<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 07:18:53"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212845" ref_strand="+" ref_description="SGN-E212845 [cLEC-73-K2]">
      <seq>caaaacgaagaaaacgccgctgttgacggcacgtccagataccgatggtgggcagccgcgagtacaggtcagttactatggggaatttacgcttataggagaggttttgccggcgaatgtcgaatgatgccacttaaagccttcgccgtcgcctcgcttttcgtcggcgccaccgcctccgcctctatggcttctcttcgcgcctgcggcatccactcggtggaagacatgaaggttgtcggggaaagtataagaaccggacttgggttgacacgaagggcacgagaagactgactactttagagcactatcgcgaatcagtagccttaagacgattgaccaaggaagatctccatctgtgtagtttcttgctaaactcaattccaaggggagcacatatccgaaagggtatctaccccaggcatgtacctaagtaataaaatggatgacatttgtttttctatatacaaggttaatttatacttagtggataagtatatccaactatgcactggcatattgtatcatatcaactgcatctacgacagctacaagagcatcagttgtttgggtttaaaaaaaaaaaaaaaaaaaaaacgcgagactagttctctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="21880" stop="16970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21580" g_stop="21362" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21361" i_stop="17628" i_length="3734">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17627" g_stop="17276" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="571" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="576" polyA_stop="598"/>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E212845" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21580" e_stop="21362"/>
          <exon e_start="17627" e_stop="17276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACGAAGAAAACGCCGCTGTTGACGGCACGTCCAGATACCGATGGTGGGCAGCCGCGAGTACAGGTCAGTTACTATGGGGAATTTACGCTTATAGGAGAGGTTTTGCCGGCGAATGTCGAATGATGCCACTTAAAGCCTTCGCCGTCGCCTCGCTTTTCGTCGGCGCCACCGCCTCCGCCTCTATGGCTTCTCTTCGCGCCTGCGGCATCCACTCGGTAAGTTCTCTCTTTGCGCTGACTTCTTTAATAGACTAAAGAAATTTGTCATTTTTTTTATAGTATTATTGGAGTTCAGTTGACTAAACCTAAACTGACTATGTACTGCAATCGGTAGGGGTTAGAGTTGTTAAGGTTTATGTATTTGTGTGGAGGAATTTGGTATTCAACTGACATTTGAAATAAATACTCCCTGTGACGGCATGGAGTTAAGATTCTAAGCTGTGGTGTTTATTGTTCTTTTGTGCTTTCTCTGTTTACCACACCTTTCTGGAGTCCTTAGACATTAGAATGAACAATTGCTAAGTGGTTGCTTGAATGGAGATCCTACTTATCACTCAGTTGGAATAAATCAGTTTTTTTTTTTTTGACCCTCCCAGCCATTCTTCAGGAAGGTGTTCTTTTTGTGGTAGAAAAAGGAAGATTGGAAAGAAAACTGAGGTTTACGATGGTGTTATTGTGCATTGTGTTGCATGGTAGTTAACTTCTAGGCTACAACCTGCTATCTGGGTTCCTATTTTGCTTTATATTACATGATTTTCTATTTTAAATGTTTAGGTGCAGAATTCACAATTCTGAGATTTAGTGTTCAAGTTGAGAACTTTAATAATTAGAGTAAGTAAGAATTCAAGCTTGTTTGGGCAATTAGGTTCTGACTTTTAATTATTTGGAACGATTGATAAGGTTTCATGGCCATAGGTCAGAAAGTTCATTAGTAAGCATTATGAACTTCTCCAATTATAGGTTGGATGAAGTTTATTTGCGTTGCTGAGAATAAATTTTGATAGCACCATCTCTCTGTGCTTGGTGACATTGTGAGACTTGGTTTGGGTGCTGGAAATCTTTCTGCTTATACAAGTATTTGGCTGCATGCAATGAATAAGAAATTGAAAGCAGAGGGAAACAATGATTCTTATTTGACCTAGTTCTAGCTAGAAAGATGTAGATTATACACACCTTAGGTTGATAAGAACTGAGGTTTGGAACCCTACCTAAGTAGGCTTACCACATGTACTTGATCCTGGGGAGGGGGGGCATCTAATTTCATGAATATATCGTAGAGAGGGTATTGGGAAAGAGTTGGATAGGAAAGTTTTTCAAGGAGACATGAATCGTTAATGCCTTTGTGATGTCTCAAGTTGGTGATAGTGGAACTATTTGCTTGCTCTAATGGAAAATAGATTCAGCCCATTGATACAAATTCCTGGAAGTATTTAGGATACACTGAAGCATTTTGGTTAAAGTACTGTAGTGGATTCGGTGAAGTACTAAACGCTTATGCTTCATCAAAGAAAATGAAAGCTCATGGAAGCAGCTCACACCTTCAAGTCCAAGGCAAATTTACTGTGTGATATGAAGAACAAATTTTTAGGTACTTTTTCATCAAGTATAGTGGGATGTCTTGTTGCTTGCCAACGAGTCTAAGCAACAGTTAGAACGATGGATTTGGATAGAATGATTTGCTTGGATTGATGCGTTGTTCTCAGTGTTACAAAAGGCGAGCGCCTCATCGCCTTTGGCGAGAGGCGAGGCGAGACGATGGGTCCTCGCCATTCTCTGCCGAGGCGAGGCGATAGCAAAAAAGCGAGGAGTGGCGAGGTGTGGCGCTACAATGGCGACAGAAAAGGCGCTGCCTTTTTAATTAAAAATATTAGTCAAAATTAGGGTTTTTTATTACTTTTGAAATTTCTGAAACTCCATCGCGACTCTCTCTCTCGATTGACTCTCTTCTCCAGTTCTCTTCTCTTCTCCATTGCTGTCTCTTCTCCCTCACTCTCCATCGCTGTCGGATTCTGTTCTCCTTCTCCTCGTCGGCCGCCGGCTCACGATTCTGTTCCCTCGCGACTCTCTGTTCTCCAGGTATGTCGTTTTCTCTCTTCTTCTTCAACAATTTTTTTCTGTTCTTCTTCTTCAGTTTTTTTCAGTTGTGTTTTTTTGGTGCAAGGCTGTAAGCAGTGCTTAATTGCTTACTGCTTTGTGTAATTTTTTTTTAATTATAGGCAGTTAATTAAAAAAAAATCTTTCCATTTTTCTAATTATTTATTCCAATATTCCTAAACAACGAATTAATTGAATTTAATAATCAATGGCGGTTGCTAGCAAAAGAGGGACATTGGATGGAATTATGGCACTCAAGGGTAATTTTGAAGAAGAATAGACTTTTAAAGTTTTGGTTTATTGTATTTTGAATTGTTTGGTCTTTAAAGTTTTAGACATTTTAGTATCTACTATTGGTTTTTGAATTGAATATTTGCTAATATGTGTTATTGCTATTAAGATTTTGGATAAAATATGCAGTTAAATATTTTTAATTTTTGGTATTAATTGGCGCCTTTATTCAAAAAGGCAAGCGCCTCGCCGCGTGGCGAGGCAGGCCCTTGTCGCCTTTTGTCGCCTCTCGCCGTCCACAACACTGGTTGTTCTTGATGTTGCTGGTGGTGGTCTTTGAAAGTAGAAAAAAATTGATGCTTTTACATGTGTTACAAATTGGACATGTTCATTGAATGTGGAAAGTATTCAGCTGTTGATATTTGACAAGTTACATGTAAGATTATTTGGTTTTACCTTGTGTTTCATATACTGTTATCTCATTTCATTTGTGTGGGATCATATAATATTGGAAAGAAATCGTGTTTTACTCATATTTTTGCAAGTGTGCACAGCATGCACACAAAATTTGTGAAAGTTGGACGACATATTTTTCTCTTCATCTTTTCCTATTTATTCATCTTATCATCGGAAAGGATCCTTTCTTCCTCTCCTGTTTCCATTAGATGGAAAAAATTATAAAATCAAACTCTTTTTTTACTAGTATGACGTGTTAAAACCTTGTAGCATGTTACTGTGTTTGTCTACATGAAGCACATTGACATACTTTTTTATCACTTGATCTTAAAGGGTAGGAACTGAGGGAACGGAAAATGCTTATATACGGCTGGAGTCCTACAGGAAGAATATATAGCTAAAAATTAGGTATAGTTCAGGTGTAAAATTAGCACCTTTTAATTTCATCCAGTACAAGGCTGGTCAATGTAATTTTTCAACTGCTGGCAAAGTATTCATGCAATAACGCAAATATCAATTTCATATTGTAGTTTCTGTACTAAGGGCATGATGTCAGGAACATGGAGGGAGAGAGAAATGCGTATAAATGAGCAGTGTCATGCTCAAAGAAGATTAGAAGGGTTAGGTCTAGTTTAGTTGTAAACGTAGTGGTTTTTTTATACATATGAGTAGTACCTGGAGATCATGTCTGTTTTCTAGCTAAACACTTGGTATGATCTCATTTGCGCTTGCATTGCTGGGTAGGATTGCGGGCAATCAATGGTTCTAGGCTAAACTGGTCATCTAGGGGATTCATAAATGCACACAGGTGAACACTGGACACCACCATCAAGTTACGACTTGTTTTATAAGCGAGATGTGAGTTTCTCCAAGAAGATGGAGTTGAGCATTATCGAAGTGAGAAGCTTGGAGGTGTCTAGGCCATTTGAATGGTGTTGAATGAGTTAAAGATTGAGATACTCGCCAATATAAGGCGAGAACCATAGGACGTGTTTCATGCCTCGTGTGCTGCGTAAGCGACAATTGGGTCAATGAAACCCAAAAAGTTGCATTAAACTTTTTGTTGGGATACGCTTTGACCCTCTCGATAAGTTTCAATCAGTGTCAATTAATCTCCTTTTTTCAGTTTTTTTAAAATTATGTGCAGTAATTTGTTGCAAAATGCACAGGTGGAAGACATGAAGGTTGTCGGGGAAAGTATAAGAACCGGACTTGGGTTGACACGAAGGGCACGAGAAGACTGACTACTTTAGAGCACTATCGCGAATCAGTAGCCTTAAGACGATTGACCAAGGAAGATCTCCATCTGTGTAGTTTCTTGCTAAACTCAATTCCAAGGGGAGCACATATCCGAAAGGGTATCTACCCCAGGCATGTACCTAAGTAATAAAATGGATGACATTTGTTTTTCTATATACAAGGTTAATTTATACTTAGTGGATAAGTATATCCAACTATGCACTGGCATATTGTATCATATCAACTGCATCTACGACAGCTACAAGAGCATCAGTTGTTTGG</genome_strand>
        <mrna_strand>CAAAACGAAGAAAACGCCGCTGTTGACGGCACGTCCAGATACCGATGGTGGGCAGCCGCGAGTACAGGTCAGTTACTATGGGGAATTTACGCTTATAGGAGAGGTTTTGCCGGCGAATGTCGAATGATGCCACTTAAAGCCTTCGCCGTCGCCTCGCTTTTCGTCGGCGCCACCGCCTCCGCCTCTATGGCTTCTCTTCGCGCCTGCGGCATCCACTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGACATGAAGGTTGTCGGGGAAAGTATAAGAACCGGACTTGGGTTGACACGAAGGGCACGAGAAGACTGACTACTTTAGAGCACTATCGCGAATCAGTAGCCTTAAGACGATTGACCAAGGAAGATCTCCATCTGTGTAGTTTCTTGCTAAACTCAATTCCAAGGGGAGCACATATCCGAAAGGGTATCTACCCCAGGCATGTACCTAAGTAATAAAATGGATGACATTTGTTTTTCTATATACAAGGTTAATTTATACTTAGTGGATAAGTATATCCAACTATGCACTGGCATATTGTATCATATCAACTGCATCTACGACAGCTACAAGAGCATCAGTTGTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310558" ref_strand="+" ref_description="SGN-E310558 [cLEZ-19-I22]">
      <seq>ggaatttacgcttataggagaggttttgccggcgaatgtcgaatgatgccacttaaagccttcgccgtcgcctcgcttttcgtcggcgccaccgcctccgcctctatggcttctcttcgcgcctgcggcatccactcggtggaagacatgaaggttgtcggggaaagtataagaaccggacttgggttgacacgaagggcacgagaagactgactactttagagcactatcgcgaatcagtagccttaagacgattgaccaaggaagatctccatctgtgtagtttcttgctaaactcaattccaaggggagcacatatccgaaagggtatctaccccaggcatgtacctaagtaataaaatggatgacatttgtttttctatatacaaggttaatttatacttagtggataagtatatccaactatgcactggcatattgtatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="21799" stop="17014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21499" g_stop="21362" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21361" i_stop="17628" i_length="3734">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17627" g_stop="17310" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="456" r_length="318" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E310558" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21499" e_stop="21362"/>
          <exon e_start="17627" e_stop="17310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTTACGCTTATAGGAGAGGTTTTGCCGGCGAATGTCGAATGATGCCACTTAAAGCCTTCGCCGTCGCCTCGCTTTTCGTCGGCGCCACCGCCTCCGCCTCTATGGCTTCTCTTCGCGCCTGCGGCATCCACTCGGTAAGTTCTCTCTTTGCGCTGACTTCTTTAATAGACTAAAGAAATTTGTCATTTTTTTTATAGTATTATTGGAGTTCAGTTGACTAAACCTAAACTGACTATGTACTGCAATCGGTAGGGGTTAGAGTTGTTAAGGTTTATGTATTTGTGTGGAGGAATTTGGTATTCAACTGACATTTGAAATAAATACTCCCTGTGACGGCATGGAGTTAAGATTCTAAGCTGTGGTGTTTATTGTTCTTTTGTGCTTTCTCTGTTTACCACACCTTTCTGGAGTCCTTAGACATTAGAATGAACAATTGCTAAGTGGTTGCTTGAATGGAGATCCTACTTATCACTCAGTTGGAATAAATCAGTTTTTTTTTTTTTGACCCTCCCAGCCATTCTTCAGGAAGGTGTTCTTTTTGTGGTAGAAAAAGGAAGATTGGAAAGAAAACTGAGGTTTACGATGGTGTTATTGTGCATTGTGTTGCATGGTAGTTAACTTCTAGGCTACAACCTGCTATCTGGGTTCCTATTTTGCTTTATATTACATGATTTTCTATTTTAAATGTTTAGGTGCAGAATTCACAATTCTGAGATTTAGTGTTCAAGTTGAGAACTTTAATAATTAGAGTAAGTAAGAATTCAAGCTTGTTTGGGCAATTAGGTTCTGACTTTTAATTATTTGGAACGATTGATAAGGTTTCATGGCCATAGGTCAGAAAGTTCATTAGTAAGCATTATGAACTTCTCCAATTATAGGTTGGATGAAGTTTATTTGCGTTGCTGAGAATAAATTTTGATAGCACCATCTCTCTGTGCTTGGTGACATTGTGAGACTTGGTTTGGGTGCTGGAAATCTTTCTGCTTATACAAGTATTTGGCTGCATGCAATGAATAAGAAATTGAAAGCAGAGGGAAACAATGATTCTTATTTGACCTAGTTCTAGCTAGAAAGATGTAGATTATACACACCTTAGGTTGATAAGAACTGAGGTTTGGAACCCTACCTAAGTAGGCTTACCACATGTACTTGATCCTGGGGAGGGGGGGCATCTAATTTCATGAATATATCGTAGAGAGGGTATTGGGAAAGAGTTGGATAGGAAAGTTTTTCAAGGAGACATGAATCGTTAATGCCTTTGTGATGTCTCAAGTTGGTGATAGTGGAACTATTTGCTTGCTCTAATGGAAAATAGATTCAGCCCATTGATACAAATTCCTGGAAGTATTTAGGATACACTGAAGCATTTTGGTTAAAGTACTGTAGTGGATTCGGTGAAGTACTAAACGCTTATGCTTCATCAAAGAAAATGAAAGCTCATGGAAGCAGCTCACACCTTCAAGTCCAAGGCAAATTTACTGTGTGATATGAAGAACAAATTTTTAGGTACTTTTTCATCAAGTATAGTGGGATGTCTTGTTGCTTGCCAACGAGTCTAAGCAACAGTTAGAACGATGGATTTGGATAGAATGATTTGCTTGGATTGATGCGTTGTTCTCAGTGTTACAAAAGGCGAGCGCCTCATCGCCTTTGGCGAGAGGCGAGGCGAGACGATGGGTCCTCGCCATTCTCTGCCGAGGCGAGGCGATAGCAAAAAAGCGAGGAGTGGCGAGGTGTGGCGCTACAATGGCGACAGAAAAGGCGCTGCCTTTTTAATTAAAAATATTAGTCAAAATTAGGGTTTTTTATTACTTTTGAAATTTCTGAAACTCCATCGCGACTCTCTCTCTCGATTGACTCTCTTCTCCAGTTCTCTTCTCTTCTCCATTGCTGTCTCTTCTCCCTCACTCTCCATCGCTGTCGGATTCTGTTCTCCTTCTCCTCGTCGGCCGCCGGCTCACGATTCTGTTCCCTCGCGACTCTCTGTTCTCCAGGTATGTCGTTTTCTCTCTTCTTCTTCAACAATTTTTTTCTGTTCTTCTTCTTCAGTTTTTTTCAGTTGTGTTTTTTTGGTGCAAGGCTGTAAGCAGTGCTTAATTGCTTACTGCTTTGTGTAATTTTTTTTTAATTATAGGCAGTTAATTAAAAAAAAATCTTTCCATTTTTCTAATTATTTATTCCAATATTCCTAAACAACGAATTAATTGAATTTAATAATCAATGGCGGTTGCTAGCAAAAGAGGGACATTGGATGGAATTATGGCACTCAAGGGTAATTTTGAAGAAGAATAGACTTTTAAAGTTTTGGTTTATTGTATTTTGAATTGTTTGGTCTTTAAAGTTTTAGACATTTTAGTATCTACTATTGGTTTTTGAATTGAATATTTGCTAATATGTGTTATTGCTATTAAGATTTTGGATAAAATATGCAGTTAAATATTTTTAATTTTTGGTATTAATTGGCGCCTTTATTCAAAAAGGCAAGCGCCTCGCCGCGTGGCGAGGCAGGCCCTTGTCGCCTTTTGTCGCCTCTCGCCGTCCACAACACTGGTTGTTCTTGATGTTGCTGGTGGTGGTCTTTGAAAGTAGAAAAAAATTGATGCTTTTACATGTGTTACAAATTGGACATGTTCATTGAATGTGGAAAGTATTCAGCTGTTGATATTTGACAAGTTACATGTAAGATTATTTGGTTTTACCTTGTGTTTCATATACTGTTATCTCATTTCATTTGTGTGGGATCATATAATATTGGAAAGAAATCGTGTTTTACTCATATTTTTGCAAGTGTGCACAGCATGCACACAAAATTTGTGAAAGTTGGACGACATATTTTTCTCTTCATCTTTTCCTATTTATTCATCTTATCATCGGAAAGGATCCTTTCTTCCTCTCCTGTTTCCATTAGATGGAAAAAATTATAAAATCAAACTCTTTTTTTACTAGTATGACGTGTTAAAACCTTGTAGCATGTTACTGTGTTTGTCTACATGAAGCACATTGACATACTTTTTTATCACTTGATCTTAAAGGGTAGGAACTGAGGGAACGGAAAATGCTTATATACGGCTGGAGTCCTACAGGAAGAATATATAGCTAAAAATTAGGTATAGTTCAGGTGTAAAATTAGCACCTTTTAATTTCATCCAGTACAAGGCTGGTCAATGTAATTTTTCAACTGCTGGCAAAGTATTCATGCAATAACGCAAATATCAATTTCATATTGTAGTTTCTGTACTAAGGGCATGATGTCAGGAACATGGAGGGAGAGAGAAATGCGTATAAATGAGCAGTGTCATGCTCAAAGAAGATTAGAAGGGTTAGGTCTAGTTTAGTTGTAAACGTAGTGGTTTTTTTATACATATGAGTAGTACCTGGAGATCATGTCTGTTTTCTAGCTAAACACTTGGTATGATCTCATTTGCGCTTGCATTGCTGGGTAGGATTGCGGGCAATCAATGGTTCTAGGCTAAACTGGTCATCTAGGGGATTCATAAATGCACACAGGTGAACACTGGACACCACCATCAAGTTACGACTTGTTTTATAAGCGAGATGTGAGTTTCTCCAAGAAGATGGAGTTGAGCATTATCGAAGTGAGAAGCTTGGAGGTGTCTAGGCCATTTGAATGGTGTTGAATGAGTTAAAGATTGAGATACTCGCCAATATAAGGCGAGAACCATAGGACGTGTTTCATGCCTCGTGTGCTGCGTAAGCGACAATTGGGTCAATGAAACCCAAAAAGTTGCATTAAACTTTTTGTTGGGATACGCTTTGACCCTCTCGATAAGTTTCAATCAGTGTCAATTAATCTCCTTTTTTCAGTTTTTTTAAAATTATGTGCAGTAATTTGTTGCAAAATGCACAGGTGGAAGACATGAAGGTTGTCGGGGAAAGTATAAGAACCGGACTTGGGTTGACACGAAGGGCACGAGAAGACTGACTACTTTAGAGCACTATCGCGAATCAGTAGCCTTAAGACGATTGACCAAGGAAGATCTCCATCTGTGTAGTTTCTTGCTAAACTCAATTCCAAGGGGAGCACATATCCGAAAGGGTATCTACCCCAGGCATGTACCTAAGTAATAAAATGGATGACATTTGTTTTTCTATATACAAGGTTAATTTATACTTAGTGGATAAGTATATCCAACTATGCACTGGCATATTGTATCATATCAACTGC</genome_strand>
        <mrna_strand>GGAATTTACGCTTATAGGAGAGGTTTTGCCGGCGAATGTCGAATGATGCCACTTAAAGCCTTCGCCGTCGCCTCGCTTTTCGTCGGCGCCACCGCCTCCGCCTCTATGGCTTCTCTTCGCGCCTGCGGCATCCACTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGACATGAAGGTTGTCGGGGAAAGTATAAGAACCGGACTTGGGTTGACACGAAGGGCACGAGAAGACTGACTACTTTAGAGCACTATCGCGAATCAGTAGCCTTAAGACGATTGACCAAGGAAGATCTCCATCTGTGTAGTTTCTTGCTAAACTCAATTCCAAGGGGAGCACATATCCGAAAGGGTATCTACCCCAGGCATGTACCTAAGTAATAAAATGGATGACATTTGTTTTTCTATATACAAGGTTAATTTATACTTAGTGGATAAGTATATCCAACTATGCACTGGCATATTGTATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293505" ref_strand="+" ref_description="SGN-E293505 [cLET-15-F10]">
      <seq>ggtaatgaaccaaaacgaagaaaacgccgctgttgacggcacgtccagataccgatggtgggcagccgcgagtacaggtcagttactatggggaatttacgcttataggagaggttttgccggcgaatgtcgaatgatgccacttaaagccttcgccgtcgcctcgcttttcgtcggcgccaccgcctccgcctctatggcttctcttcgcgcctgcggcatccactcggtggaagacatgaaggttgtcggggaaagtataagaaccggacttgggttgacacgaagggcacgagaagactgactactttagagcactatcgcgaatcagtagccttaagacgattgaccaaggaagatctccatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="21890" stop="17189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21590" g_stop="21362" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21361" i_stop="17628" i_length="3734">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17627" g_stop="17489" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="368" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E293505" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21590" e_stop="21362"/>
          <exon e_start="17627" e_stop="17489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAATGAACCAAAACGAAGAAAACGCCGCTGTTGACGGCACGTCCAGATACCGATGGTGGGCAGCCGCGAGTACAGGTCAGTTACTATGGGGAATTTACGCTTATAGGAGAGGTTTTGCCGGCGAATGTCGAATGATGCCACTTAAAGCCTTCGCCGTCGCCTCGCTTTTCGTCGGCGCCACCGCCTCCGCCTCTATGGCTTCTCTTCGCGCCTGCGGCATCCACTCGGTAAGTTCTCTCTTTGCGCTGACTTCTTTAATAGACTAAAGAAATTTGTCATTTTTTTTATAGTATTATTGGAGTTCAGTTGACTAAACCTAAACTGACTATGTACTGCAATCGGTAGGGGTTAGAGTTGTTAAGGTTTATGTATTTGTGTGGAGGAATTTGGTATTCAACTGACATTTGAAATAAATACTCCCTGTGACGGCATGGAGTTAAGATTCTAAGCTGTGGTGTTTATTGTTCTTTTGTGCTTTCTCTGTTTACCACACCTTTCTGGAGTCCTTAGACATTAGAATGAACAATTGCTAAGTGGTTGCTTGAATGGAGATCCTACTTATCACTCAGTTGGAATAAATCAGTTTTTTTTTTTTTGACCCTCCCAGCCATTCTTCAGGAAGGTGTTCTTTTTGTGGTAGAAAAAGGAAGATTGGAAAGAAAACTGAGGTTTACGATGGTGTTATTGTGCATTGTGTTGCATGGTAGTTAACTTCTAGGCTACAACCTGCTATCTGGGTTCCTATTTTGCTTTATATTACATGATTTTCTATTTTAAATGTTTAGGTGCAGAATTCACAATTCTGAGATTTAGTGTTCAAGTTGAGAACTTTAATAATTAGAGTAAGTAAGAATTCAAGCTTGTTTGGGCAATTAGGTTCTGACTTTTAATTATTTGGAACGATTGATAAGGTTTCATGGCCATAGGTCAGAAAGTTCATTAGTAAGCATTATGAACTTCTCCAATTATAGGTTGGATGAAGTTTATTTGCGTTGCTGAGAATAAATTTTGATAGCACCATCTCTCTGTGCTTGGTGACATTGTGAGACTTGGTTTGGGTGCTGGAAATCTTTCTGCTTATACAAGTATTTGGCTGCATGCAATGAATAAGAAATTGAAAGCAGAGGGAAACAATGATTCTTATTTGACCTAGTTCTAGCTAGAAAGATGTAGATTATACACACCTTAGGTTGATAAGAACTGAGGTTTGGAACCCTACCTAAGTAGGCTTACCACATGTACTTGATCCTGGGGAGGGGGGGCATCTAATTTCATGAATATATCGTAGAGAGGGTATTGGGAAAGAGTTGGATAGGAAAGTTTTTCAAGGAGACATGAATCGTTAATGCCTTTGTGATGTCTCAAGTTGGTGATAGTGGAACTATTTGCTTGCTCTAATGGAAAATAGATTCAGCCCATTGATACAAATTCCTGGAAGTATTTAGGATACACTGAAGCATTTTGGTTAAAGTACTGTAGTGGATTCGGTGAAGTACTAAACGCTTATGCTTCATCAAAGAAAATGAAAGCTCATGGAAGCAGCTCACACCTTCAAGTCCAAGGCAAATTTACTGTGTGATATGAAGAACAAATTTTTAGGTACTTTTTCATCAAGTATAGTGGGATGTCTTGTTGCTTGCCAACGAGTCTAAGCAACAGTTAGAACGATGGATTTGGATAGAATGATTTGCTTGGATTGATGCGTTGTTCTCAGTGTTACAAAAGGCGAGCGCCTCATCGCCTTTGGCGAGAGGCGAGGCGAGACGATGGGTCCTCGCCATTCTCTGCCGAGGCGAGGCGATAGCAAAAAAGCGAGGAGTGGCGAGGTGTGGCGCTACAATGGCGACAGAAAAGGCGCTGCCTTTTTAATTAAAAATATTAGTCAAAATTAGGGTTTTTTATTACTTTTGAAATTTCTGAAACTCCATCGCGACTCTCTCTCTCGATTGACTCTCTTCTCCAGTTCTCTTCTCTTCTCCATTGCTGTCTCTTCTCCCTCACTCTCCATCGCTGTCGGATTCTGTTCTCCTTCTCCTCGTCGGCCGCCGGCTCACGATTCTGTTCCCTCGCGACTCTCTGTTCTCCAGGTATGTCGTTTTCTCTCTTCTTCTTCAACAATTTTTTTCTGTTCTTCTTCTTCAGTTTTTTTCAGTTGTGTTTTTTTGGTGCAAGGCTGTAAGCAGTGCTTAATTGCTTACTGCTTTGTGTAATTTTTTTTTAATTATAGGCAGTTAATTAAAAAAAAATCTTTCCATTTTTCTAATTATTTATTCCAATATTCCTAAACAACGAATTAATTGAATTTAATAATCAATGGCGGTTGCTAGCAAAAGAGGGACATTGGATGGAATTATGGCACTCAAGGGTAATTTTGAAGAAGAATAGACTTTTAAAGTTTTGGTTTATTGTATTTTGAATTGTTTGGTCTTTAAAGTTTTAGACATTTTAGTATCTACTATTGGTTTTTGAATTGAATATTTGCTAATATGTGTTATTGCTATTAAGATTTTGGATAAAATATGCAGTTAAATATTTTTAATTTTTGGTATTAATTGGCGCCTTTATTCAAAAAGGCAAGCGCCTCGCCGCGTGGCGAGGCAGGCCCTTGTCGCCTTTTGTCGCCTCTCGCCGTCCACAACACTGGTTGTTCTTGATGTTGCTGGTGGTGGTCTTTGAAAGTAGAAAAAAATTGATGCTTTTACATGTGTTACAAATTGGACATGTTCATTGAATGTGGAAAGTATTCAGCTGTTGATATTTGACAAGTTACATGTAAGATTATTTGGTTTTACCTTGTGTTTCATATACTGTTATCTCATTTCATTTGTGTGGGATCATATAATATTGGAAAGAAATCGTGTTTTACTCATATTTTTGCAAGTGTGCACAGCATGCACACAAAATTTGTGAAAGTTGGACGACATATTTTTCTCTTCATCTTTTCCTATTTATTCATCTTATCATCGGAAAGGATCCTTTCTTCCTCTCCTGTTTCCATTAGATGGAAAAAATTATAAAATCAAACTCTTTTTTTACTAGTATGACGTGTTAAAACCTTGTAGCATGTTACTGTGTTTGTCTACATGAAGCACATTGACATACTTTTTTATCACTTGATCTTAAAGGGTAGGAACTGAGGGAACGGAAAATGCTTATATACGGCTGGAGTCCTACAGGAAGAATATATAGCTAAAAATTAGGTATAGTTCAGGTGTAAAATTAGCACCTTTTAATTTCATCCAGTACAAGGCTGGTCAATGTAATTTTTCAACTGCTGGCAAAGTATTCATGCAATAACGCAAATATCAATTTCATATTGTAGTTTCTGTACTAAGGGCATGATGTCAGGAACATGGAGGGAGAGAGAAATGCGTATAAATGAGCAGTGTCATGCTCAAAGAAGATTAGAAGGGTTAGGTCTAGTTTAGTTGTAAACGTAGTGGTTTTTTTATACATATGAGTAGTACCTGGAGATCATGTCTGTTTTCTAGCTAAACACTTGGTATGATCTCATTTGCGCTTGCATTGCTGGGTAGGATTGCGGGCAATCAATGGTTCTAGGCTAAACTGGTCATCTAGGGGATTCATAAATGCACACAGGTGAACACTGGACACCACCATCAAGTTACGACTTGTTTTATAAGCGAGATGTGAGTTTCTCCAAGAAGATGGAGTTGAGCATTATCGAAGTGAGAAGCTTGGAGGTGTCTAGGCCATTTGAATGGTGTTGAATGAGTTAAAGATTGAGATACTCGCCAATATAAGGCGAGAACCATAGGACGTGTTTCATGCCTCGTGTGCTGCGTAAGCGACAATTGGGTCAATGAAACCCAAAAAGTTGCATTAAACTTTTTGTTGGGATACGCTTTGACCCTCTCGATAAGTTTCAATCAGTGTCAATTAATCTCCTTTTTTCAGTTTTTTTAAAATTATGTGCAGTAATTTGTTGCAAAATGCACAGGTGGAAGACATGAAGGTTGTCGGGGAAAGTATAAGAACCGGACTTGGGTTGACACGAAGGGCACGAGAAGACTGACTACTTTAGAGCACTATCGCGAATCAGTAGCCTTAAGACGATTGACCAAGGAAGATCTCCATCT</genome_strand>
        <mrna_strand>GGTAATGAACCAAAACGAAGAAAACGCCGCTGTTGACGGCACGTCCAGATACCGATGGTGGGCAGCCGCGAGTACAGGTCAGTTACTATGGGGAATTTACGCTTATAGGAGAGGTTTTGCCGGCGAATGTCGAATGATGCCACTTAAAGCCTTCGCCGTCGCCTCGCTTTTCGTCGGCGCCACCGCCTCCGCCTCTATGGCTTCTCTTCGCGCCTGCGGCATCCACTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGACATGAAGGTTGTCGGGGAAAGTATAAGAACCGGACTTGGGTTGACACGAAGGGCACGAGAAGACTGACTACTTTAGAGCACTATCGCGAATCAGTAGCCTTAAGACGATTGACCAAGGAAGATCTCCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368645" ref_strand="+" ref_description="SGN-E368645 [TUS-22-F14](-)">
      <seq>caaaaaattaaaaaatatttaactgcataattttgtccaaaaatcttaatagcaataacacatattaacaaatattcaattcaaaaaccaatagtagatactaaaatgtctaaaactttaaagaccaaacaattcaaaatacaataaaccaaaactttaaaagtctattcttcttcaaattatccaacccttgagtgtcataattccatccaatgtccctcttttgctagcaactgccattgattattaaattcaattaattcgctatttaggaatattggaataaataattaggaaaatggaaagattttttttttaattaactgcctataattaaaaaaaattacacaaagcagtaagcaactaagcactgcttacagccttgcaccaaaaaagcacaactgaaaaaaaaaactgaagaagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="18745" stop="19760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19043" g_stop="19464" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E368645" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19043" e_stop="19464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAATT-AAAAATATTTAACTGCAT-ATTTTATCC-AAAATCTTAATAGCAATAACACATATTAGCAAATATTCAATTCAAAAACCAATAGTAGATACTAAAATGTCTAAAACTTTAAAGACCAAACAATTCAAAATACAATAAACCAAAACTTTAAAAGTCTATTCTTCTTCAAA--AT--TACCCTTGAGTGCCATAATTCCATCCAATGTCCCTCTTTTGCTAGCAACCGCCATTGATTATTAAATTCAATTAATTCGTTGTTTAGGAATATTGGAATAAATAATTAGAAAAATGGAAAGA-TTTTTTTTTAATTAACTGCCTATAATTAAAAAAAAATTACACAAAGCAGTAAGCAATTAAGCACTGCTTACAGCCTTGCACCAAAAAAACACAACTGAAAAAAACTGAAGAAGAAGAACAGA</genome_strand>
        <mrna_strand>CAAAAAATTAAAAAATATTTAACTGCATAATTTTGTCCAAAAATCTTAATAGCAATAACACATATTAACAAATATTCAATTCAAAAACCAATAGTAGATACTAAAATGTCTAAAACTTTAAAGACCAAACAATTCAAAATACAATAAACCAAAACTTTAAAAGTCTATTCTTCTTCAAATTATCCAACCCTTGAGTGTCATAATTCCATCCAATGTCCCTCTTTTGCTAGCAACTGCCATTGATTATTAAATTCAATTAATTCGCTATTTAGGAATATTGGAATAAATAATTAGGAAAATGGAAAGATTTTTTTTTTAATTAACTGCCTATAATT-AAAAAAAATTACACAAAGCAGTAAGCAACTAAGCACTGCTTACAGCCTTGCACCAAAAAAGCACAACTGAAAAAAAAAACTGAAGAAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313800" ref_strand="+" ref_description="SGN-E313800 [cTOA-17-N2]">
      <seq>tgacactcaagggttggataattccatccaatgtccctcttttgctagcaaccaccattgattattaaattcaattaatttgctgtttaggaatattgaaataaataattaggaaaatggaaagattttttttttaattaactgcctataattaaaaaaagtaaattacacaaagcagtaagcaactaagcactgcttacagccttgcaccaaaaaaacacaactgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="18935" stop="19746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19235" g_stop="19449" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="236" r_length="219" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E313800" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19235" e_stop="19449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTCCATCCAATGTCCCTCTTTTGCTAGCAACCGCCATTGATTATTAAATTCAATTAATTCGTTGTTTAGGAATATTGGAATAAATAATTAGAAAAATGGAAAGA-TTTTTTTTTAATTAACTGCCTATAATTAAA-AAA--AAATTACACAAAGCAGTAAGCAATTAAGCACTGCTTACAGCCTTGCACCAAAAAAACACAACTGAAAAAAACTG</genome_strand>
        <mrna_strand>ATAATTCCATCCAATGTCCCTCTTTTGCTAGCAACCACCATTGATTATTAAATTCAATTAATTTGCTGTTTAGGAATATTGAAATAAATAATTAGGAAAATGGAAAGATTTTTTTTTTAATTAACTGCCTATAATTAAAAAAAGTAAATTACACAAAGCAGTAAGCAACTAAGCACTGCTTACAGCCTTGCACCAAAAAAACACAACTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486528" ref_strand="+" ref_description="SGN-E486528 [cSTE-22-M18]">
      <seq>ctccaatggctaattcgcagcaaatcgaaacatccacaaaccctaaccctaatcctcctcctccgggatccccaccgtcggctgcagccgttatttctcgaccgtcagatgaagaaacgaatcgttccgccacagctaaacgtccacgtgaggaatacgccgccggcactacggacgaggctggtttgttgggggacgatgtgccgccgttgaagaagcgggttaaggtttctcaagatgtagtgtaccgtattgttgttccgtcaagacagatcgggaaagttattggtaaagcagggcatcgtatacagaagattcgtgaagaaactaaagctactatcaaagttgctgatgctattgctcgtcatgaagagcgagtaattatcattagctccaaagacaatgatgatatgtttagtgacgcggaaaatgcccttcatcaaattgtgtcacttattttaaaggatgatggtggcaaccttgacgcacagaaagttggtgctggacatgtggcagcaaacacagtaaggttcttgattgctggttctcaagcaggtggtttgataggaatgtcaggtcaaaaatattgaaactttgaggaattcttctggagctacgatcacagttcttgctcancatcagttgcctctatgtgcatctgctcatgagtctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="26525" stop="29347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26825" g_stop="27186" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27187" i_stop="27908" i_length="722">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27909" g_stop="28010" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="464" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28011" i_stop="28836" i_length="826">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28837" g_stop="29047" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="676" r_length="212" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E486528" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26825" e_stop="27186"/>
          <exon e_start="27909" e_stop="28010"/>
          <exon e_start="28837" e_stop="29047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAATGGCTAATTCGCAGCAAATCGAAACCTCCATAAACCCTAGCCCTAATCCTCCTCCTCCGGGATCCCCACCGCCGGCTGCCGCCGTTGTTTCTCGACCGTCAGATGATGAAACGAATCGTTCCGCCACCGCTAAACGTTCACGGGAGGAATACGCCCCTGCCGCCACGGACGAGGCTGGTTTGTCTGGTGACGATGTGCCGCCGTTGAAGAAGCGGGTTAAGGTTTCTCAAGATGTAGTGTACCGTATTGTTGTTCCTTCAAGACAGATCGGGAAAGTTATTGGTAAAGCAGGGCATCGTATACAGAAGATTCGTGAAGAAACTAAAGCTACTATCAAAGTTGCTGATGCTATCGCTGTGAGTTATGCCATTTCTTGTTCTGTGTTGATGTTTTGTGTTATTAATTGTTAAATTCTTGGAAGCTCGAAATTGATTGTATGCCAAAATTAGGGCTATTTTGCCATTGCATTTGTCCAAGTTTGAGAATTTGTGGAATCCAATTGAGAAAATTCAAGACAAACTTCGTTGAATTGAAGGAATTTGACTATTTGAGAAATTATTTTTGTTGAACTGTTGGCTGAATTCCCTATTGATCAATGAAGTGTGTTGGTATGAGATGAGCTCTAGTGAAGATCAGTGAGGATCATATAACTTGCTGCAATTTGGGTTTAGGATTGAGGCTTAGTTGTTGTTTGGCATGTTGGTTTTGGTTCTCAATTACTCAATGTCAGACTAAGCATAGAGAATTTACTTCTCTGTCAGTGTTTTGGAGAATGAGAAGCGGAAAAGGGGACAAGGGCTCGTTTCACCCAAGCGAGTAACCTAAAGCAGGCACACGTCTTTTCCAACTAAAGCACTATTTAGTACAAAAACAAAAAAATATTAAATATGCATAGATAGATATCCAACAGTTCAATAGGAATAACAACAGAAGGACATGAAAAATTTAGTTGGAACTGAAGTGCTCTCTTTTTCACCATTGCCTTTCTTCACTGCAAAAATGCATTAGCTTCGCTTCCTGCTTTCATCGCTCACTTTTAATAACACTACTTATGCTGTTATGCATTTGGTATTTGCAGCGTCATGAAGAGCGAGTAATTATCATTAGCTCCAGGGACAATGATGATATGTTCAGTGACGCGGAGAATGCCCTTCATCAAATTGTGTCACTTATTTTAAAGGTAACATGATTTATGAGTGATAACATATTAAGTCATTTACTTTGAGCATTTCCTGTTTATATATTAGCAAAGAGATGTTTTGTACAGTATGTTTTTGGTCTTCTTTCCTACATTTTATTATATGACCTTTTTGATCTGCCAATTACACAAAAACTGTTTTATCGTCTAATCCTTGTTATAGCTGGTGTGTCTTTACAATAAATTTATGAATCTTTTTCCTGCGTCTGGTGCCAAAACTTAAGTCTTTTTGTCTGTTTTTGGAGGCTTAAGGATTGCTTTCTTATTCTCATTCCGCAATTATTTCCAGTTTTGTCATAAGTGTGGCAATAATCTCTGGGTGTACAACTTTTGAAAAAATATAAAACAAAGCCCTTTAACATCAATTACTCTGCCAACTGTTTCTGGACCATCTGTTTTTGGTGATTCCTCTTGTCCTGATATCTTTTATCTGTGTATACATATATAGTGTGTATCTTTATATTGAATAACATATATAGTGCGATCTTGGGAACCAATTTTGAGAGACCATGATTATATCCTCTGTGATACTCTCTTGGATCTTACATTTATACTCCTGGGGGAGGAGATTAATTGGCTAAGCCATTAAGATTTTCTCTCTTTCTGATATCTTTGCCTTGAGAGTGGCTTATGTATATTAATTAATAAGTCATGTAGGTTTCTAGATAAAAGTTGAACCATCTTCTTCTTGAACAAGGTTGTCACAGCTGCTATGTGTGATTCTGCTTCTTGTTTCAAGGTTAAACCATGAGAGCTTGCCCTGGTTGCCCAGGGGGAACTGATCCTTGCCCTATATTTTTTACCATGATAGGATGATGGCAACCTTGATGCGCAAAAAGTTGGTACTGGACATGTGGCAGCAAACACGGTAAGGTTCTTGATTGCTGGTTCTCAAGCAGGTGGTTTGATAGGAATGTCTGGTC-AAAATATTGAAACTTTGAGGAATTCTTCTGGAGCTACGATCACAGTTCTTGCTCAACATCAGTTGCCTTTGTGTGCATCTGCTCATGAGTCTGACC</genome_strand>
        <mrna_strand>CTCCAATGGCTAATTCGCAGCAAATCGAAACATCCACAAACCCTAACCCTAATCCTCCTCCTCCGGGATCCCCACCGTCGGCTGCAGCCGTTATTTCTCGACCGTCAGATGAAGAAACGAATCGTTCCGCCACAGCTAAACGTCCACGTGAGGAATACGCCGCCGGCACTACGGACGAGGCTGGTTTGTTGGGGGACGATGTGCCGCCGTTGAAGAAGCGGGTTAAGGTTTCTCAAGATGTAGTGTACCGTATTGTTGTTCCGTCAAGACAGATCGGGAAAGTTATTGGTAAAGCAGGGCATCGTATACAGAAGATTCGTGAAGAAACTAAAGCTACTATCAAAGTTGCTGATGCTATTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATGAAGAGCGAGTAATTATCATTAGCTCCAAAGACAATGATGATATGTTTAGTGACGCGGAAAATGCCCTTCATCAAATTGTGTCACTTATTTTAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGGTGGCAACCTTGACGCACAGAAAGTTGGTGCTGGACATGTGGCAGCAAACACAGTAAGGTTCTTGATTGCTGGTTCTCAAGCAGGTGGTTTGATAGGAATGTCAGGTCAAAAATATTGAAACTTTGAGGAATTCTTCTGGAGCTACGATCACAGTTCTTGCTCANCATCAGTTGCCTCTATGTGCATCTGCTCATGAGTCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427357" ref_strand="+" ref_description="SGN-E427357 [STM-48-E24]">
      <seq>ctccaatggctaattcgcagcaaatcgaaacatccacaaaccctaaccctaatcctcctcctccgggatccccaccgtcggctgcagccgttatttctcgaccgtcagatgaagaaacgaatcgttccgccacagctaaacgtccacgtgaggaatacgccgccggcactacggacgaggctggtttgttgggggacgatgtgccgccgttgaagaagcgggttaaggtttctcaagatgtagtgtaccgtattgttgttccgtcaagacagatcgggaaagttattggtaaagcagggcatcgtatacagaagattcgtgaagaaactaaagctactatcaaagttgctgatgctattgctcgtcatgaagagcgagtaattatccttagctccaaagacaatgatgatatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="26525" stop="28261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26825" g_stop="27186" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27187" i_stop="27908" i_length="722">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27909" g_stop="27962" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="416" r_length="54" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E427357" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26825" e_stop="27186"/>
          <exon e_start="27909" e_stop="27962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAATGGCTAATTCGCAGCAAATCGAAACCTCCATAAACCCTAGCCCTAATCCTCCTCCTCCGGGATCCCCACCGCCGGCTGCCGCCGTTGTTTCTCGACCGTCAGATGATGAAACGAATCGTTCCGCCACCGCTAAACGTTCACGGGAGGAATACGCCCCTGCCGCCACGGACGAGGCTGGTTTGTCTGGTGACGATGTGCCGCCGTTGAAGAAGCGGGTTAAGGTTTCTCAAGATGTAGTGTACCGTATTGTTGTTCCTTCAAGACAGATCGGGAAAGTTATTGGTAAAGCAGGGCATCGTATACAGAAGATTCGTGAAGAAACTAAAGCTACTATCAAAGTTGCTGATGCTATCGCTGTGAGTTATGCCATTTCTTGTTCTGTGTTGATGTTTTGTGTTATTAATTGTTAAATTCTTGGAAGCTCGAAATTGATTGTATGCCAAAATTAGGGCTATTTTGCCATTGCATTTGTCCAAGTTTGAGAATTTGTGGAATCCAATTGAGAAAATTCAAGACAAACTTCGTTGAATTGAAGGAATTTGACTATTTGAGAAATTATTTTTGTTGAACTGTTGGCTGAATTCCCTATTGATCAATGAAGTGTGTTGGTATGAGATGAGCTCTAGTGAAGATCAGTGAGGATCATATAACTTGCTGCAATTTGGGTTTAGGATTGAGGCTTAGTTGTTGTTTGGCATGTTGGTTTTGGTTCTCAATTACTCAATGTCAGACTAAGCATAGAGAATTTACTTCTCTGTCAGTGTTTTGGAGAATGAGAAGCGGAAAAGGGGACAAGGGCTCGTTTCACCCAAGCGAGTAACCTAAAGCAGGCACACGTCTTTTCCAACTAAAGCACTATTTAGTACAAAAACAAAAAAATATTAAATATGCATAGATAGATATCCAACAGTTCAATAGGAATAACAACAGAAGGACATGAAAAATTTAGTTGGAACTGAAGTGCTCTCTTTTTCACCATTGCCTTTCTTCACTGCAAAAATGCATTAGCTTCGCTTCCTGCTTTCATCGCTCACTTTTAATAACACTACTTATGCTGTTATGCATTTGGTATTTGCAGCGTCATGAAGAGCGAGTAATTATCATTAGCTCCAGGGACAATGATGATATGTTC</genome_strand>
        <mrna_strand>CTCCAATGGCTAATTCGCAGCAAATCGAAACATCCACAAACCCTAACCCTAATCCTCCTCCTCCGGGATCCCCACCGTCGGCTGCAGCCGTTATTTCTCGACCGTCAGATGAAGAAACGAATCGTTCCGCCACAGCTAAACGTCCACGTGAGGAATACGCCGCCGGCACTACGGACGAGGCTGGTTTGTTGGGGGACGATGTGCCGCCGTTGAAGAAGCGGGTTAAGGTTTCTCAAGATGTAGTGTACCGTATTGTTGTTCCGTCAAGACAGATCGGGAAAGTTATTGGTAAAGCAGGGCATCGTATACAGAAGATTCGTGAAGAAACTAAAGCTACTATCAAAGTTGCTGATGCTATTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCATGAAGAGCGAGTAATTATCCTTAGCTCCAAAGACAATGATGATATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359485" ref_strand="+" ref_description="SGN-E359485 [cLHT-31-L23]">
      <seq>aaaatattgaaactttgaggaattcttctggagcaacgatgacagttcttgctcaacatcagttgcctttgtgtgcatctgctcatgagtctgaccgtgtaatacagcttgctggagacatccctgcggtcttgagagctgaggtagaaattggctgtcaattgaaggataacccccctaaacaagtaatttcgatcagcccgacttacaatcttggttattctcgtgcacctcaaccacatgtggatccatcgttagctgaatatgtaaatctgactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="28652" stop="30884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28952" g_stop="29058" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29059" i_stop="30185" i_length="1127">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30186" g_stop="30244" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="166" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30245" i_stop="30351" i_length="107">
            <donor d_prob="0.864" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30352" g_stop="30443" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="258" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30444" i_stop="30561" i_length="118">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30562" g_stop="30584" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="281" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E359485" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28952" e_stop="29058"/>
          <exon e_start="30186" e_stop="30244"/>
          <exon e_start="30352" e_stop="30443"/>
          <exon e_start="30562" e_stop="30584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATTGAAACTTTGAGGAATTCTTCTGGAGCTACGATCACAGTTCTTGCTCAACATCAGTTGCCTTTGTGTGCATCTGCTCATGAGTCTGACCGTGTAGTACAGGTGAGAAGTTGGTACAATTGGCCATTTTATATTCTAAATTGTTTGCATGTCTATGTTTCACCCATTCAGTGTACTTATGGTTTCTTTGATGAACTACAGTGTGATAGATGTCATATTAAACCATTCATTTCTGAGGTAGATAGTGCAGTATATAGCAGTCAAATGTTAAATACTATGTATGAAACACTGGATGTCTGTCATAGTAAACCTTATAATTTTCTTGAGACAAGTGACAGTTCTATTCAATAAAACCTTGGCCAGCCCAGAAAAAGGTGCTGAGTTGGAAACTTTACAAGCATCAAAAGGTTGCTTAAACCCCTGACCAGAACCCTATACAATTATACATTGTCAATTCAAATATACTAACTCTCCTGCTCCCCCCACATGTTCTGTTTACACCCAAAAAAAAACACTAGCTAAGACAATTCATACTAATTTTCTCGATAGGACTGCTAGTGCCTTCAAATATCTACCATTCCTTTCTTTCCACACTTTCCACCAAATGCAATCAGGAATGATCTTCCACCAGTCCTCCTCCCCACCTCTACTCCCGATACTCCACCAATTGTTCAGCAAGCCAAAGTAGAACTAAGTATTACCCAAGTAAAACCTTATAGTTTTGTTAGTTCTACATTCTGATGTATTGCTTGTACAACGGTGTTTCCCCATCATTGATAGTTATTTTTAAAATCAAATGTTAGTTATTTTACCTTAAAAGAAAACAGGCAAATCTTCACCAAAAAAAGTAAACAGGCAAATCTTATAAAAAGAGCTATTGTTCAACTAACTTCGGTTAAGTTTCTAGCATTATTTGCACATGTATTCGACTTATCACATGCTTTCAAGGGTTCTCTGTCAACTGTAGCTTTAATCATTGTTCATTTGTCTGTTGTTAGCTGAAGTTGTTAGGCAGTTCTGGGATATCATGTGTCATGTATAACCTATATAGCTTTAGTCACTGTTCATTTGTCTGTTAGCTTGAATTTTCTTTGGCAGTTTTGGGACTGTTTTTCCTGTATGGGGAGATTTTTGTTTTGTCTTGGACTAATCTGTTTTTAGCTTATTTCTACCTTTTAAGAGCTTTAGCATTTTAAGCTTGTTTATTTTTGTTTTGCTTCCCAATTCAGCTTGCTGGAGACATCCCTGCAGTCTTGAGAGCTGTGGTAGAAATTGGCTGTCAATTGAGGTTTAGTAAATTTTTTTAATCAAGGAGGTTTAATAAATTTTAATTGGCATAATTAAGCTTTTTTTATCATTCTAAAACTATTTAATCCTAATATGTACATTTGACAGGGATAACCCCCCTAAACAAGTAATTTCGATCAGCCCGACTTACAATCTTGGTTATTCTCGTCCACCTCAACCACATGTGGATCCATCTTCAGGTAATCAATCTTCTCTTATAGTATATTTGAGCTTCTGGACTGATACACTTGATGCTATATGAAATTTGAGTTGTATAGTTATAATAATAACATCATCATTGGGACTACACTCTTGCAGCTGAATATGTAAATCTGACTATG</genome_strand>
        <mrna_strand>AAAATATTGAAACTTTGAGGAATTCTTCTGGAGCAACGATGACAGTTCTTGCTCAACATCAGTTGCCTTTGTGTGCATCTGCTCATGAGTCTGACCGTGTAATACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTGGAGACATCCCTGCGGTCTTGAGAGCTGAGGTAGAAATTGGCTGTCAATTGAA...........................................................................................................GGATAACCCCCCTAAACAAGTAATTTCGATCAGCCCGACTTACAATCTTGGTTATTCTCGTGCACCTCAACCACATGTGGATCCATCGTTAG......................................................................................................................CTGAATATGTAAATCTGACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409236" ref_strand="+" ref_description="SGN-E409236 [PPI-13-D3]">
      <seq>gtctgatcgtgtagtacagcttgcaggagacatccctgcggtcttgagagctgtggtagaaattggctgtcaattgagggataacccccctaaacaagtaatttcgatcagcccgacatacaatcttggttattctcgcgcacctcaaccacaggtggatccatcttcagctgaatatgttaatctgactatgttagttcccgaatcattagctggtgggttgattggaaggtgcggctccaatatttcacggatccgtgcagagtctggagcaactattaaggtacatggcgggaaaggtgagcagaaacaaagacaagtccatcttggtggtagtgcacaacaggtcgcccttgcaaagcaaagagttgatgaatatgtctattcccagttgatgttacaagctggtggtgagcagctacaggatacaatgcagctccagcagcagtctatgcagctgcaacagtctatgcagttgcaacattcaatgcagatgcaacaacaaatatccaacacatctgctacgctgatgccagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="29879" stop="31634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30186" g_stop="30244" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="78" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30245" i_stop="30351" i_length="107">
            <donor d_prob="0.864" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30352" g_stop="30443" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="170" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30444" i_stop="30561" i_length="118">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30562" g_stop="30674" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="283" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30675" i_stop="30747" i_length="73">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30748" g_stop="30810" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="346" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30811" i_stop="31044" i_length="234">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31045" g_stop="31205" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="507" r_length="161" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31206" i_stop="31304" i_length="99">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31305" g_stop="31334" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="537" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E409236" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30186" e_stop="30244"/>
          <exon e_start="30352" e_stop="30443"/>
          <exon e_start="30562" e_stop="30674"/>
          <exon e_start="30748" e_stop="30810"/>
          <exon e_start="31045" e_stop="31205"/>
          <exon e_start="31305" e_stop="31334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGGAGACATCCCTGCAGTCTTGAGAGCTGTGGTAGAAATTGGCTGTCAATTGAGGTTTAGTAAATTTTTTTAATCAAGGAGGTTTAATAAATTTTAATTGGCATAATTAAGCTTTTTTTATCATTCTAAAACTATTTAATCCTAATATGTACATTTGACAGGGATAACCCCCCTAAACAAGTAATTTCGATCAGCCCGACTTACAATCTTGGTTATTCTCGTCCACCTCAACCACATGTGGATCCATCTTCAGGTAATCAATCTTCTCTTATAGTATATTTGAGCTTCTGGACTGATACACTTGATGCTATATGAAATTTGAGTTGTATAGTTATAATAATAACATCATCATTGGGACTACACTCTTGCAGCTGAATATGTAAATCTGACTATGTTAGTTCCCGAATCATTAGCTGGTGGGTTGATTGGAAGGTGCGGCTCCAATATTTCAAGGATCCGTGCAGAGTCTGGAGCGACAATTAAGGTGCATAAATTGCCTTGTCAGATCTTTTGGATTCATCTCTTGTTGTTTTAATGTTTGTGGTCTTGCTTTGTAGGTACATGGTGGGAAAGGCGAGCAGAAACAAAGACAAGTTCACCTTGGTGGTAGTGCACAACAGGTGAAACTTAGTTTCTATGTCTCACTTCTTTTTGGTGAGCTGCAGTTGTATGTCACCCTTTAGTTTTATTTGATAATATTGCTTATAAAATGGAACCGTCTTTGGAGTACTTAGTCTTAGAATAAGCATAAAGATCTTTGACTAGACTCTTGTAATTTAAATACCTTGGAAAAGGTCAATCAATGAGATATCAAGGGATTCCGATTGTGTTTAATATATTTTTCTGCTTAACAGGTCGCCCTTGCAAAGCAAAGAGTTGATGAATATGTCTATTCCCAGTTGATGTTACAAGCTGGTGGTGAGCAGTTACAGGATACAATGCAGCTCCAGCAGCAGTCTATGCAGCTGCAACAGTCGATGCATTTGCAACATTCAATGCAGATGCAACAACAAATGTAATTTTTTGTGTACCCTAACTCATAATTGGTGAAGTTTTATATAAATAGCTTAAGACTCCTGTCTGGCATCTAACTTTTCAATGTTGCTTGATGCAGACCCAACACATCTGCTACGCTGATGCCAGG</genome_strand>
        <mrna_strand>CTTGCAGGAGACATCCCTGCGGTCTTGAGAGCTGTGGTAGAAATTGGCTGTCAATTGAG...........................................................................................................GGATAACCCCCCTAAACAAGTAATTTCGATCAGCCCGACATACAATCTTGGTTATTCTCGCGCACCTCAACCACAGGTGGATCCATCTTCAG......................................................................................................................CTGAATATGTTAATCTGACTATGTTAGTTCCCGAATCATTAGCTGGTGGGTTGATTGGAAGGTGCGGCTCCAATATTTCACGGATCCGTGCAGAGTCTGGAGCAACTATTAAG.........................................................................GTACATGGCGGGAAAGGTGAGCAGAAACAAAGACAAGTCCATCTTGGTGGTAGTGCACAACAG..........................................................................................................................................................................................................................................GTCGCCCTTGCAAAGCAAAGAGTTGATGAATATGTCTATTCCCAGTTGATGTTACAAGCTGGTGGTGAGCAGCTACAGGATACAATGCAGCTCCAGCAGCAGTCTATGCAGCTGCAACAGTCTATGCAGTTGCAACATTCAATGCAGATGCAACAACAAAT...................................................................................................ATCCAACACATCTGCTACGCTGATGCCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262374" ref_strand="+" ref_description="SGN-E262374 [cLEG-56-G21]">
      <seq>ggtagtgcacaacaggtcgcccttgcaaagcaaagagttgatgaatatgtctattcccagttgatgttacaagctggtggtgagcagttacaggatacaatgcagctccagcagcagtctatgcagctgcaacagtcgacgcatttgcaacattcaatgcagatgcaacaacaaatacccaacacatctgctacgctgatgccaggatataatcatggtcatggagtttatatgaacagtaaccaagaagctcatatgatggcatcatacccacaagtctacacatcaaccaaccctcaagctcccggttactatggtcagtcttatccagctccacagatgtagaagcaaaaggaggtctttctcatacatcttttcaatcagatgattgatatacacaatgtagacaatttcttgttgtgtcattatttgggtttctgatataagcattggagatggtcggtttcggccaggatgtctcttgttgatgttgcgacatagtttgcatgagatcacttaattcgtggaatattgatggaaaagtttatgcttaaagttttacgatcagcgaatctagtacgcctctgggagcggcagatctactgaagggagcttatagtagcagttgcattgaaggtataagcatagccctctggatcttctgcccctttgatctcctctggttcaccctgcccgatcctgccccttgaaaaagctccaaaccccgccctggtttacctttgctgcttgattttcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="30735" stop="32506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30796" g_stop="30810" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30811" i_stop="31044" i_length="234">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31045" g_stop="31205" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="176" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31206" i_stop="31304" i_length="99">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31305" g_stop="31367" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="239" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31368" i_stop="31683" i_length="316">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31684" g_stop="32206" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="760" r_length="521" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E262374" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30796" e_stop="30810"/>
          <exon e_start="31045" e_stop="31205"/>
          <exon e_start="31305" e_stop="31367"/>
          <exon e_start="31684" e_stop="32206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGTGCACAACAGGTGAAACTTAGTTTCTATGTCTCACTTCTTTTTGGTGAGCTGCAGTTGTATGTCACCCTTTAGTTTTATTTGATAATATTGCTTATAAAATGGAACCGTCTTTGGAGTACTTAGTCTTAGAATAAGCATAAAGATCTTTGACTAGACTCTTGTAATTTAAATACCTTGGAAAAGGTCAATCAATGAGATATCAAGGGATTCCGATTGTGTTTAATATATTTTTCTGCTTAACAGGTCGCCCTTGCAAAGCAAAGAGTTGATGAATATGTCTATTCCCAGTTGATGTTACAAGCTGGTGGTGAGCAGTTACAGGATACAATGCAGCTCCAGCAGCAGTCTATGCAGCTGCAACAGTCGATGCATTTGCAACATTCAATGCAGATGCAACAACAAATGTAATTTTTTGTGTACCCTAACTCATAATTGGTGAAGTTTTATATAAATAGCTTAAGACTCCTGTCTGGCATCTAACTTTTCAATGTTGCTTGATGCAGACCCAACACATCTGCTACGCTGATGCCAGGATATAATCATGGTCATGGAGTTTATATGAACAGGTAAGTTGCATACAAATTGTCCTTGTAAAAGCTGATTGTTATCCCATTACAAGTATCAAAAAGTTTCTGGTAATTTTTTGTGTCATAGTAAAATGAGCGAAATTTTTGCTACAGTTAAGTTGACGGTCTGATACTGACCCTAAGGGTGATTATGACATTTCTTTCTCATGCTCCAGTGGACCTAATCATTAGCTCTTTCAGAGTTGGTTTTTGGGTCAATAACTTGGATGCTTTGCTAGGATTTCTTATCCACTGGTTGTAGACTATTTACTTTGCTAGTTGATGGAATGACAATAGTCTATCCTTGTATTTGCAGTAACCAAGAAGCTCATATGATGGCATCATACCCACAAGTCTACACATCAACCAACCCTCAAGCTCCCGGTTACTATGGTCAGTCTTATCCAGCTCCACAGATGTAGAAGCAAAAGGAGGTCTTTCTCATACATCTTTTCAATCAGATGATTGATATACACAATGTAGACAATTTCTTGTTGTGTCATTATTTGGGTTTCTGATATAAGCATTGGAGATGGTCGGTTTCGGCCAGGATGTCTCTTGTTGATGTTGCGACATAGTTTGCATGAGATCACTTAATTCGTGGAATATTGATGGAAAAGTTTATGCTTAAAGTTTTACGATCAGCGAATCTAGTACGCCTCTGGGAGCGGCAGATCTACTGAAGGGAGCTTATAGTAGCAGTTGCATTGAAGGTATAAGCATAGCCCTCTGGATCTTCTGCCCCTTTGATCTCCTCTGGTTCCACCCTGCCCGATCCTGCCCCTTGAAAAAGCTCCCAAACCCCGCCCTGGTTTACCTTTGCTGCTTGATTTTCATTT</genome_strand>
        <mrna_strand>GGTAGTGCACAACAG..........................................................................................................................................................................................................................................GTCGCCCTTGCAAAGCAAAGAGTTGATGAATATGTCTATTCCCAGTTGATGTTACAAGCTGGTGGTGAGCAGTTACAGGATACAATGCAGCTCCAGCAGCAGTCTATGCAGCTGCAACAGTCGACGCATTTGCAACATTCAATGCAGATGCAACAACAAAT...................................................................................................ACCCAACACATCTGCTACGCTGATGCCAGGATATAATCATGGTCATGGAGTTTATATGAACAG............................................................................................................................................................................................................................................................................................................................TAACCAAGAAGCTCATATGATGGCATCATACCCACAAGTCTACACATCAACCAACCCTCAAGCTCCCGGTTACTATGGTCAGTCTTATCCAGCTCCACAGATGTAGAAGCAAAAGGAGGTCTTTCTCATACATCTTTTCAATCAGATGATTGATATACACAATGTAGACAATTTCTTGTTGTGTCATTATTTGGGTTTCTGATATAAGCATTGGAGATGGTCGGTTTCGGCCAGGATGTCTCTTGTTGATGTTGCGACATAGTTTGCATGAGATCACTTAATTCGTGGAATATTGATGGAAAAGTTTATGCTTAAAGTTTTACGATCAGCGAATCTAGTACGCCTCTGGGAGCGGCAGATCTACTGAAGGGAGCTTATAGTAGCAGTTGCATTGAAGGTATAAGCATAGCCCTCTGGATCTTCTGCCCCTTTGATCTCCTCTGGTT-CACCCTGCCCGATCCTGCCCCTTGAAAAAGCT-CCAAACCCCGCCCTGGTTTACCTTTGCTGCTTGATTTTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258428" ref_strand="+" ref_description="SGN-E258428 [cLEG-47-O2]">
      <seq>ggtagtgcacaacaggtcgcccttgcaaagcaaagagttgatgaatatgtctattcccagttgatgttacaagctggtggtgagcagttacaggatacaatgcagctccagcagcagtctatgcagctgcaacagtcgacgcatttgcaacattcaatgcagatgcaacaacaaatacccaacacatctgctacgctgatgccaggatataatcatggtcatggagtttatatgaacagtaaccaagaagctcatatgatggcatcatacccacaagtctacacatcaaccaaccctcaagctcccggttactatggtcagtcttatccagctccacagatgtagaagcaaaaggaggtctttctcatacatcttttcaatcagatgattgatatacacaatgtagacaatttcttgttgtgtcattatttgggtttctgatataagcattggagatggtcggtttcggccaggatgtctcttgttgatgttgcgacatagtttgcatgagatcacttaattcgtggaatattgatggaaaagtttatgcttaaagttttacgatcagcgaatctagtacgcctctgggagcggcagatctactgaaaggagcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="30735" stop="32361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30796" g_stop="30810" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30811" i_stop="31044" i_length="234">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31045" g_stop="31205" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="176" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31206" i_stop="31304" i_length="99">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31305" g_stop="31367" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="239" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31368" i_stop="31683" i_length="316">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31684" g_stop="32061" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="617" r_length="378" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E258428" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30796" e_stop="30810"/>
          <exon e_start="31045" e_stop="31205"/>
          <exon e_start="31305" e_stop="31367"/>
          <exon e_start="31684" e_stop="32061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGTGCACAACAGGTGAAACTTAGTTTCTATGTCTCACTTCTTTTTGGTGAGCTGCAGTTGTATGTCACCCTTTAGTTTTATTTGATAATATTGCTTATAAAATGGAACCGTCTTTGGAGTACTTAGTCTTAGAATAAGCATAAAGATCTTTGACTAGACTCTTGTAATTTAAATACCTTGGAAAAGGTCAATCAATGAGATATCAAGGGATTCCGATTGTGTTTAATATATTTTTCTGCTTAACAGGTCGCCCTTGCAAAGCAAAGAGTTGATGAATATGTCTATTCCCAGTTGATGTTACAAGCTGGTGGTGAGCAGTTACAGGATACAATGCAGCTCCAGCAGCAGTCTATGCAGCTGCAACAGTCGATGCATTTGCAACATTCAATGCAGATGCAACAACAAATGTAATTTTTTGTGTACCCTAACTCATAATTGGTGAAGTTTTATATAAATAGCTTAAGACTCCTGTCTGGCATCTAACTTTTCAATGTTGCTTGATGCAGACCCAACACATCTGCTACGCTGATGCCAGGATATAATCATGGTCATGGAGTTTATATGAACAGGTAAGTTGCATACAAATTGTCCTTGTAAAAGCTGATTGTTATCCCATTACAAGTATCAAAAAGTTTCTGGTAATTTTTTGTGTCATAGTAAAATGAGCGAAATTTTTGCTACAGTTAAGTTGACGGTCTGATACTGACCCTAAGGGTGATTATGACATTTCTTTCTCATGCTCCAGTGGACCTAATCATTAGCTCTTTCAGAGTTGGTTTTTGGGTCAATAACTTGGATGCTTTGCTAGGATTTCTTATCCACTGGTTGTAGACTATTTACTTTGCTAGTTGATGGAATGACAATAGTCTATCCTTGTATTTGCAGTAACCAAGAAGCTCATATGATGGCATCATACCCACAAGTCTACACATCAACCAACCCTCAAGCTCCCGGTTACTATGGTCAGTCTTATCCAGCTCCACAGATGTAGAAGCAAAAGGAGGTCTTTCTCATACATCTTTTCAATCAGATGATTGATATACACAATGTAGACAATTTCTTGTTGTGTCATTATTTGGGTTTCTGATATAAGCATTGGAGATGGTCGGTTTCGGCCAGGATGTCTCTTGTTGATGTTGCGACATAGTTTGCATGAGATCACTTAATTCGTGGAATATTGATGGAAAAGTTTATGCTTAAAGTTTTACGATCAGCGAATCTAGTACGCCTCTGGGAGCGGCAGATCTACTGAAGGGAGCTTAT</genome_strand>
        <mrna_strand>GGTAGTGCACAACAG..........................................................................................................................................................................................................................................GTCGCCCTTGCAAAGCAAAGAGTTGATGAATATGTCTATTCCCAGTTGATGTTACAAGCTGGTGGTGAGCAGTTACAGGATACAATGCAGCTCCAGCAGCAGTCTATGCAGCTGCAACAGTCGACGCATTTGCAACATTCAATGCAGATGCAACAACAAAT...................................................................................................ACCCAACACATCTGCTACGCTGATGCCAGGATATAATCATGGTCATGGAGTTTATATGAACAG............................................................................................................................................................................................................................................................................................................................TAACCAAGAAGCTCATATGATGGCATCATACCCACAAGTCTACACATCAACCAACCCTCAAGCTCCCGGTTACTATGGTCAGTCTTATCCAGCTCCACAGATGTAGAAGCAAAAGGAGGTCTTTCTCATACATCTTTTCAATCAGATGATTGATATACACAATGTAGACAATTTCTTGTTGTGTCATTATTTGGGTTTCTGATATAAGCATTGGAGATGGTCGGTTTCGGCCAGGATGTCTCTTGTTGATGTTGCGACATAGTTTGCATGAGATCACTTAATTCGTGGAATATTGATGGAAAAGTTTATGCTTAAAGTTTTACGATCAGCGAATCTAGTACGCCTCTGGGAGCGGCAGATCTACTGAAAGGAGCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257269" ref_strand="+" ref_description="SGN-E257269 [cLEG-46-O19]">
      <seq>ggtagtgcacaacaggtcgcccttgcaaagcaaagagttgatgaatatgtctattcccagttgatgttacaagctggtggtgagcagttacaggatacaatgcagctccagcagcagtctatgcagctgcaacagtcgacgcatttgcaacattcaatgcagatgcaacaacaaatacccaacacatctgctacgctgatgccaggatataatcatggtcatggagtttatatgaacagtaaccaagaagctcatatgatggcatcatacccacaagtctacacatcaaccaaccctcaagctcccggttactatggtcagtcttatccagctccacagatgtagaagcaaaaggaggtctttctcatacatcttttcaatcagatgattgatatacacaatgtagacaatttcttgttgtgtcattatttgggtttctgatataagcattggagatggtcggtttcggccaggatgtctcttgttgatgttgcgacatagtttgcatgagatcacttaattcgtgggatattgatggaaaagtttatgcttaaagttttacgatcagcgaatctagtacgcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="30735" stop="32330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30796" g_stop="30810" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30811" i_stop="31044" i_length="234">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31045" g_stop="31205" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="176" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31206" i_stop="31304" i_length="99">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31305" g_stop="31367" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="239" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31368" i_stop="31683" i_length="316">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31684" g_stop="32030" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="586" r_length="347" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E257269" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30796" e_stop="30810"/>
          <exon e_start="31045" e_stop="31205"/>
          <exon e_start="31305" e_stop="31367"/>
          <exon e_start="31684" e_stop="32030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGTGCACAACAGGTGAAACTTAGTTTCTATGTCTCACTTCTTTTTGGTGAGCTGCAGTTGTATGTCACCCTTTAGTTTTATTTGATAATATTGCTTATAAAATGGAACCGTCTTTGGAGTACTTAGTCTTAGAATAAGCATAAAGATCTTTGACTAGACTCTTGTAATTTAAATACCTTGGAAAAGGTCAATCAATGAGATATCAAGGGATTCCGATTGTGTTTAATATATTTTTCTGCTTAACAGGTCGCCCTTGCAAAGCAAAGAGTTGATGAATATGTCTATTCCCAGTTGATGTTACAAGCTGGTGGTGAGCAGTTACAGGATACAATGCAGCTCCAGCAGCAGTCTATGCAGCTGCAACAGTCGATGCATTTGCAACATTCAATGCAGATGCAACAACAAATGTAATTTTTTGTGTACCCTAACTCATAATTGGTGAAGTTTTATATAAATAGCTTAAGACTCCTGTCTGGCATCTAACTTTTCAATGTTGCTTGATGCAGACCCAACACATCTGCTACGCTGATGCCAGGATATAATCATGGTCATGGAGTTTATATGAACAGGTAAGTTGCATACAAATTGTCCTTGTAAAAGCTGATTGTTATCCCATTACAAGTATCAAAAAGTTTCTGGTAATTTTTTGTGTCATAGTAAAATGAGCGAAATTTTTGCTACAGTTAAGTTGACGGTCTGATACTGACCCTAAGGGTGATTATGACATTTCTTTCTCATGCTCCAGTGGACCTAATCATTAGCTCTTTCAGAGTTGGTTTTTGGGTCAATAACTTGGATGCTTTGCTAGGATTTCTTATCCACTGGTTGTAGACTATTTACTTTGCTAGTTGATGGAATGACAATAGTCTATCCTTGTATTTGCAGTAACCAAGAAGCTCATATGATGGCATCATACCCACAAGTCTACACATCAACCAACCCTCAAGCTCCCGGTTACTATGGTCAGTCTTATCCAGCTCCACAGATGTAGAAGCAAAAGGAGGTCTTTCTCATACATCTTTTCAATCAGATGATTGATATACACAATGTAGACAATTTCTTGTTGTGTCATTATTTGGGTTTCTGATATAAGCATTGGAGATGGTCGGTTTCGGCCAGGATGTCTCTTGTTGATGTTGCGACATAGTTTGCATGAGATCACTTAATTCGTGGAATATTGATGGAAAAGTTTATGCTTAAAGTTTTACGATCAGCGAATCTAGTACGCCTCT</genome_strand>
        <mrna_strand>GGTAGTGCACAACAG..........................................................................................................................................................................................................................................GTCGCCCTTGCAAAGCAAAGAGTTGATGAATATGTCTATTCCCAGTTGATGTTACAAGCTGGTGGTGAGCAGTTACAGGATACAATGCAGCTCCAGCAGCAGTCTATGCAGCTGCAACAGTCGACGCATTTGCAACATTCAATGCAGATGCAACAACAAAT...................................................................................................ACCCAACACATCTGCTACGCTGATGCCAGGATATAATCATGGTCATGGAGTTTATATGAACAG............................................................................................................................................................................................................................................................................................................................TAACCAAGAAGCTCATATGATGGCATCATACCCACAAGTCTACACATCAACCAACCCTCAAGCTCCCGGTTACTATGGTCAGTCTTATCCAGCTCCACAGATGTAGAAGCAAAAGGAGGTCTTTCTCATACATCTTTTCAATCAGATGATTGATATACACAATGTAGACAATTTCTTGTTGTGTCATTATTTGGGTTTCTGATATAAGCATTGGAGATGGTCGGTTTCGGCCAGGATGTCTCTTGTTGATGTTGCGACATAGTTTGCATGAGATCACTTAATTCGTGGGATATTGATGGAAAAGTTTATGCTTAAAGTTTTACGATCAGCGAATCTAGTACGCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259450" ref_strand="+" ref_description="SGN-E259450 [cLEG-42-E3]">
      <seq>ggtagtgcacaacaggtcgcccttgcaaagcaaagagttgatgaatatgtctattcccagttgatgttacaagctggtggtgagcagttacaggatacaatgcagctccagcagcagtctatgcagctgcaacagtcgacgcatttgcaacattcaatgcagatgcaacaacaaatacccaacacatctgctacgctgatgccaggatataatcatggtcatggagtttatatgaaccagtaaccaagaagctcatatgatggcatcatacccacaagtctacacatcaaccaaccctcaagctcccggttactatggtcagtcttatccagctccacagatgtagaagcaaaaggaggtctttctcataccatcttttcaatcagatgattgatatacacaatgtagacaatttcttgttgtgtcattatttgggtttctgatataagcattggagatggtcggtttcggccaggatgtctcttgttgatgttgcgacatagtttgcatgagatcacttaattcgtggaatattgatggaaaagtttatgcttaaagttttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="30735" stop="32307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30796" g_stop="30810" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30811" i_stop="31044" i_length="234">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31045" g_stop="31205" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="176" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31206" i_stop="31304" i_length="99">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31305" g_stop="31367" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="240" r_length="64" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31368" i_stop="31683" i_length="316">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31684" g_stop="32007" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="565" r_length="325" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E259450" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30796" e_stop="30810"/>
          <exon e_start="31045" e_stop="31205"/>
          <exon e_start="31305" e_stop="31367"/>
          <exon e_start="31684" e_stop="32007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGTGCACAACAGGTGAAACTTAGTTTCTATGTCTCACTTCTTTTTGGTGAGCTGCAGTTGTATGTCACCCTTTAGTTTTATTTGATAATATTGCTTATAAAATGGAACCGTCTTTGGAGTACTTAGTCTTAGAATAAGCATAAAGATCTTTGACTAGACTCTTGTAATTTAAATACCTTGGAAAAGGTCAATCAATGAGATATCAAGGGATTCCGATTGTGTTTAATATATTTTTCTGCTTAACAGGTCGCCCTTGCAAAGCAAAGAGTTGATGAATATGTCTATTCCCAGTTGATGTTACAAGCTGGTGGTGAGCAGTTACAGGATACAATGCAGCTCCAGCAGCAGTCTATGCAGCTGCAACAGTCGATGCATTTGCAACATTCAATGCAGATGCAACAACAAATGTAATTTTTTGTGTACCCTAACTCATAATTGGTGAAGTTTTATATAAATAGCTTAAGACTCCTGTCTGGCATCTAACTTTTCAATGTTGCTTGATGCAGACCCAACACATCTGCTACGCTGATGCCAGGATATAATCATGGTCATGGAGTTTATATGAA-CAGGTAAGTTGCATACAAATTGTCCTTGTAAAAGCTGATTGTTATCCCATTACAAGTATCAAAAAGTTTCTGGTAATTTTTTGTGTCATAGTAAAATGAGCGAAATTTTTGCTACAGTTAAGTTGACGGTCTGATACTGACCCTAAGGGTGATTATGACATTTCTTTCTCATGCTCCAGTGGACCTAATCATTAGCTCTTTCAGAGTTGGTTTTTGGGTCAATAACTTGGATGCTTTGCTAGGATTTCTTATCCACTGGTTGTAGACTATTTACTTTGCTAGTTGATGGAATGACAATAGTCTATCCTTGTATTTGCAGTAACCAAGAAGCTCATATGATGGCATCATACCCACAAGTCTACACATCAACCAACCCTCAAGCTCCCGGTTACTATGGTCAGTCTTATCCAGCTCCACAGATGTAGAAGCAAAAGGAGGTCTTTCTCATA-CATCTTTTCAATCAGATGATTGATATACACAATGTAGACAATTTCTTGTTGTGTCATTATTTGGGTTTCTGATATAAGCATTGGAGATGGTCGGTTTCGGCCAGGATGTCTCTTGTTGATGTTGCGACATAGTTTGCATGAGATCACTTAATTCGTGGAATATTGATGGAAAAGTTTATGCTTAAAGTTTTACG</genome_strand>
        <mrna_strand>GGTAGTGCACAACAG..........................................................................................................................................................................................................................................GTCGCCCTTGCAAAGCAAAGAGTTGATGAATATGTCTATTCCCAGTTGATGTTACAAGCTGGTGGTGAGCAGTTACAGGATACAATGCAGCTCCAGCAGCAGTCTATGCAGCTGCAACAGTCGACGCATTTGCAACATTCAATGCAGATGCAACAACAAAT...................................................................................................ACCCAACACATCTGCTACGCTGATGCCAGGATATAATCATGGTCATGGAGTTTATATGAACCAG............................................................................................................................................................................................................................................................................................................................TAACCAAGAAGCTCATATGATGGCATCATACCCACAAGTCTACACATCAACCAACCCTCAAGCTCCCGGTTACTATGGTCAGTCTTATCCAGCTCCACAGATGTAGAAGCAAAAGGAGGTCTTTCTCATACCATCTTTTCAATCAGATGATTGATATACACAATGTAGACAATTTCTTGTTGTGTCATTATTTGGGTTTCTGATATAAGCATTGGAGATGGTCGGTTTCGGCCAGGATGTCTCTTGTTGATGTTGCGACATAGTTTGCATGAGATCACTTAATTCGTGGAATATTGATGGAAAAGTTTATGCTTAAAGTTTTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368307" ref_strand="+" ref_description="SGN-E368307 [TUS-26-K10]">
      <seq>gtagtgcacaacaggtcgcccttgctaagcaaagagttgatgaatatgtctattcccagttgatgttacaagctggtggcgagcagttacaggatacaatgcagctccagcagcagtctatgcagctgcaacagtcgacgcatttgcaacattcaatgcaaatgcaacatcaaatacccaacacatctgctacgctgatgccaggatataatcatggtcatggagtttatatgaacagtaaccaagaatctcatatgatggcatcatacccacaagtctacacatcaaccaaccctcaagctcccggttactatggtcagtcttatccagctccacagatgtagaagcaaaaggaggtctttctcatacatcttttcaatcatatgattgatatacacaatgtagacaatttcttgttgtgacattatttgggtttctgatataagcattggagatggtcggtttcggccaggatgtctcttgttgatgttgcgacatagtttgcatgagatcacttaattcgtggaatattgatggaaaagtttatgcttaaaggtttacgatcagcgaatctagtacgcctctgggagcggcagatctactgaagggagcttatagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="30735" stop="32366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30797" g_stop="30810" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30811" i_stop="31044" i_length="234">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31045" g_stop="31205" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="175" r_length="161" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31206" i_stop="31304" i_length="99">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31305" g_stop="31367" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="238" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31368" i_stop="31683" i_length="316">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31684" g_stop="32066" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="621" r_length="383" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E368307" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30797" e_stop="30810"/>
          <exon e_start="31045" e_stop="31205"/>
          <exon e_start="31305" e_stop="31367"/>
          <exon e_start="31684" e_stop="32066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTGCACAACAGGTGAAACTTAGTTTCTATGTCTCACTTCTTTTTGGTGAGCTGCAGTTGTATGTCACCCTTTAGTTTTATTTGATAATATTGCTTATAAAATGGAACCGTCTTTGGAGTACTTAGTCTTAGAATAAGCATAAAGATCTTTGACTAGACTCTTGTAATTTAAATACCTTGGAAAAGGTCAATCAATGAGATATCAAGGGATTCCGATTGTGTTTAATATATTTTTCTGCTTAACAGGTCGCCCTTGCAAAGCAAAGAGTTGATGAATATGTCTATTCCCAGTTGATGTTACAAGCTGGTGGTGAGCAGTTACAGGATACAATGCAGCTCCAGCAGCAGTCTATGCAGCTGCAACAGTCGATGCATTTGCAACATTCAATGCAGATGCAACAACAAATGTAATTTTTTGTGTACCCTAACTCATAATTGGTGAAGTTTTATATAAATAGCTTAAGACTCCTGTCTGGCATCTAACTTTTCAATGTTGCTTGATGCAGACCCAACACATCTGCTACGCTGATGCCAGGATATAATCATGGTCATGGAGTTTATATGAACAGGTAAGTTGCATACAAATTGTCCTTGTAAAAGCTGATTGTTATCCCATTACAAGTATCAAAAAGTTTCTGGTAATTTTTTGTGTCATAGTAAAATGAGCGAAATTTTTGCTACAGTTAAGTTGACGGTCTGATACTGACCCTAAGGGTGATTATGACATTTCTTTCTCATGCTCCAGTGGACCTAATCATTAGCTCTTTCAGAGTTGGTTTTTGGGTCAATAACTTGGATGCTTTGCTAGGATTTCTTATCCACTGGTTGTAGACTATTTACTTTGCTAGTTGATGGAATGACAATAGTCTATCCTTGTATTTGCAGTAACCAAGAAGCTCATATGATGGCATCATACCCACAAGTCTACACATCAACCAACCCTCAAGCTCCCGGTTACTATGGTCAGTCTTATCCAGCTCCACAGATGTAGAAGCAAAAGGAGGTCTTTCTCATACATCTTTTCAATCAGATGATTGATATACACAATGTAGACAATTTCTTGTTGTGTCATTATTTGGGTTTCTGATATAAGCATTGGAGATGGTCGGTTTCGGCCAGGATGTCTCTTGTTGATGTTGCGACATAGTTTGCATGAGATCACTTAATTCGTGGAATATTGATGGAAAAGTTTATGCTTAAAGTTTTACGATCAGCGAATCTAGTACGCCTCTGGGAGCGGCAGATCTACTGAAGGGAGCTTATAGTAG</genome_strand>
        <mrna_strand>GTAGTGCACAACAG..........................................................................................................................................................................................................................................GTCGCCCTTGCTAAGCAAAGAGTTGATGAATATGTCTATTCCCAGTTGATGTTACAAGCTGGTGGCGAGCAGTTACAGGATACAATGCAGCTCCAGCAGCAGTCTATGCAGCTGCAACAGTCGACGCATTTGCAACATTCAATGCAAATGCAACATCAAAT...................................................................................................ACCCAACACATCTGCTACGCTGATGCCAGGATATAATCATGGTCATGGAGTTTATATGAACAG............................................................................................................................................................................................................................................................................................................................TAACCAAGAATCTCATATGATGGCATCATACCCACAAGTCTACACATCAACCAACCCTCAAGCTCCCGGTTACTATGGTCAGTCTTATCCAGCTCCACAGATGTAGAAGCAAAAGGAGGTCTTTCTCATACATCTTTTCAATCATATGATTGATATACACAATGTAGACAATTTCTTGTTGTGACATTATTTGGGTTTCTGATATAAGCATTGGAGATGGTCGGTTTCGGCCAGGATGTCTCTTGTTGATGTTGCGACATAGTTTGCATGAGATCACTTAATTCGTGGAATATTGATGGAAAAGTTTATGCTTAAAGGTTTACGATCAGCGAATCTAGTACGCCTCTGGGAGCGGCAGATCTACTGAAGGGAGCTTATAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E609133" ref_strand="+" ref_description="SGN-E609133 [25134]">
      <seq>gctccacaaatgtagaagcaaaggggatctttctcgtacagcttttcaatcagatgattgatatacacaatgtagacaatttcttgttgtgtcattatttgggtttctgatataagcattggagatggtcgtttcggccaggatgtctcttgttgatgttgcaacatagtttgcatgagatcacttaattcgtggaatattgatggaaaagtttatgcttaaagttttacgatcagcgaatctagtacgtctctgggagcggcaaatctactgaagggagcttataatagcagttgcattgaagaacagaaacagggatgcattgcacgtcagacgcagtcacctcccattgaactgatttctgaagaacttttaaaaagcacttcgtgtgaatgatttagaaatgagatgatcaggagtgatggaccgatggagaagcagagctcaggacaatgggctgcagcaaaaagattgaccctaattcatcggttcaattatttcattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="31475" stop="32742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31775" g_stop="32080" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32081" i_stop="32231" i_length="151">
            <donor d_prob="0.640" d_score="0.96"/>
            <acceptor a_prob="0.907" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32232" g_stop="32442" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="507" r_length="203" r_score="0.810"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E609133" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31775" e_stop="32080"/>
          <exon e_start="32232" e_stop="32442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCACAGATGTAGAAGCAAAAGGAGGTCTTTCTCATACATCTTTTCAATCAGATGATTGATATACACAATGTAGACAATTTCTTGTTGTGTCATTATTTGGGTTTCTGATATAAGCATTGGAGATGGTCGGTTTCGGCCAGGATGTCTCTTGTTGATGTTGCGACATAGTTTGCATGAGATCACTTAATTCGTGGAATATTGATGGAAAAGTTTATGCTTAAAGTTTTACGATCAGCGAATCTAGTACGCCTCTGGGAGCGGCAGATCTACTGAAGGGAGCTTATAGTAGCAGTTGCATTGAAGGTATAAGCATAGCCCTCTGGATCTTCTGCCCCTTTGATCTCCTCTGGTTCCACCCTGCCCGATCCTGCCCCTTGAAAAAGCTCCCAAACCCCGCCCTGGTTTACCTTTGCTGCTTGATTTTCATTTAGCTCTGTTGTTTCCATCAGAACAGAAACAGGTATGTGAGAGAATGCATTGCACATCAGACGCGGTCACCTCCCATTGAACTGATTTCTGAAGAACTTGTAAAAAGCACTTTGTGCGAATGATTTAGAAATGAGATGATCAGGAATGATGGATGAGGGGGGGCCGACGGAGAAGCAGAGCTCAGGACAACAGCAAAAAGATTGACACAAGTTCATCGGTTCAATTATTTCTTTTTG</genome_strand>
        <mrna_strand>GCTCCACAAATGTAGAAGC-AAAGGGGATCTTTCTCGTACAGCTTTTCAATCAGATGATTGATATACACAATGTAGACAATTTCTTGTTGTGTCATTATTTGGGTTTCTGATATAAGCATTGGAGATGGTC-GTTTCGGCCAGGATGTCTCTTGTTGATGTTGCAACATAGTTTGCATGAGATCACTTAATTCGTGGAATATTGATGGAAAAGTTTATGCTTAAAGTTTTACGATCAGCGAATCTAGTACGTCTCTGGGAGCGGCAAATCTACTGAAGGGAGCTTATAATAGCAGTTGCATTGAAG.......................................................................................................................................................-AACA-G-A-AACAG-GGATGCATTGCACGTCAGACGCAGTCACCTCCCATTGAACTGATTTCTGAAGAACTTTTAAAAAGCACTTCGTGTGAATGATTTAGAAATGAGATGATCAGGAGTGATGGA-CCGATGGAGAAG-CAGAG-CTCAGGACAATGGGCTGCAGCAAAAAGATTGACCCTAATTCATCGGTTCAATTATTTCATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377480" ref_strand="+" ref_description="SGN-E377480 [TUS-20-H15](-)">
      <seq>aaggcaaattgcaagcatttaatcaggatattagtcaacaagtagctggttatatgagagatcctagcaaaatgataaagggaatgcagcaaagtagatcggcagttgccctatttggaactgttccagatgctactggcaatggagagggaacaaacatggatggtgatccggagcttttggatgactctgaattctatcagcaattgctgagggagttctttgaggctgtagatcccgcctcatttgagacagccttttatgcattgaagagactacaaacaaaaaaacgaaaaattgttgatcgtcgtgcttcaaaaagtcgtaaaatccggtccaatattcatgaaaagattgtcaattttatggctcctaatcagcccgtaaatcttccggaaatggccccccaattgtttgagaatttgttttcagggggctctacccataggccccttgcttaaggcccccagaaccgaaggttcctaaagttgttcccttaaatataaaatatgtaattcaaatagtttttactgcccagctctttttaattttttttcttgtcagtttgttgtttgggataaatgaaagtgatattatctttggactaaattttttttatagatgaaagttaaagcccccgtttttttttcctgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="35210" stop="32932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34910" g_stop="34885" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34884" i_stop="34807" i_length="78">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34806" g_stop="34711" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="122" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34710" i_stop="34601" i_length="110">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34600" g_stop="34574" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="149" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34573" i_stop="34310" i_length="264">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.866" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34309" g_stop="34210" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="249" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34209" i_stop="33722" i_length="488">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.719" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33721" g_stop="33637" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="334" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33636" i_stop="33559" i_length="78">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33558" g_stop="33238" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="655" r_length="321" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="657" polyA_stop="692"/>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E377480" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34910" e_stop="34885"/>
          <exon e_start="34806" e_stop="34711"/>
          <exon e_start="34600" e_stop="34574"/>
          <exon e_start="34309" e_stop="34210"/>
          <exon e_start="33721" e_stop="33637"/>
          <exon e_start="33558" e_stop="33238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCAAATTGCAAGCATTTAATCAGGTTTATTTCTGGGACTTGAAAGATGCTATGTACAGCAATGATCACAATGTCTTGAATTAATGTTGTGATATGGTACAGGATATTAGTCAACAAGTAGCTGGTTATATGAGAGATCCTAGCAAAATGATAAAGGGAATGCAGCAAAGTAGATCGGCAGTTGCACTATTTGGAACTGTAAGTCTAACTTTCTGAGTTGATTTGAGGACGGCTATGTTTCTTAATGTTTATGACAATTTTTTTTTCTGTTTTCCTTAGTTTTGATTTATGTGCCTGCTTTTATGCAGGTTCCAGATGCTACTGGCAATGGAGAGGTATCAATGTGTTATATGCATTTTGTCAGTTTTTGGCCCTGAATAGTGATTGCTGTTCAAGTCCAATTGATAAGAGTAGACCAGTAAATCTCCTTGTTGAATGTGTTGCTTAGACAAATATAGGCATGCGACTAGCTTTGTCAGGTTTATGCTGTGGAAAATGTCATTCTTCATGTACAAATGCATTAATTTTTGCTTGAGAATGCTCTTGCATGGATTCTTTAGGAAAAAAAAGCACGTCTCATTATCCTTAACTTGGATCAGGGAACAAACATGGATGGTGATCCGGAGCTTCTGGATGACTCTGAATTCTATCAGCAATTGCTGAGGGAGTTCTTTGAGGCTGTAGATCCCGCATCATCTGGTAAGTTGAACAATCCCCTCCACCCTCTGCAAAATAATCTGGTTATGTTTCAGAGGTACCGCCTTCCTCTATCTATGGTGATTTATGTTATTAGGGAAACGTGGTTATCCTCACCTTTGATGTGATACCTTCAACATCATGTTCAATGTTTTTCCGTCTTTCTCCTATGATTTGACCATCACATGTCAGCTATTGGTATCATTCGATGTGAAATGGTTTTTTTAGGTTACTATGTTGCTTGAAGAATGCTGCCTGCTTTCTTCACATGCATTCTGTATCTGTCATTTTCAGAAAGGTCCCTGCTTTTACTCGAATTTGCATGTATACAGCATGAAATAAGTTCATAAAGATTACAGCTACAGATGAGCATTCTCAGAAAATGTATTTATACGATATAGTTATTGTGTTTGGCTGAGAATGCATTTCTAGGCTTTTTTGCTTCCTGGAAAAAGAACACCTTCAACTAACCAATTGTGTATGAACTACAGAGACAGCATTCTATGCATTGAAGAGACTACAAACAAAGAAACGAAAAATTGTTGATCGTCGTGCTTCAAAGAGTCGTAAAATCCGGTAACTCATTATCGATTATGTTGTACAAGGTTGCATTTTGATTTCCTGGATTATAAAGTTCGATCTTTGTTCCTGTAGGTACAATATTCATGAAAAGATTGTCAATTTTATGGCTCCTAATCAGCCTGTAAATCTTCCGGAAATGGCCCCCAAATTGTTTGAGAATTTGTTCTCAGGTGGCTCTACCCATAGGCCACTTGCTTAAGGCCCCCAGAACCGAAGGTTCCTAGAGTTGTTCCATTAGATATAAAATATGTAATTCAAATAGTTTTTACTGCACAGCTCTTTTTAATTTTTTTTCTTGTCAGTTTGTTGTTTGGGATAGATGAAAGTGATATTATCTTTGGACTAAATTTTTTTTATAGATGAAAGTTAAAGCAGCAGTTTTTCTTTCATGTT</genome_strand>
        <mrna_strand>AAGGCAAATTGCAAGCATTTAATCAG..............................................................................GATATTAGTCAACAAGTAGCTGGTTATATGAGAGATCCTAGCAAAATGATAAAGGGAATGCAGCAAAGTAGATCGGCAGTTGCCCTATTTGGAACT..............................................................................................................GTTCCAGATGCTACTGGCAATGGAGAG........................................................................................................................................................................................................................................................................GGAACAAACATGGATGGTGATCCGGAGCTTTTGGATGACTCTGAATTCTATCAGCAATTGCTGAGGGAGTTCTTTGAGGCTGTAGATCCCGCCTCATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGCCTTTTATGCATTGAAGAGACTACAAACAAAAAAACGAAAAATTGTTGATCGTCGTGCTTCAAAAAGTCGTAAAATCCG..............................................................................GTCCAATATTCATGAAAAGATTGTCAATTTTATGGCTCCTAATCAGCCCGTAAATCTTCCGGAAATGGCCCCCCAATTGTTTGAGAATTTGTTTTCAGGGGGCTCTACCCATAGGCCCCTTGCTTAAGGCCCCCAGAACCGAAGGTTCCTAAAGTTGTTCCCTTAAATATAAAATATGTAATTCAAATAGTTTTTACTGCCCAGCTCTTTTTAATTTTTTTTCTTGTCAGTTTGTTGTTTGGGATAAATGAAAGTGATATTATCTTTGGACTAAATTTTTTTTATAGATGAAAGTTAAAGCCCCCGTTTTTTTTTCCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244122" ref_strand="+" ref_description="SGN-E244122 [cLEE-1-M7]">
      <seq>acccagatgctactggcaatggagagggaacaaacatggatggtgatccggagcttctggatgactctgaattctatcagcaattgctgagggagttctttgaggctgtagatcccgcatcatctgagacagcattctatgcattgaagagactacaaacaaagaaacgaaaaattgttgatcgtcgtgcttcaaagagtcgtaaaatccggtacaatattcatgaaaagattgtcaattttatggctcctaatcagcctgtaaatcttccggaaatggcccccaaattgtttgagaatttgttctcaggtggctctacccataggccacttgcttaaggcccccagaaccgaaggttcctagagttgttccattagatataaaatatgtaattcaaatagtttttactgcacagctctttttaattttttttcttgtcagtttgttgtttgggatagatgaaagtgatattatctttggactaaattttttttatagatgaaagttaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="34897" stop="32959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34599" g_stop="34574" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34573" i_stop="34310" i_length="264">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34309" g_stop="34210" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="126" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34209" i_stop="33722" i_length="488">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33721" g_stop="33637" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="211" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33636" i_stop="33559" i_length="78">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33558" g_stop="33259" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="511" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E244122" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34599" e_stop="34574"/>
          <exon e_start="34309" e_stop="34210"/>
          <exon e_start="33721" e_stop="33637"/>
          <exon e_start="33558" e_stop="33259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGATGCTACTGGCAATGGAGAGGTATCAATGTGTTATATGCATTTTGTCAGTTTTTGGCCCTGAATAGTGATTGCTGTTCAAGTCCAATTGATAAGAGTAGACCAGTAAATCTCCTTGTTGAATGTGTTGCTTAGACAAATATAGGCATGCGACTAGCTTTGTCAGGTTTATGCTGTGGAAAATGTCATTCTTCATGTACAAATGCATTAATTTTTGCTTGAGAATGCTCTTGCATGGATTCTTTAGGAAAAAAAAGCACGTCTCATTATCCTTAACTTGGATCAGGGAACAAACATGGATGGTGATCCGGAGCTTCTGGATGACTCTGAATTCTATCAGCAATTGCTGAGGGAGTTCTTTGAGGCTGTAGATCCCGCATCATCTGGTAAGTTGAACAATCCCCTCCACCCTCTGCAAAATAATCTGGTTATGTTTCAGAGGTACCGCCTTCCTCTATCTATGGTGATTTATGTTATTAGGGAAACGTGGTTATCCTCACCTTTGATGTGATACCTTCAACATCATGTTCAATGTTTTTCCGTCTTTCTCCTATGATTTGACCATCACATGTCAGCTATTGGTATCATTCGATGTGAAATGGTTTTTTTAGGTTACTATGTTGCTTGAAGAATGCTGCCTGCTTTCTTCACATGCATTCTGTATCTGTCATTTTCAGAAAGGTCCCTGCTTTTACTCGAATTTGCATGTATACAGCATGAAATAAGTTCATAAAGATTACAGCTACAGATGAGCATTCTCAGAAAATGTATTTATACGATATAGTTATTGTGTTTGGCTGAGAATGCATTTCTAGGCTTTTTTGCTTCCTGGAAAAAGAACACCTTCAACTAACCAATTGTGTATGAACTACAGAGACAGCATTCTATGCATTGAAGAGACTACAAACAAAGAAACGAAAAATTGTTGATCGTCGTGCTTCAAAGAGTCGTAAAATCCGGTAACTCATTATCGATTATGTTGTACAAGGTTGCATTTTGATTTCCTGGATTATAAAGTTCGATCTTTGTTCCTGTAGGTACAATATTCATGAAAAGATTGTCAATTTTATGGCTCCTAATCAGCCTGTAAATCTTCCGGAAATGGCCCCCAAATTGTTTGAGAATTTGTTCTCAGGTGGCTCTACCCATAGGCCACTTGCTTAAGGCCCCCAGAACCGAAGGTTCCTAGAGTTGTTCCATTAGATATAAAATATGTAATTCAAATAGTTTTTACTGCACAGCTCTTTTTAATTTTTTTTCTTGTCAGTTTGTTGTTTGGGATAGATGAAAGTGATATTATCTTTGGACTAAATTTTTTTTATAGATGAAAGTTAAAG</genome_strand>
        <mrna_strand>ACCCAGATGCTACTGGCAATGGAGAG........................................................................................................................................................................................................................................................................GGAACAAACATGGATGGTGATCCGGAGCTTCTGGATGACTCTGAATTCTATCAGCAATTGCTGAGGGAGTTCTTTGAGGCTGTAGATCCCGCATCATCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGCATTCTATGCATTGAAGAGACTACAAACAAAGAAACGAAAAATTGTTGATCGTCGTGCTTCAAAGAGTCGTAAAATCCG..............................................................................GTACAATATTCATGAAAAGATTGTCAATTTTATGGCTCCTAATCAGCCTGTAAATCTTCCGGAAATGGCCCCCAAATTGTTTGAGAATTTGTTCTCAGGTGGCTCTACCCATAGGCCACTTGCTTAAGGCCCCCAGAACCGAAGGTTCCTAGAGTTGTTCCATTAGATATAAAATATGTAATTCAAATAGTTTTTACTGCACAGCTCTTTTTAATTTTTTTTCTTGTCAGTTTGTTGTTTGGGATAGATGAAAGTGATATTATCTTTGGACTAAATTTTTTTTATAGATGAAAGTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244123" ref_strand="+" ref_description="SGN-E244123 [cLEE-1-M7](-)">
      <seq>aatggagagggaccaaacatggatggtgatccggagcttctggatgactctgaattctatcagcaattgctgagggagttctttgaggctgtagatcccgcatcatttgagacagcattttatgcattgaagagcctccaaccaaagaaacgaaaaattgttgatcgtcgggcttcaaaaagtcgtaaaatccggtccaatattcatgaaaagattgtcaattttagggctcctaaccagcctgtaaatcttccggaaatggcccccaaattgtttgagaatttgttctcaggtggctctacccataggccccttgcttaaggcccccaaaaccgaaggttcctaaagttgttcccttagatataaaatatgtaattcaaatagtttttacggcccagctctttttaattttttttcttgccagtttgttgtttgggataaatgaaagtgatattatctttggactaaattttttttatagatgaaagtttaagccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="34611" stop="32958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34582" g_stop="34574" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34573" i_stop="34310" i_length="264">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.866" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34309" g_stop="34210" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="109" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34209" i_stop="33722" i_length="488">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.719" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33721" g_stop="33637" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="194" r_length="85" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33636" i_stop="33559" i_length="78">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33558" g_stop="33260" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="493" r_length="299" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="497" polyA_stop="534"/>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E244123" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34582" e_stop="34574"/>
          <exon e_start="34309" e_stop="34210"/>
          <exon e_start="33721" e_stop="33637"/>
          <exon e_start="33558" e_stop="33260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAGAGGTATCAATGTGTTATATGCATTTTGTCAGTTTTTGGCCCTGAATAGTGATTGCTGTTCAAGTCCAATTGATAAGAGTAGACCAGTAAATCTCCTTGTTGAATGTGTTGCTTAGACAAATATAGGCATGCGACTAGCTTTGTCAGGTTTATGCTGTGGAAAATGTCATTCTTCATGTACAAATGCATTAATTTTTGCTTGAGAATGCTCTTGCATGGATTCTTTAGGAAAAAAAAGCACGTCTCATTATCCTTAACTTGGATCAGGGAACAAACATGGATGGTGATCCGGAGCTTCTGGATGACTCTGAATTCTATCAGCAATTGCTGAGGGAGTTCTTTGAGGCTGTAGATCCCGCATCATCTGGTAAGTTGAACAATCCCCTCCACCCTCTGCAAAATAATCTGGTTATGTTTCAGAGGTACCGCCTTCCTCTATCTATGGTGATTTATGTTATTAGGGAAACGTGGTTATCCTCACCTTTGATGTGATACCTTCAACATCATGTTCAATGTTTTTCCGTCTTTCTCCTATGATTTGACCATCACATGTCAGCTATTGGTATCATTCGATGTGAAATGGTTTTTTTAGGTTACTATGTTGCTTGAAGAATGCTGCCTGCTTTCTTCACATGCATTCTGTATCTGTCATTTTCAGAAAGGTCCCTGCTTTTACTCGAATTTGCATGTATACAGCATGAAATAAGTTCATAAAGATTACAGCTACAGATGAGCATTCTCAGAAAATGTATTTATACGATATAGTTATTGTGTTTGGCTGAGAATGCATTTCTAGGCTTTTTTGCTTCCTGGAAAAAGAACACCTTCAACTAACCAATTGTGTATGAACTACAGAGACAGCATTCTATGCATTGAAGAGACTACAAACAAAGAAACGAAAAATTGTTGATCGTCGTGCTTCAAAGAGTCGTAAAATCCGGTAACTCATTATCGATTATGTTGTACAAGGTTGCATTTTGATTTCCTGGATTATAAAGTTCGATCTTTGTTCCTGTAGGTACAATATTCATGAAAAGATTGTCAATTTTATGGCTCCTAATCAGCCTGTAAATCTTCCGGAAATGGCCCCCAAATTGTTTGAGAATTTGTTCTCAGGTGGCTCTACCCATAGGCCACTTGCTTAAGGCCCCCAGAACCGAAGGTTCCTAGAGTTGTTCCATTAGATATAAAATATGTAATTCAAATAGTTTTTACTGCACAGCTCTTTTTAATTTTTTTTCTTGTCAGTTTGTTGTTTGGGATAGATGAAAGTGATATTATCTTTGGACTAAATTTTTTTTATAGATGAAAGTTAAA</genome_strand>
        <mrna_strand>AATGGAGAG........................................................................................................................................................................................................................................................................GGACCAAACATGGATGGTGATCCGGAGCTTCTGGATGACTCTGAATTCTATCAGCAATTGCTGAGGGAGTTCTTTGAGGCTGTAGATCCCGCATCATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGCATTTTATGCATTGAAGAGCCTCCAACCAAAGAAACGAAAAATTGTTGATCGTCGGGCTTCAAAAAGTCGTAAAATCCG..............................................................................GTCCAATATTCATGAAAAGATTGTCAATTTTAGGGCTCCTAACCAGCCTGTAAATCTTCCGGAAATGGCCCCCAAATTGTTTGAGAATTTGTTCTCAGGTGGCTCTACCCATAGGCCCCTTGCTTAAGGCCCCCAAAACCGAAGGTTCCTAAAGTTGTTCCCTTAGATATAAAATATGTAATTCAAATAGTTTTTACGGCCCAGCTCTTTTTAATTTTTTTTCTTGCCAGTTTGTTGTTTGGGATAAATGAAAGTGATATTATCTTTGGACTAAATTTTTTTTATAGATGAAAGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377481" ref_strand="+" ref_description="SGN-E377481 [TUS-20-H15]">
      <seq>gaagatgcatatacagatctcattgcctcttccagaaaaaccttggattccatactggaattgcaagaggtactactggagaagaatccatcaattactaaatcaatggatgtcaattctggtaaaaggtcgaagcttttggaagattctgtaaagtcaggtgaagttgatgatgattggcagaagatttctcaaatgcattcaaggatggctgcttttagggataaatcgatagataaatggcagagaaagacccaggtgacctctggtgctgccgcgatcaaaggcaaattgcaagcatttaatcaggatattagtcaacaagtagctggttatatgagagatcctagcaaaatgataaagggaatgcagcaaagtagatcggcagttgcactatttggaactgttccagatgctactggcaatggagagggaacaaacatggatggtgatccggagcttctggatgactctgaattctatcagcaattgctgagggagttctttgaggctgtagatcccgcatcatctgagacagcattctatgcattgaagagactacaaacaaagaaacgaaaaattgttgatcgtcgtgcttcanagagtcgtanaatccggtacaatattcatgaaaagattgtcaattttatggctcctaatcagcctgtaaatcttccggaaatggcccccaaattgtttgagaatttgttctcaggtggctctacccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="38345" stop="33147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38045" g_stop="37977" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37976" i_stop="37551" i_length="426">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37550" g_stop="37508" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="112" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37507" i_stop="36903" i_length="605">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.498" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36902" g_stop="36809" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="206" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36808" i_stop="34988" i_length="1821">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34987" g_stop="34885" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="309" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34884" i_stop="34807" i_length="78">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34806" g_stop="34711" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="405" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34710" i_stop="34601" i_length="110">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34600" g_stop="34574" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="432" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34573" i_stop="34310" i_length="264">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34309" g_stop="34210" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="532" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="34209" i_stop="33722" i_length="488">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="33721" g_stop="33637" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="617" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="33636" i_stop="33559" i_length="78">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="33558" g_stop="33447" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="729" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E377481" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38045" e_stop="37977"/>
          <exon e_start="37550" e_stop="37508"/>
          <exon e_start="36902" e_stop="36809"/>
          <exon e_start="34987" e_stop="34885"/>
          <exon e_start="34806" e_stop="34711"/>
          <exon e_start="34600" e_stop="34574"/>
          <exon e_start="34309" e_stop="34210"/>
          <exon e_start="33721" e_stop="33637"/>
          <exon e_start="33558" e_stop="33447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGCATATACAGATCTCATTGCCTCTTCCAGAAAAACCTTGGATTCCATACTGGAATTGCAAGAGGTACAGTGAGAACAGTTACTTCATAGTCATTTTTCTTTTGGAGTAACAAAAGATTAGTATGCTTTTCTTTTGCTGGAAACCTGACCATTGCTCCTCCCTAGCGGTCCCATTATGTGATAGGTTGCCACTTTGATATCCCAATATATCCTAAACACGTCACTGATAACCATATTGCAAGCACCTCGATAAAACTATGATCCGTTAGCAATATTCTCTTGTCAAATGCTCTACAAACTTCAAAATTGTTGTCTTGTAATAAAATTTTTTAAACCTGGGTCGAACAAAGTCAACTGATTTATTGATTGTTGTGCATAGTGGATATATGTCTCGTGAAGTAGGATGAAGGGAGTGTTATCTTTTGTTCAGATTAATACAATCCAGCTTTGCCTTTAACCAATTATAAAAGCACATTTTGCCATTTGACAGGTACTACTGGAGAAGAATCCATCAATTACTAAATCAATGGATGGTATGACATATAGCTTTGATTTTGCAGAACTTGAAGAGCTGCCTCCATACTAAAACTTTGAGTGTTAAATGTTCTTTACTCTTGAGTAAATGTTCTTTGCTCTTGAGTTTTTTGAAAATCTGAAGTTCCTTCTTGAAATAATCTAATAATAGTAGTAGTAAAATATTGGTAAAATTAGGATGTAACAAGATGCTCTTTATTAAAATCTGATCCTCAACTCAAGGTATTGACTACTTGAGAGGACTTGCTTTAAAAAACCAAATAGATTAGGTTATACAGGGTCAGATATTTGCTAGATTTTCAAGACCTGCAAAAGAAACCGATTGCTTCTATGTTGCAGCTCTAAACAGTGATCTCTAAGTAAAAGTTCTATAATCCCCTGTTGTCTGTAATTAACTGAAAAAGAATTCCTGGAAATCCTTTCATATGCCACCTTATTTGGTATTGTTTCCAAACTGGAAAATCAAGTCCTGGACCTTTTGCACATCTTTCATATTTAAGCGCCTAATGACCATCAATTTTCCTCATAGCTCAAAGACAACATATGCATCTTTCGGAATTAACATATTCACTGGTTGTTGTTTCTGTAATTTTCTTTCTTGAAGTCAATTCTGGTAAAAGGTCGAAGCTTTTGGAAGATTCTGTAAAGTCAGGTGAAGTTGATGATGATTGGCAGAAGATTTCTCAAATGCATTCAAGGTAAGAATGTTTAACTGGGGCTTATTGTCACATCCCTTGTTTTATAGCTGTCTGTCAATTTTTTTTCATTGCTTTAGATCACGGTCTCAATTTGTTTGCTACAAGATATACATGTTTTATATGACAAATCAGGAGGAACTTCCAACATTAACAGTTAAAACTAGGAAGAAGAGTGTGATTTAGGTGGAAATTCAGCCAACACAGCCAGTAGATGTTTATCAGTGCTCCTCTTATCAACAAAGAAAAAGAAAATTACAGGTGCCACAATTTTGATGGCCTAGGAATTTAAGGGGATTGGCATGTATTATTCCTGGAAGCTAAGCCTGAACTCTTTTTAAGCAGAACATTAGTTATCTGGGCTGGGCTAGAACACCAGTATAGCCTAAGCTGGATCACATCATTGGCAGAATGTGAATCGACAATACCTGATTCTTTGTAACTGTTTTTTGTCAAATTTAAAACACGGGTATGATTTTGAACGTGAACCAAATTTTGGTATAATAGTTTATTTGAGCGAAATATTCGCATGCAAAGTGCATTTCTCTTTGTGTTTTACTCTAAATCTAAATGAGCAAGAGAGTGGTGCTGGAAGAGGCTAAGGCCTAAGTGGGAGAGGTAACAGAATTTGGTGGGCGCAATCTTCACTTTGTTCTACCTCGTATTCCTTGCACACTTTCAAGTTTCCATTGCCTATGAGCAAGAAAAACCAATTTCTTTTCATTTATCTTATTTATCTCTTCCCAGGACCTATGTGTCTACTCCATGGATGCCTTTGTCCATCTGTATGACATGTCTGAATGTGCAGTTCCCCAAGAGCAAGATAAGACTTGTGTCACAGTTAACTTAAAACTCCAAGAGAAATACAAGTTATCTTGTTCTTATTTATTTTCTACTATTCCCAAATATGTATGCTTTCACTCCATGTCTGTGCCTGTCTGTCTGACATGTCTTGTTCTAGAGAGCTGAGAGCAAAATATGAACATGCATATGTAAGTTCCTGTTTAACCTTATACTCACCTCAAGTCACATTTTATATGACAGTCTATGAAGAGTATAGGATATTAATTTGACTTGGCAATATATTAGTCATAGTGCAGAGCATATAAAGCAATGGTCAAGAAGTTAGCTGGCAGAAATAAATATCATACCACACTTTAAAACTTGGAATTTGGACTTCTTGAAGGTTCTGAAAGTCATGTAGAAATGAAATTGGTGTCAAATATTTTTGGTCCTCCCAAAATTGAAAGACTCGTACAAATTGGGGTAGAGCAAGTATAAGTTTTCATTTGAATTAATGAGGGCTAATTAAGATAGCAATTTGCTTTTACCATTTGATTGTTGAGCTAAACACAACTGGAAATCAAATGAAAAAGGAGGGGAAGAACCTTGATCGCAACATTATCAAGATTTTTAATCCATGTTGGCGCTGCTAATTTAATTGGCTAAACCGGAGGGTGTGGAAACTTGGGGCCACAAGTCCTCGAATGTTGTAGATTACCTTTTCGATTGCTTTTGTTCTAGCGATTATTTCTCATAATCTATTGCATTCTTCTAAGCAATAGGTTGGATCTTGCTTCCCCTGTGAAGAATTAGGTTCTGCATCCCATTATTAGTGTTGATCTGGAGTCAGATTTTATATACATCTTTGTTAGGAACAAAATCTGCATAACTACGAGCATTTTCTTAACTCCAAAAGTTAGGTTCGAGAGTAGCTAATACCCTGCCTTTTCTCAGCATTGCATTCTCATGTGATAAGTTTGTTTTTCCATTTCTCCCTTTGCTAAGTAGATTGGCCTGTTATTGGCAATTCTTGTGTCATAGGATGGCTGCTTTTAGGGATAAATCGATAGATAAATGGCAGAGAAAGACCCAGGTGACCTCTGGTGCTGCCGCGATCAAAGGCAAATTGCAAGCATTTAATCAGGTTTATTTCTGGGACTTGAAAGATGCTATGTACAGCAATGATCACAATGTCTTGAATTAATGTTGTGATATGGTACAGGATATTAGTCAACAAGTAGCTGGTTATATGAGAGATCCTAGCAAAATGATAAAGGGAATGCAGCAAAGTAGATCGGCAGTTGCACTATTTGGAACTGTAAGTCTAACTTTCTGAGTTGATTTGAGGACGGCTATGTTTCTTAATGTTTATGACAATTTTTTTTTCTGTTTTCCTTAGTTTTGATTTATGTGCCTGCTTTTATGCAGGTTCCAGATGCTACTGGCAATGGAGAGGTATCAATGTGTTATATGCATTTTGTCAGTTTTTGGCCCTGAATAGTGATTGCTGTTCAAGTCCAATTGATAAGAGTAGACCAGTAAATCTCCTTGTTGAATGTGTTGCTTAGACAAATATAGGCATGCGACTAGCTTTGTCAGGTTTATGCTGTGGAAAATGTCATTCTTCATGTACAAATGCATTAATTTTTGCTTGAGAATGCTCTTGCATGGATTCTTTAGGAAAAAAAAGCACGTCTCATTATCCTTAACTTGGATCAGGGAACAAACATGGATGGTGATCCGGAGCTTCTGGATGACTCTGAATTCTATCAGCAATTGCTGAGGGAGTTCTTTGAGGCTGTAGATCCCGCATCATCTGGTAAGTTGAACAATCCCCTCCACCCTCTGCAAAATAATCTGGTTATGTTTCAGAGGTACCGCCTTCCTCTATCTATGGTGATTTATGTTATTAGGGAAACGTGGTTATCCTCACCTTTGATGTGATACCTTCAACATCATGTTCAATGTTTTTCCGTCTTTCTCCTATGATTTGACCATCACATGTCAGCTATTGGTATCATTCGATGTGAAATGGTTTTTTTAGGTTACTATGTTGCTTGAAGAATGCTGCCTGCTTTCTTCACATGCATTCTGTATCTGTCATTTTCAGAAAGGTCCCTGCTTTTACTCGAATTTGCATGTATACAGCATGAAATAAGTTCATAAAGATTACAGCTACAGATGAGCATTCTCAGAAAATGTATTTATACGATATAGTTATTGTGTTTGGCTGAGAATGCATTTCTAGGCTTTTTTGCTTCCTGGAAAAAGAACACCTTCAACTAACCAATTGTGTATGAACTACAGAGACAGCATTCTATGCATTGAAGAGACTACAAACAAAGAAACGAAAAATTGTTGATCGTCGTGCTTCAAAGAGTCGTAAAATCCGGTAACTCATTATCGATTATGTTGTACAAGGTTGCATTTTGATTTCCTGGATTATAAAGTTCGATCTTTGTTCCTGTAGGTACAATATTCATGAAAAGATTGTCAATTTTATGGCTCCTAATCAGCCTGTAAATCTTCCGGAAATGGCCCCCAAATTGTTTGAGAATTTGTTCTCAGGTGGCTCTACCCAT</genome_strand>
        <mrna_strand>GAAGATGCATATACAGATCTCATTGCCTCTTCCAGAAAAACCTTGGATTCCATACTGGAATTGCAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTACTGGAGAAGAATCCATCAATTACTAAATCAATGGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATTCTGGTAAAAGGTCGAAGCTTTTGGAAGATTCTGTAAAGTCAGGTGAAGTTGATGATGATTGGCAGAAGATTTCTCAAATGCATTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCTGCTTTTAGGGATAAATCGATAGATAAATGGCAGAGAAAGACCCAGGTGACCTCTGGTGCTGCCGCGATCAAAGGCAAATTGCAAGCATTTAATCAG..............................................................................GATATTAGTCAACAAGTAGCTGGTTATATGAGAGATCCTAGCAAAATGATAAAGGGAATGCAGCAAAGTAGATCGGCAGTTGCACTATTTGGAACT..............................................................................................................GTTCCAGATGCTACTGGCAATGGAGAG........................................................................................................................................................................................................................................................................GGAACAAACATGGATGGTGATCCGGAGCTTCTGGATGACTCTGAATTCTATCAGCAATTGCTGAGGGAGTTCTTTGAGGCTGTAGATCCCGCATCATCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGCATTCTATGCATTGAAGAGACTACAAACAAAGAAACGAAAAATTGTTGATCGTCGTGCTTCANAGAGTCGTANAATCCG..............................................................................GTACAATATTCATGAAAAGATTGTCAATTTTATGGCTCCTAATCAGCCTGTAAATCTTCCGGAAATGGCCCCCAAATTGTTTGAGAATTTGTTCTCAGGTGGCTCTACCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233235" ref_strand="+" ref_description="SGN-E233235 [cLED-6-M5]">
      <seq>gaagatgcatatacagatctcattgcctcttccagaaaaaccttggattccatactggaattgcaagaggtactactggagaagaatccatcaattactaaatcaatggatgtcaattctggtaaaaggtcgaagcttttggaagattctgtaaagtcaggtgaagttgatgatgattggcagaagatttctcaaatgcattcaaggatggctgcttttagggataaatcgatagataaatggcagagaaagacccaggtgacctctggtgctgccgcgatcaaaggcaaattgcaagcatttaatcaggatattagtcaacaagtagctggttatatgagagatcctagcaaaatgataaagggaatgcagcaaagtagatcggcagttgcactatttggaactgttccagatgctactggcaatggagagggaacaaacatggatggtgatccggagcttctggatgactctgaattctatcagcaattgctgagggagttctttgaggctgtagatcccgcatcatctgagacagcattctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="38345" stop="33905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38045" g_stop="37977" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37976" i_stop="37551" i_length="426">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37550" g_stop="37508" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="112" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37507" i_stop="36903" i_length="605">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.498" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36902" g_stop="36809" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="206" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36808" i_stop="34988" i_length="1821">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34987" g_stop="34885" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="309" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34884" i_stop="34807" i_length="78">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34806" g_stop="34711" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="405" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34710" i_stop="34601" i_length="110">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34600" g_stop="34574" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="432" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34573" i_stop="34310" i_length="264">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34309" g_stop="34210" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="532" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E233235" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38045" e_stop="37977"/>
          <exon e_start="37550" e_stop="37508"/>
          <exon e_start="36902" e_stop="36809"/>
          <exon e_start="34987" e_stop="34885"/>
          <exon e_start="34806" e_stop="34711"/>
          <exon e_start="34600" e_stop="34574"/>
          <exon e_start="34309" e_stop="34210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGCATATACAGATCTCATTGCCTCTTCCAGAAAAACCTTGGATTCCATACTGGAATTGCAAGAGGTACAGTGAGAACAGTTACTTCATAGTCATTTTTCTTTTGGAGTAACAAAAGATTAGTATGCTTTTCTTTTGCTGGAAACCTGACCATTGCTCCTCCCTAGCGGTCCCATTATGTGATAGGTTGCCACTTTGATATCCCAATATATCCTAAACACGTCACTGATAACCATATTGCAAGCACCTCGATAAAACTATGATCCGTTAGCAATATTCTCTTGTCAAATGCTCTACAAACTTCAAAATTGTTGTCTTGTAATAAAATTTTTTAAACCTGGGTCGAACAAAGTCAACTGATTTATTGATTGTTGTGCATAGTGGATATATGTCTCGTGAAGTAGGATGAAGGGAGTGTTATCTTTTGTTCAGATTAATACAATCCAGCTTTGCCTTTAACCAATTATAAAAGCACATTTTGCCATTTGACAGGTACTACTGGAGAAGAATCCATCAATTACTAAATCAATGGATGGTATGACATATAGCTTTGATTTTGCAGAACTTGAAGAGCTGCCTCCATACTAAAACTTTGAGTGTTAAATGTTCTTTACTCTTGAGTAAATGTTCTTTGCTCTTGAGTTTTTTGAAAATCTGAAGTTCCTTCTTGAAATAATCTAATAATAGTAGTAGTAAAATATTGGTAAAATTAGGATGTAACAAGATGCTCTTTATTAAAATCTGATCCTCAACTCAAGGTATTGACTACTTGAGAGGACTTGCTTTAAAAAACCAAATAGATTAGGTTATACAGGGTCAGATATTTGCTAGATTTTCAAGACCTGCAAAAGAAACCGATTGCTTCTATGTTGCAGCTCTAAACAGTGATCTCTAAGTAAAAGTTCTATAATCCCCTGTTGTCTGTAATTAACTGAAAAAGAATTCCTGGAAATCCTTTCATATGCCACCTTATTTGGTATTGTTTCCAAACTGGAAAATCAAGTCCTGGACCTTTTGCACATCTTTCATATTTAAGCGCCTAATGACCATCAATTTTCCTCATAGCTCAAAGACAACATATGCATCTTTCGGAATTAACATATTCACTGGTTGTTGTTTCTGTAATTTTCTTTCTTGAAGTCAATTCTGGTAAAAGGTCGAAGCTTTTGGAAGATTCTGTAAAGTCAGGTGAAGTTGATGATGATTGGCAGAAGATTTCTCAAATGCATTCAAGGTAAGAATGTTTAACTGGGGCTTATTGTCACATCCCTTGTTTTATAGCTGTCTGTCAATTTTTTTTCATTGCTTTAGATCACGGTCTCAATTTGTTTGCTACAAGATATACATGTTTTATATGACAAATCAGGAGGAACTTCCAACATTAACAGTTAAAACTAGGAAGAAGAGTGTGATTTAGGTGGAAATTCAGCCAACACAGCCAGTAGATGTTTATCAGTGCTCCTCTTATCAACAAAGAAAAAGAAAATTACAGGTGCCACAATTTTGATGGCCTAGGAATTTAAGGGGATTGGCATGTATTATTCCTGGAAGCTAAGCCTGAACTCTTTTTAAGCAGAACATTAGTTATCTGGGCTGGGCTAGAACACCAGTATAGCCTAAGCTGGATCACATCATTGGCAGAATGTGAATCGACAATACCTGATTCTTTGTAACTGTTTTTTGTCAAATTTAAAACACGGGTATGATTTTGAACGTGAACCAAATTTTGGTATAATAGTTTATTTGAGCGAAATATTCGCATGCAAAGTGCATTTCTCTTTGTGTTTTACTCTAAATCTAAATGAGCAAGAGAGTGGTGCTGGAAGAGGCTAAGGCCTAAGTGGGAGAGGTAACAGAATTTGGTGGGCGCAATCTTCACTTTGTTCTACCTCGTATTCCTTGCACACTTTCAAGTTTCCATTGCCTATGAGCAAGAAAAACCAATTTCTTTTCATTTATCTTATTTATCTCTTCCCAGGACCTATGTGTCTACTCCATGGATGCCTTTGTCCATCTGTATGACATGTCTGAATGTGCAGTTCCCCAAGAGCAAGATAAGACTTGTGTCACAGTTAACTTAAAACTCCAAGAGAAATACAAGTTATCTTGTTCTTATTTATTTTCTACTATTCCCAAATATGTATGCTTTCACTCCATGTCTGTGCCTGTCTGTCTGACATGTCTTGTTCTAGAGAGCTGAGAGCAAAATATGAACATGCATATGTAAGTTCCTGTTTAACCTTATACTCACCTCAAGTCACATTTTATATGACAGTCTATGAAGAGTATAGGATATTAATTTGACTTGGCAATATATTAGTCATAGTGCAGAGCATATAAAGCAATGGTCAAGAAGTTAGCTGGCAGAAATAAATATCATACCACACTTTAAAACTTGGAATTTGGACTTCTTGAAGGTTCTGAAAGTCATGTAGAAATGAAATTGGTGTCAAATATTTTTGGTCCTCCCAAAATTGAAAGACTCGTACAAATTGGGGTAGAGCAAGTATAAGTTTTCATTTGAATTAATGAGGGCTAATTAAGATAGCAATTTGCTTTTACCATTTGATTGTTGAGCTAAACACAACTGGAAATCAAATGAAAAAGGAGGGGAAGAACCTTGATCGCAACATTATCAAGATTTTTAATCCATGTTGGCGCTGCTAATTTAATTGGCTAAACCGGAGGGTGTGGAAACTTGGGGCCACAAGTCCTCGAATGTTGTAGATTACCTTTTCGATTGCTTTTGTTCTAGCGATTATTTCTCATAATCTATTGCATTCTTCTAAGCAATAGGTTGGATCTTGCTTCCCCTGTGAAGAATTAGGTTCTGCATCCCATTATTAGTGTTGATCTGGAGTCAGATTTTATATACATCTTTGTTAGGAACAAAATCTGCATAACTACGAGCATTTTCTTAACTCCAAAAGTTAGGTTCGAGAGTAGCTAATACCCTGCCTTTTCTCAGCATTGCATTCTCATGTGATAAGTTTGTTTTTCCATTTCTCCCTTTGCTAAGTAGATTGGCCTGTTATTGGCAATTCTTGTGTCATAGGATGGCTGCTTTTAGGGATAAATCGATAGATAAATGGCAGAGAAAGACCCAGGTGACCTCTGGTGCTGCCGCGATCAAAGGCAAATTGCAAGCATTTAATCAGGTTTATTTCTGGGACTTGAAAGATGCTATGTACAGCAATGATCACAATGTCTTGAATTAATGTTGTGATATGGTACAGGATATTAGTCAACAAGTAGCTGGTTATATGAGAGATCCTAGCAAAATGATAAAGGGAATGCAGCAAAGTAGATCGGCAGTTGCACTATTTGGAACTGTAAGTCTAACTTTCTGAGTTGATTTGAGGACGGCTATGTTTCTTAATGTTTATGACAATTTTTTTTTCTGTTTTCCTTAGTTTTGATTTATGTGCCTGCTTTTATGCAGGTTCCAGATGCTACTGGCAATGGAGAGGTATCAATGTGTTATATGCATTTTGTCAGTTTTTGGCCCTGAATAGTGATTGCTGTTCAAGTCCAATTGATAAGAGTAGACCAGTAAATCTCCTTGTTGAATGTGTTGCTTAGACAAATATAGGCATGCGACTAGCTTTGTCAGGTTTATGCTGTGGAAAATGTCATTCTTCATGTACAAATGCATTAATTTTTGCTTGAGAATGCTCTTGCATGGATTCTTTAGGAAAAAAAAGCACGTCTCATTATCCTTAACTTGGATCAGGGAACAAACATGGATGGTGATCCGGAGCTTCTGGATGACTCTGAATTCTATCAGCAATTGCTGAGGGAGTTCTTTGAGGCTGTAGATCCCGCATCATCTG</genome_strand>
        <mrna_strand>GAAGATGCATATACAGATCTCATTGCCTCTTCCAGAAAAACCTTGGATTCCATACTGGAATTGCAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTACTGGAGAAGAATCCATCAATTACTAAATCAATGGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATTCTGGTAAAAGGTCGAAGCTTTTGGAAGATTCTGTAAAGTCAGGTGAAGTTGATGATGATTGGCAGAAGATTTCTCAAATGCATTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCTGCTTTTAGGGATAAATCGATAGATAAATGGCAGAGAAAGACCCAGGTGACCTCTGGTGCTGCCGCGATCAAAGGCAAATTGCAAGCATTTAATCAG..............................................................................GATATTAGTCAACAAGTAGCTGGTTATATGAGAGATCCTAGCAAAATGATAAAGGGAATGCAGCAAAGTAGATCGGCAGTTGCACTATTTGGAACT..............................................................................................................GTTCCAGATGCTACTGGCAATGGAGAG........................................................................................................................................................................................................................................................................GGAACAAACATGGATGGTGATCCGGAGCTTCTGGATGACTCTGAATTCTATCAGCAATTGCTGAGGGAGTTCTTTGAGGCTGTAGATCCCGCATCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578700" ref_strand="+" ref_description="SGN-E578700 [85820]">
      <seq>tgaaatattaaatgagatgtcggatgatgccgagaactttgatgacgatggtgatgaaaacaatgactatacagacaacgacgatgacgatgacgtcgatcattacagcaatgaagatgaaagtggagaacaagaggaaggagatcaagaagaagaagagagagaaaaactgactgaggaacacaaaattgctgaaatggaagaacttgagaaagaatatatggagcttaggcacaaggaacaagatcttttgaagaatctgacgcaacataaggatgaggatcttctcaaaggtcaagcagttaaaaaccagaaggctctctgggacaagacacttgagctaagattcttgctgcaaaagcctttctcgaacgccaatagacttccacaggaaccaattaggtcttccttttgtgattcagaggacacagttgaagatgcatattcggatctccttgcctcttccagaaaaaccttggattctatactggaattgcaagaggtactactggagaagaatccgtcaattactaaatcaatggatgtcaattctggtaaaaggtcgaagcttttggaagattctgtaaagtcaggtgaagttgatgatgattggcagaagatttctcaaatgcattcaaggatggctgcttttagggataaatcgatagataaatggcagagaaagacccaggtgacctctggtgctgccgggatcaaaggcaaattgcaagcatttaatcaggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="39936" stop="34582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39636" g_stop="39609" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39608" i_stop="39501" i_length="108">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39500" g_stop="39277" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="243" r_length="215" r_score="0.866"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39276" i_stop="38816" i_length="461">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38815" g_stop="38743" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="316" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38742" i_stop="38252" i_length="491">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38251" g_stop="38177" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="391" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38176" i_stop="38088" i_length="89">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38087" g_stop="37977" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="502" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37976" i_stop="37551" i_length="426">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37550" g_stop="37508" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="545" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37507" i_stop="36903" i_length="605">
            <donor d_prob="0.478" d_score="0.98"/>
            <acceptor a_prob="0.498" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36902" g_stop="36809" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="639" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="36808" i_stop="34988" i_length="1821">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34987" g_stop="34885" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="742" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E578700" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39636" e_stop="39609"/>
          <exon e_start="39500" e_stop="39277"/>
          <exon e_start="38815" e_stop="38743"/>
          <exon e_start="38251" e_stop="38177"/>
          <exon e_start="38087" e_stop="37977"/>
          <exon e_start="37550" e_stop="37508"/>
          <exon e_start="36902" e_stop="36809"/>
          <exon e_start="34987" e_stop="34885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATATTAAATGAGATGTCAGACGATGTTAGTTTTTCTCTCTTAAAATCCCTCATGGGTACTTATATGGTTCTATCCTTGATTTTTTTTGTTTCAAATATTTTACAAATGATAAATGTTCTGTGATTTGCTTAGGCCGAGAACTTTGATGACGACAGTGATGAAAACAATGACTATACAGACAATGACGATGACGTCGATCATTACAGCAATGAAGATGAAAGTGGAGAACAAGAGGAAGAGGAAGATGAGGAAGGAGATCAAGAAGAAGAAGAGCGAGAAAAACTGACTGAGGAACACAAAAATGCTGAAATGGAAGAACTTGAGAAAGAATATATGGAGCTTAGGCACAAGGAACAGTAAGTTTCTTTCTCTACAACATAGCTTAGTTTTATGGAATATTTCTAGTTGAACTTATCACCTAATAAGTACATATTTGCTCTTTAATCCCATTAGAGACACAAAGGCTTCTGAGCTGAAGAATGATTTATATCACAATTTATAAGATCACTTGTTTAATAGTGGATTCAATCCATCCAAGATACATCTAGCTAGTATTAAAAGAACTTCCATCACAATTTATCAAAGTTCTTCACAGTTGAATGCGTCTTTCGACTATTAAATAACTCGCATCATATTTTTATCAAGCTTCAGCCCAGTTTCCTTCTTCAGTTTGGTTCAAGTCTTGATGATCATATAGCAAGTCTAAAATATAAATAATATCAGCAGTAAAACAAGTAGGAAGTTCTCACTATTAAAGATATGGTACTCATGCCTACTATTGGTAGACATTTGACTTTGGCGGTTATTATGTGCACAGAGATCTTTTGAAGAATCTGACGCAACATAAGGATGAGGATCTTCTCAAAGGTCAAGCAGTTAAAAACCAGAAGGTATAGTGTACCAGATTGCACAGACGATAATGTTAGTTTTATCTTCTTACTATTGTTTTTTTTTGGTTGTATATGCACACGTCATGTTGCTTCAATTAAAAGAAATTCTGGTTACAGGGAACATAAATGGCTATCATGTGATTGGAAGTTTTATTCCCCTGTATGTTTTCCATTGATATCTATGTTGTATCTCCAATAGATACTATATGATTGAGTTGCATGTAAAATATACTTCTATTGCTTCTTGGCTTGCCAATGGCTGAAATTTTAGCTATAGTGCTAATATCATTTACTTGATTATTCTTTTCAAGTAATATGATGATTGACTAGTAATTCGATCTAGTGTGGTACATGATTAATGACTTGCCGATCTCCTACTTGAATTGTCCAAGCTTGTCTTACGTAATTGTCAAAATTATGTTATTGACTATCAAAATAAATAAATTGTGTTTTTAACTTTTTCCTTTTTTCTCTCTTTAAATTTCCCAAAGGCTCTCTGGGACAAGACACTTGAGCTAAGATTCTTGCTGCAAAAGGCTTTCTCGAACGCCAATAGACTTCCACAGGTTCATTGGGTTTACCATTTTGTTTCAACACCAGCACTAGATTCATGATATTGACTAATTGAACTTAAATGCATGTTGATCGCCTGCAGGAACCAATTAGGTCTTCCTTTTGTGATTCAGAGGACACAGTTGAAGATGCATATACAGATCTCATTGCCTCTTCCAGAAAAACCTTGGATTCCATACTGGAATTGCAAGAGGTACAGTGAGAACAGTTACTTCATAGTCATTTTTCTTTTGGAGTAACAAAAGATTAGTATGCTTTTCTTTTGCTGGAAACCTGACCATTGCTCCTCCCTAGCGGTCCCATTATGTGATAGGTTGCCACTTTGATATCCCAATATATCCTAAACACGTCACTGATAACCATATTGCAAGCACCTCGATAAAACTATGATCCGTTAGCAATATTCTCTTGTCAAATGCTCTACAAACTTCAAAATTGTTGTCTTGTAATAAAATTTTTTAAACCTGGGTCGAACAAAGTCAACTGATTTATTGATTGTTGTGCATAGTGGATATATGTCTCGTGAAGTAGGATGAAGGGAGTGTTATCTTTTGTTCAGATTAATACAATCCAGCTTTGCCTTTAACCAATTATAAAAGCACATTTTGCCATTTGACAGGTACTACTGGAGAAGAATCCATCAATTACTAAATCAATGGATGGTATGACATATAGCTTTGATTTTGCAGAACTTGAAGAGCTGCCTCCATACTAAAACTTTGAGTGTTAAATGTTCTTTACTCTTGAGTAAATGTTCTTTGCTCTTGAGTTTTTTGAAAATCTGAAGTTCCTTCTTGAAATAATCTAATAATAGTAGTAGTAAAATATTGGTAAAATTAGGATGTAACAAGATGCTCTTTATTAAAATCTGATCCTCAACTCAAGGTATTGACTACTTGAGAGGACTTGCTTTAAAAAACCAAATAGATTAGGTTATACAGGGTCAGATATTTGCTAGATTTTCAAGACCTGCAAAAGAAACCGATTGCTTCTATGTTGCAGCTCTAAACAGTGATCTCTAAGTAAAAGTTCTATAATCCCCTGTTGTCTGTAATTAACTGAAAAAGAATTCCTGGAAATCCTTTCATATGCCACCTTATTTGGTATTGTTTCCAAACTGGAAAATCAAGTCCTGGACCTTTTGCACATCTTTCATATTTAAGCGCCTAATGACCATCAATTTTCCTCATAGCTCAAAGACAACATATGCATCTTTCGGAATTAACATATTCACTGGTTGTTGTTTCTGTAATTTTCTTTCTTGAAGTCAATTCTGGTAAAAGGTCGAAGCTTTTGGAAGATTCTGTAAAGTCAGGTGAAGTTGATGATGATTGGCAGAAGATTTCTCAAATGCATTCAAGGTAAGAATGTTTAACTGGGGCTTATTGTCACATCCCTTGTTTTATAGCTGTCTGTCAATTTTTTTTCATTGCTTTAGATCACGGTCTCAATTTGTTTGCTACAAGATATACATGTTTTATATGACAAATCAGGAGGAACTTCCAACATTAACAGTTAAAACTAGGAAGAAGAGTGTGATTTAGGTGGAAATTCAGCCAACACAGCCAGTAGATGTTTATCAGTGCTCCTCTTATCAACAAAGAAAAAGAAAATTACAGGTGCCACAATTTTGATGGCCTAGGAATTTAAGGGGATTGGCATGTATTATTCCTGGAAGCTAAGCCTGAACTCTTTTTAAGCAGAACATTAGTTATCTGGGCTGGGCTAGAACACCAGTATAGCCTAAGCTGGATCACATCATTGGCAGAATGTGAATCGACAATACCTGATTCTTTGTAACTGTTTTTTGTCAAATTTAAAACACGGGTATGATTTTGAACGTGAACCAAATTTTGGTATAATAGTTTATTTGAGCGAAATATTCGCATGCAAAGTGCATTTCTCTTTGTGTTTTACTCTAAATCTAAATGAGCAAGAGAGTGGTGCTGGAAGAGGCTAAGGCCTAAGTGGGAGAGGTAACAGAATTTGGTGGGCGCAATCTTCACTTTGTTCTACCTCGTATTCCTTGCACACTTTCAAGTTTCCATTGCCTATGAGCAAGAAAAACCAATTTCTTTTCATTTATCTTATTTATCTCTTCCCAGGACCTATGTGTCTACTCCATGGATGCCTTTGTCCATCTGTATGACATGTCTGAATGTGCAGTTCCCCAAGAGCAAGATAAGACTTGTGTCACAGTTAACTTAAAACTCCAAGAGAAATACAAGTTATCTTGTTCTTATTTATTTTCTACTATTCCCAAATATGTATGCTTTCACTCCATGTCTGTGCCTGTCTGTCTGACATGTCTTGTTCTAGAGAGCTGAGAGCAAAATATGAACATGCATATGTAAGTTCCTGTTTAACCTTATACTCACCTCAAGTCACATTTTATATGACAGTCTATGAAGAGTATAGGATATTAATTTGACTTGGCAATATATTAGTCATAGTGCAGAGCATATAAAGCAATGGTCAAGAAGTTAGCTGGCAGAAATAAATATCATACCACACTTTAAAACTTGGAATTTGGACTTCTTGAAGGTTCTGAAAGTCATGTAGAAATGAAATTGGTGTCAAATATTTTTGGTCCTCCCAAAATTGAAAGACTCGTACAAATTGGGGTAGAGCAAGTATAAGTTTTCATTTGAATTAATGAGGGCTAATTAAGATAGCAATTTGCTTTTACCATTTGATTGTTGAGCTAAACACAACTGGAAATCAAATGAAAAAGGAGGGGAAGAACCTTGATCGCAACATTATCAAGATTTTTAATCCATGTTGGCGCTGCTAATTTAATTGGCTAAACCGGAGGGTGTGGAAACTTGGGGCCACAAGTCCTCGAATGTTGTAGATTACCTTTTCGATTGCTTTTGTTCTAGCGATTATTTCTCATAATCTATTGCATTCTTCTAAGCAATAGGTTGGATCTTGCTTCCCCTGTGAAGAATTAGGTTCTGCATCCCATTATTAGTGTTGATCTGGAGTCAGATTTTATATACATCTTTGTTAGGAACAAAATCTGCATAACTACGAGCATTTTCTTAACTCCAAAAGTTAGGTTCGAGAGTAGCTAATACCCTGCCTTTTCTCAGCATTGCATTCTCATGTGATAAGTTTGTTTTTCCATTTCTCCCTTTGCTAAGTAGATTGGCCTGTTATTGGCAATTCTTGTGTCATAGGATGGCTGCTTTTAGGGATAAATCGATAGATAAATGGCAGAGAAAGACCCAGGTGACCTCTGGTGCTGCCGCGATCAAAGGCAAATTGCAAGCATTTAATCAG</genome_strand>
        <mrna_strand>TGAAATATTAAATGAGATGTCGGATGAT............................................................................................................GCCGAGAACTTTGATGACGATGGTGATGAAAACAATGACTATACAGACAACGACGATGACGATGA-C-GTCGATC-AT-TACA-GCAA-TGAAGATGAA-A-GTGGAG-AACAAGAGGAAGGAGATCAAGAAGAAGAAGAGAGAGAAAAACTGACTGAGGAACACAAAATTGCTGAAATGGAAGAACTTGAGAAAGAATATATGGAGCTTAGGCACAAGGAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTTTTGAAGAATCTGACGCAACATAAGGATGAGGATCTTCTCAAAGGTCAAGCAGTTAAAAACCAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTCTGGGACAAGACACTTGAGCTAAGATTCTTGCTGCAAAAGCCTTTCTCGAACGCCAATAGACTTCCACAG.........................................................................................GAACCAATTAGGTCTTCCTTTTGTGATTCAGAGGACACAGTTGAAGATGCATATTCGGATCTCCTTGCCTCTTCCAGAAAAACCTTGGATTCTATACTGGAATTGCAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTACTGGAGAAGAATCCGTCAATTACTAAATCAATGGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATTCTGGTAAAAGGTCGAAGCTTTTGGAAGATTCTGTAAAGTCAGGTGAAGTTGATGATGATTGGCAGAAGATTTCTCAAATGCATTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCTGCTTTTAGGGATAAATCGATAGATAAATGGCAGAGAAAGACCCAGGTGACCTCTGGTGCTGCCGGGATCAAAGGCAAATTGCAAGCATTTAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700214" ref_strand="+" ref_description="SGN-E700214 [FA12CA02]">
      <seq>ctgagtttcatattcatctgatttaggaggcaggaaaatgggcacgtcttcgaagaaatcgaggaaagtagaggagagtgaaagcaactctgaatttgagaatgatgaaatattaaatgagatgtcagacgatgccgagaactttgatgacgacagtgatgaaaacaatgactatacagacaatgacgatgacgtcgatcattacagcaatgaagatgaaagtggagaacaagaggaagaggaagatgaggaaggagatcaagaagaagaagagcgagaaaaactgactgaggaacacaaaaatgctgaaatggaagaacttgagaaagaatatatggagcttaggcacaaggaacaagatcttttgaagaatctgacgcaacataaggatgaggatcttctcaaaggtcaagcagttaaaaaccagaaggctctctgggacaagacacttgagctaagattcttgctgcaaaaggctttctcgaacgccaatagacttccacaggaaccaattaggtcttccttttgtgattcagaggacacagttgaagatgcatatacagatctcattgcctcttccagaaaaaccttggattccatactggaattgcaagaggtactactggagaagaatccatcaattactaaatcaatggatgtcaattctggtaaaaggtcgaagcttttggaagattctgtaaagtcaggtgaagttgatgatgattggcagaagatttctcaaatgcattcaaggatggctgcttttagggataaatcgatagataaatggcagagaaagacccaggtgacctctgggtgctgcccgcgatcaaaggcaaattgccagcatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="40708" stop="34589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40408" g_stop="40389" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40388" i_stop="39722" i_length="667">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39721" g_stop="39609" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="133" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39608" i_stop="39501" i_length="108">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39500" g_stop="39277" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="357" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39276" i_stop="38816" i_length="461">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38815" g_stop="38743" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="430" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38742" i_stop="38252" i_length="491">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38251" g_stop="38177" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="505" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38176" i_stop="38088" i_length="89">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38087" g_stop="37977" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="616" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37976" i_stop="37551" i_length="426">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37550" g_stop="37508" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="659" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37507" i_stop="36903" i_length="605">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.498" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36902" g_stop="36809" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="753" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="36808" i_stop="34988" i_length="1821">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="34987" g_stop="34889" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="854" r_length="101" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E700214" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40408" e_stop="40389"/>
          <exon e_start="39721" e_stop="39609"/>
          <exon e_start="39500" e_stop="39277"/>
          <exon e_start="38815" e_stop="38743"/>
          <exon e_start="38251" e_stop="38177"/>
          <exon e_start="38087" e_stop="37977"/>
          <exon e_start="37550" e_stop="37508"/>
          <exon e_start="36902" e_stop="36809"/>
          <exon e_start="34987" e_stop="34889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGTTTCATATTCATCTGGTAATAATTTCTACTTCTCTTTAACTGCTTAAATAAAACCCTAGTTGGTTCTTCTCCATTCAATTTAAGCTTAAACGTTATAACTTGTTGATTTAAAGCTGGAAAAGAAGAAGCTTTAACTGCAACACATGTATTTATACATATATTTTTGCTTTTCTAGTTTAATTCTGATGCTTACTATTTGTTTTCTTGTGGTTATGGCTCAGAAATCAAGAAACTAGTAATTAGCTTCAGATATCATGTTTTTTTGGTTCCTAAGGACCCCAACTATTGTATTGTAGACAATGTGTTCGATAATATGTCTAAAGGAGTAAACTTTGCTCTATCAAGATTGTGAATTGATAGAGATAGTATCATACTTCATAAGGTGAACACCCAAGGAATAAGATTTTTTGGGGGCGTAAAGGTGGACACCATAAGGGTAAAAGAAGTGTGCATTGAGCCATGTCATGACATACTGCACAAGGAGAGTACTTCACATATTGAAGTGCTATCCCTGTGAAAATGAAACGCCTATTGCCATCTTGAGGACTTTAGAGTGTGTCTCGTGATTTCCAGCTCTACCTTTTACATATTAGTTTTCAAAAAATTAGGCTTTGTGTTTTTGTCTTGTCGCGAGTGTAATTACCCGATTGATAAATGATGAATTCTTTTTTTGTTTCTTCAGATTTAGGAGGCAGGAAAATGGGCACGTCTTCGAAGAAATCGAGGAAAGTAGAGGAGAGTGAAAGCAACTCTGAATTTGAGAATGATGAAATATTAAATGAGATGTCAGACGATGTTAGTTTTTCTCTCTTAAAATCCCTCATGGGTACTTATATGGTTCTATCCTTGATTTTTTTTGTTTCAAATATTTTACAAATGATAAATGTTCTGTGATTTGCTTAGGCCGAGAACTTTGATGACGACAGTGATGAAAACAATGACTATACAGACAATGACGATGACGTCGATCATTACAGCAATGAAGATGAAAGTGGAGAACAAGAGGAAGAGGAAGATGAGGAAGGAGATCAAGAAGAAGAAGAGCGAGAAAAACTGACTGAGGAACACAAAAATGCTGAAATGGAAGAACTTGAGAAAGAATATATGGAGCTTAGGCACAAGGAACAGTAAGTTTCTTTCTCTACAACATAGCTTAGTTTTATGGAATATTTCTAGTTGAACTTATCACCTAATAAGTACATATTTGCTCTTTAATCCCATTAGAGACACAAAGGCTTCTGAGCTGAAGAATGATTTATATCACAATTTATAAGATCACTTGTTTAATAGTGGATTCAATCCATCCAAGATACATCTAGCTAGTATTAAAAGAACTTCCATCACAATTTATCAAAGTTCTTCACAGTTGAATGCGTCTTTCGACTATTAAATAACTCGCATCATATTTTTATCAAGCTTCAGCCCAGTTTCCTTCTTCAGTTTGGTTCAAGTCTTGATGATCATATAGCAAGTCTAAAATATAAATAATATCAGCAGTAAAACAAGTAGGAAGTTCTCACTATTAAAGATATGGTACTCATGCCTACTATTGGTAGACATTTGACTTTGGCGGTTATTATGTGCACAGAGATCTTTTGAAGAATCTGACGCAACATAAGGATGAGGATCTTCTCAAAGGTCAAGCAGTTAAAAACCAGAAGGTATAGTGTACCAGATTGCACAGACGATAATGTTAGTTTTATCTTCTTACTATTGTTTTTTTTTGGTTGTATATGCACACGTCATGTTGCTTCAATTAAAAGAAATTCTGGTTACAGGGAACATAAATGGCTATCATGTGATTGGAAGTTTTATTCCCCTGTATGTTTTCCATTGATATCTATGTTGTATCTCCAATAGATACTATATGATTGAGTTGCATGTAAAATATACTTCTATTGCTTCTTGGCTTGCCAATGGCTGAAATTTTAGCTATAGTGCTAATATCATTTACTTGATTATTCTTTTCAAGTAATATGATGATTGACTAGTAATTCGATCTAGTGTGGTACATGATTAATGACTTGCCGATCTCCTACTTGAATTGTCCAAGCTTGTCTTACGTAATTGTCAAAATTATGTTATTGACTATCAAAATAAATAAATTGTGTTTTTAACTTTTTCCTTTTTTCTCTCTTTAAATTTCCCAAAGGCTCTCTGGGACAAGACACTTGAGCTAAGATTCTTGCTGCAAAAGGCTTTCTCGAACGCCAATAGACTTCCACAGGTTCATTGGGTTTACCATTTTGTTTCAACACCAGCACTAGATTCATGATATTGACTAATTGAACTTAAATGCATGTTGATCGCCTGCAGGAACCAATTAGGTCTTCCTTTTGTGATTCAGAGGACACAGTTGAAGATGCATATACAGATCTCATTGCCTCTTCCAGAAAAACCTTGGATTCCATACTGGAATTGCAAGAGGTACAGTGAGAACAGTTACTTCATAGTCATTTTTCTTTTGGAGTAACAAAAGATTAGTATGCTTTTCTTTTGCTGGAAACCTGACCATTGCTCCTCCCTAGCGGTCCCATTATGTGATAGGTTGCCACTTTGATATCCCAATATATCCTAAACACGTCACTGATAACCATATTGCAAGCACCTCGATAAAACTATGATCCGTTAGCAATATTCTCTTGTCAAATGCTCTACAAACTTCAAAATTGTTGTCTTGTAATAAAATTTTTTAAACCTGGGTCGAACAAAGTCAACTGATTTATTGATTGTTGTGCATAGTGGATATATGTCTCGTGAAGTAGGATGAAGGGAGTGTTATCTTTTGTTCAGATTAATACAATCCAGCTTTGCCTTTAACCAATTATAAAAGCACATTTTGCCATTTGACAGGTACTACTGGAGAAGAATCCATCAATTACTAAATCAATGGATGGTATGACATATAGCTTTGATTTTGCAGAACTTGAAGAGCTGCCTCCATACTAAAACTTTGAGTGTTAAATGTTCTTTACTCTTGAGTAAATGTTCTTTGCTCTTGAGTTTTTTGAAAATCTGAAGTTCCTTCTTGAAATAATCTAATAATAGTAGTAGTAAAATATTGGTAAAATTAGGATGTAACAAGATGCTCTTTATTAAAATCTGATCCTCAACTCAAGGTATTGACTACTTGAGAGGACTTGCTTTAAAAAACCAAATAGATTAGGTTATACAGGGTCAGATATTTGCTAGATTTTCAAGACCTGCAAAAGAAACCGATTGCTTCTATGTTGCAGCTCTAAACAGTGATCTCTAAGTAAAAGTTCTATAATCCCCTGTTGTCTGTAATTAACTGAAAAAGAATTCCTGGAAATCCTTTCATATGCCACCTTATTTGGTATTGTTTCCAAACTGGAAAATCAAGTCCTGGACCTTTTGCACATCTTTCATATTTAAGCGCCTAATGACCATCAATTTTCCTCATAGCTCAAAGACAACATATGCATCTTTCGGAATTAACATATTCACTGGTTGTTGTTTCTGTAATTTTCTTTCTTGAAGTCAATTCTGGTAAAAGGTCGAAGCTTTTGGAAGATTCTGTAAAGTCAGGTGAAGTTGATGATGATTGGCAGAAGATTTCTCAAATGCATTCAAGGTAAGAATGTTTAACTGGGGCTTATTGTCACATCCCTTGTTTTATAGCTGTCTGTCAATTTTTTTTCATTGCTTTAGATCACGGTCTCAATTTGTTTGCTACAAGATATACATGTTTTATATGACAAATCAGGAGGAACTTCCAACATTAACAGTTAAAACTAGGAAGAAGAGTGTGATTTAGGTGGAAATTCAGCCAACACAGCCAGTAGATGTTTATCAGTGCTCCTCTTATCAACAAAGAAAAAGAAAATTACAGGTGCCACAATTTTGATGGCCTAGGAATTTAAGGGGATTGGCATGTATTATTCCTGGAAGCTAAGCCTGAACTCTTTTTAAGCAGAACATTAGTTATCTGGGCTGGGCTAGAACACCAGTATAGCCTAAGCTGGATCACATCATTGGCAGAATGTGAATCGACAATACCTGATTCTTTGTAACTGTTTTTTGTCAAATTTAAAACACGGGTATGATTTTGAACGTGAACCAAATTTTGGTATAATAGTTTATTTGAGCGAAATATTCGCATGCAAAGTGCATTTCTCTTTGTGTTTTACTCTAAATCTAAATGAGCAAGAGAGTGGTGCTGGAAGAGGCTAAGGCCTAAGTGGGAGAGGTAACAGAATTTGGTGGGCGCAATCTTCACTTTGTTCTACCTCGTATTCCTTGCACACTTTCAAGTTTCCATTGCCTATGAGCAAGAAAAACCAATTTCTTTTCATTTATCTTATTTATCTCTTCCCAGGACCTATGTGTCTACTCCATGGATGCCTTTGTCCATCTGTATGACATGTCTGAATGTGCAGTTCCCCAAGAGCAAGATAAGACTTGTGTCACAGTTAACTTAAAACTCCAAGAGAAATACAAGTTATCTTGTTCTTATTTATTTTCTACTATTCCCAAATATGTATGCTTTCACTCCATGTCTGTGCCTGTCTGTCTGACATGTCTTGTTCTAGAGAGCTGAGAGCAAAATATGAACATGCATATGTAAGTTCCTGTTTAACCTTATACTCACCTCAAGTCACATTTTATATGACAGTCTATGAAGAGTATAGGATATTAATTTGACTTGGCAATATATTAGTCATAGTGCAGAGCATATAAAGCAATGGTCAAGAAGTTAGCTGGCAGAAATAAATATCATACCACACTTTAAAACTTGGAATTTGGACTTCTTGAAGGTTCTGAAAGTCATGTAGAAATGAAATTGGTGTCAAATATTTTTGGTCCTCCCAAAATTGAAAGACTCGTACAAATTGGGGTAGAGCAAGTATAAGTTTTCATTTGAATTAATGAGGGCTAATTAAGATAGCAATTTGCTTTTACCATTTGATTGTTGAGCTAAACACAACTGGAAATCAAATGAAAAAGGAGGGGAAGAACCTTGATCGCAACATTATCAAGATTTTTAATCCATGTTGGCGCTGCTAATTTAATTGGCTAAACCGGAGGGTGTGGAAACTTGGGGCCACAAGTCCTCGAATGTTGTAGATTACCTTTTCGATTGCTTTTGTTCTAGCGATTATTTCTCATAATCTATTGCATTCTTCTAAGCAATAGGTTGGATCTTGCTTCCCCTGTGAAGAATTAGGTTCTGCATCCCATTATTAGTGTTGATCTGGAGTCAGATTTTATATACATCTTTGTTAGGAACAAAATCTGCATAACTACGAGCATTTTCTTAACTCCAAAAGTTAGGTTCGAGAGTAGCTAATACCCTGCCTTTTCTCAGCATTGCATTCTCATGTGATAAGTTTGTTTTTCCATTTCTCCCTTTGCTAAGTAGATTGGCCTGTTATTGGCAATTCTTGTGTCATAGGATGGCTGCTTTTAGGGATAAATCGATAGATAAATGGCAGAGAAAGACCCAGGTGACCTCT-GGTGCTG-CCGCGATCAAAGGCAAATTGCAAGCATTTAA</genome_strand>
        <mrna_strand>CTGAGTTTCATATTCATCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAGGAGGCAGGAAAATGGGCACGTCTTCGAAGAAATCGAGGAAAGTAGAGGAGAGTGAAAGCAACTCTGAATTTGAGAATGATGAAATATTAAATGAGATGTCAGACGAT............................................................................................................GCCGAGAACTTTGATGACGACAGTGATGAAAACAATGACTATACAGACAATGACGATGACGTCGATCATTACAGCAATGAAGATGAAAGTGGAGAACAAGAGGAAGAGGAAGATGAGGAAGGAGATCAAGAAGAAGAAGAGCGAGAAAAACTGACTGAGGAACACAAAAATGCTGAAATGGAAGAACTTGAGAAAGAATATATGGAGCTTAGGCACAAGGAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTTTTGAAGAATCTGACGCAACATAAGGATGAGGATCTTCTCAAAGGTCAAGCAGTTAAAAACCAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTCTGGGACAAGACACTTGAGCTAAGATTCTTGCTGCAAAAGGCTTTCTCGAACGCCAATAGACTTCCACAG.........................................................................................GAACCAATTAGGTCTTCCTTTTGTGATTCAGAGGACACAGTTGAAGATGCATATACAGATCTCATTGCCTCTTCCAGAAAAACCTTGGATTCCATACTGGAATTGCAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTACTGGAGAAGAATCCATCAATTACTAAATCAATGGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATTCTGGTAAAAGGTCGAAGCTTTTGGAAGATTCTGTAAAGTCAGGTGAAGTTGATGATGATTGGCAGAAGATTTCTCAAATGCATTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCTGCTTTTAGGGATAAATCGATAGATAAATGGCAGAGAAAGACCCAGGTGACCTCTGGGTGCTGCCCGCGATCAAAGGCAAATTGCCAGCATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262834" ref_strand="+" ref_description="SGN-E262834 [cLEG-59-I7]">
      <seq>aaaatgggcacgtcttcgaagaaatcgaggaaagtagaggagagtgaaagcaactctgaatttgagaatgatgaaatattaaatgagatgtcagacgatgccgagaactttgatgacgacagtgatgaaaacaatgactatacagacaatgacgatgacgtcgatcattacagcaatgaagatgaaagtggagaacaagaggaagaggaagatgaggaaggagatcaagaagaagaagagcgagaaaaactgactgaggaacacaaaaatgctgaaatggaagaacttgagaaagaatatatggagcttaggcacaaggaacaagatcttttgaagaatctgacgcaacataaggatgaggatcttctcaaaggtcaagcagttaaaaaccagaaggctctctgggacaagacacttgagctaagattcttgctgcaaaaggctttctcgaacgccaatagacttccacaggaaccaattaggtcttccttttgtgattcagaggacacagttgaagatgcatatacagatctcattgcctcttccagaaaaaccttggattccatactggaattgcaagaggtactactggagaagaatccatcaattactaaatcaatggatgtcaattctggtaaaaggtcgaagcttttggaagattctgtaaagtcaggtgaagttgatgatgattggcagaagatttctcaaatgcattcaaggatggctgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="40007" stop="36497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39707" g_stop="39609" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39608" i_stop="39501" i_length="108">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39500" g_stop="39277" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="323" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39276" i_stop="38816" i_length="461">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38815" g_stop="38743" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="396" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38742" i_stop="38252" i_length="491">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38251" g_stop="38177" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="471" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38176" i_stop="38088" i_length="89">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38087" g_stop="37977" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="582" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37976" i_stop="37551" i_length="426">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37550" g_stop="37508" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="625" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37507" i_stop="36903" i_length="605">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.498" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36902" g_stop="36809" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="719" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E262834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39707" e_stop="39609"/>
          <exon e_start="39500" e_stop="39277"/>
          <exon e_start="38815" e_stop="38743"/>
          <exon e_start="38251" e_stop="38177"/>
          <exon e_start="38087" e_stop="37977"/>
          <exon e_start="37550" e_stop="37508"/>
          <exon e_start="36902" e_stop="36809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGGCACGTCTTCGAAGAAATCGAGGAAAGTAGAGGAGAGTGAAAGCAACTCTGAATTTGAGAATGATGAAATATTAAATGAGATGTCAGACGATGTTAGTTTTTCTCTCTTAAAATCCCTCATGGGTACTTATATGGTTCTATCCTTGATTTTTTTTGTTTCAAATATTTTACAAATGATAAATGTTCTGTGATTTGCTTAGGCCGAGAACTTTGATGACGACAGTGATGAAAACAATGACTATACAGACAATGACGATGACGTCGATCATTACAGCAATGAAGATGAAAGTGGAGAACAAGAGGAAGAGGAAGATGAGGAAGGAGATCAAGAAGAAGAAGAGCGAGAAAAACTGACTGAGGAACACAAAAATGCTGAAATGGAAGAACTTGAGAAAGAATATATGGAGCTTAGGCACAAGGAACAGTAAGTTTCTTTCTCTACAACATAGCTTAGTTTTATGGAATATTTCTAGTTGAACTTATCACCTAATAAGTACATATTTGCTCTTTAATCCCATTAGAGACACAAAGGCTTCTGAGCTGAAGAATGATTTATATCACAATTTATAAGATCACTTGTTTAATAGTGGATTCAATCCATCCAAGATACATCTAGCTAGTATTAAAAGAACTTCCATCACAATTTATCAAAGTTCTTCACAGTTGAATGCGTCTTTCGACTATTAAATAACTCGCATCATATTTTTATCAAGCTTCAGCCCAGTTTCCTTCTTCAGTTTGGTTCAAGTCTTGATGATCATATAGCAAGTCTAAAATATAAATAATATCAGCAGTAAAACAAGTAGGAAGTTCTCACTATTAAAGATATGGTACTCATGCCTACTATTGGTAGACATTTGACTTTGGCGGTTATTATGTGCACAGAGATCTTTTGAAGAATCTGACGCAACATAAGGATGAGGATCTTCTCAAAGGTCAAGCAGTTAAAAACCAGAAGGTATAGTGTACCAGATTGCACAGACGATAATGTTAGTTTTATCTTCTTACTATTGTTTTTTTTTGGTTGTATATGCACACGTCATGTTGCTTCAATTAAAAGAAATTCTGGTTACAGGGAACATAAATGGCTATCATGTGATTGGAAGTTTTATTCCCCTGTATGTTTTCCATTGATATCTATGTTGTATCTCCAATAGATACTATATGATTGAGTTGCATGTAAAATATACTTCTATTGCTTCTTGGCTTGCCAATGGCTGAAATTTTAGCTATAGTGCTAATATCATTTACTTGATTATTCTTTTCAAGTAATATGATGATTGACTAGTAATTCGATCTAGTGTGGTACATGATTAATGACTTGCCGATCTCCTACTTGAATTGTCCAAGCTTGTCTTACGTAATTGTCAAAATTATGTTATTGACTATCAAAATAAATAAATTGTGTTTTTAACTTTTTCCTTTTTTCTCTCTTTAAATTTCCCAAAGGCTCTCTGGGACAAGACACTTGAGCTAAGATTCTTGCTGCAAAAGGCTTTCTCGAACGCCAATAGACTTCCACAGGTTCATTGGGTTTACCATTTTGTTTCAACACCAGCACTAGATTCATGATATTGACTAATTGAACTTAAATGCATGTTGATCGCCTGCAGGAACCAATTAGGTCTTCCTTTTGTGATTCAGAGGACACAGTTGAAGATGCATATACAGATCTCATTGCCTCTTCCAGAAAAACCTTGGATTCCATACTGGAATTGCAAGAGGTACAGTGAGAACAGTTACTTCATAGTCATTTTTCTTTTGGAGTAACAAAAGATTAGTATGCTTTTCTTTTGCTGGAAACCTGACCATTGCTCCTCCCTAGCGGTCCCATTATGTGATAGGTTGCCACTTTGATATCCCAATATATCCTAAACACGTCACTGATAACCATATTGCAAGCACCTCGATAAAACTATGATCCGTTAGCAATATTCTCTTGTCAAATGCTCTACAAACTTCAAAATTGTTGTCTTGTAATAAAATTTTTTAAACCTGGGTCGAACAAAGTCAACTGATTTATTGATTGTTGTGCATAGTGGATATATGTCTCGTGAAGTAGGATGAAGGGAGTGTTATCTTTTGTTCAGATTAATACAATCCAGCTTTGCCTTTAACCAATTATAAAAGCACATTTTGCCATTTGACAGGTACTACTGGAGAAGAATCCATCAATTACTAAATCAATGGATGGTATGACATATAGCTTTGATTTTGCAGAACTTGAAGAGCTGCCTCCATACTAAAACTTTGAGTGTTAAATGTTCTTTACTCTTGAGTAAATGTTCTTTGCTCTTGAGTTTTTTGAAAATCTGAAGTTCCTTCTTGAAATAATCTAATAATAGTAGTAGTAAAATATTGGTAAAATTAGGATGTAACAAGATGCTCTTTATTAAAATCTGATCCTCAACTCAAGGTATTGACTACTTGAGAGGACTTGCTTTAAAAAACCAAATAGATTAGGTTATACAGGGTCAGATATTTGCTAGATTTTCAAGACCTGCAAAAGAAACCGATTGCTTCTATGTTGCAGCTCTAAACAGTGATCTCTAAGTAAAAGTTCTATAATCCCCTGTTGTCTGTAATTAACTGAAAAAGAATTCCTGGAAATCCTTTCATATGCCACCTTATTTGGTATTGTTTCCAAACTGGAAAATCAAGTCCTGGACCTTTTGCACATCTTTCATATTTAAGCGCCTAATGACCATCAATTTTCCTCATAGCTCAAAGACAACATATGCATCTTTCGGAATTAACATATTCACTGGTTGTTGTTTCTGTAATTTTCTTTCTTGAAGTCAATTCTGGTAAAAGGTCGAAGCTTTTGGAAGATTCTGTAAAGTCAGGTGAAGTTGATGATGATTGGCAGAAGATTTCTCAAATGCATTCAAG</genome_strand>
        <mrna_strand>AAAATGGGCACGTCTTCGAAGAAATCGAGGAAAGTAGAGGAGAGTGAAAGCAACTCTGAATTTGAGAATGATGAAATATTAAATGAGATGTCAGACGAT............................................................................................................GCCGAGAACTTTGATGACGACAGTGATGAAAACAATGACTATACAGACAATGACGATGACGTCGATCATTACAGCAATGAAGATGAAAGTGGAGAACAAGAGGAAGAGGAAGATGAGGAAGGAGATCAAGAAGAAGAAGAGCGAGAAAAACTGACTGAGGAACACAAAAATGCTGAAATGGAAGAACTTGAGAAAGAATATATGGAGCTTAGGCACAAGGAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTTTTGAAGAATCTGACGCAACATAAGGATGAGGATCTTCTCAAAGGTCAAGCAGTTAAAAACCAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTCTGGGACAAGACACTTGAGCTAAGATTCTTGCTGCAAAAGGCTTTCTCGAACGCCAATAGACTTCCACAG.........................................................................................GAACCAATTAGGTCTTCCTTTTGTGATTCAGAGGACACAGTTGAAGATGCATATACAGATCTCATTGCCTCTTCCAGAAAAACCTTGGATTCCATACTGGAATTGCAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTACTGGAGAAGAATCCATCAATTACTAAATCAATGGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATTCTGGTAAAAGGTCGAAGCTTTTGGAAGATTCTGTAAAGTCAGGTGAAGTTGATGATGATTGGCAGAAGATTTCTCAAATGCATTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454869" ref_strand="+" ref_description="SGN-E454869 [cSTS-24-J21]">
      <seq>gaaatcgaggaaagtagaggagagtgaaagcaactctgaatttgagaatgatgaaatattaaatgagatgtcggatgatgccgagaactttgatgacgatggtgatgaaaacaatgactatacagacaacgacgatgacgatgacgtcgatcattacagcaatgaagatgaaagtggagaacaagaggaaggagatcaagaagaagaagagagagaaaaactgactgaggaacacaaaattgctgaaatggaagaacttgagaaagaatatatggagcttaggcacaaggaacaagatcttttgaagaatctgacgcaacataaggatgaggatcttctcaaaggtcaagcagttaaaaaccagaaggctctctgggacaagacacttgagctaagattcttgctgcaaaagcctttctctaacgccaatagacttccacaggaaccaattaggtcttccttttgtgattcagaggacacagttgaagatgcatattcggatctccttgcctcttccagaaaaaccttggattctatactggaattgcaagaggtactactggagaagaatccgtcaattactaaatcaatggatgtcaattctggtaaaaggtcgaagcttttggaagattctgtaaagtcaggtgaagttgatgatgattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="39987" stop="36534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39687" g_stop="39609" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39608" i_stop="39501" i_length="108">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39500" g_stop="39277" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="294" r_length="215" r_score="0.866"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39276" i_stop="38816" i_length="461">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38815" g_stop="38743" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="367" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38742" i_stop="38252" i_length="491">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38251" g_stop="38177" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="442" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38176" i_stop="38088" i_length="89">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38087" g_stop="37977" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="553" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37976" i_stop="37551" i_length="426">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37550" g_stop="37508" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="596" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37507" i_stop="36903" i_length="605">
            <donor d_prob="0.478" d_score="0.98"/>
            <acceptor a_prob="0.498" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36902" g_stop="36834" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="665" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E454869" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39687" e_stop="39609"/>
          <exon e_start="39500" e_stop="39277"/>
          <exon e_start="38815" e_stop="38743"/>
          <exon e_start="38251" e_stop="38177"/>
          <exon e_start="38087" e_stop="37977"/>
          <exon e_start="37550" e_stop="37508"/>
          <exon e_start="36902" e_stop="36834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCGAGGAAAGTAGAGGAGAGTGAAAGCAACTCTGAATTTGAGAATGATGAAATATTAAATGAGATGTCAGACGATGTTAGTTTTTCTCTCTTAAAATCCCTCATGGGTACTTATATGGTTCTATCCTTGATTTTTTTTGTTTCAAATATTTTACAAATGATAAATGTTCTGTGATTTGCTTAGGCCGAGAACTTTGATGACGACAGTGATGAAAACAATGACTATACAGACAATGACGATGACGTCGATCATTACAGCAATGAAGATGAAAGTGGAGAACAAGAGGAAGAGGAAGATGAGGAAGGAGATCAAGAAGAAGAAGAGCGAGAAAAACTGACTGAGGAACACAAAAATGCTGAAATGGAAGAACTTGAGAAAGAATATATGGAGCTTAGGCACAAGGAACAGTAAGTTTCTTTCTCTACAACATAGCTTAGTTTTATGGAATATTTCTAGTTGAACTTATCACCTAATAAGTACATATTTGCTCTTTAATCCCATTAGAGACACAAAGGCTTCTGAGCTGAAGAATGATTTATATCACAATTTATAAGATCACTTGTTTAATAGTGGATTCAATCCATCCAAGATACATCTAGCTAGTATTAAAAGAACTTCCATCACAATTTATCAAAGTTCTTCACAGTTGAATGCGTCTTTCGACTATTAAATAACTCGCATCATATTTTTATCAAGCTTCAGCCCAGTTTCCTTCTTCAGTTTGGTTCAAGTCTTGATGATCATATAGCAAGTCTAAAATATAAATAATATCAGCAGTAAAACAAGTAGGAAGTTCTCACTATTAAAGATATGGTACTCATGCCTACTATTGGTAGACATTTGACTTTGGCGGTTATTATGTGCACAGAGATCTTTTGAAGAATCTGACGCAACATAAGGATGAGGATCTTCTCAAAGGTCAAGCAGTTAAAAACCAGAAGGTATAGTGTACCAGATTGCACAGACGATAATGTTAGTTTTATCTTCTTACTATTGTTTTTTTTTGGTTGTATATGCACACGTCATGTTGCTTCAATTAAAAGAAATTCTGGTTACAGGGAACATAAATGGCTATCATGTGATTGGAAGTTTTATTCCCCTGTATGTTTTCCATTGATATCTATGTTGTATCTCCAATAGATACTATATGATTGAGTTGCATGTAAAATATACTTCTATTGCTTCTTGGCTTGCCAATGGCTGAAATTTTAGCTATAGTGCTAATATCATTTACTTGATTATTCTTTTCAAGTAATATGATGATTGACTAGTAATTCGATCTAGTGTGGTACATGATTAATGACTTGCCGATCTCCTACTTGAATTGTCCAAGCTTGTCTTACGTAATTGTCAAAATTATGTTATTGACTATCAAAATAAATAAATTGTGTTTTTAACTTTTTCCTTTTTTCTCTCTTTAAATTTCCCAAAGGCTCTCTGGGACAAGACACTTGAGCTAAGATTCTTGCTGCAAAAGGCTTTCTCGAACGCCAATAGACTTCCACAGGTTCATTGGGTTTACCATTTTGTTTCAACACCAGCACTAGATTCATGATATTGACTAATTGAACTTAAATGCATGTTGATCGCCTGCAGGAACCAATTAGGTCTTCCTTTTGTGATTCAGAGGACACAGTTGAAGATGCATATACAGATCTCATTGCCTCTTCCAGAAAAACCTTGGATTCCATACTGGAATTGCAAGAGGTACAGTGAGAACAGTTACTTCATAGTCATTTTTCTTTTGGAGTAACAAAAGATTAGTATGCTTTTCTTTTGCTGGAAACCTGACCATTGCTCCTCCCTAGCGGTCCCATTATGTGATAGGTTGCCACTTTGATATCCCAATATATCCTAAACACGTCACTGATAACCATATTGCAAGCACCTCGATAAAACTATGATCCGTTAGCAATATTCTCTTGTCAAATGCTCTACAAACTTCAAAATTGTTGTCTTGTAATAAAATTTTTTAAACCTGGGTCGAACAAAGTCAACTGATTTATTGATTGTTGTGCATAGTGGATATATGTCTCGTGAAGTAGGATGAAGGGAGTGTTATCTTTTGTTCAGATTAATACAATCCAGCTTTGCCTTTAACCAATTATAAAAGCACATTTTGCCATTTGACAGGTACTACTGGAGAAGAATCCATCAATTACTAAATCAATGGATGGTATGACATATAGCTTTGATTTTGCAGAACTTGAAGAGCTGCCTCCATACTAAAACTTTGAGTGTTAAATGTTCTTTACTCTTGAGTAAATGTTCTTTGCTCTTGAGTTTTTTGAAAATCTGAAGTTCCTTCTTGAAATAATCTAATAATAGTAGTAGTAAAATATTGGTAAAATTAGGATGTAACAAGATGCTCTTTATTAAAATCTGATCCTCAACTCAAGGTATTGACTACTTGAGAGGACTTGCTTTAAAAAACCAAATAGATTAGGTTATACAGGGTCAGATATTTGCTAGATTTTCAAGACCTGCAAAAGAAACCGATTGCTTCTATGTTGCAGCTCTAAACAGTGATCTCTAAGTAAAAGTTCTATAATCCCCTGTTGTCTGTAATTAACTGAAAAAGAATTCCTGGAAATCCTTTCATATGCCACCTTATTTGGTATTGTTTCCAAACTGGAAAATCAAGTCCTGGACCTTTTGCACATCTTTCATATTTAAGCGCCTAATGACCATCAATTTTCCTCATAGCTCAAAGACAACATATGCATCTTTCGGAATTAACATATTCACTGGTTGTTGTTTCTGTAATTTTCTTTCTTGAAGTCAATTCTGGTAAAAGGTCGAAGCTTTTGGAAGATTCTGTAAAGTCAGGTGAAGTTGATGATGATTGGC</genome_strand>
        <mrna_strand>GAAATCGAGGAAAGTAGAGGAGAGTGAAAGCAACTCTGAATTTGAGAATGATGAAATATTAAATGAGATGTCGGATGAT............................................................................................................GCCGAGAACTTTGATGACGATGGTGATGAAAACAATGACTATACAGACAACGACGATGACGATGA-C-GTCGATC-AT-TACA-GCAA-TGAAGATGAA-A-GTGGA-GAACAAGAGGAAGGAGATCAAGAAGAAGAAGAGAGAGAAAAACTGACTGAGGAACACAAAATTGCTGAAATGGAAGAACTTGAGAAAGAATATATGGAGCTTAGGCACAAGGAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTTTTGAAGAATCTGACGCAACATAAGGATGAGGATCTTCTCAAAGGTCAAGCAGTTAAAAACCAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTCTGGGACAAGACACTTGAGCTAAGATTCTTGCTGCAAAAGCCTTTCTCTAACGCCAATAGACTTCCACAG.........................................................................................GAACCAATTAGGTCTTCCTTTTGTGATTCAGAGGACACAGTTGAAGATGCATATTCGGATCTCCTTGCCTCTTCCAGAAAAACCTTGGATTCTATACTGGAATTGCAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTACTGGAGAAGAATCCGTCAATTACTAAATCAATGGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATTCTGGTAAAAGGTCGAAGCTTTTGGAAGATTCTGTAAAGTCAGGTGAAGTTGATGATGATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550585" ref_strand="+" ref_description="SGN-E550585 [TUS-11-D3]">
      <seq>ctgagtttcatattcatctgatttaggaggcaggaaaatgggcacgtcttcgaagaaatcgaggaaagtagaggagagtgaaagcaactctgaatttgagaatgatgaaatattaaatgagatgtcagacgatgccgagaactttggagacgacagtgatgaaaacaatgactatacagacaatgacgatgacgtcgatcattacagcaatgaagatgaaagtggagaacaagaggaagaggaagatgaggaaggagatcaagaagaagaagagcgagaaaaactgactgaggaacacaaaaatgctgaaatggaagaacttgagaaagaatatatggagcttaggcacaaggaacaagatcttttgaagaatctgacgcaacataaggatgaggatcttctcaaaggtcaagcagttaaaaaccagaaggctctctgggacaagacacttgagctaagattcttgctgcaaaaggctttctcgaacgccaatagacttccacaggaaccaattaggtcttccttttgtgattcagaggacacagttgaagatgcatatacagatctcattgcctcttccagaaaaaccttggattccatactggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="40708" stop="37685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40408" g_stop="40389" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40388" i_stop="39722" i_length="667">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39721" g_stop="39609" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="133" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39608" i_stop="39501" i_length="108">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39500" g_stop="39277" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="357" r_length="224" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39276" i_stop="38816" i_length="461">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38815" g_stop="38743" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="430" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38742" i_stop="38252" i_length="491">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38251" g_stop="38177" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="505" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38176" i_stop="38088" i_length="89">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38087" g_stop="37985" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="608" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E550585" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40408" e_stop="40389"/>
          <exon e_start="39721" e_stop="39609"/>
          <exon e_start="39500" e_stop="39277"/>
          <exon e_start="38815" e_stop="38743"/>
          <exon e_start="38251" e_stop="38177"/>
          <exon e_start="38087" e_stop="37985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGTTTCATATTCATCTGGTAATAATTTCTACTTCTCTTTAACTGCTTAAATAAAACCCTAGTTGGTTCTTCTCCATTCAATTTAAGCTTAAACGTTATAACTTGTTGATTTAAAGCTGGAAAAGAAGAAGCTTTAACTGCAACACATGTATTTATACATATATTTTTGCTTTTCTAGTTTAATTCTGATGCTTACTATTTGTTTTCTTGTGGTTATGGCTCAGAAATCAAGAAACTAGTAATTAGCTTCAGATATCATGTTTTTTTGGTTCCTAAGGACCCCAACTATTGTATTGTAGACAATGTGTTCGATAATATGTCTAAAGGAGTAAACTTTGCTCTATCAAGATTGTGAATTGATAGAGATAGTATCATACTTCATAAGGTGAACACCCAAGGAATAAGATTTTTTGGGGGCGTAAAGGTGGACACCATAAGGGTAAAAGAAGTGTGCATTGAGCCATGTCATGACATACTGCACAAGGAGAGTACTTCACATATTGAAGTGCTATCCCTGTGAAAATGAAACGCCTATTGCCATCTTGAGGACTTTAGAGTGTGTCTCGTGATTTCCAGCTCTACCTTTTACATATTAGTTTTCAAAAAATTAGGCTTTGTGTTTTTGTCTTGTCGCGAGTGTAATTACCCGATTGATAAATGATGAATTCTTTTTTTGTTTCTTCAGATTTAGGAGGCAGGAAAATGGGCACGTCTTCGAAGAAATCGAGGAAAGTAGAGGAGAGTGAAAGCAACTCTGAATTTGAGAATGATGAAATATTAAATGAGATGTCAGACGATGTTAGTTTTTCTCTCTTAAAATCCCTCATGGGTACTTATATGGTTCTATCCTTGATTTTTTTTGTTTCAAATATTTTACAAATGATAAATGTTCTGTGATTTGCTTAGGCCGAGAACTTTGATGACGACAGTGATGAAAACAATGACTATACAGACAATGACGATGACGTCGATCATTACAGCAATGAAGATGAAAGTGGAGAACAAGAGGAAGAGGAAGATGAGGAAGGAGATCAAGAAGAAGAAGAGCGAGAAAAACTGACTGAGGAACACAAAAATGCTGAAATGGAAGAACTTGAGAAAGAATATATGGAGCTTAGGCACAAGGAACAGTAAGTTTCTTTCTCTACAACATAGCTTAGTTTTATGGAATATTTCTAGTTGAACTTATCACCTAATAAGTACATATTTGCTCTTTAATCCCATTAGAGACACAAAGGCTTCTGAGCTGAAGAATGATTTATATCACAATTTATAAGATCACTTGTTTAATAGTGGATTCAATCCATCCAAGATACATCTAGCTAGTATTAAAAGAACTTCCATCACAATTTATCAAAGTTCTTCACAGTTGAATGCGTCTTTCGACTATTAAATAACTCGCATCATATTTTTATCAAGCTTCAGCCCAGTTTCCTTCTTCAGTTTGGTTCAAGTCTTGATGATCATATAGCAAGTCTAAAATATAAATAATATCAGCAGTAAAACAAGTAGGAAGTTCTCACTATTAAAGATATGGTACTCATGCCTACTATTGGTAGACATTTGACTTTGGCGGTTATTATGTGCACAGAGATCTTTTGAAGAATCTGACGCAACATAAGGATGAGGATCTTCTCAAAGGTCAAGCAGTTAAAAACCAGAAGGTATAGTGTACCAGATTGCACAGACGATAATGTTAGTTTTATCTTCTTACTATTGTTTTTTTTTGGTTGTATATGCACACGTCATGTTGCTTCAATTAAAAGAAATTCTGGTTACAGGGAACATAAATGGCTATCATGTGATTGGAAGTTTTATTCCCCTGTATGTTTTCCATTGATATCTATGTTGTATCTCCAATAGATACTATATGATTGAGTTGCATGTAAAATATACTTCTATTGCTTCTTGGCTTGCCAATGGCTGAAATTTTAGCTATAGTGCTAATATCATTTACTTGATTATTCTTTTCAAGTAATATGATGATTGACTAGTAATTCGATCTAGTGTGGTACATGATTAATGACTTGCCGATCTCCTACTTGAATTGTCCAAGCTTGTCTTACGTAATTGTCAAAATTATGTTATTGACTATCAAAATAAATAAATTGTGTTTTTAACTTTTTCCTTTTTTCTCTCTTTAAATTTCCCAAAGGCTCTCTGGGACAAGACACTTGAGCTAAGATTCTTGCTGCAAAAGGCTTTCTCGAACGCCAATAGACTTCCACAGGTTCATTGGGTTTACCATTTTGTTTCAACACCAGCACTAGATTCATGATATTGACTAATTGAACTTAAATGCATGTTGATCGCCTGCAGGAACCAATTAGGTCTTCCTTTTGTGATTCAGAGGACACAGTTGAAGATGCATATACAGATCTCATTGCCTCTTCCAGAAAAACCTTGGATTCCATACTGGAAT</genome_strand>
        <mrna_strand>CTGAGTTTCATATTCATCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAGGAGGCAGGAAAATGGGCACGTCTTCGAAGAAATCGAGGAAAGTAGAGGAGAGTGAAAGCAACTCTGAATTTGAGAATGATGAAATATTAAATGAGATGTCAGACGAT............................................................................................................GCCGAGAACTTTGGAGACGACAGTGATGAAAACAATGACTATACAGACAATGACGATGACGTCGATCATTACAGCAATGAAGATGAAAGTGGAGAACAAGAGGAAGAGGAAGATGAGGAAGGAGATCAAGAAGAAGAAGAGCGAGAAAAACTGACTGAGGAACACAAAAATGCTGAAATGGAAGAACTTGAGAAAGAATATATGGAGCTTAGGCACAAGGAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTTTTGAAGAATCTGACGCAACATAAGGATGAGGATCTTCTCAAAGGTCAAGCAGTTAAAAACCAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTCTGGGACAAGACACTTGAGCTAAGATTCTTGCTGCAAAAGGCTTTCTCGAACGCCAATAGACTTCCACAG.........................................................................................GAACCAATTAGGTCTTCCTTTTGTGATTCAGAGGACACAGTTGAAGATGCATATACAGATCTCATTGCCTCTTCCAGAAAAACCTTGGATTCCATACTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688211" ref_strand="+" ref_description="SGN-E688211 [t3_tus_11_d03]">
      <seq>ctgagtttcatattcatctgatttaggaggcaggaaaatgggcacgtcttcgaagaaatcgaggaaagtagaggagagtgaaagcaactctgaatttgagaatgatgaaatattaaatgagatgtcagacgatgccgagaactttggagacgacagtgatgaaaacaatgactatacagacaatgacgatgacgtcgatcattacagcaatgaagatgaaagtggagaacaagaggaagaggaagatgaggaaggagatcaagaagaagaagagcgagaaaaactgactgaggaacacaaaaatgctgaaatggaagaacttgagaaagaatatatggagcttaggcacaaggaacaagatcttttgaagaatctgacgcaacataaggatgaggatcttctcaaaggtcaagcagttaaaaaccagaaggctctctgggacaagacacttgagctaagattcttgctgcaaaaggctttctcgaacgccaatagacttccacaggaaccaattaggtcttccttttgtgattcagaggacacagttgaagatgcatatacagatctcattgcctcttccagaaaaaccttggattccatactggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="40708" stop="37685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40408" g_stop="40389" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40388" i_stop="39722" i_length="667">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39721" g_stop="39609" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="133" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39608" i_stop="39501" i_length="108">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39500" g_stop="39277" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="357" r_length="224" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39276" i_stop="38816" i_length="461">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38815" g_stop="38743" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="430" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38742" i_stop="38252" i_length="491">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38251" g_stop="38177" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="505" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38176" i_stop="38088" i_length="89">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38087" g_stop="37985" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="608" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E688211" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40408" e_stop="40389"/>
          <exon e_start="39721" e_stop="39609"/>
          <exon e_start="39500" e_stop="39277"/>
          <exon e_start="38815" e_stop="38743"/>
          <exon e_start="38251" e_stop="38177"/>
          <exon e_start="38087" e_stop="37985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGTTTCATATTCATCTGGTAATAATTTCTACTTCTCTTTAACTGCTTAAATAAAACCCTAGTTGGTTCTTCTCCATTCAATTTAAGCTTAAACGTTATAACTTGTTGATTTAAAGCTGGAAAAGAAGAAGCTTTAACTGCAACACATGTATTTATACATATATTTTTGCTTTTCTAGTTTAATTCTGATGCTTACTATTTGTTTTCTTGTGGTTATGGCTCAGAAATCAAGAAACTAGTAATTAGCTTCAGATATCATGTTTTTTTGGTTCCTAAGGACCCCAACTATTGTATTGTAGACAATGTGTTCGATAATATGTCTAAAGGAGTAAACTTTGCTCTATCAAGATTGTGAATTGATAGAGATAGTATCATACTTCATAAGGTGAACACCCAAGGAATAAGATTTTTTGGGGGCGTAAAGGTGGACACCATAAGGGTAAAAGAAGTGTGCATTGAGCCATGTCATGACATACTGCACAAGGAGAGTACTTCACATATTGAAGTGCTATCCCTGTGAAAATGAAACGCCTATTGCCATCTTGAGGACTTTAGAGTGTGTCTCGTGATTTCCAGCTCTACCTTTTACATATTAGTTTTCAAAAAATTAGGCTTTGTGTTTTTGTCTTGTCGCGAGTGTAATTACCCGATTGATAAATGATGAATTCTTTTTTTGTTTCTTCAGATTTAGGAGGCAGGAAAATGGGCACGTCTTCGAAGAAATCGAGGAAAGTAGAGGAGAGTGAAAGCAACTCTGAATTTGAGAATGATGAAATATTAAATGAGATGTCAGACGATGTTAGTTTTTCTCTCTTAAAATCCCTCATGGGTACTTATATGGTTCTATCCTTGATTTTTTTTGTTTCAAATATTTTACAAATGATAAATGTTCTGTGATTTGCTTAGGCCGAGAACTTTGATGACGACAGTGATGAAAACAATGACTATACAGACAATGACGATGACGTCGATCATTACAGCAATGAAGATGAAAGTGGAGAACAAGAGGAAGAGGAAGATGAGGAAGGAGATCAAGAAGAAGAAGAGCGAGAAAAACTGACTGAGGAACACAAAAATGCTGAAATGGAAGAACTTGAGAAAGAATATATGGAGCTTAGGCACAAGGAACAGTAAGTTTCTTTCTCTACAACATAGCTTAGTTTTATGGAATATTTCTAGTTGAACTTATCACCTAATAAGTACATATTTGCTCTTTAATCCCATTAGAGACACAAAGGCTTCTGAGCTGAAGAATGATTTATATCACAATTTATAAGATCACTTGTTTAATAGTGGATTCAATCCATCCAAGATACATCTAGCTAGTATTAAAAGAACTTCCATCACAATTTATCAAAGTTCTTCACAGTTGAATGCGTCTTTCGACTATTAAATAACTCGCATCATATTTTTATCAAGCTTCAGCCCAGTTTCCTTCTTCAGTTTGGTTCAAGTCTTGATGATCATATAGCAAGTCTAAAATATAAATAATATCAGCAGTAAAACAAGTAGGAAGTTCTCACTATTAAAGATATGGTACTCATGCCTACTATTGGTAGACATTTGACTTTGGCGGTTATTATGTGCACAGAGATCTTTTGAAGAATCTGACGCAACATAAGGATGAGGATCTTCTCAAAGGTCAAGCAGTTAAAAACCAGAAGGTATAGTGTACCAGATTGCACAGACGATAATGTTAGTTTTATCTTCTTACTATTGTTTTTTTTTGGTTGTATATGCACACGTCATGTTGCTTCAATTAAAAGAAATTCTGGTTACAGGGAACATAAATGGCTATCATGTGATTGGAAGTTTTATTCCCCTGTATGTTTTCCATTGATATCTATGTTGTATCTCCAATAGATACTATATGATTGAGTTGCATGTAAAATATACTTCTATTGCTTCTTGGCTTGCCAATGGCTGAAATTTTAGCTATAGTGCTAATATCATTTACTTGATTATTCTTTTCAAGTAATATGATGATTGACTAGTAATTCGATCTAGTGTGGTACATGATTAATGACTTGCCGATCTCCTACTTGAATTGTCCAAGCTTGTCTTACGTAATTGTCAAAATTATGTTATTGACTATCAAAATAAATAAATTGTGTTTTTAACTTTTTCCTTTTTTCTCTCTTTAAATTTCCCAAAGGCTCTCTGGGACAAGACACTTGAGCTAAGATTCTTGCTGCAAAAGGCTTTCTCGAACGCCAATAGACTTCCACAGGTTCATTGGGTTTACCATTTTGTTTCAACACCAGCACTAGATTCATGATATTGACTAATTGAACTTAAATGCATGTTGATCGCCTGCAGGAACCAATTAGGTCTTCCTTTTGTGATTCAGAGGACACAGTTGAAGATGCATATACAGATCTCATTGCCTCTTCCAGAAAAACCTTGGATTCCATACTGGAAT</genome_strand>
        <mrna_strand>CTGAGTTTCATATTCATCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAGGAGGCAGGAAAATGGGCACGTCTTCGAAGAAATCGAGGAAAGTAGAGGAGAGTGAAAGCAACTCTGAATTTGAGAATGATGAAATATTAAATGAGATGTCAGACGAT............................................................................................................GCCGAGAACTTTGGAGACGACAGTGATGAAAACAATGACTATACAGACAATGACGATGACGTCGATCATTACAGCAATGAAGATGAAAGTGGAGAACAAGAGGAAGAGGAAGATGAGGAAGGAGATCAAGAAGAAGAAGAGCGAGAAAAACTGACTGAGGAACACAAAAATGCTGAAATGGAAGAACTTGAGAAAGAATATATGGAGCTTAGGCACAAGGAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTTTTGAAGAATCTGACGCAACATAAGGATGAGGATCTTCTCAAAGGTCAAGCAGTTAAAAACCAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTCTGGGACAAGACACTTGAGCTAAGATTCTTGCTGCAAAAGGCTTTCTCGAACGCCAATAGACTTCCACAG.........................................................................................GAACCAATTAGGTCTTCCTTTTGTGATTCAGAGGACACAGTTGAAGATGCATATACAGATCTCATTGCCTCTTCCAGAAAAACCTTGGATTCCATACTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271007" ref_strand="+" ref_description="SGN-E271007 [cLEM-22-D15]">
      <seq>tgagtttcatattcatctgatttaggaggcaggaaaatgggcacgtcttcgaagaaatcgaggaaagtagaggagagtgaaagcaactctgaatttgagaatgatgaaatattaaatgagatgtcagacgatgccgagaactttgatgacgacagtgatgaaaacaatgactatacagacaatgacgatgacgtcgatcattacagcaatgaagatgaaagtggagaacaagaggaagaggaagatgaggaaggagatcaagaagaagaagagcgagaaaaactgactgaggaacacaaaaatgctgaaatggaagaacttgagaaagaatatatggagcttaggcacaaggaacaagatcttttgaagaatctgacgcaacataaggatgaggatcttctcaaaggtcaagcagttaaaaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="40707" stop="38447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40407" g_stop="40389" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40388" i_stop="39722" i_length="667">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39721" g_stop="39609" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="132" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39608" i_stop="39501" i_length="108">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39500" g_stop="39277" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="356" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39276" i_stop="38816" i_length="461">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38815" g_stop="38747" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="425" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E271007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40407" e_stop="40389"/>
          <exon e_start="39721" e_stop="39609"/>
          <exon e_start="39500" e_stop="39277"/>
          <exon e_start="38815" e_stop="38747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTTTCATATTCATCTGGTAATAATTTCTACTTCTCTTTAACTGCTTAAATAAAACCCTAGTTGGTTCTTCTCCATTCAATTTAAGCTTAAACGTTATAACTTGTTGATTTAAAGCTGGAAAAGAAGAAGCTTTAACTGCAACACATGTATTTATACATATATTTTTGCTTTTCTAGTTTAATTCTGATGCTTACTATTTGTTTTCTTGTGGTTATGGCTCAGAAATCAAGAAACTAGTAATTAGCTTCAGATATCATGTTTTTTTGGTTCCTAAGGACCCCAACTATTGTATTGTAGACAATGTGTTCGATAATATGTCTAAAGGAGTAAACTTTGCTCTATCAAGATTGTGAATTGATAGAGATAGTATCATACTTCATAAGGTGAACACCCAAGGAATAAGATTTTTTGGGGGCGTAAAGGTGGACACCATAAGGGTAAAAGAAGTGTGCATTGAGCCATGTCATGACATACTGCACAAGGAGAGTACTTCACATATTGAAGTGCTATCCCTGTGAAAATGAAACGCCTATTGCCATCTTGAGGACTTTAGAGTGTGTCTCGTGATTTCCAGCTCTACCTTTTACATATTAGTTTTCAAAAAATTAGGCTTTGTGTTTTTGTCTTGTCGCGAGTGTAATTACCCGATTGATAAATGATGAATTCTTTTTTTGTTTCTTCAGATTTAGGAGGCAGGAAAATGGGCACGTCTTCGAAGAAATCGAGGAAAGTAGAGGAGAGTGAAAGCAACTCTGAATTTGAGAATGATGAAATATTAAATGAGATGTCAGACGATGTTAGTTTTTCTCTCTTAAAATCCCTCATGGGTACTTATATGGTTCTATCCTTGATTTTTTTTGTTTCAAATATTTTACAAATGATAAATGTTCTGTGATTTGCTTAGGCCGAGAACTTTGATGACGACAGTGATGAAAACAATGACTATACAGACAATGACGATGACGTCGATCATTACAGCAATGAAGATGAAAGTGGAGAACAAGAGGAAGAGGAAGATGAGGAAGGAGATCAAGAAGAAGAAGAGCGAGAAAAACTGACTGAGGAACACAAAAATGCTGAAATGGAAGAACTTGAGAAAGAATATATGGAGCTTAGGCACAAGGAACAGTAAGTTTCTTTCTCTACAACATAGCTTAGTTTTATGGAATATTTCTAGTTGAACTTATCACCTAATAAGTACATATTTGCTCTTTAATCCCATTAGAGACACAAAGGCTTCTGAGCTGAAGAATGATTTATATCACAATTTATAAGATCACTTGTTTAATAGTGGATTCAATCCATCCAAGATACATCTAGCTAGTATTAAAAGAACTTCCATCACAATTTATCAAAGTTCTTCACAGTTGAATGCGTCTTTCGACTATTAAATAACTCGCATCATATTTTTATCAAGCTTCAGCCCAGTTTCCTTCTTCAGTTTGGTTCAAGTCTTGATGATCATATAGCAAGTCTAAAATATAAATAATATCAGCAGTAAAACAAGTAGGAAGTTCTCACTATTAAAGATATGGTACTCATGCCTACTATTGGTAGACATTTGACTTTGGCGGTTATTATGTGCACAGAGATCTTTTGAAGAATCTGACGCAACATAAGGATGAGGATCTTCTCAAAGGTCAAGCAGTTAAAAACCA</genome_strand>
        <mrna_strand>TGAGTTTCATATTCATCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAGGAGGCAGGAAAATGGGCACGTCTTCGAAGAAATCGAGGAAAGTAGAGGAGAGTGAAAGCAACTCTGAATTTGAGAATGATGAAATATTAAATGAGATGTCAGACGAT............................................................................................................GCCGAGAACTTTGATGACGACAGTGATGAAAACAATGACTATACAGACAATGACGATGACGTCGATCATTACAGCAATGAAGATGAAAGTGGAGAACAAGAGGAAGAGGAAGATGAGGAAGGAGATCAAGAAGAAGAAGAGCGAGAAAAACTGACTGAGGAACACAAAAATGCTGAAATGGAAGAACTTGAGAAAGAATATATGGAGCTTAGGCACAAGGAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTTTTGAAGAATCTGACGCAACATAAGGATGAGGATCTTCTCAAAGGTCAAGCAGTTAAAAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447483" ref_strand="+" ref_description="SGN-E447483 [cSTA-26-P13]">
      <seq>attcatctgatttaggaggcaggaaaatgggcacgtcttcaaagaaatcgaggaaagtagaggagagtgaaagcaactctgaatttgagaatgatgaaatattaaatgagatgtcggatgatgccgagaactttgatgacgatggtgatgaaaacaatgactatacagacaacgacgatgacgatgacgtcgatcattacagcaatgaagatgaaagtggagaacaagaggaaggagatcaagaagaagaagagagagaaaaactgactgaggaacacaaaattgctgaaatggaagaacttgagaaagaatatatggagcttaggcacaaggaacaagatcttttgaagaatctgacgcaacataaggatgaggatcttctcaaaggtcaagcagttaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="40029" stop="38448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39730" g_stop="39609" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39608" i_stop="39501" i_length="108">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39500" g_stop="39277" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="337" r_length="215" r_score="0.866"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39276" i_stop="38816" i_length="461">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38815" g_stop="38748" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="405" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E447483" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.022" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39730" e_stop="39609"/>
          <exon e_start="39500" e_stop="39277"/>
          <exon e_start="38815" e_stop="38748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCAGATTTAGGAGGCAGGAAAATGGGCACGTCTTCGAAGAAATCGAGGAAAGTAGAGGAGAGTGAAAGCAACTCTGAATTTGAGAATGATGAAATATTAAATGAGATGTCAGACGATGTTAGTTTTTCTCTCTTAAAATCCCTCATGGGTACTTATATGGTTCTATCCTTGATTTTTTTTGTTTCAAATATTTTACAAATGATAAATGTTCTGTGATTTGCTTAGGCCGAGAACTTTGATGACGACAGTGATGAAAACAATGACTATACAGACAATGACGATGACGTCGATCATTACAGCAATGAAGATGAAAGTGGAGAACAAGAGGAAGAGGAAGATGAGGAAGGAGATCAAGAAGAAGAAGAGCGAGAAAAACTGACTGAGGAACACAAAAATGCTGAAATGGAAGAACTTGAGAAAGAATATATGGAGCTTAGGCACAAGGAACAGTAAGTTTCTTTCTCTACAACATAGCTTAGTTTTATGGAATATTTCTAGTTGAACTTATCACCTAATAAGTACATATTTGCTCTTTAATCCCATTAGAGACACAAAGGCTTCTGAGCTGAAGAATGATTTATATCACAATTTATAAGATCACTTGTTTAATAGTGGATTCAATCCATCCAAGATACATCTAGCTAGTATTAAAAGAACTTCCATCACAATTTATCAAAGTTCTTCACAGTTGAATGCGTCTTTCGACTATTAAATAACTCGCATCATATTTTTATCAAGCTTCAGCCCAGTTTCCTTCTTCAGTTTGGTTCAAGTCTTGATGATCATATAGCAAGTCTAAAATATAAATAATATCAGCAGTAAAACAAGTAGGAAGTTCTCACTATTAAAGATATGGTACTCATGCCTACTATTGGTAGACATTTGACTTTGGCGGTTATTATGTGCACAGAGATCTTTTGAAGAATCTGACGCAACATAAGGATGAGGATCTTCTCAAAGGTCAAGCAGTTAAAAACC</genome_strand>
        <mrna_strand>ATTCATCTGATTTAGGAGGCAGGAAAATGGGCACGTCTTCAAAGAAATCGAGGAAAGTAGAGGAGAGTGAAAGCAACTCTGAATTTGAGAATGATGAAATATTAAATGAGATGTCGGATGAT............................................................................................................GCCGAGAACTTTGATGACGATGGTGATGAAAACAATGACTATACAGACAACGACGATGACGATGA-C-GTCGATC-AT-TACA-GCAA-TGAAGATGAA-A-GTGGA-GAACAAGAGGAAGGAGATCAAGAAGAAGAAGAGAGAGAAAAACTGACTGAGGAACACAAAATTGCTGAAATGGAAGAACTTGAGAAAGAATATATGGAGCTTAGGCACAAGGAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTTTTGAAGAATCTGACGCAACATAAGGATGAGGATCTTCTCAAAGGTCAAGCAGTTAAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612961" ref_strand="-" ref_description="SGN-E612961 [62730]">
      <seq>tttttttttcctgcctcctaaatctgaagaaacaaaaaaagaatttatcagtcttcaatcgggttattagactcgcgacaagacaaaaacacagcctatttttttcgaaaactaatatttaaaaggtagagctggaaatcacgagacacactctaaagtctttgagatggctataggtgtttaagtttcacagggatagcacttcaataagtgaagtgctccccttgtgcagtatgtcatgacatggctcaatgcacacttttttacccttatggtgtccacctttacaccccaaaaaaatcttattccttgggtgttcgccttatgaagtatgatactatctctatcaattcactatcgtgataaagcaaaggttactcctttagacatattatcgaacacattgtatacaatacaatagttggagtccttaggaccaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="39404" stop="40453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39699" g_stop="40147" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E612961" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612961" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39699" e_stop="40147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCATTTTCCTGCCTCCTAAATCTGAAGAAACAAAAAAAGAATTCATCATTTATCAATCGGGTAATTACACTCGCGACAAGACAAAAACACAAAGCCTAATTTTTT-GAAAACTAATATGTAAAAGGTAGAGCTGGAAATCACGAGACACACTCTAAAGTCCTCAAGATGGCAATAGGCGTTTCATTTTCACAGGGATAGCACTTCAATATGTGAAGTACTCTCCTTGTGCAGTATGTCATGACATGGCTCAATGCACACTTCTTTTACCCTTATGGTGTCCACCTTTACGCCCCCAAAAAATCTTATTCCTTGGGTGTTCACCTTATGAAGTATGATACTATCTCTATCAATTCACAATCTTGATAGAGCAAAGTTTACTCCTTTAGACATATTATCGAACACATTGTCTACAATACAATAGTTGGGGTCCTTAGGAACCAAAAAAAC</genome_strand>
        <mrna_strand>TTTTTTTTTCCTGCCTCCTAAATCTGAAGAAACAAAAAAAGAATTTATCAGTCTTCAATCGGGTTATTAGACTCGCGACAAGACAAAAACACA--GCCTATTTTTTTCGAAAACTAATATTTAAAAGGTAGAGCTGGAAATCACGAGACACACTCTAAAGTCTTTGAGATGGCTATAGGTGTTTAAGTTTCACAGGGATAGCACTTCAATAAGTGAAGTGCTCCCCTTGTGCAGTATGTCATGACATGGCTCAATGCACACTT-TTTTACCCTTATGGTGTCCACCTTTACACCCCAAAAAAATCTTATTCCTTGGGTGTTCGCCTTATGAAGTATGATACTATCTCTATCAATTCACTATCGTGATAAAGCAAAGGTTACTCCTTTAGACATATTATCGAACACATTGTATACAATACAATAGTTGGAGTCCTTAGG-ACCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="48435" stop="49683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48735" g_stop="49383" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48735" e_stop="49383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAATAGGTGGAGTTTCAAGTCATTCAGAACGAGAGAGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGTACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="48436" stop="49420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48736" g_stop="49120" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48736" e_stop="49120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAATAGGTGGAGTTTCAAGTCATTCAGAACGAGAGAGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGTACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="49094" stop="50501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49394" g_stop="50201" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49394" e_stop="50201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTAGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745842" ref_strand="+" ref_description="SGN-E745842 [GI|47105028]">
      <seq>gatcctacaaactgtatttgcactagccaaaggaaaaaagctgtaactcttctgctacaaaagggaacaccccatttctcttcgttctgtcccctcttcctcccttaccccacccccaccaccatttcaaaccccatagcaagaaaaccaccattttctttcttctcttctaaaaaaggggaagaaagaagaaaaaaatagtggaattttttggttttctcagaggaggaaaaaaacagagcaagaaagatgagtagtgaaaaagaagatggtttaggtttgagtttgagcttaggaatcatgagttgccctcagaataatcataaaactacaccttctttacctttgaatctcttgcctttcatgcatcatcatcaagtttcttcagggagaaaagatgaaggtggagaaagggtaagagggggaatagatatgaatgaaccagcgaggatgataatagagtgtgatgatgaagaagatgaagaagaagatcaggtgttaatggtttcctcacctaacagcactgtttctagtgtgagtggaaagaggagtcatgacagagaagagaacgaaggggaaagggccaccagctcactggaggacgacggcggagatgcggcggcaaggaagaaactccggttgtctaaggagcaagctgccgttcttgaagagacattcaaggagcataacacacttaatccgaagcaaaaattggctctgtcaaaacagctgaatctcaggccaagacaagtggaggtgtggtttcagaacagaagggcaaggactaagttgaagcaaaccgaagttgattgtgagtatttgaagcgttgctgcgaaaatctaacggatgaaaaccgacgtttgcagaaagaagttagtgagcttagagcattgaaactttctccacagttttacatgaacatgagccctccaacaacccttacaatgtgccctcaatgcgagcgcgtagctgtatcatcttcttcgtcctcatcgtcagtagtcaacgccactcgcgctcagaaccaccaagcgccggtgcctatgaacaagccatgggctgcaatgttcgcttctaaaacactggatgtgcagaggtcacaaatgtaacttcagtattgtgttgggtagaggaagtgtttatagagcaaggagatgatttacaagagatgtgttgggttgggttttgagaggaacagtttgttgaatttgttcattttatttgtgtaggaaaatggtttttacttgtatggtaagagacataattgtgtttactaaactatttttattattatattatatagtattagcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="53644" stop="56445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53943" g_stop="54330" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54331" i_stop="54542" i_length="212">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54543" g_stop="54856" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="702" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54857" i_stop="55133" i_length="277">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55134" g_stop="55213" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="782" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55214" i_stop="55613" i_length="400">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55614" g_stop="56142" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="1311" r_length="529" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1312" polyA_stop="1326"/>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E745842" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1311</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53943" e_stop="54330"/>
          <exon e_start="54543" e_stop="54856"/>
          <exon e_start="55134" e_stop="55213"/>
          <exon e_start="55614" e_stop="56142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCTACAAACTGTATTTGCACTAGCCAAAGGAAAAAAGCTGTAACTCTTCTGCTACAAAAGGGAACACCCCATTTCTCTTCGTTCTGTCCCCTCTTCCTCCCTTACCCCACCCCCACCACCATTTCAAACCCCATAGCAAGAAAACCACCATTTTCTTTCTTCTCTTCTAAAAAAGGGGAAGAAAGAAGAAAAAAATAGTGGAATTTTTTGGTTTTCTCAGAGGAGGAAAAAAACAGAGCAAGAAAGATGAGTAGTGAAAAAGAAGATGGTTTAGGTTTGAGTTTGAGCTTAGGAATCATGAGTTGCCCTCAGAATAATCATAAAACTACACCTTCTTTACCTTTGAATCTCTTGCCTTTCATGCATCATCATCAAGTTTCTTCAGGTAAAAGTTGTAAAGATTCTTTTTTTTTTGCTCTGTTTTGTTTTATTCATGGATTCCATGGGCTGAGCTAACTAAGACGTTTATGTTTTATCTATTTATAGTTATGTAACCCCTCTTAAATCATGGCTCTGATGCCATTGATGAATGCATGCTCTGTTTTATCGGTCAAAACAAAAAACCCAATTTTTTAAATTTTTTTTTGTTTTTTGCAGGGAGAAAAGATGAAGGTGGAGAAAGGGTAAGAGGGGGAATAGATATGAATGAACCAGCGAGGATGATAATAGAGTGTGATGATGAAGAAGATGAAGAAGAAGATCAGGTGTTAATGGTTTCCTCACCTAACAGCACTGTTTCTAGTGTGAGTGGAAAGAGGAGTCATGACAGAGAAGAGAACGAAGGGGAAAGGGCCACCAGCTCACTGGAGGACGACGGCGGAGATGCGGCGGCAAGGAAGAAACTCCGGTTGTCTAAGGAGCAAGCTGCCGTTCTTGAAGAGACATTCAAGGAGCATAACACACTTAATCCGGTGAGTGGTAATTTTCGTAAATAACCTTGTGGATAAAGGGTAGTTTTGGAAATACCTTTGTTTTTTTTTTACTTCTGTGAAACCATTTACTTCTCATCCAATTTTTCTGTTTTTTATTTAAAATGTAGTTTCTCAATGAATTTTAATTTTACAAATTCAAAGGTGCAGTAACTCTCATTTGACCATAAATTTTGATATTAAAACTTTGATCCTGCATTTTATTTTTTAAAAAATAAGATAAGCGAAATAATTATTAAATGAATTTTTCATATTTCAGAAGCAAAAATTGGCTCTGTCAAAACAGCTGAATCTCAGGCCAAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGGGCAAGGTATGTTATTTGTTTACAGATTCAAGGGTATTTTTGGTATAGGAATAATATTTCACGTTTGTAGCATGAATCTTCCATATTATTATGGAGACACGTGTAAGTGTTCCATTATTAAAATCCAAAAATTATGATATAATCAATCTTGTCTGGGTGATACACGTGTGCATGTATTGTACTTTTCATTTTAAAATATAAAAATTATCTAATAATCTAATTTTTACTAGAAAAATTAATCCCATTTTTCTTTGATCAAACAACATAAATGTATCATATTTGTAAAAAAAAAAACAGCTTTACTATATTCTTGGTATTAATTTAAGTTTTTGAAGTCTGACTAATTCAGATTTACGATGACTTGAATATTTACGCTTGATGTTATTGCTCGATTTGATTGATTCAGGACTAAGTTGAAGCAAACCGAAGTTGATTGTGAGTATTTGAAGCGTTGCTGCGAAAATCTAACGGATGAAAACCGACGTTTGCAGAAAGAAGTTAGTGAGCTTAGAGCATTGAAACTTTCTCCACAGTTTTACATGAACATGAGCCCTCCAACAACCCTTACAATGTGCCCTCAATGCGAGCGCGTAGCTGTATCATCTTCTTCGTCCTCATCGTCAGTAGTCAACGCCACTCGCGCTCAGAACCACCAAGCGCCGGTGCCTATGAACAAGCCATGGGCTGCAATGTTCGCTTCTAAAACACTGGATGTGCAGAGGTCACAAATGTAACTTCAGTATTGTGTTGGGTAGAGGAAGTGTTTATAGAGCAAGGAGATGATTTACAAGAGATGTGTTGGGTTGGGTTTTGAGAGGAACAGTTTGTTGAATTTGTTCATTTTATTTGTGTAGGAAAATGGTTTTTACTTGTATGGTAAGAGACATAATTGTGTTTACTAAACTATTTTTATTATTATATTATATAGTATTAGT</genome_strand>
        <mrna_strand>GATCCTACAAACTGTATTTGCACTAGCCAAAGGAAAAAAGCTGTAACTCTTCTGCTACAAAAGGGAACACCCCATTTCTCTTCGTTCTGTCCCCTCTTCCTCCCTTACCCCACCCCCACCACCATTTCAAACCCCATAGCAAGAAAACCACCATTTTCTTTCTTCTCTTCTAAAAAAGGGGAAGAAAGAAGAAAAAAATAGTGGAATTTTTTGGTTTTCTCAGAGGAGGAAAAAAACAGAGCAAGAAAGATGAGTAGTGAAAAAGAAGATGGTTTAGGTTTGAGTTTGAGCTTAGGAATCATGAGTTGCCCTCAGAATAATCATAAAACTACACCTTCTTTACCTTTGAATCTCTTGCCTTTCATGCATCATCATCAAGTTTCTTCAG....................................................................................................................................................................................................................GGAGAAAAGATGAAGGTGGAGAAAGGGTAAGAGGGGGAATAGATATGAATGAACCAGCGAGGATGATAATAGAGTGTGATGATGAAGAAGATGAAGAAGAAGATCAGGTGTTAATGGTTTCCTCACCTAACAGCACTGTTTCTAGTGTGAGTGGAAAGAGGAGTCATGACAGAGAAGAGAACGAAGGGGAAAGGGCCACCAGCTCACTGGAGGACGACGGCGGAGATGCGGCGGCAAGGAAGAAACTCCGGTTGTCTAAGGAGCAAGCTGCCGTTCTTGAAGAGACATTCAAGGAGCATAACACACTTAATCCG.....................................................................................................................................................................................................................................................................................AAGCAAAAATTGGCTCTGTCAAAACAGCTGAATCTCAGGCCAAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGGGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................GACTAAGTTGAAGCAAACCGAAGTTGATTGTGAGTATTTGAAGCGTTGCTGCGAAAATCTAACGGATGAAAACCGACGTTTGCAGAAAGAAGTTAGTGAGCTTAGAGCATTGAAACTTTCTCCACAGTTTTACATGAACATGAGCCCTCCAACAACCCTTACAATGTGCCCTCAATGCGAGCGCGTAGCTGTATCATCTTCTTCGTCCTCATCGTCAGTAGTCAACGCCACTCGCGCTCAGAACCACCAAGCGCCGGTGCCTATGAACAAGCCATGGGCTGCAATGTTCGCTTCTAAAACACTGGATGTGCAGAGGTCACAAATGTAACTTCAGTATTGTGTTGGGTAGAGGAAGTGTTTATAGAGCAAGGAGATGATTTACAAGAGATGTGTTGGGTTGGGTTTTGAGAGGAACAGTTTGTTGAATTTGTTCATTTTATTTGTGTAGGAAAATGGTTTTTACTTGTATGGTAAGAGACATAATTGTGTTTACTAAACTATTTTTATTATTATATTATATAGTATTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745226" ref_strand="+" ref_description="SGN-E745226 [GI|992597]">
      <seq>cgcccttaccccacccccaccaccatttcaaaccccatagcaagaaaaccaccattttctttcttctcttctaaaaaaggggaagaaagaagaaaaaaatagtggaattttttggttttctcagaggaggaaaaaaacagagcaagaaagatgagtagtgaaaaagaagatggtttaggtttgagtttgagcttaggaatcatgagttgccctcagaataatcataaaactacaccttctttacctttgaatctcttgcctttcatgcatcatcatcaagtttcttcagggagaaaagatgaaggtggagaaagggtaagagggggaatagatatgaatgaaccagcgaggatgataatagagtgtgatgatgaagaagatgaagaagaagatcaggtgttaatggtttcctcacctaacagcactgtttctagtgtgagtggaaagaggagtcatgacagagaagagaacgaaggggaaagggccaccagctcactggaggacgacggcggagatgcggcggcaaggaagaaactccggttgtctaaggagcaagctgccgttcttgaagagacattcaaggagcataacacacttaatccgaagcaaaaattggctctgtcaaaacagctgaatctcaggccaagacaagtggaggtgtggtttcagaacagaagggcaaggactaagttgaagcaaaccgaagttgattgtgagtatttgaagcgttgctgcgaaaatctaacggatgaaaaccgacgtttgcagaaagaagttagtgagcttagagcattgaaactttctccacagttttacatgaacatgagccctccaacaacccttacaatgtgccctcaatgcgagcgcgtagctgtatcatcttcttcgtcctcatcgtcagtagtcaacgccactcgcgctcagaaccaccaagcgccggtgcctatgaacaagccatgggctgcaatgttcgcttctaaaacactggatgtgcagaggtcacaaatgtaacttcagtattgtgttgggtagaggaagtgtttatagagcaaggagatgatttacaagagatgtgttgggttgggttttgagaggaacagtttgttgaatttgttcattttatttgtgtaggaaaatggtttttacttgtatggtaagagacataattgtgtttactaaactatttttattattatattatatagtattagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="53742" stop="56445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54042" g_stop="54330" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54331" i_stop="54542" i_length="212">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54543" g_stop="54856" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="603" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54857" i_stop="55133" i_length="277">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55134" g_stop="55213" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="683" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55214" i_stop="55613" i_length="400">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55614" g_stop="56142" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="1212" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1213" polyA_stop="1241"/>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E745226" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1212</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54042" e_stop="54330"/>
          <exon e_start="54543" e_stop="54856"/>
          <exon e_start="55134" e_stop="55213"/>
          <exon e_start="55614" e_stop="56142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTTACCCCACCCCCACCACCATTTCAAACCCCATAGCAAGAAAACCACCATTTTCTTTCTTCTCTTCTAAAAAAGGGGAAGAAAGAAGAAAAAAATAGTGGAATTTTTTGGTTTTCTCAGAGGAGGAAAAAAACAGAGCAAGAAAGATGAGTAGTGAAAAAGAAGATGGTTTAGGTTTGAGTTTGAGCTTAGGAATCATGAGTTGCCCTCAGAATAATCATAAAACTACACCTTCTTTACCTTTGAATCTCTTGCCTTTCATGCATCATCATCAAGTTTCTTCAGGTAAAAGTTGTAAAGATTCTTTTTTTTTTGCTCTGTTTTGTTTTATTCATGGATTCCATGGGCTGAGCTAACTAAGACGTTTATGTTTTATCTATTTATAGTTATGTAACCCCTCTTAAATCATGGCTCTGATGCCATTGATGAATGCATGCTCTGTTTTATCGGTCAAAACAAAAAACCCAATTTTTTAAATTTTTTTTTGTTTTTTGCAGGGAGAAAAGATGAAGGTGGAGAAAGGGTAAGAGGGGGAATAGATATGAATGAACCAGCGAGGATGATAATAGAGTGTGATGATGAAGAAGATGAAGAAGAAGATCAGGTGTTAATGGTTTCCTCACCTAACAGCACTGTTTCTAGTGTGAGTGGAAAGAGGAGTCATGACAGAGAAGAGAACGAAGGGGAAAGGGCCACCAGCTCACTGGAGGACGACGGCGGAGATGCGGCGGCAAGGAAGAAACTCCGGTTGTCTAAGGAGCAAGCTGCCGTTCTTGAAGAGACATTCAAGGAGCATAACACACTTAATCCGGTGAGTGGTAATTTTCGTAAATAACCTTGTGGATAAAGGGTAGTTTTGGAAATACCTTTGTTTTTTTTTTACTTCTGTGAAACCATTTACTTCTCATCCAATTTTTCTGTTTTTTATTTAAAATGTAGTTTCTCAATGAATTTTAATTTTACAAATTCAAAGGTGCAGTAACTCTCATTTGACCATAAATTTTGATATTAAAACTTTGATCCTGCATTTTATTTTTTAAAAAATAAGATAAGCGAAATAATTATTAAATGAATTTTTCATATTTCAGAAGCAAAAATTGGCTCTGTCAAAACAGCTGAATCTCAGGCCAAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGGGCAAGGTATGTTATTTGTTTACAGATTCAAGGGTATTTTTGGTATAGGAATAATATTTCACGTTTGTAGCATGAATCTTCCATATTATTATGGAGACACGTGTAAGTGTTCCATTATTAAAATCCAAAAATTATGATATAATCAATCTTGTCTGGGTGATACACGTGTGCATGTATTGTACTTTTCATTTTAAAATATAAAAATTATCTAATAATCTAATTTTTACTAGAAAAATTAATCCCATTTTTCTTTGATCAAACAACATAAATGTATCATATTTGTAAAAAAAAAAACAGCTTTACTATATTCTTGGTATTAATTTAAGTTTTTGAAGTCTGACTAATTCAGATTTACGATGACTTGAATATTTACGCTTGATGTTATTGCTCGATTTGATTGATTCAGGACTAAGTTGAAGCAAACCGAAGTTGATTGTGAGTATTTGAAGCGTTGCTGCGAAAATCTAACGGATGAAAACCGACGTTTGCAGAAAGAAGTTAGTGAGCTTAGAGCATTGAAACTTTCTCCACAGTTTTACATGAACATGAGCCCTCCAACAACCCTTACAATGTGCCCTCAATGCGAGCGCGTAGCTGTATCATCTTCTTCGTCCTCATCGTCAGTAGTCAACGCCACTCGCGCTCAGAACCACCAAGCGCCGGTGCCTATGAACAAGCCATGGGCTGCAATGTTCGCTTCTAAAACACTGGATGTGCAGAGGTCACAAATGTAACTTCAGTATTGTGTTGGGTAGAGGAAGTGTTTATAGAGCAAGGAGATGATTTACAAGAGATGTGTTGGGTTGGGTTTTGAGAGGAACAGTTTGTTGAATTTGTTCATTTTATTTGTGTAGGAAAATGGTTTTTACTTGTATGGTAAGAGACATAATTGTGTTTACTAAACTATTTTTATTATTATATTATATAGTATTAGT</genome_strand>
        <mrna_strand>CGCCCTTACCCCACCCCCACCACCATTTCAAACCCCATAGCAAGAAAACCACCATTTTCTTTCTTCTCTTCTAAAAAAGGGGAAGAAAGAAGAAAAAAATAGTGGAATTTTTTGGTTTTCTCAGAGGAGGAAAAAAACAGAGCAAGAAAGATGAGTAGTGAAAAAGAAGATGGTTTAGGTTTGAGTTTGAGCTTAGGAATCATGAGTTGCCCTCAGAATAATCATAAAACTACACCTTCTTTACCTTTGAATCTCTTGCCTTTCATGCATCATCATCAAGTTTCTTCAG....................................................................................................................................................................................................................GGAGAAAAGATGAAGGTGGAGAAAGGGTAAGAGGGGGAATAGATATGAATGAACCAGCGAGGATGATAATAGAGTGTGATGATGAAGAAGATGAAGAAGAAGATCAGGTGTTAATGGTTTCCTCACCTAACAGCACTGTTTCTAGTGTGAGTGGAAAGAGGAGTCATGACAGAGAAGAGAACGAAGGGGAAAGGGCCACCAGCTCACTGGAGGACGACGGCGGAGATGCGGCGGCAAGGAAGAAACTCCGGTTGTCTAAGGAGCAAGCTGCCGTTCTTGAAGAGACATTCAAGGAGCATAACACACTTAATCCG.....................................................................................................................................................................................................................................................................................AAGCAAAAATTGGCTCTGTCAAAACAGCTGAATCTCAGGCCAAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGGGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................GACTAAGTTGAAGCAAACCGAAGTTGATTGTGAGTATTTGAAGCGTTGCTGCGAAAATCTAACGGATGAAAACCGACGTTTGCAGAAAGAAGTTAGTGAGCTTAGAGCATTGAAACTTTCTCCACAGTTTTACATGAACATGAGCCCTCCAACAACCCTTACAATGTGCCCTCAATGCGAGCGCGTAGCTGTATCATCTTCTTCGTCCTCATCGTCAGTAGTCAACGCCACTCGCGCTCAGAACCACCAAGCGCCGGTGCCTATGAACAAGCCATGGGCTGCAATGTTCGCTTCTAAAACACTGGATGTGCAGAGGTCACAAATGTAACTTCAGTATTGTGTTGGGTAGAGGAAGTGTTTATAGAGCAAGGAGATGATTTACAAGAGATGTGTTGGGTTGGGTTTTGAGAGGAACAGTTTGTTGAATTTGTTCATTTTATTTGTGTAGGAAAATGGTTTTTACTTGTATGGTAAGAGACATAATTGTGTTTACTAAACTATTTTTATTATTATATTATATAGTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E414247" ref_strand="+" ref_description="SGN-E414247 [STM-19-O13]">
      <seq>agaagatggtttaggtttgagtctgagcttaggaatcatgagttgccctcaaaataatcataaaactcctcctcctttccctttgaatctcttacctttcatgcaccatcatcaaatttcatcagggagaaaagatgagggaggagaaagggtaagagggggaatagatatgaatgaaccagcgaggatgattatagagtgtgatgatgatgaagaagatgaagaagaagatcaggtgttaatggtttcatcacctaacagcactgtttcgagtgtgagtggaaagaggagtcatgacagagaagagaatgaaggggagagggccaccagctcactggaggatgacggcggagatgcggcggcaaggaagaaactccggctgtcaaaggagcaagctgccgttcttgaagagacattcaaggagcacaacactcttaatccgaagcaaaaattggctctggcaaaacagctgaatctgaggccaagacaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="53906" stop="55484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54206" g_stop="54330" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54331" i_stop="54542" i_length="212">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54543" g_stop="54856" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="442" r_length="317" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54857" i_stop="55133" i_length="277">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55134" g_stop="55184" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="493" r_length="51" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E414247" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54206" e_stop="54330"/>
          <exon e_start="54543" e_stop="54856"/>
          <exon e_start="55134" e_stop="55184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATGGTTTAGGTTTGAGTTTGAGCTTAGGAATCATGAGTTGCCCTCAGAATAATCATAAAACTACACCTTCTTTACCTTTGAATCTCTTGCCTTTCATGCATCATCATCAAGTTTCTTCAGGTAAAAGTTGTAAAGATTCTTTTTTTTTTGCTCTGTTTTGTTTTATTCATGGATTCCATGGGCTGAGCTAACTAAGACGTTTATGTTTTATCTATTTATAGTTATGTAACCCCTCTTAAATCATGGCTCTGATGCCATTGATGAATGCATGCTCTGTTTTATCGGTCAAAACAAAAAACCCAATTTTTTAAATTTTTTTTTGTTTTTTGCAGGGAGAAAAGATGAAGGTGGAGAAAGGGTAAGAGGGGGAATAGATATGAATGAACCAGCGAGGATGATAATAGA--GTG-TGATGATGAAGAAGATGAAGAAGAAGATCAGGTGTTAATGGTTTCCTCACCTAACAGCACTGTTTCTAGTGTGAGTGGAAAGAGGAGTCATGACAGAGAAGAGAACGAAGGGGAAAGGGCCACCAGCTCACTGGAGGACGACGGCGGAGATGCGGCGGCAAGGAAGAAACTCCGGTTGTCTAAGGAGCAAGCTGCCGTTCTTGAAGAGACATTCAAGGAGCATAACACACTTAATCCGGTGAGTGGTAATTTTCGTAAATAACCTTGTGGATAAAGGGTAGTTTTGGAAATACCTTTGTTTTTTTTTTACTTCTGTGAAACCATTTACTTCTCATCCAATTTTTCTGTTTTTTATTTAAAATGTAGTTTCTCAATGAATTTTAATTTTACAAATTCAAAGGTGCAGTAACTCTCATTTGACCATAAATTTTGATATTAAAACTTTGATCCTGCATTTTATTTTTTAAAAAATAAGATAAGCGAAATAATTATTAAATGAATTTTTCATATTTCAGAAGCAAAAATTGGCTCTGTCAAAACAGCTGAATCTCAGGCCAAGACAAGTG</genome_strand>
        <mrna_strand>AGAAGATGGTTTAGGTTTGAGTCTGAGCTTAGGAATCATGAGTTGCCCTCAAAATAATCATAAAACTCCTCCTCCTTTCCCTTTGAATCTCTTACCTTTCATGCACCATCATCAAATTTCATCAG....................................................................................................................................................................................................................GGAGAAAAGATGAGGGAGGAGAAAGGGTAAGAGGGGGAATAGATATGAATGAACCAGCGAGGATGATTATAGAGTGTGATGATGATGAAGAAGATGAAGAAGAAGATCAGGTGTTAATGGTTTCATCACCTAACAGCACTGTTTCGAGTGTGAGTGGAAAGAGGAGTCATGACAGAGAAGAGAATGAAGGGGAGAGGGCCACCAGCTCACTGGAGGATGACGGCGGAGATGCGGCGGCAAGGAAGAAACTCCGGCTGTCAAAGGAGCAAGCTGCCGTTCTTGAAGAGACATTCAAGGAGCACAACACTCTTAATCCG.....................................................................................................................................................................................................................................................................................AAGCAAAAATTGGCTCTGGCAAAACAGCTGAATCTGAGGCCAAGACAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473524" ref_strand="+" ref_description="SGN-E473524 [cSTB-32-N9]">
      <seq>agaagatggtttaggtttgagtctgagcttaggaatcatgagttgccctcaaaataatcataaaactcctcctcctttccctttgaatctcttacctttcatgcaccatcatcaaatttcatcagggagaaaagatgagggaggagaaagggtaagagggggaatagatatgaatgaaccagcgaggatgattatagagcgtgatgatgatgaagaagatgaagaagaagatcaggtgttaatggtttcatcacctaacagcactgtttcgagtgtgagtggaaagaggagtcatgacacagaagagaatgaaggggagagggccaccagctcactggaggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="53906" stop="55059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54206" g_stop="54330" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54331" i_stop="54542" i_length="212">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54543" g_stop="54759" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="345" r_length="220" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E473524" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54206" e_stop="54330"/>
          <exon e_start="54543" e_stop="54759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATGGTTTAGGTTTGAGTTTGAGCTTAGGAATCATGAGTTGCCCTCAGAATAATCATAAAACTACACCTTCTTTACCTTTGAATCTCTTGCCTTTCATGCATCATCATCAAGTTTCTTCAGGTAAAAGTTGTAAAGATTCTTTTTTTTTTGCTCTGTTTTGTTTTATTCATGGATTCCATGGGCTGAGCTAACTAAGACGTTTATGTTTTATCTATTTATAGTTATGTAACCCCTCTTAAATCATGGCTCTGATGCCATTGATGAATGCATGCTCTGTTTTATCGGTCAAAACAAAAAACCCAATTTTTTAAATTTTTTTTTGTTTTTTGCAGGGAGAAAAGATGAAGGTGGAGAAAGGGTAAGAGGGGGAATAGATATGAATGAACCAGCGAGGATGATAATAGA--GTG-TGATGATGAAGAAGATGAAGAAGAAGATCAGGTGTTAATGGTTTCCTCACCTAACAGCACTGTTTCTAGTGTGAGTGGAAAGAGGAGTCATGACAGAGAAGAGAACGAAGGGGAAAGGGCCACCAGCTCACTGGAGGACGA</genome_strand>
        <mrna_strand>AGAAGATGGTTTAGGTTTGAGTCTGAGCTTAGGAATCATGAGTTGCCCTCAAAATAATCATAAAACTCCTCCTCCTTTCCCTTTGAATCTCTTACCTTTCATGCACCATCATCAAATTTCATCAG....................................................................................................................................................................................................................GGAGAAAAGATGAGGGAGGAGAAAGGGTAAGAGGGGGAATAGATATGAATGAACCAGCGAGGATGATTATAGAGCGTGATGATGATGAAGAAGATGAAGAAGAAGATCAGGTGTTAATGGTTTCATCACCTAACAGCACTGTTTCGAGTGTGAGTGGAAAGAGGAGTCATGACACAGAAGAGAATGAAGGGGAGAGGGCCACCAGCTCACTGGAGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724089" ref_strand="+" ref_description="SGN-E724089 [FC23AB01]">
      <seq>gactagaaaaattactcccatttttctttgatcaaacaacataaatgtatcatatttgtaaaaaaaaaaacagctttactatattcttggtattaatttaagtttttgaagtctgactaattcaaatttacaatgacttgaatatttacccttgatgttattgctcgatttgattgattcaggactaagttgaagcaaaccgaagttgattgtgagtatttgaagcgttgctgcaaaaatctaacggatgaaaaccgacgtttgcaaaaagaagttagtgagcttaaagcattgaaactttctccacagttttacatgaacatgagccctccaacaacccttacaatgtgccctcaatgcgagcgcgtagctgtatcatcttcttcgtcctcatcgtcagtagtcaacgccactcgcgctcaaaaccaccaagcgccggtgcctatgaacaagccatgggctgcaatgttcgcttctaaaacactggatgtgcaaaggtcacaaatgtaacttcagtattgtgttgggtagaggaagtgtttatagagcaaggagatgatttacaaaaaatgtgttgggttgggttttgagaggaacagtttgttgaatttgttcattttatttgtgtaggaaaatggtttttacttgtatggtaagagacataattgtgtttactaaactatttttattattatattatatagnattagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatattaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="55133" stop="56445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55432" g_stop="56142" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="732" polyA_stop="755"/>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E724089" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55432" e_stop="56142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTAGAAAAATTAATCCCATTTTTCTTTGATCAAACAACATAAATGTATCATATTTGTAAAAAAAAAAACAGCTTTACTATATTCTTGGTATTAATTTAAGTTTTTGAAGTCTGACTAATTCAGATTTACGATGACTTGAATATTTACGCTTGATGTTATTGCTCGATTTGATTGATTCAGGACTAAGTTGAAGCAAACCGAAGTTGATTGTGAGTATTTGAAGCGTTGCTGCGAAAATCTAACGGATGAAAACCGACGTTTGCAGAAAGAAGTTAGTGAGCTTAGAGCATTGAAACTTTCTCCACAGTTTTACATGAACATGAGCCCTCCAACAACCCTTACAATGTGCCCTCAATGCGAGCGCGTAGCTGTATCATCTTCTTCGTCCTCATCGTCAGTAGTCAACGCCACTCGCGCTCAGAACCACCAAGCGCCGGTGCCTATGAACAAGCCATGGGCTGCAATGTTCGCTTCTAAAACACTGGATGTGCAGAGGTCACAAATGTAACTTCAGTATTGTGTTGGGTAGAGGAAGTGTTTATAGAGCAAGGAGATGATTTACAAGAGATGTGTTGGGTTGGGTTTTGAGAGGAACAGTTTGTTGAATTTGTTCATTTTATTTGTGTAGGAAAATGGTTTTTACTTGTATGGTAAGAGACATAATTGTGTTTACTAAACTATTTTTATTATTATATTATATAGTATTAGT</genome_strand>
        <mrna_strand>GACTAGAAAAATTACTCCCATTTTTCTTTGATCAAACAACATAAATGTATCATATTTGTAAAAAAAAAAACAGCTTTACTATATTCTTGGTATTAATTTAAGTTTTTGAAGTCTGACTAATTCAAATTTACAATGACTTGAATATTTACCCTTGATGTTATTGCTCGATTTGATTGATTCAGGACTAAGTTGAAGCAAACCGAAGTTGATTGTGAGTATTTGAAGCGTTGCTGCAAAAATCTAACGGATGAAAACCGACGTTTGCAAAAAGAAGTTAGTGAGCTTAAAGCATTGAAACTTTCTCCACAGTTTTACATGAACATGAGCCCTCCAACAACCCTTACAATGTGCCCTCAATGCGAGCGCGTAGCTGTATCATCTTCTTCGTCCTCATCGTCAGTAGTCAACGCCACTCGCGCTCAAAACCACCAAGCGCCGGTGCCTATGAACAAGCCATGGGCTGCAATGTTCGCTTCTAAAACACTGGATGTGCAAAGGTCACAAATGTAACTTCAGTATTGTGTTGGGTAGAGGAAGTGTTTATAGAGCAAGGAGATGATTTACAAAAAATGTGTTGGGTTGGGTTTTGAGAGGAACAGTTTGTTGAATTTGTTCATTTTATTTGTGTAGGAAAATGGTTTTTACTTGTATGGTAAGAGACATAATTGTGTTTACTAAACTATTTTTATTATTATATTATATAGNATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E616707" ref_strand="+" ref_description="SGN-E616707 [90176]">
      <seq>ttaaagatcaaaatttgaagcatccaaaaacactctcaataaagatccctaaagctgattgcttgtgcaattggggctcaaggttttaggagctgtctacaaatggctgagattgtagaagcagataattacgaaggcataatcacaagaatcgagcacaagtcccgcaagatcgaaagtttactcaaacagtataaaccagtggaagctctgaaaacagctctagaaggatcacctcccaaaaccaaggatgaaagatgcaagtctgctaattggatagtggtgcatagggctataatggctaacaaggatgtggatagcttgttctctgcattggatcctgagtactatgatattctcatgaagtacttgtacagaggtttgtctactggagaccgcccaacatgtgaccaatgtctaaggatccatgaaaaactaacagaaaaagctggtttgggatgcatactgcgttgtcttgctgacactgtgaatactgtgtgactaatacgctggatgaacacaatactgtagcaatctgtacatgtcttgtctttgcatttcgattgaatattgatgttgagattgagtttagcctattttcaaagggctgcttcctctcctttagtcgtctgtattcttcgcgacatataacatatgaactgtaccaaggcaatttgagatttctgccatcctttagtgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="62818" stop="56869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62521" g_stop="62327" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62326" i_stop="62201" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62200" g_stop="62128" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="264" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62127" i_stop="62008" i_length="120">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62007" g_stop="61907" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="365" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61906" i_stop="57496" i_length="4411">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57495" g_stop="57170" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="700" r_length="335" r_score="0.917"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57169" i_stop="57004" i_length="166">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57003" g_stop="56994" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="710" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E616707" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62521" e_stop="62327"/>
          <exon e_start="62200" e_stop="62128"/>
          <exon e_start="62007" e_stop="61907"/>
          <exon e_start="57495" e_stop="57170"/>
          <exon e_start="57003" e_stop="56994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGGACCAAAATTTGAAGCATCCAAAAAACACTCTCAATAAAAATCCCCTAAAGCTGATTGCTTGTGCAATTGAGGAGGCTCAAGGTTTT-GGAGCTGTCTACAAATGGCTGAGATTGTCGAAGCAGATAATTACGAAGGCATAATCACAAGAATCGAGCACAAGTCCCGCAAGATCGAAAGTTTACTCAAACAGTACACAAATTTTCTACCCTTTATAAAGTTTCAATTTTTCCTTTTTCATATCTGCATAAAAACAGAACCCCACTTCTGTAATTGTTTAATAATGAATACCCATTTGTGATTTTGGTTATTTGTTAGGTATAAACCAGTGGAAGCTCTGAAAACAGCTCTAGAAGGATCACCTCCTAAGACCAAGGATGAAAGATGCAAGGTTCAATCTTTTTGCTCATGGCTTTTGTAAAAGTATGTTTTTTTTAATTAGAATATGAGTCTACTCACAGCTTGTGAGTTGACAGTTTTCTTTTTTTTTTGTGTGTGTTTGTTTTTGCAGTCTGCTAATTGGATAGTGGTGCATAGGGCTATAATGGCTATCAAGGATGTGGATAGCTTGTTCTCTGCATTGGATCCTGAGTATTATGATATTCTCATGAAGTAAGTTCATTTTTTCCCCTAATTATTATATGTATTGAGGCCTAGATGTGAATCCTGTCCATAGAAATTTGTTATGGTGGTATGATTCGAGTACTATATCTCCGATGCTTCATTATTGCCTACTGGAATATAGAATGTAAATGGCAAGATCATGTGAATTGTGTGAAATCAGTGATTTTATTTACTTGAGGGCTTTGATGCATTTTTGACTGATTGAGATTTGGACAAAGGGACTCCACTTAATTATCTATACTTGTTTAGCAATCCTCAAAATATTATTGTTCAGGCTCTGGTGCTGCTGTTATGCATACATTAATGGGAATGTGATGCAAGGCTTGTAATCCCATCTTCACAAAGATATTTAGAACTTTAACATTTCAGTTGAGTTACAAAAATTGATGCAAGGAAGTGGAATTTAAAGAAATCTAAATCTGGCAGAGAAGTATCCGACAATGATCTTTTGAAATTGAACCATCTGATGGAAATCAGAGAAGGTTTTATTGAAGTTCCAGAGCTTGTCTTTTCAGGAAATAGCTGACAAACTCTTTGAGCTGATGGTGTTGCAATGCATTACTTCGTGCAGTTAAGTATATATATAATTAATTTTAAGATCAAGAAGAAAGTGCTGCTCTATGATTAAATAGACAAATAATGTACTAGGCCAGTTTGCGTATAACAACCAGTTTAGAGTGATAAACATGTTCAAGTAGAAATAAGCCAGGACAGAATATCCTAGTGATAAAATCCTTATACCTCCAGTTTTGATGTCGGGGACTCGGGGTTTGAGTCACCAATGGAAGAAAAATGGAAAAAGCCACACTGTTGGAATCCTAGGTTCAGGAACCTTGGGGATGGGGTTTACCATACTCAGACAAGAAAAACAGTTAAGTAGAATAATCGATTGAACAATCTTTTAAAGCTCTTACATTGAGTATCATGGCCTGAAAATCATATATTTTGAGATTGCACATTCTTATATATATATATTATGTTTATTTACTTTAGGTTAAAATGGATTTGAGATGGGTCATGAAATCTGTTGACAATGAAATACTTCGTTAAGATTTTTGAAGAACTTTAATCGGACATTTTGGTAAATGCCAACAATATGCTTTTTCAAATTTAATTGACAACATGCAAACATTTTTTGACCACAGCTCAGGTTTTTTAATGTGCAACAACTAGCTAAACTTGGTATTGTTTTACATCTCAATGATACAGCTTTGAAGAAATGTTTTTTTAAATGAATGCACCATGTTGGTAGGTGAGAATGTCTTTTCATTGATTTTATACTATAAGCAACCAGGACTGGTGTAATACTTGCTAGTTGCTTGATCGGGTATAAATCTCAGTCCTGAAATCTGAGGTGAGACTACATACTTGAACACTAAAATAAAGTTTATGGAATATTGACAAGAAGGGTCTGAAAGTTCATTTGGAATAACTTGGGTTGGTATGTATATCTGGCGCTAAGATGAAGATATTTCAACTTAAGAACCAAGGGACTTCTCTTACTTTTATCTATATGTTGTTTCTTTACAAAATTTTACCTTCAACTTATGATAAAGGGCTTAATTCAGGGGTTGGAAGGGGTGAAGTTCCTAATTTCTGGAAACATCTGTAGATAAGAACTTGGTAAAAAAAAAAAAGCAAAGTTGGCCCTACATTTAAATGTGTAGCATATTTACAACTCTCATATATTAGCTTAAAATATTGGCCGAGGAGATTGAGAATAGAGAGATATAGAGCTTTAACTTGCTACTGGGATGACTTGGAGAAATTTGGCATGATCAGTCAAGATAGGTCTGACCTATGTGGTGATCATGTTTGGGTACTTTTTATTGGTTTTGTACGGGCTTAAATAAGTTGAGTTAGTACGGAAGTCAGGTTTTGGTATTATAATCTTGAACTTGAGATGCTCAGGTTGGTATAGATTTTTCAGTAAGGCTAGACACCTTCCCTGTTGTAGCTTAGAATATTATGGGATAGCTCGCTGCTGCAAATCAAGGAAGAAACATTGAACGCACAGTCTCAGAGATTCAATCCGTTATGCCACTGTTCTAAATGGCGGCAATTATCGATATTGAGAAATGAGAGAGACTTAAATGGTAGGCAAGTAGACCATTTACATACTGCTCCGCACTTAGAAGTCAGTCCCCGCTGGTTCAAATTGTCTCTTAGGATAGATGTGACTGATAAGTCCTCGTTTTTCTTTCCATTTATCAGAAAGAAAAGGACCTTGTCTTTCCTTTTTGTTTTGTGAAACAATTGAACTATTTTCTTCTATCAAAATATTGTATAGCCTTCTTGCTTTGAGATACAAATTTCTCTTGATATGTACATTCTGCACTGTAGTAAGCATACTGTAGTAGGAGATGCATAAGCCCATTTGTCTCTGTACATATTCAGACATTATCCATTATTTTCCTGTCCAGTTGTATTTGGCTCCGTTTCACTTTCTTAAGGTTTTAACTTTTATCTAGACCAATTTACTTAATGTGTACAATAATTTGAAATAATACTTAACAAAATTTAGATAGCAAAGTAAAAATGCTAAAAGGTTGAATTTTTTTAGTCAGAAATCATTTTCATTAATATGTCAAGATGGTGCTAAAAAGTACACATGCCGTGTGGTAATGTAGGCTACTTTTGATTTCCTATCAAGATATCGAATTTACTTTACAAGAATATATTCTCTCTACTCCATATATATAAATGAGATGAAAGAAACTCTTTAGATTCCTTAAGTTTTTCTCATTGCTGCACTGTTAGTTCTTTTGTTCAGCGACAATTGCCAGATGAGCAATCACATAGTCCCTTTGATAAGCATGCTTAAGTTTAATTTCAGTTTCCACACCATATGTTGAACTAAATTGTTTCCAGTTACAATTTCCAACAATAATACCAATAAATCTTGTAAAATCTATCTTTTCCCTTCAATAATACCTTTTCTTAGTGCTATTCAGTTACCTCATTCAACTACTGTCCATTTCTAGATGTTCTGTATTTAGAAACTATCACCTCTTTTTTGCCTTTTTTATTGACAAAAAAAAAATTCACCTTTTTATGTACAGCATCACCTTATATGCAAATCTCCATATTCATTTTCATGTCAAGGCCAATACATCTAATCTCCTTACTCCTCCAGTGTAGGGGGCTATATTTTCTCCCCATCAAATGGTTGATTTCAAGGACTTTCTCTTCTCTCTTTAGACAAGTATGGGATCTTCAACCCGCTTAACATTTGTTCTAAATTTGCAATCCCCTATTGCAATATATTGACAATATGCAGTTAATTTTTTATTTTAAAAAAAAAAAAAAATTCTGCAAAGGATTGCTCATTGCTCATGGAACTACTCTTTGGACCATATTTAAATCCTTTTCCCGTATGTATATATTTTATTTTCTATGAGTTTAATATAGTATAAAGCTATGATGGAGTTGCATGCCAAATACAAAGACTTGAGTATTTATGCTCCCCATTGGTGTGACATTAGCATCAGAGGAACAAACAACAGACATGAGAGTCATGTCTTATAGTTGGACACAGTGTTTTGAAAATAAGGGAATATGACACAAGCTAGACAGGATATTATAGTTTTGAAGTATTGTATGATGCATGTTAATTCCTTCAAAAGTTATGCTTTCTTTTTGTGGAGGATCTGAGCAACAGAGATTAAAAAAAAATATTTAAGTTATTAAAAAAATACAAAAAGAAATATGAAATGAATCCACAAGTCTAGTAAAGCATCCTAATCGCACCAAATGCTGAGTTATCAACATATAGCAAAATACAAAGGTCTGCTTCTTGGCTATGTTAAAAAGAATGGCTTCATCTCTTGGCTAATTGGTACTTAGATGCATCTCCTCATAAACGTCTGTGGTTGACATAGGTTAATAGTATTTATTTAATTAAGGTGAGGGAAAAAGAAAAGAGATTTCTTACCTGTACCAATATGGTTGTATGCTGATTAGTATTGATTCTTTAGTTGCAGTAGAGGTTGTTACACCAATATTCTACTGTGAAACAGGATGCCAACTTTAAATAATTCACCGCTGATTTGGTTTCTTTAGGTTCTGGGTTTAATGTTTCATCCTAAATCTGCTTATATCTTCATTAGCGTAAAGAGGATGAAGGAATTATGTGATGCAAGGTGACATTTTCTCGTTGATGATCTCTTTTTGACAGCTTTCATTTGCTTATAGGACCATAGCAGCGACCCCAGCATAACTCATTTTCTTTTTCTGATGTTGGACCATCTAGACTCTGCTTCACACATGAACTCGTGTGATGTAAGCATATTTGAGACACAATGTGAAATTGCAATGTGATTTATCCAATAGATCTACCTGATTCACCAAGTAATGTAACATACAAGATTCACGGTTGAACTGTCTATCTGATGAGCAGGTACTTGTACAGAGGTTTGTCTACTGGAGACCGCCCAACATGTGACCAATGTCTAAGGATCCATGAAAAACTAACAGAAAAAGCTGGTTTGGGATGCATACTGCGTTGTCTTGCTGACACTGTGAATACTGTGTGACTAATACGCTGG--G-------TACTGTAGCAATTTGTATATGTCTTATCTTTGCTTTCTGATTGAATATTGATGTTGAGATTGAGTTTAGCCTATTTTCAAAGGGCTGATTCCTCTCCTTTAGTCGTATGTATTCTTCGCGACATATAACATATGAACTGTACCAAGGCAATTTGAGATTTCTCCCATCCTTTAGTGCATTTTGTGACTCTTGATACCGATGTTGTTGGTTGCATCTGAGAGTAGCAGTAGCCTACCTATCGATGAGCAGTGGGAATTAACCAAGTACTTTCTTCGTATTTGCCTATCAATGAGAGCATGCAAATAAGATATAGTAATAAAGCTTGAATCTCAAATGATACAAGAAAAAAAAAA</genome_strand>
        <mrna_strand>TTAAAGATCAAAATTTGAAGCATCCAAAA-ACACTCTCAATAAAGAT-CCCTAAAGCTGATTGCTTGTGCAATT--GG-GGCTCAAGGTTTTAGGAGCTGTCTACAAATGGCTGAGATTGTAGAAGCAGATAATTACGAAGGCATAATCACAAGAATCGAGCACAAGTCCCGCAAGATCGAAAGTTTACTCAAACA..............................................................................................................................GTATAAACCAGTGGAAGCTCTGAAAACAGCTCTAGAAGGATCACCTCCCAAAACCAAGGATGAAAGATGCAAG........................................................................................................................TCTGCTAATTGGATAGTGGTGCATAGGGCTATAATGGCTAACAAGGATGTGGATAGCTTGTTCTCTGCATTGGATCCTGAGTACTATGATATTCTCATGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGTACAGAGGTTTGTCTACTGGAGACCGCCCAACATGTGACCAATGTCTAAGGATCCATGAAAAACTAACAGAAAAAGCTGGTTTGGGATGCATACTGCGTTGTCTTGCTGACACTGTGAATACTGTGTGACTAATACGCTGGATGAACACAATACTGTAGCAATCTGTACATGTCTTGTCTTTGCATTTCGATTGAATATTGATGTTGAGATTGAGTTTAGCCTATTTTCAAAGGGCTGCTTCCTCTCCTTTAGTCGTCTGTATTCTTCGCGACATATAACATATGAACTGTACCAAGGCAATTTGAGATTTCTGCCATCCTTTAGTGC......................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615142" ref_strand="+" ref_description="SGN-E615142 [64937]">
      <seq>aatcatcaaagatcaaaatttgaagcatccaaaaacactctcaataaagatccctaaagctgattgcttgtgcaattggggctcaaggttttaggagctgtctacaaatggctgagattgtagaagcagataattacgaaggcataatcacaagaatcgagcacaagtcccgcaagatcgaaagtttactcaaacagtataaaccagtggaagctctgaaaacagctctagaaggatcacctcccaaaaccaaggatgaaagatgcaagtctgctaattggatagtggtgcatagggctataatggctaacaaggatgtggatagcttgttctctgcattggatcctgagtactatgatattctcatgaagtacttgtacagaggtttgtctactggagaccgcccaacatgtgaccaatgtctaaggatccatgaaaaactaacagaaaaagctggtttgggatgcatactgcgttgtcttgctgacactgtgaatactgtgtgactaatacgctggatgaacacaatactgtagcaatctgtacatgtcttgtctttgcatttcgattgaatattgatgttgagattgagtttagcctattttcaaagggctgcttcctctcctttagtcgtctgtattcttcgcgacatataacatatgaactgtaccaaaggcaatttgagatttctggcatccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="62826" stop="56875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62526" g_stop="62327" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62326" i_stop="62201" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62200" g_stop="62128" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="269" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62127" i_stop="62008" i_length="120">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62007" g_stop="61907" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="370" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61906" i_stop="57496" i_length="4411">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57495" g_stop="57175" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="701" r_length="331" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E615142" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62526" e_stop="62327"/>
          <exon e_start="62200" e_stop="62128"/>
          <exon e_start="62007" e_stop="61907"/>
          <exon e_start="57495" e_stop="57175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATCGAGGACCAAAATTTGAAGCATCCAAAAAACACTCTCAATAAAAATCCCCTAAAGCTGATTGCTTGTGCAATTGAGGAGGCTCAAGGTTTT-GGAGCTGTCTACAAATGGCTGAGATTGTCGAAGCAGATAATTACGAAGGCATAATCACAAGAATCGAGCACAAGTCCCGCAAGATCGAAAGTTTACTCAAACAGTACACAAATTTTCTACCCTTTATAAAGTTTCAATTTTTCCTTTTTCATATCTGCATAAAAACAGAACCCCACTTCTGTAATTGTTTAATAATGAATACCCATTTGTGATTTTGGTTATTTGTTAGGTATAAACCAGTGGAAGCTCTGAAAACAGCTCTAGAAGGATCACCTCCTAAGACCAAGGATGAAAGATGCAAGGTTCAATCTTTTTGCTCATGGCTTTTGTAAAAGTATGTTTTTTTTAATTAGAATATGAGTCTACTCACAGCTTGTGAGTTGACAGTTTTCTTTTTTTTTTGTGTGTGTTTGTTTTTGCAGTCTGCTAATTGGATAGTGGTGCATAGGGCTATAATGGCTATCAAGGATGTGGATAGCTTGTTCTCTGCATTGGATCCTGAGTATTATGATATTCTCATGAAGTAAGTTCATTTTTTCCCCTAATTATTATATGTATTGAGGCCTAGATGTGAATCCTGTCCATAGAAATTTGTTATGGTGGTATGATTCGAGTACTATATCTCCGATGCTTCATTATTGCCTACTGGAATATAGAATGTAAATGGCAAGATCATGTGAATTGTGTGAAATCAGTGATTTTATTTACTTGAGGGCTTTGATGCATTTTTGACTGATTGAGATTTGGACAAAGGGACTCCACTTAATTATCTATACTTGTTTAGCAATCCTCAAAATATTATTGTTCAGGCTCTGGTGCTGCTGTTATGCATACATTAATGGGAATGTGATGCAAGGCTTGTAATCCCATCTTCACAAAGATATTTAGAACTTTAACATTTCAGTTGAGTTACAAAAATTGATGCAAGGAAGTGGAATTTAAAGAAATCTAAATCTGGCAGAGAAGTATCCGACAATGATCTTTTGAAATTGAACCATCTGATGGAAATCAGAGAAGGTTTTATTGAAGTTCCAGAGCTTGTCTTTTCAGGAAATAGCTGACAAACTCTTTGAGCTGATGGTGTTGCAATGCATTACTTCGTGCAGTTAAGTATATATATAATTAATTTTAAGATCAAGAAGAAAGTGCTGCTCTATGATTAAATAGACAAATAATGTACTAGGCCAGTTTGCGTATAACAACCAGTTTAGAGTGATAAACATGTTCAAGTAGAAATAAGCCAGGACAGAATATCCTAGTGATAAAATCCTTATACCTCCAGTTTTGATGTCGGGGACTCGGGGTTTGAGTCACCAATGGAAGAAAAATGGAAAAAGCCACACTGTTGGAATCCTAGGTTCAGGAACCTTGGGGATGGGGTTTACCATACTCAGACAAGAAAAACAGTTAAGTAGAATAATCGATTGAACAATCTTTTAAAGCTCTTACATTGAGTATCATGGCCTGAAAATCATATATTTTGAGATTGCACATTCTTATATATATATATTATGTTTATTTACTTTAGGTTAAAATGGATTTGAGATGGGTCATGAAATCTGTTGACAATGAAATACTTCGTTAAGATTTTTGAAGAACTTTAATCGGACATTTTGGTAAATGCCAACAATATGCTTTTTCAAATTTAATTGACAACATGCAAACATTTTTTGACCACAGCTCAGGTTTTTTAATGTGCAACAACTAGCTAAACTTGGTATTGTTTTACATCTCAATGATACAGCTTTGAAGAAATGTTTTTTTAAATGAATGCACCATGTTGGTAGGTGAGAATGTCTTTTCATTGATTTTATACTATAAGCAACCAGGACTGGTGTAATACTTGCTAGTTGCTTGATCGGGTATAAATCTCAGTCCTGAAATCTGAGGTGAGACTACATACTTGAACACTAAAATAAAGTTTATGGAATATTGACAAGAAGGGTCTGAAAGTTCATTTGGAATAACTTGGGTTGGTATGTATATCTGGCGCTAAGATGAAGATATTTCAACTTAAGAACCAAGGGACTTCTCTTACTTTTATCTATATGTTGTTTCTTTACAAAATTTTACCTTCAACTTATGATAAAGGGCTTAATTCAGGGGTTGGAAGGGGTGAAGTTCCTAATTTCTGGAAACATCTGTAGATAAGAACTTGGTAAAAAAAAAAAAGCAAAGTTGGCCCTACATTTAAATGTGTAGCATATTTACAACTCTCATATATTAGCTTAAAATATTGGCCGAGGAGATTGAGAATAGAGAGATATAGAGCTTTAACTTGCTACTGGGATGACTTGGAGAAATTTGGCATGATCAGTCAAGATAGGTCTGACCTATGTGGTGATCATGTTTGGGTACTTTTTATTGGTTTTGTACGGGCTTAAATAAGTTGAGTTAGTACGGAAGTCAGGTTTTGGTATTATAATCTTGAACTTGAGATGCTCAGGTTGGTATAGATTTTTCAGTAAGGCTAGACACCTTCCCTGTTGTAGCTTAGAATATTATGGGATAGCTCGCTGCTGCAAATCAAGGAAGAAACATTGAACGCACAGTCTCAGAGATTCAATCCGTTATGCCACTGTTCTAAATGGCGGCAATTATCGATATTGAGAAATGAGAGAGACTTAAATGGTAGGCAAGTAGACCATTTACATACTGCTCCGCACTTAGAAGTCAGTCCCCGCTGGTTCAAATTGTCTCTTAGGATAGATGTGACTGATAAGTCCTCGTTTTTCTTTCCATTTATCAGAAAGAAAAGGACCTTGTCTTTCCTTTTTGTTTTGTGAAACAATTGAACTATTTTCTTCTATCAAAATATTGTATAGCCTTCTTGCTTTGAGATACAAATTTCTCTTGATATGTACATTCTGCACTGTAGTAAGCATACTGTAGTAGGAGATGCATAAGCCCATTTGTCTCTGTACATATTCAGACATTATCCATTATTTTCCTGTCCAGTTGTATTTGGCTCCGTTTCACTTTCTTAAGGTTTTAACTTTTATCTAGACCAATTTACTTAATGTGTACAATAATTTGAAATAATACTTAACAAAATTTAGATAGCAAAGTAAAAATGCTAAAAGGTTGAATTTTTTTAGTCAGAAATCATTTTCATTAATATGTCAAGATGGTGCTAAAAAGTACACATGCCGTGTGGTAATGTAGGCTACTTTTGATTTCCTATCAAGATATCGAATTTACTTTACAAGAATATATTCTCTCTACTCCATATATATAAATGAGATGAAAGAAACTCTTTAGATTCCTTAAGTTTTTCTCATTGCTGCACTGTTAGTTCTTTTGTTCAGCGACAATTGCCAGATGAGCAATCACATAGTCCCTTTGATAAGCATGCTTAAGTTTAATTTCAGTTTCCACACCATATGTTGAACTAAATTGTTTCCAGTTACAATTTCCAACAATAATACCAATAAATCTTGTAAAATCTATCTTTTCCCTTCAATAATACCTTTTCTTAGTGCTATTCAGTTACCTCATTCAACTACTGTCCATTTCTAGATGTTCTGTATTTAGAAACTATCACCTCTTTTTTGCCTTTTTTATTGACAAAAAAAAAATTCACCTTTTTATGTACAGCATCACCTTATATGCAAATCTCCATATTCATTTTCATGTCAAGGCCAATACATCTAATCTCCTTACTCCTCCAGTGTAGGGGGCTATATTTTCTCCCCATCAAATGGTTGATTTCAAGGACTTTCTCTTCTCTCTTTAGACAAGTATGGGATCTTCAACCCGCTTAACATTTGTTCTAAATTTGCAATCCCCTATTGCAATATATTGACAATATGCAGTTAATTTTTTATTTTAAAAAAAAAAAAAAATTCTGCAAAGGATTGCTCATTGCTCATGGAACTACTCTTTGGACCATATTTAAATCCTTTTCCCGTATGTATATATTTTATTTTCTATGAGTTTAATATAGTATAAAGCTATGATGGAGTTGCATGCCAAATACAAAGACTTGAGTATTTATGCTCCCCATTGGTGTGACATTAGCATCAGAGGAACAAACAACAGACATGAGAGTCATGTCTTATAGTTGGACACAGTGTTTTGAAAATAAGGGAATATGACACAAGCTAGACAGGATATTATAGTTTTGAAGTATTGTATGATGCATGTTAATTCCTTCAAAAGTTATGCTTTCTTTTTGTGGAGGATCTGAGCAACAGAGATTAAAAAAAAATATTTAAGTTATTAAAAAAATACAAAAAGAAATATGAAATGAATCCACAAGTCTAGTAAAGCATCCTAATCGCACCAAATGCTGAGTTATCAACATATAGCAAAATACAAAGGTCTGCTTCTTGGCTATGTTAAAAAGAATGGCTTCATCTCTTGGCTAATTGGTACTTAGATGCATCTCCTCATAAACGTCTGTGGTTGACATAGGTTAATAGTATTTATTTAATTAAGGTGAGGGAAAAAGAAAAGAGATTTCTTACCTGTACCAATATGGTTGTATGCTGATTAGTATTGATTCTTTAGTTGCAGTAGAGGTTGTTACACCAATATTCTACTGTGAAACAGGATGCCAACTTTAAATAATTCACCGCTGATTTGGTTTCTTTAGGTTCTGGGTTTAATGTTTCATCCTAAATCTGCTTATATCTTCATTAGCGTAAAGAGGATGAAGGAATTATGTGATGCAAGGTGACATTTTCTCGTTGATGATCTCTTTTTGACAGCTTTCATTTGCTTATAGGACCATAGCAGCGACCCCAGCATAACTCATTTTCTTTTTCTGATGTTGGACCATCTAGACTCTGCTTCACACATGAACTCGTGTGATGTAAGCATATTTGAGACACAATGTGAAATTGCAATGTGATTTATCCAATAGATCTACCTGATTCACCAAGTAATGTAACATACAAGATTCACGGTTGAACTGTCTATCTGATGAGCAGGTACTTGTACAGAGGTTTGTCTACTGGAGACCGCCCAACATGTGACCAATGTCTAAGGATCCATGAAAAACTAACAGAAAAAGCTGGTTTGGGATGCATACTGCGTTGTCTTGCTGACACTGTGAATACTGTGTGACTAATACGCTGG--G-------TACTGTAGCAATTTGTATATGTCTTATCTTTGCTTTCTGATTGAATATTGATGTTGAGATTGAGTTTAGCCTATTTTCAAAGGGCTGATTCCTCTCCTTTAGTCGTATGTATTCTTCGCGACATATAACATATGAACTGTACC-AAGGCAATTTGAGATTTCTCCCATCCTTT</genome_strand>
        <mrna_strand>AATCATCAAAGATCAAAATTTGAAGCATCC-AAAAACACTCTCAATAAAGAT-CCCTAAAGCTGATTGCTTGTGCAATT--GG-GGCTCAAGGTTTTAGGAGCTGTCTACAAATGGCTGAGATTGTAGAAGCAGATAATTACGAAGGCATAATCACAAGAATCGAGCACAAGTCCCGCAAGATCGAAAGTTTACTCAAACA..............................................................................................................................GTATAAACCAGTGGAAGCTCTGAAAACAGCTCTAGAAGGATCACCTCCCAAAACCAAGGATGAAAGATGCAAG........................................................................................................................TCTGCTAATTGGATAGTGGTGCATAGGGCTATAATGGCTAACAAGGATGTGGATAGCTTGTTCTCTGCATTGGATCCTGAGTACTATGATATTCTCATGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGTACAGAGGTTTGTCTACTGGAGACCGCCCAACATGTGACCAATGTCTAAGGATCCATGAAAAACTAACAGAAAAAGCTGGTTTGGGATGCATACTGCGTTGTCTTGCTGACACTGTGAATACTGTGTGACTAATACGCTGGATGAACACAATACTGTAGCAATCTGTACATGTCTTGTCTTTGCATTTCGATTGAATATTGATGTTGAGATTGAGTTTAGCCTATTTTCAAAGGGCTGCTTCCTCTCCTTTAGTCGTCTGTATTCTTCGCGACATATAACATATGAACTGTACCAAAGGCAATTTGAGATTTCTGGCATCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612615" ref_strand="+" ref_description="SGN-E612615 [62380]">
      <seq>atttaattatttgggtgaagaggggttgtatttgtaagtttaagaaactaagaagaatgtaactgcaatttagccatttatataccaagtatcaaaatgttgtaaaaaatcaagattctcactcctgttggtaaatcatcaaagatcaaaatttgaagcatccaaaaacactctcaataaagatccctaaagctgattgcttgtgcaattggggctcaaggttttaggagctgtctacaaatggctgagattgtagaagcagataattacgaaggcataatcacaagaatcgagcacaagtcccgcaagatcgaaagtttactcaaacagtataaaccagtggaagctctgaaaacagctctagaaggatcacctcccaaaaccaaggatgaaagatgcaagtctgctaattggatagtggtgcatagggctataatggctaacaaggatgtggatagcttgttctctgcattggatcctgagtactatgatattctcatgaagtacttgtacagaggtttgtctactggagaaccgccaacatgtgaccaatgtctaaggatccatgaaaaactaacagaaaaagctggtttgggatgcatactgcgttgtcttgctgacactgtgaatactgtgtgactaatacgctggatgaacacaatactgtagcaatctgtacatgtcttgtctttgcatttcgattgaatatgatgttgagattgagtttagcctattttcaaaggggcttggttcctctcctttagtcgtctgtattcttcgcgacatataacatatgaactgtaccaagggcaatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="62963" stop="56892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62659" g_stop="62327" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="329" r_length="308" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62326" i_stop="62201" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62200" g_stop="62128" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="402" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62127" i_stop="62008" i_length="120">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62007" g_stop="61907" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="503" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61906" i_stop="57496" i_length="4411">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57495" g_stop="57192" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="818" r_length="315" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E612615" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62659" e_stop="62327"/>
          <exon e_start="62200" e_stop="62128"/>
          <exon e_start="62007" e_stop="61907"/>
          <exon e_start="57495" e_stop="57192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTTGTATTTGTAAGTTTAAGAAACTAAGAGGAATGTAACTGCAATTTACTCATTTTATATACCAAGTATCAAAATGTTGTAAAAAAACAAACAAACAAAAAAGAATCAAGATTCTCACTCCTGTTGGTAAAATCATCGAGGACCAAAATTTGAAGCATCCAAAAAACACTCTCAATAAAAATCCCCTAAAGCTGATTGCTTGTGCAATTGAGGAGGCTCAAGGTTTT-GGAGCTGTCTACAAATGGCTGAGATTGTCGAAGCAGATAATTACGAAGGCATAATCACAAGAATCGAGCACAAGTCCCGCAAGATCGAAAGTTTACTCAAACAGTACACAAATTTTCTACCCTTTATAAAGTTTCAATTTTTCCTTTTTCATATCTGCATAAAAACAGAACCCCACTTCTGTAATTGTTTAATAATGAATACCCATTTGTGATTTTGGTTATTTGTTAGGTATAAACCAGTGGAAGCTCTGAAAACAGCTCTAGAAGGATCACCTCCTAAGACCAAGGATGAAAGATGCAAGGTTCAATCTTTTTGCTCATGGCTTTTGTAAAAGTATGTTTTTTTTAATTAGAATATGAGTCTACTCACAGCTTGTGAGTTGACAGTTTTCTTTTTTTTTTGTGTGTGTTTGTTTTTGCAGTCTGCTAATTGGATAGTGGTGCATAGGGCTATAATGGCTATCAAGGATGTGGATAGCTTGTTCTCTGCATTGGATCCTGAGTATTATGATATTCTCATGAAGTAAGTTCATTTTTTCCCCTAATTATTATATGTATTGAGGCCTAGATGTGAATCCTGTCCATAGAAATTTGTTATGGTGGTATGATTCGAGTACTATATCTCCGATGCTTCATTATTGCCTACTGGAATATAGAATGTAAATGGCAAGATCATGTGAATTGTGTGAAATCAGTGATTTTATTTACTTGAGGGCTTTGATGCATTTTTGACTGATTGAGATTTGGACAAAGGGACTCCACTTAATTATCTATACTTGTTTAGCAATCCTCAAAATATTATTGTTCAGGCTCTGGTGCTGCTGTTATGCATACATTAATGGGAATGTGATGCAAGGCTTGTAATCCCATCTTCACAAAGATATTTAGAACTTTAACATTTCAGTTGAGTTACAAAAATTGATGCAAGGAAGTGGAATTTAAAGAAATCTAAATCTGGCAGAGAAGTATCCGACAATGATCTTTTGAAATTGAACCATCTGATGGAAATCAGAGAAGGTTTTATTGAAGTTCCAGAGCTTGTCTTTTCAGGAAATAGCTGACAAACTCTTTGAGCTGATGGTGTTGCAATGCATTACTTCGTGCAGTTAAGTATATATATAATTAATTTTAAGATCAAGAAGAAAGTGCTGCTCTATGATTAAATAGACAAATAATGTACTAGGCCAGTTTGCGTATAACAACCAGTTTAGAGTGATAAACATGTTCAAGTAGAAATAAGCCAGGACAGAATATCCTAGTGATAAAATCCTTATACCTCCAGTTTTGATGTCGGGGACTCGGGGTTTGAGTCACCAATGGAAGAAAAATGGAAAAAGCCACACTGTTGGAATCCTAGGTTCAGGAACCTTGGGGATGGGGTTTACCATACTCAGACAAGAAAAACAGTTAAGTAGAATAATCGATTGAACAATCTTTTAAAGCTCTTACATTGAGTATCATGGCCTGAAAATCATATATTTTGAGATTGCACATTCTTATATATATATATTATGTTTATTTACTTTAGGTTAAAATGGATTTGAGATGGGTCATGAAATCTGTTGACAATGAAATACTTCGTTAAGATTTTTGAAGAACTTTAATCGGACATTTTGGTAAATGCCAACAATATGCTTTTTCAAATTTAATTGACAACATGCAAACATTTTTTGACCACAGCTCAGGTTTTTTAATGTGCAACAACTAGCTAAACTTGGTATTGTTTTACATCTCAATGATACAGCTTTGAAGAAATGTTTTTTTAAATGAATGCACCATGTTGGTAGGTGAGAATGTCTTTTCATTGATTTTATACTATAAGCAACCAGGACTGGTGTAATACTTGCTAGTTGCTTGATCGGGTATAAATCTCAGTCCTGAAATCTGAGGTGAGACTACATACTTGAACACTAAAATAAAGTTTATGGAATATTGACAAGAAGGGTCTGAAAGTTCATTTGGAATAACTTGGGTTGGTATGTATATCTGGCGCTAAGATGAAGATATTTCAACTTAAGAACCAAGGGACTTCTCTTACTTTTATCTATATGTTGTTTCTTTACAAAATTTTACCTTCAACTTATGATAAAGGGCTTAATTCAGGGGTTGGAAGGGGTGAAGTTCCTAATTTCTGGAAACATCTGTAGATAAGAACTTGGTAAAAAAAAAAAAGCAAAGTTGGCCCTACATTTAAATGTGTAGCATATTTACAACTCTCATATATTAGCTTAAAATATTGGCCGAGGAGATTGAGAATAGAGAGATATAGAGCTTTAACTTGCTACTGGGATGACTTGGAGAAATTTGGCATGATCAGTCAAGATAGGTCTGACCTATGTGGTGATCATGTTTGGGTACTTTTTATTGGTTTTGTACGGGCTTAAATAAGTTGAGTTAGTACGGAAGTCAGGTTTTGGTATTATAATCTTGAACTTGAGATGCTCAGGTTGGTATAGATTTTTCAGTAAGGCTAGACACCTTCCCTGTTGTAGCTTAGAATATTATGGGATAGCTCGCTGCTGCAAATCAAGGAAGAAACATTGAACGCACAGTCTCAGAGATTCAATCCGTTATGCCACTGTTCTAAATGGCGGCAATTATCGATATTGAGAAATGAGAGAGACTTAAATGGTAGGCAAGTAGACCATTTACATACTGCTCCGCACTTAGAAGTCAGTCCCCGCTGGTTCAAATTGTCTCTTAGGATAGATGTGACTGATAAGTCCTCGTTTTTCTTTCCATTTATCAGAAAGAAAAGGACCTTGTCTTTCCTTTTTGTTTTGTGAAACAATTGAACTATTTTCTTCTATCAAAATATTGTATAGCCTTCTTGCTTTGAGATACAAATTTCTCTTGATATGTACATTCTGCACTGTAGTAAGCATACTGTAGTAGGAGATGCATAAGCCCATTTGTCTCTGTACATATTCAGACATTATCCATTATTTTCCTGTCCAGTTGTATTTGGCTCCGTTTCACTTTCTTAAGGTTTTAACTTTTATCTAGACCAATTTACTTAATGTGTACAATAATTTGAAATAATACTTAACAAAATTTAGATAGCAAAGTAAAAATGCTAAAAGGTTGAATTTTTTTAGTCAGAAATCATTTTCATTAATATGTCAAGATGGTGCTAAAAAGTACACATGCCGTGTGGTAATGTAGGCTACTTTTGATTTCCTATCAAGATATCGAATTTACTTTACAAGAATATATTCTCTCTACTCCATATATATAAATGAGATGAAAGAAACTCTTTAGATTCCTTAAGTTTTTCTCATTGCTGCACTGTTAGTTCTTTTGTTCAGCGACAATTGCCAGATGAGCAATCACATAGTCCCTTTGATAAGCATGCTTAAGTTTAATTTCAGTTTCCACACCATATGTTGAACTAAATTGTTTCCAGTTACAATTTCCAACAATAATACCAATAAATCTTGTAAAATCTATCTTTTCCCTTCAATAATACCTTTTCTTAGTGCTATTCAGTTACCTCATTCAACTACTGTCCATTTCTAGATGTTCTGTATTTAGAAACTATCACCTCTTTTTTGCCTTTTTTATTGACAAAAAAAAAATTCACCTTTTTATGTACAGCATCACCTTATATGCAAATCTCCATATTCATTTTCATGTCAAGGCCAATACATCTAATCTCCTTACTCCTCCAGTGTAGGGGGCTATATTTTCTCCCCATCAAATGGTTGATTTCAAGGACTTTCTCTTCTCTCTTTAGACAAGTATGGGATCTTCAACCCGCTTAACATTTGTTCTAAATTTGCAATCCCCTATTGCAATATATTGACAATATGCAGTTAATTTTTTATTTTAAAAAAAAAAAAAAATTCTGCAAAGGATTGCTCATTGCTCATGGAACTACTCTTTGGACCATATTTAAATCCTTTTCCCGTATGTATATATTTTATTTTCTATGAGTTTAATATAGTATAAAGCTATGATGGAGTTGCATGCCAAATACAAAGACTTGAGTATTTATGCTCCCCATTGGTGTGACATTAGCATCAGAGGAACAAACAACAGACATGAGAGTCATGTCTTATAGTTGGACACAGTGTTTTGAAAATAAGGGAATATGACACAAGCTAGACAGGATATTATAGTTTTGAAGTATTGTATGATGCATGTTAATTCCTTCAAAAGTTATGCTTTCTTTTTGTGGAGGATCTGAGCAACAGAGATTAAAAAAAAATATTTAAGTTATTAAAAAAATACAAAAAGAAATATGAAATGAATCCACAAGTCTAGTAAAGCATCCTAATCGCACCAAATGCTGAGTTATCAACATATAGCAAAATACAAAGGTCTGCTTCTTGGCTATGTTAAAAAGAATGGCTTCATCTCTTGGCTAATTGGTACTTAGATGCATCTCCTCATAAACGTCTGTGGTTGACATAGGTTAATAGTATTTATTTAATTAAGGTGAGGGAAAAAGAAAAGAGATTTCTTACCTGTACCAATATGGTTGTATGCTGATTAGTATTGATTCTTTAGTTGCAGTAGAGGTTGTTACACCAATATTCTACTGTGAAACAGGATGCCAACTTTAAATAATTCACCGCTGATTTGGTTTCTTTAGGTTCTGGGTTTAATGTTTCATCCTAAATCTGCTTATATCTTCATTAGCGTAAAGAGGATGAAGGAATTATGTGATGCAAGGTGACATTTTCTCGTTGATGATCTCTTTTTGACAGCTTTCATTTGCTTATAGGACCATAGCAGCGACCCCAGCATAACTCATTTTCTTTTTCTGATGTTGGACCATCTAGACTCTGCTTCACACATGAACTCGTGTGATGTAAGCATATTTGAGACACAATGTGAAATTGCAATGTGATTTATCCAATAGATCTACCTGATTCACCAAGTAATGTAACATACAAGATTCACGGTTGAACTGTCTATCTGATGAGCAGGTACTTGTACAGAGGTTTGTCTACTGGAGACCGCCCAACATGTGACCAATGTCTAAGGATCCATGAAAAACTAACAGAAAAAGCTGGTTTGGGATGCATACTGCGTTGTCTTGCTGACACTGTGAATACTGTGTGACTAATACGCTGG--G-------TACTGTAGCAATTTGTATATGTCTTATCTTTGCTTTCTGATTGAATATTGATGTTGAGATTGAGTTTAGCCTATTTTCAAA-GGGC-TGATTCCTCTCCTTTAGTCGTATGTATTCTTCGCGACATATAACATATGAACTGTACCAA-GGCAATTTGA</genome_strand>
        <mrna_strand>GGGGTTGTATTTGTAAGTTTAAGAAACTAAGAAGAATGTAACTGCAATTTAGCCA-TTTATATACCAAGTATCAAAATGTTGT---A-AA-AAA--------------TCAAGATTCTCACTCCTGTTGGTAAA-TCATCAAAGATCAAAATTTGAAGCATCC-AAAAACACTCTCAATAAAGAT-CCCTAAAGCTGATTGCTTGTGCAATT--GG-GGCTCAAGGTTTTAGGAGCTGTCTACAAATGGCTGAGATTGTAGAAGCAGATAATTACGAAGGCATAATCACAAGAATCGAGCACAAGTCCCGCAAGATCGAAAGTTTACTCAAACA..............................................................................................................................GTATAAACCAGTGGAAGCTCTGAAAACAGCTCTAGAAGGATCACCTCCCAAAACCAAGGATGAAAGATGCAAG........................................................................................................................TCTGCTAATTGGATAGTGGTGCATAGGGCTATAATGGCTAACAAGGATGTGGATAGCTTGTTCTCTGCATTGGATCCTGAGTACTATGATATTCTCATGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGTACAGAGGTTTGTCTACTGGAGAACCGCCAACATGTGACCAATGTCTAAGGATCCATGAAAAACTAACAGAAAAAGCTGGTTTGGGATGCATACTGCGTTGTCTTGCTGACACTGTGAATACTGTGTGACTAATACGCTGGATGAACACAATACTGTAGCAATCTGTACATGTCTTGTCTTTGCATTTCGATTGAATA-TGATGTTGAGATTGAGTTTAGCCTATTTTCAAAGGGGCTTGGTTCCTCTCCTTTAGTCGTCTGTATTCTTCGCGACATATAACATATGAACTGTACCAAGGGCAATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E623270" ref_strand="+" ref_description="SGN-E623270 [88360]">
      <seq>aaactaagaagaatgtaactgcaatttagccatttatataccaagtatcaaaatgttgtaaaaaatcaagattctcactcctgttggtaaatcatcaaagatcaaaatttgaagcatccaaaaacactctcaataaagatccctaaagctgattgcttgtgcaattggggctcaaggttttaggagctgtctacaaatggctgagattgtagaagcagataattacgaaggcataatcacaagaatcgagcacaagtcccgcaagatcgaaagtttactcaaacagtataaaccagtggaagctctgaaaacagctctagaaggatcacctcccaaaaccaaggatgaaagatgcaagtctgctaattggatagtggtgcatagggctataatggctaacaaggatgtggatagcttgttctctgcattggatcctgagtactatgatattctcatgaagtacttgtacagaggtttgtctactggagaccgcccaacatgtgaccaatgtctaaggatccatgaaaaactaacagaaaaagctggtttgggatgcatactgcgttgtcttgctgacactgtgaatactgtgtgactaatacgctggatgaacacaatactgtagcaatctgtacatgtcttgtctttgcatttcgattgaatattgatgttgagattgagttagcctattttcaaagggctgcttctctccttagtcgtctgtattcttcggacatatacaatatgaactgtacaaggcaatttgagattctgccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="62936" stop="56881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62636" g_stop="62327" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62326" i_stop="62201" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62200" g_stop="62128" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="358" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62127" i_stop="62008" i_length="120">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62007" g_stop="61907" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="459" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61906" i_stop="57496" i_length="4411">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57495" g_stop="57206" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="754" r_length="295" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="777" polyA_stop="791"/>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E623270" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62636" e_stop="62327"/>
          <exon e_start="62200" e_stop="62128"/>
          <exon e_start="62007" e_stop="61907"/>
          <exon e_start="57495" e_stop="57206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAAGAGGAATGTAACTGCAATTTACTCATTTTATATACCAAGTATCAAAATGTTGTAAAAAAACAAACAAACAAAAAAGAATCAAGATTCTCACTCCTGTTGGTAAAATCATCGAGGACCAAAATTTGAAGCATCCAAAAAACACTCTCAATAAAAATCCCCTAAAGCTGATTGCTTGTGCAATTGAGGAGGCTCAAGGTTTT-GGAGCTGTCTACAAATGGCTGAGATTGTCGAAGCAGATAATTACGAAGGCATAATCACAAGAATCGAGCACAAGTCCCGCAAGATCGAAAGTTTACTCAAACAGTACACAAATTTTCTACCCTTTATAAAGTTTCAATTTTTCCTTTTTCATATCTGCATAAAAACAGAACCCCACTTCTGTAATTGTTTAATAATGAATACCCATTTGTGATTTTGGTTATTTGTTAGGTATAAACCAGTGGAAGCTCTGAAAACAGCTCTAGAAGGATCACCTCCTAAGACCAAGGATGAAAGATGCAAGGTTCAATCTTTTTGCTCATGGCTTTTGTAAAAGTATGTTTTTTTTAATTAGAATATGAGTCTACTCACAGCTTGTGAGTTGACAGTTTTCTTTTTTTTTTGTGTGTGTTTGTTTTTGCAGTCTGCTAATTGGATAGTGGTGCATAGGGCTATAATGGCTATCAAGGATGTGGATAGCTTGTTCTCTGCATTGGATCCTGAGTATTATGATATTCTCATGAAGTAAGTTCATTTTTTCCCCTAATTATTATATGTATTGAGGCCTAGATGTGAATCCTGTCCATAGAAATTTGTTATGGTGGTATGATTCGAGTACTATATCTCCGATGCTTCATTATTGCCTACTGGAATATAGAATGTAAATGGCAAGATCATGTGAATTGTGTGAAATCAGTGATTTTATTTACTTGAGGGCTTTGATGCATTTTTGACTGATTGAGATTTGGACAAAGGGACTCCACTTAATTATCTATACTTGTTTAGCAATCCTCAAAATATTATTGTTCAGGCTCTGGTGCTGCTGTTATGCATACATTAATGGGAATGTGATGCAAGGCTTGTAATCCCATCTTCACAAAGATATTTAGAACTTTAACATTTCAGTTGAGTTACAAAAATTGATGCAAGGAAGTGGAATTTAAAGAAATCTAAATCTGGCAGAGAAGTATCCGACAATGATCTTTTGAAATTGAACCATCTGATGGAAATCAGAGAAGGTTTTATTGAAGTTCCAGAGCTTGTCTTTTCAGGAAATAGCTGACAAACTCTTTGAGCTGATGGTGTTGCAATGCATTACTTCGTGCAGTTAAGTATATATATAATTAATTTTAAGATCAAGAAGAAAGTGCTGCTCTATGATTAAATAGACAAATAATGTACTAGGCCAGTTTGCGTATAACAACCAGTTTAGAGTGATAAACATGTTCAAGTAGAAATAAGCCAGGACAGAATATCCTAGTGATAAAATCCTTATACCTCCAGTTTTGATGTCGGGGACTCGGGGTTTGAGTCACCAATGGAAGAAAAATGGAAAAAGCCACACTGTTGGAATCCTAGGTTCAGGAACCTTGGGGATGGGGTTTACCATACTCAGACAAGAAAAACAGTTAAGTAGAATAATCGATTGAACAATCTTTTAAAGCTCTTACATTGAGTATCATGGCCTGAAAATCATATATTTTGAGATTGCACATTCTTATATATATATATTATGTTTATTTACTTTAGGTTAAAATGGATTTGAGATGGGTCATGAAATCTGTTGACAATGAAATACTTCGTTAAGATTTTTGAAGAACTTTAATCGGACATTTTGGTAAATGCCAACAATATGCTTTTTCAAATTTAATTGACAACATGCAAACATTTTTTGACCACAGCTCAGGTTTTTTAATGTGCAACAACTAGCTAAACTTGGTATTGTTTTACATCTCAATGATACAGCTTTGAAGAAATGTTTTTTTAAATGAATGCACCATGTTGGTAGGTGAGAATGTCTTTTCATTGATTTTATACTATAAGCAACCAGGACTGGTGTAATACTTGCTAGTTGCTTGATCGGGTATAAATCTCAGTCCTGAAATCTGAGGTGAGACTACATACTTGAACACTAAAATAAAGTTTATGGAATATTGACAAGAAGGGTCTGAAAGTTCATTTGGAATAACTTGGGTTGGTATGTATATCTGGCGCTAAGATGAAGATATTTCAACTTAAGAACCAAGGGACTTCTCTTACTTTTATCTATATGTTGTTTCTTTACAAAATTTTACCTTCAACTTATGATAAAGGGCTTAATTCAGGGGTTGGAAGGGGTGAAGTTCCTAATTTCTGGAAACATCTGTAGATAAGAACTTGGTAAAAAAAAAAAAGCAAAGTTGGCCCTACATTTAAATGTGTAGCATATTTACAACTCTCATATATTAGCTTAAAATATTGGCCGAGGAGATTGAGAATAGAGAGATATAGAGCTTTAACTTGCTACTGGGATGACTTGGAGAAATTTGGCATGATCAGTCAAGATAGGTCTGACCTATGTGGTGATCATGTTTGGGTACTTTTTATTGGTTTTGTACGGGCTTAAATAAGTTGAGTTAGTACGGAAGTCAGGTTTTGGTATTATAATCTTGAACTTGAGATGCTCAGGTTGGTATAGATTTTTCAGTAAGGCTAGACACCTTCCCTGTTGTAGCTTAGAATATTATGGGATAGCTCGCTGCTGCAAATCAAGGAAGAAACATTGAACGCACAGTCTCAGAGATTCAATCCGTTATGCCACTGTTCTAAATGGCGGCAATTATCGATATTGAGAAATGAGAGAGACTTAAATGGTAGGCAAGTAGACCATTTACATACTGCTCCGCACTTAGAAGTCAGTCCCCGCTGGTTCAAATTGTCTCTTAGGATAGATGTGACTGATAAGTCCTCGTTTTTCTTTCCATTTATCAGAAAGAAAAGGACCTTGTCTTTCCTTTTTGTTTTGTGAAACAATTGAACTATTTTCTTCTATCAAAATATTGTATAGCCTTCTTGCTTTGAGATACAAATTTCTCTTGATATGTACATTCTGCACTGTAGTAAGCATACTGTAGTAGGAGATGCATAAGCCCATTTGTCTCTGTACATATTCAGACATTATCCATTATTTTCCTGTCCAGTTGTATTTGGCTCCGTTTCACTTTCTTAAGGTTTTAACTTTTATCTAGACCAATTTACTTAATGTGTACAATAATTTGAAATAATACTTAACAAAATTTAGATAGCAAAGTAAAAATGCTAAAAGGTTGAATTTTTTTAGTCAGAAATCATTTTCATTAATATGTCAAGATGGTGCTAAAAAGTACACATGCCGTGTGGTAATGTAGGCTACTTTTGATTTCCTATCAAGATATCGAATTTACTTTACAAGAATATATTCTCTCTACTCCATATATATAAATGAGATGAAAGAAACTCTTTAGATTCCTTAAGTTTTTCTCATTGCTGCACTGTTAGTTCTTTTGTTCAGCGACAATTGCCAGATGAGCAATCACATAGTCCCTTTGATAAGCATGCTTAAGTTTAATTTCAGTTTCCACACCATATGTTGAACTAAATTGTTTCCAGTTACAATTTCCAACAATAATACCAATAAATCTTGTAAAATCTATCTTTTCCCTTCAATAATACCTTTTCTTAGTGCTATTCAGTTACCTCATTCAACTACTGTCCATTTCTAGATGTTCTGTATTTAGAAACTATCACCTCTTTTTTGCCTTTTTTATTGACAAAAAAAAAATTCACCTTTTTATGTACAGCATCACCTTATATGCAAATCTCCATATTCATTTTCATGTCAAGGCCAATACATCTAATCTCCTTACTCCTCCAGTGTAGGGGGCTATATTTTCTCCCCATCAAATGGTTGATTTCAAGGACTTTCTCTTCTCTCTTTAGACAAGTATGGGATCTTCAACCCGCTTAACATTTGTTCTAAATTTGCAATCCCCTATTGCAATATATTGACAATATGCAGTTAATTTTTTATTTTAAAAAAAAAAAAAAATTCTGCAAAGGATTGCTCATTGCTCATGGAACTACTCTTTGGACCATATTTAAATCCTTTTCCCGTATGTATATATTTTATTTTCTATGAGTTTAATATAGTATAAAGCTATGATGGAGTTGCATGCCAAATACAAAGACTTGAGTATTTATGCTCCCCATTGGTGTGACATTAGCATCAGAGGAACAAACAACAGACATGAGAGTCATGTCTTATAGTTGGACACAGTGTTTTGAAAATAAGGGAATATGACACAAGCTAGACAGGATATTATAGTTTTGAAGTATTGTATGATGCATGTTAATTCCTTCAAAAGTTATGCTTTCTTTTTGTGGAGGATCTGAGCAACAGAGATTAAAAAAAAATATTTAAGTTATTAAAAAAATACAAAAAGAAATATGAAATGAATCCACAAGTCTAGTAAAGCATCCTAATCGCACCAAATGCTGAGTTATCAACATATAGCAAAATACAAAGGTCTGCTTCTTGGCTATGTTAAAAAGAATGGCTTCATCTCTTGGCTAATTGGTACTTAGATGCATCTCCTCATAAACGTCTGTGGTTGACATAGGTTAATAGTATTTATTTAATTAAGGTGAGGGAAAAAGAAAAGAGATTTCTTACCTGTACCAATATGGTTGTATGCTGATTAGTATTGATTCTTTAGTTGCAGTAGAGGTTGTTACACCAATATTCTACTGTGAAACAGGATGCCAACTTTAAATAATTCACCGCTGATTTGGTTTCTTTAGGTTCTGGGTTTAATGTTTCATCCTAAATCTGCTTATATCTTCATTAGCGTAAAGAGGATGAAGGAATTATGTGATGCAAGGTGACATTTTCTCGTTGATGATCTCTTTTTGACAGCTTTCATTTGCTTATAGGACCATAGCAGCGACCCCAGCATAACTCATTTTCTTTTTCTGATGTTGGACCATCTAGACTCTGCTTCACACATGAACTCGTGTGATGTAAGCATATTTGAGACACAATGTGAAATTGCAATGTGATTTATCCAATAGATCTACCTGATTCACCAAGTAATGTAACATACAAGATTCACGGTTGAACTGTCTATCTGATGAGCAGGTACTTGTACAGAGGTTTGTCTACTGGAGACCGCCCAACATGTGACCAATGTCTAAGGATCCATGAAAAACTAACAGAAAAAGCTGGTTTGGGATGCATACTGCGTTGTCTTGCTGACACTGTGAATACTGTGTGACTAATACGCTGG--G-------TACTGTAGCAATTTGTATATGTCTTATCTTTGCTTTCTGATTGAATATTGATGTTGAGATTGAGTTTAGCCTATTTTCAAAGGGCTGATTCCTCTCCTTTAGTCGTATGTATTCTTCGCGACATATAACATATGAACTGTA</genome_strand>
        <mrna_strand>AAACTAAGAAGAATGTAACTGCAATTTAGCCA-TTTATATACCAAGTATCAAAATGTTGT------------------AAAA-AATCAAGATTCTCACTCCTGTTGGT-AAATCATCAAAGATCAAAATTTGAAGCATCC-AAAAACACTCTCAATAAAGAT-CCCTAAAGCTGATTGCTTGTGCAATT--GG-GGCTCAAGGTTTTAGGAGCTGTCTACAAATGGCTGAGATTGTAGAAGCAGATAATTACGAAGGCATAATCACAAGAATCGAGCACAAGTCCCGCAAGATCGAAAGTTTACTCAAACA..............................................................................................................................GTATAAACCAGTGGAAGCTCTGAAAACAGCTCTAGAAGGATCACCTCCCAAAACCAAGGATGAAAGATGCAAG........................................................................................................................TCTGCTAATTGGATAGTGGTGCATAGGGCTATAATGGCTAACAAGGATGTGGATAGCTTGTTCTCTGCATTGGATCCTGAGTACTATGATATTCTCATGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGTACAGAGGTTTGTCTACTGGAGACCGCCCAACATGTGACCAATGTCTAAGGATCCATGAAAAACTAACAGAAAAAGCTGGTTTGGGATGCATACTGCGTTGTCTTGCTGACACTGTGAATACTGTGTGACTAATACGCTGGATGAACACAATACTGTAGCAATCTGTACATGTCTTGTCTTTGCATTTCGATTGAATATTGATGTTGAGATTGAG-TTAGCCTATTTTCAAAGGGCTGCTT-CTCTCC-TTAGTCGTCTGTATTCTTCG-GACATATACAATATGAACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615480" ref_strand="+" ref_description="SGN-E615480 [65279]">
      <seq>gtaagtttaagaaactaagaagaatgtaactgcaatttagccatttatataccaagtatcaaaatgttgtaaaaaatcaagattctcactcctgttggtaaatcatcaaagatcaaaatttgaagcatccaaaaacactctcaataaagatccctaaagctgattgcttgtgcaattggggctcaaggttttaggagctgtctacaaatggctgagattgtagaagcagataattacgaaggcataatcacaagaatcgagcacaagtcccgcaagatcgaaagtttactcaaacagtataaaccagtggaagctctgaaaacagctctagaaggatcacctcccaaaaccaaggatgaaagatgcaagtctgctaattggatagtggtgcatagggctataatggctaacaaggatgtggatagcttgttctctgcattggatcctgagtactatgatattctcatgaagtacttgtacagaggtttgtctactggagaccgcccaacatgtgaccaatgtctaaggatccatgaaaaactaacagaaaaagctggtttgggatgcatactgcgttgtcttgctgacactgtgaatactgtgtgactaatacgctggatgaacacaatactgtagcaatctgtacatgtcttgtctttgcatttcgattgaatattgatgtcgagattgagtttagcctattttcaaagggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="62947" stop="56962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62647" g_stop="62327" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62326" i_stop="62201" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62200" g_stop="62128" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="369" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62127" i_stop="62008" i_length="120">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62007" g_stop="61907" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="470" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61906" i_stop="57496" i_length="4411">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57495" g_stop="57348" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="618" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E615480" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62647" e_stop="62327"/>
          <exon e_start="62200" e_stop="62128"/>
          <exon e_start="62007" e_stop="61907"/>
          <exon e_start="57495" e_stop="57348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGTTTAAGAAACTAAGAGGAATGTAACTGCAATTTACTCATTTTATATACCAAGTATCAAAATGTTGTAAAAAAACAAACAAACAAAAAAGAATCAAGATTCTCACTCCTGTTGGTAAAATCATCGAGGACCAAAATTTGAAGCATCCAAAAAACACTCTCAATAAAAATCCCCTAAAGCTGATTGCTTGTGCAATTGAGGAGGCTCAAGGTTTT-GGAGCTGTCTACAAATGGCTGAGATTGTCGAAGCAGATAATTACGAAGGCATAATCACAAGAATCGAGCACAAGTCCCGCAAGATCGAAAGTTTACTCAAACAGTACACAAATTTTCTACCCTTTATAAAGTTTCAATTTTTCCTTTTTCATATCTGCATAAAAACAGAACCCCACTTCTGTAATTGTTTAATAATGAATACCCATTTGTGATTTTGGTTATTTGTTAGGTATAAACCAGTGGAAGCTCTGAAAACAGCTCTAGAAGGATCACCTCCTAAGACCAAGGATGAAAGATGCAAGGTTCAATCTTTTTGCTCATGGCTTTTGTAAAAGTATGTTTTTTTTAATTAGAATATGAGTCTACTCACAGCTTGTGAGTTGACAGTTTTCTTTTTTTTTTGTGTGTGTTTGTTTTTGCAGTCTGCTAATTGGATAGTGGTGCATAGGGCTATAATGGCTATCAAGGATGTGGATAGCTTGTTCTCTGCATTGGATCCTGAGTATTATGATATTCTCATGAAGTAAGTTCATTTTTTCCCCTAATTATTATATGTATTGAGGCCTAGATGTGAATCCTGTCCATAGAAATTTGTTATGGTGGTATGATTCGAGTACTATATCTCCGATGCTTCATTATTGCCTACTGGAATATAGAATGTAAATGGCAAGATCATGTGAATTGTGTGAAATCAGTGATTTTATTTACTTGAGGGCTTTGATGCATTTTTGACTGATTGAGATTTGGACAAAGGGACTCCACTTAATTATCTATACTTGTTTAGCAATCCTCAAAATATTATTGTTCAGGCTCTGGTGCTGCTGTTATGCATACATTAATGGGAATGTGATGCAAGGCTTGTAATCCCATCTTCACAAAGATATTTAGAACTTTAACATTTCAGTTGAGTTACAAAAATTGATGCAAGGAAGTGGAATTTAAAGAAATCTAAATCTGGCAGAGAAGTATCCGACAATGATCTTTTGAAATTGAACCATCTGATGGAAATCAGAGAAGGTTTTATTGAAGTTCCAGAGCTTGTCTTTTCAGGAAATAGCTGACAAACTCTTTGAGCTGATGGTGTTGCAATGCATTACTTCGTGCAGTTAAGTATATATATAATTAATTTTAAGATCAAGAAGAAAGTGCTGCTCTATGATTAAATAGACAAATAATGTACTAGGCCAGTTTGCGTATAACAACCAGTTTAGAGTGATAAACATGTTCAAGTAGAAATAAGCCAGGACAGAATATCCTAGTGATAAAATCCTTATACCTCCAGTTTTGATGTCGGGGACTCGGGGTTTGAGTCACCAATGGAAGAAAAATGGAAAAAGCCACACTGTTGGAATCCTAGGTTCAGGAACCTTGGGGATGGGGTTTACCATACTCAGACAAGAAAAACAGTTAAGTAGAATAATCGATTGAACAATCTTTTAAAGCTCTTACATTGAGTATCATGGCCTGAAAATCATATATTTTGAGATTGCACATTCTTATATATATATATTATGTTTATTTACTTTAGGTTAAAATGGATTTGAGATGGGTCATGAAATCTGTTGACAATGAAATACTTCGTTAAGATTTTTGAAGAACTTTAATCGGACATTTTGGTAAATGCCAACAATATGCTTTTTCAAATTTAATTGACAACATGCAAACATTTTTTGACCACAGCTCAGGTTTTTTAATGTGCAACAACTAGCTAAACTTGGTATTGTTTTACATCTCAATGATACAGCTTTGAAGAAATGTTTTTTTAAATGAATGCACCATGTTGGTAGGTGAGAATGTCTTTTCATTGATTTTATACTATAAGCAACCAGGACTGGTGTAATACTTGCTAGTTGCTTGATCGGGTATAAATCTCAGTCCTGAAATCTGAGGTGAGACTACATACTTGAACACTAAAATAAAGTTTATGGAATATTGACAAGAAGGGTCTGAAAGTTCATTTGGAATAACTTGGGTTGGTATGTATATCTGGCGCTAAGATGAAGATATTTCAACTTAAGAACCAAGGGACTTCTCTTACTTTTATCTATATGTTGTTTCTTTACAAAATTTTACCTTCAACTTATGATAAAGGGCTTAATTCAGGGGTTGGAAGGGGTGAAGTTCCTAATTTCTGGAAACATCTGTAGATAAGAACTTGGTAAAAAAAAAAAAGCAAAGTTGGCCCTACATTTAAATGTGTAGCATATTTACAACTCTCATATATTAGCTTAAAATATTGGCCGAGGAGATTGAGAATAGAGAGATATAGAGCTTTAACTTGCTACTGGGATGACTTGGAGAAATTTGGCATGATCAGTCAAGATAGGTCTGACCTATGTGGTGATCATGTTTGGGTACTTTTTATTGGTTTTGTACGGGCTTAAATAAGTTGAGTTAGTACGGAAGTCAGGTTTTGGTATTATAATCTTGAACTTGAGATGCTCAGGTTGGTATAGATTTTTCAGTAAGGCTAGACACCTTCCCTGTTGTAGCTTAGAATATTATGGGATAGCTCGCTGCTGCAAATCAAGGAAGAAACATTGAACGCACAGTCTCAGAGATTCAATCCGTTATGCCACTGTTCTAAATGGCGGCAATTATCGATATTGAGAAATGAGAGAGACTTAAATGGTAGGCAAGTAGACCATTTACATACTGCTCCGCACTTAGAAGTCAGTCCCCGCTGGTTCAAATTGTCTCTTAGGATAGATGTGACTGATAAGTCCTCGTTTTTCTTTCCATTTATCAGAAAGAAAAGGACCTTGTCTTTCCTTTTTGTTTTGTGAAACAATTGAACTATTTTCTTCTATCAAAATATTGTATAGCCTTCTTGCTTTGAGATACAAATTTCTCTTGATATGTACATTCTGCACTGTAGTAAGCATACTGTAGTAGGAGATGCATAAGCCCATTTGTCTCTGTACATATTCAGACATTATCCATTATTTTCCTGTCCAGTTGTATTTGGCTCCGTTTCACTTTCTTAAGGTTTTAACTTTTATCTAGACCAATTTACTTAATGTGTACAATAATTTGAAATAATACTTAACAAAATTTAGATAGCAAAGTAAAAATGCTAAAAGGTTGAATTTTTTTAGTCAGAAATCATTTTCATTAATATGTCAAGATGGTGCTAAAAAGTACACATGCCGTGTGGTAATGTAGGCTACTTTTGATTTCCTATCAAGATATCGAATTTACTTTACAAGAATATATTCTCTCTACTCCATATATATAAATGAGATGAAAGAAACTCTTTAGATTCCTTAAGTTTTTCTCATTGCTGCACTGTTAGTTCTTTTGTTCAGCGACAATTGCCAGATGAGCAATCACATAGTCCCTTTGATAAGCATGCTTAAGTTTAATTTCAGTTTCCACACCATATGTTGAACTAAATTGTTTCCAGTTACAATTTCCAACAATAATACCAATAAATCTTGTAAAATCTATCTTTTCCCTTCAATAATACCTTTTCTTAGTGCTATTCAGTTACCTCATTCAACTACTGTCCATTTCTAGATGTTCTGTATTTAGAAACTATCACCTCTTTTTTGCCTTTTTTATTGACAAAAAAAAAATTCACCTTTTTATGTACAGCATCACCTTATATGCAAATCTCCATATTCATTTTCATGTCAAGGCCAATACATCTAATCTCCTTACTCCTCCAGTGTAGGGGGCTATATTTTCTCCCCATCAAATGGTTGATTTCAAGGACTTTCTCTTCTCTCTTTAGACAAGTATGGGATCTTCAACCCGCTTAACATTTGTTCTAAATTTGCAATCCCCTATTGCAATATATTGACAATATGCAGTTAATTTTTTATTTTAAAAAAAAAAAAAAATTCTGCAAAGGATTGCTCATTGCTCATGGAACTACTCTTTGGACCATATTTAAATCCTTTTCCCGTATGTATATATTTTATTTTCTATGAGTTTAATATAGTATAAAGCTATGATGGAGTTGCATGCCAAATACAAAGACTTGAGTATTTATGCTCCCCATTGGTGTGACATTAGCATCAGAGGAACAAACAACAGACATGAGAGTCATGTCTTATAGTTGGACACAGTGTTTTGAAAATAAGGGAATATGACACAAGCTAGACAGGATATTATAGTTTTGAAGTATTGTATGATGCATGTTAATTCCTTCAAAAGTTATGCTTTCTTTTTGTGGAGGATCTGAGCAACAGAGATTAAAAAAAAATATTTAAGTTATTAAAAAAATACAAAAAGAAATATGAAATGAATCCACAAGTCTAGTAAAGCATCCTAATCGCACCAAATGCTGAGTTATCAACATATAGCAAAATACAAAGGTCTGCTTCTTGGCTATGTTAAAAAGAATGGCTTCATCTCTTGGCTAATTGGTACTTAGATGCATCTCCTCATAAACGTCTGTGGTTGACATAGGTTAATAGTATTTATTTAATTAAGGTGAGGGAAAAAGAAAAGAGATTTCTTACCTGTACCAATATGGTTGTATGCTGATTAGTATTGATTCTTTAGTTGCAGTAGAGGTTGTTACACCAATATTCTACTGTGAAACAGGATGCCAACTTTAAATAATTCACCGCTGATTTGGTTTCTTTAGGTTCTGGGTTTAATGTTTCATCCTAAATCTGCTTATATCTTCATTAGCGTAAAGAGGATGAAGGAATTATGTGATGCAAGGTGACATTTTCTCGTTGATGATCTCTTTTTGACAGCTTTCATTTGCTTATAGGACCATAGCAGCGACCCCAGCATAACTCATTTTCTTTTTCTGATGTTGGACCATCTAGACTCTGCTTCACACATGAACTCGTGTGATGTAAGCATATTTGAGACACAATGTGAAATTGCAATGTGATTTATCCAATAGATCTACCTGATTCACCAAGTAATGTAACATACAAGATTCACGGTTGAACTGTCTATCTGATGAGCAGGTACTTGTACAGAGGTTTGTCTACTGGAGACCGCCCAACATGTGACCAATGTCTAAGGATCCATGAAAAACTAACAGAAAAAGCTGGTTTGGGATGCATACTGCGTTGTCTTGCTGACACTGTGAATACTGTGTGACTAATACGCTGG</genome_strand>
        <mrna_strand>GTAAGTTTAAGAAACTAAGAAGAATGTAACTGCAATTTAGCCA-TTTATATACCAAGTATCAAAATGTTGT-------------A--AAA-AA---TCAAGATTCTCACTCCTGTTGGT-AAATCATCAAAGATCAAAATTTGAAGCATCC-AAAAACACTCTCAATAAAGAT-CCCTAAAGCTGATTGCTTGTGCAATT--GG-GGCTCAAGGTTTTAGGAGCTGTCTACAAATGGCTGAGATTGTAGAAGCAGATAATTACGAAGGCATAATCACAAGAATCGAGCACAAGTCCCGCAAGATCGAAAGTTTACTCAAACA..............................................................................................................................GTATAAACCAGTGGAAGCTCTGAAAACAGCTCTAGAAGGATCACCTCCCAAAACCAAGGATGAAAGATGCAAG........................................................................................................................TCTGCTAATTGGATAGTGGTGCATAGGGCTATAATGGCTAACAAGGATGTGGATAGCTTGTTCTCTGCATTGGATCCTGAGTACTATGATATTCTCATGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGTACAGAGGTTTGTCTACTGGAGACCGCCCAACATGTGACCAATGTCTAAGGATCCATGAAAAACTAACAGAAAAAGCTGGTTTGGGATGCATACTGCGTTGTCTTGCTGACACTGTGAATACTGTGTGACTAATACGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291463" ref_strand="+" ref_description="SGN-E291463 [cLET-2-F3]">
      <seq>aaaaaacactctcaataaaaatcccctaaagctgattgcttgtgcaattgaggaggctcaaggttttggagctgtctacaaatggctgagattgtcgaagcagataattacgaaggcataatcacaagaatcgagcacaagtcccgcaagatcgaaagtttactcaaacagtataaaccagtggaagctctgaaaacagctctagaaggatcacctcctaagaccaaggatgaaagatgcaagtctgctaattggatagtggtgcatagggctataatggctatcaaggatgtggatagcttgttctctgcattggatcctgagtattatgatattctcatgaagtacttgtacagaggtttgtctactggagaccgcccaacatgtgaccaatgtctaaggatccatgaaaaactaacagaaaaagctggtttgggatgcatactgcgttgtcttgctgacactgtgaatactgtgtgactaatacgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="62796" stop="57048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62496" g_stop="62327" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62326" i_stop="62201" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62200" g_stop="62128" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="243" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62127" i_stop="62008" i_length="120">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62007" g_stop="61907" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="344" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61906" i_stop="57496" i_length="4411">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57495" g_stop="57348" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="492" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E291463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62496" e_stop="62327"/>
          <exon e_start="62200" e_stop="62128"/>
          <exon e_start="62007" e_stop="61907"/>
          <exon e_start="57495" e_stop="57348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACACTCTCAATAAAAATCCCCTAAAGCTGATTGCTTGTGCAATTGAGGAGGCTCAAGGTTTTGGAGCTGTCTACAAATGGCTGAGATTGTCGAAGCAGATAATTACGAAGGCATAATCACAAGAATCGAGCACAAGTCCCGCAAGATCGAAAGTTTACTCAAACAGTACACAAATTTTCTACCCTTTATAAAGTTTCAATTTTTCCTTTTTCATATCTGCATAAAAACAGAACCCCACTTCTGTAATTGTTTAATAATGAATACCCATTTGTGATTTTGGTTATTTGTTAGGTATAAACCAGTGGAAGCTCTGAAAACAGCTCTAGAAGGATCACCTCCTAAGACCAAGGATGAAAGATGCAAGGTTCAATCTTTTTGCTCATGGCTTTTGTAAAAGTATGTTTTTTTTAATTAGAATATGAGTCTACTCACAGCTTGTGAGTTGACAGTTTTCTTTTTTTTTTGTGTGTGTTTGTTTTTGCAGTCTGCTAATTGGATAGTGGTGCATAGGGCTATAATGGCTATCAAGGATGTGGATAGCTTGTTCTCTGCATTGGATCCTGAGTATTATGATATTCTCATGAAGTAAGTTCATTTTTTCCCCTAATTATTATATGTATTGAGGCCTAGATGTGAATCCTGTCCATAGAAATTTGTTATGGTGGTATGATTCGAGTACTATATCTCCGATGCTTCATTATTGCCTACTGGAATATAGAATGTAAATGGCAAGATCATGTGAATTGTGTGAAATCAGTGATTTTATTTACTTGAGGGCTTTGATGCATTTTTGACTGATTGAGATTTGGACAAAGGGACTCCACTTAATTATCTATACTTGTTTAGCAATCCTCAAAATATTATTGTTCAGGCTCTGGTGCTGCTGTTATGCATACATTAATGGGAATGTGATGCAAGGCTTGTAATCCCATCTTCACAAAGATATTTAGAACTTTAACATTTCAGTTGAGTTACAAAAATTGATGCAAGGAAGTGGAATTTAAAGAAATCTAAATCTGGCAGAGAAGTATCCGACAATGATCTTTTGAAATTGAACCATCTGATGGAAATCAGAGAAGGTTTTATTGAAGTTCCAGAGCTTGTCTTTTCAGGAAATAGCTGACAAACTCTTTGAGCTGATGGTGTTGCAATGCATTACTTCGTGCAGTTAAGTATATATATAATTAATTTTAAGATCAAGAAGAAAGTGCTGCTCTATGATTAAATAGACAAATAATGTACTAGGCCAGTTTGCGTATAACAACCAGTTTAGAGTGATAAACATGTTCAAGTAGAAATAAGCCAGGACAGAATATCCTAGTGATAAAATCCTTATACCTCCAGTTTTGATGTCGGGGACTCGGGGTTTGAGTCACCAATGGAAGAAAAATGGAAAAAGCCACACTGTTGGAATCCTAGGTTCAGGAACCTTGGGGATGGGGTTTACCATACTCAGACAAGAAAAACAGTTAAGTAGAATAATCGATTGAACAATCTTTTAAAGCTCTTACATTGAGTATCATGGCCTGAAAATCATATATTTTGAGATTGCACATTCTTATATATATATATTATGTTTATTTACTTTAGGTTAAAATGGATTTGAGATGGGTCATGAAATCTGTTGACAATGAAATACTTCGTTAAGATTTTTGAAGAACTTTAATCGGACATTTTGGTAAATGCCAACAATATGCTTTTTCAAATTTAATTGACAACATGCAAACATTTTTTGACCACAGCTCAGGTTTTTTAATGTGCAACAACTAGCTAAACTTGGTATTGTTTTACATCTCAATGATACAGCTTTGAAGAAATGTTTTTTTAAATGAATGCACCATGTTGGTAGGTGAGAATGTCTTTTCATTGATTTTATACTATAAGCAACCAGGACTGGTGTAATACTTGCTAGTTGCTTGATCGGGTATAAATCTCAGTCCTGAAATCTGAGGTGAGACTACATACTTGAACACTAAAATAAAGTTTATGGAATATTGACAAGAAGGGTCTGAAAGTTCATTTGGAATAACTTGGGTTGGTATGTATATCTGGCGCTAAGATGAAGATATTTCAACTTAAGAACCAAGGGACTTCTCTTACTTTTATCTATATGTTGTTTCTTTACAAAATTTTACCTTCAACTTATGATAAAGGGCTTAATTCAGGGGTTGGAAGGGGTGAAGTTCCTAATTTCTGGAAACATCTGTAGATAAGAACTTGGTAAAAAAAAAAAAGCAAAGTTGGCCCTACATTTAAATGTGTAGCATATTTACAACTCTCATATATTAGCTTAAAATATTGGCCGAGGAGATTGAGAATAGAGAGATATAGAGCTTTAACTTGCTACTGGGATGACTTGGAGAAATTTGGCATGATCAGTCAAGATAGGTCTGACCTATGTGGTGATCATGTTTGGGTACTTTTTATTGGTTTTGTACGGGCTTAAATAAGTTGAGTTAGTACGGAAGTCAGGTTTTGGTATTATAATCTTGAACTTGAGATGCTCAGGTTGGTATAGATTTTTCAGTAAGGCTAGACACCTTCCCTGTTGTAGCTTAGAATATTATGGGATAGCTCGCTGCTGCAAATCAAGGAAGAAACATTGAACGCACAGTCTCAGAGATTCAATCCGTTATGCCACTGTTCTAAATGGCGGCAATTATCGATATTGAGAAATGAGAGAGACTTAAATGGTAGGCAAGTAGACCATTTACATACTGCTCCGCACTTAGAAGTCAGTCCCCGCTGGTTCAAATTGTCTCTTAGGATAGATGTGACTGATAAGTCCTCGTTTTTCTTTCCATTTATCAGAAAGAAAAGGACCTTGTCTTTCCTTTTTGTTTTGTGAAACAATTGAACTATTTTCTTCTATCAAAATATTGTATAGCCTTCTTGCTTTGAGATACAAATTTCTCTTGATATGTACATTCTGCACTGTAGTAAGCATACTGTAGTAGGAGATGCATAAGCCCATTTGTCTCTGTACATATTCAGACATTATCCATTATTTTCCTGTCCAGTTGTATTTGGCTCCGTTTCACTTTCTTAAGGTTTTAACTTTTATCTAGACCAATTTACTTAATGTGTACAATAATTTGAAATAATACTTAACAAAATTTAGATAGCAAAGTAAAAATGCTAAAAGGTTGAATTTTTTTAGTCAGAAATCATTTTCATTAATATGTCAAGATGGTGCTAAAAAGTACACATGCCGTGTGGTAATGTAGGCTACTTTTGATTTCCTATCAAGATATCGAATTTACTTTACAAGAATATATTCTCTCTACTCCATATATATAAATGAGATGAAAGAAACTCTTTAGATTCCTTAAGTTTTTCTCATTGCTGCACTGTTAGTTCTTTTGTTCAGCGACAATTGCCAGATGAGCAATCACATAGTCCCTTTGATAAGCATGCTTAAGTTTAATTTCAGTTTCCACACCATATGTTGAACTAAATTGTTTCCAGTTACAATTTCCAACAATAATACCAATAAATCTTGTAAAATCTATCTTTTCCCTTCAATAATACCTTTTCTTAGTGCTATTCAGTTACCTCATTCAACTACTGTCCATTTCTAGATGTTCTGTATTTAGAAACTATCACCTCTTTTTTGCCTTTTTTATTGACAAAAAAAAAATTCACCTTTTTATGTACAGCATCACCTTATATGCAAATCTCCATATTCATTTTCATGTCAAGGCCAATACATCTAATCTCCTTACTCCTCCAGTGTAGGGGGCTATATTTTCTCCCCATCAAATGGTTGATTTCAAGGACTTTCTCTTCTCTCTTTAGACAAGTATGGGATCTTCAACCCGCTTAACATTTGTTCTAAATTTGCAATCCCCTATTGCAATATATTGACAATATGCAGTTAATTTTTTATTTTAAAAAAAAAAAAAAATTCTGCAAAGGATTGCTCATTGCTCATGGAACTACTCTTTGGACCATATTTAAATCCTTTTCCCGTATGTATATATTTTATTTTCTATGAGTTTAATATAGTATAAAGCTATGATGGAGTTGCATGCCAAATACAAAGACTTGAGTATTTATGCTCCCCATTGGTGTGACATTAGCATCAGAGGAACAAACAACAGACATGAGAGTCATGTCTTATAGTTGGACACAGTGTTTTGAAAATAAGGGAATATGACACAAGCTAGACAGGATATTATAGTTTTGAAGTATTGTATGATGCATGTTAATTCCTTCAAAAGTTATGCTTTCTTTTTGTGGAGGATCTGAGCAACAGAGATTAAAAAAAAATATTTAAGTTATTAAAAAAATACAAAAAGAAATATGAAATGAATCCACAAGTCTAGTAAAGCATCCTAATCGCACCAAATGCTGAGTTATCAACATATAGCAAAATACAAAGGTCTGCTTCTTGGCTATGTTAAAAAGAATGGCTTCATCTCTTGGCTAATTGGTACTTAGATGCATCTCCTCATAAACGTCTGTGGTTGACATAGGTTAATAGTATTTATTTAATTAAGGTGAGGGAAAAAGAAAAGAGATTTCTTACCTGTACCAATATGGTTGTATGCTGATTAGTATTGATTCTTTAGTTGCAGTAGAGGTTGTTACACCAATATTCTACTGTGAAACAGGATGCCAACTTTAAATAATTCACCGCTGATTTGGTTTCTTTAGGTTCTGGGTTTAATGTTTCATCCTAAATCTGCTTATATCTTCATTAGCGTAAAGAGGATGAAGGAATTATGTGATGCAAGGTGACATTTTCTCGTTGATGATCTCTTTTTGACAGCTTTCATTTGCTTATAGGACCATAGCAGCGACCCCAGCATAACTCATTTTCTTTTTCTGATGTTGGACCATCTAGACTCTGCTTCACACATGAACTCGTGTGATGTAAGCATATTTGAGACACAATGTGAAATTGCAATGTGATTTATCCAATAGATCTACCTGATTCACCAAGTAATGTAACATACAAGATTCACGGTTGAACTGTCTATCTGATGAGCAGGTACTTGTACAGAGGTTTGTCTACTGGAGACCGCCCAACATGTGACCAATGTCTAAGGATCCATGAAAAACTAACAGAAAAAGCTGGTTTGGGATGCATACTGCGTTGTCTTGCTGACACTGTGAATACTGTGTGACTAATACGCTGG</genome_strand>
        <mrna_strand>AAAAAACACTCTCAATAAAAATCCCCTAAAGCTGATTGCTTGTGCAATTGAGGAGGCTCAAGGTTTTGGAGCTGTCTACAAATGGCTGAGATTGTCGAAGCAGATAATTACGAAGGCATAATCACAAGAATCGAGCACAAGTCCCGCAAGATCGAAAGTTTACTCAAACA..............................................................................................................................GTATAAACCAGTGGAAGCTCTGAAAACAGCTCTAGAAGGATCACCTCCTAAGACCAAGGATGAAAGATGCAAG........................................................................................................................TCTGCTAATTGGATAGTGGTGCATAGGGCTATAATGGCTATCAAGGATGTGGATAGCTTGTTCTCTGCATTGGATCCTGAGTATTATGATATTCTCATGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGTACAGAGGTTTGTCTACTGGAGACCGCCCAACATGTGACCAATGTCTAAGGATCCATGAAAAACTAACAGAAAAAGCTGGTTTGGGATGCATACTGCGTTGTCTTGCTGACACTGTGAATACTGTGTGACTAATACGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290101" ref_strand="+" ref_description="SGN-E290101 [cLET-5-J13]">
      <seq>aacactctcaataaaaatcccctaaagctgattgcttgtgcaattgaggaggctcaaggttttggagctgtctacaaatggctgagattgtcgaagcagataattacgaaggcataatcacaagaatcgagcacaagtcccgcaagatcgaaagtttactcaaacagtataaaccagtggaagctctgaaaacagctctagaaggatcacctcctaagaccaaggatgaaagatgcaagtctgctaattggatagtggtgcatagggctataatggctatcaaggatgtggatagcttgttctctgcattggatcctgagtattatgatattctcatgaagtacttgtacagaggtttgtctactggagaccgcccaacatgtgaccaatgtctaaggatccatgaaaaactaacagaaaaagctggtttgggatgcatactgcgttgtcttgctgacactgtgaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="62792" stop="57066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62492" g_stop="62327" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62326" i_stop="62201" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62200" g_stop="62128" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="239" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62127" i_stop="62008" i_length="120">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62007" g_stop="61907" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="340" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61906" i_stop="57496" i_length="4411">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57495" g_stop="57366" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="470" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E290101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62492" e_stop="62327"/>
          <exon e_start="62200" e_stop="62128"/>
          <exon e_start="62007" e_stop="61907"/>
          <exon e_start="57495" e_stop="57366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTCTCAATAAAAATCCCCTAAAGCTGATTGCTTGTGCAATTGAGGAGGCTCAAGGTTTTGGAGCTGTCTACAAATGGCTGAGATTGTCGAAGCAGATAATTACGAAGGCATAATCACAAGAATCGAGCACAAGTCCCGCAAGATCGAAAGTTTACTCAAACAGTACACAAATTTTCTACCCTTTATAAAGTTTCAATTTTTCCTTTTTCATATCTGCATAAAAACAGAACCCCACTTCTGTAATTGTTTAATAATGAATACCCATTTGTGATTTTGGTTATTTGTTAGGTATAAACCAGTGGAAGCTCTGAAAACAGCTCTAGAAGGATCACCTCCTAAGACCAAGGATGAAAGATGCAAGGTTCAATCTTTTTGCTCATGGCTTTTGTAAAAGTATGTTTTTTTTAATTAGAATATGAGTCTACTCACAGCTTGTGAGTTGACAGTTTTCTTTTTTTTTTGTGTGTGTTTGTTTTTGCAGTCTGCTAATTGGATAGTGGTGCATAGGGCTATAATGGCTATCAAGGATGTGGATAGCTTGTTCTCTGCATTGGATCCTGAGTATTATGATATTCTCATGAAGTAAGTTCATTTTTTCCCCTAATTATTATATGTATTGAGGCCTAGATGTGAATCCTGTCCATAGAAATTTGTTATGGTGGTATGATTCGAGTACTATATCTCCGATGCTTCATTATTGCCTACTGGAATATAGAATGTAAATGGCAAGATCATGTGAATTGTGTGAAATCAGTGATTTTATTTACTTGAGGGCTTTGATGCATTTTTGACTGATTGAGATTTGGACAAAGGGACTCCACTTAATTATCTATACTTGTTTAGCAATCCTCAAAATATTATTGTTCAGGCTCTGGTGCTGCTGTTATGCATACATTAATGGGAATGTGATGCAAGGCTTGTAATCCCATCTTCACAAAGATATTTAGAACTTTAACATTTCAGTTGAGTTACAAAAATTGATGCAAGGAAGTGGAATTTAAAGAAATCTAAATCTGGCAGAGAAGTATCCGACAATGATCTTTTGAAATTGAACCATCTGATGGAAATCAGAGAAGGTTTTATTGAAGTTCCAGAGCTTGTCTTTTCAGGAAATAGCTGACAAACTCTTTGAGCTGATGGTGTTGCAATGCATTACTTCGTGCAGTTAAGTATATATATAATTAATTTTAAGATCAAGAAGAAAGTGCTGCTCTATGATTAAATAGACAAATAATGTACTAGGCCAGTTTGCGTATAACAACCAGTTTAGAGTGATAAACATGTTCAAGTAGAAATAAGCCAGGACAGAATATCCTAGTGATAAAATCCTTATACCTCCAGTTTTGATGTCGGGGACTCGGGGTTTGAGTCACCAATGGAAGAAAAATGGAAAAAGCCACACTGTTGGAATCCTAGGTTCAGGAACCTTGGGGATGGGGTTTACCATACTCAGACAAGAAAAACAGTTAAGTAGAATAATCGATTGAACAATCTTTTAAAGCTCTTACATTGAGTATCATGGCCTGAAAATCATATATTTTGAGATTGCACATTCTTATATATATATATTATGTTTATTTACTTTAGGTTAAAATGGATTTGAGATGGGTCATGAAATCTGTTGACAATGAAATACTTCGTTAAGATTTTTGAAGAACTTTAATCGGACATTTTGGTAAATGCCAACAATATGCTTTTTCAAATTTAATTGACAACATGCAAACATTTTTTGACCACAGCTCAGGTTTTTTAATGTGCAACAACTAGCTAAACTTGGTATTGTTTTACATCTCAATGATACAGCTTTGAAGAAATGTTTTTTTAAATGAATGCACCATGTTGGTAGGTGAGAATGTCTTTTCATTGATTTTATACTATAAGCAACCAGGACTGGTGTAATACTTGCTAGTTGCTTGATCGGGTATAAATCTCAGTCCTGAAATCTGAGGTGAGACTACATACTTGAACACTAAAATAAAGTTTATGGAATATTGACAAGAAGGGTCTGAAAGTTCATTTGGAATAACTTGGGTTGGTATGTATATCTGGCGCTAAGATGAAGATATTTCAACTTAAGAACCAAGGGACTTCTCTTACTTTTATCTATATGTTGTTTCTTTACAAAATTTTACCTTCAACTTATGATAAAGGGCTTAATTCAGGGGTTGGAAGGGGTGAAGTTCCTAATTTCTGGAAACATCTGTAGATAAGAACTTGGTAAAAAAAAAAAAGCAAAGTTGGCCCTACATTTAAATGTGTAGCATATTTACAACTCTCATATATTAGCTTAAAATATTGGCCGAGGAGATTGAGAATAGAGAGATATAGAGCTTTAACTTGCTACTGGGATGACTTGGAGAAATTTGGCATGATCAGTCAAGATAGGTCTGACCTATGTGGTGATCATGTTTGGGTACTTTTTATTGGTTTTGTACGGGCTTAAATAAGTTGAGTTAGTACGGAAGTCAGGTTTTGGTATTATAATCTTGAACTTGAGATGCTCAGGTTGGTATAGATTTTTCAGTAAGGCTAGACACCTTCCCTGTTGTAGCTTAGAATATTATGGGATAGCTCGCTGCTGCAAATCAAGGAAGAAACATTGAACGCACAGTCTCAGAGATTCAATCCGTTATGCCACTGTTCTAAATGGCGGCAATTATCGATATTGAGAAATGAGAGAGACTTAAATGGTAGGCAAGTAGACCATTTACATACTGCTCCGCACTTAGAAGTCAGTCCCCGCTGGTTCAAATTGTCTCTTAGGATAGATGTGACTGATAAGTCCTCGTTTTTCTTTCCATTTATCAGAAAGAAAAGGACCTTGTCTTTCCTTTTTGTTTTGTGAAACAATTGAACTATTTTCTTCTATCAAAATATTGTATAGCCTTCTTGCTTTGAGATACAAATTTCTCTTGATATGTACATTCTGCACTGTAGTAAGCATACTGTAGTAGGAGATGCATAAGCCCATTTGTCTCTGTACATATTCAGACATTATCCATTATTTTCCTGTCCAGTTGTATTTGGCTCCGTTTCACTTTCTTAAGGTTTTAACTTTTATCTAGACCAATTTACTTAATGTGTACAATAATTTGAAATAATACTTAACAAAATTTAGATAGCAAAGTAAAAATGCTAAAAGGTTGAATTTTTTTAGTCAGAAATCATTTTCATTAATATGTCAAGATGGTGCTAAAAAGTACACATGCCGTGTGGTAATGTAGGCTACTTTTGATTTCCTATCAAGATATCGAATTTACTTTACAAGAATATATTCTCTCTACTCCATATATATAAATGAGATGAAAGAAACTCTTTAGATTCCTTAAGTTTTTCTCATTGCTGCACTGTTAGTTCTTTTGTTCAGCGACAATTGCCAGATGAGCAATCACATAGTCCCTTTGATAAGCATGCTTAAGTTTAATTTCAGTTTCCACACCATATGTTGAACTAAATTGTTTCCAGTTACAATTTCCAACAATAATACCAATAAATCTTGTAAAATCTATCTTTTCCCTTCAATAATACCTTTTCTTAGTGCTATTCAGTTACCTCATTCAACTACTGTCCATTTCTAGATGTTCTGTATTTAGAAACTATCACCTCTTTTTTGCCTTTTTTATTGACAAAAAAAAAATTCACCTTTTTATGTACAGCATCACCTTATATGCAAATCTCCATATTCATTTTCATGTCAAGGCCAATACATCTAATCTCCTTACTCCTCCAGTGTAGGGGGCTATATTTTCTCCCCATCAAATGGTTGATTTCAAGGACTTTCTCTTCTCTCTTTAGACAAGTATGGGATCTTCAACCCGCTTAACATTTGTTCTAAATTTGCAATCCCCTATTGCAATATATTGACAATATGCAGTTAATTTTTTATTTTAAAAAAAAAAAAAAATTCTGCAAAGGATTGCTCATTGCTCATGGAACTACTCTTTGGACCATATTTAAATCCTTTTCCCGTATGTATATATTTTATTTTCTATGAGTTTAATATAGTATAAAGCTATGATGGAGTTGCATGCCAAATACAAAGACTTGAGTATTTATGCTCCCCATTGGTGTGACATTAGCATCAGAGGAACAAACAACAGACATGAGAGTCATGTCTTATAGTTGGACACAGTGTTTTGAAAATAAGGGAATATGACACAAGCTAGACAGGATATTATAGTTTTGAAGTATTGTATGATGCATGTTAATTCCTTCAAAAGTTATGCTTTCTTTTTGTGGAGGATCTGAGCAACAGAGATTAAAAAAAAATATTTAAGTTATTAAAAAAATACAAAAAGAAATATGAAATGAATCCACAAGTCTAGTAAAGCATCCTAATCGCACCAAATGCTGAGTTATCAACATATAGCAAAATACAAAGGTCTGCTTCTTGGCTATGTTAAAAAGAATGGCTTCATCTCTTGGCTAATTGGTACTTAGATGCATCTCCTCATAAACGTCTGTGGTTGACATAGGTTAATAGTATTTATTTAATTAAGGTGAGGGAAAAAGAAAAGAGATTTCTTACCTGTACCAATATGGTTGTATGCTGATTAGTATTGATTCTTTAGTTGCAGTAGAGGTTGTTACACCAATATTCTACTGTGAAACAGGATGCCAACTTTAAATAATTCACCGCTGATTTGGTTTCTTTAGGTTCTGGGTTTAATGTTTCATCCTAAATCTGCTTATATCTTCATTAGCGTAAAGAGGATGAAGGAATTATGTGATGCAAGGTGACATTTTCTCGTTGATGATCTCTTTTTGACAGCTTTCATTTGCTTATAGGACCATAGCAGCGACCCCAGCATAACTCATTTTCTTTTTCTGATGTTGGACCATCTAGACTCTGCTTCACACATGAACTCGTGTGATGTAAGCATATTTGAGACACAATGTGAAATTGCAATGTGATTTATCCAATAGATCTACCTGATTCACCAAGTAATGTAACATACAAGATTCACGGTTGAACTGTCTATCTGATGAGCAGGTACTTGTACAGAGGTTTGTCTACTGGAGACCGCCCAACATGTGACCAATGTCTAAGGATCCATGAAAAACTAACAGAAAAAGCTGGTTTGGGATGCATACTGCGTTGTCTTGCTGACACTGTGAATACT</genome_strand>
        <mrna_strand>AACACTCTCAATAAAAATCCCCTAAAGCTGATTGCTTGTGCAATTGAGGAGGCTCAAGGTTTTGGAGCTGTCTACAAATGGCTGAGATTGTCGAAGCAGATAATTACGAAGGCATAATCACAAGAATCGAGCACAAGTCCCGCAAGATCGAAAGTTTACTCAAACA..............................................................................................................................GTATAAACCAGTGGAAGCTCTGAAAACAGCTCTAGAAGGATCACCTCCTAAGACCAAGGATGAAAGATGCAAG........................................................................................................................TCTGCTAATTGGATAGTGGTGCATAGGGCTATAATGGCTATCAAGGATGTGGATAGCTTGTTCTCTGCATTGGATCCTGAGTATTATGATATTCTCATGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGTACAGAGGTTTGTCTACTGGAGACCGCCCAACATGTGACCAATGTCTAAGGATCCATGAAAAACTAACAGAAAAAGCTGGTTTGGGATGCATACTGCGTTGTCTTGCTGACACTGTGAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740167" ref_strand="+" ref_description="SGN-E740167 [LC20BD12]">
      <seq>gtttcaatctttgatgatgggcttgagaattattgtgggtctgatgagaaaagaatgatcccaaattgggattctcaattcttgaatcatgaaggtagggaacaggaaaggtttgagcttgttgagggtcaaagaagcagatctttttcaggtgaaaatggggctgaaattttatgtgggtctgatgacaaaagagtgatcccaaattgggattctcagtttttgcattatgagtacgggggtcaagaaaggtctaatcttgatgaagttgagaaaagtagaacctttacggagataggtggggtcgaaaatacagaggtgtttaatgagagggaagtagctcaagtttggaattcacagtactttctaggtgaatccatggtggttgttgccaatgggaactatggggttgaaaaggtatcccacattgaccataaacctttaggcttgcccattaggagcctgagatacagagttaatgctgaaaactctgaatctattgttgaagatactgtgaattcagggagttcgtctggttgtaatggttatgaagttagtgaggagaacataagaggtatggcttcagtcaatttgaggagcaagtttgaggaagcttctggacctcgccaagtttcatggcgctcgaggtctcagaggagggagctagaagaagtgaatacagttagaccgcattcacattctagacctcactcggttggacaattggagtttgggtatctcaagtctaggtcattcaataaaccggtatcctctcggactagtcctacttcttgttcaccaagtattacctcaccttcatcctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="63976" stop="65401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64276" g_stop="65101" g_length="826"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="826" r_length="826" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E740167" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64276" e_stop="65101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAATCTTTGATGATGGGCTTGAGAATTATTGTGGGTCTGATGAGAAAAGAATGATCCCAAATTGGGATTCTCAATTCTTGAATCATGAAGGTAGGGAACAGGAAAGGTTTGAGCTTGTTGAGGGTCAAAGAAGCAGATCTTTTTCAGGTGAAAATGGGGCTGAAATTTTATGTGGGTCTGATGACAAAAGAGTGATCCCAAATTGGGATTCTCAGTTTTTGCATTATGAGTACGGGGGTCAAGAAAGGTCTAATCTTGATGAAGTTGAGAAAAGTAGAACCTTTACGGAGATAGGTGGGGTCGAAAATACAGAGGTGTTTAATGAGAGGGAAGTAGCTCAAGTTTGGAATTCACAGTACTTTCTAGGTGAATCCATGGTGGTTGTTGCCAATGGGAACTATGGGGTTGAAAAGGTATCCCACATTGACCATAAACCTTTAGGCTTGCCCATTAGGAGCCTGAGATACAGAGTTAATGCTGAAAACTCTGAATCTATTGTTGAAGATACTGTGAATTCAGGGAGTTCGTCTGGTTGTAATGGTTATGAAGTTAGTGAGGAGAACATAAGAGGTATGGCTTCAGTCAATTTGAGGAGCAAGTTTGAGGAAGCTTCTGGACCTCGCCAAGTTTCATGGCGCTCGAGGTCTCAGAGGAGGGAGCTAGAAGAAGTGAATACAGTTAGACCGCATTCACATTCTAGACCTCACTCGGTTGGACAATTGGAGTTTGGGTATCTCAAGTCTAGGTCATTCAATAAACCGGTATCCTCTCGGACTAGTCCTACTTCTTGTTCACCAAGTATTACCTCACCTTCATCCTCTT</genome_strand>
        <mrna_strand>GTTTCAATCTTTGATGATGGGCTTGAGAATTATTGTGGGTCTGATGAGAAAAGAATGATCCCAAATTGGGATTCTCAATTCTTGAATCATGAAGGTAGGGAACAGGAAAGGTTTGAGCTTGTTGAGGGTCAAAGAAGCAGATCTTTTTCAGGTGAAAATGGGGCTGAAATTTTATGTGGGTCTGATGACAAAAGAGTGATCCCAAATTGGGATTCTCAGTTTTTGCATTATGAGTACGGGGGTCAAGAAAGGTCTAATCTTGATGAAGTTGAGAAAAGTAGAACCTTTACGGAGATAGGTGGGGTCGAAAATACAGAGGTGTTTAATGAGAGGGAAGTAGCTCAAGTTTGGAATTCACAGTACTTTCTAGGTGAATCCATGGTGGTTGTTGCCAATGGGAACTATGGGGTTGAAAAGGTATCCCACATTGACCATAAACCTTTAGGCTTGCCCATTAGGAGCCTGAGATACAGAGTTAATGCTGAAAACTCTGAATCTATTGTTGAAGATACTGTGAATTCAGGGAGTTCGTCTGGTTGTAATGGTTATGAAGTTAGTGAGGAGAACATAAGAGGTATGGCTTCAGTCAATTTGAGGAGCAAGTTTGAGGAAGCTTCTGGACCTCGCCAAGTTTCATGGCGCTCGAGGTCTCAGAGGAGGGAGCTAGAAGAAGTGAATACAGTTAGACCGCATTCACATTCTAGACCTCACTCGGTTGGACAATTGGAGTTTGGGTATCTCAAGTCTAGGTCATTCAATAAACCGGTATCCTCTCGGACTAGTCCTACTTCTTGTTCACCAAGTATTACCTCACCTTCATCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322842" ref_strand="+" ref_description="SGN-E322842 [cTOB-30-J11]">
      <seq>taaatgctcgagactttgagatatgatgtgttgcttcaccattcacaggtgcaacatccttcaatttttctttagatgtccgaagtgtatcgaactctgaggaagaaccaacactagatcgttgagcctttgaagcaacaaatgcagctgcatcatctattgatctcgctgttggttgactcacttggatgggtggaggcttgacattcttgagtctctcatggtcttgctttctggagtttggcatctctggagaggaagaggatattggtgagattgttctgggagaagaagaattgggaataatttgagcgcgtacacgagtccagaatgaccatggctcttgatgctcggactcagtttctccagcagagtgggacttagaatgtggatgaccttgaacatgacatgtttctgtgctggaaggatacattttcatctttttttcatcctcttcatagtcatctctcagcagcacattcatttctgaacatgactcattgctagattgtttgacatttgaagttaaaactgctgattctccaacggatgctcctgtctgttgtgaagttgagatgggcatactctcaaatgcataatgtggctcagtgtgtggcaattttccactttcattttctgaagataagagggatgaaggtgagtaatacttggtgaacaagaagtaggactagtccgagaagataccggcttattgaatgacctagacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="66046" stop="64716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65746" g_stop="65016" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E322842" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65746" e_stop="65016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATGCTCGAGACTTTGAGATATGATGTGTTGCTTCACCATTCACAGGTGCAACATCCTTCAATTTTTCTTTAGATGTCCGAAGTGTATCGAACTCTGAGGAAGAACCAACACTAGATCGTTGAGCCTTTGAAGCAACAAATGCAGCTGCATCATCTATTGATCTCGCTGTTGGTTGACTCACTTGGATGGGTGGAGGCTTGACATTCTTGAGTCTCTCATGGTCTTGCTTTCTGGAGTTTGGCATCTCTGGAGAGGAAGAGGATATTGGTGAGATTGTTCTGGGAGAAGAAGAATTGGGAATAATTTGAGCGCGTACACGAGTCCAGAATGACCATGGCTCTTGATGCTCGGACTCAGTTTCTCCAGCAGAGTGGGACTTAGAATGTGGATGACCTTGAACATGACATGTTTCTGTGCTGGAAGGATACATTTTCATCTTTTTTTCATCCTCTTCATAGTCATCTCTCAGCAGCACATTCATTTCTGAACATGACTCATTGCTAGATTGTTTGACATTTGAAGTTAAAACTGCTGATTCTCCAACGGATGCTCCTGTCTGTTGTGAAGTTGAGATGGGCATACTCTCAAATGCATAATGTGGCTCAGTGTGTGGCAATTTTCCACTTTCATTTTCTGAAGAATAAGAGG-ATGAAGGTGAGGTAATACTTGGTGAACAAGAAGTAGGACTAGTCCGAGAGGATACCGGTTTATTGAATGACCTAGACTTG</genome_strand>
        <mrna_strand>TAAATGCTCGAGACTTTGAGATATGATGTGTTGCTTCACCATTCACAGGTGCAACATCCTTCAATTTTTCTTTAGATGTCCGAAGTGTATCGAACTCTGAGGAAGAACCAACACTAGATCGTTGAGCCTTTGAAGCAACAAATGCAGCTGCATCATCTATTGATCTCGCTGTTGGTTGACTCACTTGGATGGGTGGAGGCTTGACATTCTTGAGTCTCTCATGGTCTTGCTTTCTGGAGTTTGGCATCTCTGGAGAGGAAGAGGATATTGGTGAGATTGTTCTGGGAGAAGAAGAATTGGGAATAATTTGAGCGCGTACACGAGTCCAGAATGACCATGGCTCTTGATGCTCGGACTCAGTTTCTCCAGCAGAGTGGGACTTAGAATGTGGATGACCTTGAACATGACATGTTTCTGTGCTGGAAGGATACATTTTCATCTTTTTTTCATCCTCTTCATAGTCATCTCTCAGCAGCACATTCATTTCTGAACATGACTCATTGCTAGATTGTTTGACATTTGAAGTTAAAACTGCTGATTCTCCAACGGATGCTCCTGTCTGTTGTGAAGTTGAGATGGGCATACTCTCAAATGCATAATGTGGCTCAGTGTGTGGCAATTTTCCACTTTCATTTTCTGAAG-ATAAGAGGGATGAAGGTGA-GTAATACTTGGTGAACAAGAAGTAGGACTAGTCCGAGAAGATACCGGCTTATTGAATGACCTAGACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449863" ref_strand="+" ref_description="SGN-E449863 [cSTS-7-B2]">
      <seq>gcaagaccttgagagactcaagaatgtcaagcctccacccatccaagttagtcatccaacagcgagatcaatggatgatgcagctgcatttgttgcttcaaaggctcaacgatctactgttggttcttcctcagagtttgatacacttcgcacatctaaagaaaaactgaaggatgttgcacctgtgaatggtgaagcaacatatcatacctcaaagtctcgagcatttagtattggttcttcttcagaaataaccatgcaggaaagttcaaaagataaattgaagcatgtcagcaaggatcttaaacaggattcttcgtacacacgaaaacaaagtgtcaactccttggtctcggacatgaaacagccatcacctgtgaataattcatcaaggggaaaatcagtcagaacatttagatcccgaagaagttatattgatagatcaaaaagaaaggttgactgtccaaaagaaggtggagacgtaaatgaggtacgttataatcaatttgacacaacatcatccttgaaatgcattaatcgaaaaggggattcaaaaccaccagtcaattccagagaaggcattcttgacaacagtgggccaattccaagctcagcattctttgnaagtgagcctgaagcaaagcaacattttacgaatacagacattgtggaggccaaggagaactcagaatccaaagggaactcagagaccgtgctaaccaatgctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="65217" stop="66506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65517" g_stop="66206" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E449863" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65517" e_stop="66206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGACCATGAGAGACTCAAGAATGTCAAGCCTCCACCCATCCAAGTGAGTCAACCAACAGCGAGATCAATAGATGATGCAGCTGCATTTGTTGCTTCAAAGGCTCAACGATCTAGTGTTGGTTCTTCCTCAGAGTTCGATACACTTCGGACATCTAAAGAAAAATTGAAGGATGTTGCACCTGTGAATGGTGAAGCAACACATCATATCTCAAAGTCTCGAGCATTTAGCATTGGTTCTTCTTCAGAAATAACCATGCAAGAAAGTTCAAAAGATAAATTGGAGCATGTCAATAAGGATCTTAAACAGGATTCTTCGTACACACGAAAACAAAGTGTCAACTCCTTAGTCTCGGACATGAAACAGCAGTCACCTGTGAATAATTCATCAAGGGGAAAATCAGTCAGAACATTTAGATCCCGAAGAAGTTACATTGATAGATCAAAAAGAAAGGTTGATTGTCCAAAAGAAGGTGGAGATGTAAACGAGATACGTTGTAATCAATTTGACACAACATCATCCTTTAAATGCATTAATCGAAAAGGGGATTCAAAACCACCAGTCAATTCTAGAGAAGGCATTATTGACAACAGTGGGCCAATTCCAAGCTCAGCATTCTTTGAAAGTGAGCCTGAAGCAAAGCAACATTTTACGAATACAGACATTATGGAGGCCAAGGGGAACTCAGA</genome_strand>
        <mrna_strand>GCAAGACCTTGAGAGACTCAAGAATGTCAAGCCTCCACCCATCCAAGTTAGTCATCCAACAGCGAGATCAATGGATGATGCAGCTGCATTTGTTGCTTCAAAGGCTCAACGATCTACTGTTGGTTCTTCCTCAGAGTTTGATACACTTCGCACATCTAAAGAAAAACTGAAGGATGTTGCACCTGTGAATGGTGAAGCAACATATCATACCTCAAAGTCTCGAGCATTTAGTATTGGTTCTTCTTCAGAAATAACCATGCAGGAAAGTTCAAAAGATAAATTGAAGCATGTCAGCAAGGATCTTAAACAGGATTCTTCGTACACACGAAAACAAAGTGTCAACTCCTTGGTCTCGGACATGAAACAGCCATCACCTGTGAATAATTCATCAAGGGGAAAATCAGTCAGAACATTTAGATCCCGAAGAAGTTATATTGATAGATCAAAAAGAAAGGTTGACTGTCCAAAAGAAGGTGGAGACGTAAATGAGGTACGTTATAATCAATTTGACACAACATCATCCTTGAAATGCATTAATCGAAAAGGGGATTCAAAACCACCAGTCAATTCCAGAGAAGGCATTCTTGACAACAGTGGGCCAATTCCAAGCTCAGCATTCTTTGNAAGTGAGCCTGAAGCAAAGCAACATTTTACGAATACAGACATTGTGGAGGCCAAGGAGAACTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E423153" ref_strand="+" ref_description="SGN-E423153 [STM-41-H23]">
      <seq>gcaagaccttgagagactcaagaatgtcaagcctccacccatccaagttagtcatccaacagcgagatcaatggatgatgcagctgcatttgttgcttcaaaggctcaacgatctactgttggttcttcctcagagtttgatacacttcgcacatctaaagaaaaactgaaggatgttgcacctgtgaatggtgaagcaacatatcatacctcaaagtctcgagcatttagtattggttcttcttcagaaataaccatgcaggaaagttcaaaagataaattgaagcatgtcagcaaggatcttaaacaggattcttcgtacacacgaaaacaaagtgtcaactccttggtctcggacatgaaacagccatcacctgtgaataattcatcaaggggaaaatcagtcagaacatttagatcccgaagaagttatattgatagatcaaaaagaaaggttgactgtccaaaagaaggtggagacgtaaatgaggtacgttataatcaatttgacacaacatcatccttgaaatgcattaatcgaaaaggggattcaaaaccaccagtcaattccagagaaggcattcttgacaacagtgggccaattccaagctcagcattctttgaaagtgagcctgaagcaaagcaacattttacgaatacagacattgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="65217" stop="66487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65517" g_stop="66187" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E423153" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65517" e_stop="66187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGACCATGAGAGACTCAAGAATGTCAAGCCTCCACCCATCCAAGTGAGTCAACCAACAGCGAGATCAATAGATGATGCAGCTGCATTTGTTGCTTCAAAGGCTCAACGATCTAGTGTTGGTTCTTCCTCAGAGTTCGATACACTTCGGACATCTAAAGAAAAATTGAAGGATGTTGCACCTGTGAATGGTGAAGCAACACATCATATCTCAAAGTCTCGAGCATTTAGCATTGGTTCTTCTTCAGAAATAACCATGCAAGAAAGTTCAAAAGATAAATTGGAGCATGTCAATAAGGATCTTAAACAGGATTCTTCGTACACACGAAAACAAAGTGTCAACTCCTTAGTCTCGGACATGAAACAGCAGTCACCTGTGAATAATTCATCAAGGGGAAAATCAGTCAGAACATTTAGATCCCGAAGAAGTTACATTGATAGATCAAAAAGAAAGGTTGATTGTCCAAAAGAAGGTGGAGATGTAAACGAGATACGTTGTAATCAATTTGACACAACATCATCCTTTAAATGCATTAATCGAAAAGGGGATTCAAAACCACCAGTCAATTCTAGAGAAGGCATTATTGACAACAGTGGGCCAATTCCAAGCTCAGCATTCTTTGAAAGTGAGCCTGAAGCAAAGCAACATTTTACGAATACAGACATTATGG</genome_strand>
        <mrna_strand>GCAAGACCTTGAGAGACTCAAGAATGTCAAGCCTCCACCCATCCAAGTTAGTCATCCAACAGCGAGATCAATGGATGATGCAGCTGCATTTGTTGCTTCAAAGGCTCAACGATCTACTGTTGGTTCTTCCTCAGAGTTTGATACACTTCGCACATCTAAAGAAAAACTGAAGGATGTTGCACCTGTGAATGGTGAAGCAACATATCATACCTCAAAGTCTCGAGCATTTAGTATTGGTTCTTCTTCAGAAATAACCATGCAGGAAAGTTCAAAAGATAAATTGAAGCATGTCAGCAAGGATCTTAAACAGGATTCTTCGTACACACGAAAACAAAGTGTCAACTCCTTGGTCTCGGACATGAAACAGCCATCACCTGTGAATAATTCATCAAGGGGAAAATCAGTCAGAACATTTAGATCCCGAAGAAGTTATATTGATAGATCAAAAAGAAAGGTTGACTGTCCAAAAGAAGGTGGAGACGTAAATGAGGTACGTTATAATCAATTTGACACAACATCATCCTTGAAATGCATTAATCGAAAAGGGGATTCAAAACCACCAGTCAATTCCAGAGAAGGCATTCTTGACAACAGTGGGCCAATTCCAAGCTCAGCATTCTTTGAAAGTGAGCCTGAAGCAAAGCAACATTTTACGAATACAGACATTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712296" ref_strand="+" ref_description="SGN-E712296 [FB04BH01]">
      <seq>gctgactttgaccttgctgatgatgtggatctgggaagtgaggttgatagaaaagctggtgaattcattgccaagttcagagaacagattaggcttcagaaaattgaatcatttcgacggaccagtgcttagttgctaccactctatcttgagggtatatagtgattctagtatgctaaagaaggatgtcttcccttgtttagtggaaactgtgaaaattgatcatttgtttatatgttagcctttctttgtgtaaacaaacacttcgagtgttcttagaaaaaacctgctcaggtgtgtaggagggacaatttcttgcatccttcccttcttggaagagaaatcagcagtctattggaaaactatctttagatgtttccatcattttaactttcattttacacagaattcatgtaaccttgcaattcataattcaagattgtgttcaatttttattttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="65947" stop="67007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66247" g_stop="66714" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E712296" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66247" e_stop="66714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGACTTTGACCTTGCTGATGATGTGGATCTGGGAAGTGAGGTTGATAGAAAAGCTGGTGAATTCATTGCCAAGTTCAGAGAACAGATTAGGCTTCAGAAAATTGAATCATTTCGACGGACCAGTGCTTAGTTGCTACCACTCTATCTTGAGGGTATATAGTGATTCTAGTATGCTAAAGAAGGATGTCTTCCCTTGTTTAGTGGAAACTGTGAAAATTGATCATTTGTTTATATGTTAGCCTTTCTTTGTGTAAACAAACACTTCGAGTGTTCTTAGAAAAAACCTGCTCAGGTGTGTAGGAGGGACAATTTCTTGCATCCTTCCCTTCTTGGAAGAGAAATCAGCAGTCTATTGGAAAACTATCTTTAGATGTTTCCATCATTTTAACTTTCATTTTACACAGAATTCATGTAACCTTGCAATTCATAATTCAAGATTGTGTTCAATTTTTATTTTCATCTAGAT</genome_strand>
        <mrna_strand>GCTGACTTTGACCTTGCTGATGATGTGGATCTGGGAAGTGAGGTTGATAGAAAAGCTGGTGAATTCATTGCCAAGTTCAGAGAACAGATTAGGCTTCAGAAAATTGAATCATTTCGACGGACCAGTGCTTAGTTGCTACCACTCTATCTTGAGGGTATATAGTGATTCTAGTATGCTAAAGAAGGATGTCTTCCCTTGTTTAGTGGAAACTGTGAAAATTGATCATTTGTTTATATGTTAGCCTTTCTTTGTGTAAACAAACACTTCGAGTGTTCTTAGAAAAAACCTGCTCAGGTGTGTAGGAGGGACAATTTCTTGCATCCTTCCCTTCTTGGAAGAGAAATCAGCAGTCTATTGGAAAACTATCTTTAGATGTTTCCATCATTTTAACTTTCATTTTACACAGAATTCATGTAACCTTGCAATTCATAATTCAAGATTGTGTTCAATTTTTATTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552252" ref_strand="+" ref_description="SGN-E552252 [cTSB-3-F15]">
      <seq>cttcccgagacttaaacatcttcacatatcatgtgataaacttgagaagatccccattggcctggctgatatatgcagcctccaagtgatggatttgcgaaattccactaaatcagcagcaaaatctgccagagagatacaagccaaaaaaaacaagctgcaacctgctaaatcccagaagttcgagctttctgtattccctcctgattctgatgtacagacagcttcttagaaaggtctaaaataaccacatgctgcaggttcaaccagcctggttggcgcgcatggtttttgcttcatttggatcactgctttcacagtgaaacctattgcatttcataagtggaacgactgatccacggttttgcaactctttggtttcttactgtatttgatgtgagttcatgttttattgattgtggatgcaatgtgtcatcatagccaaggaataagaaccaaatgtaacgttcaagaaatatcagacattgtttcttataagttataccactctgaattttctccttttagatacaacagcagaacaagtcacttgttctgattcatacacaatttgatcatgtgttattatttaaacagcacttctggttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattcggggggggggggccgggccccccctcccccctaaggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="68708" stop="58280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68408" g_stop="68173" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68172" i_stop="67768" i_length="405">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67767" g_stop="67394" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="610" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67393" i_stop="67201" i_length="193">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67200" g_stop="67151" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="660" r_length="50" r_score="0.580"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67150" i_stop="66577" i_length="574">
            <donor d_prob="0.000" d_score="0.58"/>
            <acceptor a_prob="0.000" a_score="0.48"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66576" g_stop="66533" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="703" r_length="43" r_score="0.477"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E552252" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68408" e_stop="68173"/>
          <exon e_start="67767" e_stop="67394"/>
          <exon e_start="67200" e_stop="67151"/>
          <exon e_start="66576" e_stop="66533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCGAGACTTAAACATCTTCACATATCATGTGATAAACTTGAGAAGATCCCCATTGGCCTGGCTGATATATGCAGCCTCCAAGTGATGGATTTGCGAAATTCCACTAAATCAGCAGCAAAATCTGCCAGAGAGATACAAGCCAAAAAAAACAAGCTGCAACCTGCTAAATCCCAGAAGTTCGAGCTTTCTGTATTCCCTCCTGATTCTGATGTACAGACAGCTTCTTAGAAAGGTTAGTTAAATCTTCCCATAACATCAAACTCTTTGATTTGTGCTTTGTATTCCAAAATAAATGTTTAATTATCTGCTATCTCCCCTTTCCCAAGGAGCCTATGACTTGCTAAAAATACAAGCCAGTAGCATGAGATAGGAGTATCCAGTAACAATTTACACATCATTTGGAATAGTAATCGTAATATCAAATCGTGGTGATAAGCTCATGCATGTTTTCTACATTTGCTATGACAGATGCTTATGAAATTACCTATGGATTTTCCGTTGCATTTTGTAATTATCACACTTTATGGCTTTTGATAAAACTTCAGTTGGTAGTAGCATGTTCCTCCATTTTTCTTGGTTCATATTTTTTTTCCATTGTGACCTATTCGTCACAACTTACACCATGCTATTGGTACAGGTCTAAAATAACCACATGCTGCAGGTTCAACCAGCCTGGTTGGCGCGCATGGTTTTTGCTTCATTTGGATCACTGCTTTCACAGTGAAACCTATTGCATTTCATAAGTGGAACGACTGATCCACGGTTTTGCAACTCTTTGGTTTCTTACTGTATTTGATGTGAGTTCATGTTTTATTGATTGTGGATGCAATGTGTCATCATAGCCAAGGAATAAGAACCAAATGTAACGTTCAAGAAATATCAGACATTGTTTCTTATAAGTTATACCACTCTGAATTTTCTCCTTTTAGATACAACAGCAGAACAAGTCACTTGTTCTGATTCATACACAATTTGATCATGTGTTATTATTTAAACAGCACTTCTGGTTTTTTATTTCCTACTATCATATTTGATTGTGCAGTTGTATTTCCTCAATGGTAATTGCAATGCTTTTTCAAATTATCATTTGTGGGGATAAGGTTTGCGCGTACACCACTCTCCTTATATCTCACTTGTGGGGATTACACTAGGTGTATGTTCTTGTTGTATCGTGTAATCATCTCAACTGCTTACATCTAAGTAGAATACCAAAAAAAAATTTAAAAAAATGACTAGTTACATTATTTACAAGAAATAATCAACTCTAGAAAATACTTCAAAACATGCAGTTTCATCATTCATCAAATTGCTTCTTTCAGCATAGTCTATGTTTATTACAAAATTCAAGTTCATTCATCTGAACAAGCTAATTCAAATTCCAAAAATAGGACTAATGTTTCCCCCCAAAAAAAAATTGCTTTAGACTTTTGAGTTATGTATAAACGCTTCATTTCTGGATTTCGGTATAAAGCCTTTCTTACATTTTATGTATTCATTTAAAACGTTGGATAACATATCTTGAGGATGATAGTCGATAAGAAAATCCAGCATTTAAAGGTGTGGCATAGTGATCGATGAAGTGGATTACGTAAGCCAAAAACGTTCTAGTGATTCCACATTCTTTGACAAAACGGCTTAACATGCAAGGTTACAAGAAAGGGCGTGGATATGTATTTATCTTGAAGAATATATCTAGATGAAAATAAAAATTGAACACAATCTTGAATTATGAATTGCAAGGTTACATGAATTCTGTGTAAAATGAAAGTTAAAATGATGGAAACATCTAAAGATAGTTTTCCAATAGACTGCTGATTTCTCTTCCAAGAAGGGAAGGATGCAAGAAATTGTCCCTCCTACACACCTGAGCAG</genome_strand>
        <mrna_strand>CTTCCCGAGACTTAAACATCTTCACATATCATGTGATAAACTTGAGAAGATCCCCATTGGCCTGGCTGATATATGCAGCCTCCAAGTGATGGATTTGCGAAATTCCACTAAATCAGCAGCAAAATCTGCCAGAGAGATACAAGCCAAAAAAAACAAGCTGCAACCTGCTAAATCCCAGAAGTTCGAGCTTTCTGTATTCCCTCCTGATTCTGATGTACAGACAGCTTCTTAGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................GTCTAAAATAACCACATGCTGCAGGTTCAACCAGCCTGGTTGGCGCGCATGGTTTTTGCTTCATTTGGATCACTGCTTTCACAGTGAAACCTATTGCATTTCATAAGTGGAACGACTGATCCACGGTTTTGCAACTCTTTGGTTTCTTACTGTATTTGATGTGAGTTCATGTTTTATTGATTGTGGATGCAATGTGTCATCATAGCCAAGGAATAAGAACCAAATGTAACGTTCAAGAAATATCAGACATTGTTTCTTATAAGTTATACCACTCTGAATTTTCTCCTTTTAGATACAACAGCAGAACAAGTCACTTGTTCTGATTCATACACAATTTGATCATGTGTTATTATTTAAACAGCACTTCTGGTTTT.................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGGGGGGGGGGGGCCGGGCCCCCCCT-CCCCCCTAAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212407" ref_strand="+" ref_description="SGN-E212407 [cLEC-74-H21]">
      <seq>atgagttatgatgttttgccttatgactggaaagcttgctttttatacttcggtacattccccagaggctatttaatccctgccaggaaattgatccgcttatggatcgcggaagggtttatccagtacagaggggacttatcccctgagtgtaaagcagaggagtacttgaatgaactcgtaaatagaaacttagtgatggtaatgcaaaggacggttgatggacaaatcaaaacttgtcgtgttcatgacatgttgtatgagttttgctggcaagaggctacgacagaggaaaatcttttccatgaagtaaaattcggtggtgagcaatctgttcgtgaagtatccactcatcgtcgcttgtgcattcattcctctggtgtggagttcatttctaagaagccctctggtgagcatgttaagtcgttcctatgtttttctccagaaaaaattgacactcccccaactgtcagtgcaaacatatcaaaagcctttccattgctaagggtgtttgatactgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="69952" stop="68829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69652" g_stop="69129" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E212407" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69652" e_stop="69129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGTTATGATGTTTTGCCTTATGACTGGAAAGCTTGCTTTTTATACTTCGGTACATTCCCCAGAGGCTATTTAATCCCTGCCAGGAAATTGATCCGCTTATGGATCGCGGAAGGGTTTATCCAGTACAGAGGGGACTTATCCCCTGAGTGTAAAGCAGAGGAGTACTTGAATGAACTCGTAAATAGAAACTTAGTGATGGTAATGCAAAGGACGGTTGATGGACAAATCAAAACTTGTCGTGTTCATGACATGTTGTATGAGTTTTGCTGGCAAGAGGCTACGACAGAGGAAAATCTTTTCCATGAAGTAAAATTCGGTGGTGAGCAATCTGTTCGTGAAGTATCCACTCATCGTCGCTTGTGCATTCATTCCTCTGTTGTGGAGTTCATTTCTAAGAAGCCCTCTGGTGAGCATGTTAGGTCGTTCCTATGTTTTTCTCCAGAAAAAATTGACACTCCCCCAACTGTCAGTGCAAACATATCAAAAGCCTTTCCATTGCTAAGGGTGTTTGATACTGAATC</genome_strand>
        <mrna_strand>ATGAGTTATGATGTTTTGCCTTATGACTGGAAAGCTTGCTTTTTATACTTCGGTACATTCCCCAGAGGCTATTTAATCCCTGCCAGGAAATTGATCCGCTTATGGATCGCGGAAGGGTTTATCCAGTACAGAGGGGACTTATCCCCTGAGTGTAAAGCAGAGGAGTACTTGAATGAACTCGTAAATAGAAACTTAGTGATGGTAATGCAAAGGACGGTTGATGGACAAATCAAAACTTGTCGTGTTCATGACATGTTGTATGAGTTTTGCTGGCAAGAGGCTACGACAGAGGAAAATCTTTTCCATGAAGTAAAATTCGGTGGTGAGCAATCTGTTCGTGAAGTATCCACTCATCGTCGCTTGTGCATTCATTCCTCTGGTGTGGAGTTCATTTCTAAGAAGCCCTCTGGTGAGCATGTTAAGTCGTTCCTATGTTTTTCTCCAGAAAAAATTGACACTCCCCCAACTGTCAGTGCAAACATATCAAAAGCCTTTCCATTGCTAAGGGTGTTTGATACTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547025" ref_strand="+" ref_description="SGN-E547025 [TUS-70-L3](-)">
      <seq>caaagtgaatcaaattttcgtcctaaattttagttgttttcctttttttttcctatttcaacaattgtatatgtattgtgtttcttatgttttttcatatttttttgatgaaataatcgattgtttgttcttattagatctcaaattagtcacagaatgaatgaatcatcttcatctatgaggattatcacagggtctatggtaaaatcaaaacaagttcaacatgaacaaacaatggaagaattgagatcaaagaaaaaaatatgaccctacggcagttcaagaagttattaacaatgctaaatctagaggcattaaaattgtacaaggaggaagaaagaggaaagcaacattgattcagaggaaaatgcatgtgaagttgacggatctgaagaacatcataattatgaggtagtggcttaaaacacaaatttagatacaatttttttgttacttagatgtcaatatacaaaaaattattgtttaagtaaattttgtattcacgtaattgtatatagtatattgcatgtttagtacacacaagttttagttatatatttgtatatgtgtctgaggatttgattactttatacatactttaagttatgtataatgaataatatactaagtcttaatagtggtagtagcagcattgtatattaaaggctcattattatttttgtttttgtatatatatacaaaaagtaattggacttagttatacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="73816" stop="75224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74126" g_stop="74299" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="193" r_length="173" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74300" i_stop="74380" i_length="81">
            <donor d_prob="0.841" d_score="0.92"/>
            <acceptor a_prob="0.875" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74381" g_stop="74925" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="736" r_length="543" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E547025" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74126" e_stop="74299"/>
          <exon e_start="74381" e_stop="74925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAAATTTTAGTCGTTTTCCTTATTTTTTTTCTTATTCAAAAATTGTATATGTATTGTGTTTCTTATGTTTTTTCATATTTTTTTGATGAAATAATCGATTGTTTGTTTTTATTAGATCTCAAATTAGCCACAAAATGAATGAATCATCTTCATCTATGAGGATTACCAGAGGTATTTCATTGCATGTCAATTTTGTTGACAATTTACCATCATTTTCAATGGGTTTAACTCAAGATTTTGGGGTTGATGTAGGGTCTATAGTAAAATCAAAATAAGTTCAACATGAACAAACAATGGAAGAATTGAGATCAAAG-AAAAAATATGACCCTACGGTAGTTCAAGAAGTTATTAACAATGCTAAAGCTAGAGGCATTAAAATTGTACAAGGAGGAAGAAAGAGGAAAGCAGTAAACATTGATTCAGAGGAAAATGCATGTGAAGTTGACAGATCTGAAGAACATCATAATCATGAGGTAGTGGCTTAAAACACAAATTTAGATACAATTTTTTTGTTACTTAGATGTCAATAAACAAAAAATTATTGTTTAAGTAAATTTTGTATTCACATAATTGTATATAGTATATTGCATGTTTAGTACATACATGTTTTAGTTATATATTTGTATATGTGTCTGTAGATTTGATTACTTTATACATACTTTAAGTTATGTATAATGAATAATATACTAAGTCTTAATAGTGGTAGTAGCA-AATTGTATATTAAAGGCTCATTATTATTTTTGTTTTTGTATATATATACAAAAAGTAATTGGACTTAGTTATACAGATGAAAAAAT</genome_strand>
        <mrna_strand>TCCTAAATTTTAGTTGTTTTCCTT-TTTTTTTCCTATTTCAACAATTGTATATGTATTGTGTTTCTTATGTTTTTTCATATTTTTTTGATGAAATAATCGATTGTTTGTTCTTATTAGATCTCAAATTAGTCACAGAATGAATGAATCATCTTCATCTATGAGGATTATCACAG.................................................................................GGTCTATGGTAAAATCAAAACAAGTTCAACATGAACAAACAATGGAAGAATTGAGATCAAAGAAAAAAATATGACCCTACGGCAGTTCAAGAAGTTATTAACAATGCTAAATCTAGAGGCATTAAAATTGTACAAGGAGGAAGAAAGAGGAAAGC----AACATTGATTCAGAGGAAAATGCATGTGAAGTTGACGGATCTGAAGAACATCATAATTATGAGGTAGTGGCTTAAAACACAAATTTAGATACAATTTTTTTGTTACTTAGATGTCAATATACAAAAAATTATTGTTTAAGTAAATTTTGTATTCACGTAATTGTATATAGTATATTGCATGTTTAGTACACACAAGTTTTAGTTATATATTTGTATATGTGTCTGAGGATTTGATTACTTTATACATACTTTAAGTTATGTATAATGAATAATATACTAAGTCTTAATAGTGGTAGTAGCAGCATTGTATATTAAAGGCTCATTATTATTTTTGTTTTTGTATATATATACAAAAAGTAATTGGACTTAGTTATACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="81723" stop="82721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82022" g_stop="82422" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82022" e_stop="82422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTCGGTGGAGGTAGGTTATGGTTT-TC--ATGCT-TTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATGGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAAAATTAGGGGATCGGGTGTCACGAACCGACACGTAGTTTTAGGGGATCGGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATA-TAAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="82248" stop="83086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82548" g_stop="82786" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82548" e_stop="82786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAATATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAGTTTGACGGTAATTGTTAATGATATAGTATTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="82249" stop="83327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82549" g_stop="83027" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82549" e_stop="83027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAATATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAGTTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724489" ref_strand="+" ref_description="SGN-E724489 [FC24BA09]">
      <seq>aatcggccgaattaacagtattgccattggacgagaaggaggtgtggcgccacttatagcacttgcacgatctgatgttgaggatgtccatgagactgcagctggggctctctggaatcttgctttcaaccctggtaatgctttccgtatagtggaggaagggggagttcctgcccttgttcatctttgttcgtcatctatctcaaaaatggcacgctttatggctgcattggcgttggcttatatgtttgatggaagaatggatggagttgcagttgtgggaacctcttcaaaaagcaactctaagagtgtaaacttagatggagctcgaaaaatggctttaaagaacattgaagcttttattcttgcattttctgatccacaagcattttctgctgctgctgcgtcatctgtccctgcagctttgactcaagttacagaatcagctcgtattcatgaggcaggtcatcttaggtgcagtggagctgaaatcggcagattcgttacaatgttacgtaattcgtcttctattctgaaagcatgtgctgcatttgcccttcttcagttcacaatccctggtggtcgtcatgcacaacatcatgtccgcctattgcaaaacactggagcatcaaggattttgcgtgctgctgctgcagcagccactgcccctattgaagccaaaatctttgctcgaatcgtacttcggaacttggagcaccatcaaatagaatcctcaacttaaggcctggtgactactagtagtaatcgtaggccgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="98430" stop="102708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98735" g_stop="98798" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="82" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98799" i_stop="100098" i_length="1300">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100099" g_stop="100274" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="258" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100275" i_stop="101347" i_length="1073">
            <donor d_prob="0.185" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101348" g_stop="101569" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="480" r_length="222" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101570" i_stop="102013" i_length="444">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102014" g_stop="102098" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="565" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102099" i_stop="102195" i_length="97">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102196" g_stop="102408" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="778" r_length="213" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E724489" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98735" e_stop="98798"/>
          <exon e_start="100099" e_stop="100274"/>
          <exon e_start="101348" e_stop="101569"/>
          <exon e_start="102014" e_stop="102098"/>
          <exon e_start="102196" e_stop="102408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGCCATTGGACGAGAAGGAGGTGTGGCGCCACTTATAGCACTTGCACGATCTGATGTTGAGGTAAATCTTTGTGCAATGATGTATAGAAATGTTTTTCCATGCCTGCCTGGTTGTTGCTCTTTTTCAGCTTTCCACAACTTGTGAAAGCTTAATTTGTTAATTATAGTTTCTGCTATTGAACTATCTCATCTTCCTCGAATTGTAATTGAATTGGGTCCTTGTATATGTTTTTAATTCCTGCTTAACATAGCCATATTAATTTTGTTTCAGAACAGATTGTAAATTCTGAATACAGATCTGAGAGCTAGAAAGCTTATACAGGGAGATCCGACCTGTGGATCTCAGTTGCCATTACCTAGCAATTATGTTACTACTAAATGTGGCACCTCAACATGGTCTGCTAAAAACATGGGCACACATTTACCAGAACTTCTTTTGGATATTAACAGTTGTGACTTTATGTTACTCAAAGGGAAACTAGATAACTATTTCTGTATATAATGTTGTACCATTACTAGGTAAATTCATTCCATTTTCCAGGGGGGGGGGGGGAATTTAGACAGAGTTAGCTAGCTTTTCAAGCTTAAAAAGAAGAACTAACCAGCCTGTCCAATGATGGTTAGGCTTAATAAAAATATATTCTACAGAGTTGCGTAGTTTAGAAAGTAAATCTAGGATAATCTTCTTGACCTATAGGGTTTATTTTAGGCTTAAACCCTTCCATGTCATGCTTCATCAGAAAAAATAAATAAAATATTTCCTTCCACGGCATATTGGCTAGTGGAGCTTTCTCAGACTCCACCTTAAAAGTACTAAACCATCAAGTCACAAAATCTGCAAGTTGGTCGTAGTTTCAATAACGTCTTTCACATAATTTCTGGGTCTTTCACATAATTTCTGAATATAGTCTTGTTAATCTGCCATATTTAGTTGTAGCATGTATTTGACATTTGTTCATGTACCTGCAAGTTGTTTTACCTGGCGGTGCAATGTTAATGATGCCTTATGTATTTATACATACTATCCTTTTCTGGGATATAAAACTATTATGTGAAGCCACAGATCTGTTGATTGGCATGTAATGACAACTGTATCACATTGAATCATATAAGTTTTTCTGCCTTCTGGAATACTAGTGTATTTATTTTGAGAAATAAGTATGAGTAAAAATATTATCCTTTTTCTGGGATACAAAATTAATATGTGAAGCCATAGTTCTGTTGATTGGCATGTGATGACAAATGCATCGCTTTGAATCATATAAGATTTTCTGCCTTCTGGAATACGAGTTTAATTATTTTTGGGAAATAAGTATGAGTATATTTACGATTGTACATTCCTAAATTTTCCCTCTTTCCAGGATGTCCATGAGACTGCAGCTGGGGCTCTCTGGAATCTTGCTTTCAACCCTGGTAATGCTTTCCGTATAGTGGAGGAAGGGGGAGTTCCTGCCCTTGTTCATCTTTGTTCGTCATCTATCTCAAAAATGGCACGCTTTATGGCTGCATTGGCGTTGGCTTATATGTTTGATGGAAGGTACTTGGCAATGTCTTCATCCATGAATATTATTCTAAACAGCACCGTAAACTAAATATTGAATGCTATTTAGTATAGATTTATTGATACAATTTTCTCTTGATTTTTCCAGAACAACCGTCTTAGAATGATACTTTCTTTTCCAGAATTCATTTATTTCTGGCATTCTTCTCATTATATTTATTAATCCAACCTAGCTTTAGCTGTTTCAAAGGAGATAACTAATTGAAGCGAGGTTTCTTCATCTCTTACTATGCTTAACAAGAATGTAGTTATCATTCTCCCTCAAGTGTCTGAGCTGTTTAAGATGGAGGAATAGGTCAATTGTTAATCGAACATTTTACTTTTGAATGTAGTTATTTTATCAGTTGCAGTTACTGGCAGACATTTGTAGAGAAAATGACTCCCTCAGCAGCACAAGTTTTCTTATCTCACGACTAAAAAAAACTTCAGTGTAAATATTGGTTTGAGGGAACTACTTGATTCATTTGGATGTAATTTTTTTGCTTGAATGGGGATTAATATGCCGTGGAGGAGTTCAAGGGCATTTAGTTAACTTTTACTGGTTGTAACCTGTGTAGGTTTGATGACTTGTGGAGATAGAGAAGCTTGCTTTTCTTGTGATAAATCTCATGGGACAATCACATATGCTCCTTTTTTTTTTTTTTGAGAAGTTCTTATGTTCATGGGTACCTACTCCATGGGACCTCCAAACAAAAACTCTCGTAATTGGATTTGTGAGGAATTTAGCTAAAATCGTTAAACGACAACTGCTTCTCTATGGGTGTTTGCAAAGGGAAAAGAAAGTTGAACACTGGTTTCTGCGATGTTCTCTCTTATCAAAGAGAAAAAGATTCAATTGAGGGATTTTCTTTTGATGAAGCAAGAATTAATATTAAAAGCATCAAGAAGATGCAAAAGCACTGTACAGCTGCTGTTACAAAAGTGAGATTGAGAGCTCTATTACGGAAGTCTGTGCTAGAAATGATTGACGCATTCTTGAACATTGTTGCATTCTTTCCTTGCATGTTTCTGTCTGAGTAGAAGTTAAAATGTGATTTTCCTTTTAACAGAATGGATGGAGTTGCAGTTGTGGGAACCTCTTCAGAAAGCAACTCTAAGAGTGTAAACTTAGATGGAGCTCGAAGAATGGCTTTAAAGAACATTGAAGCTTTTATTCTTGCATTTTCTGATCCACAAGCATTTTCTGCTGCTGCTGCGTCATCTGTCCCTGCAGCTTTGACTCAAGTTACAGAATCAGCTCGTATTCATGAGGCAGGTCATCTTAGGTGCAGGTATGAATGTTGTCCCCCCACCCTTCCTTTCCCATCCTTTAATCTAATGTGTACTGATAAGAATGTCTTATAAACTTAAACTCACTTATCATAATAAAAATCCTACATCATGTCTGTAATTTATTGTATGGGCTGTGTACGACATTCACTGTCTGATAAAGACCTGTTTCTTGCTTATTGAAACTTCAAGGGCTTATGCCTATGTATTTCATGGGGAAGAAACATGGAAATGTTACTGAGTCGGATTTATGAAATTCAACACATTGCTTCATCTTCATTTCTTTGTGCAAGATTGAATAGGTGGTGCTTAGCTGTTTTAGCAACTCTCCCTGGGTCCCAAATATTCTCTCTTTCCTTGTTGAATTTCGTCTTTTATCCCCTCGTTAATATTCTTATATATCCTTCTGCCTATTTATTAATAATTTTTCTTAATTGCCTCTTCAGTGGAGCTGAGATCGGCAGATTCGTTACAATGTTACGTAATTCGTCTTCTATTCTGAAAGCATGTGCTGCATTTGCCCTTCTTCAGGTAGGTGGTTTTCTGTGTGGCACTGACATTCTTCTGATATCAGTTTTTTCAACTTGAACTGGCAACCTAACTGATCTCGTGTTTTCCTATGTTGTAGTTCACAATCCCTGGTGGTCGTCATGCACAACATCATGTCCGCCTATTGCAGAACACTGGAGCATCAAGGATTTTGCGTGCTGCTGCTGCAGCAGCCACTGCCCCTATTGAAGCCAAAATCTTTGCTCGAATCGTACTTCGGAACTTGGAGCACCATCAAATAGAATCCTCAACTTAAGGCCTGGTGACTACTAGTAGTAATCGTAGGCCGTAC</genome_strand>
        <mrna_strand>TATTGCCATTGGACGAGAAGGAGGTGTGGCGCCACTTATAGCACTTGCACGATCTGATGTTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCCATGAGACTGCAGCTGGGGCTCTCTGGAATCTTGCTTTCAACCCTGGTAATGCTTTCCGTATAGTGGAGGAAGGGGGAGTTCCTGCCCTTGTTCATCTTTGTTCGTCATCTATCTCAAAAATGGCACGCTTTATGGCTGCATTGGCGTTGGCTTATATGTTTGATGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATGGAGTTGCAGTTGTGGGAACCTCTTCAAAAAGCAACTCTAAGAGTGTAAACTTAGATGGAGCTCGAAAAATGGCTTTAAAGAACATTGAAGCTTTTATTCTTGCATTTTCTGATCCACAAGCATTTTCTGCTGCTGCTGCGTCATCTGTCCCTGCAGCTTTGACTCAAGTTACAGAATCAGCTCGTATTCATGAGGCAGGTCATCTTAGGTGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTGAAATCGGCAGATTCGTTACAATGTTACGTAATTCGTCTTCTATTCTGAAAGCATGTGCTGCATTTGCCCTTCTTCAG.................................................................................................TTCACAATCCCTGGTGGTCGTCATGCACAACATCATGTCCGCCTATTGCAAAACACTGGAGCATCAAGGATTTTGCGTGCTGCTGCTGCAGCAGCCACTGCCCCTATTGAAGCCAAAATCTTTGCTCGAATCGTACTTCGGAACTTGGAGCACCATCAAATAGAATCCTCAACTTAAGGCCTGGTGACTACTAGTAGTAATCGTAGGCCGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549355" ref_strand="+" ref_description="SGN-E549355 [TUS-69-K12]">
      <seq>ctctaagagtgtaaacttagagttgctttctgaagaggttcccacaagtgcaactctaagagtgtaaacttagatggagctcgaagaatggctttaaagaacattgaagcttttattcttgcattttctgatccacaagcattttctgctgctgctgcgtcatctgtccctgcagctttgactcaagttacagaatcagctcgtattcatgaggcaggtcatcttaggtgcagtggagctgagatcggaagattcgttacaatgttacgtaattcgtcttctattctcaaagcatgtgctgcatttgcgcttcttcagttcacaatccctggtggtcgtcatgcacaacatcatgtccgcctattgcagaacactggagcatcaaggattctgcgtgctgctgctgcagcagccactgcccctattgaagccaaaatctttgctcgaatcgtacttcggaacttggagcaccatcaaatagaatcctcaacttaaggcctggtgactactagtagtaatcctaggccgtactcagcaatagtgataggtatccgtatactcccgtcagtgacattgacattaagctgccagtttgtgttagcataccaaaactaacggtgctggcttttgggaagaagcaaaggcttcttatttttctacccaaacgtctgcctgtgttgggtttcttttagcttcctttcttgggcacataggctgtgtgatatttccgcccttctgttagttattctctcttgtctgtttgagcttaggcttgatagatctattgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="101080" stop="102967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101387" g_stop="101569" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="233" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101570" i_stop="102013" i_length="444">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102014" g_stop="102098" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="318" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102099" i_stop="102195" i_length="97">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102196" g_stop="102667" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="790" r_length="472" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E549355" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101387" e_stop="101569"/>
          <exon e_start="102014" e_stop="102098"/>
          <exon e_start="102196" e_stop="102667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCTAAGAGTGTAAACTTAGATGGAGCTCGAAGAATGGCTTTAAAGAACATTGAAGCTTTTATTCTTGCATTTTCTGATCCACAAGCATTTTCTGCTGCTGCTGCGTCATCTGTCCCTGCAGCTTTGACTCAAGTTACAGAATCAGCTCGTATTCATGAGGCAGGTCATCTTAGGTGCAGGTATGAATGTTGTCCCCCCACCCTTCCTTTCCCATCCTTTAATCTAATGTGTACTGATAAGAATGTCTTATAAACTTAAACTCACTTATCATAATAAAAATCCTACATCATGTCTGTAATTTATTGTATGGGCTGTGTACGACATTCACTGTCTGATAAAGACCTGTTTCTTGCTTATTGAAACTTCAAGGGCTTATGCCTATGTATTTCATGGGGAAGAAACATGGAAATGTTACTGAGTCGGATTTATGAAATTCAACACATTGCTTCATCTTCATTTCTTTGTGCAAGATTGAATAGGTGGTGCTTAGCTGTTTTAGCAACTCTCCCTGGGTCCCAAATATTCTCTCTTTCCTTGTTGAATTTCGTCTTTTATCCCCTCGTTAATATTCTTATATATCCTTCTGCCTATTTATTAATAATTTTTCTTAATTGCCTCTTCAGTGGAGCTGAGATCGGCAGATTCGTTACAATGTTACGTAATTCGTCTTCTATTCTGAAAGCATGTGCTGCATTTGCCCTTCTTCAGGTAGGTGGTTTTCTGTGTGGCACTGACATTCTTCTGATATCAGTTTTTTCAACTTGAACTGGCAACCTAACTGATCTCGTGTTTTCCTATGTTGTAGTTCACAATCCCTGGTGGTCGTCATGCACAACATCATGTCCGCCTATTGCAGAACACTGGAGCATCAAGGATTTTGCGTGCTGCTGCTGCAGCAGCCACTGCCCCTATTGAAGCCAAAATCTTTGCTCGAATCGTACTTCGGAACTTGGAGCACCATCAAATAGAATCCTCAACTTAAGGCCTGGTGACTACTAGTAGTAATCGTAGGCCGTACTCAGCAATAGTGATAGGTATCCGTATACTCCCGTCAGTGACATTGACATTAAGCTGCCAGTTTGTGTTAGCATACCAAAACTAACGGTGCTGGCTTTTGGGAAGAAGCAAAGGCTTCTTATTTTTCTACCCAAACGTCTGCCTGTGTTGGGTTTCTTTTAGCTTCCTTTCTTGGGTACATAGGCTGTGTGATATTTCCGCCCTTATGTTAGTTATTCTCGCTTGTCTCTTTGAGCTTAGGCTTGATAGATCTATTGACA</genome_strand>
        <mrna_strand>CAACTCTAAGAGTGTAAACTTAGATGGAGCTCGAAGAATGGCTTTAAAGAACATTGAAGCTTTTATTCTTGCATTTTCTGATCCACAAGCATTTTCTGCTGCTGCTGCGTCATCTGTCCCTGCAGCTTTGACTCAAGTTACAGAATCAGCTCGTATTCATGAGGCAGGTCATCTTAGGTGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTGAGATCGGAAGATTCGTTACAATGTTACGTAATTCGTCTTCTATTCTCAAAGCATGTGCTGCATTTGCGCTTCTTCAG.................................................................................................TTCACAATCCCTGGTGGTCGTCATGCACAACATCATGTCCGCCTATTGCAGAACACTGGAGCATCAAGGATTCTGCGTGCTGCTGCTGCAGCAGCCACTGCCCCTATTGAAGCCAAAATCTTTGCTCGAATCGTACTTCGGAACTTGGAGCACCATCAAATAGAATCCTCAACTTAAGGCCTGGTGACTACTAGTAGTAATCCTAGGCCGTACTCAGCAATAGTGATAGGTATCCGTATACTCCCGTCAGTGACATTGACATTAAGCTGCCAGTTTGTGTTAGCATACCAAAACTAACGGTGCTGGCTTTTGGGAAGAAGCAAAGGCTTCTTATTTTTCTACCCAAACGTCTGCCTGTGTTGGGTTTCTTTTAGCTTCCTTTCTTGGGCACATAGGCTGTGTGATATTTCCGCCCTTCTGTTAGTTATTCTCTCTTGTCTGTTTGAGCTTAGGCTTGATAGATCTATTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358105" ref_strand="+" ref_description="SGN-E358105 [cLHT-23-L3]">
      <seq>tctaagagtgtaaacttagagttgctttctgaagaggttcccacaagtgcaactctaagagtgtaaacttagatggagctcgaagaatggctttaaagaacattgaagcttttattcttgcattttctgatccacaagcattttctgctgctgctgcgtcatctgtccctgcagctttgactcaagttacagaatcagctcgtattcatgaggcaggtcatcttaggtgcagtggagctgagatcggaagattcgttacaatgttacgtaattcgtcttctattctcaaagcatgtgctgcatttgcgcttcttcagttcacaatccctggtggtcgtcatgcacaacatcatgtccgcctattgcagaacactggagcatcaaggattctgcgtgctgctgctgcagcagccactgcccctattgaagccaaaatctttgctcgaatcgtacttcggaacttggagcaccatcaaatagaatcctcaacttaaggcctggtgactactagtagtaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="101080" stop="102697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101387" g_stop="101569" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="232" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101570" i_stop="102013" i_length="444">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102014" g_stop="102098" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="317" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102099" i_stop="102195" i_length="97">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102196" g_stop="102397" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="519" r_length="202" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E358105" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101387" e_stop="101569"/>
          <exon e_start="102014" e_stop="102098"/>
          <exon e_start="102196" e_stop="102397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCTAAGAGTGTAAACTTAGATGGAGCTCGAAGAATGGCTTTAAAGAACATTGAAGCTTTTATTCTTGCATTTTCTGATCCACAAGCATTTTCTGCTGCTGCTGCGTCATCTGTCCCTGCAGCTTTGACTCAAGTTACAGAATCAGCTCGTATTCATGAGGCAGGTCATCTTAGGTGCAGGTATGAATGTTGTCCCCCCACCCTTCCTTTCCCATCCTTTAATCTAATGTGTACTGATAAGAATGTCTTATAAACTTAAACTCACTTATCATAATAAAAATCCTACATCATGTCTGTAATTTATTGTATGGGCTGTGTACGACATTCACTGTCTGATAAAGACCTGTTTCTTGCTTATTGAAACTTCAAGGGCTTATGCCTATGTATTTCATGGGGAAGAAACATGGAAATGTTACTGAGTCGGATTTATGAAATTCAACACATTGCTTCATCTTCATTTCTTTGTGCAAGATTGAATAGGTGGTGCTTAGCTGTTTTAGCAACTCTCCCTGGGTCCCAAATATTCTCTCTTTCCTTGTTGAATTTCGTCTTTTATCCCCTCGTTAATATTCTTATATATCCTTCTGCCTATTTATTAATAATTTTTCTTAATTGCCTCTTCAGTGGAGCTGAGATCGGCAGATTCGTTACAATGTTACGTAATTCGTCTTCTATTCTGAAAGCATGTGCTGCATTTGCCCTTCTTCAGGTAGGTGGTTTTCTGTGTGGCACTGACATTCTTCTGATATCAGTTTTTTCAACTTGAACTGGCAACCTAACTGATCTCGTGTTTTCCTATGTTGTAGTTCACAATCCCTGGTGGTCGTCATGCACAACATCATGTCCGCCTATTGCAGAACACTGGAGCATCAAGGATTTTGCGTGCTGCTGCTGCAGCAGCCACTGCCCCTATTGAAGCCAAAATCTTTGCTCGAATCGTACTTCGGAACTTGGAGCACCATCAAATAGAATCCTCAACTTAAGGCCTGGTGACTACTAGTAGTAATC</genome_strand>
        <mrna_strand>CAACTCTAAGAGTGTAAACTTAGATGGAGCTCGAAGAATGGCTTTAAAGAACATTGAAGCTTTTATTCTTGCATTTTCTGATCCACAAGCATTTTCTGCTGCTGCTGCGTCATCTGTCCCTGCAGCTTTGACTCAAGTTACAGAATCAGCTCGTATTCATGAGGCAGGTCATCTTAGGTGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTGAGATCGGAAGATTCGTTACAATGTTACGTAATTCGTCTTCTATTCTCAAAGCATGTGCTGCATTTGCGCTTCTTCAG.................................................................................................TTCACAATCCCTGGTGGTCGTCATGCACAACATCATGTCCGCCTATTGCAGAACACTGGAGCATCAAGGATTCTGCGTGCTGCTGCTGCAGCAGCCACTGCCCCTATTGAAGCCAAAATCTTTGCTCGAATCGTACTTCGGAACTTGGAGCACCATCAAATAGAATCCTCAACTTAAGGCCTGGTGACTACTAGTAGTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546340" ref_strand="+" ref_description="SGN-E546340 [TUS-69-K12](-)">
      <seq>gatccacaagcattttctgctgctgctgcgtcatctgtccctgcagctttgactcaagttacagaatcagctcgtattcatgaggcaggtcatcttaggtgcagtggagctgagatcggaagattcgttacaatgttacgtaattcgtcttctattctcaaagcatgtgctgcatttgcgcttcttcagttcacaatccctggtggtcgtcatgcacaacatcatgtccgcctattgcagaacactggagcatcaaggattctgcgtgctgctgctgcagcagccactgcccctattgaagccaaaatctttgctcgaatcgtacttcggaacttggagcaccatcaaatagaatcctcaacttaaggcctggtgactactagtagtaatcctaggccgtactcagcaatagtgataggtatccgtatactcccgtcagtgacattgacattaagctgccagtttgtgttagcataccaaaactaacggtgctggcttttgggaagaagcaaaggcttcttatttttctacccaaacgtctgcctgtgttgggtttcttttagcttcctttcttgggcacataggctgtgtgatatttccgcccttctgttagttattctctcttgtctgtttgagcttaggcttgatagatctattgacagtgtgttatatagttccgaagtccagttactttcggattctgtatttaatttacctggcagatggttttatacctgtacattatatagctgcagagtcgtcggcatgctgacaatttctgtacaaaccgttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="101166" stop="103071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101466" g_stop="101569" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101570" i_stop="102013" i_length="444">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102014" g_stop="102098" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="189" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102099" i_stop="102195" i_length="97">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102196" g_stop="102812" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="803" r_length="614" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E546340" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101466" e_stop="101569"/>
          <exon e_start="102014" e_stop="102098"/>
          <exon e_start="102196" e_stop="102812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCACAAGCATTTTCTGCTGCTGCTGCGTCATCTGTCCCTGCAGCTTTGACTCAAGTTACAGAATCAGCTCGTATTCATGAGGCAGGTCATCTTAGGTGCAGGTATGAATGTTGTCCCCCCACCCTTCCTTTCCCATCCTTTAATCTAATGTGTACTGATAAGAATGTCTTATAAACTTAAACTCACTTATCATAATAAAAATCCTACATCATGTCTGTAATTTATTGTATGGGCTGTGTACGACATTCACTGTCTGATAAAGACCTGTTTCTTGCTTATTGAAACTTCAAGGGCTTATGCCTATGTATTTCATGGGGAAGAAACATGGAAATGTTACTGAGTCGGATTTATGAAATTCAACACATTGCTTCATCTTCATTTCTTTGTGCAAGATTGAATAGGTGGTGCTTAGCTGTTTTAGCAACTCTCCCTGGGTCCCAAATATTCTCTCTTTCCTTGTTGAATTTCGTCTTTTATCCCCTCGTTAATATTCTTATATATCCTTCTGCCTATTTATTAATAATTTTTCTTAATTGCCTCTTCAGTGGAGCTGAGATCGGCAGATTCGTTACAATGTTACGTAATTCGTCTTCTATTCTGAAAGCATGTGCTGCATTTGCCCTTCTTCAGGTAGGTGGTTTTCTGTGTGGCACTGACATTCTTCTGATATCAGTTTTTTCAACTTGAACTGGCAACCTAACTGATCTCGTGTTTTCCTATGTTGTAGTTCACAATCCCTGGTGGTCGTCATGCACAACATCATGTCCGCCTATTGCAGAACACTGGAGCATCAAGGATTTTGCGTGCTGCTGCTGCAGCAGCCACTGCCCCTATTGAAGCCAAAATCTTTGCTCGAATCGTACTTCGGAACTTGGAGCACCATCAAATAGAATCCTCAACTTAAGGCCTGGTGACTACTAGTAGTAATCGTAGGCCGTACTCAGCAATAGTGATAGGTATCCGTATACTCCCGTCAGTGACATTGACATTAAGCTGCCAGTTTGTGTTAGCATACCAAAACTAACGGTGCTGGCTTTTGGGAAGAAGCAAAGGCTTCTTATTTTTCTACCCAAACGTCTGCCTGTGTTGGGTTTCTTTTAGCTTCCTTTCTTGGGTACATAGGCTGTGTGATATTTCCGCCCTTATGTTAGTTATTCTCGCTTGTCTCTTTGAGCTTAGGCTTGATAGATCTATTGACAGTGTGTTCTATAGTTCCGAAGTCCAGTTACTTTCGGATTCTGTATTTAATTTACCTGGCAGATGGTTTTATACCTGTACATTATATAGCTGCAGAGACGTCGTCGGCATGCTGACAATTTCTGTACAAACCGTTTGGGAAAAAAT</genome_strand>
        <mrna_strand>GATCCACAAGCATTTTCTGCTGCTGCTGCGTCATCTGTCCCTGCAGCTTTGACTCAAGTTACAGAATCAGCTCGTATTCATGAGGCAGGTCATCTTAGGTGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTGAGATCGGAAGATTCGTTACAATGTTACGTAATTCGTCTTCTATTCTCAAAGCATGTGCTGCATTTGCGCTTCTTCAG.................................................................................................TTCACAATCCCTGGTGGTCGTCATGCACAACATCATGTCCGCCTATTGCAGAACACTGGAGCATCAAGGATTCTGCGTGCTGCTGCTGCAGCAGCCACTGCCCCTATTGAAGCCAAAATCTTTGCTCGAATCGTACTTCGGAACTTGGAGCACCATCAAATAGAATCCTCAACTTAAGGCCTGGTGACTACTAGTAGTAATCCTAGGCCGTACTCAGCAATAGTGATAGGTATCCGTATACTCCCGTCAGTGACATTGACATTAAGCTGCCAGTTTGTGTTAGCATACCAAAACTAACGGTGCTGGCTTTTGGGAAGAAGCAAAGGCTTCTTATTTTTCTACCCAAACGTCTGCCTGTGTTGGGTTTCTTTTAGCTTCCTTTCTTGGGCACATAGGCTGTGTGATATTTCCGCCCTTCTGTTAGTTATTCTCTCTTGTCTGTTTGAGCTTAGGCTTGATAGATCTATTGACAGTGTGTTATATAGTTCCGAAGTCCAGTTACTTTCGGATTCTGTATTTAATTTACCTGGCAGATGGTTTTATACCTGTACATTATATAGCTGC--AGA-GTCGTCGGCATGCTGACAATTTCTGTACAAACCGTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350979" ref_strand="+" ref_description="SGN-E350979 [cTOS-7-P24]">
      <seq>ctggtggtcgtcatgcacaacatcatgtccgcctattgcagaacactggagcatcaaggattttgcgtgctgctgctgcagcagccactgcccctattgaagccaaaatctttgctcgaatcgtacttcggaacttggagcaccatcaaatagaatcctcaacttaaggcctggtgactactagtagtaatcgtaggccgtactcagcaatagtgataggtatccgtatactcccgtcagtgacattgacattaagctgccagtttgtgttagcataccaaaactaacggtgctggcttttgggaagaagcaaaggcttcttatttttctacccaaacgtctgcctgtgttgggtttcttttagcttcctttcttgggtacataggctgtgtgatatttccgcccttatgttagttattctcgcttgtctctttgagcttaggcttgatagatctattgacagtgtgttctatagttccgaagtccagttactttcggattctgtatttaatttacctggcagatggttttatacctgtacattatatagctgcagagacgtcgtcggcatgctgacaatttctgtacaaaccgtttgggaaaaaatttctatgatatacttgtgtttctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="+" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="101906" stop="103137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102206" g_stop="102837" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="633" polyA_stop="646"/>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="+" ref_id="SGN-E350979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102206" e_stop="102837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGGTCGTCATGCACAACATCATGTCCGCCTATTGCAGAACACTGGAGCATCAAGGATTTTGCGTGCTGCTGCTGCAGCAGCCACTGCCCCTATTGAAGCCAAAATCTTTGCTCGAATCGTACTTCGGAACTTGGAGCACCATCAAATAGAATCCTCAACTTAAGGCCTGGTGACTACTAGTAGTAATCGTAGGCCGTACTCAGCAATAGTGATAGGTATCCGTATACTCCCGTCAGTGACATTGACATTAAGCTGCCAGTTTGTGTTAGCATACCAAAACTAACGGTGCTGGCTTTTGGGAAGAAGCAAAGGCTTCTTATTTTTCTACCCAAACGTCTGCCTGTGTTGGGTTTCTTTTAGCTTCCTTTCTTGGGTACATAGGCTGTGTGATATTTCCGCCCTTATGTTAGTTATTCTCGCTTGTCTCTTTGAGCTTAGGCTTGATAGATCTATTGACAGTGTGTTCTATAGTTCCGAAGTCCAGTTACTTTCGGATTCTGTATTTAATTTACCTGGCAGATGGTTTTATACCTGTACATTATATAGCTGCAGAGACGTCGTCGGCATGCTGACAATTTCTGTACAAACCGTTTGGGAAAAAATTTCTATGATATACTTGTGTTTCTAA</genome_strand>
        <mrna_strand>CTGGTGGTCGTCATGCACAACATCATGTCCGCCTATTGCAGAACACTGGAGCATCAAGGATTTTGCGTGCTGCTGCTGCAGCAGCCACTGCCCCTATTGAAGCCAAAATCTTTGCTCGAATCGTACTTCGGAACTTGGAGCACCATCAAATAGAATCCTCAACTTAAGGCCTGGTGACTACTAGTAGTAATCGTAGGCCGTACTCAGCAATAGTGATAGGTATCCGTATACTCCCGTCAGTGACATTGACATTAAGCTGCCAGTTTGTGTTAGCATACCAAAACTAACGGTGCTGGCTTTTGGGAAGAAGCAAAGGCTTCTTATTTTTCTACCCAAACGTCTGCCTGTGTTGGGTTTCTTTTAGCTTCCTTTCTTGGGTACATAGGCTGTGTGATATTTCCGCCCTTATGTTAGTTATTCTCGCTTGTCTCTTTGAGCTTAGGCTTGATAGATCTATTGACAGTGTGTTCTATAGTTCCGAAGTCCAGTTACTTTCGGATTCTGTATTTAATTTACCTGGCAGATGGTTTTATACCTGTACATTATATAGCTGCAGAGACGTCGTCGGCATGCTGACAATTTCTGTACAAACCGTTTGGGAAAAAATTTCTATGATATACTTGTGTTTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745385" ref_strand="+" ref_description="SGN-E745385 [GI|47105693]">
      <seq>gaatccaacatttatacaactattttcccaatgaaattcactttgattttcattaatttcctcctcttcacccttcactcaatcactacttattctcttccttttgttgtctttcatggaatatcagataaatgtagcaatggaggaatcacacatttcacagagcttttaagcaactggtcaggctcttcaggacattgcatagaaattggtaatggagaatgggactcctggtttatgccttttgccaaacaggtagacattgcttgccagaagttaaagaaaatgagtgagcttagtgaaggttacaacatgatcgggctctcccaggggaacatggttggtagaggggttattgagttctgtgatgatgacctccggtgaggaatcttatatctctagctggtcctcatgctgggattgcttctattcccttttgtggttcaggtatctggtgcattcttgaagactctttgctcaagttagcaatttacagcaattttatccaggcacatcttgctcctgcaggttacataaaaatcccaactgacatagctaactatagaaaaggatgtaagttccttccagtacccaacaatgaggtacacagaaactctacttacaagaaaaggtttgcaagcttggaaaatttagtacttattatgtttgaaaaagatgaaattttggtaccaaaacagacctcatggtttgggtactaccctgatggttccttcaccactgttttgcctgctcacaagacaaagctgtatacagaagactggattggtttaaagaagttggatgaagctggaaaagtgaagttgttgaaagtatgtggaagtcatcttgaaatatttactagtgaaatgaagaaaaacattctaccatacttgctggatacagtgactaaaccaagatcatttggtttgttatggccttcgtctttcgacgatgaatgcaatgaagaaaaaattagcttaagatcatggaaattttaggtagctagtcttttcacttcttcccacaacctgattgttttccacttggtatgtcaagaaacaatgtgtttcaaaacatcatttttcccaaactttgcaagtagcaaactatgtgtttggtataaagaaatttcagatggttgaaagacatcatcatccggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="105592" stop="102545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105293" g_stop="105176" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105175" i_stop="104844" i_length="332">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104843" g_stop="104759" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="203" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104758" i_stop="104602" i_length="157">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104601" g_stop="104550" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="255" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104549" i_stop="104465" i_length="85">
            <donor d_prob="0.279" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104464" g_stop="104444" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="276" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104443" i_stop="104361" i_length="83">
            <donor d_prob="0.491" d_score="0.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104360" g_stop="104307" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="330" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104306" i_stop="104209" i_length="98">
            <donor d_prob="0.915" d_score="0.98"/>
            <acceptor a_prob="0.416" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104208" g_stop="104158" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="380" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104157" i_stop="104084" i_length="74">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104083" g_stop="104021" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="443" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104020" i_stop="103912" i_length="109">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.593" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="103911" g_stop="103846" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="509" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="103845" i_stop="103763" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="103762" g_stop="103724" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="548" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="103723" i_stop="103620" i_length="104">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="103619" g_stop="103503" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="665" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="103502" i_stop="103422" i_length="81">
            <donor d_prob="0.164" d_score="1.00"/>
            <acceptor a_prob="0.268" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="103421" g_stop="103329" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="758" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="103328" i_stop="103244" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="103243" g_stop="102828" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="1174" r_length="416" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E745385" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>1175</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105293" e_stop="105176"/>
          <exon e_start="104843" e_stop="104759"/>
          <exon e_start="104601" e_stop="104550"/>
          <exon e_start="104464" e_stop="104444"/>
          <exon e_start="104360" e_stop="104307"/>
          <exon e_start="104208" e_stop="104158"/>
          <exon e_start="104083" e_stop="104021"/>
          <exon e_start="103911" e_stop="103846"/>
          <exon e_start="103762" e_stop="103724"/>
          <exon e_start="103619" e_stop="103503"/>
          <exon e_start="103421" e_stop="103329"/>
          <exon e_start="103243" e_stop="102828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCAACATTTATACAACTATTTTCCCAATGAAATTCACTTTGATTTTCATTAATTTCCTCCTCTTCACCCTTCACTCAATCACTACTTATTCTCTTCCTTTTGTTGTCTTTCATGGTAAACTTATCTTCTTAATTAATTTTTATTCTATTGCTTTAATTTATCCCTATGTTTGTAGCCATTGCTTGATTTGTTGCACAATCTTTAATATAGGTATTCGAGGTGATTAATTATTGACTTATTGTAAAGCTGTTCAAAATACACACATAAAAAGTCAAAACTCAAACATGTATACATAAAATGATTTGACCTATTTAGATAGTGTAATTTTTCAACGAATTGACTCTGTCTCTCTGTTTGTATTTTGTAATATGTAGCTTTATCATATTGGAATAACAATGTATTGTAGGGTTTAAATTGTTTTTATTTTTTTTGATATGATAAATCAGGAATATCAGATAAATGTAGCAATGGAGGAATCACACATTTCACAGAGCTTTTAAGCAACTGGTCAGGCTCTTCAGGACATTGCATGTAAGCATGTTCTCCGCGACAAACCAGATATCATCTGGTCTACTACCTCTAGTGATGTGTCCATTTCAGTTGACGAGAGTTTAGTAGGCGTTAATTCTTGCTTTTAAGTCTAATTACCAACTTAAATCTAGCTAATTTTTTTTTTCTGTTTGCTTAGAGAAATTGGTAATGGAGAATGGGACTCCTGGTTTATGCCTTTTGCCAAACAGGTTACCTCTGTTTATCACTGATTCATCAGGCATGGATAAAGGAAAATTAATGACTTCTTCGTGCTTCTTGTTTTTTCGTTTGTAGGTAGACATTGCTTGCCAGAAGGTAAGTCAAGCTAGTGTAATGGGTGTTGGTTTACTTGATCAACCTGCAGTTGTTCCTAATCTCATTATTCATTCAACTTACAGTTAAAAAAAATGAGTGAGCTTAGTGAAGGTTACAACATGATCGGGCTCTCCCAGGTAAAAACAGCAGCAACATTGTATGAAATAAACATGCTAATGTAGGTAGACCTCTTAAAGTTTCCGCGCATAATTTGATCTCAGTCTGGCAATTCCAGGGGAACATGGTTGGTAGAGGGGTTATTGAGTTCTGTGATGATGGACCTCCGGTAAGAAGTTCAAACTTTATCTAGTATATTCAACGAATACCTCTCTATTCATGTACTCGTAATATATGTAACAGGTGAGGAATCTTATATCTCTAGCTGGTCCTCATGCTGGGATTGCTTCTATTCCCTTTTGTGGTGTAATGTTCTCTTTGACTCCATGAACTGAAACTAGCCATTTTCAACTTCTCTTAGTTATGTTTTCGGTGAAACATTGTAGTGTCTAAAAAGTCTTTTCGATTTTCACAGTCAGGTATCTGGTGCATTCTTGAAGACTCTTTGCTCAAGTTAGCAATTTACAGCAATTTTATCCAGGTCTGCCCTTCTTCTTTTTTCATATACACTAGTACAACTATGTAGTCCCTTTATTAAATGGTGTCCTTTTAATGCAATTCCAGGCACATCTTGCTCCTGCAGGTTACATAAAAATCCCAACTGTAAGTAACCAAATTATGTGATTTTGCTATATCTGTTTCCAACGCGATAGGTGTAATTTAGCTGATCTTCTCTGCTTTGTTTTGTGGCATTTTGCGCTTTCCAGGACATAGCTAACTATAGAAAAGGATGTAAGTTCCTTCCAGTACTCAACAATGAGGTACACAGAAACTCTACTTACAAGAAAAGGTTTGCAAGCTTGGAAAATTTAGTACTTATTATGGTGAGTATGGAATAGATTCCCAACTTGATTTTCAGGTTTTTACTCTTCATTCTTAGCTCGTAAGTTTTATTTTTTCATCAGTTTGAAAAAGATGAAATTTTGGTACCAAAACAGACCTCATGGTTTGGGTACTACCCTGATGGTTCCTTCACCACTGTTTTGCCTGCTCACAAGGTAATTATAAACATTCTACGCGTCACACAATCTCATTTCTTTTCTACATAATTCACTTTTTCTTTTCTTTTTTTCTGATTTGTAGACAAAGCTGTATACAGAAGACTGGATTGGTTTAAAGAAGTTGGATGAAGCTGGAAAAGTGAAGTTGTTGAAAGTATGTGGAAGTCATCTTGAAATATCTACTAGTGAAATGAAGAAAAACATTCTACCATACTTGCTGGATACAGTGACTAAACCAAGATCATCTGGTCTGTTATGGCCTTCGTCTTTCGACGATGAATGCAATGAAGAAAAAATTAGCTTAAGATCATGGAAATTTTAGGTAGCTAGTCTTTTCACTTCTTCCCACAACCTGATTGTTTTCCACTTGGTATGTCAAGAAACAATGTGTTTCAAAACATCATTTTTCCCAAACTTTGCAAGTAGCAAACTATGTGTTTGGTATAAAGAAATTTCAGATGGTTGAAAGACATCATCATCCAAACCACTTAGAAACAC</genome_strand>
        <mrna_strand>GAATCCAACATTTATACAACTATTTTCCCAATGAAATTCACTTTGATTTTCATTAATTTCCTCCTCTTCACCCTTCACTCAATCACTACTTATTCTCTTCCTTTTGTTGTCTTTCATG............................................................................................................................................................................................................................................................................................................................................GAATATCAGATAAATGTAGCAATGGAGGAATCACACATTTCACAGAGCTTTTAAGCAACTGGTCAGGCTCTTCAGGACATTGCAT.............................................................................................................................................................AGAAATTGGTAATGGAGAATGGGACTCCTGGTTTATGCCTTTTGCCAAACAG.....................................................................................GTAGACATTGCTTGCCAGAAG...................................................................................TTAAAGAAAATGAGTGAGCTTAGTGAAGGTTACAACATGATCGGGCTCTCCCAG..................................................................................................GGGAACATGGTTGGTAGAGGGGTTATTGAGTTCTGTGATGAT-GACCTCCG..........................................................................GTGAGGAATCTTATATCTCTAGCTGGTCCTCATGCTGGGATTGCTTCTATTCCCTTTTGTGGT.............................................................................................................TCAGGTATCTGGTGCATTCTTGAAGACTCTTTGCTCAAGTTAGCAATTTACAGCAATTTTATCCAG...................................................................................GCACATCTTGCTCCTGCAGGTTACATAAAAATCCCAACT........................................................................................................GACATAGCTAACTATAGAAAAGGATGTAAGTTCCTTCCAGTACCCAACAATGAGGTACACAGAAACTCTACTTACAAGAAAAGGTTTGCAAGCTTGGAAAATTTAGTACTTATTATG.................................................................................TTTGAAAAAGATGAAATTTTGGTACCAAAACAGACCTCATGGTTTGGGTACTACCCTGATGGTTCCTTCACCACTGTTTTGCCTGCTCACAAG.....................................................................................ACAAAGCTGTATACAGAAGACTGGATTGGTTTAAAGAAGTTGGATGAAGCTGGAAAAGTGAAGTTGTTGAAAGTATGTGGAAGTCATCTTGAAATATTTACTAGTGAAATGAAGAAAAACATTCTACCATACTTGCTGGATACAGTGACTAAACCAAGATCATTTGGTTTGTTATGGCCTTCGTCTTTCGACGATGAATGCAATGAAGAAAAAATTAGCTTAAGATCATGGAAATTTTAGGTAGCTAGTCTTTTCACTTCTTCCCACAACCTGATTGTTTTCCACTTGGTATGTCAAGAAACAATGTGTTTCAAAACATCATTTTTCCCAAACTTTGCAAGTAGCAAACTATGTGTTTGGTATAAAGAAATTTCAGATGGTTGAAAGACATCATCATCCGGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731528" ref_strand="+" ref_description="SGN-E731528 [LA27BF09]">
      <seq>ttcactttgattttcattaatttcctcctcttcacccttcactcaatcactacttattctcttccttttgttgtctttcatggaatatcagataaatgtagcaatggaggaatcacacatttcacagagcttttaagcaactggtcaggctcttcaggacattgcatagaaattggtaatggagaatgggactcctggtttatgccttttgccaaacaggtagacattgcttgccagaagttaaagaaaatgagtgagcttagtgaaggttacaacatgatcgggctctcccaggggaacatggttggtagaggggttattgagttctgtgatgatggacctccggtgaggaatcttatatctctagctggtcctcatgctgggattgcttctattcccttttgtggttcaggtatctggtgcattcttgaagactctttgctcaagttagcaatttacagcaattttatccaggcacatcttgctcctgcaggttacataaaaatcccaactgacatagctaactatagaaaaggatgtaagttccttccagtactcaacaatgaggtacacagaaactctacttacaagaaaaggtttgcaagcttggaaaatttagtacttattatgtttgaaaaagatgaaattttggtaccaaaacagacctcatggtttgggtactaccctgatggttccttcaccactgttttgcctgctcacaagacaaagctgtatacagaagactggattggtttaaagaagttggatgaagctggaaaagtgaagttgttgaaagtatgtggaagtcatcttgaaatatctactagtgaaatgaagaaaaacattctaccatacttgctggatacagggacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="105557" stop="102793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105257" g_stop="105176" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105175" i_stop="104844" i_length="332">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104843" g_stop="104759" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="167" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104758" i_stop="104602" i_length="157">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104601" g_stop="104550" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="219" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104549" i_stop="104465" i_length="85">
            <donor d_prob="0.279" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104464" g_stop="104444" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="240" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104443" i_stop="104361" i_length="83">
            <donor d_prob="0.491" d_score="0.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104360" g_stop="104307" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="294" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104306" i_stop="104209" i_length="98">
            <donor d_prob="0.915" d_score="0.98"/>
            <acceptor a_prob="0.416" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104208" g_stop="104158" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="345" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104157" i_stop="104084" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104083" g_stop="104021" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="408" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="104020" i_stop="103912" i_length="109">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.593" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="103911" g_stop="103846" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="474" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="103845" i_stop="103763" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="103762" g_stop="103724" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="513" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="103723" i_stop="103620" i_length="104">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="103619" g_stop="103503" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="630" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="103502" i_stop="103422" i_length="81">
            <donor d_prob="0.164" d_score="1.00"/>
            <acceptor a_prob="0.268" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="103421" g_stop="103329" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="723" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="103328" i_stop="103244" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="103243" g_stop="103093" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="874" r_length="151" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E731528" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105257" e_stop="105176"/>
          <exon e_start="104843" e_stop="104759"/>
          <exon e_start="104601" e_stop="104550"/>
          <exon e_start="104464" e_stop="104444"/>
          <exon e_start="104360" e_stop="104307"/>
          <exon e_start="104208" e_stop="104158"/>
          <exon e_start="104083" e_stop="104021"/>
          <exon e_start="103911" e_stop="103846"/>
          <exon e_start="103762" e_stop="103724"/>
          <exon e_start="103619" e_stop="103503"/>
          <exon e_start="103421" e_stop="103329"/>
          <exon e_start="103243" e_stop="103093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTTTGATTTTCATTAATTTCCTCCTCTTCACCCTTCACTCAATCACTACTTATTCTCTTCCTTTTGTTGTCTTTCATGGTAAACTTATCTTCTTAATTAATTTTTATTCTATTGCTTTAATTTATCCCTATGTTTGTAGCCATTGCTTGATTTGTTGCACAATCTTTAATATAGGTATTCGAGGTGATTAATTATTGACTTATTGTAAAGCTGTTCAAAATACACACATAAAAAGTCAAAACTCAAACATGTATACATAAAATGATTTGACCTATTTAGATAGTGTAATTTTTCAACGAATTGACTCTGTCTCTCTGTTTGTATTTTGTAATATGTAGCTTTATCATATTGGAATAACAATGTATTGTAGGGTTTAAATTGTTTTTATTTTTTTTGATATGATAAATCAGGAATATCAGATAAATGTAGCAATGGAGGAATCACACATTTCACAGAGCTTTTAAGCAACTGGTCAGGCTCTTCAGGACATTGCATGTAAGCATGTTCTCCGCGACAAACCAGATATCATCTGGTCTACTACCTCTAGTGATGTGTCCATTTCAGTTGACGAGAGTTTAGTAGGCGTTAATTCTTGCTTTTAAGTCTAATTACCAACTTAAATCTAGCTAATTTTTTTTTTCTGTTTGCTTAGAGAAATTGGTAATGGAGAATGGGACTCCTGGTTTATGCCTTTTGCCAAACAGGTTACCTCTGTTTATCACTGATTCATCAGGCATGGATAAAGGAAAATTAATGACTTCTTCGTGCTTCTTGTTTTTTCGTTTGTAGGTAGACATTGCTTGCCAGAAGGTAAGTCAAGCTAGTGTAATGGGTGTTGGTTTACTTGATCAACCTGCAGTTGTTCCTAATCTCATTATTCATTCAACTTACAGTTAAAAAAAATGAGTGAGCTTAGTGAAGGTTACAACATGATCGGGCTCTCCCAGGTAAAAACAGCAGCAACATTGTATGAAATAAACATGCTAATGTAGGTAGACCTCTTAAAGTTTCCGCGCATAATTTGATCTCAGTCTGGCAATTCCAGGGGAACATGGTTGGTAGAGGGGTTATTGAGTTCTGTGATGATGGACCTCCGGTAAGAAGTTCAAACTTTATCTAGTATATTCAACGAATACCTCTCTATTCATGTACTCGTAATATATGTAACAGGTGAGGAATCTTATATCTCTAGCTGGTCCTCATGCTGGGATTGCTTCTATTCCCTTTTGTGGTGTAATGTTCTCTTTGACTCCATGAACTGAAACTAGCCATTTTCAACTTCTCTTAGTTATGTTTTCGGTGAAACATTGTAGTGTCTAAAAAGTCTTTTCGATTTTCACAGTCAGGTATCTGGTGCATTCTTGAAGACTCTTTGCTCAAGTTAGCAATTTACAGCAATTTTATCCAGGTCTGCCCTTCTTCTTTTTTCATATACACTAGTACAACTATGTAGTCCCTTTATTAAATGGTGTCCTTTTAATGCAATTCCAGGCACATCTTGCTCCTGCAGGTTACATAAAAATCCCAACTGTAAGTAACCAAATTATGTGATTTTGCTATATCTGTTTCCAACGCGATAGGTGTAATTTAGCTGATCTTCTCTGCTTTGTTTTGTGGCATTTTGCGCTTTCCAGGACATAGCTAACTATAGAAAAGGATGTAAGTTCCTTCCAGTACTCAACAATGAGGTACACAGAAACTCTACTTACAAGAAAAGGTTTGCAAGCTTGGAAAATTTAGTACTTATTATGGTGAGTATGGAATAGATTCCCAACTTGATTTTCAGGTTTTTACTCTTCATTCTTAGCTCGTAAGTTTTATTTTTTCATCAGTTTGAAAAAGATGAAATTTTGGTACCAAAACAGACCTCATGGTTTGGGTACTACCCTGATGGTTCCTTCACCACTGTTTTGCCTGCTCACAAGGTAATTATAAACATTCTACGCGTCACACAATCTCATTTCTTTTCTACATAATTCACTTTTTCTTTTCTTTTTTTCTGATTTGTAGACAAAGCTGTATACAGAAGACTGGATTGGTTTAAAGAAGTTGGATGAAGCTGGAAAAGTGAAGTTGTTGAAAGTATGTGGAAGTCATCTTGAAATATCTACTAGTGAAATGAAGAAAAACATTCTACCATACTTGCTGGATACAGTGACTA</genome_strand>
        <mrna_strand>TTCACTTTGATTTTCATTAATTTCCTCCTCTTCACCCTTCACTCAATCACTACTTATTCTCTTCCTTTTGTTGTCTTTCATG............................................................................................................................................................................................................................................................................................................................................GAATATCAGATAAATGTAGCAATGGAGGAATCACACATTTCACAGAGCTTTTAAGCAACTGGTCAGGCTCTTCAGGACATTGCAT.............................................................................................................................................................AGAAATTGGTAATGGAGAATGGGACTCCTGGTTTATGCCTTTTGCCAAACAG.....................................................................................GTAGACATTGCTTGCCAGAAG...................................................................................TTAAAGAAAATGAGTGAGCTTAGTGAAGGTTACAACATGATCGGGCTCTCCCAG..................................................................................................GGGAACATGGTTGGTAGAGGGGTTATTGAGTTCTGTGATGATGGACCTCCG..........................................................................GTGAGGAATCTTATATCTCTAGCTGGTCCTCATGCTGGGATTGCTTCTATTCCCTTTTGTGGT.............................................................................................................TCAGGTATCTGGTGCATTCTTGAAGACTCTTTGCTCAAGTTAGCAATTTACAGCAATTTTATCCAG...................................................................................GCACATCTTGCTCCTGCAGGTTACATAAAAATCCCAACT........................................................................................................GACATAGCTAACTATAGAAAAGGATGTAAGTTCCTTCCAGTACTCAACAATGAGGTACACAGAAACTCTACTTACAAGAAAAGGTTTGCAAGCTTGGAAAATTTAGTACTTATTATG.................................................................................TTTGAAAAAGATGAAATTTTGGTACCAAAACAGACCTCATGGTTTGGGTACTACCCTGATGGTTCCTTCACCACTGTTTTGCCTGCTCACAAG.....................................................................................ACAAAGCTGTATACAGAAGACTGGATTGGTTTAAAGAAGTTGGATGAAGCTGGAAAAGTGAAGTTGTTGAAAGTATGTGGAAGTCATCTTGAAATATCTACTAGTGAAATGAAGAAAAACATTCTACCATACTTGCTGGATACAGGGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275670" ref_strand="+" ref_description="SGN-E275670 [cLEN-18-M14]">
      <seq>ccaggggaacatggttggtagaggggttattgagttctgtgatgatggacctccggtgaggaatcttatatctctagctggtcctcatgctgggattgcttctattcccttttgtggttcaggtatctggtgcattcttgaagactctttgctcaagttagcaatttacagcaattttatccaggcacatcttgctcctgcaggttacataaaaatcccaactgacatagctaactatagaaaaggatgtaagttccttccagtactcaacaatgaggtacacagaaactctacttacaagaaaaggtttgcaagcttggaaaatttagtacttattatgtttgaaaaagatgaaattttggtaccaaaacagacctcatggtttgggtactaccctgatggttccttcaccactgttttgcctgctcacaagacaaagctgtatacagaagactggattggtttaaagaagttggatgaagctggaaaagtgaagttgttgaaagtatgtggaagtcatcttgaaatatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0329A12-Wr2EH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0329A12.1" temp_strand="-" temp_description="C01HBa0329A12.1  AC193779.1 htgs_phase:3 submitted_to_sgn_as:102606.C1 sequenced_by:cornell upload_account_name:us 102606.assem.ace.1 from 35 to 107812">
        <position start="104512" stop="102844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104212" g_stop="104158" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104157" i_stop="104084" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104083" g_stop="104021" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="118" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104020" i_stop="103912" i_length="109">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.593" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103911" g_stop="103846" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="184" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103845" i_stop="103763" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103762" g_stop="103724" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="223" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103723" i_stop="103620" i_length="104">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103619" g_stop="103503" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="340" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="103502" i_stop="103422" i_length="81">
            <donor d_prob="0.164" d_score="1.00"/>
            <acceptor a_prob="0.268" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="103421" g_stop="103329" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="433" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="103328" i_stop="103244" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="103243" g_stop="103144" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="533" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0329A12.1" gen_strand="-" ref_id="SGN-E275670" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0329A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104212" e_stop="104158"/>
          <exon e_start="104083" e_stop="104021"/>
          <exon e_start="103911" e_stop="103846"/>
          <exon e_start="103762" e_stop="103724"/>
          <exon e_start="103619" e_stop="103503"/>
          <exon e_start="103421" e_stop="103329"/>
          <exon e_start="103243" e_stop="103144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGGGAACATGGTTGGTAGAGGGGTTATTGAGTTCTGTGATGATGGACCTCCGGTAAGAAGTTCAAACTTTATCTAGTATATTCAACGAATACCTCTCTATTCATGTACTCGTAATATATGTAACAGGTGAGGAATCTTATATCTCTAGCTGGTCCTCATGCTGGGATTGCTTCTATTCCCTTTTGTGGTGTAATGTTCTCTTTGACTCCATGAACTGAAACTAGCCATTTTCAACTTCTCTTAGTTATGTTTTCGGTGAAACATTGTAGTGTCTAAAAAGTCTTTTCGATTTTCACAGTCAGGTATCTGGTGCATTCTTGAAGACTCTTTGCTCAAGTTAGCAATTTACAGCAATTTTATCCAGGTCTGCCCTTCTTCTTTTTTCATATACACTAGTACAACTATGTAGTCCCTTTATTAAATGGTGTCCTTTTAATGCAATTCCAGGCACATCTTGCTCCTGCAGGTTACATAAAAATCCCAACTGTAAGTAACCAAATTATGTGATTTTGCTATATCTGTTTCCAACGCGATAGGTGTAATTTAGCTGATCTTCTCTGCTTTGTTTTGTGGCATTTTGCGCTTTCCAGGACATAGCTAACTATAGAAAAGGATGTAAGTTCCTTCCAGTACTCAACAATGAGGTACACAGAAACTCTACTTACAAGAAAAGGTTTGCAAGCTTGGAAAATTTAGTACTTATTATGGTGAGTATGGAATAGATTCCCAACTTGATTTTCAGGTTTTTACTCTTCATTCTTAGCTCGTAAGTTTTATTTTTTCATCAGTTTGAAAAAGATGAAATTTTGGTACCAAAACAGACCTCATGGTTTGGGTACTACCCTGATGGTTCCTTCACCACTGTTTTGCCTGCTCACAAGGTAATTATAAACATTCTACGCGTCACACAATCTCATTTCTTTTCTACATAATTCACTTTTTCTTTTCTTTTTTTCTGATTTGTAGACAAAGCTGTATACAGAAGACTGGATTGGTTTAAAGAAGTTGGATGAAGCTGGAAAAGTGAAGTTGTTGAAAGTATGTGGAAGTCATCTTGAAATATCTA</genome_strand>
        <mrna_strand>CCAGGGGAACATGGTTGGTAGAGGGGTTATTGAGTTCTGTGATGATGGACCTCCG..........................................................................GTGAGGAATCTTATATCTCTAGCTGGTCCTCATGCTGGGATTGCTTCTATTCCCTTTTGTGGT.............................................................................................................TCAGGTATCTGGTGCATTCTTGAAGACTCTTTGCTCAAGTTAGCAATTTACAGCAATTTTATCCAG...................................................................................GCACATCTTGCTCCTGCAGGTTACATAAAAATCCCAACT........................................................................................................GACATAGCTAACTATAGAAAAGGATGTAAGTTCCTTCCAGTACTCAACAATGAGGTACACAGAAACTCTACTTACAAGAAAAGGTTTGCAAGCTTGGAAAATTTAGTACTTATTATG.................................................................................TTTGAAAAAGATGAAATTTTGGTACCAAAACAGACCTCATGGTTTGGGTACTACCCTGATGGTTCCTTCACCACTGTTTTGCCTGCTCACAAG.....................................................................................ACAAAGCTGTATACAGAAGACTGGATTGGTTTAAAGAAGTTGGATGAAGCTGGAAAAGTGAAGTTGTTGAAAGTATGTGGAAGTCATCTTGAAATATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>63</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="21590" PGL_stop="17276"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21590" e_stop="21362"/>
            <exon e_start="17627" e_stop="17276"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21590" e_stop="21362" e_length="229"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="21361" i_stop="17628" i_length="3734"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17627" e_stop="17276" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21590" stop="21362"/>
              <exon start="17627" stop="17489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21580" stop="21362"/>
              <exon start="17627" stop="17276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21499" stop="21362"/>
              <exon start="17627" stop="17310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310558" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTAATGAACCAAAACGAAGAAAACGCCGCTGTTGACGGCACGTCCAGATACCGATGGTGGGCAGCCGCGAGTACAGGTCAGTTACTATGGGGAATTTACGCTTATAGGAGAGGTTTTGCCGGCGAATGTCGAATGATGCCACTTAAAGCCTTCGCCGTCGCCTCGCTTTTCGTCGGCGCCACCGCCTCCGCCTCTATGGCTTCTCTTCGCGCCTGCGGCATCCACTCG : GTGGAAGACATGAAGGTTGTCGGGGAAAGTATAAGAACCGGACTTGGGTTGACACGAAGGGCACGAGAAGACTGACTACTTTAGAGCACTATCGCGAATCAGTAGCCTTAAGACGATTGACCAAGGAAGATCTCCATCTGTGTAGTTTCTTGCTAAACTCAATTCCAAGGGGAGCACATATCCGAAAGGGTATCTACCCCAGGCATGTACCTAAGTAATAAAATGGATGACATTTGTTTTTCTATATACAAGGTTAATTTATACTTAGTGGATAAGTATATCCAACTATGCACTGGCATATTGTATCATATCAACTGCATCTACGACAGCTACAAGAGCATCAGTTGTTTGG</gDNA_template>
            <first_frame> G  N  E  P  K  R  R  K  R  R  C  *  R  H  V  Q  I  P  M  V  G  S  R  E  Y  R  S  V  T  M  G  N  L  R  L  *  E  R  F  C  R  R  M  S  N  D  A  T  *  S  L  R  R  R  L  A  F  R  R  R  H  R  L  R  L  Y  G  F  S  S  R  L  R  H  P  L   : G  G  R  H  E  G  C  R  G  K  Y  K  N  R  T  W  V  D  T  K  G  T  R  R  L  T  T  L  E  H  Y  R  E  S  V  A  L  R  R  L  T  K  E  D  L  H  L  C  S  F  L  L  N  S  I  P  R  G  A  H  I  R  K  G  I  Y  P  R  H  V  P  K  *  *  N  G  *  H  L  F  F  Y  I  Q  G  *  F  I  L  S  G  *  V  Y  P  T  M  H  W  H  I  V  S  Y  Q  L  H  L  R  Q  L  Q  E  H  Q  L  F   </first_frame>
            <second_frame>  V  M  N  Q  N  E  E  N  A  A  V  D  G  T  S  R  Y  R  W  W  A  A  A  S  T  G  Q  L  L  W  G  I  Y  A  Y  R  R  G  F  A  G  E  C  R  M  M  P  L  K  A  F  A  V  A  S  L  F  V  G  A  T  A  S  A  S  M  A  S  L  R  A  C  G  I  H  S  :  V  E  D  M  K  V  V  G  E  S  I  R  T  G  L  G  L  T  R  R  A  R  E  D  *  L  L  *  S  T  I  A  N  Q  *  P  *  D  D  *  P  R  K  I  S  I  C  V  V  S  C  *  T  Q  F  Q  G  E  H  I  S  E  R  V  S  T  P  G  M  Y  L  S  N  K  M  D  D  I  C  F  S  I  Y  K  V  N  L  Y  L  V  D  K  Y  I  Q  L  C  T  G  I  L  Y  H  I  N  C  I  Y  D  S  Y  K  S  I  S  C  L  </second_frame>
            <third_frame>   *  *  T  K  T  K  K  T  P  L  L  T  A  R  P  D  T  D  G  G  Q  P  R  V  Q  V  S  Y  Y  G  E  F  T  L  I  G  E  V  L  P  A  N  V  E  *  C  H  L  K  P  S  P  S  P  R  F  S  S  A  P  P  P  P  P  L  W  L  L  F  A  P  A  A  S  T  R :   W  K  T  *  R  L  S  G  K  V  *  E  P  D  L  G  *  H  E  G  H  E  K  T  D  Y  F  R  A  L  S  R  I  S  S  L  K  T  I  D  Q  G  R  S  P  S  V  *  F  L  A  K  L  N  S  K  G  S  T  Y  P  K  G  Y  L  P  Q  A  C  T  *  V  I  K  W  M  T  F  V  F  L  Y  T  R  L  I  Y  T  *  W  I  S  I  S  N  Y  A  L  A  Y  C  I  I  S  T  A  S  T  T  A  T  R  A  S  V  V  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21589" stop="21362"/>
                    <exon start="17627" stop="17553"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMNQNEENAAVDGTSRYRWWAAASTGQLLWGIYAYRRGFAGECRMMPLKAFAVASLFVGATASASMASLRACGIHSVEDMKVVGESIRTGLGLTRRARED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21443" stop="21362"/>
                    <exon start="17627" stop="17410"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLRRRLAFRRRHRLRLYGFSSRLRHPLGGRHEGCRGKYKNRTWVDTKGTRRLTTLEHYRESVALRRLTKEDLHLCSFLLNSIPRGAHIRKGIYPRHVPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="19043" PGL_stop="19464"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19043" e_stop="19464"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="19043" e_stop="19464" e_length="422"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19043" stop="19464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19235" stop="19449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAAAATTAAAAATATTTAACTGCATATTTTATCCAAAATCTTAATAGCAATAACACATATTAGCAAATATTCAATTCAAAAACCAATAGTAGATACTAAAATGTCTAAAACTTTAAAGACCAAACAATTCAAAATACAATAAACCAAAACTTTAAAAGTCTATTCTTCTTCAAAATTACCCTTGAGTGCCATAATTCCATCCAATGTCCCTCTTTTGCTAGCAACCGCCATTGATTATTAAATTCAATTAATTCGTTGTTTAGGAATATTGGAATAAATAATTAGAAAAATGGAAAGATTTTTTTTTAATTAACTGCCTATAATTAAAAAAAAATTACACAAAGCAGTAAGCAATTAAGCACTGCTTACAGCCTTGCACCAAAAAAACACAACTGAAAAAAACTGAAGAAGAAGAACAGA</gDNA_template>
            <first_frame> P  K  I  K  N  I  *  L  H  I  L  S  K  I  L  I  A  I  T  H  I  S  K  Y  S  I  Q  K  P  I  V  D  T  K  M  S  K  T  L  K  T  K  Q  F  K  I  Q  *  T  K  T  L  K  V  Y  S  S  S  K  L  P  L  S  A  I  I  P  S  N  V  P  L  L  L  A  T  A  I  D  Y  *  I  Q  L  I  R  C  L  G  I  L  E  *  I  I  R  K  M  E  R  F  F  F  N  *  L  P  I  I  K  K  K  L  H  K  A  V  S  N  *  A  L  L  T  A  L  H  Q  K  N  T  T  E  K  N  *  R  R  R  T   </first_frame>
            <second_frame>  Q  K  L  K  I  F  N  C  I  F  Y  P  K  S  *  *  Q  *  H  I  L  A  N  I  Q  F  K  N  Q  *  *  I  L  K  C  L  K  L  *  R  P  N  N  S  K  Y  N  K  P  K  L  *  K  S  I  L  L  Q  N  Y  P  *  V  P  *  F  H  P  M  S  L  F  C  *  Q  P  P  L  I  I  K  F  N  *  F  V  V  *  E  Y  W  N  K  *  L  E  K  W  K  D  F  F  L  I  N  C  L  *  L  K  K  N  Y  T  K  Q  *  A  I  K  H  C  L  Q  P  C  T  K  K  T  Q  L  K  K  T  E  E  E  E  Q  </second_frame>
            <third_frame>   K  N  *  K  Y  L  T  A  Y  F  I  Q  N  L  N  S  N  N  T  Y  *  Q  I  F  N  S  K  T  N  S  R  Y  *  N  V  *  N  F  K  D  Q  T  I  Q  N  T  I  N  Q  N  F  K  S  L  F  F  F  K  I  T  L  E  C  H  N  S  I  Q  C  P  S  F  A  S  N  R  H  *  L  L  N  S  I  N  S  L  F  R  N  I  G  I  N  N  *  K  N  G  K  I  F  F  *  L  T  A  Y  N  *  K  K  I  T  Q  S  S  K  Q  L  S  T  A  Y  S  L  A  P  K  K  H  N  *  K  K  L  K  K  K  N  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0329A12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="26825" PGL_stop="32442"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26825" e_stop="27186"/>
            <exon e_start="27909" e_stop="28010"/>
            <exon e_start="28837" e_stop="29058"/>
            <exon e_start="30186" e_stop="30244"/>
            <exon e_start="30352" e_stop="30443"/>
            <exon e_start="30562" e_stop="30674"/>
            <exon e_start="30748" e_stop="30810"/>
            <exon e_start="31045" e_stop="31205"/>
            <exon e_start="31305" e_stop="31367"/>
            <exon e_start="31684" e_stop="32206"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.945"/>
          <exon-intron don_prob="0.986" acc_prob="0.000" e_score="0.961"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="0.929"/>
          <exon-intron don_prob="0.864" acc_prob="0.997" e_score="0.966"/>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="0.967"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.965"/>
          <exon-intron don_prob="0.995" acc_prob="0.986" e_score="0.937"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="26825" e_stop="27186" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="27187" i_stop="27908" i_length="722"/>
          </intron>
          <exon e_serial="2" e_score="0.961">
            <gDNA_exon_boundary e_start="27909" e_stop="28010" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28011" i_stop="28836" i_length="826"/>
          </intron>
          <exon e_serial="3" e_score="0.929">
            <gDNA_exon_boundary e_start="28837" e_stop="29058" e_length="222"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="29059" i_stop="30185" i_length="1127"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="30186" e_stop="30244" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.864" acc_prob="0.997">
            <gDNA_intron_boundary i_start="30245" i_stop="30351" i_length="107"/>
          </intron>
          <exon e_serial="5" e_score="0.967">
            <gDNA_exon_boundary e_start="30352" e_stop="30443" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="30444" i_stop="30561" i_length="118"/>
          </intron>
          <exon e_serial="6" e_score="0.965">
            <gDNA_exon_boundary e_start="30562" e_stop="30674" e_length="113"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30675" i_stop="30747" i_length="73"/>
          </intron>
          <exon e_serial="7" e_score="0.937">
            <gDNA_exon_boundary e_start="30748" e_stop="30810" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.986">
            <gDNA_intron_boundary i_start="30811" i_stop="31044" i_length="234"/>
          </intron>
          <exon e_serial="8" e_score="0.994">
            <gDNA_exon_boundary e_start="31045" e_stop="31205" e_length="161"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31206" i_stop="31304" i_length="99"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="31305" e_stop="31367" e_length="63"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31368" i_stop="31683" i_length="316"/>
          </intron>
          <exon e_serial="10" e_score="0.996">
            <gDNA_exon_boundary e_start="31684" e_stop="32206" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26825" stop="27186"/>
              <exon start="27909" stop="28010"/>
              <exon start="28837" stop="29047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26825" stop="27186"/>
              <exon start="27909" stop="27962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28952" stop="29058"/>
              <exon start="30186" stop="30244"/>
              <exon start="30352" stop="30443"/>
              <exon start="30562" stop="30584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30186" stop="30244"/>
              <exon start="30352" stop="30443"/>
              <exon start="30562" stop="30674"/>
              <exon start="30748" stop="30810"/>
              <exon start="31045" stop="31205"/>
              <exon start="31305" stop="31334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30796" stop="30810"/>
              <exon start="31045" stop="31205"/>
              <exon start="31305" stop="31367"/>
              <exon start="31684" stop="32206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30796" stop="30810"/>
              <exon start="31045" stop="31205"/>
              <exon start="31305" stop="31367"/>
              <exon start="31684" stop="32061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30796" stop="30810"/>
              <exon start="31045" stop="31205"/>
              <exon start="31305" stop="31367"/>
              <exon start="31684" stop="32030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30796" stop="30810"/>
              <exon start="31045" stop="31205"/>
              <exon start="31305" stop="31367"/>
              <exon start="31684" stop="32007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30797" stop="30810"/>
              <exon start="31045" stop="31205"/>
              <exon start="31305" stop="31367"/>
              <exon start="31684" stop="32066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368307" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCCAATGGCTAATTCGCAGCAAATCGAAACCTCCATAAACCCTAGCCCTAATCCTCCTCCTCCGGGATCCCCACCGCCGGCTGCCGCCGTTGTTTCTCGACCGTCAGATGATGAAACGAATCGTTCCGCCACCGCTAAACGTTCACGGGAGGAATACGCCCCTGCCGCCACGGACGAGGCTGGTTTGTCTGGTGACGATGTGCCGCCGTTGAAGAAGCGGGTTAAGGTTTCTCAAGATGTAGTGTACCGTATTGTTGTTCCTTCAAGACAGATCGGGAAAGTTATTGGTAAAGCAGGGCATCGTATACAGAAGATTCGTGAAGAAACTAAAGCTACTATCAAAGTTGCTGATGCTATCGCT : CGTCATGAAGAGCGAGTAATTATCATTAGCTCCAGGGACAATGATGATATGTTCAGTGACGCGGAGAATGCCCTTCATCAAATTGTGTCACTTATTTTAAAG : TAGGATGATGGCAACCTTGATGCGCAAAAAGTTGGTACTGGACATGTGGCAGCAAACACGGTAAGGTTCTTGATTGCTGGTTCTCAAGCAGGTGGTTTGATAGGAATGTCTGGTCAAAATATTGAAACTTTGAGGAATTCTTCTGGAGCTACGATCACAGTTCTTGCTCAACATCAGTTGCCTTTGTGTGCATCTGCTCATGAGTCTGACCGTGTAGTACAG : CTTGCTGGAGACATCCCTGCAGTCTTGAGAGCTGTGGTAGAAATTGGCTGTCAATTGAG : GGATAACCCCCCTAAACAAGTAATTTCGATCAGCCCGACTTACAATCTTGGTTATTCTCGTCCACCTCAACCACATGTGGATCCATCTTCAG : CTGAATATGTAAATCTGACTATGTTAGTTCCCGAATCATTAGCTGGTGGGTTGATTGGAAGGTGCGGCTCCAATATTTCAAGGATCCGTGCAGAGTCTGGAGCGACAATTAAG : GTACATGGTGGGAAAGGCGAGCAGAAACAAAGACAAGTTCACCTTGGTGGTAGTGCACAACAG : GTCGCCCTTGCAAAGCAAAGAGTTGATGAATATGTCTATTCCCAGTTGATGTTACAAGCTGGTGGTGAGCAGTTACAGGATACAATGCAGCTCCAGCAGCAGTCTATGCAGCTGCAACAGTCGATGCATTTGCAACATTCAATGCAGATGCAACAACAAAT : ACCCAACACATCTGCTACGCTGATGCCAGGATATAATCATGGTCATGGAGTTTATATGAACAG : TAACCAAGAAGCTCATATGATGGCATCATACCCACAAGTCTACACATCAACCAACCCTCAAGCTCCCGGTTACTATGGTCAGTCTTATCCAGCTCCACAGATGTAGAAGCAAAAGGAGGTCTTTCTCATACATCTTTTCAATCAGATGATTGATATACACAATGTAGACAATTTCTTGTTGTGTCATTATTTGGGTTTCTGATATAAGCATTGGAGATGGTCGGTTTCGGCCAGGATGTCTCTTGTTGATGTTGCGACATAGTTTGCATGAGATCACTTAATTCGTGGAATATTGATGGAAAAGTTTATGCTTAAAGTTTTACGATCAGCGAATCTAGTACGCCTCTGGGAGCGGCAGATCTACTGAAGGGAGCTTATAGTAGCAGTTGCATTGAAGGTATAAGCATAGCCCTCTGGATCTTCTGCCCCTTTGATCTCCTCTGGTTCCACCCTGCCCGATCCTGCCCCTTGAAAAAGCTCCCAAACCCCGCCCTGGTTTACCTTTGCTGCTTGATTTTCATTT</gDNA_template>
            <first_frame> L  Q  W  L  I  R  S  K  S  K  P  P  *  T  L  A  L  I  L  L  L  R  D  P  H  R  R  L  P  P  L  F  L  D  R  Q  M  M  K  R  I  V  P  P  P  L  N  V  H  G  R  N  T  P  L  P  P  R  T  R  L  V  C  L  V  T  M  C  R  R  *  R  S  G  L  R  F  L  K  M  *  C  T  V  L  L  F  L  Q  D  R  S  G  K  L  L  V  K  Q  G  I  V  Y  R  R  F  V  K  K  L  K  L  L  S  K  L  L  M  L  S  L :   V  M  K  S  E  *  L  S  L  A  P  G  T  M  M  I  C  S  V  T  R  R  M  P  F  I  K  L  C  H  L  F  *  S :   R  M  M  A  T  L  M  R  K  K  L  V  L  D  M  W  Q  Q  T  R  *  G  S  *  L  L  V  L  K  Q  V  V  *  *  E  C  L  V  K  I  L  K  L  *  G  I  L  L  E  L  R  S  Q  F  L  L  N  I  S  C  L  C  V  H  L  L  M  S  L  T  V  *  Y  S :   L  L  E  T  S  L  Q  S  *  E  L  W  *  K  L  A  V  N  *   : G  I  T  P  L  N  K  *  F  R  S  A  R  L  T  I  L  V  I  L  V  H  L  N  H  M  W  I  H  L  Q  :  L  N  M  *  I  *  L  C  *  F  P  N  H  *  L  V  G  *  L  E  G  A  A  P  I  F  Q  G  S  V  Q  S  L  E  R  Q  L  R :   Y  M  V  G  K  A  S  R  N  K  D  K  F  T  L  V  V  V  H  N  R :   S  P  L  Q  S  K  E  L  M  N  M  S  I  P  S  *  C  Y  K  L  V  V  S  S  Y  R  I  Q  C  S  S  S  S  S  L  C  S  C  N  S  R  C  I  C  N  I  Q  C  R  C  N  N  K   : Y  P  T  H  L  L  R  *  C  Q  D  I  I  M  V  M  E  F  I  *  T   : V  T  K  K  L  I  *  W  H  H  T  H  K  S  T  H  Q  P  T  L  K  L  P  V  T  M  V  S  L  I  Q  L  H  R  C  R  S  K  R  R  S  F  S  Y  I  F  S  I  R  *  L  I  Y  T  M  *  T  I  S  C  C  V  I  I  W  V  S  D  I  S  I  G  D  G  R  F  R  P  G  C  L  L  L  M  L  R  H  S  L  H  E  I  T  *  F  V  E  Y  *  W  K  S  L  C  L  K  F  Y  D  Q  R  I  *  Y  A  S  G  S  G  R  S  T  E  G  S  L  *  *  Q  L  H  *  R  Y  K  H  S  P  L  D  L  L  P  L  *  S  P  L  V  P  P  C  P  I  L  P  L  E  K  A  P  K  P  R  P  G  L  P  L  L  L  D  F  H   </first_frame>
            <second_frame>  S  N  G  *  F  A  A  N  R  N  L  H  K  P  *  P  *  S  S  S  S  G  I  P  T  A  G  C  R  R  C  F  S  T  V  R  *  *  N  E  S  F  R  H  R  *  T  F  T  G  G  I  R  P  C  R  H  G  R  G  W  F  V  W  *  R  C  A  A  V  E  E  A  G  *  G  F  S  R  C  S  V  P  Y  C  C  S  F  K  T  D  R  E  S  Y  W  *  S  R  A  S  Y  T  E  D  S  *  R  N  *  S  Y  Y  Q  S  C  *  C  Y  R   : S  S  *  R  A  S  N  Y  H  *  L  Q  G  Q  *  *  Y  V  Q  *  R  G  E  C  P  S  S  N  C  V  T  Y  F  K   : V  G  *  W  Q  P  *  C  A  K  S  W  Y  W  T  C  G  S  K  H  G  K  V  L  D  C  W  F  S  S  R  W  F  D  R  N  V  W  S  K  Y  *  N  F  E  E  F  F  W  S  Y  D  H  S  S  C  S  T  S  V  A  F  V  C  I  C  S  *  V  *  P  C  S  T   : A  C  W  R  H  P  C  S  L  E  S  C  G  R  N  W  L  S  I  E  :  G  *  P  P  *  T  S  N  F  D  Q  P  D  L  Q  S  W  L  F  S  S  T  S  T  T  C  G  S  I  F  S :   *  I  C  K  S  D  Y  V  S  S  R  I  I  S  W  W  V  D  W  K  V  R  L  Q  Y  F  K  D  P  C  R  V  W  S  D  N  *   : G  T  W  W  E  R  R  A  E  T  K  T  S  S  P  W  W  *  C  T  T   : G  R  P  C  K  A  K  S  *  *  I  C  L  F  P  V  D  V  T  S  W  W  *  A  V  T  G  Y  N  A  A  P  A  A  V  Y  A  A  A  T  V  D  A  F  A  T  F  N  A  D  A  T  T  N  :  T  Q  H  I  C  Y  A  D  A  R  I  *  S  W  S  W  S  L  Y  E  Q  :  *  P  R  S  S  Y  D  G  I  I  P  T  S  L  H  I  N  Q  P  S  S  S  R  L  L  W  S  V  L  S  S  S  T  D  V  E  A  K  G  G  L  S  H  T  S  F  Q  S  D  D  *  Y  T  Q  C  R  Q  F  L  V  V  S  L  F  G  F  L  I  *  A  L  E  M  V  G  F  G  Q  D  V  S  C  *  C  C  D  I  V  C  M  R  S  L  N  S  W  N  I  D  G  K  V  Y  A  *  S  F  T  I  S  E  S  S  T  P  L  G  A  A  D  L  L  K  G  A  Y  S  S  S  C  I  E  G  I  S  I  A  L  W  I  F  C  P  F  D  L  L  W  F  H  P  A  R  S  C  P  L  K  K  L  P  N  P  A  L  V  Y  L  C  C  L  I  F  I  </second_frame>
            <third_frame>   P  M  A  N  S  Q  Q  I  E  T  S  I  N  P  S  P  N  P  P  P  P  G  S  P  P  P  A  A  A  V  V  S  R  P  S  D  D  E  T  N  R  S  A  T  A  K  R  S  R  E  E  Y  A  P  A  A  T  D  E  A  G  L  S  G  D  D  V  P  P  L  K  K  R  V  K  V  S  Q  D  V  V  Y  R  I  V  V  P  S  R  Q  I  G  K  V  I  G  K  A  G  H  R  I  Q  K  I  R  E  E  T  K  A  T  I  K  V  A  D  A  I  A  :  R  H  E  E  R  V  I  I  I  S  S  R  D  N  D  D  M  F  S  D  A  E  N  A  L  H  Q  I  V  S  L  I  L  K  :  *  D  D  G  N  L  D  A  Q  K  V  G  T  G  H  V  A  A  N  T  V  R  F  L  I  A  G  S  Q  A  G  G  L  I  G  M  S  G  Q  N  I  E  T  L  R  N  S  S  G  A  T  I  T  V  L  A  Q  H  Q  L  P  L  C  A  S  A  H  E  S  D  R  V  V  Q  :  L  A  G  D  I  P  A  V  L  R  A  V  V  E  I  G  C  Q  L  R :   D  N  P  P  K  Q  V  I  S  I  S  P  T  Y  N  L  G  Y  S  R  P  P  Q  P  H  V  D  P  S  S   : A  E  Y  V  N  L  T  M  L  V  P  E  S  L  A  G  G  L  I  G  R  C  G  S  N  I  S  R  I  R  A  E  S  G  A  T  I  K  :  V  H  G  G  K  G  E  Q  K  Q  R  Q  V  H  L  G  G  S  A  Q  Q  :  V  A  L  A  K  Q  R  V  D  E  Y  V  Y  S  Q  L  M  L  Q  A  G  G  E  Q  L  Q  D  T  M  Q  L  Q  Q  Q  S  M  Q  L  Q  Q  S  M  H  L  Q  H  S  M  Q  M  Q  Q  Q  I :   P  N  T  S  A  T  L  M  P  G  Y  N  H  G  H  G  V  Y  M  N  S :   N  Q  E  A  H  M  M  A  S  Y  P  Q  V  Y  T  S  T  N  P  Q  A  P  G  Y  Y  G  Q  S  Y  P  A  P  Q  M  *  K  Q  K  E  V  F  L  I  H  L  F  N  Q  M  I  D  I  H  N  V  D  N  F  L  L  C  H  Y  L  G  F  *  Y  K  H  W  R  W  S  V  S  A  R  M  S  L  V  D  V  A  T  *  F  A  *  D  H  L  I  R  G  I  L  M  E  K  F  M  L  K  V  L  R  S  A  N  L  V  R  L  W  E  R  Q  I  Y  *  R  E  L  I  V  A  V  A  L  K  V  *  A  *  P  S  G  S  S  A  P  L  I  S  S  G  S  T  L  P  D  P  A  P  *  K  S  S  Q  T  P  P  W  F  T  F  A  A  *  F  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28840" stop="29058"/>
                    <exon start="30186" stop="30244"/>
                    <exon start="30352" stop="30443"/>
                    <exon start="30562" stop="30674"/>
                    <exon start="30748" stop="30810"/>
                    <exon start="31045" stop="31205"/>
                    <exon start="31305" stop="31367"/>
                    <exon start="31684" stop="31789"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDGNLDAQKVGTGHVAANTVRFLIAGSQAGGLIGMSGQNIETLRNSSGATITVLAQHQLPLCASAHESDRVVQLAGDIPAVLRAVVEIGCQLRDNPPKQVISISPTYNLGYSRPPQPHVDPSSAEYVNLTMLVPESLAGGLIGRCGSNISRIRAESGATIKVHGGKGEQKQRQVHLGGSAQQVALAKQRVDEYVYSQLMLQAGGEQLQDTMQLQQQSMQLQQSMHLQHSMQMQQQIPNTSATLMPGYNHGHGVYMNSNQEAHMMASYPQVYTSTNPQAPGYYGQSYPAPQM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26827" stop="27186"/>
                    <exon start="27909" stop="28010"/>
                    <exon start="28837" stop="28839"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMANSQQIETSINPSPNPPPPGSPPPAAAVVSRPSDDETNRSATAKRSREEYAPAATDEAGLSGDDVPPLKKRVKVSQDVVYRIVVPSRQIGKVIGKAGHRIQKIREETKATIKVADAIARHEERVIIISSRDNDDMFSDAENALHQIVSLILK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31999" stop="32205"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFTISESSTPLGAADLLKGAYSSSCIEGISIALWIFCPFDLLWFHPARSCPLKKLPNPALVYLCCLIFI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26825" e_stop="27186"/>
            <exon e_start="27909" e_stop="28010"/>
            <exon e_start="28837" e_stop="29058"/>
            <exon e_start="30186" e_stop="30244"/>
            <exon e_start="30352" e_stop="30443"/>
            <exon e_start="30562" e_stop="30674"/>
            <exon e_start="30748" e_stop="30810"/>
            <exon e_start="31045" e_stop="31205"/>
            <exon e_start="31305" e_stop="31367"/>
            <exon e_start="31684" e_stop="32080"/>
            <exon e_start="32232" e_stop="32442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.945"/>
          <exon-intron don_prob="0.986" acc_prob="0.000" e_score="0.961"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="0.929"/>
          <exon-intron don_prob="0.864" acc_prob="0.997" e_score="0.966"/>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="0.967"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.965"/>
          <exon-intron don_prob="0.995" acc_prob="0.986" e_score="0.937"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.640" acc_prob="0.907" e_score="0.997"/>
          <exon-only e_score="0.810"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="26825" e_stop="27186" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="27187" i_stop="27908" i_length="722"/>
          </intron>
          <exon e_serial="2" e_score="0.961">
            <gDNA_exon_boundary e_start="27909" e_stop="28010" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28011" i_stop="28836" i_length="826"/>
          </intron>
          <exon e_serial="3" e_score="0.929">
            <gDNA_exon_boundary e_start="28837" e_stop="29058" e_length="222"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="29059" i_stop="30185" i_length="1127"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="30186" e_stop="30244" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.864" acc_prob="0.997">
            <gDNA_intron_boundary i_start="30245" i_stop="30351" i_length="107"/>
          </intron>
          <exon e_serial="5" e_score="0.967">
            <gDNA_exon_boundary e_start="30352" e_stop="30443" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="30444" i_stop="30561" i_length="118"/>
          </intron>
          <exon e_serial="6" e_score="0.965">
            <gDNA_exon_boundary e_start="30562" e_stop="30674" e_length="113"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30675" i_stop="30747" i_length="73"/>
          </intron>
          <exon e_serial="7" e_score="0.937">
            <gDNA_exon_boundary e_start="30748" e_stop="30810" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.986">
            <gDNA_intron_boundary i_start="30811" i_stop="31044" i_length="234"/>
          </intron>
          <exon e_serial="8" e_score="0.994">
            <gDNA_exon_boundary e_start="31045" e_stop="31205" e_length="161"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31206" i_stop="31304" i_length="99"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="31305" e_stop="31367" e_length="63"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31368" i_stop="31683" i_length="316"/>
          </intron>
          <exon e_serial="10" e_score="0.997">
            <gDNA_exon_boundary e_start="31684" e_stop="32080" e_length="397"/>
          </exon>
          <intron i_serial="10" don_prob="0.640" acc_prob="0.907">
            <gDNA_intron_boundary i_start="32081" i_stop="32231" i_length="151"/>
          </intron>
          <exon e_serial="11" e_score="0.810">
            <gDNA_exon_boundary e_start="32232" e_stop="32442" e_length="211"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26825" stop="27186"/>
              <exon start="27909" stop="28010"/>
              <exon start="28837" stop="29047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26825" stop="27186"/>
              <exon start="27909" stop="27962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28952" stop="29058"/>
              <exon start="30186" stop="30244"/>
              <exon start="30352" stop="30443"/>
              <exon start="30562" stop="30584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30186" stop="30244"/>
              <exon start="30352" stop="30443"/>
              <exon start="30562" stop="30674"/>
              <exon start="30748" stop="30810"/>
              <exon start="31045" stop="31205"/>
              <exon start="31305" stop="31334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30796" stop="30810"/>
              <exon start="31045" stop="31205"/>
              <exon start="31305" stop="31367"/>
              <exon start="31684" stop="32061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30796" stop="30810"/>
              <exon start="31045" stop="31205"/>
              <exon start="31305" stop="31367"/>
              <exon start="31684" stop="32030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30796" stop="30810"/>
              <exon start="31045" stop="31205"/>
              <exon start="31305" stop="31367"/>
              <exon start="31684" stop="32007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30797" stop="30810"/>
              <exon start="31045" stop="31205"/>
              <exon start="31305" stop="31367"/>
              <exon start="31684" stop="32066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31775" stop="32080"/>
              <exon start="32232" stop="32442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609133" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCCAATGGCTAATTCGCAGCAAATCGAAACCTCCATAAACCCTAGCCCTAATCCTCCTCCTCCGGGATCCCCACCGCCGGCTGCCGCCGTTGTTTCTCGACCGTCAGATGATGAAACGAATCGTTCCGCCACCGCTAAACGTTCACGGGAGGAATACGCCCCTGCCGCCACGGACGAGGCTGGTTTGTCTGGTGACGATGTGCCGCCGTTGAAGAAGCGGGTTAAGGTTTCTCAAGATGTAGTGTACCGTATTGTTGTTCCTTCAAGACAGATCGGGAAAGTTATTGGTAAAGCAGGGCATCGTATACAGAAGATTCGTGAAGAAACTAAAGCTACTATCAAAGTTGCTGATGCTATCGCT : CGTCATGAAGAGCGAGTAATTATCATTAGCTCCAGGGACAATGATGATATGTTCAGTGACGCGGAGAATGCCCTTCATCAAATTGTGTCACTTATTTTAAAG : TAGGATGATGGCAACCTTGATGCGCAAAAAGTTGGTACTGGACATGTGGCAGCAAACACGGTAAGGTTCTTGATTGCTGGTTCTCAAGCAGGTGGTTTGATAGGAATGTCTGGTCAAAATATTGAAACTTTGAGGAATTCTTCTGGAGCTACGATCACAGTTCTTGCTCAACATCAGTTGCCTTTGTGTGCATCTGCTCATGAGTCTGACCGTGTAGTACAG : CTTGCTGGAGACATCCCTGCAGTCTTGAGAGCTGTGGTAGAAATTGGCTGTCAATTGAG : GGATAACCCCCCTAAACAAGTAATTTCGATCAGCCCGACTTACAATCTTGGTTATTCTCGTCCACCTCAACCACATGTGGATCCATCTTCAG : CTGAATATGTAAATCTGACTATGTTAGTTCCCGAATCATTAGCTGGTGGGTTGATTGGAAGGTGCGGCTCCAATATTTCAAGGATCCGTGCAGAGTCTGGAGCGACAATTAAG : GTACATGGTGGGAAAGGCGAGCAGAAACAAAGACAAGTTCACCTTGGTGGTAGTGCACAACAG : GTCGCCCTTGCAAAGCAAAGAGTTGATGAATATGTCTATTCCCAGTTGATGTTACAAGCTGGTGGTGAGCAGTTACAGGATACAATGCAGCTCCAGCAGCAGTCTATGCAGCTGCAACAGTCGATGCATTTGCAACATTCAATGCAGATGCAACAACAAAT : ACCCAACACATCTGCTACGCTGATGCCAGGATATAATCATGGTCATGGAGTTTATATGAACAG : TAACCAAGAAGCTCATATGATGGCATCATACCCACAAGTCTACACATCAACCAACCCTCAAGCTCCCGGTTACTATGGTCAGTCTTATCCAGCTCCACAGATGTAGAAGCAAAAGGAGGTCTTTCTCATACATCTTTTCAATCAGATGATTGATATACACAATGTAGACAATTTCTTGTTGTGTCATTATTTGGGTTTCTGATATAAGCATTGGAGATGGTCGGTTTCGGCCAGGATGTCTCTTGTTGATGTTGCGACATAGTTTGCATGAGATCACTTAATTCGTGGAATATTGATGGAAAAGTTTATGCTTAAAGTTTTACGATCAGCGAATCTAGTACGCCTCTGGGAGCGGCAGATCTACTGAAGGGAGCTTATAGTAGCAGTTGCATTGAAG : AAACAGGTATGTGAGAGAATGCATTGCACATCAGACGCGGTCACCTCCCATTGAACTGATTTCTGAAGAACTTGTAAAAAGCACTTTGTGCGAATGATTTAGAAATGAGATGATCAGGAATGATGGATGAGGGGGGGCCGACGGAGAAGCAGAGCTCAGGACAACAGCAAAAAGATTGACACAAGTTCATCGGTTCAATTATTTCTTTTTG</gDNA_template>
            <first_frame> L  Q  W  L  I  R  S  K  S  K  P  P  *  T  L  A  L  I  L  L  L  R  D  P  H  R  R  L  P  P  L  F  L  D  R  Q  M  M  K  R  I  V  P  P  P  L  N  V  H  G  R  N  T  P  L  P  P  R  T  R  L  V  C  L  V  T  M  C  R  R  *  R  S  G  L  R  F  L  K  M  *  C  T  V  L  L  F  L  Q  D  R  S  G  K  L  L  V  K  Q  G  I  V  Y  R  R  F  V  K  K  L  K  L  L  S  K  L  L  M  L  S  L :   V  M  K  S  E  *  L  S  L  A  P  G  T  M  M  I  C  S  V  T  R  R  M  P  F  I  K  L  C  H  L  F  *  S :   R  M  M  A  T  L  M  R  K  K  L  V  L  D  M  W  Q  Q  T  R  *  G  S  *  L  L  V  L  K  Q  V  V  *  *  E  C  L  V  K  I  L  K  L  *  G  I  L  L  E  L  R  S  Q  F  L  L  N  I  S  C  L  C  V  H  L  L  M  S  L  T  V  *  Y  S :   L  L  E  T  S  L  Q  S  *  E  L  W  *  K  L  A  V  N  *   : G  I  T  P  L  N  K  *  F  R  S  A  R  L  T  I  L  V  I  L  V  H  L  N  H  M  W  I  H  L  Q  :  L  N  M  *  I  *  L  C  *  F  P  N  H  *  L  V  G  *  L  E  G  A  A  P  I  F  Q  G  S  V  Q  S  L  E  R  Q  L  R :   Y  M  V  G  K  A  S  R  N  K  D  K  F  T  L  V  V  V  H  N  R :   S  P  L  Q  S  K  E  L  M  N  M  S  I  P  S  *  C  Y  K  L  V  V  S  S  Y  R  I  Q  C  S  S  S  S  S  L  C  S  C  N  S  R  C  I  C  N  I  Q  C  R  C  N  N  K   : Y  P  T  H  L  L  R  *  C  Q  D  I  I  M  V  M  E  F  I  *  T   : V  T  K  K  L  I  *  W  H  H  T  H  K  S  T  H  Q  P  T  L  K  L  P  V  T  M  V  S  L  I  Q  L  H  R  C  R  S  K  R  R  S  F  S  Y  I  F  S  I  R  *  L  I  Y  T  M  *  T  I  S  C  C  V  I  I  W  V  S  D  I  S  I  G  D  G  R  F  R  P  G  C  L  L  L  M  L  R  H  S  L  H  E  I  T  *  F  V  E  Y  *  W  K  S  L  C  L  K  F  Y  D  Q  R  I  *  Y  A  S  G  S  G  R  S  T  E  G  S  L  *  *  Q  L  H  *  R :   N  R  Y  V  R  E  C  I  A  H  Q  T  R  S  P  P  I  E  L  I  S  E  E  L  V  K  S  T  L  C  E  *  F  R  N  E  M  I  R  N  D  G  *  G  G  A  D  G  E  A  E  L  R  T  T  A  K  R  L  T  Q  V  H  R  F  N  Y  F  F  L </first_frame>
            <second_frame>  S  N  G  *  F  A  A  N  R  N  L  H  K  P  *  P  *  S  S  S  S  G  I  P  T  A  G  C  R  R  C  F  S  T  V  R  *  *  N  E  S  F  R  H  R  *  T  F  T  G  G  I  R  P  C  R  H  G  R  G  W  F  V  W  *  R  C  A  A  V  E  E  A  G  *  G  F  S  R  C  S  V  P  Y  C  C  S  F  K  T  D  R  E  S  Y  W  *  S  R  A  S  Y  T  E  D  S  *  R  N  *  S  Y  Y  Q  S  C  *  C  Y  R   : S  S  *  R  A  S  N  Y  H  *  L  Q  G  Q  *  *  Y  V  Q  *  R  G  E  C  P  S  S  N  C  V  T  Y  F  K   : V  G  *  W  Q  P  *  C  A  K  S  W  Y  W  T  C  G  S  K  H  G  K  V  L  D  C  W  F  S  S  R  W  F  D  R  N  V  W  S  K  Y  *  N  F  E  E  F  F  W  S  Y  D  H  S  S  C  S  T  S  V  A  F  V  C  I  C  S  *  V  *  P  C  S  T   : A  C  W  R  H  P  C  S  L  E  S  C  G  R  N  W  L  S  I  E  :  G  *  P  P  *  T  S  N  F  D  Q  P  D  L  Q  S  W  L  F  S  S  T  S  T  T  C  G  S  I  F  S :   *  I  C  K  S  D  Y  V  S  S  R  I  I  S  W  W  V  D  W  K  V  R  L  Q  Y  F  K  D  P  C  R  V  W  S  D  N  *   : G  T  W  W  E  R  R  A  E  T  K  T  S  S  P  W  W  *  C  T  T   : G  R  P  C  K  A  K  S  *  *  I  C  L  F  P  V  D  V  T  S  W  W  *  A  V  T  G  Y  N  A  A  P  A  A  V  Y  A  A  A  T  V  D  A  F  A  T  F  N  A  D  A  T  T  N  :  T  Q  H  I  C  Y  A  D  A  R  I  *  S  W  S  W  S  L  Y  E  Q  :  *  P  R  S  S  Y  D  G  I  I  P  T  S  L  H  I  N  Q  P  S  S  S  R  L  L  W  S  V  L  S  S  S  T  D  V  E  A  K  G  G  L  S  H  T  S  F  Q  S  D  D  *  Y  T  Q  C  R  Q  F  L  V  V  S  L  F  G  F  L  I  *  A  L  E  M  V  G  F  G  Q  D  V  S  C  *  C  C  D  I  V  C  M  R  S  L  N  S  W  N  I  D  G  K  V  Y  A  *  S  F  T  I  S  E  S  S  T  P  L  G  A  A  D  L  L  K  G  A  Y  S  S  S  C  I  E   : E  T  G  M  *  E  N  A  L  H  I  R  R  G  H  L  P  L  N  *  F  L  K  N  L  *  K  A  L  C  A  N  D  L  E  M  R  *  S  G  M  M  D  E  G  G  P  T  E  K  Q  S  S  G  Q  Q  Q  K  D  *  H  K  F  I  G  S  I  I  S  F   </second_frame>
            <third_frame>   P  M  A  N  S  Q  Q  I  E  T  S  I  N  P  S  P  N  P  P  P  P  G  S  P  P  P  A  A  A  V  V  S  R  P  S  D  D  E  T  N  R  S  A  T  A  K  R  S  R  E  E  Y  A  P  A  A  T  D  E  A  G  L  S  G  D  D  V  P  P  L  K  K  R  V  K  V  S  Q  D  V  V  Y  R  I  V  V  P  S  R  Q  I  G  K  V  I  G  K  A  G  H  R  I  Q  K  I  R  E  E  T  K  A  T  I  K  V  A  D  A  I  A  :  R  H  E  E  R  V  I  I  I  S  S  R  D  N  D  D  M  F  S  D  A  E  N  A  L  H  Q  I  V  S  L  I  L  K  :  *  D  D  G  N  L  D  A  Q  K  V  G  T  G  H  V  A  A  N  T  V  R  F  L  I  A  G  S  Q  A  G  G  L  I  G  M  S  G  Q  N  I  E  T  L  R  N  S  S  G  A  T  I  T  V  L  A  Q  H  Q  L  P  L  C  A  S  A  H  E  S  D  R  V  V  Q  :  L  A  G  D  I  P  A  V  L  R  A  V  V  E  I  G  C  Q  L  R :   D  N  P  P  K  Q  V  I  S  I  S  P  T  Y  N  L  G  Y  S  R  P  P  Q  P  H  V  D  P  S  S   : A  E  Y  V  N  L  T  M  L  V  P  E  S  L  A  G  G  L  I  G  R  C  G  S  N  I  S  R  I  R  A  E  S  G  A  T  I  K  :  V  H  G  G  K  G  E  Q  K  Q  R  Q  V  H  L  G  G  S  A  Q  Q  :  V  A  L  A  K  Q  R  V  D  E  Y  V  Y  S  Q  L  M  L  Q  A  G  G  E  Q  L  Q  D  T  M  Q  L  Q  Q  Q  S  M  Q  L  Q  Q  S  M  H  L  Q  H  S  M  Q  M  Q  Q  Q  I :   P  N  T  S  A  T  L  M  P  G  Y  N  H  G  H  G  V  Y  M  N  S :   N  Q  E  A  H  M  M  A  S  Y  P  Q  V  Y  T  S  T  N  P  Q  A  P  G  Y  Y  G  Q  S  Y  P  A  P  Q  M  *  K  Q  K  E  V  F  L  I  H  L  F  N  Q  M  I  D  I  H  N  V  D  N  F  L  L  C  H  Y  L  G  F  *  Y  K  H  W  R  W  S  V  S  A  R  M  S  L  V  D  V  A  T  *  F  A  *  D  H  L  I  R  G  I  L  M  E  K  F  M  L  K  V  L  R  S  A  N  L  V  R  L  W  E  R  Q  I  Y  *  R  E  L  I  V  A  V  A  L  K  :  K  Q  V  C  E  R  M  H  C  T  S  D  A  V  T  S  H  *  T  D  F  *  R  T  C  K  K  H  F  V  R  M  I  *  K  *  D  D  Q  E  *  W  M  R  G  G  R  R  R  S  R  A  Q  D  N  S  K  K  I  D  T  S  S  S  V  Q  L  F  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28840" stop="29058"/>
                    <exon start="30186" stop="30244"/>
                    <exon start="30352" stop="30443"/>
                    <exon start="30562" stop="30674"/>
                    <exon start="30748" stop="30810"/>
                    <exon start="31045" stop="31205"/>
                    <exon start="31305" stop="31367"/>
                    <exon start="31684" stop="31789"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDGNLDAQKVGTGHVAANTVRFLIAGSQAGGLIGMSGQNIETLRNSSGATITVLAQHQLPLCASAHESDRVVQLAGDIPAVLRAVVEIGCQLRDNPPKQVISISPTYNLGYSRPPQPHVDPSSAEYVNLTMLVPESLAGGLIGRCGSNISRIRAESGATIKVHGGKGEQKQRQVHLGGSAQQVALAKQRVDEYVYSQLMLQAGGEQLQDTMQLQQQSMQLQQSMHLQHSMQMQQQIPNTSATLMPGYNHGHGVYMNSNQEAHMMASYPQVYTSTNPQAPGYYGQSYPAPQM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26827" stop="27186"/>
                    <exon start="27909" stop="28010"/>
                    <exon start="28837" stop="28839"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMANSQQIETSINPSPNPPPPGSPPPAAAVVSRPSDDETNRSATAKRSREEYAPAATDEAGLSGDDVPPLKKRVKVSQDVVYRIVVPSRQIGKVIGKAGHRIQKIREETKATIKVADAIARHEERVIIISSRDNDDMFSDAENALHQIVSLILK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="40408" PGL_stop="33238"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40408" e_stop="40389"/>
            <exon e_start="39721" e_stop="39609"/>
            <exon e_start="39500" e_stop="39277"/>
            <exon e_start="38815" e_stop="38743"/>
            <exon e_start="38251" e_stop="38177"/>
            <exon e_start="38087" e_stop="37977"/>
            <exon e_start="37550" e_stop="37508"/>
            <exon e_start="36902" e_stop="36809"/>
            <exon e_start="34987" e_stop="34885"/>
            <exon e_start="34806" e_stop="34711"/>
            <exon e_start="34600" e_stop="34574"/>
            <exon e_start="34309" e_stop="34210"/>
            <exon e_start="33721" e_stop="33637"/>
            <exon e_start="33558" e_stop="33238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.478" acc_prob="0.498" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.866" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.719" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40408" e_stop="40389" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40388" i_stop="39722" i_length="667"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39721" e_stop="39609" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39608" i_stop="39501" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39500" e_stop="39277" e_length="224"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="39276" i_stop="38816" i_length="461"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38815" e_stop="38743" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.899">
            <gDNA_intron_boundary i_start="38742" i_stop="38252" i_length="491"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38251" e_stop="38177" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.997">
            <gDNA_intron_boundary i_start="38176" i_stop="38088" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38087" e_stop="37977" e_length="111"/>
          </exon>
          <intron i_serial="6" don_prob="0.955" acc_prob="0.987">
            <gDNA_intron_boundary i_start="37976" i_stop="37551" i_length="426"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="37550" e_stop="37508" e_length="43"/>
          </exon>
          <intron i_serial="7" don_prob="0.478" acc_prob="0.498">
            <gDNA_intron_boundary i_start="37507" i_stop="36903" i_length="605"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="36902" e_stop="36809" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="36808" i_stop="34988" i_length="1821"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="34987" e_stop="34885" e_length="103"/>
          </exon>
          <intron i_serial="9" don_prob="0.932" acc_prob="0.993">
            <gDNA_intron_boundary i_start="34884" i_stop="34807" i_length="78"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="34806" e_stop="34711" e_length="96"/>
          </exon>
          <intron i_serial="10" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34710" i_stop="34601" i_length="110"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="34600" e_stop="34574" e_length="27"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.866">
            <gDNA_intron_boundary i_start="34573" i_stop="34310" i_length="264"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="34309" e_stop="34210" e_length="100"/>
          </exon>
          <intron i_serial="12" don_prob="0.979" acc_prob="0.719">
            <gDNA_intron_boundary i_start="34209" i_stop="33722" i_length="488"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="33721" e_stop="33637" e_length="85"/>
          </exon>
          <intron i_serial="13" don_prob="0.916" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33636" i_stop="33559" i_length="78"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="33558" e_stop="33238" e_length="321"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40408" stop="40389"/>
              <exon start="39721" stop="39609"/>
              <exon start="39500" stop="39277"/>
              <exon start="38815" stop="38743"/>
              <exon start="38251" stop="38177"/>
              <exon start="38087" stop="37977"/>
              <exon start="37550" stop="37508"/>
              <exon start="36902" stop="36809"/>
              <exon start="34987" stop="34889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40408" stop="40389"/>
              <exon start="39721" stop="39609"/>
              <exon start="39500" stop="39277"/>
              <exon start="38815" stop="38743"/>
              <exon start="38251" stop="38177"/>
              <exon start="38087" stop="37985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40408" stop="40389"/>
              <exon start="39721" stop="39609"/>
              <exon start="39500" stop="39277"/>
              <exon start="38815" stop="38743"/>
              <exon start="38251" stop="38177"/>
              <exon start="38087" stop="37985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40407" stop="40389"/>
              <exon start="39721" stop="39609"/>
              <exon start="39500" stop="39277"/>
              <exon start="38815" stop="38747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39707" stop="39609"/>
              <exon start="39500" stop="39277"/>
              <exon start="38815" stop="38743"/>
              <exon start="38251" stop="38177"/>
              <exon start="38087" stop="37977"/>
              <exon start="37550" stop="37508"/>
              <exon start="36902" stop="36809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39687" stop="39609"/>
              <exon start="39500" stop="39277"/>
              <exon start="38815" stop="38743"/>
              <exon start="38251" stop="38177"/>
              <exon start="38087" stop="37977"/>
              <exon start="37550" stop="37508"/>
              <exon start="36902" stop="36834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39636" stop="39609"/>
              <exon start="39500" stop="39277"/>
              <exon start="38815" stop="38743"/>
              <exon start="38251" stop="38177"/>
              <exon start="38087" stop="37977"/>
              <exon start="37550" stop="37508"/>
              <exon start="36902" stop="36809"/>
              <exon start="34987" stop="34885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38045" stop="37977"/>
              <exon start="37550" stop="37508"/>
              <exon start="36902" stop="36809"/>
              <exon start="34987" stop="34885"/>
              <exon start="34806" stop="34711"/>
              <exon start="34600" stop="34574"/>
              <exon start="34309" stop="34210"/>
              <exon start="33721" stop="33637"/>
              <exon start="33558" stop="33447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38045" stop="37977"/>
              <exon start="37550" stop="37508"/>
              <exon start="36902" stop="36809"/>
              <exon start="34987" stop="34885"/>
              <exon start="34806" stop="34711"/>
              <exon start="34600" stop="34574"/>
              <exon start="34309" stop="34210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34910" stop="34885"/>
              <exon start="34806" stop="34711"/>
              <exon start="34600" stop="34574"/>
              <exon start="34309" stop="34210"/>
              <exon start="33721" stop="33637"/>
              <exon start="33558" stop="33238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34599" stop="34574"/>
              <exon start="34309" stop="34210"/>
              <exon start="33721" stop="33637"/>
              <exon start="33558" stop="33259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34582" stop="34574"/>
              <exon start="34309" stop="34210"/>
              <exon start="33721" stop="33637"/>
              <exon start="33558" stop="33260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAGTTTCATATTCATCTG : ATTTAGGAGGCAGGAAAATGGGCACGTCTTCGAAGAAATCGAGGAAAGTAGAGGAGAGTGAAAGCAACTCTGAATTTGAGAATGATGAAATATTAAATGAGATGTCAGACGAT : GCCGAGAACTTTGATGACGACAGTGATGAAAACAATGACTATACAGACAATGACGATGACGTCGATCATTACAGCAATGAAGATGAAAGTGGAGAACAAGAGGAAGAGGAAGATGAGGAAGGAGATCAAGAAGAAGAAGAGCGAGAAAAACTGACTGAGGAACACAAAAATGCTGAAATGGAAGAACTTGAGAAAGAATATATGGAGCTTAGGCACAAGGAACA : AGATCTTTTGAAGAATCTGACGCAACATAAGGATGAGGATCTTCTCAAAGGTCAAGCAGTTAAAAACCAGAAG : GCTCTCTGGGACAAGACACTTGAGCTAAGATTCTTGCTGCAAAAGGCTTTCTCGAACGCCAATAGACTTCCACAG : GAACCAATTAGGTCTTCCTTTTGTGATTCAGAGGACACAGTTGAAGATGCATATACAGATCTCATTGCCTCTTCCAGAAAAACCTTGGATTCCATACTGGAATTGCAAGAG : GTACTACTGGAGAAGAATCCATCAATTACTAAATCAATGGATG : TCAATTCTGGTAAAAGGTCGAAGCTTTTGGAAGATTCTGTAAAGTCAGGTGAAGTTGATGATGATTGGCAGAAGATTTCTCAAATGCATTCAAG : GATGGCTGCTTTTAGGGATAAATCGATAGATAAATGGCAGAGAAAGACCCAGGTGACCTCTGGTGCTGCCGCGATCAAAGGCAAATTGCAAGCATTTAATCAG : GATATTAGTCAACAAGTAGCTGGTTATATGAGAGATCCTAGCAAAATGATAAAGGGAATGCAGCAAAGTAGATCGGCAGTTGCACTATTTGGAACT : GTTCCAGATGCTACTGGCAATGGAGAG : GGAACAAACATGGATGGTGATCCGGAGCTTCTGGATGACTCTGAATTCTATCAGCAATTGCTGAGGGAGTTCTTTGAGGCTGTAGATCCCGCATCATCTG : AGACAGCATTCTATGCATTGAAGAGACTACAAACAAAGAAACGAAAAATTGTTGATCGTCGTGCTTCAAAGAGTCGTAAAATCCG : GTACAATATTCATGAAAAGATTGTCAATTTTATGGCTCCTAATCAGCCTGTAAATCTTCCGGAAATGGCCCCCAAATTGTTTGAGAATTTGTTCTCAGGTGGCTCTACCCATAGGCCACTTGCTTAAGGCCCCCAGAACCGAAGGTTCCTAGAGTTGTTCCATTAGATATAAAATATGTAATTCAAATAGTTTTTACTGCACAGCTCTTTTTAATTTTTTTTCTTGTCAGTTTGTTGTTTGGGATAGATGAAAGTGATATTATCTTTGGACTAAATTTTTTTTATAGATGAAAGTTAAAGCAGCAGTTTTTCTTTCATGTT</gDNA_template>
            <first_frame> L  S  F  I  F  I  * :   F  R  R  Q  E  N  G  H  V  F  E  E  I  E  E  S  R  G  E  *  K  Q  L  *  I  *  E  *  *  N  I  K  *  D  V  R  R   : C  R  E  L  *  *  R  Q  *  *  K  Q  *  L  Y  R  Q  *  R  *  R  R  S  L  Q  Q  *  R  *  K  W  R  T  R  G  R  G  R  *  G  R  R  S  R  R  R  R  A  R  K  T  D  *  G  T  Q  K  C  *  N  G  R  T  *  E  R  I  Y  G  A  *  A  Q  G  T  :  R  S  F  E  E  S  D  A  T  *  G  *  G  S  S  Q  R  S  S  S  *  K  P  E   : G  S  L  G  Q  D  T  *  A  K  I  L  A  A  K  G  F  L  E  R  Q  *  T  S  T   : G  T  N  *  V  F  L  L  *  F  R  G  H  S  *  R  C  I  Y  R  S  H  C  L  F  Q  K  N  L  G  F  H  T  G  I  A  R   : G  T  T  G  E  E  S  I  N  Y  *  I  N  G  C :   Q  F  W  *  K  V  E  A  F  G  R  F  C  K  V  R  *  S  *  *  *  L  A  E  D  F  S  N  A  F  K  :  D  G  C  F  *  G  *  I  D  R  *  M  A  E  K  D  P  G  D  L  W  C  C  R  D  Q  R  Q  I  A  S  I  *  S   : G  Y  *  S  T  S  S  W  L  Y  E  R  S  *  Q  N  D  K  G  N  A  A  K  *  I  G  S  C  T  I  W  N   : C  S  R  C  Y  W  Q  W  R   : G  N  K  H  G  W  *  S  G  A  S  G  *  L  *  I  L  S  A  I  A  E  G  V  L  *  G  C  R  S  R  I  I  * :   D  S  I  L  C  I  E  E  T  T  N  K  E  T  K  N  C  *  S  S  C  F  K  E  S  *  N  P  :  V  Q  Y  S  *  K  D  C  Q  F  Y  G  S  *  S  A  C  K  S  S  G  N  G  P  Q  I  V  *  E  F  V  L  R  W  L  Y  P  *  A  T  C  L  R  P  P  E  P  K  V  P  R  V  V  P  L  D  I  K  Y  V  I  Q  I  V  F  T  A  Q  L  F  L  I  F  F  L  V  S  L  L  F  G  I  D  E  S  D  I  I  F  G  L  N  F  F  Y  R  *  K  L  K  Q  Q  F  F  F  H  V </first_frame>
            <second_frame>  *  V  S  Y  S  S   : D  L  G  G  R  K  M  G  T  S  S  K  K  S  R  K  V  E  E  S  E  S  N  S  E  F  E  N  D  E  I  L  N  E  M  S  D  D  :  A  E  N  F  D  D  D  S  D  E  N  N  D  Y  T  D  N  D  D  D  V  D  H  Y  S  N  E  D  E  S  G  E  Q  E  E  E  E  D  E  E  G  D  Q  E  E  E  E  R  E  K  L  T  E  E  H  K  N  A  E  M  E  E  L  E  K  E  Y  M  E  L  R  H  K  E  Q :   D  L  L  K  N  L  T  Q  H  K  D  E  D  L  L  K  G  Q  A  V  K  N  Q  K  :  A  L  W  D  K  T  L  E  L  R  F  L  L  Q  K  A  F  S  N  A  N  R  L  P  Q  :  E  P  I  R  S  S  F  C  D  S  E  D  T  V  E  D  A  Y  T  D  L  I  A  S  S  R  K  T  L  D  S  I  L  E  L  Q  E  :  V  L  L  E  K  N  P  S  I  T  K  S  M  D   : V  N  S  G  K  R  S  K  L  L  E  D  S  V  K  S  G  E  V  D  D  D  W  Q  K  I  S  Q  M  H  S  R :   M  A  A  F  R  D  K  S  I  D  K  W  Q  R  K  T  Q  V  T  S  G  A  A  A  I  K  G  K  L  Q  A  F  N  Q  :  D  I  S  Q  Q  V  A  G  Y  M  R  D  P  S  K  M  I  K  G  M  Q  Q  S  R  S  A  V  A  L  F  G  T  :  V  P  D  A  T  G  N  G  E  :  G  T  N  M  D  G  D  P  E  L  L  D  D  S  E  F  Y  Q  Q  L  L  R  E  F  F  E  A  V  D  P  A  S  S   : E  T  A  F  Y  A  L  K  R  L  Q  T  K  K  R  K  I  V  D  R  R  A  S  K  S  R  K  I  R :   Y  N  I  H  E  K  I  V  N  F  M  A  P  N  Q  P  V  N  L  P  E  M  A  P  K  L  F  E  N  L  F  S  G  G  S  T  H  R  P  L  A  *  G  P  Q  N  R  R  F  L  E  L  F  H  *  I  *  N  M  *  F  K  *  F  L  L  H  S  S  F  *  F  F  F  L  S  V  C  C  L  G  *  M  K  V  I  L  S  L  D  *  I  F  F  I  D  E  S  *  S  S  S  F  S  F  M   </second_frame>
            <third_frame>   E  F  H  I  H  L  :  I  *  E  A  G  K  W  A  R  L  R  R  N  R  G  K  *  R  R  V  K  A  T  L  N  L  R  M  M  K  Y  *  M  R  C  Q  T  M :   P  R  T  L  M  T  T  V  M  K  T  M  T  I  Q  T  M  T  M  T  S  I  I  T  A  M  K  M  K  V  E  N  K  R  K  R  K  M  R  K  E  I  K  K  K  K  S  E  K  N  *  L  R  N  T  K  M  L  K  W  K  N  L  R  K  N  I  W  S  L  G  T  R  N   : K  I  F  *  R  I  *  R  N  I  R  M  R  I  F  S  K  V  K  Q  L  K  T  R  R :   L  S  G  T  R  H  L  S  *  D  S  C  C  K  R  L  S  R  T  P  I  D  F  H  R :   N  Q  L  G  L  P  F  V  I  Q  R  T  Q  L  K  M  H  I  Q  I  S  L  P  L  P  E  K  P  W  I  P  Y  W  N  C  K  R :   Y  Y  W  R  R  I  H  Q  L  L  N  Q  W  M  :  S  I  L  V  K  G  R  S  F  W  K  I  L  *  S  Q  V  K  L  M  M  I  G  R  R  F  L  K  C  I  Q   : G  W  L  L  L  G  I  N  R  *  I  N  G  R  E  R  P  R  *  P  L  V  L  P  R  S  K  A  N  C  K  H  L  I  R :   I  L  V  N  K  *  L  V  I  *  E  I  L  A  K  *  *  R  E  C  S  K  V  D  R  Q  L  H  Y  L  E  L :   F  Q  M  L  L  A  M  E  R :   E  Q  T  W  M  V  I  R  S  F  W  M  T  L  N  S  I  S  N  C  *  G  S  S  L  R  L  *  I  P  H  H  L  :  R  Q  H  S  M  H  *  R  D  Y  K  Q  R  N  E  K  L  L  I  V  V  L  Q  R  V  V  K  S   : G  T  I  F  M  K  R  L  S  I  L  W  L  L  I  S  L  *  I  F  R  K  W  P  P  N  C  L  R  I  C  S  Q  V  A  L  P  I  G  H  L  L  K  A  P  R  T  E  G  S  *  S  C  S  I  R  Y  K  I  C  N  S  N  S  F  Y  C  T  A  L  F  N  F  F  S  C  Q  F  V  V  W  D  R  *  K  *  Y  Y  L  W  T  K  F  F  L  *  M  K  V  K  A  A  V  F  L  S  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40404" stop="40389"/>
                    <exon start="39721" stop="39609"/>
                    <exon start="39500" stop="39277"/>
                    <exon start="38815" stop="38743"/>
                    <exon start="38251" stop="38177"/>
                    <exon start="38087" stop="37977"/>
                    <exon start="37550" stop="37508"/>
                    <exon start="36902" stop="36809"/>
                    <exon start="34987" stop="34885"/>
                    <exon start="34806" stop="34711"/>
                    <exon start="34600" stop="34574"/>
                    <exon start="34309" stop="34210"/>
                    <exon start="33721" stop="33637"/>
                    <exon start="33558" stop="33432"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1284</number_coding_nucleotides>
                  <number_encoded_amino_acids>428</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSYSSDLGGRKMGTSSKKSRKVEESESNSEFENDEILNEMSDDAENFDDDSDENNDYTDNDDDVDHYSNEDESGEQEEEEDEEGDQEEEEREKLTEEHKNAEMEELEKEYMELRHKEQDLLKNLTQHKDEDLLKGQAVKNQKALWDKTLELRFLLQKAFSNANRLPQEPIRSSFCDSEDTVEDAYTDLIASSRKTLDSILELQEVLLEKNPSITKSMDVNSGKRSKLLEDSVKSGEVDDDWQKISQMHSRMAAFRDKSIDKWQRKTQVTSGAAAIKGKLQAFNQDISQQVAGYMRDPSKMIKGMQQSRSAVALFGTVPDATGNGEGTNMDGDPELLDDSEFYQQLLREFFEAVDPASSETAFYALKRLQTKKRKIVDRRASKSRKIRYNIHEKIVNFMAPNQPVNLPEMAPKLFENLFSGGSTHRPLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39730" e_stop="39609"/>
            <exon e_start="39500" e_stop="39277"/>
            <exon e_start="38815" e_stop="38743"/>
            <exon e_start="38251" e_stop="38177"/>
            <exon e_start="38087" e_stop="37977"/>
            <exon e_start="37550" e_stop="37508"/>
            <exon e_start="36902" e_stop="36809"/>
            <exon e_start="34987" e_stop="34885"/>
            <exon e_start="34806" e_stop="34711"/>
            <exon e_start="34600" e_stop="34574"/>
            <exon e_start="34309" e_stop="34210"/>
            <exon e_start="33721" e_stop="33637"/>
            <exon e_start="33558" e_stop="33238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.478" acc_prob="0.498" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.866" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.719" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39730" e_stop="39609" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39608" i_stop="39501" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39500" e_stop="39277" e_length="224"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="39276" i_stop="38816" i_length="461"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38815" e_stop="38743" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.899">
            <gDNA_intron_boundary i_start="38742" i_stop="38252" i_length="491"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38251" e_stop="38177" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.997">
            <gDNA_intron_boundary i_start="38176" i_stop="38088" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38087" e_stop="37977" e_length="111"/>
          </exon>
          <intron i_serial="5" don_prob="0.955" acc_prob="0.987">
            <gDNA_intron_boundary i_start="37976" i_stop="37551" i_length="426"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="37550" e_stop="37508" e_length="43"/>
          </exon>
          <intron i_serial="6" don_prob="0.478" acc_prob="0.498">
            <gDNA_intron_boundary i_start="37507" i_stop="36903" i_length="605"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="36902" e_stop="36809" e_length="94"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="36808" i_stop="34988" i_length="1821"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="34987" e_stop="34885" e_length="103"/>
          </exon>
          <intron i_serial="8" don_prob="0.932" acc_prob="0.993">
            <gDNA_intron_boundary i_start="34884" i_stop="34807" i_length="78"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="34806" e_stop="34711" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34710" i_stop="34601" i_length="110"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="34600" e_stop="34574" e_length="27"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.866">
            <gDNA_intron_boundary i_start="34573" i_stop="34310" i_length="264"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="34309" e_stop="34210" e_length="100"/>
          </exon>
          <intron i_serial="11" don_prob="0.979" acc_prob="0.719">
            <gDNA_intron_boundary i_start="34209" i_stop="33722" i_length="488"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="33721" e_stop="33637" e_length="85"/>
          </exon>
          <intron i_serial="12" don_prob="0.916" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33636" i_stop="33559" i_length="78"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="33558" e_stop="33238" e_length="321"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39730" stop="39609"/>
              <exon start="39500" stop="39277"/>
              <exon start="38815" stop="38748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39707" stop="39609"/>
              <exon start="39500" stop="39277"/>
              <exon start="38815" stop="38743"/>
              <exon start="38251" stop="38177"/>
              <exon start="38087" stop="37977"/>
              <exon start="37550" stop="37508"/>
              <exon start="36902" stop="36809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39687" stop="39609"/>
              <exon start="39500" stop="39277"/>
              <exon start="38815" stop="38743"/>
              <exon start="38251" stop="38177"/>
              <exon start="38087" stop="37977"/>
              <exon start="37550" stop="37508"/>
              <exon start="36902" stop="36834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39636" stop="39609"/>
              <exon start="39500" stop="39277"/>
              <exon start="38815" stop="38743"/>
              <exon start="38251" stop="38177"/>
              <exon start="38087" stop="37977"/>
              <exon start="37550" stop="37508"/>
              <exon start="36902" stop="36809"/>
              <exon start="34987" stop="34885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38045" stop="37977"/>
              <exon start="37550" stop="37508"/>
              <exon start="36902" stop="36809"/>
              <exon start="34987" stop="34885"/>
              <exon start="34806" stop="34711"/>
              <exon start="34600" stop="34574"/>
              <exon start="34309" stop="34210"/>
              <exon start="33721" stop="33637"/>
              <exon start="33558" stop="33447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38045" stop="37977"/>
              <exon start="37550" stop="37508"/>
              <exon start="36902" stop="36809"/>
              <exon start="34987" stop="34885"/>
              <exon start="34806" stop="34711"/>
              <exon start="34600" stop="34574"/>
              <exon start="34309" stop="34210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34910" stop="34885"/>
              <exon start="34806" stop="34711"/>
              <exon start="34600" stop="34574"/>
              <exon start="34309" stop="34210"/>
              <exon start="33721" stop="33637"/>
              <exon start="33558" stop="33238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34599" stop="34574"/>
              <exon start="34309" stop="34210"/>
              <exon start="33721" stop="33637"/>
              <exon start="33558" stop="33259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34582" stop="34574"/>
              <exon start="34309" stop="34210"/>
              <exon start="33721" stop="33637"/>
              <exon start="33558" stop="33260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTCAGATTTAGGAGGCAGGAAAATGGGCACGTCTTCGAAGAAATCGAGGAAAGTAGAGGAGAGTGAAAGCAACTCTGAATTTGAGAATGATGAAATATTAAATGAGATGTCAGACGAT : GCCGAGAACTTTGATGACGACAGTGATGAAAACAATGACTATACAGACAATGACGATGACGTCGATCATTACAGCAATGAAGATGAAAGTGGAGAACAAGAGGAAGAGGAAGATGAGGAAGGAGATCAAGAAGAAGAAGAGCGAGAAAAACTGACTGAGGAACACAAAAATGCTGAAATGGAAGAACTTGAGAAAGAATATATGGAGCTTAGGCACAAGGAACA : AGATCTTTTGAAGAATCTGACGCAACATAAGGATGAGGATCTTCTCAAAGGTCAAGCAGTTAAAAACCAGAAG : GCTCTCTGGGACAAGACACTTGAGCTAAGATTCTTGCTGCAAAAGGCTTTCTCGAACGCCAATAGACTTCCACAG : GAACCAATTAGGTCTTCCTTTTGTGATTCAGAGGACACAGTTGAAGATGCATATACAGATCTCATTGCCTCTTCCAGAAAAACCTTGGATTCCATACTGGAATTGCAAGAG : GTACTACTGGAGAAGAATCCATCAATTACTAAATCAATGGATG : TCAATTCTGGTAAAAGGTCGAAGCTTTTGGAAGATTCTGTAAAGTCAGGTGAAGTTGATGATGATTGGCAGAAGATTTCTCAAATGCATTCAAG : GATGGCTGCTTTTAGGGATAAATCGATAGATAAATGGCAGAGAAAGACCCAGGTGACCTCTGGTGCTGCCGCGATCAAAGGCAAATTGCAAGCATTTAATCAG : GATATTAGTCAACAAGTAGCTGGTTATATGAGAGATCCTAGCAAAATGATAAAGGGAATGCAGCAAAGTAGATCGGCAGTTGCACTATTTGGAACT : GTTCCAGATGCTACTGGCAATGGAGAG : GGAACAAACATGGATGGTGATCCGGAGCTTCTGGATGACTCTGAATTCTATCAGCAATTGCTGAGGGAGTTCTTTGAGGCTGTAGATCCCGCATCATCTG : AGACAGCATTCTATGCATTGAAGAGACTACAAACAAAGAAACGAAAAATTGTTGATCGTCGTGCTTCAAAGAGTCGTAAAATCCG : GTACAATATTCATGAAAAGATTGTCAATTTTATGGCTCCTAATCAGCCTGTAAATCTTCCGGAAATGGCCCCCAAATTGTTTGAGAATTTGTTCTCAGGTGGCTCTACCCATAGGCCACTTGCTTAAGGCCCCCAGAACCGAAGGTTCCTAGAGTTGTTCCATTAGATATAAAATATGTAATTCAAATAGTTTTTACTGCACAGCTCTTTTTAATTTTTTTTCTTGTCAGTTTGTTGTTTGGGATAGATGAAAGTGATATTATCTTTGGACTAAATTTTTTTTATAGATGAAAGTTAAAGCAGCAGTTTTTCTTTCATGTT</gDNA_template>
            <first_frame> F  L  Q  I  *  E  A  G  K  W  A  R  L  R  R  N  R  G  K  *  R  R  V  K  A  T  L  N  L  R  M  M  K  Y  *  M  R  C  Q  T  M :   P  R  T  L  M  T  T  V  M  K  T  M  T  I  Q  T  M  T  M  T  S  I  I  T  A  M  K  M  K  V  E  N  K  R  K  R  K  M  R  K  E  I  K  K  K  K  S  E  K  N  *  L  R  N  T  K  M  L  K  W  K  N  L  R  K  N  I  W  S  L  G  T  R  N   : K  I  F  *  R  I  *  R  N  I  R  M  R  I  F  S  K  V  K  Q  L  K  T  R  R :   L  S  G  T  R  H  L  S  *  D  S  C  C  K  R  L  S  R  T  P  I  D  F  H  R :   N  Q  L  G  L  P  F  V  I  Q  R  T  Q  L  K  M  H  I  Q  I  S  L  P  L  P  E  K  P  W  I  P  Y  W  N  C  K  R :   Y  Y  W  R  R  I  H  Q  L  L  N  Q  W  M  :  S  I  L  V  K  G  R  S  F  W  K  I  L  *  S  Q  V  K  L  M  M  I  G  R  R  F  L  K  C  I  Q   : G  W  L  L  L  G  I  N  R  *  I  N  G  R  E  R  P  R  *  P  L  V  L  P  R  S  K  A  N  C  K  H  L  I  R :   I  L  V  N  K  *  L  V  I  *  E  I  L  A  K  *  *  R  E  C  S  K  V  D  R  Q  L  H  Y  L  E  L :   F  Q  M  L  L  A  M  E  R :   E  Q  T  W  M  V  I  R  S  F  W  M  T  L  N  S  I  S  N  C  *  G  S  S  L  R  L  *  I  P  H  H  L  :  R  Q  H  S  M  H  *  R  D  Y  K  Q  R  N  E  K  L  L  I  V  V  L  Q  R  V  V  K  S   : G  T  I  F  M  K  R  L  S  I  L  W  L  L  I  S  L  *  I  F  R  K  W  P  P  N  C  L  R  I  C  S  Q  V  A  L  P  I  G  H  L  L  K  A  P  R  T  E  G  S  *  S  C  S  I  R  Y  K  I  C  N  S  N  S  F  Y  C  T  A  L  F  N  F  F  S  C  Q  F  V  V  W  D  R  *  K  *  Y  Y  L  W  T  K  F  F  L  *  M  K  V  K  A  A  V  F  L  S  C  </first_frame>
            <second_frame>  F  F  R  F  R  R  Q  E  N  G  H  V  F  E  E  I  E  E  S  R  G  E  *  K  Q  L  *  I  *  E  *  *  N  I  K  *  D  V  R  R   : C  R  E  L  *  *  R  Q  *  *  K  Q  *  L  Y  R  Q  *  R  *  R  R  S  L  Q  Q  *  R  *  K  W  R  T  R  G  R  G  R  *  G  R  R  S  R  R  R  R  A  R  K  T  D  *  G  T  Q  K  C  *  N  G  R  T  *  E  R  I  Y  G  A  *  A  Q  G  T  :  R  S  F  E  E  S  D  A  T  *  G  *  G  S  S  Q  R  S  S  S  *  K  P  E   : G  S  L  G  Q  D  T  *  A  K  I  L  A  A  K  G  F  L  E  R  Q  *  T  S  T   : G  T  N  *  V  F  L  L  *  F  R  G  H  S  *  R  C  I  Y  R  S  H  C  L  F  Q  K  N  L  G  F  H  T  G  I  A  R   : G  T  T  G  E  E  S  I  N  Y  *  I  N  G  C :   Q  F  W  *  K  V  E  A  F  G  R  F  C  K  V  R  *  S  *  *  *  L  A  E  D  F  S  N  A  F  K  :  D  G  C  F  *  G  *  I  D  R  *  M  A  E  K  D  P  G  D  L  W  C  C  R  D  Q  R  Q  I  A  S  I  *  S   : G  Y  *  S  T  S  S  W  L  Y  E  R  S  *  Q  N  D  K  G  N  A  A  K  *  I  G  S  C  T  I  W  N   : C  S  R  C  Y  W  Q  W  R   : G  N  K  H  G  W  *  S  G  A  S  G  *  L  *  I  L  S  A  I  A  E  G  V  L  *  G  C  R  S  R  I  I  * :   D  S  I  L  C  I  E  E  T  T  N  K  E  T  K  N  C  *  S  S  C  F  K  E  S  *  N  P  :  V  Q  Y  S  *  K  D  C  Q  F  Y  G  S  *  S  A  C  K  S  S  G  N  G  P  Q  I  V  *  E  F  V  L  R  W  L  Y  P  *  A  T  C  L  R  P  P  E  P  K  V  P  R  V  V  P  L  D  I  K  Y  V  I  Q  I  V  F  T  A  Q  L  F  L  I  F  F  L  V  S  L  L  F  G  I  D  E  S  D  I  I  F  G  L  N  F  F  Y  R  *  K  L  K  Q  Q  F  F  F  H  V </second_frame>
            <third_frame>   S  S  D  L  G  G  R  K  M  G  T  S  S  K  K  S  R  K  V  E  E  S  E  S  N  S  E  F  E  N  D  E  I  L  N  E  M  S  D  D  :  A  E  N  F  D  D  D  S  D  E  N  N  D  Y  T  D  N  D  D  D  V  D  H  Y  S  N  E  D  E  S  G  E  Q  E  E  E  E  D  E  E  G  D  Q  E  E  E  E  R  E  K  L  T  E  E  H  K  N  A  E  M  E  E  L  E  K  E  Y  M  E  L  R  H  K  E  Q :   D  L  L  K  N  L  T  Q  H  K  D  E  D  L  L  K  G  Q  A  V  K  N  Q  K  :  A  L  W  D  K  T  L  E  L  R  F  L  L  Q  K  A  F  S  N  A  N  R  L  P  Q  :  E  P  I  R  S  S  F  C  D  S  E  D  T  V  E  D  A  Y  T  D  L  I  A  S  S  R  K  T  L  D  S  I  L  E  L  Q  E  :  V  L  L  E  K  N  P  S  I  T  K  S  M  D   : V  N  S  G  K  R  S  K  L  L  E  D  S  V  K  S  G  E  V  D  D  D  W  Q  K  I  S  Q  M  H  S  R :   M  A  A  F  R  D  K  S  I  D  K  W  Q  R  K  T  Q  V  T  S  G  A  A  A  I  K  G  K  L  Q  A  F  N  Q  :  D  I  S  Q  Q  V  A  G  Y  M  R  D  P  S  K  M  I  K  G  M  Q  Q  S  R  S  A  V  A  L  F  G  T  :  V  P  D  A  T  G  N  G  E  :  G  T  N  M  D  G  D  P  E  L  L  D  D  S  E  F  Y  Q  Q  L  L  R  E  F  F  E  A  V  D  P  A  S  S   : E  T  A  F  Y  A  L  K  R  L  Q  T  K  K  R  K  I  V  D  R  R  A  S  K  S  R  K  I  R :   Y  N  I  H  E  K  I  V  N  F  M  A  P  N  Q  P  V  N  L  P  E  M  A  P  K  L  F  E  N  L  F  S  G  G  S  T  H  R  P  L  A  *  G  P  Q  N  R  R  F  L  E  L  F  H  *  I  *  N  M  *  F  K  *  F  L  L  H  S  S  F  *  F  F  F  L  S  V  C  C  L  G  *  M  K  V  I  L  S  L  D  *  I  F  F  I  D  E  S  *  S  S  S  F  S  F  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39728" stop="39609"/>
                    <exon start="39500" stop="39277"/>
                    <exon start="38815" stop="38743"/>
                    <exon start="38251" stop="38177"/>
                    <exon start="38087" stop="37977"/>
                    <exon start="37550" stop="37508"/>
                    <exon start="36902" stop="36809"/>
                    <exon start="34987" stop="34885"/>
                    <exon start="34806" stop="34711"/>
                    <exon start="34600" stop="34574"/>
                    <exon start="34309" stop="34210"/>
                    <exon start="33721" stop="33637"/>
                    <exon start="33558" stop="33432"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSDLGGRKMGTSSKKSRKVEESESNSEFENDEILNEMSDDAENFDDDSDENNDYTDNDDDVDHYSNEDESGEQEEEEDEEGDQEEEEREKLTEEHKNAEMEELEKEYMELRHKEQDLLKNLTQHKDEDLLKGQAVKNQKALWDKTLELRFLLQKAFSNANRLPQEPIRSSFCDSEDTVEDAYTDLIASSRKTLDSILELQEVLLEKNPSITKSMDVNSGKRSKLLEDSVKSGEVDDDWQKISQMHSRMAAFRDKSIDKWQRKTQVTSGAAAIKGKLQAFNQDISQQVAGYMRDPSKMIKGMQQSRSAVALFGTVPDATGNGEGTNMDGDPELLDDSEFYQQLLREFFEAVDPASSETAFYALKRLQTKKRKIVDRRASKSRKIRYNIHEKIVNFMAPNQPVNLPEMAPKLFENLFSGGSTHRPLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="39699" PGL_stop="40147"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39699" e_stop="40147"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="39699" e_stop="40147" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39699" stop="40147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612961" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCCATTTTCCTGCCTCCTAAATCTGAAGAAACAAAAAAAGAATTCATCATTTATCAATCGGGTAATTACACTCGCGACAAGACAAAAACACAAAGCCTAATTTTTTGAAAACTAATATGTAAAAGGTAGAGCTGGAAATCACGAGACACACTCTAAAGTCCTCAAGATGGCAATAGGCGTTTCATTTTCACAGGGATAGCACTTCAATATGTGAAGTACTCTCCTTGTGCAGTATGTCATGACATGGCTCAATGCACACTTCTTTTACCCTTATGGTGTCCACCTTTACGCCCCCAAAAAATCTTATTCCTTGGGTGTTCACCTTATGAAGTATGATACTATCTCTATCAATTCACAATCTTGATAGAGCAAAGTTTACTCCTTTAGACATATTATCGAACACATTGTCTACAATACAATAGTTGGGGTCCTTAGGAACCAAAAAAAC</gDNA_template>
            <first_frame> A  H  F  P  A  S  *  I  *  R  N  K  K  R  I  H  H  L  S  I  G  *  L  H  S  R  Q  D  K  N  T  K  P  N  F  L  K  T  N  M  *  K  V  E  L  E  I  T  R  H  T  L  K  S  S  R  W  Q  *  A  F  H  F  H  R  D  S  T  S  I  C  E  V  L  S  L  C  S  M  S  *  H  G  S  M  H  T  S  F  T  L  M  V  S  T  F  T  P  P  K  N  L  I  P  W  V  F  T  L  *  S  M  I  L  S  L  S  I  H  N  L  D  R  A  K  F  T  P  L  D  I  L  S  N  T  L  S  T  I  Q  *  L  G  S  L  G  T  K  K   </first_frame>
            <second_frame>  P  I  F  L  P  P  K  S  E  E  T  K  K  E  F  I  I  Y  Q  S  G  N  Y  T  R  D  K  T  K  T  Q  S  L  I  F  *  K  L  I  C  K  R  *  S  W  K  S  R  D  T  L  *  S  P  Q  D  G  N  R  R  F  I  F  T  G  I  A  L  Q  Y  V  K  Y  S  P  C  A  V  C  H  D  M  A  Q  C  T  L  L  L  P  L  W  C  P  P  L  R  P  Q  K  I  L  F  L  G  C  S  P  Y  E  V  *  Y  Y  L  Y  Q  F  T  I  L  I  E  Q  S  L  L  L  *  T  Y  Y  R  T  H  C  L  Q  Y  N  S  W  G  P  *  E  P  K  K  </second_frame>
            <third_frame>   P  F  S  C  L  L  N  L  K  K  Q  K  K  N  S  S  F  I  N  R  V  I  T  L  A  T  R  Q  K  H  K  A  *  F  F  E  N  *  Y  V  K  G  R  A  G  N  H  E  T  H  S  K  V  L  K  M  A  I  G  V  S  F  S  Q  G  *  H  F  N  M  *  S  T  L  L  V  Q  Y  V  M  T  W  L  N  A  H  F  F  Y  P  Y  G  V  H  L  Y  A  P  K  K  S  Y  S  L  G  V  H  L  M  K  Y  D  T  I  S  I  N  S  Q  S  *  *  S  K  V  Y  S  F  R  H  I  I  E  H  I  V  Y  N  T  I  V  G  V  L  R  N  Q  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0329A12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="48735" PGL_stop="49383"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48735" e_stop="49383"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="48735" e_stop="49383" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48735" stop="49383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48736" stop="49120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAATAGGTGGAGTTTCAAGTCATTCAGAACGAGAGAGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGTACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTATAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  I  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  S  *  F  *  K  M  V  C  C  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  *  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  *  V  E  F  Q  V  I  Q  N  E  R  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  V  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  P  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  E  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  Y  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  L  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  I  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48766" stop="49383"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEFQVIQNERDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYVLQVAEEVDTSEPSTYKEAILSPDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="49394" PGL_stop="50201"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49394" e_stop="50201"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="49394" e_stop="50201" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49394" stop="50201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTAGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  *  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  R  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49396" stop="50199"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYARDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="53943" PGL_stop="56142"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53943" e_stop="54330"/>
            <exon e_start="54543" e_stop="54856"/>
            <exon e_start="55134" e_stop="55213"/>
            <exon e_start="55614" e_stop="56142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="0.997"/>
          <exon-intron don_prob="0.950" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="53943" e_stop="54330" e_length="388"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54331" i_stop="54542" i_length="212"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54543" e_stop="54856" e_length="314"/>
          </exon>
          <intron i_serial="2" don_prob="0.950" acc_prob="0.978">
            <gDNA_intron_boundary i_start="54857" i_stop="55133" i_length="277"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55134" e_stop="55213" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="55214" i_stop="55613" i_length="400"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55614" e_stop="56142" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53943" stop="54330"/>
              <exon start="54543" stop="54856"/>
              <exon start="55134" stop="55213"/>
              <exon start="55614" stop="56142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54042" stop="54330"/>
              <exon start="54543" stop="54856"/>
              <exon start="55134" stop="55213"/>
              <exon start="55614" stop="56142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54206" stop="54330"/>
              <exon start="54543" stop="54856"/>
              <exon start="55134" stop="55184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54206" stop="54330"/>
              <exon start="54543" stop="54759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCCTACAAACTGTATTTGCACTAGCCAAAGGAAAAAAGCTGTAACTCTTCTGCTACAAAAGGGAACACCCCATTTCTCTTCGTTCTGTCCCCTCTTCCTCCCTTACCCCACCCCCACCACCATTTCAAACCCCATAGCAAGAAAACCACCATTTTCTTTCTTCTCTTCTAAAAAAGGGGAAGAAAGAAGAAAAAAATAGTGGAATTTTTTGGTTTTCTCAGAGGAGGAAAAAAACAGAGCAAGAAAGATGAGTAGTGAAAAAGAAGATGGTTTAGGTTTGAGTTTGAGCTTAGGAATCATGAGTTGCCCTCAGAATAATCATAAAACTACACCTTCTTTACCTTTGAATCTCTTGCCTTTCATGCATCATCATCAAGTTTCTTCAG : GGAGAAAAGATGAAGGTGGAGAAAGGGTAAGAGGGGGAATAGATATGAATGAACCAGCGAGGATGATAATAGAGTGTGATGATGAAGAAGATGAAGAAGAAGATCAGGTGTTAATGGTTTCCTCACCTAACAGCACTGTTTCTAGTGTGAGTGGAAAGAGGAGTCATGACAGAGAAGAGAACGAAGGGGAAAGGGCCACCAGCTCACTGGAGGACGACGGCGGAGATGCGGCGGCAAGGAAGAAACTCCGGTTGTCTAAGGAGCAAGCTGCCGTTCTTGAAGAGACATTCAAGGAGCATAACACACTTAATCCG : AAGCAAAAATTGGCTCTGTCAAAACAGCTGAATCTCAGGCCAAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGGGCAAG : GACTAAGTTGAAGCAAACCGAAGTTGATTGTGAGTATTTGAAGCGTTGCTGCGAAAATCTAACGGATGAAAACCGACGTTTGCAGAAAGAAGTTAGTGAGCTTAGAGCATTGAAACTTTCTCCACAGTTTTACATGAACATGAGCCCTCCAACAACCCTTACAATGTGCCCTCAATGCGAGCGCGTAGCTGTATCATCTTCTTCGTCCTCATCGTCAGTAGTCAACGCCACTCGCGCTCAGAACCACCAAGCGCCGGTGCCTATGAACAAGCCATGGGCTGCAATGTTCGCTTCTAAAACACTGGATGTGCAGAGGTCACAAATGTAACTTCAGTATTGTGTTGGGTAGAGGAAGTGTTTATAGAGCAAGGAGATGATTTACAAGAGATGTGTTGGGTTGGGTTTTGAGAGGAACAGTTTGTTGAATTTGTTCATTTTATTTGTGTAGGAAAATGGTTTTTACTTGTATGGTAAGAGACATAATTGTGTTTACTAAACTATTTTTATTATTATATTATATAGTATTAGT</gDNA_template>
            <first_frame> Y  P  T  N  C  I  C  T  S  Q  R  K  K  A  V  T  L  L  L  Q  K  G  T  P  H  F  S  S  F  C  P  L  F  L  P  Y  P  T  P  T  T  I  S  N  P  I  A  R  K  P  P  F  S  F  F  S  S  K  K  G  E  E  R  R  K  K  *  W  N  F  L  V  F  S  E  E  E  K  N  R  A  R  K  M  S  S  E  K  E  D  G  L  G  L  S  L  S  L  G  I  M  S  C  P  Q  N  N  H  K  T  T  P  S  L  P  L  N  L  L  P  F  M  H  H  H  Q  V  S  S   : G  R  K  D  E  G  G  E  R  V  R  G  G  I  D  M  N  E  P  A  R  M  I  I  E  C  D  D  E  E  D  E  E  E  D  Q  V  L  M  V  S  S  P  N  S  T  V  S  S  V  S  G  K  R  S  H  D  R  E  E  N  E  G  E  R  A  T  S  S  L  E  D  D  G  G  D  A  A  A  R  K  K  L  R  L  S  K  E  Q  A  A  V  L  E  E  T  F  K  E  H  N  T  L  N  P  :  K  Q  K  L  A  L  S  K  Q  L  N  L  R  P  R  Q  V  E  V  W  F  Q  N  R  R  A  R :   T  K  L  K  Q  T  E  V  D  C  E  Y  L  K  R  C  C  E  N  L  T  D  E  N  R  R  L  Q  K  E  V  S  E  L  R  A  L  K  L  S  P  Q  F  Y  M  N  M  S  P  P  T  T  L  T  M  C  P  Q  C  E  R  V  A  V  S  S  S  S  S  S  S  S  V  V  N  A  T  R  A  Q  N  H  Q  A  P  V  P  M  N  K  P  W  A  A  M  F  A  S  K  T  L  D  V  Q  R  S  Q  M  *  L  Q  Y  C  V  G  *  R  K  C  L  *  S  K  E  M  I  Y  K  R  C  V  G  L  G  F  E  R  N  S  L  L  N  L  F  I  L  F  V  *  E  N  G  F  Y  L  Y  G  K  R  H  N  C  V  Y  *  T  I  F  I  I  I  L  Y  S  I  S </first_frame>
            <second_frame>  I  L  Q  T  V  F  A  L  A  K  G  K  K  L  *  L  F  C  Y  K  R  E  H  P  I  S  L  R  S  V  P  S  S  S  L  T  P  P  P  P  P  F  Q  T  P  *  Q  E  N  H  H  F  L  S  S  L  L  K  K  G  K  K  E  E  K  N  S  G  I  F  W  F  S  Q  R  R  K  K  T  E  Q  E  R  *  V  V  K  K  K  M  V  *  V  *  V  *  A  *  E  S  *  V  A  L  R  I  I  I  K  L  H  L  L  Y  L  *  I  S  C  L  S  C  I  I  I  K  F  L  Q  :  G  E  K  M  K  V  E  K  G  *  E  G  E  *  I  *  M  N  Q  R  G  *  *  *  S  V  M  M  K  K  M  K  K  K  I  R  C  *  W  F  P  H  L  T  A  L  F  L  V  *  V  E  R  G  V  M  T  E  K  R  T  K  G  K  G  P  P  A  H  W  R  T  T  A  E  M  R  R  Q  G  R  N  S  G  C  L  R  S  K  L  P  F  L  K  R  H  S  R  S  I  T  H  L  I  R :   S  K  N  W  L  C  Q  N  S  *  I  S  G  Q  D  K  W  R  C  G  F  R  T  E  G  Q   : G  L  S  *  S  K  P  K  L  I  V  S  I  *  S  V  A  A  K  I  *  R  M  K  T  D  V  C  R  K  K  L  V  S  L  E  H  *  N  F  L  H  S  F  T  *  T  *  A  L  Q  Q  P  L  Q  C  A  L  N  A  S  A  *  L  Y  H  L  L  R  P  H  R  Q  *  S  T  P  L  A  L  R  T  T  K  R  R  C  L  *  T  S  H  G  L  Q  C  S  L  L  K  H  W  M  C  R  G  H  K  C  N  F  S  I  V  L  G  R  G  S  V  Y  R  A  R  R  *  F  T  R  D  V  L  G  W  V  L  R  G  T  V  C  *  I  C  S  F  Y  L  C  R  K  M  V  F  T  C  M  V  R  D  I  I  V  F  T  K  L  F  L  L  L  Y  Y  I  V  L   </second_frame>
            <third_frame>   S  Y  K  L  Y  L  H  *  P  K  E  K  S  C  N  S  S  A  T  K  G  N  T  P  F  L  F  V  L  S  P  L  P  P  L  P  H  P  H  H  H  F  K  P  H  S  K  K  T  T  I  F  F  L  L  F  *  K  R  G  R  K  K  K  K  I  V  E  F  F  G  F  L  R  G  G  K  K  Q  S  K  K  D  E  *  *  K  R  R  W  F  R  F  E  F  E  L  R  N  H  E  L  P  S  E  *  S  *  N  Y  T  F  F  T  F  E  S  L  A  F  H  A  S  S  S  S  F  F  R :   E  K  R  *  R  W  R  K  G  K  R  G  N  R  Y  E  *  T  S  E  D  D  N  R  V  *  *  *  R  R  *  R  R  R  S  G  V  N  G  F  L  T  *  Q  H  C  F  *  C  E  W  K  E  E  S  *  Q  R  R  E  R  R  G  K  G  H  Q  L  T  G  G  R  R  R  R  C  G  G  K  E  E  T  P  V  V  *  G  A  S  C  R  S  *  R  D  I  Q  G  A  *  H  T  *  S   : E  A  K  I  G  S  V  K  T  A  E  S  Q  A  K  T  S  G  G  V  V  S  E  Q  K  G  K  :  D  *  V  E  A  N  R  S  *  L  *  V  F  E  A  L  L  R  K  S  N  G  *  K  P  T  F  A  E  R  S  *  *  A  *  S  I  E  T  F  S  T  V  L  H  E  H  E  P  S  N  N  P  Y  N  V  P  S  M  R  A  R  S  C  I  I  F  F  V  L  I  V  S  S  Q  R  H  S  R  S  E  P  P  S  A  G  A  Y  E  Q  A  M  G  C  N  V  R  F  *  N  T  G  C  A  E  V  T  N  V  T  S  V  L  C  W  V  E  E  V  F  I  E  Q  G  D  D  L  Q  E  M  C  W  V  G  F  *  E  E  Q  F  V  E  F  V  H  F  I  C  V  G  K  W  F  L  L  V  W  *  E  T  *  L  C  L  L  N  Y  F  Y  Y  Y  I  I  *  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54144" stop="54330"/>
                    <exon start="54543" stop="54856"/>
                    <exon start="55134" stop="55213"/>
                    <exon start="55614" stop="55941"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>906</number_coding_nucleotides>
                  <number_encoded_amino_acids>302</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WNFLVFSEEEKNRARKMSSEKEDGLGLSLSLGIMSCPQNNHKTTPSLPLNLLPFMHHHQVSSGRKDEGGERVRGGIDMNEPARMIIECDDEEDEEEDQVLMVSSPNSTVSSVSGKRSHDREENEGERATSSLEDDGGDAAARKKLRLSKEQAAVLEETFKEHNTLNPKQKLALSKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKLSPQFYMNMSPPTTLTMCPQCERVAVSSSSSSSSVVNATRAQNHQAPVPMNKPWAAMFASKTLDVQRSQM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53943" stop="54143"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPTNCICTSQRKKAVTLLLQKGTPHFSSFCPLFLPYPTPTTISNPIARKPPFSFFSSKKGEERRKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="55432" e_stop="56142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="55432" e_stop="56142" e_length="711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55432" stop="56142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724089" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTAGAAAAATTAATCCCATTTTTCTTTGATCAAACAACATAAATGTATCATATTTGTAAAAAAAAAAACAGCTTTACTATATTCTTGGTATTAATTTAAGTTTTTGAAGTCTGACTAATTCAGATTTACGATGACTTGAATATTTACGCTTGATGTTATTGCTCGATTTGATTGATTCAGGACTAAGTTGAAGCAAACCGAAGTTGATTGTGAGTATTTGAAGCGTTGCTGCGAAAATCTAACGGATGAAAACCGACGTTTGCAGAAAGAAGTTAGTGAGCTTAGAGCATTGAAACTTTCTCCACAGTTTTACATGAACATGAGCCCTCCAACAACCCTTACAATGTGCCCTCAATGCGAGCGCGTAGCTGTATCATCTTCTTCGTCCTCATCGTCAGTAGTCAACGCCACTCGCGCTCAGAACCACCAAGCGCCGGTGCCTATGAACAAGCCATGGGCTGCAATGTTCGCTTCTAAAACACTGGATGTGCAGAGGTCACAAATGTAACTTCAGTATTGTGTTGGGTAGAGGAAGTGTTTATAGAGCAAGGAGATGATTTACAAGAGATGTGTTGGGTTGGGTTTTGAGAGGAACAGTTTGTTGAATTTGTTCATTTTATTTGTGTAGGAAAATGGTTTTTACTTGTATGGTAAGAGACATAATTGTGTTTACTAAACTATTTTTATTATTATATTATATAGTATTAGT</gDNA_template>
            <first_frame> Y  *  K  N  *  S  H  F  S  L  I  K  Q  H  K  C  I  I  F  V  K  K  K  T  A  L  L  Y  S  W  Y  *  F  K  F  L  K  S  D  *  F  R  F  T  M  T  *  I  F  T  L  D  V  I  A  R  F  D  *  F  R  T  K  L  K  Q  T  E  V  D  C  E  Y  L  K  R  C  C  E  N  L  T  D  E  N  R  R  L  Q  K  E  V  S  E  L  R  A  L  K  L  S  P  Q  F  Y  M  N  M  S  P  P  T  T  L  T  M  C  P  Q  C  E  R  V  A  V  S  S  S  S  S  S  S  S  V  V  N  A  T  R  A  Q  N  H  Q  A  P  V  P  M  N  K  P  W  A  A  M  F  A  S  K  T  L  D  V  Q  R  S  Q  M  *  L  Q  Y  C  V  G  *  R  K  C  L  *  S  K  E  M  I  Y  K  R  C  V  G  L  G  F  E  R  N  S  L  L  N  L  F  I  L  F  V  *  E  N  G  F  Y  L  Y  G  K  R  H  N  C  V  Y  *  T  I  F  I  I  I  L  Y  S  I  S </first_frame>
            <second_frame>  T  R  K  I  N  P  I  F  L  *  S  N  N  I  N  V  S  Y  L  *  K  K  K  Q  L  Y  Y  I  L  G  I  N  L  S  F  *  S  L  T  N  S  D  L  R  *  L  E  Y  L  R  L  M  L  L  L  D  L  I  D  S  G  L  S  *  S  K  P  K  L  I  V  S  I  *  S  V  A  A  K  I  *  R  M  K  T  D  V  C  R  K  K  L  V  S  L  E  H  *  N  F  L  H  S  F  T  *  T  *  A  L  Q  Q  P  L  Q  C  A  L  N  A  S  A  *  L  Y  H  L  L  R  P  H  R  Q  *  S  T  P  L  A  L  R  T  T  K  R  R  C  L  *  T  S  H  G  L  Q  C  S  L  L  K  H  W  M  C  R  G  H  K  C  N  F  S  I  V  L  G  R  G  S  V  Y  R  A  R  R  *  F  T  R  D  V  L  G  W  V  L  R  G  T  V  C  *  I  C  S  F  Y  L  C  R  K  M  V  F  T  C  M  V  R  D  I  I  V  F  T  K  L  F  L  L  L  Y  Y  I  V  L   </second_frame>
            <third_frame>   L  E  K  L  I  P  F  F  F  D  Q  T  T  *  M  Y  H  I  C  K  K  K  N  S  F  T  I  F  L  V  L  I  *  V  F  E  V  *  L  I  Q  I  Y  D  D  L  N  I  Y  A  *  C  Y  C  S  I  *  L  I  Q  D  *  V  E  A  N  R  S  *  L  *  V  F  E  A  L  L  R  K  S  N  G  *  K  P  T  F  A  E  R  S  *  *  A  *  S  I  E  T  F  S  T  V  L  H  E  H  E  P  S  N  N  P  Y  N  V  P  S  M  R  A  R  S  C  I  I  F  F  V  L  I  V  S  S  Q  R  H  S  R  S  E  P  P  S  A  G  A  Y  E  Q  A  M  G  C  N  V  R  F  *  N  T  G  C  A  E  V  T  N  V  T  S  V  L  C  W  V  E  E  V  F  I  E  Q  G  D  D  L  Q  E  M  C  W  V  G  F  *  E  E  Q  F  V  E  F  V  H  F  I  C  V  G  K  W  F  L  L  V  W  *  E  T  *  L  C  L  L  N  Y  F  Y  Y  Y  I  I  *  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55609" stop="55941"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKLSPQFYMNMSPPTTLTMCPQCERVAVSSSSSSSSVVNATRAQNHQAPVPMNKPWAAMFASKTLDVQRSQM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="62659" PGL_stop="56994"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62659" e_stop="62327"/>
            <exon e_start="62200" e_stop="62128"/>
            <exon e_start="62007" e_stop="61907"/>
            <exon e_start="57495" e_stop="57170"/>
            <exon e_start="57003" e_stop="56994"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.892"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.917"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.892">
            <gDNA_exon_boundary e_start="62659" e_stop="62327" e_length="333"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62326" i_stop="62201" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62200" e_stop="62128" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62127" i_stop="62008" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62007" e_stop="61907" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="61906" i_stop="57496" i_length="4411"/>
          </intron>
          <exon e_serial="4" e_score="0.917">
            <gDNA_exon_boundary e_start="57495" e_stop="57170" e_length="326"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="57169" i_stop="57004" i_length="166"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="57003" e_stop="56994" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62659" stop="62327"/>
              <exon start="62200" stop="62128"/>
              <exon start="62007" stop="61907"/>
              <exon start="57495" stop="57192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62647" stop="62327"/>
              <exon start="62200" stop="62128"/>
              <exon start="62007" stop="61907"/>
              <exon start="57495" stop="57348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62636" stop="62327"/>
              <exon start="62200" stop="62128"/>
              <exon start="62007" stop="61907"/>
              <exon start="57495" stop="57206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62526" stop="62327"/>
              <exon start="62200" stop="62128"/>
              <exon start="62007" stop="61907"/>
              <exon start="57495" stop="57175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62521" stop="62327"/>
              <exon start="62200" stop="62128"/>
              <exon start="62007" stop="61907"/>
              <exon start="57495" stop="57170"/>
              <exon start="57003" stop="56994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62496" stop="62327"/>
              <exon start="62200" stop="62128"/>
              <exon start="62007" stop="61907"/>
              <exon start="57495" stop="57348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62492" stop="62327"/>
              <exon start="62200" stop="62128"/>
              <exon start="62007" stop="61907"/>
              <exon start="57495" stop="57366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGGTTGTATTTGTAAGTTTAAGAAACTAAGAGGAATGTAACTGCAATTTACTCATTTTATATACCAAGTATCAAAATGTTGTAAAAAAACAAACAAACAAAAAAGAATCAAGATTCTCACTCCTGTTGGTAAAATCATCGAGGACCAAAATTTGAAGCATCCAAAAAACACTCTCAATAAAAATCCCCTAAAGCTGATTGCTTGTGCAATTGAGGAGGCTCAAGGTTTTGGAGCTGTCTACAAATGGCTGAGATTGTCGAAGCAGATAATTACGAAGGCATAATCACAAGAATCGAGCACAAGTCCCGCAAGATCGAAAGTTTACTCAAACA : GTATAAACCAGTGGAAGCTCTGAAAACAGCTCTAGAAGGATCACCTCCTAAGACCAAGGATGAAAGATGCAAG : TCTGCTAATTGGATAGTGGTGCATAGGGCTATAATGGCTATCAAGGATGTGGATAGCTTGTTCTCTGCATTGGATCCTGAGTATTATGATATTCTCATGAA : GTACTTGTACAGAGGTTTGTCTACTGGAGACCGCCCAACATGTGACCAATGTCTAAGGATCCATGAAAAACTAACAGAAAAAGCTGGTTTGGGATGCATACTGCGTTGTCTTGCTGACACTGTGAATACTGTGTGACTAATACGCTGGGTACTGTAGCAATTTGTATATGTCTTATCTTTGCTTTCTGATTGAATATTGATGTTGAGATTGAGTTTAGCCTATTTTCAAAGGGCTGATTCCTCTCCTTTAGTCGTATGTATTCTTCGCGACATATAACATATGAACTGTACCAAGGCAATTTGAGATTTCTCCCATCCTTTAGTGC : AAAAAAAAAA</gDNA_template>
            <first_frame> G  V  V  F  V  S  L  R  N  *  E  E  C  N  C  N  L  L  I  L  Y  T  K  Y  Q  N  V  V  K  K  Q  T  N  K  K  E  S  R  F  S  L  L  L  V  K  S  S  R  T  K  I  *  S  I  Q  K  T  L  S  I  K  I  P  *  S  *  L  L  V  Q  L  R  R  L  K  V  L  E  L  S  T  N  G  *  D  C  R  S  R  *  L  R  R  H  N  H  K  N  R  A  Q  V  P  Q  D  R  K  F  T  Q  T  :  V  *  T  S  G  S  S  E  N  S  S  R  R  I  T  S  *  D  Q  G  *  K  M  Q   : V  C  *  L  D  S  G  A  *  G  Y  N  G  Y  Q  G  C  G  *  L  V  L  C  I  G  S  *  V  L  *  Y  S  H  E  :  V  L  V  Q  R  F  V  Y  W  R  P  P  N  M  *  P  M  S  K  D  P  *  K  T  N  R  K  S  W  F  G  M  H  T  A  L  S  C  *  H  C  E  Y  C  V  T  N  T  L  G  T  V  A  I  C  I  C  L  I  F  A  F  *  L  N  I  D  V  E  I  E  F  S  L  F  S  K  G  *  F  L  S  F  S  R  M  Y  S  S  R  H  I  T  Y  E  L  Y  Q  G  N  L  R  F  L  P  S  F  S  A :   K  K  K </first_frame>
            <second_frame>  G  L  Y  L  *  V  *  E  T  K  R  N  V  T  A  I  Y  S  F  Y  I  P  S  I  K  M  L  *  K  N  K  Q  T  K  K  N  Q  D  S  H  S  C  W  *  N  H  R  G  P  K  F  E  A  S  K  K  H  S  Q  *  K  S  P  K  A  D  C  L  C  N  *  G  G  S  R  F  W  S  C  L  Q  M  A  E  I  V  E  A  D  N  Y  E  G  I  I  T  R  I  E  H  K  S  R  K  I  E  S  L  L  K  Q :   Y  K  P  V  E  A  L  K  T  A  L  E  G  S  P  P  K  T  K  D  E  R  C  K  :  S  A  N  W  I  V  V  H  R  A  I  M  A  I  K  D  V  D  S  L  F  S  A  L  D  P  E  Y  Y  D  I  L  M  K :   Y  L  Y  R  G  L  S  T  G  D  R  P  T  C  D  Q  C  L  R  I  H  E  K  L  T  E  K  A  G  L  G  C  I  L  R  C  L  A  D  T  V  N  T  V  *  L  I  R  W  V  L  *  Q  F  V  Y  V  L  S  L  L  S  D  *  I  L  M  L  R  L  S  L  A  Y  F  Q  R  A  D  S  S  P  L  V  V  C  I  L  R  D  I  *  H  M  N  C  T  K  A  I  *  D  F  S  H  P  L  V   : Q  K  K   </second_frame>
            <third_frame>   G  C  I  C  K  F  K  K  L  R  G  M  *  L  Q  F  T  H  F  I  Y  Q  V  S  K  C  C  K  K  T  N  K  Q  K  R  I  K  I  L  T  P  V  G  K  I  I  E  D  Q  N  L  K  H  P  K  N  T  L  N  K  N  P  L  K  L  I  A  C  A  I  E  E  A  Q  G  F  G  A  V  Y  K  W  L  R  L  S  K  Q  I  I  T  K  A  *  S  Q  E  S  S  T  S  P  A  R  S  K  V  Y  S  N   : S  I  N  Q  W  K  L  *  K  Q  L  *  K  D  H  L  L  R  P  R  M  K  D  A  S :   L  L  I  G  *  W  C  I  G  L  *  W  L  S  R  M  W  I  A  C  S  L  H  W  I  L  S  I  M  I  F  S  *   : S  T  C  T  E  V  C  L  L  E  T  A  Q  H  V  T  N  V  *  G  S  M  K  N  *  Q  K  K  L  V  W  D  A  Y  C  V  V  L  L  T  L  *  I  L  C  D  *  Y  A  G  Y  C  S  N  L  Y  M  S  Y  L  C  F  L  I  E  Y  *  C  *  D  *  V  *  P  I  F  K  G  L  I  P  L  L  *  S  Y  V  F  F  A  T  Y  N  I  *  T  V  P  R  Q  F  E  I  S  P  I  L  *  C  :  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62445" stop="62327"/>
                    <exon start="62200" stop="62128"/>
                    <exon start="62007" stop="61907"/>
                    <exon start="57495" stop="57360"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGSRFWSCLQMAEIVEADNYEGIITRIEHKSRKIESLLKQYKPVEALKTALEGSPPKTKDERCKSANWIVVHRAIMAIKDVDSLFSALDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILRCLADTVNTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="64276" PGL_stop="65101"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64276" e_stop="65101"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64276" e_stop="65101" e_length="826"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64276" stop="65101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740167" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCAATCTTTGATGATGGGCTTGAGAATTATTGTGGGTCTGATGAGAAAAGAATGATCCCAAATTGGGATTCTCAATTCTTGAATCATGAAGGTAGGGAACAGGAAAGGTTTGAGCTTGTTGAGGGTCAAAGAAGCAGATCTTTTTCAGGTGAAAATGGGGCTGAAATTTTATGTGGGTCTGATGACAAAAGAGTGATCCCAAATTGGGATTCTCAGTTTTTGCATTATGAGTACGGGGGTCAAGAAAGGTCTAATCTTGATGAAGTTGAGAAAAGTAGAACCTTTACGGAGATAGGTGGGGTCGAAAATACAGAGGTGTTTAATGAGAGGGAAGTAGCTCAAGTTTGGAATTCACAGTACTTTCTAGGTGAATCCATGGTGGTTGTTGCCAATGGGAACTATGGGGTTGAAAAGGTATCCCACATTGACCATAAACCTTTAGGCTTGCCCATTAGGAGCCTGAGATACAGAGTTAATGCTGAAAACTCTGAATCTATTGTTGAAGATACTGTGAATTCAGGGAGTTCGTCTGGTTGTAATGGTTATGAAGTTAGTGAGGAGAACATAAGAGGTATGGCTTCAGTCAATTTGAGGAGCAAGTTTGAGGAAGCTTCTGGACCTCGCCAAGTTTCATGGCGCTCGAGGTCTCAGAGGAGGGAGCTAGAAGAAGTGAATACAGTTAGACCGCATTCACATTCTAGACCTCACTCGGTTGGACAATTGGAGTTTGGGTATCTCAAGTCTAGGTCATTCAATAAACCGGTATCCTCTCGGACTAGTCCTACTTCTTGTTCACCAAGTATTACCTCACCTTCATCCTCTT</gDNA_template>
            <first_frame> V  S  I  F  D  D  G  L  E  N  Y  C  G  S  D  E  K  R  M  I  P  N  W  D  S  Q  F  L  N  H  E  G  R  E  Q  E  R  F  E  L  V  E  G  Q  R  S  R  S  F  S  G  E  N  G  A  E  I  L  C  G  S  D  D  K  R  V  I  P  N  W  D  S  Q  F  L  H  Y  E  Y  G  G  Q  E  R  S  N  L  D  E  V  E  K  S  R  T  F  T  E  I  G  G  V  E  N  T  E  V  F  N  E  R  E  V  A  Q  V  W  N  S  Q  Y  F  L  G  E  S  M  V  V  V  A  N  G  N  Y  G  V  E  K  V  S  H  I  D  H  K  P  L  G  L  P  I  R  S  L  R  Y  R  V  N  A  E  N  S  E  S  I  V  E  D  T  V  N  S  G  S  S  S  G  C  N  G  Y  E  V  S  E  E  N  I  R  G  M  A  S  V  N  L  R  S  K  F  E  E  A  S  G  P  R  Q  V  S  W  R  S  R  S  Q  R  R  E  L  E  E  V  N  T  V  R  P  H  S  H  S  R  P  H  S  V  G  Q  L  E  F  G  Y  L  K  S  R  S  F  N  K  P  V  S  S  R  T  S  P  T  S  C  S  P  S  I  T  S  P  S  S  S  </first_frame>
            <second_frame>  F  Q  S  L  M  M  G  L  R  I  I  V  G  L  M  R  K  E  *  S  Q  I  G  I  L  N  S  *  I  M  K  V  G  N  R  K  G  L  S  L  L  R  V  K  E  A  D  L  F  Q  V  K  M  G  L  K  F  Y  V  G  L  M  T  K  E  *  S  Q  I  G  I  L  S  F  C  I  M  S  T  G  V  K  K  G  L  I  L  M  K  L  R  K  V  E  P  L  R  R  *  V  G  S  K  I  Q  R  C  L  M  R  G  K  *  L  K  F  G  I  H  S  T  F  *  V  N  P  W  W  L  L  P  M  G  T  M  G  L  K  R  Y  P  T  L  T  I  N  L  *  A  C  P  L  G  A  *  D  T  E  L  M  L  K  T  L  N  L  L  L  K  I  L  *  I  Q  G  V  R  L  V  V  M  V  M  K  L  V  R  R  T  *  E  V  W  L  Q  S  I  *  G  A  S  L  R  K  L  L  D  L  A  K  F  H  G  A  R  G  L  R  G  G  S  *  K  K  *  I  Q  L  D  R  I  H  I  L  D  L  T  R  L  D  N  W  S  L  G  I  S  S  L  G  H  S  I  N  R  Y  P  L  G  L  V  L  L  L  V  H  Q  V  L  P  H  L  H  P  L </second_frame>
            <third_frame>   F  N  L  *  *  W  A  *  E  L  L  W  V  *  *  E  K  N  D  P  K  L  G  F  S  I  L  E  S  *  R  *  G  T  G  K  V  *  A  C  *  G  S  K  K  Q  I  F  F  R  *  K  W  G  *  N  F  M  W  V  *  *  Q  K  S  D  P  K  L  G  F  S  V  F  A  L  *  V  R  G  S  R  K  V  *  S  *  *  S  *  E  K  *  N  L  Y  G  D  R  W  G  R  K  Y  R  G  V  *  *  E  G  S  S  S  S  L  E  F  T  V  L  S  R  *  I  H  G  G  C  C  Q  W  E  L  W  G  *  K  G  I  P  H  *  P  *  T  F  R  L  A  H  *  E  P  E  I  Q  S  *  C  *  K  L  *  I  Y  C  *  R  Y  C  E  F  R  E  F  V  W  L  *  W  L  *  S  *  *  G  E  H  K  R  Y  G  F  S  Q  F  E  E  Q  V  *  G  S  F  W  T  S  P  S  F  M  A  L  E  V  S  E  E  G  A  R  R  S  E  Y  S  *  T  A  F  T  F  *  T  S  L  G  W  T  I  G  V  W  V  S  Q  V  *  V  I  Q  *  T  G  I  L  S  D  *  S  Y  F  L  F  T  K  Y  Y  L  T  F  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64276" stop="65100"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSIFDDGLENYCGSDEKRMIPNWDSQFLNHEGREQERFELVEGQRSRSFSGENGAEILCGSDDKRVIPNWDSQFLHYEYGGQERSNLDEVEKSRTFTEIGGVENTEVFNEREVAQVWNSQYFLGESMVVVANGNYGVEKVSHIDHKPLGLPIRSLRYRVNAENSESIVEDTVNSGSSSGCNGYEVSEENIRGMASVNLRSKFEEASGPRQVSWRSRSQRRELEEVNTVRPHSHSRPHSVGQLEFGYLKSRSFNKPVSSRTSPTSCSPSITSPSSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="65746" PGL_stop="65016"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65746" e_stop="65016"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="65746" e_stop="65016" e_length="731"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65746" stop="65016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322842" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATGCTCGAGACTTTGAGATATGATGTGTTGCTTCACCATTCACAGGTGCAACATCCTTCAATTTTTCTTTAGATGTCCGAAGTGTATCGAACTCTGAGGAAGAACCAACACTAGATCGTTGAGCCTTTGAAGCAACAAATGCAGCTGCATCATCTATTGATCTCGCTGTTGGTTGACTCACTTGGATGGGTGGAGGCTTGACATTCTTGAGTCTCTCATGGTCTTGCTTTCTGGAGTTTGGCATCTCTGGAGAGGAAGAGGATATTGGTGAGATTGTTCTGGGAGAAGAAGAATTGGGAATAATTTGAGCGCGTACACGAGTCCAGAATGACCATGGCTCTTGATGCTCGGACTCAGTTTCTCCAGCAGAGTGGGACTTAGAATGTGGATGACCTTGAACATGACATGTTTCTGTGCTGGAAGGATACATTTTCATCTTTTTTTCATCCTCTTCATAGTCATCTCTCAGCAGCACATTCATTTCTGAACATGACTCATTGCTAGATTGTTTGACATTTGAAGTTAAAACTGCTGATTCTCCAACGGATGCTCCTGTCTGTTGTGAAGTTGAGATGGGCATACTCTCAAATGCATAATGTGGCTCAGTGTGTGGCAATTTTCCACTTTCATTTTCTGAAGAATAAGAGGATGAAGGTGAGGTAATACTTGGTGAACAAGAAGTAGGACTAGTCCGAGAGGATACCGGTTTATTGAATGACCTAGACTTG</gDNA_template>
            <first_frame> *  M  L  E  T  L  R  Y  D  V  L  L  H  H  S  Q  V  Q  H  P  S  I  F  L  *  M  S  E  V  Y  R  T  L  R  K  N  Q  H  *  I  V  E  P  L  K  Q  Q  M  Q  L  H  H  L  L  I  S  L  L  V  D  S  L  G  W  V  E  A  *  H  S  *  V  S  H  G  L  A  F  W  S  L  A  S  L  E  R  K  R  I  L  V  R  L  F  W  E  K  K  N  W  E  *  F  E  R  V  H  E  S  R  M  T  M  A  L  D  A  R  T  Q  F  L  Q  Q  S  G  T  *  N  V  D  D  L  E  H  D  M  F  L  C  W  K  D  T  F  S  S  F  F  H  P  L  H  S  H  L  S  A  A  H  S  F  L  N  M  T  H  C  *  I  V  *  H  L  K  L  K  L  L  I  L  Q  R  M  L  L  S  V  V  K  L  R  W  A  Y  S  Q  M  H  N  V  A  Q  C  V  A  I  F  H  F  H  F  L  K  N  K  R  M  K  V  R  *  Y  L  V  N  K  K  *  D  *  S  E  R  I  P  V  Y  *  M  T  *  T   </first_frame>
            <second_frame>  K  C  S  R  L  *  D  M  M  C  C  F  T  I  H  R  C  N  I  L  Q  F  F  F  R  C  P  K  C  I  E  L  *  G  R  T  N  T  R  S  L  S  L  *  S  N  K  C  S  C  I  I  Y  *  S  R  C  W  L  T  H  L  D  G  W  R  L  D  I  L  E  S  L  M  V  L  L  S  G  V  W  H  L  W  R  G  R  G  Y  W  *  D  C  S  G  R  R  R  I  G  N  N  L  S  A  Y  T  S  P  E  *  P  W  L  L  M  L  G  L  S  F  S  S  R  V  G  L  R  M  W  M  T  L  N  M  T  C  F  C  A  G  R  I  H  F  H  L  F  F  I  L  F  I  V  I  S  Q  Q  H  I  H  F  *  T  *  L  I  A  R  L  F  D  I  *  S  *  N  C  *  F  S  N  G  C  S  C  L  L  *  S  *  D  G  H  T  L  K  C  I  M  W  L  S  V  W  Q  F  S  T  F  I  F  *  R  I  R  G  *  R  *  G  N  T  W  *  T  R  S  R  T  S  P  R  G  Y  R  F  I  E  *  P  R  L  </second_frame>
            <third_frame>   N  A  R  D  F  E  I  *  C  V  A  S  P  F  T  G  A  T  S  F  N  F  S  L  D  V  R  S  V  S  N  S  E  E  E  P  T  L  D  R  *  A  F  E  A  T  N  A  A  A  S  S  I  D  L  A  V  G  *  L  T  W  M  G  G  G  L  T  F  L  S  L  S  W  S  C  F  L  E  F  G  I  S  G  E  E  E  D  I  G  E  I  V  L  G  E  E  E  L  G  I  I  *  A  R  T  R  V  Q  N  D  H  G  S  *  C  S  D  S  V  S  P  A  E  W  D  L  E  C  G  *  P  *  T  *  H  V  S  V  L  E  G  Y  I  F  I  F  F  S  S  S  S  *  S  S  L  S  S  T  F  I  S  E  H  D  S  L  L  D  C  L  T  F  E  V  K  T  A  D  S  P  T  D  A  P  V  C  C  E  V  E  M  G  I  L  S  N  A  *  C  G  S  V  C  G  N  F  P  L  S  F  S  E  E  *  E  D  E  G  E  V  I  L  G  E  Q  E  V  G  L  V  R  E  D  T  G  L  L  N  D  L  D  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0329A12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="65517" PGL_stop="66206"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65517" e_stop="66206"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="65517" e_stop="66206" e_length="690"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65517" stop="66206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65517" stop="66187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGACCATGAGAGACTCAAGAATGTCAAGCCTCCACCCATCCAAGTGAGTCAACCAACAGCGAGATCAATAGATGATGCAGCTGCATTTGTTGCTTCAAAGGCTCAACGATCTAGTGTTGGTTCTTCCTCAGAGTTCGATACACTTCGGACATCTAAAGAAAAATTGAAGGATGTTGCACCTGTGAATGGTGAAGCAACACATCATATCTCAAAGTCTCGAGCATTTAGCATTGGTTCTTCTTCAGAAATAACCATGCAAGAAAGTTCAAAAGATAAATTGGAGCATGTCAATAAGGATCTTAAACAGGATTCTTCGTACACACGAAAACAAAGTGTCAACTCCTTAGTCTCGGACATGAAACAGCAGTCACCTGTGAATAATTCATCAAGGGGAAAATCAGTCAGAACATTTAGATCCCGAAGAAGTTACATTGATAGATCAAAAAGAAAGGTTGATTGTCCAAAAGAAGGTGGAGATGTAAACGAGATACGTTGTAATCAATTTGACACAACATCATCCTTTAAATGCATTAATCGAAAAGGGGATTCAAAACCACCAGTCAATTCTAGAGAAGGCATTATTGACAACAGTGGGCCAATTCCAAGCTCAGCATTCTTTGAAAGTGAGCCTGAAGCAAAGCAACATTTTACGAATACAGACATTATGGAGGCCAAGGGGAACTCAGA</gDNA_template>
            <first_frame> A  R  P  *  E  T  Q  E  C  Q  A  S  T  H  P  S  E  S  T  N  S  E  I  N  R  *  C  S  C  I  C  C  F  K  G  S  T  I  *  C  W  F  F  L  R  V  R  Y  T  S  D  I  *  R  K  I  E  G  C  C  T  C  E  W  *  S  N  T  S  Y  L  K  V  S  S  I  *  H  W  F  F  F  R  N  N  H  A  R  K  F  K  R  *  I  G  A  C  Q  *  G  S  *  T  G  F  F  V  H  T  K  T  K  C  Q  L  L  S  L  G  H  E  T  A  V  T  C  E  *  F  I  K  G  K  I  S  Q  N  I  *  I  P  K  K  L  H  *  *  I  K  K  K  G  *  L  S  K  R  R  W  R  C  K  R  D  T  L  *  S  I  *  H  N  I  I  L  *  M  H  *  S  K  R  G  F  K  T  T  S  Q  F  *  R  R  H  Y  *  Q  Q  W  A  N  S  K  L  S  I  L  *  K  *  A  *  S  K  A  T  F  Y  E  Y  R  H  Y  G  G  Q  G  E  L  R </first_frame>
            <second_frame>  Q  D  H  E  R  L  K  N  V  K  P  P  P  I  Q  V  S  Q  P  T  A  R  S  I  D  D  A  A  A  F  V  A  S  K  A  Q  R  S  S  V  G  S  S  S  E  F  D  T  L  R  T  S  K  E  K  L  K  D  V  A  P  V  N  G  E  A  T  H  H  I  S  K  S  R  A  F  S  I  G  S  S  S  E  I  T  M  Q  E  S  S  K  D  K  L  E  H  V  N  K  D  L  K  Q  D  S  S  Y  T  R  K  Q  S  V  N  S  L  V  S  D  M  K  Q  Q  S  P  V  N  N  S  S  R  G  K  S  V  R  T  F  R  S  R  R  S  Y  I  D  R  S  K  R  K  V  D  C  P  K  E  G  G  D  V  N  E  I  R  C  N  Q  F  D  T  T  S  S  F  K  C  I  N  R  K  G  D  S  K  P  P  V  N  S  R  E  G  I  I  D  N  S  G  P  I  P  S  S  A  F  F  E  S  E  P  E  A  K  Q  H  F  T  N  T  D  I  M  E  A  K  G  N  S   </second_frame>
            <third_frame>   K  T  M  R  D  S  R  M  S  S  L  H  P  S  K  *  V  N  Q  Q  R  D  Q  *  M  M  Q  L  H  L  L  L  Q  R  L  N  D  L  V  L  V  L  P  Q  S  S  I  H  F  G  H  L  K  K  N  *  R  M  L  H  L  *  M  V  K  Q  H  I  I  S  Q  S  L  E  H  L  A  L  V  L  L  Q  K  *  P  C  K  K  V  Q  K  I  N  W  S  M  S  I  R  I  L  N  R  I  L  R  T  H  E  N  K  V  S  T  P  *  S  R  T  *  N  S  S  H  L  *  I  I  H  Q  G  E  N  Q  S  E  H  L  D  P  E  E  V  T  L  I  D  Q  K  E  R  L  I  V  Q  K  K  V  E  M  *  T  R  Y  V  V  I  N  L  T  Q  H  H  P  L  N  A  L  I  E  K  G  I  Q  N  H  Q  S  I  L  E  K  A  L  L  T  T  V  G  Q  F  Q  A  Q  H  S  L  K  V  S  L  K  Q  S  N  I  L  R  I  Q  T  L  W  R  P  R  G  T  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65518" stop="66204"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QDHERLKNVKPPPIQVSQPTARSIDDAAAFVASKAQRSSVGSSSEFDTLRTSKEKLKDVAPVNGEATHHISKSRAFSIGSSSEITMQESSKDKLEHVNKDLKQDSSYTRKQSVNSLVSDMKQQSPVNNSSRGKSVRTFRSRRSYIDRSKRKVDCPKEGGDVNEIRCNQFDTTSSFKCINRKGDSKPPVNSREGIIDNSGPIPSSAFFESEPEAKQHFTNTDIMEAKGNS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="66247" PGL_stop="66714"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66247" e_stop="66714"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="66247" e_stop="66714" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66247" stop="66714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712296" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGACTTTGACCTTGCTGATGATGTGGATCTGGGAAGTGAGGTTGATAGAAAAGCTGGTGAATTCATTGCCAAGTTCAGAGAACAGATTAGGCTTCAGAAAATTGAATCATTTCGACGGACCAGTGCTTAGTTGCTACCACTCTATCTTGAGGGTATATAGTGATTCTAGTATGCTAAAGAAGGATGTCTTCCCTTGTTTAGTGGAAACTGTGAAAATTGATCATTTGTTTATATGTTAGCCTTTCTTTGTGTAAACAAACACTTCGAGTGTTCTTAGAAAAAACCTGCTCAGGTGTGTAGGAGGGACAATTTCTTGCATCCTTCCCTTCTTGGAAGAGAAATCAGCAGTCTATTGGAAAACTATCTTTAGATGTTTCCATCATTTTAACTTTCATTTTACACAGAATTCATGTAACCTTGCAATTCATAATTCAAGATTGTGTTCAATTTTTATTTTCATCTAGAT</gDNA_template>
            <first_frame> A  D  F  D  L  A  D  D  V  D  L  G  S  E  V  D  R  K  A  G  E  F  I  A  K  F  R  E  Q  I  R  L  Q  K  I  E  S  F  R  R  T  S  A  *  L  L  P  L  Y  L  E  G  I  *  *  F  *  Y  A  K  E  G  C  L  P  L  F  S  G  N  C  E  N  *  S  F  V  Y  M  L  A  F  L  C  V  N  K  H  F  E  C  S  *  K  K  P  A  Q  V  C  R  R  D  N  F  L  H  P  S  L  L  G  R  E  I  S  S  L  L  E  N  Y  L  *  M  F  P  S  F  *  L  S  F  Y  T  E  F  M  *  P  C  N  S  *  F  K  I  V  F  N  F  Y  F  H  L  D </first_frame>
            <second_frame>  L  T  L  T  L  L  M  M  W  I  W  E  V  R  L  I  E  K  L  V  N  S  L  P  S  S  E  N  R  L  G  F  R  K  L  N  H  F  D  G  P  V  L  S  C  Y  H  S  I  L  R  V  Y  S  D  S  S  M  L  K  K  D  V  F  P  C  L  V  E  T  V  K  I  D  H  L  F  I  C  *  P  F  F  V  *  T  N  T  S  S  V  L  R  K  N  L  L  R  C  V  G  G  T  I  S  C  I  L  P  F  L  E  E  K  S  A  V  Y  W  K  T  I  F  R  C  F  H  H  F  N  F  H  F  T  Q  N  S  C  N  L  A  I  H  N  S  R  L  C  S  I  F  I  F  I  *   </second_frame>
            <third_frame>   *  L  *  P  C  *  *  C  G  S  G  K  *  G  *  *  K  S  W  *  I  H  C  Q  V  Q  R  T  D  *  A  S  E  N  *  I  I  S  T  D  Q  C  L  V  A  T  T  L  S  *  G  Y  I  V  I  L  V  C  *  R  R  M  S  S  L  V  *  W  K  L  *  K  L  I  I  C  L  Y  V  S  L  S  L  C  K  Q  T  L  R  V  F  L  E  K  T  C  S  G  V  *  E  G  Q  F  L  A  S  F  P  S  W  K  R  N  Q  Q  S  I  G  K  L  S  L  D  V  S  I  I  L  T  F  I  L  H  R  I  H  V  T  L  Q  F  I  I  Q  D  C  V  Q  F  L  F  S  S  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66248" stop="66487"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTLTLLMMWIWEVRLIEKLVNSLPSSENRLGFRKLNHFDGPVLSCYHSILRVYSDSSMLKKDVFPCLVETVKIDHLFIC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66503" stop="66712"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNTSSVLRKNLLRCVGGTISCILPFLEEKSAVYWKTIFRCFHHFNFHFTQNSCNLAIHNSRLCSIFIFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="68408" PGL_stop="66533"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68408" e_stop="68173"/>
            <exon e_start="67767" e_stop="67394"/>
            <exon e_start="67200" e_stop="67151"/>
            <exon e_start="66576" e_stop="66533"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.580"/>
          <exon-only e_score="0.477"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68408" e_stop="68173" e_length="236"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.969">
            <gDNA_intron_boundary i_start="68172" i_stop="67768" i_length="405"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67767" e_stop="67394" e_length="374"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67393" i_stop="67201" i_length="193"/>
          </intron>
          <exon e_serial="3" e_score="0.580">
            <gDNA_exon_boundary e_start="67200" e_stop="67151" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67150" i_stop="66577" i_length="574"/>
          </intron>
          <exon e_serial="4" e_score="0.477">
            <gDNA_exon_boundary e_start="66576" e_stop="66533" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68408" stop="68173"/>
              <exon start="67767" stop="67394"/>
              <exon start="67200" stop="67151"/>
              <exon start="66576" stop="66533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552252" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCCCGAGACTTAAACATCTTCACATATCATGTGATAAACTTGAGAAGATCCCCATTGGCCTGGCTGATATATGCAGCCTCCAAGTGATGGATTTGCGAAATTCCACTAAATCAGCAGCAAAATCTGCCAGAGAGATACAAGCCAAAAAAAACAAGCTGCAACCTGCTAAATCCCAGAAGTTCGAGCTTTCTGTATTCCCTCCTGATTCTGATGTACAGACAGCTTCTTAGAAAG : GTCTAAAATAACCACATGCTGCAGGTTCAACCAGCCTGGTTGGCGCGCATGGTTTTTGCTTCATTTGGATCACTGCTTTCACAGTGAAACCTATTGCATTTCATAAGTGGAACGACTGATCCACGGTTTTGCAACTCTTTGGTTTCTTACTGTATTTGATGTGAGTTCATGTTTTATTGATTGTGGATGCAATGTGTCATCATAGCCAAGGAATAAGAACCAAATGTAACGTTCAAGAAATATCAGACATTGTTTCTTATAAGTTATACCACTCTGAATTTTCTCCTTTTAGATACAACAGCAGAACAAGTCACTTGTTCTGATTCATACACAATTTGATCATGTGTTATTATTTAAACAGCACTTCTGGTTTT : AATACCAAAAAAAAATTTAAAAAAATGACTAGTTACATTATTTACAAGAA : AAGGGAAGGATGCAAGAAATTGTCCCTCCTACACACCTGAGCAG</gDNA_template>
            <first_frame> L  P  E  T  *  T  S  S  H  I  M  *  *  T  *  E  D  P  H  W  P  G  *  Y  M  Q  P  P  S  D  G  F  A  K  F  H  *  I  S  S  K  I  C  Q  R  D  T  S  Q  K  K  Q  A  A  T  C  *  I  P  E  V  R  A  F  C  I  P  S  *  F  *  C  T  D  S  F  L  E  R :   S  K  I  T  T  C  C  R  F  N  Q  P  G  W  R  A  W  F  L  L  H  L  D  H  C  F  H  S  E  T  Y  C  I  S  *  V  E  R  L  I  H  G  F  A  T  L  W  F  L  T  V  F  D  V  S  S  C  F  I  D  C  G  C  N  V  S  S  *  P  R  N  K  N  Q  M  *  R  S  R  N  I  R  H  C  F  L  *  V  I  P  L  *  I  F  S  F  *  I  Q  Q  Q  N  K  S  L  V  L  I  H  T  Q  F  D  H  V  L  L  F  K  Q  H  F  W  F   : *  Y  Q  K  K  I  *  K  N  D  *  L  H  Y  L  Q  E  :  K  G  R  M  Q  E  I  V  P  P  T  H  L  S   </first_frame>
            <second_frame>  F  P  R  L  K  H  L  H  I  S  C  D  K  L  E  K  I  P  I  G  L  A  D  I  C  S  L  Q  V  M  D  L  R  N  S  T  K  S  A  A  K  S  A  R  E  I  Q  A  K  K  N  K  L  Q  P  A  K  S  Q  K  F  E  L  S  V  F  P  P  D  S  D  V  Q  T  A  S  *  K   : G  L  K  *  P  H  A  A  G  S  T  S  L  V  G  A  H  G  F  C  F  I  W  I  T  A  F  T  V  K  P  I  A  F  H  K  W  N  D  *  S  T  V  L  Q  L  F  G  F  L  L  Y  L  M  *  V  H  V  L  L  I  V  D  A  M  C  H  H  S  Q  G  I  R  T  K  C  N  V  Q  E  I  S  D  I  V  S  Y  K  L  Y  H  S  E  F  S  P  F  R  Y  N  S  R  T  S  H  L  F  *  F  I  H  N  L  I  M  C  Y  Y  L  N  S  T  S  G  F  :  N  T  K  K  K  F  K  K  M  T  S  Y  I  I  Y  K  K :   R  E  G  C  K  K  L  S  L  L  H  T  *  A  </second_frame>
            <third_frame>   S  R  D  L  N  I  F  T  Y  H  V  I  N  L  R  R  S  P  L  A  W  L  I  Y  A  A  S  K  *  W  I  C  E  I  P  L  N  Q  Q  Q  N  L  P  E  R  Y  K  P  K  K  T  S  C  N  L  L  N  P  R  S  S  S  F  L  Y  S  L  L  I  L  M  Y  R  Q  L  L  R  K  :  V  *  N  N  H  M  L  Q  V  Q  P  A  W  L  A  R  M  V  F  A  S  F  G  S  L  L  S  Q  *  N  L  L  H  F  I  S  G  T  T  D  P  R  F  C  N  S  L  V  S  Y  C  I  *  C  E  F  M  F  Y  *  L  W  M  Q  C  V  I  I  A  K  E  *  E  P  N  V  T  F  K  K  Y  Q  T  L  F  L  I  S  Y  T  T  L  N  F  L  L  L  D  T  T  A  E  Q  V  T  C  S  D  S  Y  T  I  *  S  C  V  I  I  *  T  A  L  L  V  L :   I  P  K  K  N  L  K  K  *  L  V  T  L  F  T  R   : K  G  K  D  A  R  N  C  P  S  Y  T  P  E  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68407" stop="68177"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPRLKHLHISCDKLEKIPIGLADICSLQVMDLRNSTKSAAKSAREIQAKKNKLQPAKSQKFELSVFPPDSDVQTAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="69652" PGL_stop="69129"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69652" e_stop="69129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="69652" e_stop="69129" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69652" stop="69129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212407" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGAGTTATGATGTTTTGCCTTATGACTGGAAAGCTTGCTTTTTATACTTCGGTACATTCCCCAGAGGCTATTTAATCCCTGCCAGGAAATTGATCCGCTTATGGATCGCGGAAGGGTTTATCCAGTACAGAGGGGACTTATCCCCTGAGTGTAAAGCAGAGGAGTACTTGAATGAACTCGTAAATAGAAACTTAGTGATGGTAATGCAAAGGACGGTTGATGGACAAATCAAAACTTGTCGTGTTCATGACATGTTGTATGAGTTTTGCTGGCAAGAGGCTACGACAGAGGAAAATCTTTTCCATGAAGTAAAATTCGGTGGTGAGCAATCTGTTCGTGAAGTATCCACTCATCGTCGCTTGTGCATTCATTCCTCTGTTGTGGAGTTCATTTCTAAGAAGCCCTCTGGTGAGCATGTTAGGTCGTTCCTATGTTTTTCTCCAGAAAAAATTGACACTCCCCCAACTGTCAGTGCAAACATATCAAAAGCCTTTCCATTGCTAAGGGTGTTTGATACTGAATC</gDNA_template>
            <first_frame> M  S  Y  D  V  L  P  Y  D  W  K  A  C  F  L  Y  F  G  T  F  P  R  G  Y  L  I  P  A  R  K  L  I  R  L  W  I  A  E  G  F  I  Q  Y  R  G  D  L  S  P  E  C  K  A  E  E  Y  L  N  E  L  V  N  R  N  L  V  M  V  M  Q  R  T  V  D  G  Q  I  K  T  C  R  V  H  D  M  L  Y  E  F  C  W  Q  E  A  T  T  E  E  N  L  F  H  E  V  K  F  G  G  E  Q  S  V  R  E  V  S  T  H  R  R  L  C  I  H  S  S  V  V  E  F  I  S  K  K  P  S  G  E  H  V  R  S  F  L  C  F  S  P  E  K  I  D  T  P  P  T  V  S  A  N  I  S  K  A  F  P  L  L  R  V  F  D  T  E   </first_frame>
            <second_frame>  *  V  M  M  F  C  L  M  T  G  K  L  A  F  Y  T  S  V  H  S  P  E  A  I  *  S  L  P  G  N  *  S  A  Y  G  S  R  K  G  L  S  S  T  E  G  T  Y  P  L  S  V  K  Q  R  S  T  *  M  N  S  *  I  E  T  *  *  W  *  C  K  G  R  L  M  D  K  S  K  L  V  V  F  M  T  C  C  M  S  F  A  G  K  R  L  R  Q  R  K  I  F  S  M  K  *  N  S  V  V  S  N  L  F  V  K  Y  P  L  I  V  A  C  A  F  I  P  L  L  W  S  S  F  L  R  S  P  L  V  S  M  L  G  R  S  Y  V  F  L  Q  K  K  L  T  L  P  Q  L  S  V  Q  T  Y  Q  K  P  F  H  C  *  G  C  L  I  L  N  </second_frame>
            <third_frame>   E  L  *  C  F  A  L  *  L  E  S  L  L  F  I  L  R  Y  I  P  Q  R  L  F  N  P  C  Q  E  I  D  P  L  M  D  R  G  R  V  Y  P  V  Q  R  G  L  I  P  *  V  *  S  R  G  V  L  E  *  T  R  K  *  K  L  S  D  G  N  A  K  D  G  *  W  T  N  Q  N  L  S  C  S  *  H  V  V  *  V  L  L  A  R  G  Y  D  R  G  K  S  F  P  *  S  K  I  R  W  *  A  I  C  S  *  S  I  H  S  S  S  L  V  H  S  F  L  C  C  G  V  H  F  *  E  A  L  W  *  A  C  *  V  V  P  M  F  F  S  R  K  N  *  H  S  P  N  C  Q  C  K  H  I  K  S  L  S  I  A  K  G  V  *  Y  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69652" stop="69131"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSYDVLPYDWKACFLYFGTFPRGYLIPARKLIRLWIAEGFIQYRGDLSPECKAEEYLNELVNRNLVMVMQRTVDGQIKTCRVHDMLYEFCWQEATTEENLFHEVKFGGEQSVREVSTHRRLCIHSSVVEFISKKPSGEHVRSFLCFSPEKIDTPPTVSANISKAFPLLRVFDTE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="74126" PGL_stop="74925"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74126" e_stop="74299"/>
            <exon e_start="74381" e_stop="74925"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.841" acc_prob="0.875" e_score="0.937"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="74126" e_stop="74299" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.841" acc_prob="0.875">
            <gDNA_intron_boundary i_start="74300" i_stop="74380" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.954">
            <gDNA_exon_boundary e_start="74381" e_stop="74925" e_length="545"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74126" stop="74299"/>
              <exon start="74381" stop="74925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547025" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTAAATTTTAGTCGTTTTCCTTATTTTTTTTCTTATTCAAAAATTGTATATGTATTGTGTTTCTTATGTTTTTTCATATTTTTTTGATGAAATAATCGATTGTTTGTTTTTATTAGATCTCAAATTAGCCACAAAATGAATGAATCATCTTCATCTATGAGGATTACCAGAG : GGTCTATAGTAAAATCAAAATAAGTTCAACATGAACAAACAATGGAAGAATTGAGATCAAAGAAAAAATATGACCCTACGGTAGTTCAAGAAGTTATTAACAATGCTAAAGCTAGAGGCATTAAAATTGTACAAGGAGGAAGAAAGAGGAAAGCAGTAAACATTGATTCAGAGGAAAATGCATGTGAAGTTGACAGATCTGAAGAACATCATAATCATGAGGTAGTGGCTTAAAACACAAATTTAGATACAATTTTTTTGTTACTTAGATGTCAATAAACAAAAAATTATTGTTTAAGTAAATTTTGTATTCACATAATTGTATATAGTATATTGCATGTTTAGTACATACATGTTTTAGTTATATATTTGTATATGTGTCTGTAGATTTGATTACTTTATACATACTTTAAGTTATGTATAATGAATAATATACTAAGTCTTAATAGTGGTAGTAGCAAATTGTATATTAAAGGCTCATTATTATTTTTGTTTTTGTATATATATACAAAAAGTAATTGGACTTAGTTATACAGATGAAAAAAT</gDNA_template>
            <first_frame> S  *  I  L  V  V  F  L  I  F  F  L  I  Q  K  L  Y  M  Y  C  V  S  Y  V  F  S  Y  F  F  D  E  I  I  D  C  L  F  L  L  D  L  K  L  A  T  K  *  M  N  H  L  H  L  *  G  L  P  E  :  G  L  *  *  N  Q  N  K  F  N  M  N  K  Q  W  K  N  *  D  Q  R  K  N  M  T  L  R  *  F  K  K  L  L  T  M  L  K  L  E  A  L  K  L  Y  K  E  E  E  R  G  K  Q  *  T  L  I  Q  R  K  M  H  V  K  L  T  D  L  K  N  I  I  I  M  R  *  W  L  K  T  Q  I  *  I  Q  F  F  C  Y  L  D  V  N  K  Q  K  I  I  V  *  V  N  F  V  F  T  *  L  Y  I  V  Y  C  M  F  S  T  Y  M  F  *  L  Y  I  C  I  C  V  C  R  F  D  Y  F  I  H  T  L  S  Y  V  *  *  I  I  Y  *  V  L  I  V  V  V  A  N  C  I  L  K  A  H  Y  Y  F  C  F  C  I  Y  I  Q  K  V  I  G  L  S  Y  T  D  E  K   </first_frame>
            <second_frame>  P  K  F  *  S  F  S  L  F  F  F  L  F  K  N  C  I  C  I  V  F  L  M  F  F  H  I  F  L  M  K  *  S  I  V  C  F  Y  *  I  S  N  *  P  Q  N  E  *  I  I  F  I  Y  E  D  Y  Q  R :   V  Y  S  K  I  K  I  S  S  T  *  T  N  N  G  R  I  E  I  K  E  K  I  *  P  Y  G  S  S  R  S  Y  *  Q  C  *  S  *  R  H  *  N  C  T  R  R  K  K  E  E  S  S  K  H  *  F  R  G  K  C  M  *  S  *  Q  I  *  R  T  S  *  S  *  G  S  G  L  K  H  K  F  R  Y  N  F  F  V  T  *  M  S  I  N  K  K  L  L  F  K  *  I  L  Y  S  H  N  C  I  *  Y  I  A  C  L  V  H  T  C  F  S  Y  I  F  V  Y  V  S  V  D  L  I  T  L  Y  I  L  *  V  M  Y  N  E  *  Y  T  K  S  *  *  W  *  *  Q  I  V  Y  *  R  L  I  I  I  F  V  F  V  Y  I  Y  K  K  *  L  D  L  V  I  Q  M  K  K  </second_frame>
            <third_frame>   L  N  F  S  R  F  P  Y  F  F  S  Y  S  K  I  V  Y  V  L  C  F  L  C  F  F  I  F  F  *  *  N  N  R  L  F  V  F  I  R  S  Q  I  S  H  K  M  N  E  S  S  S  S  M  R  I  T  R   : G  S  I  V  K  S  K  *  V  Q  H  E  Q  T  M  E  E  L  R  S  K  K  K  Y  D  P  T  V  V  Q  E  V  I  N  N  A  K  A  R  G  I  K  I  V  Q  G  G  R  K  R  K  A  V  N  I  D  S  E  E  N  A  C  E  V  D  R  S  E  E  H  H  N  H  E  V  V  A  *  N  T  N  L  D  T  I  F  L  L  L  R  C  Q  *  T  K  N  Y  C  L  S  K  F  C  I  H  I  I  V  Y  S  I  L  H  V  *  Y  I  H  V  L  V  I  Y  L  Y  M  C  L  *  I  *  L  L  Y  T  Y  F  K  L  C  I  M  N  N  I  L  S  L  N  S  G  S  S  K  L  Y  I  K  G  S  L  L  F  L  F  L  Y  I  Y  T  K  S  N  W  T  *  L  Y  R  *  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74404" stop="74613"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQHEQTMEELRSKKKYDPTVVQEVINNAKARGIKIVQGGRKRKAVNIDSEENACEVDRSEEHHNHEVVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="82022" PGL_stop="82422"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82022" e_stop="82422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="82022" e_stop="82422" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82022" stop="82422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATGGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAAAATTAGGGGATCGGGTGTCACGAACCGACACGTAGTTTTAGGGGATCGGGTGTCACGAACCGACACG</gDNA_template>
            <first_frame> N  S  S  V  E  V  G  Y  G  F  H  A  F  I  V  N  S  *  *  R  M  I  C  I  G  S  I  V  N  P  A  M  C  L  I  V  C  M  H  E  R  D  Y  I  I  V  I  I  L  S  M  M  K  L  L  N  P  K  S  *  *  K  P  N  L  F  L  M  M  M  P  W  *  G  R  R  L  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  W  K  E  I  R  G  S  G  V  T  N  R  H  V  K  L  G  D  R  V  S  R  T  D  T  *  F  *  G  I  G  C  H  E  P  T   </first_frame>
            <second_frame>  I  L  R  W  R  *  V  M  V  F  M  L  S  *  *  T  L  N  R  E  *  Y  V  L  V  V  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  *  A  *  *  S  Y  *  I  P  N  L  D  K  N  L  I  S  F  *  *  *  C  L  G  K  G  E  G  L  M  N  *  S  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  G  R  R  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  S  F  R  G  S  G  V  T  N  R  H  </second_frame>
            <third_frame>   F  F  G  G  G  R  L  W  F  S  C  F  H  S  K  L  L  I  E  N  D  M  Y  W  *  Y  C  K  P  C  Y  V  L  N  C  M  H  A  *  T  *  L  Y  N  C  D  Y  I  K  H  D  E  V  I  E  S  Q  I  L  I  K  T  *  S  L  F  N  D  D  A  L  V  R  E  K  A  *  *  T  K  V  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  M  E  G  D  *  G  I  G  C  H  E  P  T  R  K  I  R  G  S  G  V  T  N  R  H  V  V  L  G  D  R  V  S  R  T  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0329A12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="82548" PGL_stop="83027"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82548" e_stop="83027"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="82548" e_stop="83027" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82548" stop="82786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82549" stop="83027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAATATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAGTTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  I  E  G  A  E  C  H  V  P  T  Q  E  K  *  I  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  R  G  L  S  P  H  V  *  V  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  V  I  F  D  S  T  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T </first_frame>
            <second_frame>  H  E  P  T  H  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  L  R  E  R  S  V  T  Y  R  H  K  R  N  K  Y  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  F  D  G  N  C  *  *  Y  S  I  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  S  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G   </second_frame>
            <third_frame>   T  N  R  H  I  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  *  G  S  G  V  S  R  T  D  T  R  E  I  N  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  S  R  L  E  S  S  C  V  S  L  T  V  I  V  N  D  I  V  F  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  L  F  L  F  I  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82812" stop="83027"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPMISTQYPCFVLTPTFMFSSCLFVECSKRAVIFDSTVIQASLTTSEIQGELMLLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="98735" PGL_stop="102837"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98735" e_stop="98798"/>
            <exon e_start="100099" e_stop="100274"/>
            <exon e_start="101348" e_stop="101569"/>
            <exon e_start="102014" e_stop="102098"/>
            <exon e_start="102196" e_stop="102837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.185" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.980" e_score="0.991"/>
          <exon-intron don_prob="0.976" acc_prob="0.995" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98735" e_stop="98798" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="98799" i_stop="100098" i_length="1300"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100099" e_stop="100274" e_length="176"/>
          </exon>
          <intron i_serial="2" don_prob="0.185" acc_prob="0.986">
            <gDNA_intron_boundary i_start="100275" i_stop="101347" i_length="1073"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="101348" e_stop="101569" e_length="222"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.980">
            <gDNA_intron_boundary i_start="101570" i_stop="102013" i_length="444"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="102014" e_stop="102098" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.995">
            <gDNA_intron_boundary i_start="102099" i_stop="102195" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102196" e_stop="102837" e_length="642"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98735" stop="98798"/>
              <exon start="100099" stop="100274"/>
              <exon start="101348" stop="101569"/>
              <exon start="102014" stop="102098"/>
              <exon start="102196" stop="102408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101387" stop="101569"/>
              <exon start="102014" stop="102098"/>
              <exon start="102196" stop="102667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101387" stop="101569"/>
              <exon start="102014" stop="102098"/>
              <exon start="102196" stop="102397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101466" stop="101569"/>
              <exon start="102014" stop="102098"/>
              <exon start="102196" stop="102812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102206" stop="102837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTGCCATTGGACGAGAAGGAGGTGTGGCGCCACTTATAGCACTTGCACGATCTGATGTTGAG : GATGTCCATGAGACTGCAGCTGGGGCTCTCTGGAATCTTGCTTTCAACCCTGGTAATGCTTTCCGTATAGTGGAGGAAGGGGGAGTTCCTGCCCTTGTTCATCTTTGTTCGTCATCTATCTCAAAAATGGCACGCTTTATGGCTGCATTGGCGTTGGCTTATATGTTTGATGGAAG : AATGGATGGAGTTGCAGTTGTGGGAACCTCTTCAGAAAGCAACTCTAAGAGTGTAAACTTAGATGGAGCTCGAAGAATGGCTTTAAAGAACATTGAAGCTTTTATTCTTGCATTTTCTGATCCACAAGCATTTTCTGCTGCTGCTGCGTCATCTGTCCCTGCAGCTTTGACTCAAGTTACAGAATCAGCTCGTATTCATGAGGCAGGTCATCTTAGGTGCAG : TGGAGCTGAGATCGGCAGATTCGTTACAATGTTACGTAATTCGTCTTCTATTCTGAAAGCATGTGCTGCATTTGCCCTTCTTCAG : TTCACAATCCCTGGTGGTCGTCATGCACAACATCATGTCCGCCTATTGCAGAACACTGGAGCATCAAGGATTTTGCGTGCTGCTGCTGCAGCAGCCACTGCCCCTATTGAAGCCAAAATCTTTGCTCGAATCGTACTTCGGAACTTGGAGCACCATCAAATAGAATCCTCAACTTAAGGCCTGGTGACTACTAGTAGTAATCGTAGGCCGTACTCAGCAATAGTGATAGGTATCCGTATACTCCCGTCAGTGACATTGACATTAAGCTGCCAGTTTGTGTTAGCATACCAAAACTAACGGTGCTGGCTTTTGGGAAGAAGCAAAGGCTTCTTATTTTTCTACCCAAACGTCTGCCTGTGTTGGGTTTCTTTTAGCTTCCTTTCTTGGGTACATAGGCTGTGTGATATTTCCGCCCTTATGTTAGTTATTCTCGCTTGTCTCTTTGAGCTTAGGCTTGATAGATCTATTGACAGTGTGTTCTATAGTTCCGAAGTCCAGTTACTTTCGGATTCTGTATTTAATTTACCTGGCAGATGGTTTTATACCTGTACATTATATAGCTGCAGAGACGTCGTCGGCATGCTGACAATTTCTGTACAAACCGTTTGGGAAAAAATTTCTATGATATACTTGTGTTTCTAA</gDNA_template>
            <first_frame> Y  C  H  W  T  R  R  R  C  G  A  T  Y  S  T  C  T  I  *  C  *   : G  C  P  *  D  C  S  W  G  S  L  E  S  C  F  Q  P  W  *  C  F  P  Y  S  G  G  R  G  S  S  C  P  C  S  S  L  F  V  I  Y  L  K  N  G  T  L  Y  G  C  I  G  V  G  L  Y  V  *  W  K  :  N  G  W  S  C  S  C  G  N  L  F  R  K  Q  L  *  E  C  K  L  R  W  S  S  K  N  G  F  K  E  H  *  S  F  Y  S  C  I  F  *  S  T  S  I  F  C  C  C  C  V  I  C  P  C  S  F  D  S  S  Y  R  I  S  S  Y  S  *  G  R  S  S  *  V  Q  :  W  S  *  D  R  Q  I  R  Y  N  V  T  *  F  V  F  Y  S  E  S  M  C  C  I  C  P  S  S   : V  H  N  P  W  W  S  S  C  T  T  S  C  P  P  I  A  E  H  W  S  I  K  D  F  A  C  C  C  C  S  S  H  C  P  Y  *  S  Q  N  L  C  S  N  R  T  S  E  L  G  A  P  S  N  R  I  L  N  L  R  P  G  D  Y  *  *  *  S  *  A  V  L  S  N  S  D  R  Y  P  Y  T  P  V  S  D  I  D  I  K  L  P  V  C  V  S  I  P  K  L  T  V  L  A  F  G  K  K  Q  R  L  L  I  F  L  P  K  R  L  P  V  L  G  F  F  *  L  P  F  L  G  T  *  A  V  *  Y  F  R  P  Y  V  S  Y  S  R  L  S  L  *  A  *  A  *  *  I  Y  *  Q  C  V  L  *  F  R  S  P  V  T  F  G  F  C  I  *  F  T  W  Q  M  V  L  Y  L  Y  I  I  *  L  Q  R  R  R  R  H  A  D  N  F  C  T  N  R  L  G  K  N  F  Y  D  I  L  V  F  L  </first_frame>
            <second_frame>  I  A  I  G  R  E  G  G  V  A  P  L  I  A  L  A  R  S  D  V  E  :  D  V  H  E  T  A  A  G  A  L  W  N  L  A  F  N  P  G  N  A  F  R  I  V  E  E  G  G  V  P  A  L  V  H  L  C  S  S  S  I  S  K  M  A  R  F  M  A  A  L  A  L  A  Y  M  F  D  G  R :   M  D  G  V  A  V  V  G  T  S  S  E  S  N  S  K  S  V  N  L  D  G  A  R  R  M  A  L  K  N  I  E  A  F  I  L  A  F  S  D  P  Q  A  F  S  A  A  A  A  S  S  V  P  A  A  L  T  Q  V  T  E  S  A  R  I  H  E  A  G  H  L  R  C  S :   G  A  E  I  G  R  F  V  T  M  L  R  N  S  S  S  I  L  K  A  C  A  A  F  A  L  L  Q  :  F  T  I  P  G  G  R  H  A  Q  H  H  V  R  L  L  Q  N  T  G  A  S  R  I  L  R  A  A  A  A  A  A  T  A  P  I  E  A  K  I  F  A  R  I  V  L  R  N  L  E  H  H  Q  I  E  S  S  T  *  G  L  V  T  T  S  S  N  R  R  P  Y  S  A  I  V  I  G  I  R  I  L  P  S  V  T  L  T  L  S  C  Q  F  V  L  A  Y  Q  N  *  R  C  W  L  L  G  R  S  K  G  F  L  F  F  Y  P  N  V  C  L  C  W  V  S  F  S  F  L  S  W  V  H  R  L  C  D  I  S  A  L  M  L  V  I  L  A  C  L  F  E  L  R  L  D  R  S  I  D  S  V  F  Y  S  S  E  V  Q  L  L  S  D  S  V  F  N  L  P  G  R  W  F  Y  T  C  T  L  Y  S  C  R  D  V  V  G  M  L  T  I  S  V  Q  T  V  W  E  K  I  S  M  I  Y  L  C  F  * </second_frame>
            <third_frame>   L  P  L  D  E  K  E  V  W  R  H  L  *  H  L  H  D  L  M  L  R :   M  S  M  R  L  Q  L  G  L  S  G  I  L  L  S  T  L  V  M  L  S  V  *  W  R  K  G  E  F  L  P  L  F  I  F  V  R  H  L  S  Q  K  W  H  A  L  W  L  H  W  R  W  L  I  C  L  M  E   : E  W  M  E  L  Q  L  W  E  P  L  Q  K  A  T  L  R  V  *  T  *  M  E  L  E  E  W  L  *  R  T  L  K  L  L  F  L  H  F  L  I  H  K  H  F  L  L  L  L  R  H  L  S  L  Q  L  *  L  K  L  Q  N  Q  L  V  F  M  R  Q  V  I  L  G  A   : V  E  L  R  S  A  D  S  L  Q  C  Y  V  I  R  L  L  F  *  K  H  V  L  H  L  P  F  F  S :   S  Q  S  L  V  V  V  M  H  N  I  M  S  A  Y  C  R  T  L  E  H  Q  G  F  C  V  L  L  L  Q  Q  P  L  P  L  L  K  P  K  S  L  L  E  S  Y  F  G  T  W  S  T  I  K  *  N  P  Q  L  K  A  W  *  L  L  V  V  I  V  G  R  T  Q  Q  *  *  *  V  S  V  Y  S  R  Q  *  H  *  H  *  A  A  S  L  C  *  H  T  K  T  N  G  A  G  F  W  E  E  A  K  A  S  Y  F  S  T  Q  T  S  A  C  V  G  F  L  L  A  S  F  L  G  Y  I  G  C  V  I  F  P  P  L  C  *  L  F  S  L  V  S  L  S  L  G  L  I  D  L  L  T  V  C  S  I  V  P  K  S  S  Y  F  R  I  L  Y  L  I  Y  L  A  D  G  F  I  P  V  H  Y  I  A  A  E  T  S  S  A  C  *  Q  F  L  Y  K  P  F  G  K  K  F  L  *  Y  T  C  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98736" stop="98798"/>
                    <exon start="100099" stop="100274"/>
                    <exon start="101348" stop="101569"/>
                    <exon start="102014" stop="102098"/>
                    <exon start="102196" stop="102372"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAIGREGGVAPLIALARSDVEDVHETAAGALWNLAFNPGNAFRIVEEGGVPALVHLCSSSISKMARFMAALALAYMFDGRMDGVAVVGTSSESNSKSVNLDGARRMALKNIEAFILAFSDPQAFSAAAASSVPAALTQVTESARIHEAGHLRCSGAEIGRFVTMLRNSSSILKACAAFALLQFTIPGGRHAQHHVRLLQNTGASRILRAAAAAATAPIEAKIFARIVLRNLEHHQIESST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102493" stop="102837"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RCWLLGRSKGFLFFYPNVCLCWVSFSFLSWVHRLCDISALMLVILACLFELRLDRSIDSVFYSSEVQLLSDSVFNLPGRWFYTCTLYSCRDVVGMLTISVQTVWEKISMIYLCF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="105293" PGL_stop="102828"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105293" e_stop="105176"/>
            <exon e_start="104843" e_stop="104759"/>
            <exon e_start="104601" e_stop="104550"/>
            <exon e_start="104464" e_stop="104444"/>
            <exon e_start="104360" e_stop="104307"/>
            <exon e_start="104208" e_stop="104158"/>
            <exon e_start="104083" e_stop="104021"/>
            <exon e_start="103911" e_stop="103846"/>
            <exon e_start="103762" e_stop="103724"/>
            <exon e_start="103619" e_stop="103503"/>
            <exon e_start="103421" e_stop="103329"/>
            <exon e_start="103243" e_stop="102828"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="0.992"/>
          <exon-intron don_prob="0.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.279" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.491" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.416" e_score="0.981"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.875" acc_prob="0.593" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.164" acc_prob="0.268" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="105293" e_stop="105176" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="105175" i_stop="104844" i_length="332"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104843" e_stop="104759" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="104758" i_stop="104602" i_length="157"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="104601" e_stop="104550" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.279" acc_prob="0.998">
            <gDNA_intron_boundary i_start="104549" i_stop="104465" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="104464" e_stop="104444" e_length="21"/>
          </exon>
          <intron i_serial="4" don_prob="0.491" acc_prob="0.934">
            <gDNA_intron_boundary i_start="104443" i_stop="104361" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="104360" e_stop="104307" e_length="54"/>
          </exon>
          <intron i_serial="5" don_prob="0.915" acc_prob="0.416">
            <gDNA_intron_boundary i_start="104306" i_stop="104209" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="104208" e_stop="104158" e_length="51"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="104157" i_stop="104084" i_length="74"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="104083" e_stop="104021" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="0.875" acc_prob="0.593">
            <gDNA_intron_boundary i_start="104020" i_stop="103912" i_length="109"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="103911" e_stop="103846" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="103845" i_stop="103763" i_length="83"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="103762" e_stop="103724" e_length="39"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="103723" i_stop="103620" i_length="104"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="103619" e_stop="103503" e_length="117"/>
          </exon>
          <intron i_serial="10" don_prob="0.164" acc_prob="0.268">
            <gDNA_intron_boundary i_start="103502" i_stop="103422" i_length="81"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="103421" e_stop="103329" e_length="93"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="103328" i_stop="103244" i_length="85"/>
          </intron>
          <exon e_serial="12" e_score="0.969">
            <gDNA_exon_boundary e_start="103243" e_stop="102828" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105293" stop="105176"/>
              <exon start="104843" stop="104759"/>
              <exon start="104601" stop="104550"/>
              <exon start="104464" stop="104444"/>
              <exon start="104360" stop="104307"/>
              <exon start="104208" stop="104158"/>
              <exon start="104083" stop="104021"/>
              <exon start="103911" stop="103846"/>
              <exon start="103762" stop="103724"/>
              <exon start="103619" stop="103503"/>
              <exon start="103421" stop="103329"/>
              <exon start="103243" stop="102828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105257" stop="105176"/>
              <exon start="104843" stop="104759"/>
              <exon start="104601" stop="104550"/>
              <exon start="104464" stop="104444"/>
              <exon start="104360" stop="104307"/>
              <exon start="104208" stop="104158"/>
              <exon start="104083" stop="104021"/>
              <exon start="103911" stop="103846"/>
              <exon start="103762" stop="103724"/>
              <exon start="103619" stop="103503"/>
              <exon start="103421" stop="103329"/>
              <exon start="103243" stop="103093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATCCAACATTTATACAACTATTTTCCCAATGAAATTCACTTTGATTTTCATTAATTTCCTCCTCTTCACCCTTCACTCAATCACTACTTATTCTCTTCCTTTTGTTGTCTTTCATG : GAATATCAGATAAATGTAGCAATGGAGGAATCACACATTTCACAGAGCTTTTAAGCAACTGGTCAGGCTCTTCAGGACATTGCAT : AGAAATTGGTAATGGAGAATGGGACTCCTGGTTTATGCCTTTTGCCAAACAG : GTAGACATTGCTTGCCAGAAG : TTAAAAAAAATGAGTGAGCTTAGTGAAGGTTACAACATGATCGGGCTCTCCCAG : GGGAACATGGTTGGTAGAGGGGTTATTGAGTTCTGTGATGATGGACCTCCG : GTGAGGAATCTTATATCTCTAGCTGGTCCTCATGCTGGGATTGCTTCTATTCCCTTTTGTGGT : TCAGGTATCTGGTGCATTCTTGAAGACTCTTTGCTCAAGTTAGCAATTTACAGCAATTTTATCCAG : GCACATCTTGCTCCTGCAGGTTACATAAAAATCCCAACT : GACATAGCTAACTATAGAAAAGGATGTAAGTTCCTTCCAGTACTCAACAATGAGGTACACAGAAACTCTACTTACAAGAAAAGGTTTGCAAGCTTGGAAAATTTAGTACTTATTATG : TTTGAAAAAGATGAAATTTTGGTACCAAAACAGACCTCATGGTTTGGGTACTACCCTGATGGTTCCTTCACCACTGTTTTGCCTGCTCACAAG : ACAAAGCTGTATACAGAAGACTGGATTGGTTTAAAGAAGTTGGATGAAGCTGGAAAAGTGAAGTTGTTGAAAGTATGTGGAAGTCATCTTGAAATATCTACTAGTGAAATGAAGAAAAACATTCTACCATACTTGCTGGATACAGTGACTAAACCAAGATCATCTGGTCTGTTATGGCCTTCGTCTTTCGACGATGAATGCAATGAAGAAAAAATTAGCTTAAGATCATGGAAATTTTAGGTAGCTAGTCTTTTCACTTCTTCCCACAACCTGATTGTTTTCCACTTGGTATGTCAAGAAACAATGTGTTTCAAAACATCATTTTTCCCAAACTTTGCAAGTAGCAAACTATGTGTTTGGTATAAAGAAATTTCAGATGGTTGAAAGACATCATCATCCAAACCACTTAGAAACAC</gDNA_template>
            <first_frame> *  S  N  I  Y  T  T  I  F  P  M  K  F  T  L  I  F  I  N  F  L  L  F  T  L  H  S  I  T  T  Y  S  L  P  F  V  V  F  H   : G  I  S  D  K  C  S  N  G  G  I  T  H  F  T  E  L  L  S  N  W  S  G  S  S  G  H  C  I :   E  I  G  N  G  E  W  D  S  W  F  M  P  F  A  K  Q  :  V  D  I  A  C  Q  K  :  L  K  K  M  S  E  L  S  E  G  Y  N  M  I  G  L  S  Q  :  G  N  M  V  G  R  G  V  I  E  F  C  D  D  G  P  P  :  V  R  N  L  I  S  L  A  G  P  H  A  G  I  A  S  I  P  F  C  G  :  S  G  I  W  C  I  L  E  D  S  L  L  K  L  A  I  Y  S  N  F  I  Q  :  A  H  L  A  P  A  G  Y  I  K  I  P  T  :  D  I  A  N  Y  R  K  G  C  K  F  L  P  V  L  N  N  E  V  H  R  N  S  T  Y  K  K  R  F  A  S  L  E  N  L  V  L  I  M  :  F  E  K  D  E  I  L  V  P  K  Q  T  S  W  F  G  Y  Y  P  D  G  S  F  T  T  V  L  P  A  H  K  :  T  K  L  Y  T  E  D  W  I  G  L  K  K  L  D  E  A  G  K  V  K  L  L  K  V  C  G  S  H  L  E  I  S  T  S  E  M  K  K  N  I  L  P  Y  L  L  D  T  V  T  K  P  R  S  S  G  L  L  W  P  S  S  F  D  D  E  C  N  E  E  K  I  S  L  R  S  W  K  F  *  V  A  S  L  F  T  S  S  H  N  L  I  V  F  H  L  V  C  Q  E  T  M  C  F  K  T  S  F  F  P  N  F  A  S  S  K  L  C  V  W  Y  K  E  I  S  D  G  *  K  T  S  S  S  K  P  L  R  N   </first_frame>
            <second_frame>  N  P  T  F  I  Q  L  F  S  Q  *  N  S  L  *  F  S  L  I  S  S  S  S  P  F  T  Q  S  L  L  I  L  F  L  L  L  S  F  M  :  E  Y  Q  I  N  V  A  M  E  E  S  H  I  S  Q  S  F  *  A  T  G  Q  A  L  Q  D  I  A   : *  K  L  V  M  E  N  G  T  P  G  L  C  L  L  P  N  R :   *  T  L  L  A  R  S :   *  K  K  *  V  S  L  V  K  V  T  T  *  S  G  S  P  R :   G  T  W  L  V  E  G  L  L  S  S  V  M  M  D  L  R :   *  G  I  L  Y  L  *  L  V  L  M  L  G  L  L  L  F  P  F  V  V :   Q  V  S  G  A  F  L  K  T  L  C  S  S  *  Q  F  T  A  I  L  S  R :   H  I  L  L  L  Q  V  T  *  K  S  Q  L :   T  *  L  T  I  E  K  D  V  S  S  F  Q  Y  S  T  M  R  Y  T  E  T  L  L  T  R  K  G  L  Q  A  W  K  I  *  Y  L  L  C :   L  K  K  M  K  F  W  Y  Q  N  R  P  H  G  L  G  T  T  L  M  V  P  S  P  L  F  C  L  L  T  R :   Q  S  C  I  Q  K  T  G  L  V  *  R  S  W  M  K  L  E  K  *  S  C  *  K  Y  V  E  V  I  L  K  Y  L  L  V  K  *  R  K  T  F  Y  H  T  C  W  I  Q  *  L  N  Q  D  H  L  V  C  Y  G  L  R  L  S  T  M  N  A  M  K  K  K  L  A  *  D  H  G  N  F  R  *  L  V  F  S  L  L  P  T  T  *  L  F  S  T  W  Y  V  K  K  Q  C  V  S  K  H  H  F  S  Q  T  L  Q  V  A  N  Y  V  F  G  I  K  K  F  Q  M  V  E  R  H  H  H  P  N  H  L  E  T  </second_frame>
            <third_frame>   I  Q  H  L  Y  N  Y  F  P  N  E  I  H  F  D  F  H  *  F  P  P  L  H  P  S  L  N  H  Y  L  F  S  S  F  C  C  L  S  W :   N  I  R  *  M  *  Q  W  R  N  H  T  F  H  R  A  F  K  Q  L  V  R  L  F  R  T  L  H  :  R  N  W  *  W  R  M  G  L  L  V  Y  A  F  C  Q  T   : G  R  H  C  L  P  E   : V  K  K  N  E  *  A  *  *  R  L  Q  H  D  R  A  L  P   : G  E  H  G  W  *  R  G  Y  *  V  L  *  *  W  T  S   : G  E  E  S  Y  I  S  S  W  S  S  C  W  D  C  F  Y  S  L  L  W   : F  R  Y  L  V  H  S  *  R  L  F  A  Q  V  S  N  L  Q  Q  F  Y  P   : G  T  S  C  S  C  R  L  H  K  N  P  N   : *  H  S  *  L  *  K  R  M  *  V  P  S  S  T  Q  Q  *  G  T  Q  K  L  Y  L  Q  E  K  V  C  K  L  G  K  F  S  T  Y  Y   : V  *  K  R  *  N  F  G  T  K  T  D  L  M  V  W  V  L  P  *  W  F  L  H  H  C  F  A  C  S  Q   : D  K  A  V  Y  R  R  L  D  W  F  K  E  V  G  *  S  W  K  S  E  V  V  E  S  M  W  K  S  S  *  N  I  Y  *  *  N  E  E  K  H  S  T  I  L  A  G  Y  S  D  *  T  K  I  I  W  S  V  M  A  F  V  F  R  R  *  M  Q  *  R  K  N  *  L  K  I  M  E  I  L  G  S  *  S  F  H  F  F  P  Q  P  D  C  F  P  L  G  M  S  R  N  N  V  F  Q  N  I  I  F  P  K  L  C  K  *  Q  T  M  C  L  V  *  R  N  F  R  W  L  K  D  I  I  I  Q  T  T  *  K  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105290" stop="105176"/>
                    <exon start="104843" stop="104759"/>
                    <exon start="104601" stop="104550"/>
                    <exon start="104464" stop="104444"/>
                    <exon start="104360" stop="104307"/>
                    <exon start="104208" stop="104158"/>
                    <exon start="104083" stop="104021"/>
                    <exon start="103911" stop="103846"/>
                    <exon start="103762" stop="103724"/>
                    <exon start="103619" stop="103503"/>
                    <exon start="103421" stop="103329"/>
                    <exon start="103243" stop="103004"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNIYTTIFPMKFTLIFINFLLFTLHSITTYSLPFVVFHGISDKCSNGGITHFTELLSNWSGSSGHCIEIGNGEWDSWFMPFAKQVDIACQKLKKMSELSEGYNMIGLSQGNMVGRGVIEFCDDGPPVRNLISLAGPHAGIASIPFCGSGIWCILEDSLLKLAIYSNFIQAHLAPAGYIKIPTDIANYRKGCKFLPVLNNEVHRNSTYKKRFASLENLVLIMFEKDEILVPKQTSWFGYYPDGSFTTVLPAHKTKLYTEDWIGLKKLDEAGKVKLLKVCGSHLEISTSEMKKNILPYLLDTVTKPRSSGLLWPSSFDDECNEEKISLRSWKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="104212" e_stop="104158"/>
            <exon e_start="104083" e_stop="104021"/>
            <exon e_start="103911" e_stop="103846"/>
            <exon e_start="103762" e_stop="103724"/>
            <exon e_start="103619" e_stop="103503"/>
            <exon e_start="103421" e_stop="103329"/>
            <exon e_start="103243" e_stop="103144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.875" acc_prob="0.593" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.164" acc_prob="0.268" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104212" e_stop="104158" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="104157" i_stop="104084" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104083" e_stop="104021" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.875" acc_prob="0.593">
            <gDNA_intron_boundary i_start="104020" i_stop="103912" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103911" e_stop="103846" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="103845" i_stop="103763" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="103762" e_stop="103724" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="103723" i_stop="103620" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="103619" e_stop="103503" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.164" acc_prob="0.268">
            <gDNA_intron_boundary i_start="103502" i_stop="103422" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="103421" e_stop="103329" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="103328" i_stop="103244" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="103243" e_stop="103144" e_length="100"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104212" stop="104158"/>
              <exon start="104083" stop="104021"/>
              <exon start="103911" stop="103846"/>
              <exon start="103762" stop="103724"/>
              <exon start="103619" stop="103503"/>
              <exon start="103421" stop="103329"/>
              <exon start="103243" stop="103144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275670" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAGGGGAACATGGTTGGTAGAGGGGTTATTGAGTTCTGTGATGATGGACCTCCG : GTGAGGAATCTTATATCTCTAGCTGGTCCTCATGCTGGGATTGCTTCTATTCCCTTTTGTGGT : TCAGGTATCTGGTGCATTCTTGAAGACTCTTTGCTCAAGTTAGCAATTTACAGCAATTTTATCCAG : GCACATCTTGCTCCTGCAGGTTACATAAAAATCCCAACT : GACATAGCTAACTATAGAAAAGGATGTAAGTTCCTTCCAGTACTCAACAATGAGGTACACAGAAACTCTACTTACAAGAAAAGGTTTGCAAGCTTGGAAAATTTAGTACTTATTATG : TTTGAAAAAGATGAAATTTTGGTACCAAAACAGACCTCATGGTTTGGGTACTACCCTGATGGTTCCTTCACCACTGTTTTGCCTGCTCACAAG : ACAAAGCTGTATACAGAAGACTGGATTGGTTTAAAGAAGTTGGATGAAGCTGGAAAAGTGAAGTTGTTGAAAGTATGTGGAAGTCATCTTGAAATATCTA</gDNA_template>
            <first_frame> P  G  E  H  G  W  *  R  G  Y  *  V  L  *  *  W  T  S   : G  E  E  S  Y  I  S  S  W  S  S  C  W  D  C  F  Y  S  L  L  W   : F  R  Y  L  V  H  S  *  R  L  F  A  Q  V  S  N  L  Q  Q  F  Y  P   : G  T  S  C  S  C  R  L  H  K  N  P  N   : *  H  S  *  L  *  K  R  M  *  V  P  S  S  T  Q  Q  *  G  T  Q  K  L  Y  L  Q  E  K  V  C  K  L  G  K  F  S  T  Y  Y   : V  *  K  R  *  N  F  G  T  K  T  D  L  M  V  W  V  L  P  *  W  F  L  H  H  C  F  A  C  S  Q   : D  K  A  V  Y  R  R  L  D  W  F  K  E  V  G  *  S  W  K  S  E  V  V  E  S  M  W  K  S  S  *  N  I   </first_frame>
            <second_frame>  Q  G  N  M  V  G  R  G  V  I  E  F  C  D  D  G  P  P  :  V  R  N  L  I  S  L  A  G  P  H  A  G  I  A  S  I  P  F  C  G  :  S  G  I  W  C  I  L  E  D  S  L  L  K  L  A  I  Y  S  N  F  I  Q  :  A  H  L  A  P  A  G  Y  I  K  I  P  T  :  D  I  A  N  Y  R  K  G  C  K  F  L  P  V  L  N  N  E  V  H  R  N  S  T  Y  K  K  R  F  A  S  L  E  N  L  V  L  I  M  :  F  E  K  D  E  I  L  V  P  K  Q  T  S  W  F  G  Y  Y  P  D  G  S  F  T  T  V  L  P  A  H  K  :  T  K  L  Y  T  E  D  W  I  G  L  K  K  L  D  E  A  G  K  V  K  L  L  K  V  C  G  S  H  L  E  I  S  </second_frame>
            <third_frame>   R  G  T  W  L  V  E  G  L  L  S  S  V  M  M  D  L  R :   *  G  I  L  Y  L  *  L  V  L  M  L  G  L  L  L  F  P  F  V  V :   Q  V  S  G  A  F  L  K  T  L  C  S  S  *  Q  F  T  A  I  L  S  R :   H  I  L  L  L  Q  V  T  *  K  S  Q  L :   T  *  L  T  I  E  K  D  V  S  S  F  Q  Y  S  T  M  R  Y  T  E  T  L  L  T  R  K  G  L  Q  A  W  K  I  *  Y  L  L  C :   L  K  K  M  K  F  W  Y  Q  N  R  P  H  G  L  G  T  T  L  M  V  P  S  P  L  F  C  L  L  T  R :   Q  S  C  I  Q  K  T  G  L  V  *  R  S  W  M  K  L  E  K  *  S  C  *  K  Y  V  E  V  I  L  K  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0329A12.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104211" stop="104158"/>
                    <exon start="104083" stop="104021"/>
                    <exon start="103911" stop="103846"/>
                    <exon start="103762" stop="103724"/>
                    <exon start="103619" stop="103503"/>
                    <exon start="103421" stop="103329"/>
                    <exon start="103243" stop="103145"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGNMVGRGVIEFCDDGPPVRNLISLAGPHAGIASIPFCGSGIWCILEDSLLKLAIYSNFIQAHLAPAGYIKIPTDIANYRKGCKFLPVLNNEVHRNSTYKKRFASLENLVLIMFEKDEILVPKQTSWFGYYPDGSFTTVLPAHKTKLYTEDWIGLKKLDEAGKVKLLKVCGSHLEIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 171 chains have been computed
$ 
$ memory statistics:
$ 146728 bytes spliced alignments in total
$ 63 spliced alignments have been stored
$ 2329 bytes was the average size of a spliced alignment
$ 30944 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1547 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 214 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 07:21:42
-->
