<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 07:41:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581303" ref_strand="+" ref_description="SGN-U581303 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-69) Polyprotein,; ">
      <seq>cacgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtctgggacaatttctcctaatatgtccaatctccccacatccataacattctctggagtcaatcataggcccctcggagaagtgttgaccggtctgaggtggtcccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctccctttcgaagcctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaagtccgggggatatacttctccataaacaaactagagaatgaggcccaagtcataggtggtgcctctattggttgacactcgatatgtgaccgccaccacattttggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcctgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcactgccctagtatcagatgggctaggtgctcgtcctcttcctctagaggacgtcctcccacgacctctaccacggccccttgccgctgttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="-" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="32926" stop="30819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32626" g_stop="31118" g_length="1509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1508" r_length="1508" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="-" ref_id="SGN-U581303" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>1509</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32626" e_stop="31118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAATAGGCATGTAAAGCAATTCACAAGGTAAATTAAAACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACTGAAAGATTACCTGTGATGACAGCATCAGATGTCTCCGCCTCAGATCGCCCAGGGAAAGCGTAACAATGGGCCCCATTACCTGTCTGCCCGTTGCCCCTACCATGTGGTGCTGTAGTGGCTTTAGTTTGCATGTCACCCCGGCCGTTTTGGTGACCACCATTACCTCATCCACCACGTCCCCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGGT-TTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAGCACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTATAGTCTGTAGTGAAGACTGAATTTGTCGGACTGAGTAACCTCCTGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTTTTCTATGTCGATGCCATGGTGAAGTCATTGGGCTTCACTCCTTCCACCTTTATCACGAAGTCTACCACTTCTTGAAAGGATATTGCAGTAGCCGCTACCTGTAAGGCTGAAATCCGCAATTCTGATCTCAACCCCTTAACAAAGCGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTTAGCCTCATATGCAATAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCGCAAGTCATAGGTGGTGCCTCTGTTGGTTTACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTGGTGACAATCAAATAGAAAATCAGAAGCATCCTCCGATTCAGCACTGTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTACAGGCACTGTAGTCAGACGAGGAAATGTGCGTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCCGCATGTTGTACTTCCGGAGCCTGAGGTGCTGGTGCAGAAAACAGTGGAGGCGCTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACATGATTGATCATCTCTGGGGTAGGTTGGGGAGGCAATCCCTCATTCTGTACTTGTTCAGTTTCCCCTTCCTCACCTTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTTACTGCCCTAGTATCAGATGGGCTACGTGTTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTCCCACGGCCTCTTGCCGCTACTCTT</genome_strand>
        <mrna_strand>CACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACT-TGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAAC-TTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590648" ref_strand="+" ref_description="SGN-U590648 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-17) Polyprotein,; ">
      <seq>gcacctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="+" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="30883" stop="32037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31182" g_stop="31737" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="+" ref_id="SGN-U590648" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31182" e_stop="31737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACGTAGCCCATCTGATACTAGGGCAGTAACTCCTCCACCGACTGAAGAAGTAGTAAGAGAAGGTGAGGAAGGGGAAACTGAACAAGTACAGAATGAGGGATTGCCTCCCCAACCTACCCCAGAGATGATCAATCATGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAAGCGCCTCCACTGTTTTCTGCACCAGCACCTCAGGCTCCGGAAGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATACGCACATTTCCTCGTCTGACTACAGTGCCTGTAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAACAGTGCTGAATCGGAGGATGCTTCTGATTTTCTATTTGATTGTCACCAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTAAACCAACAGAGGCACCACCTATGACTTGCGCATCATTCT</genome_strand>
        <mrna_strand>GCACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="-" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="33136" stop="32213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32837" g_stop="32513" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="-" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32837" e_stop="32513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGGGAAAGCAAAGTCCAACCCAGAATTACATCAAAGTCAACCATTT-TAAGATAACCAAGTCCACATAAGTACTGCTCCCCACAAAAGTCACCAAACAAGACCTATATACTTTATTAACTATCACAGACTCACCCACCGGGGTAGAAACACGAATAGGCATGTAAAGCAATTCACAAGGTAAATTAAAACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603972" ref_strand="+" ref_description="SGN-U603972 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>attcaaaccctcattcttttagcctaattagtatataattaagaataaaagatgacaataatagcccactaattaacttaaggttaactcttttatcccccaagaaattgagttattaatatagacccacgaaatatataattatagcaggaataggccaaaacgcccctttaaaacttaaccagaattccaacttcaactgggattacgcaacctgtgacatcccgtcgcgcttgcgacggtccgtcatgcagggtcgtcagaaacttgatttcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="-" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="97519" stop="96640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97219" g_stop="96940" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="-" ref_id="SGN-U603972" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97219" e_stop="96940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAACCCTCCTTCTTTTACCCTAATTAACATGTAATTAAGTGTAAAAGATGACAATAATGACCCACAATTTAACTCAAGGTTACCTCTTTTATCCTCCAAGAAATTGAGTTATTAATATAAACCCACGAAATATATAATTATAGCAGGAATAGTCCAAAAACATCCCTTTAAAACTTAACCAGAATTCCGACTTCAACTGGGATTACGCAACCTGTGACGGCCCGTCGCGCCTGCGACGGTCCGTCATACAGGTTCGTCAGAGACTCGATTTCCTTA</genome_strand>
        <mrna_strand>ATTCAAACCCTCATTCTTTTAGCCTAATTAGTATATAATTAAGAATAAAAGATGACAATAATAGCCCACTAATTAACTTAAGGTTAACTCTTTTATCCCCCAAGAAATTGAGTTATTAATATAGACCCACGAAATATATAATTATAGCAGGAATAGGCC-AAAACGCCCCTTTAAAACTTAACCAGAATTCCAACTTCAACTGGGATTACGCAACCTGTGACATCCCGTCGCGCTTGCGACGGTCCGTCATGCAGGGTCGTCAGAAACTTGATTTCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593741" ref_strand="+" ref_description="SGN-U593741 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cagccctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="+" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="97218" stop="98415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97517" g_stop="97794" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97795" i_stop="97871" i_length="77">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97872" g_stop="98115" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="519" r_length="244" r_score="0.881"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="+" ref_id="SGN-U593741" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97517" e_stop="97794"/>
          <exon e_start="97872" e_stop="98115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGACTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACTAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAAGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACTAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATTTTGTAAGATGTTAATATATTCAATCTAATGAACCTAATTCCCAAATGGGTATGAGGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGTTAACTGTAAATGTTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATATT</genome_strand>
        <mrna_strand>CAGCCCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCAC.............................................................................GTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599718" ref_strand="+" ref_description="SGN-U599718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205427|gb|ABI34389.1| (e_value=5e-23) Polyprotein,; ">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="+" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="104728" stop="105505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105028" g_stop="105204" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="+" ref_id="SGN-U599718" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105028" e_stop="105204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGTTATCCCAATGGCCACCAAACTCTATCATACATGCACGAAGCATATACTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="+" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="104943" stop="106034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105243" g_stop="105727" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="+" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105243" e_stop="105727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAATTCCGCATGCAATGTTTTCCAAAACGTAGAATTAAACTGTGTACCTCTATCTGATATGATGGATAGTGGAACCCCATGCAATCGAACGATTTCTGAGATATAGATCTTGGTTAACTTCTCTGCATTGTAAGTCACCTTTACCGGAATGAAATGAGCAGA-TTAGTTAACCTATCAACAATCACCCAAATGGAGTCATACTTACCCATTGTCCTTGGAAGACCAACCACAAAGTCCATTGCAATTCTTTCCCACTTCCATTCCGGAATGGGCATTCTCTAAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTGACTTGTTGACAGTTTGGACACTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGTTTTAGGTCACGATACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTATCAGAATAGTGTTGATCAAATCATCGAC</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579150" ref_strand="+" ref_description="SGN-U579150 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=9e-121) Polyprotein,; (*ATH) ATMG00860.1 (e_value=3e-15) | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-49) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>gcggccgctctatattagntggacccgcgggctgcaggaattcggcacgaggagaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagactttgctcaaaaactcttgaaagtgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtgcccgtttcaagatcgaagcagaagtcaatatccctttctggtggcataccggggagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="+" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="106203" stop="107619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106507" g_stop="107319" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="865" r_length="813" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="+" ref_id="SGN-U579150" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106507" e_stop="107319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACTACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAAGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTCGTTTGATAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACACCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTGTCTTAAATCCGCGGGAGCCATTCTATAAGGGGGTATCGAAATGGGGAGAGTACCCGGTTCAAGGTCAATGCAAAAATCAATATCCCTATCTGGTGGCATACTAGGAAGATCTG</genome_strand>
        <mrna_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAAGTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTGCCCGTTTCAAGATCGAAGCAGAAGTCAATATCCCTTTCTGGTGGCATACCGGGGAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579265" ref_strand="+" ref_description="SGN-U579265 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|86371679|gb|ABC94893.1| (e_value=8e-76) polyprotein; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-38) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>ccgtgggaggacgtcctcaagaagaagaggacaaacacctagcccatttgatgctagggcggtgactcctccaccgactgaggaagtagtaagagagggtgaggaaggggagaatgaacaagtgcaaaatgaggaattgccaccccaacctaccccagagatgatcaatcaggttctcgcttatcttagtgggttgtctgattagggtcaggcacctctagtgttttctacaccagcacctcagggtccgaaggtacaacatgcggctattgtggctccccgcatggatgccttatcggacataggcacgtttccacatctgattactgggcctataatgataaatgatcagcgtgaaattttcagtaagttcttaaaatttaaacctccagtcttcaagggtgctgaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatgagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcatcattctctagcttgtttatggagaagtatatccccccaactttgagggataggaaaagagatgagttcttgagcctagagcaaggtaggatgtcggttactgcatatgaggctaagtttcgtgcattatcaaggtatgccacccaactttgtttcagtccacaagagcggattcgccgttttgtgaaggggttgagatcagagttgcggatttcagccttacaggtagcggctacagcgaaatcctttcaagaagtggtggacttcgtgatagaggtagagggagtgaaaagcccaacttcaagagttgttgagcaaaggcttcattagaccaagtgcatctccttggggtgctccagttttgtttgtgaagaagaaggatgggagttttcggatgtgcatagactaccggcagttgaacaaggtaatcataaagaacaagtatcctcttcctcgcattgatgacttgttcgatcagttacaaggtgcttgtgtcttcactaagattgacttgagatccggttgtcatcaattgaaaatacgggcaacggatgtgccaaagactgcttttagaaccaggtatgggcattacgaatttgtagtgatgtcttttggtcttacgaatgcccctgctgcgttcatgagtttgatgaacgggattttaagccatatttggatctctttgtgatcgtatttattgatgatatactgatatactctaaaagtaaggaggaacatgaggagcatttgagaatggtattggaaatgttgagggagaaaaagctttatgccaagttctctaagtgttagttttggctagatgcagtgtccttcttggggcacgtggtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="-" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="109486" stop="106336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109187" g_stop="108315" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="873" r_length="873" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108314" i_stop="107200" i_length="1115">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107199" g_stop="106636" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="1436" r_length="563" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="-" ref_id="SGN-U579265" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109187" e_stop="108315"/>
          <exon e_start="107199" e_stop="106636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAACCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTAATGAAGTAGTAAGAGAAGGGGATGATGGGGAGAATGAACAAGTGCAGAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCAGGTTATCTGATCAGGGACAGGCCCCTCCAGTGTTTTCTGCACCAACATCTCCGGTTTCAGAGGTACAACATGCAGCAACTATGGCTCCTCGTATGGATGCCTTATTGGACATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCTGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACAGTCACGAGCTACTACACAAGATGAGTATAGTAGAGCGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTACAAGAGGTGGTAGACTTCGTGATAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCACGACATCGACATCAAAAAGGTTTCAAAAGGGAGGCGAGTTTAATGGTTCTTACTCTAGAGGACAACGTTGCGTAGGTTACTTAGTTCGACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGGCTCCAGAGAGTGTTATGGGTGTGGGGAGACTGGGCATATTAGGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCCGAGGTGATGGGTAAACTGGATCCACTACATCACAACATGGTAAGGGCAACGGACAGATGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCCGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTGTTTGGTGAATTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAAGTTGCGATTTTGGATTGTAATGCTAAAACGATGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCCTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTAAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTAGTATGCCACCAGATAGGGATATTGATTTTTGCATTGACCTTGAACCGGGTACTCTCCCCATTTCGATACCCCCTTATAGAATGGCTCCCGCGGATTTAAGACAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGTGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTATCAAACGAGGTATGGGCATTACGAATTTGTAGTAATGTCTTTTGGTCTTACGAATGCCCTTGCTGCGTTCATGAGCTTGATGAACGGGATTTTTAAGCCATATTTGGACCTCTTCGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTAGTTTCTA</genome_strand>
        <mrna_strand>CCGTGGGAGGACGTCCTCAAGAAGAAGAGGACAAACACCTAGCCCATTTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATTAGGGTCAGGCACCTCTAGTGTTTTCTACACCAGCACCTCAGGGTCCGAAGGTACAACATGCGGCTATTGTGGCTCCCCGCATGGATGCCTTATCGGACATAGGCACGTTTCCACATCTGATTACTGGGCCTATAATGATAAATGATCAGCGTGAAATTTTCAGTAAGTTCTTAAAATTTAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATGAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCCAACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCCTTTCAAGAAGTGGTGGACTTCGTGATAGAGGTAGAGGGAGTGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAATCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCACTAAGATTGACTTGAGATCCGGTTGTCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGA-TTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTTAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578865" ref_strand="+" ref_description="SGN-U578865 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=8e-164) Polyprotein,; (*SWP) sp|Q99315|YG31B_YEAST (e_value=2e-17) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>aagaacagcgacaaggggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcgcctagcccatctgatactagggcagtgactcctccaccgactgaggaagtaataagagaaggggaggatggggaaactgaacaagtgcagaatgagggattgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttatctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccgcatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatcggaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttgggcctcattctctagcttgtttatggagaagtatatcccccgaactttgagggataggaaaagggatgagttcttgagcctagagcaaggtaggatgtcggtcaatgcatatgaggctaagtttcgtgcattatcccggtatgccacccaactgtgtttcagtccacaagagcgaattcgccggtttgtgaaggggttgaggtcagaattgcagatttcggccttacaaatagcggcaacgacaaaatccttccaagaggtggtagactttgtgatagaagtggaaggagtgaagccagacgacttcatcccgacatcgacatcaaaaaggtttcgaaagggaggtgagtttaatggtgcttacactagaggacagggttagggaagttactcagtccgaccaattcagtcttcactacagactgtagttgggggtccacctccgaccggtcaacacttctctgagagacctatgcatgaacccagagagtgctatggatgtggggagattggacatattaagagatattgtccaaaacagagttacagacctccaaaggttagaggtagaggtggtcatggcagaggccgttattctggaggacgtggcggtcgaggaaatggtggtcaccaaaacggccgaggtgatgggaaaactggagccactacatcacaacaaggtaggggcaacagacagaagaacgatagggcccattgttacgctttccctgggcggtctgaagcggaggaatctgatgctgtcatcacaggtaatcttttggtttgtgattgcatggcttctgtattgtttgatcctggatccacgttttcttatgtatcttcctcatttgctaacggtctaaatttacattgtgaattacttgatatgcctattcgtgtttctactccggtgggtgagtctgtggtagttgaaaaggtatataggtcttgtttggtgaactttgtggggagcaacacttatgtagatttggttatcttagaaatggttgattttgatgtaattctgggtatgacttggctttctccgcaatttgcgatcttggattgtaatgctaaaacggtgacattagccaagcctgggacagatccgttagtgtgggagggtgactacacttccaatccggtgcgcatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggatgacactacccaagtaccttcgattgagtcggtttctatagtctgtgagtttttggatgtgttccctgcagatcttcctggtatgccaccagatagggatattgacttctgtatcgatcttgaaccgggcacacgccccatttctatacccccttatagaatggctcccgtagagttaagagagttaaaggcccaacttcaagagttgttgagcaaaggtttcattagaccaagtgcatctccttggggtgctccgattttgtttgtgaagaagaaggatgggagttttagaatgtgcatagactacagacaactgaacaaggtaactattaagaacaagtatcctcttcctcgcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="-" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="109517" stop="106727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109217" g_stop="107026" g_length="2192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2192" r_length="2192" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="-" ref_id="SGN-U578865" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>2192</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109217" e_stop="107026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCAACGGCAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAACCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTAATGAAGTAGTAAGAGAAGGGGATGATGGGGAGAATGAACAAGTGCAGAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCAGGTTATCTGATCAGGGACAGGCCCCTCCAGTGTTTTCTGCACCAACATCTCCGGTTTCAGAGGTACAACATGCAGCAACTATGGCTCCTCGTATGGATGCCTTATTGGACATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCTGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACAGTCACGAGCTACTACACAAGATGAGTATAGTAGAGCGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTACAAGAGGTGGTAGACTTCGTGATAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCACGACATCGACATCAAAAAGGTTTCAAAAGGGAGGCGAGTTTAATGGTTCTTACTCTAGAGGACAACGTTGCGTAGGTTACTTAGTTCGACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGGCTCCAGAGAGTGTTATGGGTGTGGGGAGACTGGGCATATTAGGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCCGAGGTGATGGGTAAACTGGATCCACTACATCACAACATGGTAAGGGCAACGGACAGATGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCCGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTGTTTGGTGAATTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAAGTTGCGATTTTGGATTGTAATGCTAAAACGATGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCCTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTAAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTAGTATGCCACCAGATAGGGATATTGATTTTTGCATTGACCTTGAACCGGGTACTCTCCCCATTTCGATACCCCCTTATAGAATGGCTCCCGCGGATTTAAGACAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGTGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCATTGATG</genome_strand>
        <mrna_strand>AAGAACAGCGACAAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCGCCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCGGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCAGATTTCGGCCTTACAAATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCATCCCGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTAGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAAGGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTGGCGGTCGAGGAAATGGTGGTCACCAAAACGGCCGAGGTGATGGGAAAACTGGAGCCACTACATCACAACAAGGTAGGGGCAACAGACAGAAGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGAATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAACGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACATTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGCATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCTATAGTCTGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATCGATCTTGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGTAGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGTTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGATTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTAGAATGTGCATAGACTACAGACAACTGAACAAGGTAACTATTAAGAACAAGTATCCTCTTCCTCGCATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592109" ref_strand="-" ref_description="SGN-U592109 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=5e-59) Putative; ">
      <seq>ggaaaagggatgagttcttgancctatagcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="-" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="108852" stop="106816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108552" g_stop="108338" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108337" i_stop="107594" i_length="744">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107593" g_stop="107079" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="723" r_length="508" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="-" ref_id="SGN-U592109" ref_strand="-">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592109" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108552" e_stop="108338"/>
          <exon e_start="107593" e_stop="107079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTACAAGAGGTGGTAGACTTCGTGATAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCACGACATCGACATCAAAAAGGTTTCAAAAGGGAGGCGAGTTTAATGGTTCTTACTCTAGAGGACAACGTTGCGTAGGTTACTTAGTTCGACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGGCTCCAGAGAGTGTTATGGGTGTGGGGAGACTGGGCATATTAGGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCCGAGGTGATGGGTAAACTGGATCCACTACATCACAACATGGTAAGGGCAACGGACAGATGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCCGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTGTTTGGTGAATTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAAGTTGCGATTTTGGATTGTAATGCTAAAACGATGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCCTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTAAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTAGTATGCCACCAGATAGGGATATTGATTTTTGCATTGACCTTGAACCGGGTACTCTCCCCATTTCGATACCCCCTTATAGAATGGCTCCCGCGGATTTAAGACAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGTGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAG</genome_strand>
        <mrna_strand>GGAAAAGGGATGAGTTCTTGANCCTATAGCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591718" ref_strand="+" ref_description="SGN-U591718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-28) putative integrase [Solanum demissum]; ">
      <seq>gggatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="+" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="107199" stop="108123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107498" g_stop="107823" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="+" ref_id="SGN-U591718" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107498" e_stop="107823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTGTCCCAGGCTTGGCTAACGTCATCGTTTTAGCATTACAATCCAAAATCGCAACTTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCGGGATCAAACAATACAGAAGCCATGCAATCAC</genome_strand>
        <mrna_strand>GGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581303" ref_strand="+" ref_description="SGN-U581303 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-69) Polyprotein,; ">
      <seq>cacgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtctgggacaatttctcctaatatgtccaatctccccacatccataacattctctggagtcaatcataggcccctcggagaagtgttgaccggtctgaggtggtcccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctccctttcgaagcctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaagtccgggggatatacttctccataaacaaactagagaatgaggcccaagtcataggtggtgcctctattggttgacactcgatatgtgaccgccaccacattttggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcctgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcactgccctagtatcagatgggctaggtgctcgtcctcttcctctagaggacgtcctcccacgacctctaccacggccccttgccgctgttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="+" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="107410" stop="109516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107710" g_stop="109217" g_length="1508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1508" r_length="1508" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="+" ref_id="SGN-U581303" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>1508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107710" e_stop="109217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCGGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCATCTGTCCGTTGCCCTTACCATGTTGTGATGTAGTGGATCCAGTTTACCCATCACCTCGGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTTCTCCTAATATGCCCAGTCTCCCCACACCCATAACACTCTCTGGAGCCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTAAGTAACCTACGCAACGTTGTCCTCTAGAGTAAGAACCATTAAACTCGCCTCCCTTTTGAAACCTTTTTGATGTCGATGTCGTGGTGAAGTCATCTGGCTTCACTCCTTCCACCTCTATCACGAAGTCTACCACCTCTTGTAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGGCGAATCCGCTCTTGTGGACTGAAACATAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGCTCTACTATACTCATCTTGTGTAGTAGCTCGTGACTGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCAGATCATTTGTCATTATAGGCCCAGTAGTCAGACTTGGAAACGTGCCTATGTCCAATAAGGCATCCATACGAGGAGCCATAGTTGCTGCATGTTGTACCTCTGAAACCGGAGATGTTGGTGCAGAAAACACTGGAGGGGCCTGTCCCTGATCAGATAACCTGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTCTGCACTTGTTCATTCTCCCCATCATCCCCTTCTCTTACTACTTCATTAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGTTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGTTGCTCTT</genome_strand>
        <mrna_strand>CACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577296" ref_strand="+" ref_description="SGN-U577296 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-54) Polyprotein,; ">
      <seq>aagaacaacggtaagaggccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcagtgactcctccaccgactgaggagataataagagaaggggaggatggggaaactgaacaagtgcaaaacgaggaaatgccaccccaacctaccccagagatgatcaatcaggttctggcttatcttagcgggttgtctgatcagggccagacacccccagtgttttctgcaccagcacctcaggctccggaggtacaacatgcggctactatggctccccacatggatgttccattggaaataggcacgtttccacgtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcagaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtcaaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaggcaccacctatgacttggacctcattctctagcttttttatggagaagtatatcccccggactttgagggataggaaaagggatgagttcctgagcctagagcaaggtaggatgtcggttaatgcttatgaagctaagttccgtgcactatccagatatgccacccaactatgtttcagtccacaagagcggattcgccgttttgtgaaggggttgaggtcagagttgtggatttcagccttatagatagcggctactgcaaaatccttccaagaggtggtatatttcgtggtagaggtggaaggagtgaagccagatgacttcaccacgacatcgacatcaaagaggtttcgtaagggaggtgagtttaagggttcttactctagaggacaaggttccggaggttactcagttcgaccatttcaatcttcactacagaccgtagttgggggtccacctcagaccggtcaacacttctccgagagacctatgcttgactccagagagtgttatgggtgtggggagactgggcatattaagagaaattgtccaaaacagagttatagacccccaatggctagaggtagaggtggtcatggtagaggccgtcattctggaggccgtggtggtcgacccacgggtggtcaccaagacggccgaggtgatgggcaaactggagccactacatcacaacatggtaggggcaacagacagacgaacgatatggcccattgttacgctttccctgggcggtttgaagcggaggcatctgatgctgtcatcacaggtaatcttctggtttgtgattgcacggcttctgtattttttgatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="-" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="109517" stop="107493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109217" g_stop="107792" g_length="1426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1426" r_length="1426" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="-" ref_id="SGN-U577296" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>1426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109217" e_stop="107792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCAACGGCAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAACCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTAATGAAGTAGTAAGAGAAGGGGATGATGGGGAGAATGAACAAGTGCAGAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCAGGTTATCTGATCAGGGACAGGCCCCTCCAGTGTTTTCTGCACCAACATCTCCGGTTTCAGAGGTACAACATGCAGCAACTATGGCTCCTCGTATGGATGCCTTATTGGACATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCTGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACAGTCACGAGCTACTACACAAGATGAGTATAGTAGAGCGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTACAAGAGGTGGTAGACTTCGTGATAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCACGACATCGACATCAAAAAGGTTTCAAAAGGGAGGCGAGTTTAATGGTTCTTACTCTAGAGGACAACGTTGCGTAGGTTACTTAGTTCGACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGGCTCCAGAGAGTGTTATGGGTGTGGGGAGACTGGGCATATTAGGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCCGAGGTGATGGGTAAACTGGATCCACTACATCACAACATGGTAAGGGCAACGGACAGATGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCC</genome_strand>
        <mrna_strand>AAGAACAACGGTAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGATAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAACGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCACATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCAGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGACCTCATTCTCTAGCTTTTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAAGCTAAGTTCCGTGCACTATCCAGATATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGTGGATTTCAGCCTTATAGATAGCGGCTACTGCAAAATCCTTCCAAGAGGTGGTATATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCACGACATCGACATCAAAGAGGTTTCGTAAGGGAGGTGAGTTTAAGGGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTTCGACCATTTCAATCTTCACTACAGACCGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCCGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGGTGTGGGGAGACTGGGCATATTAAGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGCCGTGGTGGTCGACCCACGGGTGGTCACCAAGACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACAGACAGACGAACGATATGGCCCATTGTTACGCTTTCCCTGGGCGGTTTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCACGGCTTCTGTATTTTTTGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590682" ref_strand="+" ref_description="SGN-U590682 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=4e-28) Polyprotein,; ">
      <seq>ccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcggtgactcctccacctactgaagaagtaataagagaaggggaagatggggagaatgaacaagtgcaaaatgaggaattgccaccccagcctaccccagagatgataaatcaggtgctagcttatctgagtaggttgtctaatcaaggtcaagcacctccagtgtcttctgcaccaacacctccggtttcagaggtacaacatgcagccactatggctcctcgtatggatgcctcattagatataggcacgtttccaagtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggttcggtgttgagttcgtgagttatcaatttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcctcattttctagtttgnttatggagaagtatatcccccggactttgaggganaggaaaagggatgagtttttgagcctagagcaaggtannatgtcggtcaatgcatangangctaagtttcgtgcactatccnnatntgccactcaactttgtttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="-" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="109499" stop="108173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109199" g_stop="108447" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="-" ref_id="SGN-U590682" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109199" e_stop="108447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAACCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTAATGAAGTAGTAAGAGAAGGGGATGATGGGGAGAATGAACAAGTGCAGAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCAGGTTATCTGATCAGGGACAGGCCCCTCCAGTGTTTTCTGCACCAACATCTCCGGTTTCAGAGGTACAACATGCAGCAACTATGGCTCCTCGTATGGATGCCTTATTGGACATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCTGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACAGTCACGAGCTACTACACAAGATGAGTATAGTAGAGCGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTATGTTTCAG</genome_strand>
        <mrna_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCTACTGAAGAAGTAATAAGAGAAGGGGAAGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTAGCTTATCTGAGTAGGTTGTCTAATCAAGGTCAAGCACCTCCAGTGTCTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTAGATATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTCGGTGTTGAGTTCGTGAGTTATCAATTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTTTCTAGTTTGNTTATGGAGAAGTATATCCCCCGGACTTTGAGGGANAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTANNATGTCGGTCAATGCATANGANGCTAAGTTTCGTGCACTATCCNNATNTGCCACTCAACTTTGTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579412" ref_strand="+" ref_description="SGN-U579412 Tomato 200607#2 [6 ESTs aligned] ">
      <seq>gtcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtcctcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtctcgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagaatactcatagtttagtcgtttgatcgtagatgttcttgtgatgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctttatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtggctcgagggggggcccggtaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="-" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="110620" stop="108912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110320" g_stop="109269" g_length="1052"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1049" r_length="1049" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="-" ref_id="SGN-U579412" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>1052</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110320" e_stop="109269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAACGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAACTTGATGGTAATTGTTAACCATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTT-G-ATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATCCAGGGTGAGCTAATGCTTCTAGCTTGGAGTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCTTGGACTAGCTTCTTATGTATTTTTAACTTTTAGAATACTCTTAGTTTAGTCGTTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGAGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTTTATTTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGATATTATATTGAAATGTTAAGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTTGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTATTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCCTTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGTAGATTGTTAGAACTAGAGTAACAACTGCGCCAACACCAAC</genome_strand>
        <mrna_strand>GTCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCCTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTCGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCATAGTTTAGTCGTTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTTTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAATTCCATTC--T--TTC-TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592141" ref_strand="+" ref_description="SGN-U592141 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctggcactgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="+" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="109687" stop="110614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109987" g_stop="110315" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="+" ref_id="SGN-U592141" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109987" e_stop="110315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATATCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATGGTTAACAATTACCATCAAGTTCACACATGAGGACTCAAGCCTCGATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCGTTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATGTGTCGGTTC</genome_strand>
        <mrna_strand>CTGGCACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579979" ref_strand="+" ref_description="SGN-U579979 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|147774370|emb|CAN72395.1| (e_value=2e-88) hypothetical; (*ATH) AT2G32080.2 (e_value=1e-114) | Symbol: None | PUR alpha-1 protein, identical to PUR alpha-1 GI:5081612 from (Arabidopsis thaliana); contains Pfam profile: PF04845 PurA ssDNA and RNA-binding protein | chr2:13649314-13651243 REVERSE | Aliases: None; (*SWP) sp|Q9SKZ1|PUR_ARATH (e_value=8e-113) Transcription factor Pur-alpha 1 OS=Arabidopsis thaliana GN=PURA1; ">
      <seq>caagcggaactggtcaacgattatttccaactgaaattcctcttcttcatagaaccctaattcacacatttgcaatcgaatccccaattcttttccataatgccagctatatcattcatttctcactgattattttcttttgttcaatttttaagttgaagtgtgagtgatattgatggagggaaattcgagtggtggcggtggtggtggaaacgacgtagagttattgtgcaagacgttacaggtagaacacaagcttttctatttcgacctgaaggagaatccacgtggacgatacctgaaaatctcggagaaaacgtcggcaacaaggtctactataatagtaccattcaacggcatctcatggttcctcgatctcttcaattactatgtcaattcagatgaccaggatgtctttagcaaagaactccaacttgataccaaggcagattattatatacatatgtcgcttcagctcctatttatcttctccactgttttttaaaactttttatgattaacttctgttaaaggttgttttcttggttttttttttctgcacggcaggtgttttactttgatgtaggagagaataggcgagggcgctttctgaaggtctctgaagcatctgttagcaggaaccgtagtaccattattgttccagcaggaagtgcccgggatgagggatgggcagcatttaggaatattttggcagagattaacgaagcctcaaggctatttatttcgcccaatcagcagagtttggaaacctcagagcgtcttgggctttcagatgatgtaggagctggttttatatccagtcactcttctcaatctgctcccacagctgatttgactattgaacggaccattgatttgccagcagctgacgaagttagtgacgtgggggtctccaaagtaatcagggttgaccagaagaggttcttctttgatcttgggaataacaatcggggccatttcttacgaatatcggaggtagcaggttctgaccgctcttcaataattcttcccctttctggcctgaaacaattttatgacatggtgggtcactttgtagagataagcaaagatcgcctcgaaggaattacaggtgcaaatgttcggacaattgactccccacagagatgactggttgtctaaggcgtggagccatgtactgcagataatgggcagacgagtgttattcctatgttaattttctgcctggtcattgtgtgtttcaagttgaataaaatggtatcactgttataaactggaaatataaagtcaaatgtcaatcatcaataggaggggggaataagagaataagccattatgttaggtgaaggattatagcataaaatggcacactcgtatttaatttcctctttgcttttttaggtgtgatttaagcttcttctatgtgtgagaaactctccgctatggcttgggctaaacataatcctaggttgctgctaagtttggttattgaatatcacgaatattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="-" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="140157" stop="123701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139857" g_stop="139243" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139242" i_stop="125075" i_length="14168">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125074" g_stop="124934" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="756" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124933" i_stop="124843" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124842" g_stop="124603" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="996" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124602" i_stop="124514" i_length="89">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124513" g_stop="124001" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="997" r_stop="1509" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="-" ref_id="SGN-U579979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139857" e_stop="139243"/>
          <exon e_start="125074" e_stop="124934"/>
          <exon e_start="124842" e_stop="124603"/>
          <exon e_start="124513" e_stop="124001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCGGAACTGGTCAACGATTATTTCCAACTGAAATTCCTCTTCTTCATAGAACCCTAATTCACACATTTGCAATCGAATCCCCAATTCTTTTCCATAATGCCAGCTATATCATTCATTTCTCACTGATTATTTTCTTTTGTTCAATTTTTAAGTTGAAGTGTGAGTGATATTGATGGAGGGAAATTCGAGTGGTGGCGGTGGTGGTGGAAACGACGTAGAGTTATTGTGCAAGACGTTACAGGTAGAACACAAGCTTTTCTATTTCGACCTGAAGGAGAATCCACGTGGACGATACCTGAAAATCTCGGAGAAAACGTCGGCAACAAGGTCTACTATAATAGTACCATTCAACGGCATCTCATGGTTCCTCGATCTCTTCAATTACTATGTCAATTCAGATGACCAGGATGTCTTTAGCAAAGAACTCCAACTTGATACCAAGGCAGATTATTATATACATATGTCGCTTCAGCTCCTATTTATCTTCTCCACTGTTTTTTAAAACTTTTTATGATTAACTTCTGTTAAAGGTTGTTTTCTTGGTTTTTTTTTTCTGCACGGCAGGTGTTTTACTTTGATGTAGGAGAGAATAGGCGAGGGCGCTTTCTGAAGGTTATTCAACTTGACCTTGACTCTTTGCTTTTGCTCTGTTTTGATGCTAATATAAAGTATGTTTGCACCCTTAGTTTTCTTACACATTTCCATTGATATGGCTGTTTAGTCTAGTCTTGATTCGTGATCATTATTGAGAATTATGATTATTGGTACACATGTTAAATGGGGTAGTTTGCATATGAGAGTGTGTGATGTGGAAAATAATGCATTGCTTTGTGCATTGTTTTATGGGTGATCAATATACTAATTTGAGTTCATCCATAGATTTTTGTGTAAAGAAATTCAAAGGTCCTGTCAAGTATCAAATAACCATGGCTTGGGCTTGGTAATTCTGATAATTGGTTTCCGTATAAGCTATCTGGATTGCAACTGTGGTATTCAACATTTGTTACTCTATTCCTTTTACACCAATCTTGATGGAGTCTCTATTATTTGTATTTCCTTTACACCAACCTTGAAGGAAATTGCTATAATTTGGATTTCAATTAATCTCTTGTACAATATGTCCATGATCTAATATGATAAAGCATATGCCTTTCTCAGGGTTGGGTAGTAAATTGAATTTCTGTTCATGTTCTATGACCTGAATGGTCAGTGTATTAGGTAGTATGAACTTCTTTCTCTCTTTGTTATCACTCCTTAGTCATCCAATAGTTACAGTAGTAGTTATTTTTTTTAGTAGTAGTTATTTTCCTGTAATAGTGTAGTTTTTCATTCTAGTAATGTTAGGAATTATGTCATAGTTTCTAGGGGTAGTTATCCTGTAAGGGGTCATTTGGTTGGGAACTAGTTATCCTAACTATCCTGGAATTAGTTATCATGGGACAACTTATCTCACCATGTATATGGGATAACTTATCCGATCACTATGCTATAAATGGTGGGATAAGTTATCTCAAACAACACATCTAAATTTTATCCCAGGACTATTTTCTTATCCTAGAACTATTATGCTTATCCCTCACACCAAATGAGCCCCAAGTGTTGTATTTGAACTATCTATCTCAAGAAATATAAGTGGAAAAGTAATTTCAGCTTTTGAGTACTTTGACTCAATAGATTGCAGGGGCTCTCTGGATGAACCAACACCATAGGTTGTAGGAAGAAAATTTCAGCTTTTATCTTGTAGTGTCTCATAACTAGATGCATAACAAGGGACTAACGGTGGGAGTTATGAGCGACCAAATTCAACATCAACTAGCACAATTGGTGTACTTGTTCCAAGAAGAACGTTTAACCAATTTGGCCAGACATGAAATACTAAATGCTCGTTTGGATGCACTCGCAAAGGATTTAGAGAATTCTAAGGTCTATTTTGATTCAAATGAAACTGCAGGTCAAAATCGCGGTTAAAGGGAAAATAAAGTGGCGGGAGGGTTAGGATCAGAAGTAGAAGCCAATTTTTATCATTCCTCGACATACAAAGTTGTATTTCCCACGATTAATAGCCAAGAGGACCCTCTGGGATGGTTGAACAAATGTTAACACTTCTTTCGACACCAACAAACTCTTGAAGAAAAAGGTTGGGTTTTCTTCATTCTTTTTAAAAGGCAATGGTTAACTTTGTTTCTTCAACTAGAGACATATATGCCTCAACCATCTTCGGATGAATTCAAACGTCAATGTAATTGCACTTTAGGCCATCAATCAGAACTTAGAAATTCAGAGAATTGCTAAGATATGCTTGATCGGGTGTGTGGCAAATTACCAAGAAAATTTTGAGCAGTTAATTTCGTGGGCTGGTACACTCACTCGGTTGCAAAAAAATTGAACTTTATATCACTGGTTTTACTGATTATATAGCAATTGAGGTTGAGTTGCATATTCCTCCAGATTTGGTTATGGCGATGAGTTTTTCCATAATTTATGAACGTAGAGAACAACCCATCTGTTCGCAATCGGTAGATGCTTGCTAATCAAACACAACAAATTTCTCACCTTAATAACATGCCAAATTTGTGAAGAAACTGACCAAATCTAAAATGGAGGAAAGGCGACTTAAGGGACTTTGTTTCAATTGTGTTGAAACATTCACCCTATTAGGTTGTGGAGCCTGATTAATATATATAAGTGTACTATTTATTCTCCATTTATTTTCTGTAACAAAAAATACTCTGATTTATTAATATATATGTACCCCATCGCCGTGGAAGTTTACTCATAGGTATTACCACAAAATATTGGTTTCTCTCTTTATCTCTCTAGATCTCTCATCTCTTTCTCTCTAAAGTTCTTGTGTTATTTATTCATCAAGTGTGTGTGTGTGTGGATTCGATCCTAACAACTGGTATCAGAGCTAAGGAGATTCAACACGATCACTGAAGATGGATAGTTCGAAGCTTGGAATCGAGAAGTTTGATGGATCCGATTTTAGTTTCTGGAAGATGCAGATCGAAGATTATCTGTACCAGAAATATCTTCACAAACTGTTGACCGGGGTGAAGCCGGAATCCATGATGGAGGAGAAGTGGAAACTCAAGGATCGCCAGGCTCTACGGTTGATCCGGTTGACTTTGTCAAGAAACGTGGCGTTCAACATCGTGAAAGAGAAGACTACGTTCGGTTTGTTGAAGGCACTATCAAACATGTATGAAAAACCATCAGCGATGAACAAGGTATATTTGATGCGTAGATTGTTCAATTTACAGATGTCTGAGAATGGATCCGTTTCTGATCATATAAACGAGTTCAATATGATTGTGAGTCAACTCAATTCTGTGGATATTAATTTCGAAGATGAAATTAAGGCGTTGATTTTAATGTCATCTCTGCCCGAGTCTTGGGATACTGTTGTTGCTGCGATTAGCAGTTCCCGTGTATCTGAGAAACCGAAGTTTGATGAAATCCGTGATGTTGTTCTTAACGAAAGTATTCGCAAACGAGAAGTGGGAGATTCATCGGGCAGTGCTCTCAGCGTTGACCGAAGGGGGAGAAGTAAGACAAAATGCCAAAATCAACATGATCGATCAAAATCAAAGAATCGAGGAAAATCCCCGAACAGATCAAAAACGTGACTTGTTGGAACTGTGGAAAAAAAGGGCACTTTCAGACGAGTTGTACAAAGCCAAAGAAGAAACAGAATTAGAAATTTGGAGATGACAGTGATTCTGTAAATTCAGCGGAGGACATTGGGGATGCTCTAATCCTTAGTGTGAACAACCCGGTTGAATCATGAATTTTGGATTCTGGTGCATCTTTCCATTCGTCTCCAAGCAAGGAGTTGTTCCAAAATTTCAAATCTGAAAATTTTGGAAAGGTATATCTTGCTGACAATAAAACCTTAGAGATTGAAGGAAAGGGGGATGTTTGCATAAAGACCACCTCGGTAAACCAGTGGACATTGGAGGATGTCAGATATATTCCTGGGATCAAGAAAAATCTGATCTCTGTTGGTCAGTTGGATAGCACAGAATATGCAGCAGAGTTTGGAAAAGGTTCGTGGAAGATTGTGAAAGGTGCTATGGTAGTAGCTCATTGTACCAAATCTGGAACCTTGTACACCATTGTAGGGTGTATTAACATGCCGCTGTTGCTGAAGGTGCTTCCGGTTCATGTTTGTGGCACAACCGATTTGGACACATGAGTGCTAAAGGAATGAAGATGCTGGTTACAAAAGGAGCATTAGAGGGTCTGAAGTCTGTTGTTATAGGTCTTTGCGAGAGTTGTGTTATGGGCAAACAGAAAAGAATAAACTTCTCAAAGACTCCTAGAGAGCCAAAGAAAGTGCGGTTGGAAATGTTCCATACAGATGTTTGGGGACCATCTCCAGTATCATCACTTAGAGGATCCAGATTCTATGTTACCTTCATTGATGATTTCAGCAGGAAGGTATGGGTTTACTTCTTGAAGCATAAGTCAGATGTGTTTGCAACTTTCAAAAAGTGGAAAGCTGAAGTTGAGAATTAGATCGGTTTGAAAGTCAAATGCCTACGGTCTGACAATGGAGAAGAGTATGACAAATCAGAGTTCAAGGCATTCTGTGCAGCTGAGGAATCAGATTGATGAGAACAGTTCCTGGTAAGGTAAGGCAGAATGGAATTGCTGAGAGGATGAATACAACATTGAATGAGCATGCAAGGAGTATGAGGATACACTGTGGGCTGCCCAAAACACTTTGGGTGGATGCTGTGAGCACAACTGCATACTTGATCAACAGGGGACCATCAGTTCCTTTAGGGTTCAAGATTCCAGAGGAGGTGTGAACAGGAAAAGAACTCAAGTACTCACACTTTAGGACTTTTGGCTGCATTGCTTATGTTCATGTTGATCCAGAAAAGAGAGACAAGCTTGATGCCAAGGCTGTGAAGTGTTACTTCATAGGATATGGTTCTGATTTGCTTGGTTACAGGTTTTGGGATGACAAGAACAGAAAGATCCTGAGACATTGTGACGTGACATTTGATGAGTCTGTCCTGTACAAGGACAGAGAGCAGAAGGTTCTAGAGATTACAAAGCTAGTGGGAGTTGAGGTTGAGTTGGAGAAGAGTAACCCCAGAGATGTCGAAGCAGATACTCAACCAACTCCTACTTAAGAATCTGAAGTGGAGCAAGTTAGACCTGAGCAGGTGTTAAGGAGATCATCCAGATCCATCAAGGCACCAGATAGGTATTCACTTTCATTACACTATCTATTGCTGACTGATGAGGGGGAACCAGAGTCTTTTGATAAGGCCCTACAAGTGGAGGATTTGATCAAGTGGGAGCAAGCCATGGATGATGGGATGAGGTCACTTGAGAAGAACGACACATGGGTGTTGACTGAGTTACCTGCAGGGAAGAGAGTTTTGCTGAACAAGTGGGTGTTCAGAATCAAGACTGAACCAGATGACAAAAGAAGGTTCATGGCTCGTTTAGTGGTTAAAGGATATTCACAAAGGAAAGGTATTGATTATGCTGAAATATTTTCTCCTGTTGTGAAGTTAACCTCTATTCGAATTCTGTTGAGCATTGTTGCATCGGAGAATTTGCATCTAGAGCAAATAGATGTAAAAACAACATTTTTACATGGAGATCTGGACAAAGAGATCTATATACAACAACCGGAAGAATTTGTGGTTCCAGGCAAGGAACACATGGTGTGCAAGCTCACCAGGAGCTTGTATGGACTAAAGCAAGCACCAAGGCAGTGGTACAAGAAGTTTGACTCCTTAATGATCAAAAGTGCATTCTGCAAAGCTGAAAAAGATACTTGTTGTTACTTCAAGAAATACACTGATTCATATGTTTTTCTACTCTTGTATGTGGATGATATGTTGATTGCAGGATCTAGTATGAGAGAGATTATCAATCTGAAGACAAGGTTGTCTGCAGTGTTTGAGATGAAAGATTAGGGTCCAGCAAAACGAATTTTTGGGATGAAGATTTTTCGGAATAGATCTGCTGGCACTTTAAATCTATCTCAGGAGTTGTACATTGAGAAGGTGCTGAGCAGATTCAGGGTTAATGATGCTAAACCGAGGACTACTCCATTGGCAAATCACTTTAAATTGTCAAAGGAACAGTCACCCAAGACTACCGAGGAGCGTGATCATATGACACTTGTTCCATATGCTTCAACAGTTGGTAGTTTGATGTATGCTATGGTCTGCACTAGACCTGATATAGCACATGCAGTGGGAGTTGTTAGAAGGTACATAACGAACCCTGGGAAAGAACATTGGGAAGCTGTGAAGTGGCTTCTGAGATATTTGAGAGGTACATCCAGTACTTCACTTTGTTTTTGGCAAAAGCAAGGTGACTCTACAGGGTTTTGTGGATGCTGATCTTGGTAGGGATGTTGATTCGAGCAAGATTACATCCGGGTACATTTACATTATAGGTGGAACAATAGTGAGTTGGATGTCCAGGCTTCAGAAGTGTGTTTCTCTTCATCTACTGAAGTTGAGTATGTGGCAATAGCTGAAGCTGGGAAAAAGATGATATGGCTGGCAGATTATCTGGAGGAATTAGGCAAGAAGCAGAGCGAGAAGATTCTTTACTCAGATAGGCAGAGTGCCATACAGTTGGTGAAAAATCCAGTCTATCATTCGAGTACAAAACTCATTAGAAGGCGATACCATTTCACTCGCAGGGCAGTGGAGGGTGGTGATATGTGGTTGGAGAAGATAGAGGGTGCAAAGAACCCGACAGACATGTTGACAAAATGAGTTGATGTTGGGAAACTGGGGTTATGCCAAACCTCAGTTGGTCTTCTGTAGTTGTTGCTACAGATGTTGCGGTGCGGTAAAGATGTTGATGATGAAGAGATTTTCTTTGAGAATGTATTTTTTGGATGACTGAATCAGTCTCCAAGTGGGAGAATTGTTAGGTTTTGGAGCCTGATTAATATATATAGGTGTACTATTTATTCTCCATTTATTCTCTGTAACAAAAAATACTCTGATTTATTAATATATATATACCCCACCGCCGTGGAAGTTTACTCACGGGGTGTTACCACGAAATATTGGTTTCTCTCTCTAGATCTCTCATCTTTTTCTCTCTAAAGTTCTTGTGTTATTTGTTCATCAAGTGTGTGTGTGTGGATTCGATCCTAACAACTCACCCTAGGTCATCAATGCAAGAAATTATTTCATACTGAAGCACTTGAGGAAAAGCGCAATTTGAAGGAGGAGAGTAATGTTATCATCCCTTAGTCATCCAATAGTTACACAGTAGTTACTTATTTTTAGTAGTAGTTATTTTCCTGTAATAATGCAGTTTTTCATTCCAGTAATGTTAGGAAGTCCTGTCCTAGTTTCTAAGGATAGTTATCTTATAAGTGTTGTATTGACACTATAAGTTTGTCTCAAGAAATAGAAGCAGAAAGTAATTTCAGTTTTTGAGTACTTTAACTCAAGAGATCGCAAGTTCTCTCTTAACGAACAAACACCATTGGTCGTAGGAAGAAAACTTCAGATTTTATCTTGCATCGCCCCATAACTAGATCCATAATAGGGGAGCATAACACTCTCTCTACCTGCATATGAGTGAAACATTTTTTTTTTATGCAAATCAATCAACATACATAATGGACAAGCTTGGCTAACATAGAAACAAGATTGAAGCTCTTTTTACCAGGCTTATGTCTTTTTTTATTAGTTAAGGGCCGCATATAATAATAGAGGAACACTAAGAATGTTCTATAATTGTAAAGAAAACTTTAAAGACTGTAAGATGTAATCTTAAAATTTGTAGTTCTTCACATCAATTGACTCTTGTCAATTTCCGTAACGTATTGATTTTTTGAAACAAATTAGTTATAATTGACTCCTATCTATGCTGCTTGTTTTGTGTGCGACATTGTTTTGGAAAATCAGTGTCATGTTTTTGTGTCCATGTCTGTGGAAGCTCTGCACCTATACAAGTGGAGTATGAGGGAGATGAGAAACAAAGTCAAAGAGTTTAGGAAAGCTTTTTCTGGTTGCCAGGAAAGTAATCACAAGTATTGTCTAGGGAAGTAATTTTATTTTGCCTAGTTCCATCTTCTTATTTATGAGTCTGCTCTTCTACTTTGCCAACTAAATTACATTAAACCTCCAGTCTCTAAAATTAATTAAGGAATGTAGCTACTATCTGTGTCATCCAAACCTGAATAATGTAACTTTTTGCTGAAGATCCATTTTTCTGTTATGCAATATCTTGATCAGGATACTCCTGTGATGGATGTTGTATATCTTTTTCTCTTTCTCAACTACTAGCACTCATATCTGTTGGGAAACATTTAAAACAAGGTTACACTTTATGTACACTTGGAAGCTTTGAGTACTTTGTTATTCTGAGAAGTAAAAGAAACGGGAAAAAGTGTTATTGACATTCATATCTACATTATTACTCTGGGCCCTATTATAGTTATATTTTGCACAGTACAAAATCATTCTTTTCCATGTGAGACTATTCATTAATATTCTTTTTTTTTGAGTTAAGGTAACTTTGTATTCACAAAAAACTCATCAACTAAGGATGATGATGATTTACAACCCACGGACAGTGTGTGCACTAACCTCACTGAGACTACTCAACAAAAAAACTTTACAGGTTACCTATGAGTCAACTATGTCTACTATATCGCTACCATATCCTATTTATACTATTATACCAAAAATAAATCAAACTAAGCCATTGATCTCTAATATTCTAGTCCTTGGTCCCTTTGCCTTCATAACATCTTGATTTTGTATCCTTCCCCAATGTCCACAAGACACAAGCTACGATGGATCTCCAGCAGTCTTCACTGGCTCCTCTTCTGCTAATACCTTCCCACTTATTGAGTAATTCCATTGTAGACTTAGGCATTACTCAACATTCTCCAACGATACAAAGGTACATACTCCAGAGATTTGTAGTTGCTCTGCAATGAAGAAATAGACCGATAAATACCTCCTCAGTGGCCCACTGGCTTTGCAAACCATATTATCTTCAATAAACCTTCTTCACAAAGCTATATTATTTGTGCAAAACCTCCAAAGCCACTTTTGAAGTAAGCATGCATTTTGTATGCTTAGATTTTTAATGCCCATGCCCCCTTTATTTATCAGTGTCAGTGAATCCCACTTGACTAGATTATAACCTCTTTTCTCTTTATTTCCTTGCCATTAAAAGGACCTCCTTAATCTGTTAATCTTCTTCTCAATGCTAGCACTCCCCTCAAGTTGGTGCATATAAGTGATATTTTAGGGAGCTTGTTGCAGAGTAACTAAGACGTATTAACCAAACATGTTACTGAAGTAACTAAATTTGAGGACGAGCGAGGAACTTGTTAAAAATATTTGCAAACTGATCTGTCTCCATAAGTTACATAACTATCTCTCCAGCGAGTATTTACTCTCTGTAAAAATAATAGTCAGTCTGAATGTGCTAAGTCCTCTCATTACGAGATTTGACTCGATACAAAGGATTGCTTAATTATCACACCCATCTCATTGATTTCTTCAAATTTCAATTGTGTGAGCGGCTATTTGATCCAACTAGCTCGCAAGTTGCTACAACCATTGCTCGATATTCTTCTTCTATGCTATATTGATAACTTTTATGTATCATACTCTTCCACGACGCCAAATTACCTCTTACTAAAACCCAATATCCAAACATCTAGCGTTTATGAGGAGGTGATCTCGCCCAGCGTCCCTATATCCATTGATCTGATGGAGTGGCTTGCTAGGGTTTGGTTGGCGAATGGCAGGGGACCCTGTGGTGGTTTTGCTTTTTGCCCACCACTAATGGGAAGTGGAACAACACAAATCACTTCTGAGGGGTCACCGGAAAGACACACGCCGACCTTCTTTTCTGCCCCGAATGTTTTTCACTGTGGTTCTAGTAACATGTGAGACGTGAAGACCTGGAAAGACGTATTATTGAGATTAGTGTCATCAAAAGTAAAAAGCACAAAAAAACTCTAAGCTCAGTTGGGATTTAAGTGCAAAGTGCAAATAGAACGTGGGATTTGATGAAAAAAGGCGGAGAAAAAAATACAATATATATGTTAGTCCAAGATTAATAAAGCATGCATGACAATTATTTGAATAAAGAAATTGAAAATAATTACGCTGAAGTGAAATATCAATTGTTTAGTGTTGTCTCTTTAGAAGAGGTTCATTGGGCAAAAGGATGCCTTAGAACCTTGACGATAACACTAAAGTACTCATTAAGCGAGGTGAAACGCTCAACACGTTTTGAGCCTTGCTTCAGCGCTTAAGCGGGTCTTTGATAACACTGATTGAGATTTATTTACATTATTACACTTAGCCTAATCACAATTATATTCGACATGGTACACAATCCTTTTCCATGTGAGACAATATATACGTTTTTATTTTAACAATTATGACATGAGCTATGGCTTGATGTGAATGTGAAATTCCATTGGGGTGGGTGATCTGTATAGTGGAGCGCATTTCTGGCATAACTATACAGGGTATAAGGGGAAACCCTCTTGAGAATCATTTATTGCTTTTGATGCCAGGATTGAGGAACTTGTAGAACTGGTTGTTCATACCTATAAATTGTGTCTCTGTGACTTTGTCATGGTAGTAAAATTGAGGCACAAAGATAGCCTCTTGTGTGCACTTGAATGTAATCAATATAGAAGAATCAGTTGACTGCCTATAATATTCCCTGCAAAATGCAAACAAGCTGGCTAGATTTTTTAACGTTGATTACATCCTTAGTTTAATGGTGTTTTTTTGTGTTATCTGCTCGCTAAGATTGTTGATGGTAATATTATGCGGCGTCTACAATCTCTGAATTTACTATGATAATCACTAGTCAAAGATTTTTCTGATCTGAACCACTTGTTTTTTTTTTTTAGAAGCTGGTTGTTTAAAGAAAACTTCTAAACGACTTGTTTTTCACATAGCTGCATTCTTTTTTAACCTGCAACTTCATTGTGGCTTGTTTTGACTTCTGTGACCTTGGGGTAACCATCATCTTGACCTTAACCTTTGTATTCTCCCCTAACTCATCTAAAGCTGCATGGAGAACCTTGCCCCCATGCCCTTTTCTGCCACTTTCCTTCGATGTTTATTCATCACACAAAAATCTTGTAATCCTTCTCTGAGCCCTTCCGACCAGGAGCTCTGTATATTTAGTTACCAACTATTTCTTCCTTTGGCAAGATAATATTCCTCACAAATGCATGAGCCTTTCTCTATCTTATCTGTTTGTATGAATGAGTCTATCTCCGGCCATAACCTTGCTCTAAGGATTCTGGTGATTCAGATATATCCTCTTGCTTGATTTTCTTCCTTCTAATTTCCTACGGAATTTTGTTACGGGTTTGACTTTCATTATTGAAACAGCATATGACATAATCATATGTCTTACATTTGGCTTTATGAATAGTGAGTAATTTCTGAAATTAAAGAAATGTTAAGAACTCTAATACTTTAATATACCATTTAAACATTAGGAAAGAAATTAATTGTCAGACTCCTAAATTTTCAATGGAACTTTATCTATCCAAAAAAGAGAGGAAAGGAAAACAGAATATCTAGAACCTTTATGTCAGCTTAATAAGGATCTTCTTCAAAATCATATCAAAGATCCTAACAGAGAGACTCAACCAAGTCCCGCAGATGCTAGTGGATGATCAACAAATAGCCTTCGTAAAGGGCAGACAAATTATGGATGCTATTCTAGTTGGTAATAAAAAGTGTGTATGTGAGATACAGGTCCAAAGTCCCAGGAATTCTATGCAAGCTTGAGATAGAGAAAACTTACGGAGTATGGGGCTCGGCACCTAGATAAATTGGATGAGGTTTTGTATGTCCACAGTGAAGTTATCTGTTTAGATCAATGGTTCACCATCTGGCTTCTTTTCCTCTGAGAAAAATGATTGAGATGAGCAGATCGTATCTCCTTTTCTCTTCATTCTTGCTATGGGAGATTTAAGTGATATTGTTAGCACCCTTTTAGTCTACCAATAATTTTATGCATAGAAAATTTAATCAGAAAGTTTATTTAATCAACAGCTATTAATTATGTTATTTCTCATTAGTAGTAGTAAGAAGTTATTTTGTTGTTATTAGGTGGATGGTTAATCACCAATGTTGTATTAAGCTATTTGAATTAATGGAAAGATAAGCAAAATATTTTTAAGTTTTTGTGTACTTCAAACTCAAGAGATTGTAGGCTCCCTTAAAGAGCCAGCACCATAAGTCGTAGAAAGAAAACATTTGATTTCATTGCATTGCCTGATAAGTAGATCCATATGAAGGACCATAACAACTTAGTATCTGAGACTGGATTTATGGGAGATATCTTATCCAGCAACAACTAGCACGATAGTTGACTTTGTTCCAAAAAGAACTTTTAACCAATTGAGCAAGGCATGAAGCCATAAATAGTCACTTGGATGCAATAACGAAGGATTTATCAAATTCAAAGGCAGATGTTAAGGTAATTGAAAATGACAGTCACAATCGAGGTTGGAAAGGTAAAGTAGTGGTTGCAGTTTCAGGGGAACTCCATGAATTCCTAAATATACAAAGTTAGATTTTCCATAATTTCGTGGCCACAAAGATCTCTCTTAGTCTACCAACAGTTTTATGCATGAAATTCTAATCAGAAAGTTGATTAAATCAACAATTATTAATAATTTTCTCATATTTTCTTGTCGCAGTTGTTTCCTTTGTAGCAATTATTAGCAGTAAGGAAGTTATTCCTCCAATTTCTCATTTCAGTTGTAGTAGGAAATTATTTCATTGTTGTAATTAAGTTAATTGAATTCTATGGAAAGCTTTATAAACAAAAAATTATATAGTTATTGAGTACTTCAAACTCTAGAGTTTGCAGGTTCTCTCTAAACGAACCAACACCATAGGTTGTAGGAAGAAAATATTTGATTTCAAATTGCAGAGCCCCATAACTACATCTATATTAGGGGACCATAACAAAGATGTTAAAGATTCCCTTTGGTAGCTACGAGTAAGTCCATGAAAATCTGGAACTGTGGAGGAAAAATGTGAGAAGAAGTTGGTTAATTCATGAAGTCAATACTCATCCTTAGGTGTTCTTGAGGCCATGCCAACCTATATGATGTCCCTCTTTCCCATCCCCAGGTAGATCATTAAGAAGTTGGATGATATTGGAAGGAAGTTCGTTCCTATGGCAAGGTAATGCTGAAGGTAAGAAGAAGTATGAGGGGGGGTGGGGGGGGGGGTTAGGGAATTATGAATTTGAAACCACAAAACTAAAGCCTTCTGTTAAGGGCTATGGAGACTGGAAACAGATTATCAGGGATTATGGAAGGAAATCATCATTGCAAGATATGAAAGGAAAGGACCATGGACCACTAAGGAAGTTAAAATTCCTTATTGGGTGGGTCTATTGAGAACTATTAGACTTTAGTGGCCAAAAATATGGGGTTACTTTGTTATCAATGTGGGAAATGGTAGAAAGATCTTGGTATGGGTGAGACAAACACCTCTGAGCAACAGTTCCTATACATCTGTAACCTTATCAACATAAACTGGCTTCAATTTTTGAAGTCAGAAATGCACAAGGCTGGAATCTGACCTTCAAAAGGTGCTCAATCATGATTGGTAAGTGGAGAGAATGACTCAATGCTACGATACCCTGGATCAAGTCAGGAGCCTTACCTGTGAGGAAGATGGACAAAGATGGCAAGTTCAAGGTGAAATCAGCCTACAAGTTATAGGATACCTCAACTCAAAGCAAGGAATTATGGCCTAGGAAGATGATCTGGAAAGAGAAGAAACCACAAAAGGGTGACCTGCTTCACTTGGCTATTTGCAAGACAAACAGTTTTGACTAAGGACAACTTGATGAAAAGCAGAAGAGAATTATGCTCCAGTTGCTTGGACAAATTATAAACTATTTTTTCTTGGATTGTAAAGTGACTAAGAAACTATGACTGTGATTCATTAGCCTGAGGGGTATTGAATGGATGATGCCAAGGAATAGCGCAGAATTTCTAACATGTTGGAAAAGAGATGGAAGTCAGTCGGAACACAAGGAAATGTGAAAAGATTGTTCATGTCTGCATCTGGTGGACAATATGGAGGGAGAAAAATCAGAGATTTTTTGGGAACAAGAGCATTCCCTTCAAAGCCTAAAAATGAACTGTTTAGGGACCTTTTACTTTTGGTGTATCCATACTGTACCTAAGGATCTGGGGGACATTTTACCCTAATTTTTGATAGCTTCTGAGGCAGAAAGGTGATGGATCTCTTTTTTTTTTCCAAATGGGCTCTCTCTTCACTTTTTTATGTAATTACTACAGAAGTACACTATTGGTGTATTTCTTTCTGTTTATAATACCAGTTAACTTTCTTTAAATGAAAATGGTGAAACCTTTCTGGAACTAACTCCAATTTCTGGTACATCTTTAAGACCCACCTTGAAACCAAACCCACTTAGGAGTATTGTATGGTTTCTTAAAAGCTACTGAGATACCTACGATTACAAATTCTTTTAAAATGCTAAAAAAATGGACAGTTAAGAAATCATAAGACAAACGGAATCAAGAAGATAAGAAATATCAGATCAATTGATTCTTTGACTAGCCATGACGTTATCAACTGTCATCTTAGTGTATCTATATATAGACTAGAAGAAGATTAGCCGCAGTTTGATTACAAAACAAGGTTTTATGAGTCTCTCTAATGGGGACTCTTTTGCAGCCCTAGATTTTACACTCCTATCGGTTAACATAGTAATGTATGCAGGTCTCTGAAGCATCTGTTAGCAGGAACCGTAGTACCATTATTGTTCCAGCAGGAAGTGCCCGGGATGAGGGATGGGCAGCATTTAGGAATATTTTGGCAGAGATTAACGAAGCCTCAAGGCTATTTATTTCGCCCAATCAGGTAATTTTACAGTCTCTGCCTTTTTGTGTCCTTTAAGGTGTCTCAAAATAATAGCTGCATTGCTCTCTTGTTTGAAAATGCATGAAAGCAGCAGAGTTTGGAAACCTCAGAGCGTCTTGGGCTTTCAGATGATGTAGGAGCTGGTTTTATATCCAGTCACTCTTCTCAATCTGCTCCCACAGCTGATTTGACTATTGAACGGACCATTGATTTGCCAGCAGCTGACGAAGTTAGTGACGTGGGGGTCTCCAAAGTAATCAGGGTTGACCAGAAGAGGTTCTTCTTTGATCTTGGGAATAACAATCGGGGCCATTTCTTACGAATATCGGAGGTTTGGCTTCTTGATGACCTTCATATAATTTAAGCATTCTAATTTTGGTTATCTGTTTATCATATTTATATTTTGACTGTAACTTGCAGGTAGCAGGTTCTGACCGCTCTTCAATAATTCTTCCCCTTTCTGGCCTGAAACAATTTTATGACATGGTGGGTCACTTTGTAGAGATAAGCAAAGATCGCCTCGAAGGAATTACAGGTGCAAATGTTCGGACAATTGACTCCCCACAGAGATGACTGGTTGTCTAAGGCGTGGAGCCATGTACTGCAGATAATGGGCAGACGAGTGTTATTCCTATGTTAATTTTCTGCCTGGTCATTGTGTGTTTCAAGTTGAATAAAATGGTATCACTGTTATAAACTGGAAATATAAAGTCAAATGTCAATCATCAATAGGAGGGGGGAATAAGAGAATAAGCCATTATGTTAGGTGAAGGATTATAGCATAAAATGGCACACTCGTATTTAATTTCCTCTTTGCTTTTTTAGGTGTGATTTAAGCTTCTTCTATGTGTGAGAAACTCTCCGCTATGGCTTGGGCTAAACATAATCCTAGGTTGCTGCTAAGTTTGGTTATTGAATATCACGAATATTTTG</genome_strand>
        <mrna_strand>CAAGCGGAACTGGTCAACGATTATTTCCAACTGAAATTCCTCTTCTTCATAGAACCCTAATTCACACATTTGCAATCGAATCCCCAATTCTTTTCCATAATGCCAGCTATATCATTCATTTCTCACTGATTATTTTCTTTTGTTCAATTTTTAAGTTGAAGTGTGAGTGATATTGATGGAGGGAAATTCGAGTGGTGGCGGTGGTGGTGGAAACGACGTAGAGTTATTGTGCAAGACGTTACAGGTAGAACACAAGCTTTTCTATTTCGACCTGAAGGAGAATCCACGTGGACGATACCTGAAAATCTCGGAGAAAACGTCGGCAACAAGGTCTACTATAATAGTACCATTCAACGGCATCTCATGGTTCCTCGATCTCTTCAATTACTATGTCAATTCAGATGACCAGGATGTCTTTAGCAAAGAACTCCAACTTGATACCAAGGCAGATTATTATATACATATGTCGCTTCAGCTCCTATTTATCTTCTCCACTGTTTTTTAAAACTTTTTATGATTAACTTCTGTTAAAGGTTGTTTTCTTGGTTTTTTTTTTCTGCACGGCAGGTGTTTTACTTTGATGTAGGAGAGAATAGGCGAGGGCGCTTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTGAAGCATCTGTTAGCAGGAACCGTAGTACCATTATTGTTCCAGCAGGAAGTGCCCGGGATGAGGGATGGGCAGCATTTAGGAATATTTTGGCAGAGATTAACGAAGCCTCAAGGCTATTTATTTCGCCCAATCAG...........................................................................................CAGAGTTTGGAAACCTCAGAGCGTCTTGGGCTTTCAGATGATGTAGGAGCTGGTTTTATATCCAGTCACTCTTCTCAATCTGCTCCCACAGCTGATTTGACTATTGAACGGACCATTGATTTGCCAGCAGCTGACGAAGTTAGTGACGTGGGGGTCTCCAAAGTAATCAGGGTTGACCAGAAGAGGTTCTTCTTTGATCTTGGGAATAACAATCGGGGCCATTTCTTACGAATATCGGAG.........................................................................................GTAGCAGGTTCTGACCGCTCTTCAATAATTCTTCCCCTTTCTGGCCTGAAACAATTTTATGACATGGTGGGTCACTTTGTAGAGATAAGCAAAGATCGCCTCGAAGGAATTACAGGTGCAAATGTTCGGACAATTGACTCCCCACAGAGATGACTGGTTGTCTAAGGCGTGGAGCCATGTACTGCAGATAATGGGCAGACGAGTGTTATTCCTATGTTAATTTTCTGCCTGGTCATTGTGTGTTTCAAGTTGAATAAAATGGTATCACTGTTATAAACTGGAAATATAAAGTCAAATGTCAATCATCAATAGGAGGGGGGAATAAGAGAATAAGCCATTATGTTAGGTGAAGGATTATAGCATAAAATGGCACACTCGTATTTAATTTCCTCTTTGCTTTTTTAGGTGTGATTTAAGCTTCTTCTATGTGTGAGAAACTCTCCGCTATGGCTTGGGCTAAACATAATCCTAGGTTGCTGCTAAGTTTGGTTATTGAATATCACGAATATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594060" ref_strand="+" ref_description="SGN-U594060 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147778480|emb|CAN69431.1| (e_value=2e-91) hypothetical; (*ATH) ATMG00710.1 (e_value=1e-17) |; (*SWP) sp|P10978|POLX_TOBAC (e_value=1e-57) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>gctttctggtaaggcaagggagaatggaattgctgagaggatgaacagaacattgaatgagcgtgcaaggagtatgaggatacactgtgggctgcccaaaacactttgggcggatgctgtgagcaccgctgcatacttgatcaacaggggaccatcagttcctctagggttcaagattccaaaggaggtgtggacaggaaaagaactcaagtactcacacttgaggacttttggttgcactgcttatgttcatgttgatccagaaaagagagacaagcttgatgctaaggctgtgaagtgttacttcataggatatggttctgatttgtttggttacaggttttgggatgacaagaacagaaagatcctgagacattgtgacgtgacatttgatgagtctgtcctgtacaaggacatagagcagaaggttctagagattacaaagcaagtgggagttgaggttgagttgaagaagagtaaccccagagatgtcaaagcagatactcaaccaactcctactaaagaatctgaagtggagcaagttacacctgagcaggttttaaggagatcatccagatccatcagggcaccagataggtattcaccttcattacactatctattgctgactgatgaagggaaaccaaagtcttttgatgaggccctacaggtgcaggattcgatcaagtgggagcaagtcatggatgatgagatgaggtcacttgagaagaacaacacatgggtgttgactgagctacctgtagggaagagagctttgctgaacaagtgggtgtacagaaatcagactgaaccagatggaaaaaaaaggttcaaggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="-" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="135528" stop="134092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135230" g_stop="134392" g_length="839"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="839" r_length="839" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="-" ref_id="SGN-U594060" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135230" e_stop="134392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCTGGTAAGGTAAGGCAGAATGGAATTGCTGAGAGGATGAATACAACATTGAATGAGCATGCAAGGAGTATGAGGATACACTGTGGGCTGCCCAAAACACTTTGGGTGGATGCTGTGAGCACAACTGCATACTTGATCAACAGGGGACCATCAGTTCCTTTAGGGTTCAAGATTCCAGAGGAGGTGTGAACAGGAAAAGAACTCAAGTACTCACACTTTAGGACTTTTGGCTGCATTGCTTATGTTCATGTTGATCCAGAAAAGAGAGACAAGCTTGATGCCAAGGCTGTGAAGTGTTACTTCATAGGATATGGTTCTGATTTGCTTGGTTACAGGTTTTGGGATGACAAGAACAGAAAGATCCTGAGACATTGTGACGTGACATTTGATGAGTCTGTCCTGTACAAGGACAGAGAGCAGAAGGTTCTAGAGATTACAAAGCTAGTGGGAGTTGAGGTTGAGTTGGAGAAGAGTAACCCCAGAGATGTCGAAGCAGATACTCAACCAACTCCTACTTAAGAATCTGAAGTGGAGCAAGTTAGACCTGAGCAGGTGTTAAGGAGATCATCCAGATCCATCAAGGCACCAGATAGGTATTCACTTTCATTACACTATCTATTGCTGACTGATGAGGGGGAACCAGAGTCTTTTGATAAGGCCCTACAAGTGGAGGATTTGATCAAGTGGGAGCAAGCCATGGATGATGGGATGAGGTCACTTGAGAAGAACGACACATGGGTGTTGACTGAGTTACCTGCAGGGAAGAGAGTTTTGCTGAACAAGTGGGTGTTCAGAATCAAGACTGAACCAGATGACAAAAGAAGGTTCATGGCTC</genome_strand>
        <mrna_strand>GCTTTCTGGTAAGGCAAGGGAGAATGGAATTGCTGAGAGGATGAACAGAACATTGAATGAGCGTGCAAGGAGTATGAGGATACACTGTGGGCTGCCCAAAACACTTTGGGCGGATGCTGTGAGCACCGCTGCATACTTGATCAACAGGGGACCATCAGTTCCTCTAGGGTTCAAGATTCCAAAGGAGGTGTGGACAGGAAAAGAACTCAAGTACTCACACTTGAGGACTTTTGGTTGCACTGCTTATGTTCATGTTGATCCAGAAAAGAGAGACAAGCTTGATGCTAAGGCTGTGAAGTGTTACTTCATAGGATATGGTTCTGATTTGTTTGGTTACAGGTTTTGGGATGACAAGAACAGAAAGATCCTGAGACATTGTGACGTGACATTTGATGAGTCTGTCCTGTACAAGGACATAGAGCAGAAGGTTCTAGAGATTACAAAGCAAGTGGGAGTTGAGGTTGAGTTGAAGAAGAGTAACCCCAGAGATGTCAAAGCAGATACTCAACCAACTCCTACTAAAGAATCTGAAGTGGAGCAAGTTACACCTGAGCAGGTTTTAAGGAGATCATCCAGATCCATCAGGGCACCAGATAGGTATTCACCTTCATTACACTATCTATTGCTGACTGATGAAGGGAAACCAAAGTCTTTTGATGAGGCCCTACAGGTGCAGGATTCGATCAAGTGGGAGCAAGTCATGGATGATGAGATGAGGTCACTTGAGAAGAACAACACATGGGTGTTGACTGAGCTACCTGTAGGGAAGAGAGCTTTGCTGAACAAGTGGGTGTACAGAAATCAGACTGAACCAGATGGAAAAAAAAGGTTCAAGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579412" ref_strand="+" ref_description="SGN-U579412 Tomato 200607#2 [6 ESTs aligned] ">
      <seq>gtcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtcctcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtctcgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagaatactcatagtttagtcgtttgatcgtagatgttcttgtgatgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctttatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtggctcgagggggggcccggtaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="+" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="29616" stop="146549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145145" g_stop="146198" g_length="1054"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1049" r_length="1049" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="+" ref_id="SGN-U579412" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>1054</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145145" e_stop="146198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATTTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGAATTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTTAGTACTCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGGGTGCAGCAAACGTGTCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGTTCCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGGTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTT-GGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTCTTTATTAATGAG-TTAAGTCTTCCGCATTACTTTCTGTTGTTATTACATTGAAATGTTAAGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAATGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGATATAAGACTTTAGGAAAAATTTCACTCTTTCATTCTTTCCTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGTGGATGGTTAGAACTAGAGCAACGACTGCGCCAACACTAAC</genome_strand>
        <mrna_strand>GTCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCCTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTCGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCATAGTTTAGTCGTTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTT-TAT-TTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGG-TTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGG-AAAATTCCATTCTTTC-TTC--T--TTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592141" ref_strand="+" ref_description="SGN-U592141 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctggcactgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="-" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="145775" stop="79118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145478" g_stop="145150" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="-" ref_id="SGN-U592141" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145478" e_stop="145150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTACTAAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAATTCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAAATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATGTGTCGGTTC</genome_strand>
        <mrna_strand>CTGGCACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590682" ref_strand="+" ref_description="SGN-U590682 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=4e-28) Polyprotein,; ">
      <seq>ccgtggtagaggtcgtgggaggacgtcctctaggggaagaggacgagcacctagcccatctgatactagggcggtgactcctccacctactgaagaagtaataagagaaggggaagatggggagaatgaacaagtgcaaaatgaggaattgccaccccagcctaccccagagatgataaatcaggtgctagcttatctgagtaggttgtctaatcaaggtcaagcacctccagtgtcttctgcaccaacacctccggtttcagaggtacaacatgcagccactatggctcctcgtatggatgcctcattagatataggcacgtttccaagtctgactactgggcctataatgacaaatgatcagcatgaacttttcagtaagttcttgaaattgaaacctccagtcttcaagggtgcggaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggttcggtgttgagttcgtgagttatcaatttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcctcattttctagtttgnttatggagaagtatatcccccggactttgaggganaggaaaagggatgagtttttgagcctagagcaaggtannatgtcggtcaatgcatangangctaagtttcgtgcactatccnnatntgccactcaactttgtttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="+" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="145968" stop="147320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146268" g_stop="147020" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="+" ref_id="SGN-U590682" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146268" e_stop="147020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGGAAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAACACCTAGCCCATCTAATACTAGGGCAGTGACACCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAAGATCAAGCACCTCCAGTGTTTTCTGCGCCAACACCTCCGGTTTCAGAAGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGACATAGGCACATTTCCACGTTTGACTACTGGGCCTATAATGACAAATGATCAGCATGAAATTTTCAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTTAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGATTTGGGCCTCATTCTCTAGTTTTTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCAGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAG</genome_strand>
        <mrna_strand>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCTACTGAAGAAGTAATAAGAGAAGGGGAAGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTAGCTTATCTGAGTAGGTTGTCTAATCAAGGTCAAGCACCTCCAGTGTCTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTAGATATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTCGGTGTTGAGTTCGTGAGTTATCAATTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTTTCTAGTTTGNTTATGGAGAAGTATATCCCCCGGACTTTGAGGGANAGGAAAAGGGATGAGTTTTTGAGCCTAGAGCAAGGTANNATGTCGGTCAATGCATANGANGCTAAGTTTCGTGCACTATCCNNATNTGCCACTCAACTTTGTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579265" ref_strand="+" ref_description="SGN-U579265 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|86371679|gb|ABC94893.1| (e_value=8e-76) polyprotein; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-38) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>ccgtgggaggacgtcctcaagaagaagaggacaaacacctagcccatttgatgctagggcggtgactcctccaccgactgaggaagtagtaagagagggtgaggaaggggagaatgaacaagtgcaaaatgaggaattgccaccccaacctaccccagagatgatcaatcaggttctcgcttatcttagtgggttgtctgattagggtcaggcacctctagtgttttctacaccagcacctcagggtccgaaggtacaacatgcggctattgtggctccccgcatggatgccttatcggacataggcacgtttccacatctgattactgggcctataatgataaatgatcagcgtgaaattttcagtaagttcttaaaatttaaacctccagtcttcaagggtgctgaatctgaggatgcttacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagttcgtgagttatgagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacctatgacttgggcatcattctctagcttgtttatggagaagtatatccccccaactttgagggataggaaaagagatgagttcttgagcctagagcaaggtaggatgtcggttactgcatatgaggctaagtttcgtgcattatcaaggtatgccacccaactttgtttcagtccacaagagcggattcgccgttttgtgaaggggttgagatcagagttgcggatttcagccttacaggtagcggctacagcgaaatcctttcaagaagtggtggacttcgtgatagaggtagagggagtgaaaagcccaacttcaagagttgttgagcaaaggcttcattagaccaagtgcatctccttggggtgctccagttttgtttgtgaagaagaaggatgggagttttcggatgtgcatagactaccggcagttgaacaaggtaatcataaagaacaagtatcctcttcctcgcattgatgacttgttcgatcagttacaaggtgcttgtgtcttcactaagattgacttgagatccggttgtcatcaattgaaaatacgggcaacggatgtgccaaagactgcttttagaaccaggtatgggcattacgaatttgtagtgatgtcttttggtcttacgaatgcccctgctgcgttcatgagtttgatgaacgggattttaagccatatttggatctctttgtgatcgtatttattgatgatatactgatatactctaaaagtaaggaggaacatgaggagcatttgagaatggtattggaaatgttgagggagaaaaagctttatgccaagttctctaagtgttagttttggctagatgcagtgtccttcttggggcacgtggtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="+" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="30849" stop="148812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146280" g_stop="147152" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="873" r_length="873" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="147153" i_stop="147950" i_length="798">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="147951" g_stop="148512" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="1436" r_length="563" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="+" ref_id="SGN-U579265" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>1435</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146280" e_stop="147152"/>
          <exon e_start="147951" e_stop="148512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAACACCTAGCCCATCTAATACTAGGGCAGTGACACCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAAGATCAAGCACCTCCAGTGTTTTCTGCGCCAACACCTCCGGTTTCAGAAGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGACATAGGCACATTTCCACGTTTGACTACTGGGCCTATAATGACAAATGATCAGCATGAAATTTTCAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTTAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGATTTGGGCCTCATTCTCTAGTTTTTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCAGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCACCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTTGGCCTTATAGATAGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACATCGACATCAAAAAGGTTTCGAAAGGAAGGTGAGTTTAATGGTTCTTACACTAAAGGACAGGGTTCGGGAAGTTATGCAGTTCGACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGAAATATTAGGAGCAATTGTCCCGGACCAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGATGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAAAAATGGATGATTTTGATGTTATTCTGGGTATGACTTGGCTTTCGCCGCAATTTGCAATCTTGGATTGTAATGCTAAAACAGTGATGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTACGTATCATCTCTTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGCTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCAGTTTCAGTAGTTCATGAGTTTCTGGATGTGTTCCCTGCAGATCTTCTTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGGATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGCAGTTTTCGAATGTGCATAGACTACAGACAACTGAATAAGGTAACCATAAAGAACAAGTACCCTCTTCCCCGCATTGATGACTTGTTCGATTAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGGCATTATGAATTTGTAGTGATGTCCTTTGGTCTTACGAATGCCCCTGCTGCG-TGA-GAGCTTGATGAACGGGATTTTTAAGCCATATTTGGACCTCTTCGTGATCGTATTTATCGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTAAGAATGGTATTGGAAATGTTAAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGTTTTCTA</genome_strand>
        <mrna_strand>CCGTGGGAGGACGTCCTCAAGAAGAAGAGGACAAACACCTAGCCCATTTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATTAGGGTCAGGCACCTCTAGTGTTTTCTACACCAGCACCTCAGGGTCCGAAGGTACAACATGCGGCTATTGTGGCTCCCCGCATGGATGCCTTATCGGACATAGGCACGTTTCCACATCTGATTACTGGGCCTATAATGATAAATGATCAGCGTGAAATTTTCAGTAAGTTCTTAAAATTTAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATGAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCCAACTTTGAGGGATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCCTTTCAAGAAGTGGTGGACTTCGTGATAGAGGTAGAGGGAGTGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAGTTGAACAAGGTAATCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCACTAAGATTGACTTGAGATCCGGTTGTCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTAGAACCAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGTTTGATGAACGGGA-TTTTAAGCCATATTTGGATCTCTTTGTGATCGTATTTATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTTAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592109" ref_strand="-" ref_description="SGN-U592109 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=5e-59) Putative; ">
      <seq>ggaaaagggatgagttcttgancctatagcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="+" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="31483" stop="148371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146915" g_stop="147129" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="147130" i_stop="147556" i_length="427">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="147557" g_stop="148071" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="723" r_length="508" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="+" ref_id="SGN-U592109" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592109" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="146915" e_stop="147129"/>
          <exon e_start="147557" e_stop="148071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCAGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCACCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTTGGCCTTATAGATAGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACATCGACATCAAAAAGGTTTCGAAAGGAAGGTGAGTTTAATGGTTCTTACACTAAAGGACAGGGTTCGGGAAGTTATGCAGTTCGACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGAAATATTAGGAGCAATTGTCCCGGACCAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGATGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAAAAATGGATGATTTTGATGTTATTCTGGGTATGACTTGGCTTTCGCCGCAATTTGCAATCTTGGATTGTAATGCTAAAACAGTGATGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTACGTATCATCTCTTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGCTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCAGTTTCAGTAGTTCATGAGTTTCTGGATGTGTTCCCTGCAGATCTTCTTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGGATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGCAGTTTTCGAATGTGCATAGACTACAG</genome_strand>
        <mrna_strand>GGAAAAGGGATGAGTTCTTGANCCTATAGCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579150" ref_strand="+" ref_description="SGN-U579150 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=9e-121) Polyprotein,; (*ATH) ATMG00860.1 (e_value=3e-15) | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158; (*SWP) sp|Q99315|YG31B_YEAST (e_value=3e-49) Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G; ">
      <seq>gcggccgctctatattagntggacccgcgggctgcaggaattcggcacgaggagaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagactttgctcaaaaactcttgaaagtgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtgcccgtttcaagatcgaagcagaagtcaatatccctttctggtggcataccggggagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="-" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="148945" stop="147576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="148641" g_stop="147831" g_length="811"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="865" r_length="813" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="-" ref_id="SGN-U579150" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="148641" e_stop="147831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAATACAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAAACACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTTAACATTTCCAATACCATTCTTAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCGATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTC-T-CACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCATAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTCATCAATGCGGGGAAGAGGGTACTTGTTCTTTATGGTTACCTTATTCAGTTGTCTGTAGTCTATGCACATTCGAAAACTGCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATCCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAAGAAGATCTG</genome_strand>
        <mrna_strand>AGAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAAGTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTGCCCGTTTCAAGATCGAAGCAGAAGTCAATATCCCTTTCTGGTGGCATACCGGGGAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="-" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="150206" stop="149113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="149906" g_stop="149413" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="-" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="149906" e_stop="149413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATTCTGCATGCAATGTTTTCCAAAACTTAGAAGTAAATTGTGTACCTCTATCTGATATGATGGATAGTGGAACCCCATGCAATCGAACGATTTCTGAGATATAGATCTTGGCTAACTTCTCGGCATTGTAAGTCACCTTAACCGGAATAAAATGAGCAGATTTAGTTAACCTATCAACAATCACCCAAATGGAGTCATACTTACCCATTGTCTTCGGAAGACCAACCACAAAATCCATTGCAATTCTTTCCCACTTCCATTACGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACACTTGGCAATAAAGTCAACAAATATCACGCTTCATTCTACTCCACCAAAAGTGCTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGAATGTATCGAATACTTTGAACTATGAGCCTCTGTCAGAATAGTGTTAATCAAATCATCAACTCGGGGT</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAAC-AATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599718" ref_strand="+" ref_description="SGN-U599718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205427|gb|ABI34389.1| (e_value=5e-23) Polyprotein,; ">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="-" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="150421" stop="149644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150121" g_stop="149945" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="-" ref_id="SGN-U599718" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150121" e_stop="149945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599792" ref_strand="+" ref_description="SGN-U599792 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tattgtaanccctactatatgcttaattgtatgtttgcntgantatgattatgtgattgtgataagataaacatgatgaaaatattgaatcccaaatcttgaaaggaaactttaatatacnttattaatgatgatgccttggtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0256E08-6YciB/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0256E08.2" temp_strand="+" temp_description="C01HBa0256E08.2  AC171730.2 htgs_phase:3 submitted_to_sgn_as:101905.asm.C15 sequenced_by:cornell upload_account_name:us 101905.asm.assem.ace.1 (whole contig)">
        <position start="151158" stop="151903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151458" g_stop="151603" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0256E08.2" gen_strand="+" ref_id="SGN-U599792" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>146</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0256E08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151458" e_stop="151603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTAAACCCTACTATATGCTTAATGGTATGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTAAA</genome_strand>
        <mrna_strand>TATTGTAANCCCTACTATATGCTTAATTGTATGTTTGCNTGANTATGATTATGTGATTGTGATAAGATAAACATGATGAAAATATTGAATCCCAAATCTTGAAAGGAAACTTTAATATACNTTATTAATGATGATGCCTTGGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>28</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="32837" PGL_stop="31118"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32837" e_stop="31118"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="32837" e_stop="31118" e_length="1720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32837" stop="32513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32626" stop="31118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGGGAAAGCAAAGTCCAACCCAGAATTACATCAAAGTCAACCATTTTAAGATAACCAAGTCCACATAAGTACTGCTCCCCACAAAAGTCACCAAACAAGACCTATATACTTTATTAACTATCACAGACTCACCCACCGGGGTAGAAACACGAATAGGCATGTAAAGCAATTCACAAGGTAAATTAAAACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACTGAAAGATTACCTGTGATGACAGCATCAGATGTCTCCGCCTCAGATCGCCCAGGGAAAGCGTAACAATGGGCCCCATTACCTGTCTGCCCGTTGCCCCTACCATGTGGTGCTGTAGTGGCTTTAGTTTGCATGTCACCCCGGCCGTTTTGGTGACCACCATTACCTCATCCACCACGTCCCCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGGTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAGCACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTATAGTCTGTAGTGAAGACTGAATTTGTCGGACTGAGTAACCTCCTGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTTTTCTATGTCGATGCCATGGTGAAGTCATTGGGCTTCACTCCTTCCACCTTTATCACGAAGTCTACCACTTCTTGAAAGGATATTGCAGTAGCCGCTACCTGTAAGGCTGAAATCCGCAATTCTGATCTCAACCCCTTAACAAAGCGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTTAGCCTCATATGCAATAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCGCAAGTCATAGGTGGTGCCTCTGTTGGTTTACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTGGTGACAATCAAATAGAAAATCAGAAGCATCCTCCGATTCAGCACTGTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTACAGGCACTGTAGTCAGACGAGGAAATGTGCGTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCCGCATGTTGTACTTCCGGAGCCTGAGGTGCTGGTGCAGAAAACAGTGGAGGCGCTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACATGATTGATCATCTCTGGGGTAGGTTGGGGAGGCAATCCCTCATTCTGTACTTGTTCAGTTTCCCCTTCCTCACCTTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTTACTGCCCTAGTATCAGATGGGCTACGTGTTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTCCCACGGCCTCTTGCCGCTACTCTT</gDNA_template>
            <first_frame> R  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  C  K  I  W  G  K  Q  S  P  T  Q  N  Y  I  K  V  N  H  F  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  K  Q  D  L  Y  T  L  L  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  *  S  N  S  Q  G  K  L  K  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  E  R  L  P  V  M  T  A  S  D  V  S  A  S  D  R  P  G  K  A  *  Q  W  A  P  L  P  V  C  P  L  P  L  P  C  G  A  V  V  A  L  V  C  M  S  P  R  P  F  W  *  P  P  L  P  H  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  W  F  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  I  V  C  S  E  D  *  I  C  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  Y  V  D  A  M  V  K  S  L  G  F  T  P  S  T  F  I  T  K  S  T  T  S  *  K  D  I  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  L  T  K  R  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  N  A  R  N  F  S  L  I  C  N  N  R  H  P  T  L  L  *  A  Q  E  L  I  S  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  A  R  E  *  C  A  S  H  R  W  C  L  C  W  F  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  I  K  *  K  I  R  S  I  L  R  F  S  T  V  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  H  C  S  Q  T  R  K  C  A  Y  F  Q  *  G  I  H  A  G  S  H  S  S  R  M  L  Y  F  R  S  L  R  C  W  C  R  K  Q  W  R  R  L  A  L  I  R  *  P  A  K  I  S  K  N  M  I  D  H  L  W  G  R  L  G  R  Q  S  L  I  L  Y  L  F  S  F  P  F  L  T  F  S  Y  Y  F  F  S  R  W  R  S  Y  C  P  S  I  R  W  A  T  C  S  S  S  S  S  R  G  R  P  P  T  T  S  P  T  A  S  C  R  Y  S  </first_frame>
            <second_frame>  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  K  V  Q  P  R  I  T  S  K  S  T  I  L  R  *  P  S  P  H  K  Y  C  S  P  Q  K  S  P  N  K  T  Y  I  L  Y  *  L  S  Q  T  H  P  P  G  *  K  H  E  *  A  C  K  A  I  H  K  V  N  *  N  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  L  K  D  Y  L  *  *  Q  H  Q  M  S  P  P  Q  I  A  Q  G  K  R  N  N  G  P  H  Y  L  S  A  R  C  P  Y  H  V  V  L  *  W  L  *  F  A  C  H  P  G  R  F  G  D  H  H  Y  L  I  H  H  V  P  Q  N  N  G  L  C  H  D  H  L  Y  L  *  L  L  G  V  Y  N  S  G  L  D  N  S  S  *  Y  V  Q  S  P  H  I  H  S  T  L  W  S  Q  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  *  S  V  V  K  T  E  F  V  G  L  S  N  L  L  N  P  V  L  *  S  K  N  H  *  T  H  L  P  F  E  T  F  S  M  S  M  P  W  *  S  H  W  A  S  L  L  P  P  L  S  R  S  L  P  L  L  E  R  I  L  Q  *  P  L  P  V  R  L  K  S  A  I  L  I  S  T  P  *  Q  S  G  E  S  A  L  V  D  *  N  K  V  G  W  H  T  W  I  M  H  E  T  L  A  S  Y  A  I  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  D  A  Q  V  I  G  G  A  S  V  G  L  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  W  *  Q  S  N  R  K  S  E  A  S  S  D  S  A  L  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  T  G  T  V  V  R  R  G  N  V  R  I  S  N  E  A  S  M  R  G  A  T  V  A  A  C  C  T  S  G  A  *  G  A  G  A  E  N  S  G  G  A  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  V  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  R  V  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  T  L </second_frame>
            <third_frame>   D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  L  Q  N  L  G  K  A  K  S  N  P  E  L  H  Q  S  Q  P  F  *  D  N  Q  V  H  I  S  T  A  P  H  K  S  H  Q  T  R  P  I  Y  F  I  N  Y  H  R  L  T  H  R  G  R  N  T  N  R  H  V  K  Q  F  T  R  *  I  K  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  *  K  I  T  C  D  D  S  I  R  C  L  R  L  R  S  P  R  E  S  V  T  M  G  P  I  T  C  L  P  V  A  P  T  M  W  C  C  S  G  F  S  L  H  V  T  P  A  V  L  V  T  T  I  T  S  S  T  T  S  P  R  I  T  A  S  A  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  V  W  T  I  P  P  N  M  S  S  L  P  T  S  I  A  L  S  G  V  K  H  R  S  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  L  S  D  *  V  T  S  *  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  P  F  L  C  R  C  H  G  E  V  I  G  L  H  S  F  H  L  Y  H  E  V  Y  H  F  L  K  G  Y  C  S  S  R  Y  L  *  G  *  N  P  Q  F  *  S  Q  P  L  N  K  A  A  N  P  L  L  W  T  E  T  K  L  G  G  I  P  G  *  C  T  K  L  *  P  H  M  Q  *  P  T  S  Y  L  A  L  G  S  R  T  H  L  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  S  *  R  M  M  R  K  S  *  V  V  P  L  L  V  Y  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  S  C  V  V  A  G  D  N  Q  I  E  N  Q  K  H  P  P  I  Q  H  C  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  Q  A  L  *  S  D  E  E  M  C  V  F  P  M  R  H  P  C  G  E  P  Q  *  P  H  V  V  L  P  E  P  E  V  L  V  Q  K  T  V  E  A  L  G  L  D  Q  I  T  R  *  D  K  Q  E  H  D  *  S  S  L  G  *  V  G  E  A  I  P  H  S  V  L  V  Q  F  P  L  P  H  L  L  L  L  L  L  Q  S  V  E  E  L  L  P  *  Y  Q  M  G  Y  V  F  V  L  F  L  *  R  T  S  S  H  D  L  S  H  G  L  L  P  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32505" stop="32143"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KITCDDSIRCLRLRSPRESVTMGPITCLPVAPTMWCCSGFSLHVTPAVLVTTITSSTTSPRITASAMTTSTSSYWGSITLVWTIPPNMSSLPTSIALSGVKHRSLREVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31885" stop="31655"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKVGWHTWIMHETLASYAITDILPCSRLKNSSLFLSLKVRGIYFSINKLENDAQVIGGASVGLHSTCDRHHILAFP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31340" stop="31119"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISKNMIDHLWGRLGRQSLILYLFSFPFLTFSYYFFSRWRSYCPSIRWATCSSSSSRGRPPTTSPTASCRYS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="31182" PGL_stop="31737"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31182" e_stop="31737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="31182" e_stop="31737" e_length="556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31182" stop="31737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACGTAGCCCATCTGATACTAGGGCAGTAACTCCTCCACCGACTGAAGAAGTAGTAAGAGAAGGTGAGGAAGGGGAAACTGAACAAGTACAGAATGAGGGATTGCCTCCCCAACCTACCCCAGAGATGATCAATCATGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAAGCGCCTCCACTGTTTTCTGCACCAGCACCTCAGGCTCCGGAAGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATACGCACATTTCCTCGTCTGACTACAGTGCCTGTAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAACAGTGCTGAATCGGAGGATGCTTCTGATTTTCTATTTGATTGTCACCAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTAAACCAACAGAGGCACCACCTATGACTTGCGCATCATTCT</gDNA_template>
            <first_frame> T  R  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  H  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  L  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  R  T  F  P  R  L  T  T  V  P  V  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  N  S  A  E  S  E  D  A  S  D  F  L  F  D  C  H  Q  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  K  P  T  E  A  P  P  M  T  C  A  S  F  </first_frame>
            <second_frame>  H  V  A  H  L  I  L  G  Q  *  L  L  H  R  L  K  K  *  *  E  K  V  R  K  G  K  L  N  K  Y  R  M  R  D  C  L  P  N  L  P  Q  R  *  S  I  M  F  L  L  I  L  A  G  Y  L  I  K  A  K  R  L  H  C  F  L  H  Q  H  L  R  L  R  K  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  Y  A  H  F  L  V  *  L  Q  C  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  T  V  L  N  R  R  M  L  L  I  F  Y  L  I  V  T  S  Y  Y  T  R  W  V  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  A  H  H  S </second_frame>
            <third_frame>   T  *  P  I  *  Y  *  G  S  N  S  S  T  D  *  R  S  S  K  R  R  *  G  R  G  N  *  T  S  T  E  *  G  I  A  S  P  T  Y  P  R  D  D  Q  S  C  S  C  L  S  *  R  V  I  *  S  R  P  S  A  S  T  V  F  C  T  S  T  S  G  S  G  S  T  T  C  G  Y  C  G  S  P  H  G  C  L  I  G  N  T  H  I  S  S  S  D  Y  S  A  C  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  Q  C  *  I  G  G  C  F  *  F  S  I  *  L  S  P  A  T  T  Q  D  G  Y  S  R  T  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  *  T  N  R  G  T  T  Y  D  L  R  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31182" stop="31736"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRSPSDTRAVTPPPTEEVVREGEEGETEQVQNEGLPPQPTPEMINHVLAYLSGLSDQGQAPPLFSAPAPQAPEVQHAATVAPRMDASLEIRTFPRLTTVPVMTNDQHELFSKFLKLKPPVFNSAESEDASDFLFDCHQLLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECKPTEAPPMTCASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="97219" PGL_stop="96940"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97219" e_stop="96940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="97219" e_stop="96940" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97219" stop="96940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603972" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCAAACCCTCCTTCTTTTACCCTAATTAACATGTAATTAAGTGTAAAAGATGACAATAATGACCCACAATTTAACTCAAGGTTACCTCTTTTATCCTCCAAGAAATTGAGTTATTAATATAAACCCACGAAATATATAATTATAGCAGGAATAGTCCAAAAACATCCCTTTAAAACTTAACCAGAATTCCGACTTCAACTGGGATTACGCAACCTGTGACGGCCCGTCGCGCCTGCGACGGTCCGTCATACAGGTTCGTCAGAGACTCGATTTCCTTA</gDNA_template>
            <first_frame> I  Q  T  L  L  L  L  P  *  L  T  C  N  *  V  *  K  M  T  I  M  T  H  N  L  T  Q  G  Y  L  F  Y  P  P  R  N  *  V  I  N  I  N  P  R  N  I  *  L  *  Q  E  *  S  K  N  I  P  L  K  L  N  Q  N  S  D  F  N  W  D  Y  A  T  C  D  G  P  S  R  L  R  R  S  V  I  Q  V  R  Q  R  L  D  F  L  </first_frame>
            <second_frame>  F  K  P  S  F  F  Y  P  N  *  H  V  I  K  C  K  R  *  Q  *  *  P  T  I  *  L  K  V  T  S  F  I  L  Q  E  I  E  L  L  I  *  T  H  E  I  Y  N  Y  S  R  N  S  P  K  T  S  L  *  N  L  T  R  I  P  T  S  T  G  I  T  Q  P  V  T  A  R  R  A  C  D  G  P  S  Y  R  F  V  R  D  S  I  S  L </second_frame>
            <third_frame>   S  N  P  P  S  F  T  L  I  N  M  *  L  S  V  K  D  D  N  N  D  P  Q  F  N  S  R  L  P  L  L  S  S  K  K  L  S  Y  *  Y  K  P  T  K  Y  I  I  I  A  G  I  V  Q  K  H  P  F  K  T  *  P  E  F  R  L  Q  L  G  L  R  N  L  *  R  P  V  A  P  A  T  V  R  H  T  G  S  S  E  T  R  F  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0256E08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="97517" PGL_stop="98115"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97517" e_stop="97794"/>
            <exon e_start="97872" e_stop="98115"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.942"/>
          <exon-only e_score="0.881"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="97517" e_stop="97794" e_length="278"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="97795" i_stop="97871" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="0.881">
            <gDNA_exon_boundary e_start="97872" e_stop="98115" e_length="244"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97517" stop="97794"/>
              <exon start="97872" stop="98115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593741" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACCCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGACTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCAC : GTTCCGACACTAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATTTTGTAAGATGTTAATATATTCAATCTAATGAACCTAATTCCCAAATGGGTATGAGGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGTTAACTGTAAATGTTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATATT</gDNA_template>
            <first_frame> K  P  *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  *  K  *  *  D  *  G  I  G  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T :   F  R  H  *  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  F  V  R  C  *  Y  I  Q  S  N  E  P  N  S  Q  M  G  M  R  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  L  T  V  N  V  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  I </first_frame>
            <second_frame>  N  P  N  L  L  C  *  *  *  C  L  G  I  K  E  D  L  M  N  E  S  S  E  I  R  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  Y  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S   : R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  L  *  D  V  N  I  F  N  L  M  N  L  I  P  K  W  V  *  G  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  C  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I   </second_frame>
            <third_frame>   T  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  T  *  *  M  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  :  V  P  T  L  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  F  C  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  G  Y  E  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  V  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0256E08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="105028" PGL_stop="105204"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105028" e_stop="105204"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="105028" e_stop="105204" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105028" stop="105204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACTTCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGTTATCCCAATGGCCACCAAACTCTATCATACATGCACGAAGCATATACTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  L  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  W  P  P  N  S  I  I  H  A  R  S  I  Y  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  F  S  S  H  T  M  L  Q  M  G  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  G  H  Q  T  L  S  Y  M  H  E  A  Y  T  P  T  L  E  S  S  F  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  P  I  Q  C  F  K  W  G  H  I  N  T  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  L  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  P  F  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0256E08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="105243" PGL_stop="105727"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105243" e_stop="105727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="105243" e_stop="105727" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105243" stop="105727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCAATTCCGCATGCAATGTTTTCCAAAACGTAGAATTAAACTGTGTACCTCTATCTGATATGATGGATAGTGGAACCCCATGCAATCGAACGATTTCTGAGATATAGATCTTGGTTAACTTCTCTGCATTGTAAGTCACCTTTACCGGAATGAAATGAGCAGATTAGTTAACCTATCAACAATCACCCAAATGGAGTCATACTTACCCATTGTCCTTGGAAGACCAACCACAAAGTCCATTGCAATTCTTTCCCACTTCCATTCCGGAATGGGCATTCTCTAAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTGACTTGTTGACAGTTTGGACACTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGTTTTAGGTCACGATACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTATCAGAATAGTGTTGATCAAATCATCGAC</gDNA_template>
            <first_frame> T  Q  F  R  M  Q  C  F  P  K  R  R  I  K  L  C  T  S  I  *  Y  D  G  *  W  N  P  M  Q  S  N  D  F  *  D  I  D  L  G  *  L  L  C  I  V  S  H  L  Y  R  N  E  M  S  R  L  V  N  L  S  T  I  T  Q  M  E  S  Y  L  P  I  V  L  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  L  T  C  *  Q  F  G  H  L  A  I  K  S  T  I  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  I  R  I  V  L  I  K  S  S   </first_frame>
            <second_frame>  L  N  S  A  C  N  V  F  Q  N  V  E  L  N  C  V  P  L  S  D  M  M  D  S  G  T  P  C  N  R  T  I  S  E  I  *  I  L  V  N  F  S  A  L  *  V  T  F  T  G  M  K  *  A  D  *  L  T  Y  Q  Q  S  P  K  W  S  H  T  Y  P  L  S  L  E  D  Q  P  Q  S  P  L  Q  F  F  P  T  S  I  P  E  W  A  F  S  K  V  F  L  R  A  F  G  V  H  T  *  L  V  D  S  L  D  T  W  Q  *  S  Q  Q  Y  H  A  S  F  Y  S  T  K  S  V  V  L  G  H  D  T  S  W  L  H  P  D  V  *  N  T  L  N  Y  E  P  L  S  E  *  C  *  S  N  H  R  </second_frame>
            <third_frame>   S  I  P  H  A  M  F  S  K  T  *  N  *  T  V  Y  L  Y  L  I  *  W  I  V  E  P  H  A  I  E  R  F  L  R  Y  R  S  W  L  T  S  L  H  C  K  S  P  L  P  E  *  N  E  Q  I  S  *  P  I  N  N  H  P  N  G  V  I  L  T  H  C  P  W  K  T  N  H  K  V  H  C  N  S  F  P  L  P  F  R  N  G  H  S  L  K  C  S  S  G  P  L  V  F  I  L  D  L  L  T  V  W  T  L  G  N  K  V  N  N  I  T  L  H  S  T  P  P  K  V  L  F  *  V  T  I  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  Y  Q  N  S  V  D  Q  I  I  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105416" stop="105640"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PINNHPNGVILTHCPWKTNHKVHCNSFPLPFRNGHSLKCSSGPLVFILDLLTVWTLGNKVNNITLHSTPPKVLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="106507" PGL_stop="107319"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106507" e_stop="107319"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="106507" e_stop="107319" e_length="813"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106507" stop="107319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACTACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAAGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCGTAATGCCCATACCTCGTTTGATAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACACCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTGTCTTAAATCCGCGGGAGCCATTCTATAAGGGGGTATCGAAATGGGGAGAGTACCCGGTTCAAGGTCAATGCAAAAATCAATATCCCTATCTGGTGGCATACTAGGAAGATCTG</gDNA_template>
            <first_frame> R  I  P  *  Q  I  D  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  L  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  L  L  Q  I  R  N  A  H  T  S  F  D  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  T  K  E  M  H  L  V  *  *  S  L  C  L  T  T  L  E  V  G  L  L  T  V  L  N  P  R  E  P  F  Y  K  G  V  S  K  W  G  E  Y  P  V  Q  G  Q  C  K  N  Q  Y  P  Y  L  V  A  Y  *  E  D  L </first_frame>
            <second_frame>  E  S  L  D  K  S  T  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  Y  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  K  G  I  R  K  T  K  R  H  Y  Y  K  F  V  M  P  I  P  R  L  I  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  *  Q  L  L  K  L  G  F  *  L  S  *  I  R  G  S  H  S  I  R  G  Y  R  N  G  E  S  T  R  F  K  V  N  A  K  I  N  I  P  I  W  W  H  T  R  K  I   </second_frame>
            <third_frame>   N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  R  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  *  *  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  H  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  W  A  F  N  C  L  K  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  M  Q  K  S  I  S  L  S  G  G  I  L  G  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106772" stop="107011"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERSKGIRKTKRHYYKFVMPIPRLISSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106704" stop="106901"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAARAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="109217" PGL_stop="106636"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109217" e_stop="107026"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="109217" e_stop="107026" e_length="2192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109217" stop="107026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109217" stop="107792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109199" stop="108447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGCAACGGCAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAACCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTAATGAAGTAGTAAGAGAAGGGGATGATGGGGAGAATGAACAAGTGCAGAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCAGGTTATCTGATCAGGGACAGGCCCCTCCAGTGTTTTCTGCACCAACATCTCCGGTTTCAGAGGTACAACATGCAGCAACTATGGCTCCTCGTATGGATGCCTTATTGGACATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCTGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACAGTCACGAGCTACTACACAAGATGAGTATAGTAGAGCGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTACAAGAGGTGGTAGACTTCGTGATAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCACGACATCGACATCAAAAAGGTTTCAAAAGGGAGGCGAGTTTAATGGTTCTTACTCTAGAGGACAACGTTGCGTAGGTTACTTAGTTCGACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGGCTCCAGAGAGTGTTATGGGTGTGGGGAGACTGGGCATATTAGGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCCGAGGTGATGGGTAAACTGGATCCACTACATCACAACATGGTAAGGGCAACGGACAGATGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCCGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTGTTTGGTGAATTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAAGTTGCGATTTTGGATTGTAATGCTAAAACGATGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCCTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTAAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTAGTATGCCACCAGATAGGGATATTGATTTTTGCATTGACCTTGAACCGGGTACTCTCCCCATTTCGATACCCCCTTATAGAATGGCTCCCGCGGATTTAAGACAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGTGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCATTGATG</gDNA_template>
            <first_frame> K  S  N  G  K  R  P  W  *  R  S  W  E  D  V  L  *  R  K  R  T  S  T  *  P  I  *  Y  *  G  G  D  S  S  T  D  *  *  S  S  K  R  R  G  *  W  G  E  *  T  S  A  E  *  G  N  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  Q  V  I  *  S  G  T  G  P  S  S  V  F  C  T  N  I  S  G  F  R  G  T  T  C  S  N  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  K  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  G  L  Q  G  C  *  I  G  G  C  L  *  F  S  G  *  Q  S  R  A  T  T  Q  D  E  Y  S  R  A  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I  L  *  L  V  Y  G  E  V  Y  P  P  N  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  I  I  P  V  C  H  P  T  M  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  T  R  G  G  R  L  R  D  R  G  G  R  S  E  A  R  *  L  H  H  D  I  D  I  K  K  V  S  K  G  R  R  V  *  W  F  L  L  *  R  T  T  L  R  R  L  L  S  S  T  H  S  V  F  T  T  D  C  S  W  G  S  T  S  D  R  S  T  L  L  *  E  T  Y  A  W  L  Q  R  V  L  W  V  W  G  D  W  A  Y  *  E  K  L  S  K  T  E  L  *  T  P  N  G  *  R  *  R  W  S  W  *  R  P  S  F  W  R  T  W  W  S  R  *  W  W  S  P  K  R  P  R  *  W  V  N  W  I  H  Y  I  T  T  W  *  G  Q  R  T  D  E  R  *  G  P  L  L  R  F  P  W  A  V  *  S  G  G  I  *  C  C  H  H  R  *  S  S  G  L  *  L  H  G  F  C  I  V  *  S  R  I  H  I  F  L  C  I  F  L  I  C  *  W  S  K  F  T  L  *  I  T  *  Y  A  Y  S  C  F  Y  S  G  G  *  V  C  G  S  *  K  G  V  *  V  L  F  G  E  F  C  G  E  Q  H  L  C  R  F  G  Y  L  R  N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  S  C  D  F  G  L  *  C  *  N  D  D  V  S  Q  A  W  D  R  S  V  S  L  G  G  *  L  H  F  Q  S  G  A  Y  H  L  P  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  *  Y  A  T  R  *  G  Y  *  F  L  H  *  P  *  T  G  Y  S  P  H  F  D  T  P  L  *  N  G  S  R  G  F  K  T  V  K  S  P  T  S  R  V  V  K  Q  R  L  Y  *  T  K  C  I  S  L  V  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L  Q  T  T  K  Q  G  N  H  K  E  Q  V  S  S  S  P  H  *   </first_frame>
            <second_frame>  R  A  T  A  R  G  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  N  P  S  D  T  R  A  V  T  P  P  P  T  N  E  V  V  R  E  G  D  D  G  E  N  E  Q  V  Q  N  E  E  M  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  R  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  S  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  L  L  D  I  G  T  F  P  S  L  T  T  G  P  I  M  T  N  D  L  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  S  H  E  L  L  H  K  M  S  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  L  Q  E  V  V  D  F  V  I  E  V  E  G  V  K  P  D  D  F  T  T  T  S  T  S  K  R  F  Q  K  G  G  E  F  N  G  S  Y  S  R  G  Q  R  C  V  G  Y  L  V  R  P  I  Q  S  S  L  Q  T  V  V  G  G  P  P  Q  T  G  Q  H  F  S  E  R  P  M  L  G  S  R  E  C  Y  G  C  G  E  T  G  H  I  R  R  N  C  P  K  Q  S  Y  R  P  P  M  A  R  G  R  G  G  H  G  R  G  R  H  S  G  G  R  G  G  R  G  N  G  G  H  Q  N  G  R  G  D  G  *  T  G  S  T  T  S  Q  H  G  K  G  N  G  Q  M  N  D  R  A  H  C  Y  A  F  P  G  R  S  E  A  E  A  S  D  A  V  I  T  G  N  L  L  V  C  D  C  M  A  S  V  L  F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  N  G  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  V  V  E  K  V  Y  R  S  C  L  V  N  F  V  G  S  N  T  Y  V  D  L  V  I  L  E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  V  A  I  L  D  C  N  A  K  T  M  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  L  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  K  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  S  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  L  P  I  S  I  P  P  Y  R  M  A  P  A  D  L  R  Q  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  C  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  </second_frame>
            <third_frame>   E  Q  R  Q  E  A  V  V  E  V  V  G  G  R  P  L  E  E  E  D  E  H  L  T  H  L  I  L  G  R  *  L  L  H  R  L  M  K  *  *  E  K  G  M  M  G  R  M  N  K  C  R  M  R  K  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  R  D  R  P  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  Q  L  W  L  L  V  W  M  P  Y  W  T  *  A  R  F  Q  V  *  L  L  G  L  *  *  Q  M  I  C  M  N  F  S  V  S  S  *  N  *  N  L  R  S  S  R  V  L  N  R  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  *  V  *  *  S  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  L  A  C  L  W  R  S  I  S  P  E  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  Y  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  Y  K  R  W  *  T  S  *  *  R  W  K  E  *  S  Q  M  T  S  P  R  H  R  H  Q  K  G  F  K  R  E  A  S  L  M  V  L  T  L  E  D  N  V  A  *  V  T  *  F  D  P  F  S  L  H  Y  R  L  *  L  G  V  H  L  R  P  V  N  T  S  L  R  D  L  C  L  A  P  E  S  V  M  G  V  G  R  L  G  I  L  G  E  I  V  Q  N  R  V  I  D  P  Q  W  L  E  V  E  V  V  M  V  E  A  V  I  L  E  D  V  V  V  E  V  M  V  V  T  K  T  A  E  V  M  G  K  L  D  P  L  H  H  N  M  V  R  A  T  D  R  *  T  I  G  P  I  V  T  L  S  L  G  G  L  K  R  R  H  L  M  L  S  S  Q  V  I  F  W  F  V  I  A  W  L  L  Y  C  L  I  P  D  P  H  F  L  M  Y  L  P  H  L  L  M  V  *  I  Y  I  V  N  Y  L  I  C  L  F  V  F  L  L  R  W  V  S  L  W  *  L  K  R  C  I  G  L  V  W  *  I  L  W  G  A  T  L  M  *  I  W  L  S  *  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  K  L  R  F  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  F  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  I  F  A  L  T  L  N  R  V  L  S  P  F  R  Y  P  L  I  E  W  L  P  R  I  *  D  S  *  K  P  N  F  K  S  C  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T  D  N  *  T  R  *  P  *  R  T  S  I  L  F  P  A  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109216" stop="107954"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1260</number_coding_nucleotides>
                  <number_encoded_amino_acids>420</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RATARGRGRGRGRTSSRGRGRAPNPSDTRAVTPPPTNEVVREGDDGENEQVQNEEMPPQPTPEMINQVLAYLSRLSDQGQAPPVFSAPTSPVSEVQHAATMAPRMDALLDIGTFPSLTTGPIMTNDLHELFSKFLKLKPPVFKGAESEDAYDFLVDSHELLHKMSIVERFGVEFVTYQFQGNAKMWWRSHIECQPTEAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEQGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQVAATAKSLQEVVDFVIEVEGVKPDDFTTTSTSKRFQKGGEFNGSYSRGQRCVGYLVRPIQSSLQTVVGGPPQTGQHFSERPMLGSRECYGCGETGHIRRNCPKQSYRPPMARGRGGHGRGRHSGGRGGRGNGGHQNGRGDG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107953" stop="107027"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>927</number_coding_nucleotides>
                  <number_encoded_amino_acids>309</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGSTTSQHGKGNGQMNDRAHCYAFPGRSEAEASDAVITGNLLVCDCMASVLFDPGSTFSYVSSSFANGLNLHCELLDMPIRVSTPVGESVVVEKVYRSCLVNFVGSNTYVDLVILEMDDFDVILGMTWLSPQVAILDCNAKTMTLAKPGTDPLVWEGDYTSNPVRIISLLRAKKMVSKGCLAFLAHLKDDTTQVPSIKSVSVVREFLDVFPADLPSMPPDRDIDFCIDLEPGTLPISIPPYRMAPADLRQLKAQLQELLNKGFIRPSASPWCAPVLFVKKKDGSFRMCIDYRQLNKVTIKNKYPLPRID</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="109199" e_stop="108338"/>
            <exon e_start="107593" e_stop="107079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.922"/>
          <exon-only e_score="0.895"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="109199" e_stop="108338" e_length="862"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108337" i_stop="107594" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.895">
            <gDNA_exon_boundary e_start="107593" e_stop="107079" e_length="515"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109199" stop="108447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108552" stop="108338"/>
              <exon start="107593" stop="107079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAACCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTAATGAAGTAGTAAGAGAAGGGGATGATGGGGAGAATGAACAAGTGCAGAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCAGGTTATCTGATCAGGGACAGGCCCCTCCAGTGTTTTCTGCACCAACATCTCCGGTTTCAGAGGTACAACATGCAGCAACTATGGCTCCTCGTATGGATGCCTTATTGGACATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCTGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACAGTCACGAGCTACTACACAAGATGAGTATAGTAGAGCGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTACAAGAGGTGGTAGACTTC : GATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAAGTTGCGATTTTGGATTGTAATGCTAAAACGATGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCCTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTAAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTAGTATGCCACCAGATAGGGATATTGATTTTTGCATTGACCTTGAACCGGGTACTCTCCCCATTTCGATACCCCCTTATAGAATGGCTCCCGCGGATTTAAGACAGTTAAAAGCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGTGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAG</gDNA_template>
            <first_frame> P  W  *  R  S  W  E  D  V  L  *  R  K  R  T  S  T  *  P  I  *  Y  *  G  G  D  S  S  T  D  *  *  S  S  K  R  R  G  *  W  G  E  *  T  S  A  E  *  G  N  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  Q  V  I  *  S  G  T  G  P  S  S  V  F  C  T  N  I  S  G  F  R  G  T  T  C  S  N  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  K  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  G  L  Q  G  C  *  I  G  G  C  L  *  F  S  G  *  Q  S  R  A  T  T  Q  D  E  Y  S  R  A  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I  L  *  L  V  Y  G  E  V  Y  P  P  N  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  I  I  P  V  C  H  P  T  M  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  T  R  G  G  R  L   : R  C  N  S  G  Y  D  L  A  F  S  A  S  C  D  F  G  L  *  C  *  N  D  D  V  S  Q  A  W  D  R  S  V  S  L  G  G  *  L  H  F  Q  S  G  A  Y  H  L  P  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  *  Y  A  T  R  *  G  Y  *  F  L  H  *  P  *  T  G  Y  S  P  H  F  D  T  P  L  *  N  G  S  R  G  F  K  T  V  K  S  P  T  S  R  V  V  K  Q  R  L  Y  *  T  K  C  I  S  L  V  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L  Q </first_frame>
            <second_frame>  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  N  P  S  D  T  R  A  V  T  P  P  P  T  N  E  V  V  R  E  G  D  D  G  E  N  E  Q  V  Q  N  E  E  M  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  R  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  S  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  L  L  D  I  G  T  F  P  S  L  T  T  G  P  I  M  T  N  D  L  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  S  H  E  L  L  H  K  M  S  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  L  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  V  A  I  L  D  C  N  A  K  T  M  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  L  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  K  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  S  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  L  P  I  S  I  P  P  Y  R  M  A  P  A  D  L  R  Q  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  C  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y   </second_frame>
            <third_frame>   V  V  E  V  V  G  G  R  P  L  E  E  E  D  E  H  L  T  H  L  I  L  G  R  *  L  L  H  R  L  M  K  *  *  E  K  G  M  M  G  R  M  N  K  C  R  M  R  K  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  R  D  R  P  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  Q  L  W  L  L  V  W  M  P  Y  W  T  *  A  R  F  Q  V  *  L  L  G  L  *  *  Q  M  I  C  M  N  F  S  V  S  S  *  N  *  N  L  R  S  S  R  V  L  N  R  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  *  V  *  *  S  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  L  A  C  L  W  R  S  I  S  P  E  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  Y  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  Y  K  R  W  *  T  S :   M  *  F  W  V  *  L  G  F  L  R  K  L  R  F  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  F  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  I  F  A  L  T  L  N  R  V  L  S  P  F  R  Y  P  L  I  E  W  L  P  R  I  *  D  S  *  K  P  N  F  K  S  C  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109198" stop="108338"/>
                    <exon start="107593" stop="107081"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1374</number_coding_nucleotides>
                  <number_encoded_amino_acids>458</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGRGRTSSRGRGRAPNPSDTRAVTPPPTNEVVREGDDGENEQVQNEEMPPQPTPEMINQVLAYLSRLSDQGQAPPVFSAPTSPVSEVQHAATMAPRMDALLDIGTFPSLTTGPIMTNDLHELFSKFLKLKPPVFKGAESEDAYDFLVDSHELLHKMSIVERFGVEFVTYQFQGNAKMWWRSHIECQPTEAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEQGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQVAATAKSLQEVVDFDVILGMTWLSPQVAILDCNAKTMTLAKPGTDPLVWEGDYTSNPVRIISLLRAKKMVSKGCLAFLAHLKDDTTQVPSIKSVSVVREFLDVFPADLPSMPPDRDIDFCIDLEPGTLPISIPPYRMAPADLRQLKAQLQELLNKGFIRPSASPWCAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="109199" e_stop="108315"/>
            <exon e_start="107199" e_stop="106636"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.913"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="109199" e_stop="108315" e_length="885"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108314" i_stop="107200" i_length="1115"/>
          </intron>
          <exon e_serial="2" e_score="0.936">
            <gDNA_exon_boundary e_start="107199" e_stop="106636" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109199" stop="108447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109187" stop="108315"/>
              <exon start="107199" stop="106636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACCTAACCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTAATGAAGTAGTAAGAGAAGGGGATGATGGGGAGAATGAACAAGTGCAGAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCAGGTTATCTGATCAGGGACAGGCCCCTCCAGTGTTTTCTGCACCAACATCTCCGGTTTCAGAGGTACAACATGCAGCAACTATGGCTCCTCGTATGGATGCCTTATTGGACATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCTGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACAGTCACGAGCTACTACACAAGATGAGTATAGTAGAGCGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTACAAGAGGTGGTAGACTTCGTGATAGAGGTGGAAGGAGTGAA : AAGCCCAACTTCAAGAGTTGTTAAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGTGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGACAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTATCAAACGAGGTATGGGCATTACGAATTTGTAGTAATGTCTTTTGGTCTTACGAATGCCCTTGCTGCGTTCATGAGCTTGATGAACGGGATTTTTAAGCCATATTTGGACCTCTTCGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTAGTTTCTA</gDNA_template>
            <first_frame> P  W  *  R  S  W  E  D  V  L  *  R  K  R  T  S  T  *  P  I  *  Y  *  G  G  D  S  S  T  D  *  *  S  S  K  R  R  G  *  W  G  E  *  T  S  A  E  *  G  N  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  Q  V  I  *  S  G  T  G  P  S  S  V  F  C  T  N  I  S  G  F  R  G  T  T  C  S  N  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  K  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  G  L  Q  G  C  *  I  G  G  C  L  *  F  S  G  *  Q  S  R  A  T  T  Q  D  E  Y  S  R  A  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I  L  *  L  V  Y  G  E  V  Y  P  P  N  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  I  I  P  V  C  H  P  T  M  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  T  R  G  G  R  L  R  D  R  G  G  R  S  E  :  K  P  N  F  K  S  C  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T  D  N  *  T  R  *  P  *  R  T  S  I  L  F  P  A  L  M  T  C  S  I  S  Y  K  V  L  V  S  S  L  R  L  T  *  D  P  V  I  I  N  *  K  Y  G  Q  R  M  C  Q  R  L  L  I  K  R  G  M  G  I  T  N  L  *  *  C  L  L  V  L  R  M  P  L  L  R  S  *  A  *  *  T  G  F  L  S  H  I  W  T  S  S  *  S  Y  L  L  M  I  Y  W  Y  T  Q  R  A  R  R  N  M  K  S  I  *  E  W  Y  W  K  C  *  G  R  K  S  F  M  P  S  S  L  S  V  S  F  G  *  M  Q  C  P  S  W  G  T  *  F  L </first_frame>
            <second_frame>  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  A  P  N  P  S  D  T  R  A  V  T  P  P  P  T  N  E  V  V  R  E  G  D  D  G  E  N  E  Q  V  Q  N  E  E  M  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  R  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  S  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  L  L  D  I  G  T  F  P  S  L  T  T  G  P  I  M  T  N  D  L  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  S  H  E  L  L  H  K  M  S  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  L  Q  E  V  V  D  F  V  I  E  V  E  G  V  K :   S  P  T  S  R  V  V  K  Q  R  L  Y  *  T  K  C  I  S  L  V  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L  Q  T  T  K  Q  G  N  H  K  E  Q  V  S  S  S  P  H  *  *  L  V  R  S  V  T  R  C  L  C  L  L  *  D  *  L  E  I  R  L  S  S  I  E  N  T  G  N  G  C  A  K  D  C  L  S  N  E  V  W  A  L  R  I  C  S  N  V  F  W  S  Y  E  C  P  C  C  V  H  E  L  D  E  R  D  F  *  A  I  F  G  P  L  R  D  R  I  Y  *  *  Y  I  G  I  L  K  E  Q  E  G  T  *  R  A  F  E  N  G  I  G  N  V  E  G  E  K  A  L  C  Q  V  L  *  V  *  V  L  A  R  C  S  V  L  L  G  A  R  S  F   </second_frame>
            <third_frame>   V  V  E  V  V  G  G  R  P  L  E  E  E  D  E  H  L  T  H  L  I  L  G  R  *  L  L  H  R  L  M  K  *  *  E  K  G  M  M  G  R  M  N  K  C  R  M  R  K  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  R  D  R  P  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  Q  L  W  L  L  V  W  M  P  Y  W  T  *  A  R  F  Q  V  *  L  L  G  L  *  *  Q  M  I  C  M  N  F  S  V  S  S  *  N  *  N  L  R  S  S  R  V  L  N  R  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  *  V  *  *  S  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S  L  A  C  L  W  R  S  I  S  P  E  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  Y  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  Y  K  R  W  *  T  S  *  *  R  W  K  E  *   : K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  C  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  D  L  F  D  Q  L  Q  G  A  C  V  F  S  K  I  D  L  R  S  G  Y  H  Q  L  K  I  R  A  T  D  V  P  K  T  A  Y  Q  T  R  Y  G  H  Y  E  F  V  V  M  S  F  G  L  T  N  A  L  A  A  F  M  S  L  M  N  G  I  F  K  P  Y  L  D  L  F  V  I  V  F  I  D  D  I  L  V  Y  S  K  S  K  K  E  H  E  E  H  L  R  M  V  L  E  M  L  R  E  K  K  L  Y  A  K  F  S  K  C  E  F  W  L  D  A  V  S  F  L  G  H  V  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109198" stop="108315"/>
                    <exon start="107199" stop="107160"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGRGRTSSRGRGRAPNPSDTRAVTPPPTNEVVREGDDGENEQVQNEEMPPQPTPEMINQVLAYLSRLSDQGQAPPVFSAPTSPVSEVQHAATMAPRMDALLDIGTFPSLTTGPIMTNDLHELFSKFLKLKPPVFKGAESEDAYDFLVDSHELLHKMSIVERFGVEFVTYQFQGNAKMWWRSHIECQPTEAPPMTWASFSSLFMEKYIPRTLRDRKRDEFLSLEQGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQVAATAKSLQEVVDFVIEVEGVKSPTSRVVKQRLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="107498" PGL_stop="109217"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107498" e_stop="109217"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="107498" e_stop="109217" e_length="1720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107498" stop="107823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107710" stop="109217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGATCTGTCCCAGGCTTGGCTAACGTCATCGTTTTAGCATTACAATCCAAAATCGCAACTTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCGGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCATCTGTCCGTTGCCCTTACCATGTTGTGATGTAGTGGATCCAGTTTACCCATCACCTCGGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTTCTCCTAATATGCCCAGTCTCCCCACACCCATAACACTCTCTGGAGCCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTAAGTAACCTACGCAACGTTGTCCTCTAGAGTAAGAACCATTAAACTCGCCTCCCTTTTGAAACCTTTTTGATGTCGATGTCGTGGTGAAGTCATCTGGCTTCACTCCTTCCACCTCTATCACGAAGTCTACCACCTCTTGTAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGGCGAATCCGCTCTTGTGGACTGAAACATAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGCTCTACTATACTCATCTTGTGTAGTAGCTCGTGACTGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCAGATCATTTGTCATTATAGGCCCAGTAGTCAGACTTGGAAACGTGCCTATGTCCAATAAGGCATCCATACGAGGAGCCATAGTTGCTGCATGTTGTACCTCTGAAACCGGAGATGTTGGTGCAGAAAACACTGGAGGGGCCTGTCCCTGATCAGATAACCTGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTCTGCACTTGTTCATTCTCCCCATCATCCCCTTCTCTTACTACTTCATTAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGTTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGTTGCTCTT</gDNA_template>
            <first_frame> R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  N  R  N  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  I  H  Q  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  G  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  H  L  S  V  A  L  T  M  L  *  C  S  G  S  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  M  T  A  S  T  M  T  T  S  T  S  S  H  W  G  S  I  T  L  F  W  T  I  S  P  N  M  P  S  L  P  T  P  I  T  L  S  G  A  K  H  R  S  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  G  S  N  *  V  T  Y  A  T  L  S  S  R  V  R  T  I  K  L  A  S  L  L  K  P  F  *  C  R  C  R  G  E  V  I  W  L  H  S  F  H  L  Y  H  E  V  Y  H  L  L  *  G  F  C  R  S  R  Y  L  *  G  *  N  P  Q  L  *  P  Q  P  L  H  K  T  A  N  P  L  L  W  T  E  T  *  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  S  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  L  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  R  R  F  Q  F  Q  E  L  T  E  K  F  M  Q  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  C  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  G  L  S  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  H  F  L  I  L  H  L  F  I  L  P  I  I  P  F  S  Y  Y  F  I  S  R  W  R  S  H  R  P  S  I  R  W  V  R  C  S  S  S  S  S  R  G  R  P  P  T  T  S  T  T  A  S  C  R  C  S  </first_frame>
            <second_frame>  G  S  V  P  G  L  A  N  V  I  V  L  A  L  Q  S  K  I  A  T  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  I  C  P  L  P  L  P  C  C  D  V  V  D  P  V  Y  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  F  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  P  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  M  G  R  T  K  *  P  T  Q  R  C  P  L  E  *  E  P  L  N  S  P  P  F  *  N  L  F  D  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  C  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  H  S  W  V  A  Y  R  D  N  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  L  I  L  C  S  S  S  *  L  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  R  S  F  V  I  I  G  P  V  V  R  L  G  N  V  P  M  S  N  K  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  D  V  G  A  E  N  T  G  G  A  C  P  *  S  D  N  L  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  I  S  S  F  C  T  C  S  F  S  P  S  S  P  S  L  T  T  S  L  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  V  A  L </second_frame>
            <third_frame>   D  L  S  Q  A  W  L  T  S  S  F  *  H  Y  N  P  K  S  Q  L  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  N  S  P  N  K  T  Y  T  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  R  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  R  C  P  Y  H  V  V  M  *  W  I  Q  F  T  H  H  L  G  R  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  D  G  L  Y  H  D  H  L  Y  L  *  P  L  G  V  Y  N  S  V  L  D  N  F  S  *  Y  A  Q  S  P  H  T  H  N  T  L  W  S  Q  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  E  L  S  N  L  R  N  V  V  L  *  S  K  N  H  *  T  R  L  P  F  E  T  F  L  M  S  M  S  W  *  S  H  L  A  S  L  L  P  P  L  S  R  S  L  P  P  L  V  R  I  L  P  *  P  L  P  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  G  E  S  A  L  V  D  *  N  I  V  G  W  H  T  G  I  M  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  F  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  A  L  L  Y  S  S  C  V  V  A  R  D  C  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  P  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  L  E  T  C  L  C  P  I  R  H  P  Y  E  E  P  *  L  L  H  V  V  P  L  K  P  E  M  L  V  Q  K  T  L  E  G  P  V  P  D  Q  I  T  C  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  S  A  L  V  H  S  P  H  H  P  L  L  L  L  L  H  *  S  V  E  E  S  P  P  *  Y  Q  M  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108276" stop="108638"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLFDVDVVVKSSGFTPSTSITKSTTSCKDFAVAATCKAEIRNSDLNPFTKRRIRSCGLKHSWVAYRDNARNLASYALTDILPCSRLKNSSLFLSLKVRGIYFSINKLENEAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107939" stop="108193"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSAVLVTTITSTTTSSRMTASTMTTSTSSHWGSITLFWTISPNMPSLPTPITLSGAKHRSLREVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108995" stop="109216"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISQNLIDHLWGRLGWHFLILHLFILPIIPFSYYFISRWRSHRPSIRWVRCSSSSSRGRPPTTSTTASCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108768" stop="108986"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASSDSAPLKTGGFNFKNLLKSSCRSFVIIGPVVRLGNVPMSNKASIRGAIVAACCTSETGDVGAENTGGACP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="110320" PGL_stop="109269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110320" e_stop="109269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="110320" e_stop="109269" e_length="1052"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110320" stop="109269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAACGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAACTTGATGGTAATTGTTAACCATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATCCAGGGTGAGCTAATGCTTCTAGCTTGGAGTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCTTGGACTAGCTTCTTATGTATTTTTAACTTTTAGAATACTCTTAGTTTAGTCGTTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGAGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTTTATTTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGATATTATATTGAAATGTTAAGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTTGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTATTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCCTTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGTAGATTGTTAGAACTAGAGTAACAACTGCGCCAACACCAAC</gDNA_template>
            <first_frame> V  T  N  R  H  I  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  T  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  S  R  L  E  S  S  C  V  N  L  M  V  I  V  N  H  I  V  F  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  I  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  L  F  L  F  I  C  G  V  Q  Q  T  C  H  R  L  Q  L  N  S  N  S  S  Q  S  Y  Y  I  G  N  P  G  *  A  N  A  S  S  L  E  W  I  F  F  F  K  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  N  F  *  N  T  L  S  L  V  V  *  S  *  M  F  L  *  *  *  L  P  D  F  G  E  *  *  M  L  N  F  R  S  *  *  I  G  L  Y  L  M  S  L  S  L  P  H  Y  F  L  L  I  L  Y  *  N  V  K  V  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  Q  P  G  L  G  R  D  K  L  G  I  R  A  L  G  L  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  L  F  E  R  L  *  D  F  R  K  I  P  F  F  P  S  F  F  R  A  T  T  *  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  L  S  *  I  V  R  T  R  V  T  T  A  P  T  P   </first_frame>
            <second_frame>  S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  I  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  R  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  R  G  L  S  P  H  V  *  T  *  W  *  L  L  T  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  *  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  I  V  F  N  S  T  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  S  G  S  S  S  S  S  L  D  A  L  N  F  R  L  G  L  A  S  Y  V  F  L  T  F  R  I  L  L  V  *  S  F  D  R  R  C  S  C  D  D  D  F  Q  I  L  E  N  N  R  C  *  I  L  E  V  N  E  L  V  F  I  *  *  V  *  V  F  R  I  T  F  C  *  Y  Y  I  E  M  L  R  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  R  N  P  V  W  V  V  T  N  L  V  S  E  H  *  V  C  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  Y  L  R  G  Y  K  T  L  G  K  F  H  S  F  L  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  L  L  E  L  E  *  Q  L  R  Q  H  Q  </second_frame>
            <third_frame>   H  E  P  T  H  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  L  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  P  Y  S  I  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  D  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  S  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  S  R  V  S  *  C  F  *  L  G  V  D  L  L  L  Q  V  L  M  P  *  T  S  G  L  D  *  L  L  M  Y  F  *  L  L  E  Y  S  *  F  S  R  L  I  V  D  V  L  V  M  M  T  S  R  F  W  R  I  I  D  V  E  F  *  K  L  M  N  W  S  L  F  N  E  F  K  S  S  A  L  L  S  V  D  I  I  L  K  C  *  G  *  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  A  T  R  F  G  S  *  Q  T  W  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  I  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  L  S  C  Y  Y  L  N  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  S  F  V  D  C  *  N  *  S  N  N  C  A  N  T  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110037" stop="109750"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YILISILSWPMISTQYPCFVLTPTFMFSSCLFVECSKRAIVFNSTVIQASLTTSEIQGELMLLAWSGSSSSSLDALNFRLGLASYVFLTFRILLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="109987" PGL_stop="110315"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109987" e_stop="110315"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="109987" e_stop="110315" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109987" stop="110315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATATCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATGGTTAACAATTACCATCAAGTTCACACATGAGGACTCAAGCCTCGATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCGTTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATGTGTCGGTTC</gDNA_template>
            <first_frame> R  V  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  S  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  I  L  Y  G  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  N  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  C  V  G   </first_frame>
            <second_frame>  G  Y  *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  M  V  N  N  Y  H  Q  V  H  T  *  G  L  K  P  R  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  R  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  V  </second_frame>
            <third_frame>   G  T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  I  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  N  T  I  W  L  T  I  T  I  K  F  T  H  E  D  S  S  L  D  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  V  I  F  I  S  L  V  S  V  R  D  T  P  L  P  Q  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  M  C  R  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0256E08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="139857" PGL_stop="124001"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="139857" e_stop="139243"/>
            <exon e_start="125074" e_stop="124934"/>
            <exon e_start="124842" e_stop="124603"/>
            <exon e_start="124513" e_stop="124001"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="139857" e_stop="139243" e_length="615"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.975">
            <gDNA_intron_boundary i_start="139242" i_stop="125075" i_length="14168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125074" e_stop="124934" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="124933" i_stop="124843" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124842" e_stop="124603" e_length="240"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="124602" i_stop="124514" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="124513" e_stop="124001" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139857" stop="139243"/>
              <exon start="125074" stop="124934"/>
              <exon start="124842" stop="124603"/>
              <exon start="124513" stop="124001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGCGGAACTGGTCAACGATTATTTCCAACTGAAATTCCTCTTCTTCATAGAACCCTAATTCACACATTTGCAATCGAATCCCCAATTCTTTTCCATAATGCCAGCTATATCATTCATTTCTCACTGATTATTTTCTTTTGTTCAATTTTTAAGTTGAAGTGTGAGTGATATTGATGGAGGGAAATTCGAGTGGTGGCGGTGGTGGTGGAAACGACGTAGAGTTATTGTGCAAGACGTTACAGGTAGAACACAAGCTTTTCTATTTCGACCTGAAGGAGAATCCACGTGGACGATACCTGAAAATCTCGGAGAAAACGTCGGCAACAAGGTCTACTATAATAGTACCATTCAACGGCATCTCATGGTTCCTCGATCTCTTCAATTACTATGTCAATTCAGATGACCAGGATGTCTTTAGCAAAGAACTCCAACTTGATACCAAGGCAGATTATTATATACATATGTCGCTTCAGCTCCTATTTATCTTCTCCACTGTTTTTTAAAACTTTTTATGATTAACTTCTGTTAAAGGTTGTTTTCTTGGTTTTTTTTTTCTGCACGGCAGGTGTTTTACTTTGATGTAGGAGAGAATAGGCGAGGGCGCTTTCTGAAG : GTCTCTGAAGCATCTGTTAGCAGGAACCGTAGTACCATTATTGTTCCAGCAGGAAGTGCCCGGGATGAGGGATGGGCAGCATTTAGGAATATTTTGGCAGAGATTAACGAAGCCTCAAGGCTATTTATTTCGCCCAATCAG : CAGAGTTTGGAAACCTCAGAGCGTCTTGGGCTTTCAGATGATGTAGGAGCTGGTTTTATATCCAGTCACTCTTCTCAATCTGCTCCCACAGCTGATTTGACTATTGAACGGACCATTGATTTGCCAGCAGCTGACGAAGTTAGTGACGTGGGGGTCTCCAAAGTAATCAGGGTTGACCAGAAGAGGTTCTTCTTTGATCTTGGGAATAACAATCGGGGCCATTTCTTACGAATATCGGAG : GTAGCAGGTTCTGACCGCTCTTCAATAATTCTTCCCCTTTCTGGCCTGAAACAATTTTATGACATGGTGGGTCACTTTGTAGAGATAAGCAAAGATCGCCTCGAAGGAATTACAGGTGCAAATGTTCGGACAATTGACTCCCCACAGAGATGACTGGTTGTCTAAGGCGTGGAGCCATGTACTGCAGATAATGGGCAGACGAGTGTTATTCCTATGTTAATTTTCTGCCTGGTCATTGTGTGTTTCAAGTTGAATAAAATGGTATCACTGTTATAAACTGGAAATATAAAGTCAAATGTCAATCATCAATAGGAGGGGGGAATAAGAGAATAAGCCATTATGTTAGGTGAAGGATTATAGCATAAAATGGCACACTCGTATTTAATTTCCTCTTTGCTTTTTTAGGTGTGATTTAAGCTTCTTCTATGTGTGAGAAACTCTCCGCTATGGCTTGGGCTAAACATAATCCTAGGTTGCTGCTAAGTTTGGTTATTGAATATCACGAATATTTTG</gDNA_template>
            <first_frame> Q  A  E  L  V  N  D  Y  F  Q  L  K  F  L  F  F  I  E  P  *  F  T  H  L  Q  S  N  P  Q  F  F  S  I  M  P  A  I  S  F  I  S  H  *  L  F  S  F  V  Q  F  L  S  *  S  V  S  D  I  D  G  G  K  F  E  W  W  R  W  W  W  K  R  R  R  V  I  V  Q  D  V  T  G  R  T  Q  A  F  L  F  R  P  E  G  E  S  T  W  T  I  P  E  N  L  G  E  N  V  G  N  K  V  Y  Y  N  S  T  I  Q  R  H  L  M  V  P  R  S  L  Q  L  L  C  Q  F  R  *  P  G  C  L  *  Q  R  T  P  T  *  Y  Q  G  R  L  L  Y  T  Y  V  A  S  A  P  I  Y  L  L  H  C  F  L  K  L  F  M  I  N  F  C  *  R  L  F  S  W  F  F  F  S  A  R  Q  V  F  Y  F  D  V  G  E  N  R  R  G  R  F  L  K  :  V  S  E  A  S  V  S  R  N  R  S  T  I  I  V  P  A  G  S  A  R  D  E  G  W  A  A  F  R  N  I  L  A  E  I  N  E  A  S  R  L  F  I  S  P  N  Q  :  Q  S  L  E  T  S  E  R  L  G  L  S  D  D  V  G  A  G  F  I  S  S  H  S  S  Q  S  A  P  T  A  D  L  T  I  E  R  T  I  D  L  P  A  A  D  E  V  S  D  V  G  V  S  K  V  I  R  V  D  Q  K  R  F  F  F  D  L  G  N  N  N  R  G  H  F  L  R  I  S  E  :  V  A  G  S  D  R  S  S  I  I  L  P  L  S  G  L  K  Q  F  Y  D  M  V  G  H  F  V  E  I  S  K  D  R  L  E  G  I  T  G  A  N  V  R  T  I  D  S  P  Q  R  *  L  V  V  *  G  V  E  P  C  T  A  D  N  G  Q  T  S  V  I  P  M  L  I  F  C  L  V  I  V  C  F  K  L  N  K  M  V  S  L  L  *  T  G  N  I  K  S  N  V  N  H  Q  *  E  G  G  I  R  E  *  A  I  M  L  G  E  G  L  *  H  K  M  A  H  S  Y  L  I  S  S  L  L  F  *  V  *  F  K  L  L  L  C  V  R  N  S  P  L  W  L  G  L  N  I  I  L  G  C  C  *  V  W  L  L  N  I  T  N  I  L </first_frame>
            <second_frame>  K  R  N  W  S  T  I  I  S  N  *  N  S  S  S  S  *  N  P  N  S  H  I  C  N  R  I  P  N  S  F  P  *  C  Q  L  Y  H  S  F  L  T  D  Y  F  L  L  F  N  F  *  V  E  V  *  V  I  L  M  E  G  N  S  S  G  G  G  G  G  G  N  D  V  E  L  L  C  K  T  L  Q  V  E  H  K  L  F  Y  F  D  L  K  E  N  P  R  G  R  Y  L  K  I  S  E  K  T  S  A  T  R  S  T  I  I  V  P  F  N  G  I  S  W  F  L  D  L  F  N  Y  Y  V  N  S  D  D  Q  D  V  F  S  K  E  L  Q  L  D  T  K  A  D  Y  Y  I  H  M  S  L  Q  L  L  F  I  F  S  T  V  F  *  N  F  L  *  L  T  S  V  K  G  C  F  L  G  F  F  F  L  H  G  R  C  F  T  L  M  *  E  R  I  G  E  G  A  F  *  R :   S  L  K  H  L  L  A  G  T  V  V  P  L  L  F  Q  Q  E  V  P  G  M  R  D  G  Q  H  L  G  I  F  W  Q  R  L  T  K  P  Q  G  Y  L  F  R  P  I  S :   R  V  W  K  P  Q  S  V  L  G  F  Q  M  M  *  E  L  V  L  Y  P  V  T  L  L  N  L  L  P  Q  L  I  *  L  L  N  G  P  L  I  C  Q  Q  L  T  K  L  V  T  W  G  S  P  K  *  S  G  L  T  R  R  G  S  S  L  I  L  G  I  T  I  G  A  I  S  Y  E  Y  R  R :   *  Q  V  L  T  A  L  Q  *  F  F  P  F  L  A  *  N  N  F  M  T  W  W  V  T  L  *  R  *  A  K  I  A  S  K  E  L  Q  V  Q  M  F  G  Q  L  T  P  H  R  D  D  W  L  S  K  A  W  S  H  V  L  Q  I  M  G  R  R  V  L  F  L  C  *  F  S  A  W  S  L  C  V  S  S  *  I  K  W  Y  H  C  Y  K  L  E  I  *  S  Q  M  S  I  I  N  R  R  G  E  *  E  N  K  P  L  C  *  V  K  D  Y  S  I  K  W  H  T  R  I  *  F  P  L  C  F  F  R  C  D  L  S  F  F  Y  V  *  E  T  L  R  Y  G  L  G  *  T  *  S  *  V  A  A  K  F  G  Y  *  I  S  R  I  F   </second_frame>
            <third_frame>   S  G  T  G  Q  R  L  F  P  T  E  I  P  L  L  H  R  T  L  I  H  T  F  A  I  E  S  P  I  L  F  H  N  A  S  Y  I  I  H  F  S  L  I  I  F  F  C  S  I  F  K  L  K  C  E  *  Y  *  W  R  E  I  R  V  V  A  V  V  V  E  T  T  *  S  Y  C  A  R  R  Y  R  *  N  T  S  F  S  I  S  T  *  R  R  I  H  V  D  D  T  *  K  S  R  R  K  R  R  Q  Q  G  L  L  *  *  Y  H  S  T  A  S  H  G  S  S  I  S  S  I  T  M  S  I  Q  M  T  R  M  S  L  A  K  N  S  N  L  I  P  R  Q  I  I  I  Y  I  C  R  F  S  S  Y  L  S  S  P  L  F  F  K  T  F  Y  D  *  L  L  L  K  V  V  F  L  V  F  F  F  C  T  A  G  V  L  L  *  C  R  R  E  *  A  R  A  L  S  E   : G  L  *  S  I  C  *  Q  E  P  *  Y  H  Y  C  S  S  R  K  C  P  G  *  G  M  G  S  I  *  E  Y  F  G  R  D  *  R  S  L  K  A  I  Y  F  A  Q  S   : A  E  F  G  N  L  R  A  S  W  A  F  R  *  C  R  S  W  F  Y  I  Q  S  L  F  S  I  C  S  H  S  *  F  D  Y  *  T  D  H  *  F  A  S  S  *  R  S  *  *  R  G  G  L  Q  S  N  Q  G  *  P  E  E  V  L  L  *  S  W  E  *  Q  S  G  P  F  L  T  N  I  G   : G  S  R  F  *  P  L  F  N  N  S  S  P  F  W  P  E  T  I  L  *  H  G  G  S  L  C  R  D  K  Q  R  S  P  R  R  N  Y  R  C  K  C  S  D  N  *  L  P  T  E  M  T  G  C  L  R  R  G  A  M  Y  C  R  *  W  A  D  E  C  Y  S  Y  V  N  F  L  P  G  H  C  V  F  Q  V  E  *  N  G  I  T  V  I  N  W  K  Y  K  V  K  C  Q  S  S  I  G  G  G  N  K  R  I  S  H  Y  V  R  *  R  I  I  A  *  N  G  T  L  V  F  N  F  L  F  A  F  L  G  V  I  *  A  S  S  M  C  E  K  L  S  A  M  A  W  A  K  H  N  P  R  L  L  L  S  L  V  I  E  Y  H  E  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139326" stop="139243"/>
                    <exon start="125074" stop="124934"/>
                    <exon start="124842" stop="124603"/>
                    <exon start="124513" stop="124361"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLFSWFFFSARQVFYFDVGENRRGRFLKVSEASVSRNRSTIIVPAGSARDEGWAAFRNILAEINEASRLFISPNQQSLETSERLGLSDDVGAGFISSHSSQSAPTADLTIERTIDLPAADEVSDVGVSKVIRVDQKRFFFDLGNNNRGHFLRISEVAGSDRSSIILPLSGLKQFYDMVGHFVEISKDRLEGITGANVRTIDSPQR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139691" stop="139353"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VILMEGNSSGGGGGGNDVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFNGISWFLDLFNYYVNSDDQDVFSKELQLDTKADYYIHMSLQLLFIFSTVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="135230" e_stop="134392"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="135230" e_stop="134392" e_length="839"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135230" stop="134392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594060" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTCCTGGTAAGGTAAGGCAGAATGGAATTGCTGAGAGGATGAATACAACATTGAATGAGCATGCAAGGAGTATGAGGATACACTGTGGGCTGCCCAAAACACTTTGGGTGGATGCTGTGAGCACAACTGCATACTTGATCAACAGGGGACCATCAGTTCCTTTAGGGTTCAAGATTCCAGAGGAGGTGTGAACAGGAAAAGAACTCAAGTACTCACACTTTAGGACTTTTGGCTGCATTGCTTATGTTCATGTTGATCCAGAAAAGAGAGACAAGCTTGATGCCAAGGCTGTGAAGTGTTACTTCATAGGATATGGTTCTGATTTGCTTGGTTACAGGTTTTGGGATGACAAGAACAGAAAGATCCTGAGACATTGTGACGTGACATTTGATGAGTCTGTCCTGTACAAGGACAGAGAGCAGAAGGTTCTAGAGATTACAAAGCTAGTGGGAGTTGAGGTTGAGTTGGAGAAGAGTAACCCCAGAGATGTCGAAGCAGATACTCAACCAACTCCTACTTAAGAATCTGAAGTGGAGCAAGTTAGACCTGAGCAGGTGTTAAGGAGATCATCCAGATCCATCAAGGCACCAGATAGGTATTCACTTTCATTACACTATCTATTGCTGACTGATGAGGGGGAACCAGAGTCTTTTGATAAGGCCCTACAAGTGGAGGATTTGATCAAGTGGGAGCAAGCCATGGATGATGGGATGAGGTCACTTGAGAAGAACGACACATGGGTGTTGACTGAGTTACCTGCAGGGAAGAGAGTTTTGCTGAACAAGTGGGTGTTCAGAATCAAGACTGAACCAGATGACAAAAGAAGGTTCATGGCTC</gDNA_template>
            <first_frame> S  S  W  *  G  K  A  E  W  N  C  *  E  D  E  Y  N  I  E  *  A  C  K  E  Y  E  D  T  L  W  A  A  Q  N  T  L  G  G  C  C  E  H  N  C  I  L  D  Q  Q  G  T  I  S  S  F  R  V  Q  D  S  R  G  G  V  N  R  K  R  T  Q  V  L  T  L  *  D  F  W  L  H  C  L  C  S  C  *  S  R  K  E  R  Q  A  *  C  Q  G  C  E  V  L  L  H  R  I  W  F  *  F  A  W  L  Q  V  L  G  *  Q  E  Q  K  D  P  E  T  L  *  R  D  I  *  *  V  C  P  V  Q  G  Q  R  A  E  G  S  R  D  Y  K  A  S  G  S  *  G  *  V  G  E  E  *  P  Q  R  C  R  S  R  Y  S  T  N  S  Y  L  R  I  *  S  G  A  S  *  T  *  A  G  V  K  E  I  I  Q  I  H  Q  G  T  R  *  V  F  T  F  I  T  L  S  I  A  D  *  *  G  G  T  R  V  F  *  *  G  P  T  S  G  G  F  D  Q  V  G  A  S  H  G  *  W  D  E  V  T  *  E  E  R  H  M  G  V  D  *  V  T  C  R  E  E  S  F  A  E  Q  V  G  V  Q  N  Q  D  *  T  R  *  Q  K  K  V  H  G   </first_frame>
            <second_frame>  V  P  G  K  V  R  Q  N  G  I  A  E  R  M  N  T  T  L  N  E  H  A  R  S  M  R  I  H  C  G  L  P  K  T  L  W  V  D  A  V  S  T  T  A  Y  L  I  N  R  G  P  S  V  P  L  G  F  K  I  P  E  E  V  *  T  G  K  E  L  K  Y  S  H  F  R  T  F  G  C  I  A  Y  V  H  V  D  P  E  K  R  D  K  L  D  A  K  A  V  K  C  Y  F  I  G  Y  G  S  D  L  L  G  Y  R  F  W  D  D  K  N  R  K  I  L  R  H  C  D  V  T  F  D  E  S  V  L  Y  K  D  R  E  Q  K  V  L  E  I  T  K  L  V  G  V  E  V  E  L  E  K  S  N  P  R  D  V  E  A  D  T  Q  P  T  P  T  *  E  S  E  V  E  Q  V  R  P  E  Q  V  L  R  R  S  S  R  S  I  K  A  P  D  R  Y  S  L  S  L  H  Y  L  L  L  T  D  E  G  E  P  E  S  F  D  K  A  L  Q  V  E  D  L  I  K  W  E  Q  A  M  D  D  G  M  R  S  L  E  K  N  D  T  W  V  L  T  E  L  P  A  G  K  R  V  L  L  N  K  W  V  F  R  I  K  T  E  P  D  D  K  R  R  F  M  A  </second_frame>
            <third_frame>   F  L  V  R  *  G  R  M  E  L  L  R  G  *  I  Q  H  *  M  S  M  Q  G  V  *  G  Y  T  V  G  C  P  K  H  F  G  W  M  L  *  A  Q  L  H  T  *  S  T  G  D  H  Q  F  L  *  G  S  R  F  Q  R  R  C  E  Q  E  K  N  S  S  T  H  T  L  G  L  L  A  A  L  L  M  F  M  L  I  Q  K  R  E  T  S  L  M  P  R  L  *  S  V  T  S  *  D  M  V  L  I  C  L  V  T  G  F  G  M  T  R  T  E  R  S  *  D  I  V  T  *  H  L  M  S  L  S  C  T  R  T  E  S  R  R  F  *  R  L  Q  S  *  W  E  L  R  L  S  W  R  R  V  T  P  E  M  S  K  Q  I  L  N  Q  L  L  L  K  N  L  K  W  S  K  L  D  L  S  R  C  *  G  D  H  P  D  P  S  R  H  Q  I  G  I  H  F  H  Y  T  I  Y  C  *  L  M  R  G  N  Q  S  L  L  I  R  P  Y  K  W  R  I  *  S  S  G  S  K  P  W  M  M  G  *  G  H  L  R  R  T  T  H  G  C  *  L  S  Y  L  Q  G  R  E  F  C  *  T  S  G  C  S  E  S  R  L  N  Q  M  T  K  E  G  S  W  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135037" stop="134708"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGKELKYSHFRTFGCIAYVHVDPEKRDKLDAKAVKCYFIGYGSDLLGYRFWDDKNRKILRHCDVTFDESVLYKDREQKVLEITKLVGVEVELEKSNPRDVEADTQPTPT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134707" stop="134393"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESEVEQVRPEQVLRRSSRSIKAPDRYSLSLHYLLLTDEGEPESFDKALQVEDLIKWEQAMDDGMRSLEKNDTWVLTELPAGKRVLLNKWVFRIKTEPDDKRRFMA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="145145" PGL_stop="146198"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="145145" e_stop="146198"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="145145" e_stop="146198" e_length="1054"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145145" stop="146198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATTTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGAATTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTTAGTACTCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGGGTGCAGCAAACGTGTCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGTTCCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGGTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTCTTTATTAATGAGTTAAGTCTTCCGCATTACTTTCTGTTGTTATTACATTGAAATGTTAAGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAATGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGATATAAGACTTTAGGAAAAATTTCACTCTTTCATTCTTTCCTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGTGGATGGTTAGAACTAGAGCAACGACTGCGCCAACACTAAC</gDNA_template>
            <first_frame> V  T  N  R  H  I  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  F  N  E  H  D  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  F  V  V  A  T  C  *  V  S  *  L  N  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  L  V  L  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  H  R  L  Q  L  N  S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  V  P  S  L  D  W  I  F  F  F  K  S  *  C  L  E  L  P  A  W  T  R  F  L  C  I  F  S  F  *  N  T  L  S  L  V  I  *  S  *  M  F  L  *  *  *  L  P  D  F  G  N  N  R  C  *  I  L  I  V  I  E  L  V  F  F  I  N  E  L  S  L  P  H  Y  F  L  L  L  L  H  *  N  V  K  V  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  R  P  G  F  G  S  *  Q  T  W  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  W  *  G  D  A  F  T  F  P  *  E  D  I  R  L  *  E  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  G  W  L  E  L  E  Q  R  L  R  Q  H  *  </first_frame>
            <second_frame>  S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  I  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  I  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  *  Y  S  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  G  C  S  K  R  V  I  V  F  N  S  T  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  F  L  A  W  T  G  S  S  S  S  S  L  D  A  L  N  F  R  H  G  L  G  S  Y  V  F  L  A  F  R  I  L  L  V  *  S  F  D  R  R  C  S  C  D  D  D  F  Q  I  L  G  I  I  D  V  E  Y  *  *  L  L  N  W  F  S  L  L  M  S  *  V  F  R  I  T  F  C  C  Y  Y  I  E  M  L  R  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  R  G  P  D  L  G  R  D  K  L  G  I  R  A  L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  I  *  D  F  R  K  N  F  T  L  S  F  F  P  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  V  D  G  *  N  *  S  N  D  C  A  N  T  N </second_frame>
            <third_frame>   H  E  P  T  H  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  L  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  I  C  C  C  Y  M  L  S  I  I  V  E  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L  W  G  A  A  N  V  S  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  S  *  L  G  L  D  L  L  L  Q  V  L  M  P  *  T  S  G  M  D  *  V  L  M  Y  F  *  L  L  E  Y  S  *  F  S  H  L  I  V  D  V  L  V  M  M  T  S  R  F  W  E  *  *  M  L  N  I  D  S  Y  *  I  G  F  L  Y  *  *  V  K  S  S  A  L  L  S  V  V  I  T  L  K  C  *  G  *  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  A  A  R  I  W  V  V  T  N  L  V  S  E  H  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  M  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  I  S  L  F  H  S  F  L  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  W  M  V  R  T  R  A  T  T  A  P  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145473" stop="145715"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSCFVLTPTFMFSSCLFVGCSKRVIVFNSTVIQASLTTSEIQGELMFLAWTGSSSSSLDALNFRHGLGSYVFLAFRILLV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145821" stop="146048"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFRITFCCYYIEMLRLDWLVRSHRRVSVGASRGPDLGRDKLGIRALGSLVSSHKNRSSRVLRNGRGTPLLFLERI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="145478" PGL_stop="145150"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="145478" e_stop="145150"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="145478" e_stop="145150" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145478" stop="145150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGTACTAAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAATTCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAAATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATGTGTCGGTTC</gDNA_template>
            <first_frame> R  V  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  N  S  T  M  I  L  N  M  *  Q  Q  Q  I  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  N  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  C  V  G   </first_frame>
            <second_frame>  E  Y  *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  I  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  K  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  V  </second_frame>
            <third_frame>   S  T  K  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  F  N  Y  D  T  Q  H  V  A  T  T  N  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  S  C  S  L  N  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  Q  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  M  C  R  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0256E08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="146268" PGL_stop="148512"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="146268" e_stop="147152"/>
            <exon e_start="147951" e_stop="148512"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.893"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.893">
            <gDNA_exon_boundary e_start="146268" e_stop="147152" e_length="885"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="147153" i_stop="147950" i_length="798"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="147951" e_stop="148512" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146268" stop="147020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146280" stop="147152"/>
              <exon start="147951" stop="148512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTGGAAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAACACCTAGCCCATCTAATACTAGGGCAGTGACACCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAAGATCAAGCACCTCCAGTGTTTTCTGCGCCAACACCTCCGGTTTCAGAAGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGACATAGGCACATTTCCACGTTTGACTACTGGGCCTATAATGACAAATGATCAGCATGAAATTTTCAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTTAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGATTTGGGCCTCATTCTCTAGTTTTTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCAGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCACCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTTGGCCTTATAGATAGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAA : AGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGCAGTTTTCGAATGTGCATAGACTACAGACAACTGAATAAGGTAACCATAAAGAACAAGTACCCTCTTCCCCGCATTGATGACTTGTTCGATTAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGGCATTATGAATTTGTAGTGATGTCCTTTGGTCTTACGAATGCCCCTGCTGCGTGAGAGCTTGATGAACGGGATTTTTAAGCCATATTTGGACCTCTTCGTGATCGTATTTATCGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTAAGAATGGTATTGGAAATGTTAAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGTTTTCTA</gDNA_template>
            <first_frame> P  W  K  R  S  W  E  D  V  L  *  G  K  R  T  N  T  *  P  I  *  Y  *  G  S  D  T  S  T  D  *  G  S  N  K  R  R  G  G  W  G  N  *  T  S  A  K  *  G  N  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  S  R  S  S  T  S  S  V  F  C  A  N  T  S  G  F  R  S  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  H  R  H  I  S  T  F  D  Y  W  A  Y  N  D  K  *  S  A  *  N  F  Q  *  V  L  E  I  E  T  S  G  L  Q  G  C  *  I  G  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  T  V  W  C  G  V  C  D  L  S  V  L  R  E  R  Q  N  V  V  A  V  T  Y  R  V  S  T  N  R  G  T  T  Y  D  L  G  L  I  L  *  F  F  Y  G  E  V  Y  P  P  N  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  S  *  C  L  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  R  A  D  S  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  I  D  S  G  N  G  K  I  L  P  R  S  G  R  L  C  D  R  S  G  R  S  E  :  R  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  A  V  F  E  C  A  *  T  T  D  N  *  I  R  *  P  *  R  T  S  T  L  F  P  A  L  M  T  C  S  I  S  Y  K  V  L  V  S  S  L  R  L  T  *  D  P  V  I  I  N  *  K  Y  G  Q  R  M  C  Q  R  L  L  F  E  R  G  M  G  I  M  N  L  *  *  C  P  L  V  L  R  M  P  L  L  R  E  S  L  M  N  G  I  F  K  P  Y  L  D  L  F  V  I  V  F  I  D  D  I  L  V  Y  S  K  S  K  K  E  H  E  E  H  L  R  M  V  L  E  M  L  R  E  K  K  L  Y  A  K  F  S  K  C  E  F  W  L  D  A  V  S  F  L  G  H  V  F  S  </first_frame>
            <second_frame>  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  T  P  S  P  S  N  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  Q  N  E  E  M  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  D  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  I  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  *  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  I  E  A  P  P  M  I  W  A  S  F  S  S  F  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  H  R  F  V  K  G  L  R  S  E  L  R  I  L  A  L  *  I  A  A  T  A  K  S  F  Q  E  V  V  D  F  V  I  E  V  E  G  V  K :   G  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  E  E  E  G  W  Q  F  S  N  V  H  R  L  Q  T  T  E  *  G  N  H  K  E  Q  V  P  S  S  P  H  *  *  L  V  R  L  V  T  R  C  L  C  L  L  *  D  *  L  E  I  R  L  S  S  I  E  N  T  G  N  G  C  A  K  D  C  F  S  N  E  V  W  A  L  *  I  C  S  D  V  L  W  S  Y  E  C  P  C  C  V  R  A  *  *  T  G  F  L  S  H  I  W  T  S  S  *  S  Y  L  S  M  I  Y  W  Y  T  Q  R  A  R  R  N  M  K  S  I  *  E  W  Y  W  K  C  *  G  R  K  S  F  M  P  S  S  L  S  V  S  F  G  *  M  Q  C  P  S  W  G  T  C  F  L </second_frame>
            <third_frame>   V  E  E  V  V  G  G  R  P  L  G  E  E  D  E  H  L  A  H  L  I  L  G  Q  *  H  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  L  N  K  C  K  M  R  K  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  K  I  K  H  L  Q  C  F  L  R  Q  H  L  R  F  Q  K  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  T  *  A  H  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  K  F  S  V  S  S  *  N  *  N  L  R  S  S  R  V  L  N  R  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  I  S  S  V  N  Q  *  R  H  H  L  *  F  G  P  H  S  L  V  F  L  W  R  S  I  S  P  E  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  Q  L  M  L  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  S  V  S  V  L  K  S  G  F  T  G  L  *  R  G  *  G  Q  N  C  G  F  W  P  Y  R  *  R  Q  R  Q  N  P  S  K  K  W  *  T  L  *  *  K  W  K  E  *   : K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  R  Q  L  N  K  V  T  I  K  N  K  Y  P  L  P  R  I  D  D  L  F  D  *  L  Q  G  A  C  V  F  S  K  I  D  L  R  S  G  Y  H  Q  L  K  I  R  A  T  D  V  P  K  T  A  F  R  T  R  Y  G  H  Y  E  F  V  V  M  S  F  G  L  T  N  A  P  A  A  *  E  L  D  E  R  D  F  *  A  I  F  G  P  L  R  D  R  I  Y  R  *  Y  I  G  I  L  K  E  Q  E  G  T  *  R  A  F  K  N  G  I  G  N  V  K  G  E  K  A  L  C  Q  V  L  *  V  *  V  L  A  R  C  S  V  L  L  G  A  R  V  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146269" stop="146790"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGRGRTSSRGRGRTPSPSNTRAVTPPPTEEVIREGEDGETEQVQNEEMPPQPTPEMINQVLAYLSGLSDQDQAPPVFSAPTPPVSEVQHAATMAPRMDVPLDIGTFPRLTTGPIMTNDQHEIFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146791" stop="147087"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNAKMWWRSHIECQPIEAPPMIWASFSSFFMEKYIPRTLRDRKRDEFLSLEQGRMSVNAYEAKFRALSRYATQLCFSPQERIHRFVKGLRSELRILAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="148266" stop="148511"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CPLVLRMPLLRESLMNGIFKPYLDLFVIVFIDDILVYSKSKKEHEEHLRMVLEMLREKKLYAKFSKCEFWLDAVSFLGHVFS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="146268" e_stop="147129"/>
            <exon e_start="147557" e_stop="148071"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.908"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="146268" e_stop="147129" e_length="862"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="147130" i_stop="147556" i_length="427"/>
          </intron>
          <exon e_serial="2" e_score="0.936">
            <gDNA_exon_boundary e_start="147557" e_stop="148071" e_length="515"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146268" stop="147020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146915" stop="147129"/>
              <exon start="147557" stop="148071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTGGAAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAACACCTAGCCCATCTAATACTAGGGCAGTGACACCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAAGATCAAGCACCTCCAGTGTTTTCTGCGCCAACACCTCCGGTTTCAGAAGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGACATAGGCACATTTCCACGTTTGACTACTGGGCCTATAATGACAAATGATCAGCATGAAATTTTCAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTTAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGATTTGGGCCTCATTCTCTAGTTTTTTTATGGAGAAGTATATCCCCCGAACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCAGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCACCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTTGGCCTTATAGATAGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTT : GATGTTATTCTGGGTATGACTTGGCTTTCGCCGCAATTTGCAATCTTGGATTGTAATGCTAAAACAGTGATGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTACGTATCATCTCTTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGCTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCAGTTTCAGTAGTTCATGAGTTTCTGGATGTGTTCCCTGCAGATCTTCTTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGGATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGCAGTTTTCGAATGTGCATAGACTACAG</gDNA_template>
            <first_frame> P  W  K  R  S  W  E  D  V  L  *  G  K  R  T  N  T  *  P  I  *  Y  *  G  S  D  T  S  T  D  *  G  S  N  K  R  R  G  G  W  G  N  *  T  S  A  K  *  G  N  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  S  R  S  S  T  S  S  V  F  C  A  N  T  S  G  F  R  S  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  H  R  H  I  S  T  F  D  Y  W  A  Y  N  D  K  *  S  A  *  N  F  Q  *  V  L  E  I  E  T  S  G  L  Q  G  C  *  I  G  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  T  V  W  C  G  V  C  D  L  S  V  L  R  E  R  Q  N  V  V  A  V  T  Y  R  V  S  T  N  R  G  T  T  Y  D  L  G  L  I  L  *  F  F  Y  G  E  V  Y  P  P  N  F  E  G  *  E  K  G  *  V  L  E  P  R  A  R  *  D  V  S  *  C  L  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  R  A  D  S  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  I  D  S  G  N  G  K  I  L  P  R  S  G  R  L   : *  C  Y  S  G  Y  D  L  A  F  A  A  I  C  N  L  G  L  *  C  *  N  S  D  V  S  Q  A  W  D  R  P  V  S  V  G  G  *  L  H  F  Q  S  G  T  Y  H  L  F  S  S  C  *  E  N  G  *  *  R  V  L  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  S  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  G  Y  *  L  L  Y  *  S  R  T  G  H  T  P  H  F  Y  T  P  L  *  D  G  S  R  G  V  K  R  V  K  G  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  E  E  E  G  W  Q  F  S  N  V  H  R  L  Q </first_frame>
            <second_frame>  R  G  R  G  R  G  R  T  S  S  R  G  R  G  R  T  P  S  P  S  N  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  Q  N  E  E  M  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  D  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  I  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  *  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  I  E  A  P  P  M  I  W  A  S  F  S  S  F  F  M  E  K  Y  I  P  R  T  L  R  D  R  K  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  H  R  F  V  K  G  L  R  S  E  L  R  I  L  A  L  *  I  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  M  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  H  E  F  L  D  V  F  P  A  D  L  L  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y   </second_frame>
            <third_frame>   V  E  E  V  V  G  G  R  P  L  G  E  E  D  E  H  L  A  H  L  I  L  G  Q  *  H  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  L  N  K  C  K  M  R  K  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  K  I  K  H  L  Q  C  F  L  R  Q  H  L  R  F  Q  K  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  T  *  A  H  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  K  F  S  V  S  S  *  N  *  N  L  R  S  S  R  V  L  N  R  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  I  S  S  V  N  Q  *  R  H  H  L  *  F  G  P  H  S  L  V  F  L  W  R  S  I  S  P  E  L  *  G  I  G  K  G  M  S  S  *  A  *  S  K  V  G  C  Q  L  M  L  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  S  V  S  V  L  K  S  G  F  T  G  L  *  R  G  *  G  Q  N  C  G  F  W  P  Y  R  *  R  Q  R  Q  N  P  S  K  K  W  *  T  L :   M  L  F  W  V  *  L  G  F  R  R  N  L  Q  S  W  I  V  M  L  K  Q  *  C  *  P  S  L  G  Q  T  R  *  C  G  R  V  T  T  L  P  I  R  Y  V  S  S  L  F  F  V  L  R  K  W  L  V  K  G  A  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  Q  F  Q  *  F  M  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  V  L  I  S  N  R  A  H  A  P  F  L  Y  P  L  I  G  W  L  P  R  S  *  E  S  *  R  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  A  V  F  E  C  A  *  T  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="147088" stop="147129"/>
                    <exon start="147557" stop="148069"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAATAKSFQEVVDFDVILGMTWLSPQFAILDCNAKTVMLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVHEFLDVFPADLLGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146269" stop="146790"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGRGRGRTSSRGRGRTPSPSNTRAVTPPPTEEVIREGEDGETEQVQNEEMPPQPTPEMINQVLAYLSGLSDQDQAPPVFSAPTPPVSEVQHAATMAPRMDVPLDIGTFPRLTTGPIMTNDQHEIFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146791" stop="147087"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNAKMWWRSHIECQPIEAPPMIWASFSSFFMEKYIPRTLRDRKRDEFLSLEQGRMSVNAYEAKFRALSRYATQLCFSPQERIHRFVKGLRSELRILAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="148641" PGL_stop="147831"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="148641" e_stop="147831"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="148641" e_stop="147831" e_length="811"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="148641" stop="147831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAATACAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAAACACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTTAACATTTCCAATACCATTCTTAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCGATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCTCACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCATAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTCATCAATGCGGGGAAGAGGGTACTTGTTCTTTATGGTTACCTTATTCAGTTGTCTGTAGTCTATGCACATTCGAAAACTGCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATCCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAAGAAGATCTG</gDNA_template>
            <first_frame> R  I  P  *  Q  I  D  G  S  S  *  L  I  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  T  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  L  T  F  P  I  P  F  L  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  R  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  H  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  R  R  S  </first_frame>
            <second_frame>  E  S  L  D  K  S  T  V  V  A  S  *  Y  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  K  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  *  H  F  Q  Y  H  S  *  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  D  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  L  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  H  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  N  R  T  S  H  Q  C  G  E  E  G  T  C  S  L  W  L  P  Y  S  V  V  C  S  L  C  T  F  E  N  C  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  P  L  T  L  L  T  P  R  E  P  S  Y  K  G  V  *  K  W  G  V  C  P  V  R  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L </second_frame>
            <third_frame>   N  P  L  T  N  R  R  *  *  L  A  N  T  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  N  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  S  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  I  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  G  K  R  V  L  V  L  Y  G  Y  L  I  Q  L  S  V  V  Y  A  H  S  K  T  A  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  R  G  S  H  P  I  R  G  Y  R  N  G  A  C  A  R  F  E  I  N  T  E  V  N  I  P  I  R  W  H  T  K  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="148444" stop="148139"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLSRSRGIRKTKGHHYKFIMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="149906" PGL_stop="149413"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="149906" e_stop="149413"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="149906" e_stop="149413" e_length="494"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="149906" stop="149413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCAATTCTGCATGCAATGTTTTCCAAAACTTAGAAGTAAATTGTGTACCTCTATCTGATATGATGGATAGTGGAACCCCATGCAATCGAACGATTTCTGAGATATAGATCTTGGCTAACTTCTCGGCATTGTAAGTCACCTTAACCGGAATAAAATGAGCAGATTTAGTTAACCTATCAACAATCACCCAAATGGAGTCATACTTACCCATTGTCTTCGGAAGACCAACCACAAAATCCATTGCAATTCTTTCCCACTTCCATTACGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACACTTGGCAATAAAGTCAACAAATATCACGCTTCATTCTACTCCACCAAAAGTGCTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGAATGTATCGAATACTTTGAACTATGAGCCTCTGTCAGAATAGTGTTAATCAAATCATCAACTCGGGGT</gDNA_template>
            <first_frame> T  Q  F  C  M  Q  C  F  P  K  L  R  S  K  L  C  T  S  I  *  Y  D  G  *  W  N  P  M  Q  S  N  D  F  *  D  I  D  L  G  *  L  L  G  I  V  S  H  L  N  R  N  K  M  S  R  F  S  *  P  I  N  N  H  P  N  G  V  I  L  T  H  C  L  R  K  T  N  H  K  I  H  C  N  S  F  P  L  P  L  R  N  G  H  S  L  K  C  S  S  G  P  L  V  F  I  L  Y  L  L  T  V  W  T  L  G  N  K  V  N  K  Y  H  A  S  F  Y  S  T  K  S  A  A  L  G  H  G  T  S  W  L  H  P  N  V  S  N  T  L  N  Y  E  P  L  S  E  *  C  *  S  N  H  Q  L  G   </first_frame>
            <second_frame>  P  N  S  A  C  N  V  F  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  D  S  G  T  P  C  N  R  T  I  S  E  I  *  I  L  A  N  F  S  A  L  *  V  T  L  T  G  I  K  *  A  D  L  V  N  L  S  T  I  T  Q  M  E  S  Y  L  P  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  Y  G  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  L  A  I  K  S  T  N  I  T  L  H  S  T  P  P  K  V  L  L  *  V  T  V  H  L  G  C  T  R  M  Y  R  I  L  *  T  M  S  L  C  Q  N  S  V  N  Q  I  I  N  S  G  </second_frame>
            <third_frame>   P  I  L  H  A  M  F  S  K  T  *  K  *  I  V  Y  L  Y  L  I  *  W  I  V  E  P  H  A  I  E  R  F  L  R  Y  R  S  W  L  T  S  R  H  C  K  S  P  *  P  E  *  N  E  Q  I  *  L  T  Y  Q  Q  S  P  K  W  S  H  T  Y  P  L  S  S  E  D  Q  P  Q  N  P  L  Q  F  F  P  T  S  I  T  E  W  A  F  S  E  V  F  L  R  A  F  G  V  H  T  L  L  V  D  S  L  D  T  W  Q  *  S  Q  Q  I  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  E  C  I  E  Y  F  E  L  *  A  S  V  R  I  V  L  I  K  S  S  T  R  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0256E08.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="149732" stop="149439"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PINNHPNGVILTHCLRKTNHKIHCNSFPLPLRNGHSLKCSSGPLVFILYLLTVWTLGNKVNKYHASFYSTKSAALGHGTSWLHPNVSNTLNYEPLSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="150121" PGL_stop="149945"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="150121" e_stop="149945"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="150121" e_stop="149945" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150121" stop="149945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAGATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  D  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  *  I  S  Y  H  T  M  L  Q  M  G  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  D  H  Q  T  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   R  S  P  T  I  Q  C  F  K  W  G  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0256E08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="151458" PGL_stop="151603"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="151458" e_stop="151603"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="151458" e_stop="151603" e_length="146"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151458" stop="151603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTGTAAACCCTACTATATGCTTAATGGTATGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTAAA</gDNA_template>
            <first_frame> Y  C  K  P  Y  Y  M  L  N  G  M  F  A  *  I  *  L  C  D  C  D  K  I  S  M  M  K  I  L  N  P  K  S  *  K  E  T  L  I  Y  I  I  N  D  D  A  L  V   </first_frame>
            <second_frame>  I  V  N  P  T  I  C  L  M  V  C  L  H  E  Y  D  Y  V  I  V  I  R  *  A  *  *  K  Y  *  I  P  N  L  E  K  K  L  *  Y  T  L  L  M  M  M  P  W  *  </second_frame>
            <third_frame>   L  *  T  L  L  Y  A  *  W  Y  V  C  M  N  M  I  M  *  L  *  *  D  K  H  D  E  N  I  E  S  Q  I  L  K  R  N  F  N  I  H  Y  *  *  *  C  L  G  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0256E08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 155 chains have been computed
$ 
$ memory statistics:
$ 884928 bytes spliced alignments in total
$ 28 spliced alignments have been stored
$ 31604 bytes was the average size of a spliced alignment
$ 27304 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1437 bytes was the average size of a predicted gene location
$ 7 megabytes was the average size of the backtrace matrix
$ 187 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 07:46:39
-->
