  V  R  N  V  M  D  M  N  A  F  F  G  G  F  A  A  A  L  S  S  D  P  I  W  V  M  N  V  V  P  A  Q  K  P  L  T  L  D  V  I  Y  D  R  G  L  I  G  V  Y  H  D  W :   C  E  P  F  S  T  Y  P  R  T  Y  D  L  I  H  V  G  A  I  E  S  L  I  K  D  P  V  S  G  K  I  R :   C  S  L  V  D  L  M  V  E  I  D  R  I  L  R  P  E  G  T  V  I  I  R  D  S  P  E  V  I  D  K  V  E  R  I  A  P  A  V  R  W  T  A  S  I  H  E  K  E  P  E  S  H  G  R  E  K  I  L  V  A  T  K  N  F  W  K  L  P  S  S  S  Y  *  L  I  L  W  F  L  *  C  R  Y  I  L  F  V  S  L  L  S  P  N  N  L  F  Q  M  M  H  L  F  Y  F  F  L  V  S  S  I  S  L  C  R  I  K  W  K  C  T  R  M  R  E  T  V  N  S  F  F  I  V  S  L  L  Q  T  L  L  T  S  L  V  L  E  N  D  Q  P  G  G  F  L  F  T  R  V  G  K  S  C  M  V  *  S  G  N  N  *  L  L  H  H  I  Y  T  I  F  G  G  Q  *  H  W  L  L  I  S  C  L  T  M  F  S  P  F  I  S  L  F  L  L  F  L  L  H  H  I  W  T  P  L  C  A  *  Q  L  C  F  T  C  I  C  I  T  S  R  K  I  *  M  F  I  S  S  H  F   </second_frame>
            <third_frame>   G :   W  L  V  L  V  A  I  Y  F  L  K  R  F  *  H  S  L  L  L  Q  E  I  H  I  N  H  K  Y  S  L  P  W  N  E  E  Y  L  H  L  L  P  C  L  G  H  A  G  F  R  F  L  P  S  R  L  I  W  F  I  V  H  G  V  *  F  L  L  L  R  I  :  M  L  H  T  S  L  K  L  T  G  Y  S  V  L  E  A  T  L  S  F  L  V  L  P  F  S  G  P  S  K  I  R  S  G  R  I  S  K  Q  W  P  D  R  C  A  M  S  *  L  L  *  M  E  T  L  P  F  G  K  S  L  K  G  I  H  V  F  L  F  K  M  N  L  G  L  S  C  V  M  N  Q  *  I  Q  V  L  H   : G  T  S  S  *  K  N  V  *  L  G  L  H  L  P  K  E  N  L  P  L  G  K  F  Q  N  G  Q  R  G  *  *  K  L  L  R  G  Q  L  *  L  K  M  E  W  M  C  L  K  L  T  Q  E  D  G  R  G  E  S  H  I  I  R  V  H  *  T  *  N  *  E  L  H  Q  F  V  M  S  W  T  *  M  H  F  L  E  D  L  L  Q  H  Y  H  Q  T  Q  S  G  *  *  M  L  F  Q  H  K  S  L  *  H  L  M  S  F  M  T  E  A  L  L  E  F  T  T  T   : G  V  S  L  S  Q  H  I  L  G  L  M  I  *  F  T  W  E  P  *  N  L  S  *  R  I  P  F  P  A  R  S   : G  A  A  L  S  I  *  W  W  K  L  I  E  F  F  G  L  K  E  L  L  *  F  G  T  L  L  K  *  *  T  K  *  S  V  L  L  L  L  *  D  G  R  Q  V  F  M  R  K  N  L  N  H  M  E  G  R  K  S  W  *  P  R  R  I  F  G  S  Y  L  L  H  P  T  D  *  S  F  G  F  C  N  V  G  I  S  F  L  S  H  Y  *  V  P  I  T  C  F  K  *  C  I  Y  S  T  S  F  L  S  L  Q  L  A  Y  V  E  L  N  G  S  V  Q  G  *  G  K  L  *  I  L  F  L  *  Y  H  C  Y  K  L  S  *  L  L  W  Y  *  K  M  T  S  Q  V  A  S  C  S  P  E  L  A  K  V  A  W  Y  E  V  A  I  T  S  C  C  I  I  F  I  L  Y  L  E  G  N  D  I  G  F  S  F  L  A  *  L  C  S  V  L  S  F  P  Y  F  F  C  F  F  Y  I  I  Y  G  H  L  C  V  H  S  S  F  V  L  L  A  Y  V  L  H  L  E  K  F  E  C  L  *  V  V  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103755" stop="103753"/>
                    <exon start="103669" stop="103459"/>
                    <exon start="103376" stop="103115"/>
                    <exon start="102935" stop="102561"/>
                    <exon start="102197" stop="102102"/>
                    <exon start="99277" stop="99055"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1167</number_coding_nucleotides>
                  <number_encoded_amino_acids>389</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVASFGGYLLSEEILTLSFAPRDSHKSQIQFALERGIPAFVAMLGTRRLPFPAFSFDLVHCSRCLIPFTAYNASYFIEVDRLLRPGGHLVISGPPVQWPKQDKEWADLQTVARSLCYELIVVDGNTAIWKKPQGDSCVPIQNEFGLELCDESVDPSAAWYFKLKKCVTRTSSSKGEFAIGKIPKWPARLMKAPSRAIVTKNGVDVFEADSRRWARRVAHYKSSLNLKLGTSSVRNVMDMNAFFGGFAAALSSDPIWVMNVVPAQKPLTLDVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVGAIESLIKDPVSGKIRCSLVDLMVEIDRILRPEGTVIIRDSPEVIDKVERIAPAVRWTASIHEKEPESHGREKILVATKNFWKLPSSSY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99033" stop="98782"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRYILFVSLLSPNNLFQMMHLFYFFLVSSISLCRIKWKCTRMRETVNSFFIVSLLQTLLTSLVLENDQPGGFLFTRVGKSCMV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98770" stop="98570"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVAASYLYYIWRAMTLASHFLLDYVQSFHFPISFVSFTSYMDTSVCIAALFYLHMYYISKNLNVYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="105873" PGL_stop="103774"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105873" e_stop="105374"/>
            <exon e_start="105295" e_stop="105077"/>
            <exon e_start="103956" e_stop="103774"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.462" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105873" e_stop="105374" e_length="500"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="105373" i_stop="105296" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105295" e_stop="105077" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.462">
            <gDNA_intron_boundary i_start="105076" i_stop="103957" i_length="1120"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="103956" e_stop="103774" e_length="183"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105873" stop="105374"/>
              <exon start="105295" stop="105225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105846" stop="105374"/>
              <exon start="105295" stop="105077"/>
              <exon start="103956" stop="103774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565371" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTATGCTTGCATAGATCTCCATATTCCTCTTTTAAATCCCTTTTTAAGTTTTAAATCACCAAAATGTATGAATGTAAAGAATAACAAATACTAAAAATTAAAGACTAAAAATATCCTGCAAGTTTCTTTAAGCCACACTCACTTGAAAAAGCAAGTACTTGGTACATATGCTTCAGATCTTCAAATCCTTATCTTCCACACTTAAATTTCTGTAAATATACATATCTATATGTGTGTTATTGGATCTTGAAGTTGTATTTTTAACTGCTACTGCTCAAAATACTGAAAATGGGTCACTTAAATCTACCATCATCGAAGCGAAATGTTCGACAATGGCGACTTCTTGATTTGGTTTCAGCAGCTTTCTTTGCAGCAGTCTTGATTTTCTTCCTTCTTCTCTGTACTCCTTTGGGTGATTCTTTGGCTGCTTCAGGCCGCCAGACTCTTCTCCGTTCTGCCTCTGGGGATCCGCGCCAGCGTAGTCGCCTAATTGCTCAG : GTGGAATCAGGGAGACACAACACAGCCATTGATGCATGCTCAGCGGACTATGTGGATTATATGCCTTGTGAAGATCCGAGAATCAATAGCCAATTGAGTAGAGAGATGAATTTTTATAGGGAAAGACATTGTCCATTGCCTAAAGATACACCTCTTTGTTTGATTCCACCGACACAAGGTTACCGCGTTCCTGTTCAGTGGCCTGAGAGTTTGCACAAG : ATTTGGCATGAGAATATGCCATATAATAAAATAGCTGACAGGAAAGGACACCAAGGATGGATGAAAAAGGAAGGGCCATATTTTATCTTTCCTGGTGGTGGAACTATGTTTCCTGACGGAGCTGAGCAGTATATCGAGAAACTTAAACAGTATATTCCGATAGCTGGTGGTGTTTTGAGGACC</gDNA_template>
            <first_frame> N  Y  A  C  I  D  L  H  I  P  L  L  N  P  F  L  S  F  K  S  P  K  C  M  N  V  K  N  N  K  Y  *  K  L  K  T  K  N  I  L  Q  V  S  L  S  H  T  H  L  K  K  Q  V  L  G  T  Y  A  S  D  L  Q  I  L  I  F  H  T  *  I  S  V  N  I  H  I  Y  M  C  V  I  G  S  *  S  C  I  F  N  C  Y  C  S  K  Y  *  K  W  V  T  *  I  Y  H  H  R  S  E  M  F  D  N  G  D  F  L  I  W  F  Q  Q  L  S  L  Q  Q  S  *  F  S  S  F  F  S  V  L  L  W  V  I  L  W  L  L  Q  A  A  R  L  F  S  V  L  P  L  G  I  R  A  S  V  V  A  *  L  L  R :   W  N  Q  G  D  T  T  Q  P  L  M  H  A  Q  R  T  M  W  I  I  C  L  V  K  I  R  E  S  I  A  N  *  V  E  R  *  I  F  I  G  K  D  I  V  H  C  L  K  I  H  L  F  V  *  F  H  R  H  K  V  T  A  F  L  F  S  G  L  R  V  C  T  R :   F  G  M  R  I  C  H  I  I  K  *  L  T  G  K  D  T  K  D  G  *  K  R  K  G  H  I  L  S  F  L  V  V  E  L  C  F  L  T  E  L  S  S  I  S  R  N  L  N  S  I  F  R  *  L  V  V  F  *  G   </first_frame>
            <second_frame>  I  M  L  A  *  I  S  I  F  L  F  *  I  P  F  *  V  L  N  H  Q  N  V  *  M  *  R  I  T  N  T  K  N  *  R  L  K  I  S  C  K  F  L  *  A  T  L  T  *  K  S  K  Y  L  V  H  M  L  Q  I  F  K  S  L  S  S  T  L  K  F  L  *  I  Y  I  S  I  C  V  L  L  D  L  E  V  V  F  L  T  A  T  A  Q  N  T  E  N  G  S  L  K  S  T  I  I  E  A  K  C  S  T  M  A  T  S  *  F  G  F  S  S  F  L  C  S  S  L  D  F  L  P  S  S  L  Y  S  F  G  *  F  F  G  C  F  R  P  P  D  S  S  P  F  C  L  W  G  S  A  P  A  *  S  P  N  C  S   : G  G  I  R  E  T  Q  H  S  H  *  C  M  L  S  G  L  C  G  L  Y  A  L  *  R  S  E  N  Q  *  P  I  E  *  R  D  E  F  L  *  G  K  T  L  S  I  A  *  R  Y  T  S  L  F  D  S  T  D  T  R  L  P  R  S  C  S  V  A  *  E  F  A  Q   : D  L  A  *  E  Y  A  I  *  *  N  S  *  Q  E  R  T  P  R  M  D  E  K  G  R  A  I  F  Y  L  S  W  W  W  N  Y  V  S  *  R  S  *  A  V  Y  R  E  T  *  T  V  Y  S  D  S  W  W  C  F  E  D  </second_frame>
            <third_frame>   L  C  L  H  R  S  P  Y  S  S  F  K  S  L  F  K  F  *  I  T  K  M  Y  E  C  K  E  *  Q  I  L  K  I  K  D  *  K  Y  P  A  S  F  F  K  P  H  S  L  E  K  A  S  T  W  Y  I  C  F  R  S  S  N  P  Y  L  P  H  L  N  F  C  K  Y  T  Y  L  Y  V  C  Y  W  I  L  K  L  Y  F  *  L  L  L  L  K  I  L  K  M  G  H  L  N  L  P  S  S  K  R  N  V  R  Q  W  R  L  L  D  L  V  S  A  A  F  F  A  A  V  L  I  F  F  L  L  L  C  T  P  L  G  D  S  L  A  A  S  G  R  Q  T  L  L  R  S  A  S  G  D  P  R  Q  R  S  R  L  I  A  Q  :  V  E  S  G  R  H  N  T  A  I  D  A  C  S  A  D  Y  V  D  Y  M  P  C  E  D  P  R  I  N  S  Q  L  S  R  E  M  N  F  Y  R  E  R  H  C  P  L  P  K  D  T  P  L  C  L  I  P  P  T  Q  G  Y  R  V  P  V  Q  W  P  E  S  L  H  K  :  I  W  H  E  N  M  P  Y  N  K  I  A  D  R  K  G  H  Q  G  W  M  K  K  E  G  P  Y  F  I  F  P  G  G  G  T  M  F  P  D  G  A  E  Q  Y  I  E  K  L  K  Q  Y  I  P  I  A  G  G  V  L  R  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105607" stop="105374"/>
                    <exon start="105295" stop="105077"/>
                    <exon start="103956" stop="103774"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLLKILKMGHLNLPSSKRNVRQWRLLDLVSAAFFAAVLIFFLLLCTPLGDSLAASGRQTLLRSASGDPRQRSRLIAQVESGRHNTAIDACSADYVDYMPCEDPRINSQLSREMNFYRERHCPLPKDTPLCLIPPTQGYRVPVQWPESLHKIWHENMPYNKIADRKGHQGWMKKEGPYFIFPGGGTMFPDGAEQYIEKLKQYIPIAGGVLRT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="112195" PGL_stop="107194"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112195" e_stop="111697"/>
            <exon e_start="109795" e_stop="109475"/>
            <exon e_start="108957" e_stop="108841"/>
            <exon e_start="108740" e_stop="108655"/>
            <exon e_start="108080" e_stop="107846"/>
            <exon e_start="107741" e_stop="107194"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112195" e_stop="111697" e_length="499"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.981">
            <gDNA_intron_boundary i_start="111696" i_stop="109796" i_length="1901"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109795" e_stop="109475" e_length="321"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="109474" i_stop="108958" i_length="517"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108957" e_stop="108841" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.911">
            <gDNA_intron_boundary i_start="108840" i_stop="108741" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="108740" e_stop="108655" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.950">
            <gDNA_intron_boundary i_start="108654" i_stop="108081" i_length="574"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="108080" e_stop="107846" e_length="235"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="107845" i_stop="107742" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="107741" e_stop="107194" e_length="548"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112195" stop="111697"/>
              <exon start="109795" stop="109475"/>
              <exon start="108957" stop="108841"/>
              <exon start="108740" stop="108655"/>
              <exon start="108080" stop="107846"/>
              <exon start="107741" stop="107194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGCAGGATCTATTCAAGTTTTTTCTTCTCAGTGTATCGCTCCCGGAAGAAGTGGTAACAAGACAGAGCAAAAACCCTAGCTCCGATCAAACATTATACAAATTAATATCCGATGGAGCCTGACGAGGATTTAGGGCTAATAGCCGAAGAGATCTACGCCAACGGCGATGAGAACAAGCAGCGTCATCGGCCGATTATCAGCGGCGAGCAGCTCGATATTGAGGCGTACGCCGCCTTGTACAGTGGCCGGACAAAAATCATGAGGCTTCTCTTCATAGCCGATCGATGTGGCAATGCTTCAATGCAATTGGAGGCTTTGAGAATGGCCTATGATGAGATTAAGAAAGGGGAAAACACACAATTGTTCCGTGAGGTTGTGCAGAAAATCGATGGACGTTTGGGCACTAATTATGGGCCAGACCCTGCTTGGGCTGACTCTGTGGATCGCCGGGCTGATCTGAGGAAGGAGAAGCTTGAGAGCGAACTCAACGCTTATAGG : ACAAATCTGATCAAAGAGAGCATTAGGATGGGATACAATGATTTTGGGGATTTCTACTATGCACATGGACAGCTTGGAGAGGCATTTAAGAATTATGTTCGTACACGTGATTATTGCACGACTGCGAAACACATAATCCATATGTGTTTGAATGCGATTCTGGTCAGCATTGAGATGGGCCAGTTCACACATGTTACAAGCTACGTCAGTAAGGCGGAGCAAAGCCAAGATGCTCTAGATGCTATTACAGTTGCAAAACTTCGTTGTGCTGCTGGGTTGGCTCACTTAGAGGCAAAGAAATATAAGCTTGCTGCTCGAAAG : TTCCTGGAAGTTGGTCCAGAATTAGGTAACAACTACACTGAAGTTATTGCACCCCAAGATGTTGCTACTTATGGTGGACTCTGTGCGCTTGCAAGTTTTGACCGAGCAGAACTGAAG : AGCAAAGTTATTGACAATATAAACTTCAGAAATTTCTTAGAGCTGGTACCCGAGATAAGGGAGCTCATTCATGATTTCTATACAAG : TCACTATGCTTCTTGTCTGGAGTATCTAGGGAATCTTAAAGCAAATCTGTTGCTCGACATCCATTTGCATGATCATGTCGAGACACTGTATGATCAAATCCGTAGCAAAGCTTTGATACAGTATACCCACCCATTTGTCTCGGTTGATTTGAATATGATGGCTAATGCTTTCAAGACGAGTGTTGCCGGGTTGGAAAAGGAACTTGAATCTTTGATCACTGACAACCAAATTCAG : GCTCGAATTGACTCACACAACAAAATTTTGTATGCACGACATGCTGATCAGAGAAATGCAACCTTCCAGAAGGTGCTGCAGACAGGCAAGGAATTCGATCGGGATGTGAGATCAATGCTTTTGAGAGCAAACCTTCTCAAGCATGACTACATTGCTAGAACGTCAAGAAAACATTGAAACGGAGGAGGATGGTAGCACACAGTTTTGTTTTCCTTGATTGCGAGGTTACGTATGCTGCATGAAGTTGACCAGACAATTGTCTACAGAAGTTGGTTGAGTCTTGGAAAGCCATGTCTTTTGGGGGCTCGAGAAATTTTCCTGGATAATAGAGGGGACTGCTGTTCATATTTATAGATTTACCAGTTGCTGGAAAAGTAAATATTTTTTGCCTGGTCCTACTTGCTGCAACCTTTCTCTGTGATGTGTCATCAACGAATGCTAATCCATTTAGTACCTTGTTTTTTTGTTCATTCAAGATGAAAGATTCCATGTAGCCTATATTGTTGATGCTTATACGTATTCATTAATGGTCATTAGTCTTTGAGTTT</gDNA_template>
            <first_frame> V  Q  D  L  F  K  F  F  L  L  S  V  S  L  P  E  E  V  V  T  R  Q  S  K  N  P  S  S  D  Q  T  L  Y  K  L  I  S  D  G  A  *  R  G  F  R  A  N  S  R  R  D  L  R  Q  R  R  *  E  Q  A  A  S  S  A  D  Y  Q  R  R  A  A  R  Y  *  G  V  R  R  L  V  Q  W  P  D  K  N  H  E  A  S  L  H  S  R  S  M  W  Q  C  F  N  A  I  G  G  F  E  N  G  L  *  *  D  *  E  R  G  K  H  T  I  V  P  *  G  C  A  E  N  R  W  T  F  G  H  *  L  W  A  R  P  C  L  G  *  L  C  G  S  P  G  *  S  E  E  G  E  A  *  E  R  T  Q  R  L  *   : D  K  S  D  Q  R  E  H  *  D  G  I  Q  *  F  W  G  F  L  L  C  T  W  T  A  W  R  G  I  *  E  L  C  S  Y  T  *  L  L  H  D  C  E  T  H  N  P  Y  V  F  E  C  D  S  G  Q  H  *  D  G  P  V  H  T  C  Y  K  L  R  Q  *  G  G  A  K  P  R  C  S  R  C  Y  Y  S  C  K  T  S  L  C  C  W  V  G  S  L  R  G  K  E  I  *  A  C  C  S  K   : V  P  G  S  W  S  R  I  R  *  Q  L  H  *  S  Y  C  T  P  R  C  C  Y  L  W  W  T  L  C  A  C  K  F  *  P  S  R  T  E   : E  Q  S  Y  *  Q  Y  K  L  Q  K  F  L  R  A  G  T  R  D  K  G  A  H  S  *  F  L  Y  K  :  S  L  C  F  L  S  G  V  S  R  E  S  *  S  K  S  V  A  R  H  P  F  A  *  S  C  R  D  T  V  *  S  N  P  *  Q  S  F  D  T  V  Y  P  P  I  C  L  G  *  F  E  Y  D  G  *  C  F  Q  D  E  C  C  R  V  G  K  G  T  *  I  F  D  H  *  Q  P  N  S   : G  S  N  *  L  T  Q  Q  N  F  V  C  T  T  C  *  S  E  K  C  N  L  P  E  G  A  A  D  R  Q  G  I  R  S  G  C  E  I  N  A  F  E  S  K  P  S  Q  A  *  L  H  C  *  N  V  K  K  T  L  K  R  R  R  M  V  A  H  S  F  V  F  L  D  C  E  V  T  Y  A  A  *  S  *  P  D  N  C  L  Q  K  L  V  E  S  W  K  A  M  S  F  G  G  S  R  N  F  P  G  *  *  R  G  L  L  F  I  F  I  D  L  P  V  A  G  K  V  N  I  F  C  L  V  L  L  A  A  T  F  L  C  D  V  S  S  T  N  A  N  P  F  S  T  L  F  F  C  S  F  K  M  K  D  S  M  *  P  I  L  L  M  L  I  R  I  H  *  W  S  L  V  F  E  F </first_frame>
            <second_frame>  C  R  I  Y  S  S  F  F  F  S  V  Y  R  S  R  K  K  W  *  Q  D  R  A  K  T  L  A  P  I  K  H  Y  T  N  *  Y  P  M  E  P  D  E  D  L  G  L  I  A  E  E  I  Y  A  N  G  D  E  N  K  Q  R  H  R  P  I  I  S  G  E  Q  L  D  I  E  A  Y  A  A  L  Y  S  G  R  T  K  I  M  R  L  L  F  I  A  D  R  C  G  N  A  S  M  Q  L  E  A  L  R  M  A  Y  D  E  I  K  K  G  E  N  T  Q  L  F  R  E  V  V  Q  K  I  D  G  R  L  G  T  N  Y  G  P  D  P  A  W  A  D  S  V  D  R  R  A  D  L  R  K  E  K  L  E  S  E  L  N  A  Y  R  :  T  N  L  I  K  E  S  I  R  M  G  Y  N  D  F  G  D  F  Y  Y  A  H  G  Q  L  G  E  A  F  K  N  Y  V  R  T  R  D  Y  C  T  T  A  K  H  I  I  H  M  C  L  N  A  I  L  V  S  I  E  M  G  Q  F  T  H  V  T  S  Y  V  S  K  A  E  Q  S  Q  D  A  L  D  A  I  T  V  A  K  L  R  C  A  A  G  L  A  H  L  E  A  K  K  Y  K  L  A  A  R  K  :  F  L  E  V  G  P  E  L  G  N  N  Y  T  E  V  I  A  P  Q  D  V  A  T  Y  G  G  L  C  A  L  A  S  F  D  R  A  E  L  K  :  S  K  V  I  D  N  I  N  F  R  N  F  L  E  L  V  P  E  I  R  E  L  I  H  D  F  Y  T  S :   H  Y  A  S  C  L  E  Y  L  G  N  L  K  A  N  L  L  L  D  I  H  L  H  D  H  V  E  T  L  Y  D  Q  I  R  S  K  A  L  I  Q  Y  T  H  P  F  V  S  V  D  L  N  M  M  A  N  A  F  K  T  S  V  A  G  L  E  K  E  L  E  S  L  I  T  D  N  Q  I  Q  :  A  R  I  D  S  H  N  K  I  L  Y  A  R  H  A  D  Q  R  N  A  T  F  Q  K  V  L  Q  T  G  K  E  F  D  R  D  V  R  S  M  L  L  R  A  N  L  L  K  H  D  Y  I  A  R  T  S  R  K  H  *  N  G  G  G  W  *  H  T  V  L  F  S  L  I  A  R  L  R  M  L  H  E  V  D  Q  T  I  V  Y  R  S  W  L  S  L  G  K  P  C  L  L  G  A  R  E  I  F  L  D  N  R  G  D  C  C  S  Y  L  *  I  Y  Q  L  L  E  K  *  I  F  F  A  W  S  Y  L  L  Q  P  F  S  V  M  C  H  Q  R  M  L  I  H  L  V  P  C  F  F  V  H  S  R  *  K  I  P  C  S  L  Y  C  *  C  L  Y  V  F  I  N  G  H  *  S  L  S   </second_frame>
            <third_frame>   A  G  S  I  Q  V  F  S  S  Q  C  I  A  P  G  R  S  G  N  K  T  E  Q  K  P  *  L  R  S  N  I  I  Q  I  N  I  R  W  S  L  T  R  I  *  G  *  *  P  K  R  S  T  P  T  A  M  R  T  S  S  V  I  G  R  L  S  A  A  S  S  S  I  L  R  R  T  P  P  C  T  V  A  G  Q  K  S  *  G  F  S  S  *  P  I  D  V  A  M  L  Q  C  N  W  R  L  *  E  W  P  M  M  R  L  R  K  G  K  T  H  N  C  S  V  R  L  C  R  K  S  M  D  V  W  A  L  I  M  G  Q  T  L  L  G  L  T  L  W  I  A  G  L  I  *  G  R  R  S  L  R  A  N  S  T  L  I  G :   Q  I  *  S  K  R  A  L  G  W  D  T  M  I  L  G  I  S  T  M  H  M  D  S  L  E  R  H  L  R  I  M  F  V  H  V  I  I  A  R  L  R  N  T  *  S  I  C  V  *  M  R  F  W  S  A  L  R  W  A  S  S  H  M  L  Q  A  T  S  V  R  R  S  K  A  K  M  L  *  M  L  L  Q  L  Q  N  F  V  V  L  L  G  W  L  T  *  R  Q  R  N  I  S  L  L  L  E  S :   S  W  K  L  V  Q  N  *  V  T  T  T  L  K  L  L  H  P  K  M  L  L  L  M  V  D  S  V  R  L  Q  V  L  T  E  Q  N  *  R :   A  K  L  L  T  I  *  T  S  E  I  S  *  S  W  Y  P  R  *  G  S  S  F  M  I  S  I  Q   : V  T  M  L  L  V  W  S  I  *  G  I  L  K  Q  I  C  C  S  T  S  I  C  M  I  M  S  R  H  C  M  I  K  S  V  A  K  L  *  Y  S  I  P  T  H  L  S  R  L  I  *  I  *  W  L  M  L  S  R  R  V  L  P  G  W  K  R  N  L  N  L  *  S  L  T  T  K  F  R :   L  E  L  T  H  T  T  K  F  C  M  H  D  M  L  I  R  E  M  Q  P  S  R  R  C  C  R  Q  A  R  N  S  I  G  M  *  D  Q  C  F  *  E  Q  T  F  S  S  M  T  T  L  L  E  R  Q  E  N  I  E  T  E  E  D  G  S  T  Q  F  C  F  P  *  L  R  G  Y  V  C  C  M  K  L  T  R  Q  L  S  T  E  V  G  *  V  L  E  S  H  V  F  W  G  L  E  K  F  S  W  I  I  E  G  T  A  V  H  I  Y  R  F  T  S  C  W  K  S  K  Y  F  L  P  G  P  T  C  C  N  L  S  L  *  C  V  I  N  E  C  *  S  I  *  Y  L  V  F  L  F  I  Q  D  E  R  F  H  V  A  Y  I  V  D  A  Y  T  Y  S  L  M  V  I  S  L  *  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112089" stop="111697"/>
                    <exon start="109795" stop="109475"/>
                    <exon start="108957" stop="108841"/>
                    <exon start="108740" stop="108655"/>
                    <exon start="108080" stop="107846"/>
                    <exon start="107741" stop="107565"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1326</number_coding_nucleotides>
                  <number_encoded_amino_acids>442</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPMEPDEDLGLIAEEIYANGDENKQRHRPIISGEQLDIEAYAALYSGRTKIMRLLFIADRCGNASMQLEALRMAYDEIKKGENTQLFREVVQKIDGRLGTNYGPDPAWADSVDRRADLRKEKLESELNAYRTNLIKESIRMGYNDFGDFYYAHGQLGEAFKNYVRTRDYCTTAKHIIHMCLNAILVSIEMGQFTHVTSYVSKAEQSQDALDAITVAKLRCAAGLAHLEAKKYKLAARKFLEVGPELGNNYTEVIAPQDVATYGGLCALASFDRAELKSKVIDNINFRNFLELVPEIRELIHDFYTSHYASCLEYLGNLKANLLLDIHLHDHVETLYDQIRSKALIQYTHPFVSVDLNMMANAFKTSVAGLEKELESLITDNQIQARIDSHNKILYARHADQRNATFQKVLQTGKEFDRDVRSMLLRANLLKHDYIARTSRKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="119674" PGL_stop="118778"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119674" e_stop="119563"/>
            <exon e_start="119449" e_stop="118778"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.964"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="119674" e_stop="119563" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119562" i_stop="119450" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="119449" e_stop="118778" e_length="672"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119674" stop="119563"/>
              <exon start="119449" stop="118778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600515" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCAAGAGCGAAAAAATGTCAGAAGAGAGAAGGAGGTTCTAAAAACAATATCTAAGTTATCCGGCGCTGCAGCAAGAAAATTGCTGATTTTCCAATGGCAAATAAGCTCAG : GTTAGAGGGTAAAGTAGCTGTAATAACAGGTGGTGCTAGTGGCATTGGTGAAGCAGCAGCCAGATTGTTCGTTGAACATGGGGCCCGCGTCGTTATTGCGGACATTCAGGATGAACTTGCTCTCCAAGTCGCGTCCTCTATCGGATCAGACAACGTCTGTTACCAACGCTGTGATGTAAGCGATGAGAAACAAGTAAATGAAACTGTCGCATTTGCTGTTGAAAAATACGGTACACTCGATATAATGTTCAGTAATGCCGGCATACTCAACCCATTCGAGAGCATACTCGAAATGGATATGACGGTGTTTGACAGGACGATTGCTGTTAACGCGCGGGGAGCCGCGTTAGCCGTGAAGCACGCGGCTAGAGTGATGGTAGCTAATAAGATCCGCGGCTCCATAATATGTACAGCTAGCGTGGAGTCAATTCTAGCTGGTGCAGCTCCGTTAGCGTACATCGCATCGAAGCACGCCGTCCTCGGCGTAGTGAAAGCTGCGGCGCGTGAGCTGGGGCAACATGGAATACGAGTGAATTGTGTATCGCCTTTCGGCATAGCGACGCCGATGGTGTGCAAATCGTTTGGCGCTGATGCGGCGGCTATTGAAGCTAAAATATGTGGAAATGCAAACTTGAAAGGTGTTTCTTTAACCACAATGCATATAGCAGAAGC</gDNA_template>
            <first_frame> I  Q  E  R  K  N  V  R  R  E  K  E  V  L  K  T  I  S  K  L  S  G  A  A  A  R  K  L  L  I  F  Q  W  Q  I  S  S   : G  *  R  V  K  *  L  *  *  Q  V  V  L  V  A  L  V  K  Q  Q  P  D  C  S  L  N  M  G  P  A  S  L  L  R  T  F  R  M  N  L  L  S  K  S  R  P  L  S  D  Q  T  T  S  V  T  N  A  V  M  *  A  M  R  N  K  *  M  K  L  S  H  L  L  L  K  N  T  V  H  S  I  *  C  S  V  M  P  A  Y  S  T  H  S  R  A  Y  S  K  W  I  *  R  C  L  T  G  R  L  L  L  T  R  G  E  P  R  *  P  *  S  T  R  L  E  *  W  *  L  I  R  S  A  A  P  *  Y  V  Q  L  A  W  S  Q  F  *  L  V  Q  L  R  *  R  T  S  H  R  S  T  P  S  S  A  *  *  K  L  R  R  V  S  W  G  N  M  E  Y  E  *  I  V  Y  R  L  S  A  *  R  R  R  W  C  A  N  R  L  A  L  M  R  R  L  L  K  L  K  Y  V  E  M  Q  T  *  K  V  F  L  *  P  Q  C  I  *  Q  K  </first_frame>
            <second_frame>  S  K  S  E  K  M  S  E  E  R  R  R  F  *  K  Q  Y  L  S  Y  P  A  L  Q  Q  E  N  C  *  F  S  N  G  K  *  A  Q  :  V  R  G  *  S  S  C  N  N  R  W  C  *  W  H  W  *  S  S  S  Q  I  V  R  *  T  W  G  P  R  R  Y  C  G  H  S  G  *  T  C  S  P  S  R  V  L  Y  R  I  R  Q  R  L  L  P  T  L  *  C  K  R  *  E  T  S  K  *  N  C  R  I  C  C  *  K  I  R  Y  T  R  Y  N  V  Q  *  C  R  H  T  Q  P  I  R  E  H  T  R  N  G  Y  D  G  V  *  Q  D  D  C  C  *  R  A  G  S  R  V  S  R  E  A  R  G  *  S  D  G  S  *  *  D  P  R  L  H  N  M  Y  S  *  R  G  V  N  S  S  W  C  S  S  V  S  V  H  R  I  E  A  R  R  P  R  R  S  E  S  C  G  A  *  A  G  A  T  W  N  T  S  E  L  C  I  A  F  R  H  S  D  A  D  G  V  Q  I  V  W  R  *  C  G  G  Y  *  S  *  N  M  W  K  C  K  L  E  R  C  F  F  N  H  N  A  Y  S  R  S </second_frame>
            <third_frame>   P  R  A  K  K  C  Q  K  R  E  G  G  S  K  N  N  I  *  V  I  R  R  C  S  K  K  I  A  D  F  P  M  A  N  K  L  R :   L  E  G  K  V  A  V  I  T  G  G  A  S  G  I  G  E  A  A  A  R  L  F  V  E  H  G  A  R  V  V  I  A  D  I  Q  D  E  L  A  L  Q  V  A  S  S  I  G  S  D  N  V  C  Y  Q  R  C  D  V  S  D  E  K  Q  V  N  E  T  V  A  F  A  V  E  K  Y  G  T  L  D  I  M  F  S  N  A  G  I  L  N  P  F  E  S  I  L  E  M  D  M  T  V  F  D  R  T  I  A  V  N  A  R  G  A  A  L  A  V  K  H  A  A  R  V  M  V  A  N  K  I  R  G  S  I  I  C  T  A  S  V  E  S  I  L  A  G  A  A  P  L  A  Y  I  A  S  K  H  A  V  L  G  V  V  K  A  A  A  R  E  L  G  Q  H  G  I  R  V  N  C  V  S  P  F  G  I  A  T  P  M  V  C  K  S  F  G  A  D  A  A  A  I  E  A  K  I  C  G  N  A  N  L  K  G  V  S  L  T  T  M  H  I  A  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119618" stop="119563"/>
                    <exon start="119449" stop="118780"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIRRCSKKIADFPMANKLRLEGKVAVITGGASGIGEAAARLFVEHGARVVIADIQDELALQVASSIGSDNVCYQRCDVSDEKQVNETVAFAVEKYGTLDIMFSNAGILNPFESILEMDMTVFDRTIAVNARGAALAVKHAARVMVANKIRGSIICTASVESILAGAAPLAYIASKHAVLGVVKAAARELGQHGIRVNCVSPFGIATPMVCKSFGADAAAIEAKICGNANLKGVSLTTMHIAE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="126686" PGL_stop="127921"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126686" e_stop="126782"/>
            <exon e_start="126914" e_stop="127921"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.963" e_score="0.959"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="126686" e_stop="126782" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.963">
            <gDNA_intron_boundary i_start="126783" i_stop="126913" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="126914" e_stop="127921" e_length="1008"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126686" stop="126782"/>
              <exon start="126914" stop="127921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582327" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACAACACCTAATTAACGAGTTCATACTTTTGCCAATCAGCACACTTTCTTAGAATGAACTGGTGGTTGTCAAGATCCATCCATAATGCACAGCAG : AAAAATGTTGAGTATCGCGGAACACATGAAAATGTTGGCCTTATTATTGGAGTGACTGGTGTAGTTGGCAACAGTTTGGCTGGAACACTCTCATCCACTGACACCCCAGGCGGCCCGTGGAAGATCTACGGTGTGTCAAGACGAGGGACGCCAGTCTGTAGCATTGCTAAAGTCACATACATTCAATGCGATGTCTCTAAATCAACTGATGTACAAGCCAAATTATCGACCCTAAAAGATGTGACACACATCTTTTGGGTGACTTCGGCTTTTGACCTTTCCACTTCCAAATGTTGTGAAATCAATGGAACAATGTTTCGTAATGTCCTCACCTGTGTCATACCAAATGCACCTAATTTACGCCACATCTGTCTCCAGACGGGCGGGATGCATTATATGGAAATTCACAGATCAATTGATGGGAAACTCTGTGTAACTTCTCATGATCCGCCTTTCCATGAAGACATGAAAAGATTGGAAAACGTTCACAACTTCTACTACACGTTAGAAGATGTATTGTTCGATGAAGTATCTAGAAAACCAACCCTAACATGGTCCGTCCATAGACCTGATTTGATTTTCGGGTTTTCACCTTATAGCACGTTGAACATTATTGGAACACTTTGTGTATACGCAACGATATGCAAATTCATACACATCCCGATGAAGTTTCCAGGTACAGAAGCTGTTTGGGATAGTTATTCGAATGCATCAGATGCTAATTTGGTGGCAGAGCATCAAATTTGGGCAGCAATGTGTGCACAGGGGAAAAACAGGGCATTCAACATTACTAACGGTGATGTGTTCAAATGGAAGCATTTGTGGAAGGTATTGGCGGAAGAAATTGGAGTTGAATATGTGGAATTCAACGCGACGGAGAAGATTATTTCATTGTCCGAGATGATGAAGGATAAGGGGCCTGTGTGGGATAAGATTGTGAAAGACAATAAGTTGATTCCGACAAAGTTAGAAGAGGTTGGATTGTGGGGTTTTGCAGATATGTTACTA</gDNA_template>
            <first_frame> K  Q  H  L  I  N  E  F  I  L  L  P  I  S  T  L  S  *  N  E  L  V  V  V  K  I  H  P  *  C  T  A   : E  K  C  *  V  S  R  N  T  *  K  C  W  P  Y  Y  W  S  D  W  C  S  W  Q  Q  F  G  W  N  T  L  I  H  *  H  P  R  R  P  V  E  D  L  R  C  V  K  T  R  D  A  S  L  *  H  C  *  S  H  I  H  S  M  R  C  L  *  I  N  *  C  T  S  Q  I  I  D  P  K  R  C  D  T  H  L  L  G  D  F  G  F  *  P  F  H  F  Q  M  L  *  N  Q  W  N  N  V  S  *  C  P  H  L  C  H  T  K  C  T  *  F  T  P  H  L  S  P  D  G  R  D  A  L  Y  G  N  S  Q  I  N  *  W  E  T  L  C  N  F  S  *  S  A  F  P  *  R  H  E  K  I  G  K  R  S  Q  L  L  L  H  V  R  R  C  I  V  R  *  S  I  *  K  T  N  P  N  M  V  R  P  *  T  *  F  D  F  R  V  F  T  L  *  H  V  E  H  Y  W  N  T  L  C  I  R  N  D  M  Q  I  H  T  H  P  D  E  V  S  R  Y  R  S  C  L  G  *  L  F  E  C  I  R  C  *  F  G  G  R  A  S  N  L  G  S  N  V  C  T  G  E  K  Q  G  I  Q  H  Y  *  R  *  C  V  Q  M  E  A  F  V  E  G  I  G  G  R  N  W  S  *  I  C  G  I  Q  R  D  G  E  D  Y  F  I  V  R  D  D  E  G  *  G  A  C  V  G  *  D  C  E  R  Q  *  V  D  S  D  K  V  R  R  G  W  I  V  G  F  C  R  Y  V  T  </first_frame>
            <second_frame>  N  N  T  *  L  T  S  S  Y  F  C  Q  S  A  H  F  L  R  M  N  W  W  L  S  R  S  I  H  N  A  Q  Q  :  K  N  V  E  Y  R  G  T  H  E  N  V  G  L  I  I  G  V  T  G  V  V  G  N  S  L  A  G  T  L  S  S  T  D  T  P  G  G  P  W  K  I  Y  G  V  S  R  R  G  T  P  V  C  S  I  A  K  V  T  Y  I  Q  C  D  V  S  K  S  T  D  V  Q  A  K  L  S  T  L  K  D  V  T  H  I  F  W  V  T  S  A  F  D  L  S  T  S  K  C  C  E  I  N  G  T  M  F  R  N  V  L  T  C  V  I  P  N  A  P  N  L  R  H  I  C  L  Q  T  G  G  M  H  Y  M  E  I  H  R  S  I  D  G  K  L  C  V  T  S  H  D  P  P  F  H  E  D  M  K  R  L  E  N  V  H  N  F  Y  Y  T  L  E  D  V  L  F  D  E  V  S  R  K  P  T  L  T  W  S  V  H  R  P  D  L  I  F  G  F  S  P  Y  S  T  L  N  I  I  G  T  L  C  V  Y  A  T  I  C  K  F  I  H  I  P  M  K  F  P  G  T  E  A  V  W  D  S  Y  S  N  A  S  D  A  N  L  V  A  E  H  Q  I  W  A  A  M  C  A  Q  G  K  N  R  A  F  N  I  T  N  G  D  V  F  K  W  K  H  L  W  K  V  L  A  E  E  I  G  V  E  Y  V  E  F  N  A  T  E  K  I  I  S  L  S  E  M  M  K  D  K  G  P  V  W  D  K  I  V  K  D  N  K  L  I  P  T  K  L  E  E  V  G  L  W  G  F  A  D  M  L  L </second_frame>
            <third_frame>   T  T  P  N  *  R  V  H  T  F  A  N  Q  H  T  F  L  E  *  T  G  G  C  Q  D  P  S  I  M  H  S  R :   K  M  L  S  I  A  E  H  M  K  M  L  A  L  L  L  E  *  L  V  *  L  A  T  V  W  L  E  H  S  H  P  L  T  P  Q  A  A  R  G  R  S  T  V  C  Q  D  E  G  R  Q  S  V  A  L  L  K  S  H  T  F  N  A  M  S  L  N  Q  L  M  Y  K  P  N  Y  R  P  *  K  M  *  H  T  S  F  G  *  L  R  L  L  T  F  P  L  P  N  V  V  K  S  M  E  Q  C  F  V  M  S  S  P  V  S  Y  Q  M  H  L  I  Y  A  T  S  V  S  R  R  A  G  C  I  I  W  K  F  T  D  Q  L  M  G  N  S  V  *  L  L  M  I  R  L  S  M  K  T  *  K  D  W  K  T  F  T  T  S  T  T  R  *  K  M  Y  C  S  M  K  Y  L  E  N  Q  P  *  H  G  P  S  I  D  L  I  *  F  S  G  F  H  L  I  A  R  *  T  L  L  E  H  F  V  Y  T  Q  R  Y  A  N  S  Y  T  S  R  *  S  F  Q  V  Q  K  L  F  G  I  V  I  R  M  H  Q  M  L  I  W  W  Q  S  I  K  F  G  Q  Q  C  V  H  R  G  K  T  G  H  S  T  L  L  T  V  M  C  S  N  G  S  I  C  G  R  Y  W  R  K  K  L  E  L  N  M  W  N  S  T  R  R  R  R  L  F  H  C  P  R  *  *  R  I  R  G  L  C  G  I  R  L  *  K  T  I  S  *  F  R  Q  S  *  K  R  L  D  C  G  V  L  Q  I  C  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126699" stop="126782"/>
                    <exon start="126914" stop="127921"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1092</number_coding_nucleotides>
                  <number_encoded_amino_acids>364</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTSSYFCQSAHFLRMNWWLSRSIHNAQQKNVEYRGTHENVGLIIGVTGVVGNSLAGTLSSTDTPGGPWKIYGVSRRGTPVCSIAKVTYIQCDVSKSTDVQAKLSTLKDVTHIFWVTSAFDLSTSKCCEINGTMFRNVLTCVIPNAPNLRHICLQTGGMHYMEIHRSIDGKLCVTSHDPPFHEDMKRLENVHNFYYTLEDVLFDEVSRKPTLTWSVHRPDLIFGFSPYSTLNIIGTLCVYATICKFIHIPMKFPGTEAVWDSYSNASDANLVAEHQIWAAMCAQGKNRAFNITNGDVFKWKHLWKVLAEEIGVEYVEFNATEKIISLSEMMKDKGPVWDKIVKDNKLIPTKLEEVGLWGFADMLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="130113" PGL_stop="131533"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130113" e_stop="130341"/>
            <exon e_start="131009" e_stop="131123"/>
            <exon e_start="131198" e_stop="131533"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.974"/>
          <exon-intron don_prob="0.992" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="130113" e_stop="130341" e_length="229"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="130342" i_stop="131008" i_length="667"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="131009" e_stop="131123" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.981">
            <gDNA_intron_boundary i_start="131124" i_stop="131197" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="0.970">
            <gDNA_exon_boundary e_start="131198" e_stop="131533" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130113" stop="130341"/>
              <exon start="131009" stop="131123"/>
              <exon start="131198" stop="131533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCTCAATTTTGAAAATCAAAATTTGTGCTCTCCATCCGTCAGCCTTCGTCTAATCTGTCCGCCATTTTTGTCTACTTTGTCAGCCTTTGAAAATCAAAATTGTGCTCTCCGTCCGTCCGTCTTCGTCTAATCTGTCCGCCATTTTTGTCTATTCTGTCCGCCTTAAAAAATCAAATCGCCAATTTCGTCTACTCTGTCCGCCATTTTCGTCCAATATTCTTGAAAG : ATTGGGCAGCATTGGATGCATATAAAGACAAGAAAACTGGAGAACTTTTGGGTCCACAACATTCGTTTAATGTGGAGTTTGCTCAAGACAACATGCAACAAATAAGTGATAGCCT : TGATTGCGGACTATTCGTAGTTGTATATGCAGAATTCTGAGTGACAAAATCAACATGTCATGTAATAGTTTTAAGAGTAGCTATCTTCGCAAAAGATATGCGATTCTTTTATTGAAGTATGGTCTCGACAAGATGAATGCTGGATATGTTAGCAACAGTGATGACCCTTCAAGAATGAACAATGTATTAAACCCATCATCTGAAGATGAAATTGTTAATGTAGGCTAGTTAGTTTTCAATGTTTGATTATTTTTTTTTTGGAGTTAAACAAGATGTTTGAAGTATTTATTAACATAACAACACATATTGTTAAATTATGAAAGTGTTTTGATTTTT</gDNA_template>
            <first_frame> S  S  Q  F  *  K  S  K  F  V  L  S  I  R  Q  P  S  S  N  L  S  A  I  F  V  Y  F  V  S  L  *  K  S  K  L  C  S  P  S  V  R  L  R  L  I  C  P  P  F  L  S  I  L  S  A  L  K  N  Q  I  A  N  F  V  Y  S  V  R  H  F  R  P  I  F  L  K   : D  W  A  A  L  D  A  Y  K  D  K  K  T  G  E  L  L  G  P  Q  H  S  F  N  V  E  F  A  Q  D  N  M  Q  Q  I  S  D  S  L :   D  C  G  L  F  V  V  V  Y  A  E  F  *  V  T  K  S  T  C  H  V  I  V  L  R  V  A  I  F  A  K  D  M  R  F  F  Y  *  S  M  V  S  T  R  *  M  L  D  M  L  A  T  V  M  T  L  Q  E  *  T  M  Y  *  T  H  H  L  K  M  K  L  L  M  *  A  S  *  F  S  M  F  D  Y  F  F  F  G  V  K  Q  D  V  *  S  I  Y  *  H  N  N  T  Y  C  *  I  M  K  V  F  *  F   </first_frame>
            <second_frame>  L  L  N  F  E  N  Q  N  L  C  S  P  S  V  S  L  R  L  I  C  P  P  F  L  S  T  L  S  A  F  E  N  Q  N  C  A  L  R  P  S  V  F  V  *  S  V  R  H  F  C  L  F  C  P  P  *  K  I  K  S  P  I  S  S  T  L  S  A  I  F  V  Q  Y  S  *  K  :  I  G  Q  H  W  M  H  I  K  T  R  K  L  E  N  F  W  V  H  N  I  R  L  M  W  S  L  L  K  T  T  C  N  K  *  V  I  A   : L  I  A  D  Y  S  *  L  Y  M  Q  N  S  E  *  Q  N  Q  H  V  M  *  *  F  *  E  *  L  S  S  Q  K  I  C  D  S  F  I  E  V  W  S  R  Q  D  E  C  W  I  C  *  Q  Q  *  *  P  F  K  N  E  Q  C  I  K  P  I  I  *  R  *  N  C  *  C  R  L  V  S  F  Q  C  L  I  I  F  F  L  E  L  N  K  M  F  E  V  F  I  N  I  T  T  H  I  V  K  L  *  K  C  F  D  F  </second_frame>
            <third_frame>   F  S  I  L  K  I  K  I  C  A  L  H  P  S  A  F  V  *  S  V  R  H  F  C  L  L  C  Q  P  L  K  I  K  I  V  L  S  V  R  P  S  S  S  N  L  S  A  I  F  V  Y  S  V  R  L  K  K  S  N  R  Q  F  R  L  L  C  P  P  F  S  S  N  I  L  E  R :   L  G  S  I  G  C  I  *  R  Q  E  N  W  R  T  F  G  S  T  T  F  V  *  C  G  V  C  S  R  Q  H  A  T  N  K  *  *  P  :  *  L  R  T  I  R  S  C  I  C  R  I  L  S  D  K  I  N  M  S  C  N  S  F  K  S  S  Y  L  R  K  R  Y  A  I  L  L  L  K  Y  G  L  D  K  M  N  A  G  Y  V  S  N  S  D  D  P  S  R  M  N  N  V  L  N  P  S  S  E  D  E  I  V  N  V  G  *  L  V  F  N  V  *  L  F  F  F  W  S  *  T  R  C  L  K  Y  L  L  T  *  Q  H  I  L  L  N  Y  E  S  V  L  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130206" stop="130341"/>
                    <exon start="131009" stop="131123"/>
                    <exon start="131198" stop="131237"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKLCSPSVRLRLICPPFLSILSALKNQIANFVYSVRHFRPIFLKDWAALDAYKDKKTGELLGPQHSFNVEFAQDNMQQISDSLDCGLFVVVYAEF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01SLm0026F20.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131201" stop="131425"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRTIRSCICRILSDKINMSCNSFKSSYLRKRYAILLLKYGLDKMNAGYVSNSDDPSRMNNVLNPSSEDEIVNVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 55 chains have been computed
$ 
$ memory statistics:
$ 58096 bytes spliced alignments in total
$ 26 spliced alignments have been stored
$ 2234 bytes was the average size of a spliced alignment
$ 32160 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 1461 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 66 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 07:28:41
-->
