<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 07:16:38"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0159C14-xzehx/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0159C14-xzehx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0159C14-xzehx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="cLPT-5-M7" ref_strand="+" ref_description="cLPT-5-M7">
      <seq>ctttttctccattttcaagtactanaaagttcggtgatggtatggcatcttttctgaaagcaacccactttattcactccagtaacaaccatcaaaatcatccattttctcagtcctatacccaaacaatcaaaatttcaacttctcgcaaacctctaatggctgccctcagcgccacagcaacagttggactttctgagactttcactcgattgaaggaacaaggcaaggtggcacttattccatacatcactgctggagatcctgacctggcaacaactgcagaagcactgaaagtgctggatagatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0159C14-xzehx/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0159C14.1" temp_strand="+" temp_description="C01HBa0159C14.1  AC225024.1 htgs_phase:3 submitted_to_sgn_as:Contig12 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.1 from 31 to 123709">
        <position start="22957" stop="24306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23257" g_stop="23487" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23488" i_stop="23924" i_length="437">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23925" g_stop="24006" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="312" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0159C14.1" gen_strand="+" ref_id="cLPT-5-M7" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0159C14.1" gen_strand="+"/>
        <rDNA rDNA_id="cLPT-5-M7" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23257" e_stop="23487"/>
          <exon e_start="23925" e_stop="24006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTCCATTTTCAAGTAGAAAGAAGGTTCGGTGATGGTATGGCATCTTTTCTGAAAGCAACCCACTTTATTCACTCCAGTAACAATCATCAAAATCATCCATTTTCTCAGTCCTATACCCAAACAATCAAAATTTCAACTTCTCGCAAACCTCTAATGGCTGCCCTCAGCGCCACAGCAACAGTTGGACTTTCTGAGACTTTCACTCGATTGAAGGAACAAGGCAAGGTATCACATTCCACTCCTCATTCTTCTTCTTTCCTCACAAAAAAAAAGGTTCCCCCTTATCTTACTATCACTTTTATTTGTATTTCTTTTACCATCTTAGTTTTAGAAGATTAATTAATGTGGGTATTGATCAGAATTTGGTGAAATGATTGGATAATGATGGAAAAAGTGTAATTCATACAGAAATATTCTCTTCTTGTGTGTGATTTAGTTTCCTTTGGGAAAGATTTTATATGGAACTATGAAATTTATTGATTAGGGCAGTTTATCCCAAAAAAAATCCAACTTTTGTTTTATAGAGGTCGAATTTCTATTTTGAACATTGATTTAGTGGAAAGTAACAATCAAGTGGAATGTTTTCATGTTTTTTCACAATGATCGACCATAGCTTTATTATCTCTGATTTTTTAATGAAACTCACATTTTTTGTTGCAAAGGTGGCACTTATTCCATACATCACTGCTGGAGATCCTGACCTGGCAACAACTGCAGAAGCACTGAAAGTGCTGGATAGATGTG</genome_strand>
        <mrna_strand>CTTTTTCTCCATTTTCAAGTA-CTANAAAGTTCGGTGATGGTATGGCATCTTTTCTGAAAGCAACCCACTTTATTCACTCCAGTAACAACCATCAAAATCATCCATTTTCTCAGTCCTATACCCAAACAATCAAAATTTCAACTTCTCGCAAACCTCTAATGGCTGCCCTCAGCGCCACAGCAACAGTTGGACTTTCTGAGACTTTCACTCGATTGAAGGAACAAGGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCACTTATTCCATACATCACTGCTGGAGATCCTGACCTGGCAACAACTGCAGAAGCACTGAAAGTGCTGGATAGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0159C14-xzehx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="U237757" ref_strand="+" ref_description="U237757">
      <seq>caaattcaagacccacaatttcttttacaaaacaatcaaaggaagacgaaccatgataaacagcacaactgaaagcacagacgttccaacacaaaagtaccacctaccaaagcgtataatcttggtccgtcacggcgagagccaagggaacaaggacgatgcagcatacggcgtaaccccagattacaaaatccctttgacggctcaagggattgaacaagcaaaacaagctggctcccggattcttgatgttgtttccggccatgggtcgtcggacaactggaaggtttacttctatgtctctccttacgtgcgcacgcgctccacgctccgggagattggccgggcattcccgaagaataggatgcttggggttagagaagagtgcagagttagagaacaagattttgggaattttcaagtcgctgagcgtatgaaagtgattaaggaaactcgggagaaattcgggagattcttctatcggtttccggaaggcgaatcggctgctgatgtttatgatcgagtttcccatttccttgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0159C14-xzehx/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0159C14.1" temp_strand="+" temp_description="C01HBa0159C14.1  AC225024.1 htgs_phase:3 submitted_to_sgn_as:Contig12 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.1 from 31 to 123709">
        <position start="50958" stop="52089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51258" g_stop="51787" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0159C14.1" gen_strand="+" ref_id="U237757" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0159C14.1" gen_strand="+"/>
        <rDNA rDNA_id="U237757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51258" e_stop="51787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCAAGACCCACAATTTCTTTTACAAAACAATCAAAGGAAGACGAACCATGATAAACAGCACAACTGAAAGCACAGACGTTCCAACACAAAAGTACCACCTACCAAAGCGTATAATCTTGGTCCGTCACGGCGAGAGCCAAGGGAACAAGGACGATGCAGCATACGGCGTAACCCCAGATTACAAAATCCCTTTGACGGCTCAAGGGATTGAACAAGCAAAACAAGCTGGCTCCCGGATTCTTGATGTTGTTTCCGGCCATGGGTCGTCGGACAACTGGAAGGTTTACTTCTATGTCTCTCCTTACGTGCGCACGCGCTCCACGCTCCGGGAGATTGGCCGGGCATTCCCGAAGAATAGGATGCTTGGGGTTAGAGAAGAGTGCAGAGTTAGAGAACAAGATTTTGGGAATTTTCAAGTCGCTGAGCGTATGAAAGTGATTAAGGAAACTCGGGAGAAATTCGGGAGATTCTTCTATCGGTTTCCGGAAGGCGAATCGGCTGCTGATGTTTATGATCGAGTTTCCC</genome_strand>
        <mrna_strand>CAAATTCAAGACCCACAATTTCTTTTACAAAACAATCAAAGGAAGACGAACCATGATAAACAGCACAACTGAAAGCACAGACGTTCCAACACAAAAGTACCACCTACCAAAGCGTATAATCTTGGTCCGTCACGGCGAGAGCCAAGGGAACAAGGACGATGCAGCATACGGCGTAACCCCAGATTACAAAATCCCTTTGACGGCTCAAGGGATTGAACAAGCAAAACAAGCTGGCTCCCGGATTCTTGATGTTGTTTCCGGCCATGGGTCGTCGGACAACTGGAAGGTTTACTTCTATGTCTCTCCTTACGTGCGCACGCGCTCCACGCTCCGGGAGATTGGCCGGGCATTCCCGAAGAATAGGATGCTTGGGGTTAGAGAAGAGTGCAGAGTTAGAGAACAAGATTTTGGGAATTTTCAAGTCGCTGAGCGTATGAAAGTGATTAAGGAAACTCGGGAGAAATTCGGGAGATTCTTCTATCGGTTTCCGGAAGGCGAATCGGCTGCTGATGTTTATGATCGAGTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0159C14-xzehx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g27380" ref_strand="+" ref_description="C2_At5g27380">
      <seq>cggctgttcttctccatcaatctcactaactaccatcgctacctctcattttcaatcccaagaatcactatcaaactctttaaatttctactcacctactagatttttggaaccccatctccttaaatcttccaagattttcatacccaaatccccattgaagtgtgctaaagtgcccgaaatgcagacccaactggaagattctgcgaaacccattgtcgatcctcatgatatcgactcaaaattggtgcagaagcttgctaatgatgcacttgtctggtgctctcttcgtggacttcttgttggtgacagaaattcggagaggtcaggaactattcctggtgttgatatggttcatgctccagttgctctcataccaatgtcatttcctgaaagtcattggaagcaagcttgtgaagttgctcctattttcaatgaactcgtggatcgcgtgagtcaggatggagaatttctgcagcaatcactgtctaggacgagaaaagctgatcctttcacctccagattactagaaatccactccaagatgttagaaatcaacaagctagaggaaatacgcttggggttgcatcgctcagactatatgctggatgagcaaacgaaattacttttgcaaatagagcttaacacaatctcatcatcatttccagggctaagttgtctggtcagcgagcttcacaggagcttgcttcaacaatacagagaagacattgcatcagatcctaacagaattcccgcaaacaatgctgtaaatcaatttgctgaagcattggctaaagcttggaatgaatatggtgatccaagggctgtgattatttttgtggttcaagctgaagagcgcaatatgtatgaccagcattggctttctgcatcattgagagaaagacatcaagttacaactatcagaaagacgctggctgaaattgatgcacttggcgagcttcaacaagatggtacccttgttgtagatggtcaagctgtggcagtcatttattttagagctggctatgcaccaagtgactatcactcggaatctgagtggaaagctaggctgctgatggagcaatcacgtgcagtcaagtgcccttcaatttcttatcatttagctggcagcaagaagattcagcaagagcttgcaaagcccaatgtacttgaaaggtttctggaaaacaaagatgacattgccaaactacggaaatgctttgcagggttgtggagcttggatgaatccgacattgtcaaggatgcaattgagaggcctgaattgtatgttatgaaaccacaacgagaaggaggaggaaacaatatctatggggaggatgtcagaggtgctcttttgaaactgcaaaaggaaggcactggaagtgatgcagcctacatactaatgcagaggattttcccgaagatctctcactcgatactaatgcgagaaggcatctctcataaagaagaaaccatatcagaacttgggatatatggtacctatttaaggaacaaaacggaagttttaatcaaccaacaggctggttacttgatgcgaacaaaggtctcttcatcagatgaggggggagttgcagccgggtttgcagttttggacagtatatacttggtttgatggaattgtcttgcgcgttgacactataacaatggttgaatgcagaagctggacaagtcatttcctacattatgttgagacaccatgctttagcctgtttaacctttccttgttttacattgtatttttcttgcttaacatctttaataaatagagctccacatctgaaggaagtgaccaaaagaatggtatagtcaattcaaagtgtttgcttgcaattttaacctattcagtgtttggactctttgttaccacaggagcttttactgttctgttcattacatgtaattctgtttcacttttgttagtactaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0159C14-xzehx/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0159C14.1" temp_strand="-" temp_description="C01HBa0159C14.1  AC225024.1 htgs_phase:3 submitted_to_sgn_as:Contig12 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.1 from 31 to 123709">
        <position start="69950" stop="64187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69650" g_stop="69329" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69328" i_stop="69112" i_length="217">
            <donor d_prob="0.777" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69111" g_stop="68942" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="492" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68941" i_stop="68803" i_length="139">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68802" g_stop="68727" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="568" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68726" i_stop="68298" i_length="429">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68297" g_stop="68167" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="699" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68166" i_stop="67824" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67823" g_stop="67701" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="822" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67700" i_stop="67619" i_length="82">
            <donor d_prob="0.815" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67618" g_stop="67538" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="823" r_stop="903" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67537" i_stop="67352" i_length="186">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67351" g_stop="67271" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="904" r_stop="984" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67270" i_stop="67184" i_length="87">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.793" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67183" g_stop="67114" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="985" r_stop="1054" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="67113" i_stop="66167" i_length="947">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66166" g_stop="66045" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1055" r_stop="1176" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="66044" i_stop="65623" i_length="422">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="65622" g_stop="65483" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1177" r_stop="1316" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="65482" i_stop="65405" i_length="78">
            <donor d_prob="0.622" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="65404" g_stop="65212" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1317" r_stop="1509" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="65211" i_stop="64930" i_length="282">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="64929" g_stop="64481" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1510" r_stop="1958" r_length="449" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0159C14.1" gen_strand="-" ref_id="C2_At5g27380" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1958</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0159C14.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At5g27380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69650" e_stop="69329"/>
          <exon e_start="69111" e_stop="68942"/>
          <exon e_start="68802" e_stop="68727"/>
          <exon e_start="68297" e_stop="68167"/>
          <exon e_start="67823" e_stop="67701"/>
          <exon e_start="67618" e_stop="67538"/>
          <exon e_start="67351" e_stop="67271"/>
          <exon e_start="67183" e_stop="67114"/>
          <exon e_start="66166" e_stop="66045"/>
          <exon e_start="65622" e_stop="65483"/>
          <exon e_start="65404" e_stop="65212"/>
          <exon e_start="64929" e_stop="64481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTGTTCTTCTCCATCAATCTCACTAACTACCATCGCTACCTCTCATTTTCAATCCCAAGAATCACTATCAAACTCTTTAAATTTCTACTCACCTACTAGATTTTTGGAACCCCATCTCCTTAAATCTTCCAAGATTTTCATACCCAAATCCCCATTGAAGTGTGCTAAAGTGCCCGAAATGCAGACCCAACTGGAAGATTCTGCGAAACCCATTGTCGATCCTCATGATATCGACTCAAAATTGGTGCAGAAGCTTGCTAATGATGCACTTGTCTGGTGCTCTCTTCGTGGACTTCTTGTTGGTGACAGAAATTCGGAGGTCAGTCTTTATGGCAATAGATAATCTTTTTACATCACAGAGACATAAGTTTGTGATACTGAATTATTTATGAAAAGATCAGATTTTCTTGATTTCTTTTTACTATTTGATTAAAGTTTGGTGCTTTATTTTCCTTTTCTCTTCTGTTCATCAAGAAGGTGGTTAGGTGTTATTGTTATTGCTTTCATGTGATATTTGTGCCTTTTGAAATTTGAAGAGGTCAGGAACTATTCCTGGTGTTGATATGGTTCATGCTCCAGTTGCTCTCATACCAATGTCATTTCCTGAAAGTCATTGGAAGCAAGCTTGTGAAGTTGCTCCTATTTTCAATGAACTCGTGGATCGCGTGAGTCAGGATGGAGAATTTCTGCAGCAATCACTGTCTAGGTTGGTACACATAATTGCTTCTGTATTTGCTGTTTACTGAAAACATGTACTGGAACAGAATACCCAACTCTCTAGTAAGTTGGAAGAAATAATGGTAGTTCTATTGGAAGTTTATGAAGCTTAATGCAATTTTCTGCAGGACGAGAAAAGCTGATCCTTTCACCTCCAGATTACTAGAAATCCACTCCAAGATGTTAGAAATCAACAAGCTAGAGGTACATCTTGATATCTTACAATTTTAATTTCAAGATATGTGTGTACAACATCTGTCAGCTCTTTATATAATGACATTTCTTTTCTATTCTTTAATCTTTGTTAGACTTGTTCTGTCGTTTTGGGTTGACATACGATTTTGATATTCCTAATACGTGATATCAATCACCATGATTTTGATTGACCCCTTCGTCATTGGACTTGGTCTTACCTAATTTGCATGATAGTAATAAAAAATTTCCCTGTTGCTTTAGATGTTGCCATATTTGATCATCAGGAATGGAGAAGCTGTCATGTATTTCTTCGTCTTCAATCGTTATAAGAAGGCCTTATCCAATTATGTGCCTAAGTCGGCTTATATTAGTTGTAGGAGTATTTTATTGTTTCTTTGTGTAGGAGAGAATTTCCCATTTGATATGACATTGATGTAGGAAATACGCTTGGGGTTGCATCGCTCAGACTATATGCTGGATGAGCAAACGAAATTACTTTTGCAAATAGAGCTTAACACAATCTCATCATCATTTCCAGGGCTAAGTTGTCTGGTCAGCGAGCTTCACAGGTAAAATAATGAAATGCATTGTAATATCCTTATCAAAAAAAAAATTCAAAAACTTGGAGCAAGTAACAAAAACCTTCAAGGGCTCTAAACAAGCAGCTAATGATATCTGCAGTACAGTTGGGTAAATGGGGTGTTATAGGACAATCTGGCATCGATGCTCACTATCCAGAACTTCTGTTTTAATTTTATCAAGTTATTTCTAGGATTTTTGTTTTATGATGAAATCTTCAGTGTATGCAACTATGCATGTGTAATTATTGAAAAGATAACTTCAGATCGTAAAACTTCTAGCTCTTTCTCCTCTAAAGCGCATATAGAACTTGATATTAACTGTCGTTTACAGGAGCTTGCTTCAACAATACAGAGAAGACATTGCATCAGATCCTAACAGAATTCCCGCAAACAATGCTGTAAATCAATTTGCTGAAGCATTGGCTAAAGCTTGGAATGAATATGGTGATCCAAGGTCGATTTGATCTGTGAGATTTTTTGCTTAATTTTAGAAAGTAGGTCTTTGAAGTTGTACTAACGTTTAATACATATTGCAGGGCTGTGATTATTTTTGTGGTTCAAGCTGAAGAGCGCAATATGTATGACCAGCATTGGCTTTCTGCATCATTGAGAGAAAGATATCCTACTTCAAATGATAGATATGGATTTAATGTACTTATCATGGATCTAATAAAAGGCATATAGCCATATTTAAGACACAATATTATCTTGGTCTGAAGTAACAAAAATGCATTCTGTGTAGTACATCTGCTGTGATTTTTGCTTCTAAATTCTCCTAAAGATATTTCCTAAGCTTATAACACACATCAAGTTACAACTATCAGAAAGACGCTGGCTGAAATTGATGCACTTGGCGAGCTTCAACAAGATGGTACCCTTGTTGTGTATGTAACTTTTCTACCAAAATACTGTGTTAAAGCTGTTAATTTTGCACTTTCTGTATGGGAAGCTTAAAATCTTTAGGATTGCAGAGATGGTCAAGCTGTGGCAGTCATTTATTTTAGAGCTGGCTATGCACCAAGTGACTATCACTCGGAATCTGTAAGATTATTTTTATAGTGCTTGACTATGGGTTTTATAAAACTACTGGCTTACTTTAAAATTCCTATGCTCATATGTGCAATAACCACTATTTGCTGAGTTTAGAGGTGGATTCCCTCTGTACAGTCAGAATTTTACATGGCTCGATTTGTTTGATAAATGTATCTGTTAGTATCTTTATGAATCACCATCTCATGCCATTTAACAATTCTTATCGAGTCTGTAAATACCTGAAACGAAGAAAAGGAATAAGCAATTCCTTATTTAAAAGAAAAAGGAGAAAACAGTTCCAAGGGGGAACCTGTCTGGTAAAAAAACAGTGGGCAGGTTATTCCCTAGTTTAGCAGGTATACTGTAGATCAGAACTTCTTAGATAGGGAGGTGAGAGAAAACAAAATAAGGGCTGTTTAGCACTGATCACTGGCTGAGGAGTAGTCAACTTTAGTTTTCAGAGTCCAAAATAAGAGTAGCCTATTTCATACACTTGTGACGAGATTCCCATGTTTTTGACATGTCATGGGGGTAAAAGCATTTTAAACAAAGTTAATGAACTCCATATTATAAGGCATTGCATTCTCCTGGTAAGTAAATGGAAGCAAAAAAATTTGATAACCAATTGAAATAGAACTGTTTGGATGTTTAATTCAGGATGATATGCCCTGATCATTTTCATTGAACAGTTAAAAGGCAGTCTCTGGTTCTTTTAGTTAGTCTTATGGACATTACTTTCTGCAAAACCTTTTGAAAGCATCTCTAAGTTGTGCACACACGTTTTTGGTTAGAGGCAGGTTTGATTCATAATTACTGTTCAATATTTGAGATTATGGAAGTGGCCCAACTAGAGAGATCGGCCATTTACTGTTGCATCTCGTTGTGATCTCCACTTAGTTATAAAGTTCCCAGTTAGCTATCGTCTTGCTTGATCTGTTTTATGCAATTTATCGTAGGAGTGGAAAGCTAGGCTGCTGATGGAGCAATCACGTGCAGTCAAGTGCCCTTCAATTTCTTATCATTTAGCTGGCAGCAAGAAGATTCAGCAAGAGCTTGCAAAGCCCAATGTACTTGAAAGGTAAAAGCTTAACTCAAGTTGCGTCTCTTGTGATTCAGTAATTAGTAAACTTAGTGTGTTGATAAGCTCAAAAGCTGTCTATACAAGTGTTAAAATTTGAGTCTGGATAATTGTTTGGGATCTTCCCTCTTCCTCTCTGTAACGGGGTTCTGGAAAGGCAGAACTTAATGCATTTAGTGCTTTATAAACTGATTGTGATTAATATTGTCATTCTGTTGCTCTCTTTTCCTGTGGTGCAAAAAGAAGGTAAAAAAATAGATGTCTAATTTAACAAGATACAAAAACCCAGACAGTTTGAAGTAGAACGTTTCGTATAATTTGTAAGTTGGGGAGCATAATGAATACAGTTATGCAGTCATTGAGAAATTAACTTTTCCTAATATTCTATGATTTGGTAAACTTCCGTCCTTGTTTATGAGCAGGTTTCTGGAAAACAAAGATGACATTGCCAAACTACGGAAATGCTTTGCAGGGTTGTGGAGCTTGGATGAATCCGACATTGTCAAGGATGCAATTGAGAGGCCTGAATTGTATGTTATGAAACCACAACGAGAAGGAGGAGGTCTGGCTCAGGAAATTGACTGTCTATATTGTAACTACACATCAAAATCATTAATACTAGATCCTCTTCTCACCGCAGGAAACAATATCTATGGGGAGGATGTCAGAGGTGCTCTTTTGAAACTGCAAAAGGAAGGCACTGGAAGTGATGCAGCCTACATACTAATGCAGAGGATTTTCCCGAAGATCTCTCACTCGATACTAATGCGAGAAGGCATCTCTCATAAAGAAGAAACCATATCAGAACTTGGGATATATGGTACCTATTTAAGGTAAAAGTGAATATGCTGTATTCCATCCCCATGGACCCCCCCCCCCAAAAAAAAAATTATGAAAAAGAGTAACTGCCAGAAAGGAGAAACATTGAAACAACCATTTTACCTTGGCACGTTCCAGTCCCTGCTTTCAGCTTATGTTTGAATCATAGAATGATGTTACAAGGGATGCAGATTATTGAATAACAAATGAGCAAGAATGAATTTTTTTAGTAAACCTAAGTTTTAAAATCATCGTTGCCCTTTAACATCATGTGCTGATATGCACTTAATATGCAGGAACAAAACGGAAGTTTTAATCAACCAACAGGCTGGTTACTTGATGCGAACAAAGGTCTCTTCATCAGATGAGGGGGGAGTTGCAGCCGGGTTTGCAGTTTTGGACAGTATATACTTGGTTTGATGGAATTGTCTTGCGCGTTGACACTATAACAATGGTTGAATGCAGAAGCTGGACAAGTCATTTCCTACATTATGTTGAGACACCATGCTTTAGCCTGTTTAACCTTTCCTTGTTTTACATTGTATTTTTCTTGCTTAACATCTTTAATAAATAGAGCTCCACATCTGAAGGAAGTGACCAAAAGAATGGTATAGTCAATTCAAAGTGTTTGCTTGCAATTTTAACCTATTCAGTGTTTGGACTCTTTGTTACCACAGGAGCTTTTACTGTTCTGTTCATTACATGTAATTCTGTTTCACTTTTGTTAGTACTATCAAGATTGCTC</genome_strand>
        <mrna_strand>CGGCTGTTCTTCTCCATCAATCTCACTAACTACCATCGCTACCTCTCATTTTCAATCCCAAGAATCACTATCAAACTCTTTAAATTTCTACTCACCTACTAGATTTTTGGAACCCCATCTCCTTAAATCTTCCAAGATTTTCATACCCAAATCCCCATTGAAGTGTGCTAAAGTGCCCGAAATGCAGACCCAACTGGAAGATTCTGCGAAACCCATTGTCGATCCTCATGATATCGACTCAAAATTGGTGCAGAAGCTTGCTAATGATGCACTTGTCTGGTGCTCTCTTCGTGGACTTCTTGTTGGTGACAGAAATTCGGAG.........................................................................................................................................................................................................................AGGTCAGGAACTATTCCTGGTGTTGATATGGTTCATGCTCCAGTTGCTCTCATACCAATGTCATTTCCTGAAAGTCATTGGAAGCAAGCTTGTGAAGTTGCTCCTATTTTCAATGAACTCGTGGATCGCGTGAGTCAGGATGGAGAATTTCTGCAGCAATCACTGTCTAG...........................................................................................................................................GACGAGAAAAGCTGATCCTTTCACCTCCAGATTACTAGAAATCCACTCCAAGATGTTAGAAATCAACAAGCTAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATACGCTTGGGGTTGCATCGCTCAGACTATATGCTGGATGAGCAAACGAAATTACTTTTGCAAATAGAGCTTAACACAATCTCATCATCATTTCCAGGGCTAAGTTGTCTGGTCAGCGAGCTTCACAG.......................................................................................................................................................................................................................................................................................................................................................GAGCTTGCTTCAACAATACAGAGAAGACATTGCATCAGATCCTAACAGAATTCCCGCAAACAATGCTGTAAATCAATTTGCTGAAGCATTGGCTAAAGCTTGGAATGAATATGGTGATCCAAG..................................................................................GGCTGTGATTATTTTTGTGGTTCAAGCTGAAGAGCGCAATATGTATGACCAGCATTGGCTTTCTGCATCATTGAGAGAAAG..........................................................................................................................................................................................ACATCAAGTTACAACTATCAGAAAGACGCTGGCTGAAATTGATGCACTTGGCGAGCTTCAACAAGATGGTACCCTTGTTGT.......................................................................................AGATGGTCAAGCTGTGGCAGTCATTTATTTTAGAGCTGGCTATGCACCAAGTGACTATCACTCGGAATCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGGAAAGCTAGGCTGCTGATGGAGCAATCACGTGCAGTCAAGTGCCCTTCAATTTCTTATCATTTAGCTGGCAGCAAGAAGATTCAGCAAGAGCTTGCAAAGCCCAATGTACTTGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTGGAAAACAAAGATGACATTGCCAAACTACGGAAATGCTTTGCAGGGTTGTGGAGCTTGGATGAATCCGACATTGTCAAGGATGCAATTGAGAGGCCTGAATTGTATGTTATGAAACCACAACGAGAAGGAGGAG..............................................................................GAAACAATATCTATGGGGAGGATGTCAGAGGTGCTCTTTTGAAACTGCAAAAGGAAGGCACTGGAAGTGATGCAGCCTACATACTAATGCAGAGGATTTTCCCGAAGATCTCTCACTCGATACTAATGCGAGAAGGCATCTCTCATAAAGAAGAAACCATATCAGAACTTGGGATATATGGTACCTATTTAAG..........................................................................................................................................................................................................................................................................................GAACAAAACGGAAGTTTTAATCAACCAACAGGCTGGTTACTTGATGCGAACAAAGGTCTCTTCATCAGATGAGGGGGGAGTTGCAGCCGGGTTTGCAGTTTTGGACAGTATATACTTGGTTTGATGGAATTGTCTTGCGCGTTGACACTATAACAATGGTTGAATGCAGAAGCTGGACAAGTCATTTCCTACATTATGTTGAGACACCATGCTTTAGCCTGTTTAACCTTTCCTTGTTTTACATTGTATTTTTCTTGCTTAACATCTTTAATAAATAGAGCTCCACATCTGAAGGAAGTGACCAAAAGAATGGTATAGTCAATTCAAAGTGTTTGCTTGCAATTTTAACCTATTCAGTGTTTGGACTCTTTGTTACCACAGGAGCTTTTACTGTTCTGTTCATTACATGTAATTCTGTTTCACTTTTGTTAGTACTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0159C14-xzehx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1485" ref_strand="+" ref_description="T1485">
      <seq>tttttcctgtattttctcacaaattttgatctgttactgtttctcttcccatggaaaccattctctcccctcctttttctcctctcttcaaccccaaaacttccctttcaaagccttttctttcccttactcacttacccagatcaactaagccaatttgctgtagcctcagaaaacagcattcccagattgaaaaacaatctttttcagtacccaaaagttgggtttctcatgtccagcaaggattagctgctctagctatttctttagcccttaatttttgtccagttgtgtcttctgagtctgcattggcatctgaatttgatgtgttaaatgaagggccaccaaaggactcatatgtggttgatgatgctggtgtgcttagcagggtgacaaagtctgatttgaaagcattgttgtcagatgtggagaagagaaaaggcttccacattaatttcatcactgtccgcaagctcactagcaaagctgatgcttttgagtatgctgatcaagttttggagaagtggtatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0159C14-xzehx/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0159C14.1" temp_strand="+" temp_description="C01HBa0159C14.1  AC225024.1 htgs_phase:3 submitted_to_sgn_as:Contig12 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.1 from 31 to 123709">
        <position start="79817" stop="81137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80116" g_stop="80594" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80595" i_stop="80783" i_length="189">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80784" g_stop="80837" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="533" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0159C14.1" gen_strand="+" ref_id="T1485" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0159C14.1" gen_strand="+"/>
        <rDNA rDNA_id="T1485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80116" e_stop="80594"/>
          <exon e_start="80784" e_stop="80837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTGTATTTTCTCACAAATTTTGATCTGTTATTGTTTCTCTTCCAATGGAAACCATTCTCTCCCCTCCTTTTTCTCCTCTCTTCAACCCCAAAACTTCCCTTTCAAAGCCTTTTCTTTCCCTTCCTCACTTACCCAGATCAACTAAGTCAATTTGCTGTAGCCTCAGAAAACAGTATTCCCAGACTGAAAAACAATCTTTTTCAGTACCCAAAAGTTGGGTTTCTCATGTCCAGCAAGGATTAGCTGCTATAGCTATTTCTTTAGCCCTTAATTTTTGTCCAGTTGTGTCTTCTGATTCTGCATTGGCATCTGAATTTGATGTGTTAAATGAAGGGCCACCAAAGGACTCATATGTGGTTGATGATGCTGGTGTGCTTAGCAGGGTGACAAAGTCTGATTTGAAGGCATTGTTGTCAGATGTGGAGAAGAGAAAAGGCTTCCATATTAATTTCATCACTGTCCGCAAGCTCACTGTAATTTTTCTTCTCTTCTTTATCTTGAATTAGTCTATAATAGAAGAAAAGTTTTAATCTTTATGGTGATTTTCTACTTGATATGCTCTTAGAGTACTTAAAATGCTTTTGTGAATTCTTTTCTTGGAGAAACTTATGTGCTAGTAGACCTCAACCCTGTAACTATACTGAGACTTTTGTGTTTTGTAGAGCAAAGCTGATGCTTTTGAGTATGCTGATCAAGTTTTGGAGAAGTGGTATCCT</genome_strand>
        <mrna_strand>TTTTTCCTGTATTTTCTCACAAATTTTGATCTGTTACTGTTTCTCTTCCCATGGAAACCATTCTCTCCCCTCCTTTTTCTCCTCTCTTCAACCCCAAAACTTCCCTTTCAAAGCCTTTTCTTTCCCTTACTCACTTACCCAGATCAACTAAGCCAATTTGCTGTAGCCTCAGAAAACAGCATTCCCAGATTGAAAAACAATCTTTTTCAGTACCCAAAAGTTGGGTTTCTCATGTCCAGCAAGGATTAGCTGCTCTAGCTATTTCTTTAGCCCTTAATTTTTGTCCAGTTGTGTCTTCTGAGTCTGCATTGGCATCTGAATTTGATGTGTTAAATGAAGGGCCACCAAAGGACTCATATGTGGTTGATGATGCTGGTGTGCTTAGCAGGGTGACAAAGTCTGATTTGAAAGCATTGTTGTCAGATGTGGAGAAGAGAAAAGGCTTCCACATTAATTTCATCACTGTCCGCAAGCTCACT.............................................................................................................................................................................................AGCAAAGCTGATGCTTTTGAGTATGCTGATCAAGTTTTGGAGAAGTGGTATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0159C14-xzehx/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At1g54780" ref_strand="+" ref_description="C2_At1g54780">
      <seq>tttttctgtattttctcacaaattttgatctgatactggctttcttccaatggaaactattctctcccctcctttttctcctctcttcaaccccaaaacttccctttcaaagcctttgctttccctttctcacttacccagatcaactaagccaatttgctgtagcctcagaaaacagcattcccagattgaaaaagaatctttttcagtacccaaaagttgggtttctcatgtccagcaaggattagctgctctagctatttctttagcccttaatttttgtccagttgtgtcttctgattctgcattggcatctgaatttgatgtgttaaatgaagggccaccaaaggactcatatgtagttgatgatgctggtgtgcttagcagggtgacaaagtctgatttgaaggcattgttgtctgatgtggagaagagaaaaggcttccacattaatttcatcactgtccgcaagctcactagcaaagctgatgcttttgagtatgctgaccaagttttggagaagtggtaccctagtgttgaacaaggaaatgataagggtatagttgtgcttgttacaagtcaaaaggaaggcgcaataaccggtggccctgattttgtaaaggccgttggagatactgttcttgatgctaccgtctcagagaaccttccagtgttggctactgaagagaagtacaatgaagcagttttcagcactgccacacgtcttgttgcagccattgatggccttcctgatcctggtggcccccaactcaaggataacaaaagagagtccaacttcaaatccagagaggaaactgatgagaaaagaggacaattcacacttgtggttggtgggctgttagtgattgcttttgttgttcctatggctcaatactatgcatatgtttcaaagaagtgaactgtctgattctggaaagttacattttcgtgagatttgagtaagcatgtatattatcgtgtacaaaatggtccattcggaaatgactgattcatgagatatttaaaaaggataaatatgaagatttggacctcccctaacataaaaaaaaaaaaaaaaaactcgagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0159C14-xzehx/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0159C14.1" temp_strand="+" temp_description="C01HBa0159C14.1  AC225024.1 htgs_phase:3 submitted_to_sgn_as:Contig12 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.1 from 31 to 123709">
        <position start="79817" stop="83098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80117" g_stop="80594" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80595" i_stop="80783" i_length="189">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80784" g_stop="80976" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="671" r_length="193" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80977" i_stop="82404" i_length="1428">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82405" g_stop="82795" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="1061" r_length="390" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1063" polyA_stop="1081"/>
      <MATCH_line gen_id="C01HBa0159C14.1" gen_strand="+" ref_id="C2_At1g54780" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>1062</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0159C14.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At1g54780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80117" e_stop="80594"/>
          <exon e_start="80784" e_stop="80976"/>
          <exon e_start="82405" e_stop="82795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTGTATTTTCTCACAAATTTTGATCTGTTATTGTTTCTCTTCCAATGGAAACCATTCTCTCCCCTCCTTTTTCTCCTCTCTTCAACCCCAAAACTTCCCTTTCAAAGCCTTTTCTTTCCCTTCCTCACTTACCCAGATCAACTAAGTCAATTTGCTGTAGCCTCAGAAAACAGTATTCCCAGACTGAAAAACAATCTTTTTCAGTACCCAAAAGTTGGGTTTCTCATGTCCAGCAAGGATTAGCTGCTATAGCTATTTCTTTAGCCCTTAATTTTTGTCCAGTTGTGTCTTCTGATTCTGCATTGGCATCTGAATTTGATGTGTTAAATGAAGGGCCACCAAAGGACTCATATGTGGTTGATGATGCTGGTGTGCTTAGCAGGGTGACAAAGTCTGATTTGAAGGCATTGTTGTCAGATGTGGAGAAGAGAAAAGGCTTCCATATTAATTTCATCACTGTCCGCAAGCTCACTGTAATTTTTCTTCTCTTCTTTATCTTGAATTAGTCTATAATAGAAGAAAAGTTTTAATCTTTATGGTGATTTTCTACTTGATATGCTCTTAGAGTACTTAAAATGCTTTTGTGAATTCTTTTCTTGGAGAAACTTATGTGCTAGTAGACCTCAACCCTGTAACTATACTGAGACTTTTGTGTTTTGTAGAGCAAAGCTGATGCTTTTGAGTATGCTGATCAAGTTTTGGAGAAGTGGTATCCTAGTGTTGAGCAAGGAAATGATAAGGGTATAGTTGTGCTTGTTACAAGTCAAAAGGAAGGCGCAATAACTGGTGGCCCTGATTTTGTAAAGGCCGTTGGAGATACTGTTCTTGATGCTACCGTCTCAGAGAACCTTCCAGGTAGGAAATACTTCCTCTTAGTTCCTTGTTGTTTGGGCACATTGATTAATTCTGTCATTGAGGTTGATTTCCAATGAATGGTTTATTGAAAACAGTGGCGATAAGTAAGATTCACAATCTTGGTAAGGACATGGAAGTATATTACATAGAATTAGTATAATAGAGAATATTACTTTTCATAGATTATACTAGGTTAGAAAAGTCTAATTCTCTTCATCAACATTAACAATGGCATGTGAGCAATTTAGTGAGTTTGATAAATGCATGATTTTTGAGTTACTATTAGATCTTAGCTTCTAGAAAAGCTGTTTCATTGCCATGTCTTTGGATTTAGAAACAGGCATAGAAACACAAACTCTGAACGAGTTCACAGTTTATATATTTGTAATTATCCAGAGACAATCTAATGGAGGAAGAAGGATGTTTTTCTTAGTTATTCAGTTCATGCAATAAGAATTCTTTAAAAAGCAAACCTTCTGGTCCAAGAATTGATCATGATGTCGAAACTCTTGGGAAACTAGTGTACTACCTGCTATGTCAATAACAACTAATAATCAGGTCTGCTAATAAAGGCAAAAAGACTAACTAGTGGCTCGAAATGAGTCTGAAGGTATGGAATGAATAGCTTTTTGAAGAATGAATTTGATCTGATTGTCATCATTTTGGTTTGAAAAATGCACAATGGAAGAGGATGCTTGGCAGCTTAGAGACTAAGAGATCATACTACTCCTGTTGTTTTAGCTCGTCATTAATGATAGAGTTAATTAGTACCTTTCCAGTATGTGTTGTGAAAGCTATGGGGTTGAGAACTCTTTGCTTGCTACTGTTATTTAATTTGTGAGTTTTCACCGCTTCATTCCTTAACTTCCCTCTTTCGTTGGTCCATGGGGCTCATTAGTATTCATAGACTTGCAGTACATTCACCTTGATTAGAAGTCAAAAGAAGAATGTACAAGATTTATCTTTTTCATGCATTTTTAGCTTTTTAGGAGAGAAAGTGGATACTATTCACACTTCCAATAAACTGGAATGAAATGTATTTGTTTTGGAGCATTCTCCTTAAATGTCTATTTCTCGAGGTTAAACCCCAGGCCCAAATGTTTAGTCCAATTATTTACAAATTGAGAATGCAGCATCTGAATGTCATTATTAGTGCTAATGTTGGTATGAAAAGTCTCTTAATCAAGAAAAAGGGGGTTCAGATGCATGGATTTAGATTATTTTTTTGGATAAACCAAATTTTGGGAAGGTTTACACAGCACCGCATGCCTTTTCTCCATGCAAATGACCATTTTGATAAATTATTATCTGTCTAGACTACTCATTTTATAAATATGGGAGAAGTGGCGACCCCAGAACAATTTTGTTTTGTTTCATAATGGAAGTACACTGATGCTCTTGATTCTGATGGTGGTTTCAATTTTGTAGTTTTGGCTACTGAAGAGAAGTACAATGAAGCAGTTTTCAGCACTGCCAGACGTCTTGTTGCAGCCATTGATGGCCTTCCAGATCCTGGTGGTCCCCAACTCAAGGATAACAAAAGAGAGTCCAACTTTAAATCCAGAGAGGAAACTGATGAGAAAAGAGGACAATTCACACTTGTGGTTGGTGGGCTGTTAGTGATTGCTTTCGTTGTTCCTATGGCTCAATACTATGCATATGTTTCAAAGAAGTGAACTGTCTGATTCTGGGAAGTTACGTTTTTCGTGAGATTTGAGTAAGCATGTATATTGTCGTGTACAAAATGGTCCATTCGGAAATGACTGATTCATGAGATATTTAAAAAGGATAAATATGAAGATTTGGACCTCCCTTAACA</genome_strand>
        <mrna_strand>TTTTTCTGTATTTTCTCACAAATTTTGATCTGATACTGGCTTTCTTCCAATGGAAACTATTCTCTCCCCTCCTTTTTCTCCTCTCTTCAACCCCAAAACTTCCCTTTCAAAGCCTTTGCTTTCCCTTTCTCACTTACCCAGATCAACTAAGCCAATTTGCTGTAGCCTCAGAAAACAGCATTCCCAGATTGAAAAAGAATCTTTTTCAGTACCCAAAAGTTGGGTTTCTCATGTCCAGCAAGGATTAGCTGCTCTAGCTATTTCTTTAGCCCTTAATTTTTGTCCAGTTGTGTCTTCTGATTCTGCATTGGCATCTGAATTTGATGTGTTAAATGAAGGGCCACCAAAGGACTCATATGTAGTTGATGATGCTGGTGTGCTTAGCAGGGTGACAAAGTCTGATTTGAAGGCATTGTTGTCTGATGTGGAGAAGAGAAAAGGCTTCCACATTAATTTCATCACTGTCCGCAAGCTCACT.............................................................................................................................................................................................AGCAAAGCTGATGCTTTTGAGTATGCTGACCAAGTTTTGGAGAAGTGGTACCCTAGTGTTGAACAAGGAAATGATAAGGGTATAGTTGTGCTTGTTACAAGTCAAAAGGAAGGCGCAATAACCGGTGGCCCTGATTTTGTAAAGGCCGTTGGAGATACTGTTCTTGATGCTACCGTCTCAGAGAACCTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGGCTACTGAAGAGAAGTACAATGAAGCAGTTTTCAGCACTGCCACACGTCTTGTTGCAGCCATTGATGGCCTTCCTGATCCTGGTGGCCCCCAACTCAAGGATAACAAAAGAGAGTCCAACTTCAAATCCAGAGAGGAAACTGATGAGAAAAGAGGACAATTCACACTTGTGGTTGGTGGGCTGTTAGTGATTGCTTTTGTTGTTCCTATGGCTCAATACTATGCATATGTTTCAAAGAAGTGAACTGTCTGATTCTGGAAAGTTAC-ATTTTCGTGAGATTTGAGTAAGCATGTATATTATCGTGTACAAAATGGTCCATTCGGAAATGACTGATTCATGAGATATTTAAAAAGGATAAATATGAAGATTTGGACCTCCCCTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="23257" PGL_stop="24006"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23257" e_stop="23487"/>
            <exon e_start="23925" e_stop="24006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="0.974"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="23257" e_stop="23487" e_length="231"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="23488" i_stop="23924" i_length="437"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23925" e_stop="24006" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23257" stop="23487"/>
              <exon start="23925" stop="24006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="cLPT-5-M7" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTTCTCCATTTTCAAGTAGAAAGAAGGTTCGGTGATGGTATGGCATCTTTTCTGAAAGCAACCCACTTTATTCACTCCAGTAACAATCATCAAAATCATCCATTTTCTCAGTCCTATACCCAAACAATCAAAATTTCAACTTCTCGCAAACCTCTAATGGCTGCCCTCAGCGCCACAGCAACAGTTGGACTTTCTGAGACTTTCACTCGATTGAAGGAACAAGGCAAG : GTGGCACTTATTCCATACATCACTGCTGGAGATCCTGACCTGGCAACAACTGCAGAAGCACTGAAAGTGCTGGATAGATGTG</gDNA_template>
            <first_frame> L  F  L  H  F  Q  V  E  R  R  F  G  D  G  M  A  S  F  L  K  A  T  H  F  I  H  S  S  N  N  H  Q  N  H  P  F  S  Q  S  Y  T  Q  T  I  K  I  S  T  S  R  K  P  L  M  A  A  L  S  A  T  A  T  V  G  L  S  E  T  F  T  R  L  K  E  Q  G  K  :  V  A  L  I  P  Y  I  T  A  G  D  P  D  L  A  T  T  A  E  A  L  K  V  L  D  R  C  </first_frame>
            <second_frame>  F  F  S  I  F  K  *  K  E  G  S  V  M  V  W  H  L  F  *  K  Q  P  T  L  F  T  P  V  T  I  I  K  I  I  H  F  L  S  P  I  P  K  Q  S  K  F  Q  L  L  A  N  L  *  W  L  P  S  A  P  Q  Q  Q  L  D  F  L  R  L  S  L  D  *  R  N  K  A  R :   W  H  L  F  H  T  S  L  L  E  I  L  T  W  Q  Q  L  Q  K  H  *  K  C  W  I  D  V </second_frame>
            <third_frame>   F  S  P  F  S  S  R  K  K  V  R  *  W  Y  G  I  F  S  E  S  N  P  L  Y  S  L  Q  *  Q  S  S  K  S  S  I  F  S  V  L  Y  P  N  N  Q  N  F  N  F  S  Q  T  S  N  G  C  P  Q  R  H  S  N  S  W  T  F  *  D  F  H  S  I  E  G  T  R  Q   : G  G  T  Y  S  I  H  H  C  W  R  S  *  P  G  N  N  C  R  S  T  E  S  A  G  *  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0159C14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23257" stop="23487"/>
                    <exon start="23925" stop="24005"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFLHFQVERRFGDGMASFLKATHFIHSSNNHQNHPFSQSYTQTIKISTSRKPLMAALSATATVGLSETFTRLKEQGKVALIPYITAGDPDLATTAEALKVLDRC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="51258" PGL_stop="51787"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51258" e_stop="51787"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51258" e_stop="51787" e_length="530"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51258" stop="51787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="U237757" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATTCAAGACCCACAATTTCTTTTACAAAACAATCAAAGGAAGACGAACCATGATAAACAGCACAACTGAAAGCACAGACGTTCCAACACAAAAGTACCACCTACCAAAGCGTATAATCTTGGTCCGTCACGGCGAGAGCCAAGGGAACAAGGACGATGCAGCATACGGCGTAACCCCAGATTACAAAATCCCTTTGACGGCTCAAGGGATTGAACAAGCAAAACAAGCTGGCTCCCGGATTCTTGATGTTGTTTCCGGCCATGGGTCGTCGGACAACTGGAAGGTTTACTTCTATGTCTCTCCTTACGTGCGCACGCGCTCCACGCTCCGGGAGATTGGCCGGGCATTCCCGAAGAATAGGATGCTTGGGGTTAGAGAAGAGTGCAGAGTTAGAGAACAAGATTTTGGGAATTTTCAAGTCGCTGAGCGTATGAAAGTGATTAAGGAAACTCGGGAGAAATTCGGGAGATTCTTCTATCGGTTTCCGGAAGGCGAATCGGCTGCTGATGTTTATGATCGAGTTTCCC</gDNA_template>
            <first_frame> Q  I  Q  D  P  Q  F  L  L  Q  N  N  Q  R  K  T  N  H  D  K  Q  H  N  *  K  H  R  R  S  N  T  K  V  P  P  T  K  A  Y  N  L  G  P  S  R  R  E  P  R  E  Q  G  R  C  S  I  R  R  N  P  R  L  Q  N  P  F  D  G  S  R  D  *  T  S  K  T  S  W  L  P  D  S  *  C  C  F  R  P  W  V  V  G  Q  L  E  G  L  L  L  C  L  S  L  R  A  H  A  L  H  A  P  G  D  W  P  G  I  P  E  E  *  D  A  W  G  *  R  R  V  Q  S  *  R  T  R  F  W  E  F  S  S  R  *  A  Y  E  S  D  *  G  N  S  G  E  I  R  E  I  L  L  S  V  S  G  R  R  I  G  C  *  C  L  *  S  S  F   </first_frame>
            <second_frame>  K  F  K  T  H  N  F  F  Y  K  T  I  K  G  R  R  T  M  I  N  S  T  T  E  S  T  D  V  P  T  Q  K  Y  H  L  P  K  R  I  I  L  V  R  H  G  E  S  Q  G  N  K  D  D  A  A  Y  G  V  T  P  D  Y  K  I  P  L  T  A  Q  G  I  E  Q  A  K  Q  A  G  S  R  I  L  D  V  V  S  G  H  G  S  S  D  N  W  K  V  Y  F  Y  V  S  P  Y  V  R  T  R  S  T  L  R  E  I  G  R  A  F  P  K  N  R  M  L  G  V  R  E  E  C  R  V  R  E  Q  D  F  G  N  F  Q  V  A  E  R  M  K  V  I  K  E  T  R  E  K  F  G  R  F  F  Y  R  F  P  E  G  E  S  A  A  D  V  Y  D  R  V  S  </second_frame>
            <third_frame>   N  S  R  P  T  I  S  F  T  K  Q  S  K  E  D  E  P  *  *  T  A  Q  L  K  A  Q  T  F  Q  H  K  S  T  T  Y  Q  S  V  *  S  W  S  V  T  A  R  A  K  G  T  R  T  M  Q  H  T  A  *  P  Q  I  T  K  S  L  *  R  L  K  G  L  N  K  Q  N  K  L  A  P  G  F  L  M  L  F  P  A  M  G  R  R  T  T  G  R  F  T  S  M  S  L  L  T  C  A  R  A  P  R  S  G  R  L  A  G  H  S  R  R  I  G  C  L  G  L  E  K  S  A  E  L  E  N  K  I  L  G  I  F  K  S  L  S  V  *  K  *  L  R  K  L  G  R  N  S  G  D  S  S  I  G  F  R  K  A  N  R  L  L  M  F  M  I  E  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0159C14.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51259" stop="51786"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFKTHNFFYKTIKGRRTMINSTTESTDVPTQKYHLPKRIILVRHGESQGNKDDAAYGVTPDYKIPLTAQGIEQAKQAGSRILDVVSGHGSSDNWKVYFYVSPYVRTRSTLREIGRAFPKNRMLGVREECRVREQDFGNFQVAERMKVIKETREKFGRFFYRFPEGESAADVYDRVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="69650" PGL_stop="64481"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69650" e_stop="69329"/>
            <exon e_start="69111" e_stop="68942"/>
            <exon e_start="68802" e_stop="68727"/>
            <exon e_start="68297" e_stop="68167"/>
            <exon e_start="67823" e_stop="67701"/>
            <exon e_start="67618" e_stop="67538"/>
            <exon e_start="67351" e_stop="67271"/>
            <exon e_start="67183" e_stop="67114"/>
            <exon e_start="66166" e_stop="66045"/>
            <exon e_start="65622" e_stop="65483"/>
            <exon e_start="65404" e_stop="65212"/>
            <exon e_start="64929" e_stop="64481"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.777" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.815" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.793" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.622" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69650" e_stop="69329" e_length="322"/>
          </exon>
          <intron i_serial="1" don_prob="0.777" acc_prob="0.996">
            <gDNA_intron_boundary i_start="69328" i_stop="69112" i_length="217"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69111" e_stop="68942" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.988">
            <gDNA_intron_boundary i_start="68941" i_stop="68803" i_length="139"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68802" e_stop="68727" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68726" i_stop="68298" i_length="429"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68297" e_stop="68167" e_length="131"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="68166" i_stop="67824" i_length="343"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67823" e_stop="67701" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.815" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67700" i_stop="67619" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67618" e_stop="67538" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67537" i_stop="67352" i_length="186"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="67351" e_stop="67271" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.793">
            <gDNA_intron_boundary i_start="67270" i_stop="67184" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="67183" e_stop="67114" e_length="70"/>
          </exon>
          <intron i_serial="8" don_prob="0.904" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67113" i_stop="66167" i_length="947"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="66166" e_stop="66045" e_length="122"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="66044" i_stop="65623" i_length="422"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="65622" e_stop="65483" e_length="140"/>
          </exon>
          <intron i_serial="10" don_prob="0.622" acc_prob="0.919">
            <gDNA_intron_boundary i_start="65482" i_stop="65405" i_length="78"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="65404" e_stop="65212" e_length="193"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="65211" i_stop="64930" i_length="282"/>
          </intron>
          <exon e_serial="12" e_score="0.980">
            <gDNA_exon_boundary e_start="64929" e_stop="64481" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69650" stop="69329"/>
              <exon start="69111" stop="68942"/>
              <exon start="68802" stop="68727"/>
              <exon start="68297" stop="68167"/>
              <exon start="67823" stop="67701"/>
              <exon start="67618" stop="67538"/>
              <exon start="67351" stop="67271"/>
              <exon start="67183" stop="67114"/>
              <exon start="66166" stop="66045"/>
              <exon start="65622" stop="65483"/>
              <exon start="65404" stop="65212"/>
              <exon start="64929" stop="64481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g27380" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGCTGTTCTTCTCCATCAATCTCACTAACTACCATCGCTACCTCTCATTTTCAATCCCAAGAATCACTATCAAACTCTTTAAATTTCTACTCACCTACTAGATTTTTGGAACCCCATCTCCTTAAATCTTCCAAGATTTTCATACCCAAATCCCCATTGAAGTGTGCTAAAGTGCCCGAAATGCAGACCCAACTGGAAGATTCTGCGAAACCCATTGTCGATCCTCATGATATCGACTCAAAATTGGTGCAGAAGCTTGCTAATGATGCACTTGTCTGGTGCTCTCTTCGTGGACTTCTTGTTGGTGACAGAAATTCGGAG : AGGTCAGGAACTATTCCTGGTGTTGATATGGTTCATGCTCCAGTTGCTCTCATACCAATGTCATTTCCTGAAAGTCATTGGAAGCAAGCTTGTGAAGTTGCTCCTATTTTCAATGAACTCGTGGATCGCGTGAGTCAGGATGGAGAATTTCTGCAGCAATCACTGTCTAG : GACGAGAAAAGCTGATCCTTTCACCTCCAGATTACTAGAAATCCACTCCAAGATGTTAGAAATCAACAAGCTAGAG : GAAATACGCTTGGGGTTGCATCGCTCAGACTATATGCTGGATGAGCAAACGAAATTACTTTTGCAAATAGAGCTTAACACAATCTCATCATCATTTCCAGGGCTAAGTTGTCTGGTCAGCGAGCTTCACAG : GAGCTTGCTTCAACAATACAGAGAAGACATTGCATCAGATCCTAACAGAATTCCCGCAAACAATGCTGTAAATCAATTTGCTGAAGCATTGGCTAAAGCTTGGAATGAATATGGTGATCCAAG : GGCTGTGATTATTTTTGTGGTTCAAGCTGAAGAGCGCAATATGTATGACCAGCATTGGCTTTCTGCATCATTGAGAGAAAG : ACATCAAGTTACAACTATCAGAAAGACGCTGGCTGAAATTGATGCACTTGGCGAGCTTCAACAAGATGGTACCCTTGTTGT : AGATGGTCAAGCTGTGGCAGTCATTTATTTTAGAGCTGGCTATGCACCAAGTGACTATCACTCGGAATCT : GAGTGGAAAGCTAGGCTGCTGATGGAGCAATCACGTGCAGTCAAGTGCCCTTCAATTTCTTATCATTTAGCTGGCAGCAAGAAGATTCAGCAAGAGCTTGCAAAGCCCAATGTACTTGAAAG : GTTTCTGGAAAACAAAGATGACATTGCCAAACTACGGAAATGCTTTGCAGGGTTGTGGAGCTTGGATGAATCCGACATTGTCAAGGATGCAATTGAGAGGCCTGAATTGTATGTTATGAAACCACAACGAGAAGGAGGAG : GAAACAATATCTATGGGGAGGATGTCAGAGGTGCTCTTTTGAAACTGCAAAAGGAAGGCACTGGAAGTGATGCAGCCTACATACTAATGCAGAGGATTTTCCCGAAGATCTCTCACTCGATACTAATGCGAGAAGGCATCTCTCATAAAGAAGAAACCATATCAGAACTTGGGATATATGGTACCTATTTAAG : GAACAAAACGGAAGTTTTAATCAACCAACAGGCTGGTTACTTGATGCGAACAAAGGTCTCTTCATCAGATGAGGGGGGAGTTGCAGCCGGGTTTGCAGTTTTGGACAGTATATACTTGGTTTGATGGAATTGTCTTGCGCGTTGACACTATAACAATGGTTGAATGCAGAAGCTGGACAAGTCATTTCCTACATTATGTTGAGACACCATGCTTTAGCCTGTTTAACCTTTCCTTGTTTTACATTGTATTTTTCTTGCTTAACATCTTTAATAAATAGAGCTCCACATCTGAAGGAAGTGACCAAAAGAATGGTATAGTCAATTCAAAGTGTTTGCTTGCAATTTTAACCTATTCAGTGTTTGGACTCTTTGTTACCACAGGAGCTTTTACTGTTCTGTTCATTACATGTAATTCTGTTTCACTTTTGTTAGTACTATCAAGATTGCTC</gDNA_template>
            <first_frame> R  L  F  F  S  I  N  L  T  N  Y  H  R  Y  L  S  F  S  I  P  R  I  T  I  K  L  F  K  F  L  L  T  Y  *  I  F  G  T  P  S  P  *  I  F  Q  D  F  H  T  Q  I  P  I  E  V  C  *  S  A  R  N  A  D  P  T  G  R  F  C  E  T  H  C  R  S  S  *  Y  R  L  K  I  G  A  E  A  C  *  *  C  T  C  L  V  L  S  S  W  T  S  C  W  *  Q  K  F  G   : E  V  R  N  Y  S  W  C  *  Y  G  S  C  S  S  C  S  H  T  N  V  I  S  *  K  S  L  E  A  S  L  *  S  C  S  Y  F  Q  *  T  R  G  S  R  E  S  G  W  R  I  S  A  A  I  T  V  *  :  D  E  K  S  *  S  F  H  L  Q  I  T  R  N  P  L  Q  D  V  R  N  Q  Q  A  R   : G  N  T  L  G  V  A  S  L  R  L  Y  A  G  *  A  N  E  I  T  F  A  N  R  A  *  H  N  L  I  I  I  S  R  A  K  L  S  G  Q  R  A  S  Q  :  E  L  A  S  T  I  Q  R  R  H  C  I  R  S  *  Q  N  S  R  K  Q  C  C  K  S  I  C  *  S  I  G  *  S  L  E  *  I  W  *  S  K  :  G  C  D  Y  F  C  G  S  S  *  R  A  Q  Y  V  *  P  A  L  A  F  C  I  I  E  R  K  :  T  S  S  Y  N  Y  Q  K  D  A  G  *  N  *  C  T  W  R  A  S  T  R  W  Y  P  C  C  :  R  W  S  S  C  G  S  H  L  F  *  S  W  L  C  T  K  *  L  S  L  G  I   : *  V  E  S  *  A  A  D  G  A  I  T  C  S  Q  V  P  F  N  F  L  S  F  S  W  Q  Q  E  D  S  A  R  A  C  K  A  Q  C  T  *  K  :  V  S  G  K  Q  R  *  H  C  Q  T  T  E  M  L  C  R  V  V  E  L  G  *  I  R  H  C  Q  G  C  N  *  E  A  *  I  V  C  Y  E  T  T  T  R  R  R  R :   K  Q  Y  L  W  G  G  C  Q  R  C  S  F  E  T  A  K  G  R  H  W  K  *  C  S  L  H  T  N  A  E  D  F  P  E  D  L  S  L  D  T  N  A  R  R  H  L  S  *  R  R  N  H  I  R  T  W  D  I  W  Y  L  F  K  :  E  Q  N  G  S  F  N  Q  P  T  G  W  L  L  D  A  N  K  G  L  F  I  R  *  G  G  S  C  S  R  V  C  S  F  G  Q  Y  I  L  G  L  M  E  L  S  C  A  L  T  L  *  Q  W  L  N  A  E  A  G  Q  V  I  S  Y  I  M  L  R  H  H  A  L  A  C  L  T  F  P  C  F  T  L  Y  F  S  C  L  T  S  L  I  N  R  A  P  H  L  K  E  V  T  K  R  M  V  *  S  I  Q  S  V  C  L  Q  F  *  P  I  Q  C  L  D  S  L  L  P  Q  E  L  L  L  F  C  S  L  H  V  I  L  F  H  F  C  *  Y  Y  Q  D  C   </first_frame>
            <second_frame>  G  C  S  S  P  S  I  S  L  T  T  I  A  T  S  H  F  Q  S  Q  E  S  L  S  N  S  L  N  F  Y  S  P  T  R  F  L  E  P  H  L  L  K  S  S  K  I  F  I  P  K  S  P  L  K  C  A  K  V  P  E  M  Q  T  Q  L  E  D  S  A  K  P  I  V  D  P  H  D  I  D  S  K  L  V  Q  K  L  A  N  D  A  L  V  W  C  S  L  R  G  L  L  V  G  D  R  N  S  E  :  R  S  G  T  I  P  G  V  D  M  V  H  A  P  V  A  L  I  P  M  S  F  P  E  S  H  W  K  Q  A  C  E  V  A  P  I  F  N  E  L  V  D  R  V  S  Q  D  G  E  F  L  Q  Q  S  L  S  R :   T  R  K  A  D  P  F  T  S  R  L  L  E  I  H  S  K  M  L  E  I  N  K  L  E  :  E  I  R  L  G  L  H  R  S  D  Y  M  L  D  E  Q  T  K  L  L  L  Q  I  E  L  N  T  I  S  S  S  F  P  G  L  S  C  L  V  S  E  L  H  R :   S  L  L  Q  Q  Y  R  E  D  I  A  S  D  P  N  R  I  P  A  N  N  A  V  N  Q  F  A  E  A  L  A  K  A  W  N  E  Y  G  D  P  R :   A  V  I  I  F  V  V  Q  A  E  E  R  N  M  Y  D  Q  H  W  L  S  A  S  L  R  E  R :   H  Q  V  T  T  I  R  K  T  L  A  E  I  D  A  L  G  E  L  Q  Q  D  G  T  L  V  V :   D  G  Q  A  V  A  V  I  Y  F  R  A  G  Y  A  P  S  D  Y  H  S  E  S  :  E  W  K  A  R  L  L  M  E  Q  S  R  A  V  K  C  P  S  I  S  Y  H  L  A  G  S  K  K  I  Q  Q  E  L  A  K  P  N  V  L  E  R :   F  L  E  N  K  D  D  I  A  K  L  R  K  C  F  A  G  L  W  S  L  D  E  S  D  I  V  K  D  A  I  E  R  P  E  L  Y  V  M  K  P  Q  R  E  G  G   : G  N  N  I  Y  G  E  D  V  R  G  A  L  L  K  L  Q  K  E  G  T  G  S  D  A  A  Y  I  L  M  Q  R  I  F  P  K  I  S  H  S  I  L  M  R  E  G  I  S  H  K  E  E  T  I  S  E  L  G  I  Y  G  T  Y  L  R :   N  K  T  E  V  L  I  N  Q  Q  A  G  Y  L  M  R  T  K  V  S  S  S  D  E  G  G  V  A  A  G  F  A  V  L  D  S  I  Y  L  V  *  W  N  C  L  A  R  *  H  Y  N  N  G  *  M  Q  K  L  D  K  S  F  P  T  L  C  *  D  T  M  L  *  P  V  *  P  F  L  V  L  H  C  I  F  L  A  *  H  L  *  *  I  E  L  H  I  *  R  K  *  P  K  E  W  Y  S  Q  F  K  V  F  A  C  N  F  N  L  F  S  V  W  T  L  C  Y  H  R  S  F  Y  C  S  V  H  Y  M  *  F  C  F  T  F  V  S  T  I  K  I  A  </second_frame>
            <third_frame>   A  V  L  L  H  Q  S  H  *  L  P  S  L  P  L  I  F  N  P  K  N  H  Y  Q  T  L  *  I  S  T  H  L  L  D  F  W  N  P  I  S  L  N  L  P  R  F  S  Y  P  N  P  H  *  S  V  L  K  C  P  K  C  R  P  N  W  K  I  L  R  N  P  L  S  I  L  M  I  S  T  Q  N  W  C  R  S  L  L  M  M  H  L  S  G  A  L  F  V  D  F  L  L  V  T  E  I  R  R :   G  Q  E  L  F  L  V  L  I  W  F  M  L  Q  L  L  S  Y  Q  C  H  F  L  K  V  I  G  S  K  L  V  K  L  L  L  F  S  M  N  S  W  I  A  *  V  R  M  E  N  F  C  S  N  H  C  L   : G  R  E  K  L  I  L  S  P  P  D  Y  *  K  S  T  P  R  C  *  K  S  T  S  *  R :   K  Y  A  W  G  C  I  A  Q  T  I  C  W  M  S  K  R  N  Y  F  C  K  *  S  L  T  Q  S  H  H  H  F  Q  G  *  V  V  W  S  A  S  F  T   : G  A  C  F  N  N  T  E  K  T  L  H  Q  I  L  T  E  F  P  Q  T  M  L  *  I  N  L  L  K  H  W  L  K  L  G  M  N  M  V  I  Q   : G  L  *  L  F  L  W  F  K  L  K  S  A  I  C  M  T  S  I  G  F  L  H  H  *  E  K   : D  I  K  L  Q  L  S  E  R  R  W  L  K  L  M  H  L  A  S  F  N  K  M  V  P  L  L   : *  M  V  K  L  W  Q  S  F  I  L  E  L  A  M  H  Q  V  T  I  T  R  N  L :   S  G  K  L  G  C  *  W  S  N  H  V  Q  S  S  A  L  Q  F  L  I  I  *  L  A  A  R  R  F  S  K  S  L  Q  S  P  M  Y  L  K   : G  F  W  K  T  K  M  T  L  P  N  Y  G  N  A  L  Q  G  C  G  A  W  M  N  P  T  L  S  R  M  Q  L  R  G  L  N  C  M  L  *  N  H  N  E  K  E  E  :  E  T  I  S  M  G  R  M  S  E  V  L  F  *  N  C  K  R  K  A  L  E  V  M  Q  P  T  Y  *  C  R  G  F  S  R  R  S  L  T  R  Y  *  C  E  K  A  S  L  I  K  K  K  P  Y  Q  N  L  G  Y  M  V  P  I  *   : G  T  K  R  K  F  *  S  T  N  R  L  V  T  *  C  E  Q  R  S  L  H  Q  M  R  G  E  L  Q  P  G  L  Q  F  W  T  V  Y  T  W  F  D  G  I  V  L  R  V  D  T  I  T  M  V  E  C  R  S  W  T  S  H  F  L  H  Y  V  E  T  P  C  F  S  L  F  N  L  S  L  F  Y  I  V  F  F  L  L  N  I  F  N  K  *  S  S  T  S  E  G  S  D  Q  K  N  G  I  V  N  S  K  C  L  L  A  I  L  T  Y  S  V  F  G  L  F  V  T  T  G  A  F  T  V  L  F  I  T  C  N  S  V  S  L  L  L  V  L  S  R  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0159C14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69649" stop="69329"/>
                    <exon start="69111" stop="68942"/>
                    <exon start="68802" stop="68727"/>
                    <exon start="68297" stop="68167"/>
                    <exon start="67823" stop="67701"/>
                    <exon start="67618" stop="67538"/>
                    <exon start="67351" stop="67271"/>
                    <exon start="67183" stop="67114"/>
                    <exon start="66166" stop="66045"/>
                    <exon start="65622" stop="65483"/>
                    <exon start="65404" stop="65212"/>
                    <exon start="64929" stop="64806"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1629</number_coding_nucleotides>
                  <number_encoded_amino_acids>543</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCSSPSISLTTIATSHFQSQESLSNSLNFYSPTRFLEPHLLKSSKIFIPKSPLKCAKVPEMQTQLEDSAKPIVDPHDIDSKLVQKLANDALVWCSLRGLLVGDRNSERSGTIPGVDMVHAPVALIPMSFPESHWKQACEVAPIFNELVDRVSQDGEFLQQSLSRTRKADPFTSRLLEIHSKMLEINKLEEIRLGLHRSDYMLDEQTKLLLQIELNTISSSFPGLSCLVSELHRSLLQQYREDIASDPNRIPANNAVNQFAEALAKAWNEYGDPRAVIIFVVQAEERNMYDQHWLSASLRERHQVTTIRKTLAEIDALGELQQDGTLVVDGQAVAVIYFRAGYAPSDYHSESEWKARLLMEQSRAVKCPSISYHLAGSKKIQQELAKPNVLERFLENKDDIAKLRKCFAGLWSLDESDIVKDAIERPELYVMKPQREGGGNNIYGEDVRGALLKLQKEGTGSDAAYILMQRIFPKISHSILMREGISHKEETISELGIYGTYLRNKTEVLINQQAGYLMRTKVSSSDEGGVAAGFAVLDSIYLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="80116" PGL_stop="82795"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80116" e_stop="80594"/>
            <exon e_start="80784" e_stop="80976"/>
            <exon e_start="82405" e_stop="82795"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.946" e_score="0.977"/>
          <exon-intron don_prob="1.000" acc_prob="0.944" e_score="0.979"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="80116" e_stop="80594" e_length="479"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.946">
            <gDNA_intron_boundary i_start="80595" i_stop="80783" i_length="189"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="80784" e_stop="80976" e_length="193"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.944">
            <gDNA_intron_boundary i_start="80977" i_stop="82404" i_length="1428"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="82405" e_stop="82795" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80116" stop="80594"/>
              <exon start="80784" stop="80837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80117" stop="80594"/>
              <exon start="80784" stop="80976"/>
              <exon start="82405" stop="82795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At1g54780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCTGTATTTTCTCACAAATTTTGATCTGTTATTGTTTCTCTTCCAATGGAAACCATTCTCTCCCCTCCTTTTTCTCCTCTCTTCAACCCCAAAACTTCCCTTTCAAAGCCTTTTCTTTCCCTTCCTCACTTACCCAGATCAACTAAGTCAATTTGCTGTAGCCTCAGAAAACAGTATTCCCAGACTGAAAAACAATCTTTTTCAGTACCCAAAAGTTGGGTTTCTCATGTCCAGCAAGGATTAGCTGCTATAGCTATTTCTTTAGCCCTTAATTTTTGTCCAGTTGTGTCTTCTGATTCTGCATTGGCATCTGAATTTGATGTGTTAAATGAAGGGCCACCAAAGGACTCATATGTGGTTGATGATGCTGGTGTGCTTAGCAGGGTGACAAAGTCTGATTTGAAGGCATTGTTGTCAGATGTGGAGAAGAGAAAAGGCTTCCATATTAATTTCATCACTGTCCGCAAGCTCACT : AGCAAAGCTGATGCTTTTGAGTATGCTGATCAAGTTTTGGAGAAGTGGTATCCTAGTGTTGAGCAAGGAAATGATAAGGGTATAGTTGTGCTTGTTACAAGTCAAAAGGAAGGCGCAATAACTGGTGGCCCTGATTTTGTAAAGGCCGTTGGAGATACTGTTCTTGATGCTACCGTCTCAGAGAACCTTCCAG : TTTTGGCTACTGAAGAGAAGTACAATGAAGCAGTTTTCAGCACTGCCAGACGTCTTGTTGCAGCCATTGATGGCCTTCCAGATCCTGGTGGTCCCCAACTCAAGGATAACAAAAGAGAGTCCAACTTTAAATCCAGAGAGGAAACTGATGAGAAAAGAGGACAATTCACACTTGTGGTTGGTGGGCTGTTAGTGATTGCTTTCGTTGTTCCTATGGCTCAATACTATGCATATGTTTCAAAGAAGTGAACTGTCTGATTCTGGGAAGTTACGTTTTTCGTGAGATTTGAGTAAGCATGTATATTGTCGTGTACAAAATGGTCCATTCGGAAATGACTGATTCATGAGATATTTAAAAAGGATAAATATGAAGATTTGGACCTCCCTTAACA</gDNA_template>
            <first_frame> F  F  L  Y  F  L  T  N  F  D  L  L  L  F  L  F  Q  W  K  P  F  S  P  L  L  F  L  L  S  S  T  P  K  L  P  F  Q  S  L  F  F  P  F  L  T  Y  P  D  Q  L  S  Q  F  A  V  A  S  E  N  S  I  P  R  L  K  N  N  L  F  Q  Y  P  K  V  G  F  L  M  S  S  K  D  *  L  L  *  L  F  L  *  P  L  I  F  V  Q  L  C  L  L  I  L  H  W  H  L  N  L  M  C  *  M  K  G  H  Q  R  T  H  M  W  L  M  M  L  V  C  L  A  G  *  Q  S  L  I  *  R  H  C  C  Q  M  W  R  R  E  K  A  S  I  L  I  S  S  L  S  A  S  S  L :   A  K  L  M  L  L  S  M  L  I  K  F  W  R  S  G  I  L  V  L  S  K  E  M  I  R  V  *  L  C  L  L  Q  V  K  R  K  A  Q  *  L  V  A  L  I  L  *  R  P  L  E  I  L  F  L  M  L  P  S  Q  R  T  F  Q  :  F  W  L  L  K  R  S  T  M  K  Q  F  S  A  L  P  D  V  L  L  Q  P  L  M  A  F  Q  I  L  V  V  P  N  S  R  I  T  K  E  S  P  T  L  N  P  E  R  K  L  M  R  K  E  D  N  S  H  L  W  L  V  G  C  *  *  L  L  S  L  F  L  W  L  N  T  M  H  M  F  Q  R  S  E  L  S  D  S  G  K  L  R  F  S  *  D  L  S  K  H  V  Y  C  R  V  Q  N  G  P  F  G  N  D  *  F  M  R  Y  L  K  R  I  N  M  K  I  W  T  S  L  N  </first_frame>
            <second_frame>  F  F  C  I  F  S  Q  I  L  I  C  Y  C  F  S  S  N  G  N  H  S  L  P  S  F  F  S  S  L  Q  P  Q  N  F  P  F  K  A  F  S  F  P  S  S  L  T  Q  I  N  *  V  N  L  L  *  P  Q  K  T  V  F  P  D  *  K  T  I  F  F  S  T  Q  K  L  G  F  S  C  P  A  R  I  S  C  Y  S  Y  F  F  S  P  *  F  L  S  S  C  V  F  *  F  C  I  G  I  *  I  *  C  V  K  *  R  A  T  K  G  L  I  C  G  *  *  C  W  C  A  *  Q  G  D  K  V  *  F  E  G  I  V  V  R  C  G  E  E  K  R  L  P  Y  *  F  H  H  C  P  Q  A  H   : *  Q  S  *  C  F  *  V  C  *  S  S  F  G  E  V  V  S  *  C  *  A  R  K  *  *  G  Y  S  C  A  C  Y  K  S  K  G  R  R  N  N  W  W  P  *  F  C  K  G  R  W  R  Y  C  S  *  C  Y  R  L  R  E  P  S  S :   F  G  Y  *  R  E  V  Q  *  S  S  F  Q  H  C  Q  T  S  C  C  S  H  *  W  P  S  R  S  W  W  S  P  T  Q  G  *  Q  K  R  V  Q  L  *  I  Q  R  G  N  *  *  E  K  R  T  I  H  T  C  G  W  W  A  V  S  D  C  F  R  C  S  Y  G  S  I  L  C  I  C  F  K  E  V  N  C  L  I  L  G  S  Y  V  F  R  E  I  *  V  S  M  Y  I  V  V  Y  K  M  V  H  S  E  M  T  D  S  *  D  I  *  K  G  *  I  *  R  F  G  P  P  L  T </second_frame>
            <third_frame>   F  S  V  F  S  H  K  F  *  S  V  I  V  S  L  P  M  E  T  I  L  S  P  P  F  S  P  L  F  N  P  K  T  S  L  S  K  P  F  L  S  L  P  H  L  P  R  S  T  K  S  I  C  C  S  L  R  K  Q  Y  S  Q  T  E  K  Q  S  F  S  V  P  K  S  W  V  S  H  V  Q  Q  G  L  A  A  I  A  I  S  L  A  L  N  F  C  P  V  V  S  S  D  S  A  L  A  S  E  F  D  V  L  N  E  G  P  P  K  D  S  Y  V  V  D  D  A  G  V  L  S  R  V  T  K  S  D  L  K  A  L  L  S  D  V  E  K  R  K  G  F  H  I  N  F  I  T  V  R  K  L  T  :  S  K  A  D  A  F  E  Y  A  D  Q  V  L  E  K  W  Y  P  S  V  E  Q  G  N  D  K  G  I  V  V  L  V  T  S  Q  K  E  G  A  I  T  G  G  P  D  F  V  K  A  V  G  D  T  V  L  D  A  T  V  S  E  N  L  P   : V  L  A  T  E  E  K  Y  N  E  A  V  F  S  T  A  R  R  L  V  A  A  I  D  G  L  P  D  P  G  G  P  Q  L  K  D  N  K  R  E  S  N  F  K  S  R  E  E  T  D  E  K  R  G  Q  F  T  L  V  V  G  G  L  L  V  I  A  F  V  V  P  M  A  Q  Y  Y  A  Y  V  S  K  K  *  T  V  *  F  W  E  V  T  F  F  V  R  F  E  *  A  C  I  L  S  C  T  K  W  S  I  R  K  *  L  I  H  E  I  F  K  K  D  K  Y  E  D  L  D  L  P  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0159C14.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80145" stop="80594"/>
                    <exon start="80784" stop="80976"/>
                    <exon start="82405" stop="82652"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>888</number_coding_nucleotides>
                  <number_encoded_amino_acids>296</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVIVSLPMETILSPPFSPLFNPKTSLSKPFLSLPHLPRSTKSICCSLRKQYSQTEKQSFSVPKSWVSHVQQGLAAIAISLALNFCPVVSSDSALASEFDVLNEGPPKDSYVVDDAGVLSRVTKSDLKALLSDVEKRKGFHINFITVRKLTSKADAFEYADQVLEKWYPSVEQGNDKGIVVLVTSQKEGAITGGPDFVKAVGDTVLDATVSENLPVLATEEKYNEAVFSTARRLVAAIDGLPDPGGPQLKDNKRESNFKSREETDEKRGQFTLVVGGLLVIAFVVPMAQYYAYVSKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 11 chains have been computed
$ 
$ memory statistics:
$ 11032 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 2206 bytes was the average size of a spliced alignment
$ 9504 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2376 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 11 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 07:16:42
-->
