<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:19:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600869" ref_strand="+" ref_description="SGN-U600869 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|145338411|ref|NP_187835.2| (e_value=1e-88) methyltransferase; (*ATH) AT3G12270.1 (e_value=9e-91) | Symbol: None | protein arginine N-methyltransferase family protein, similar to protein arginine N-methyltransferase 3 from {Rattus norvegicus} SP:O70467, {Homo sapiens} SP:O60678 | chr3:3910661-3913261 FORWARD | Aliases: F28J15.7; (*SWP) sp|Q0WVD6|ANM3_ARATH (e_value=8e-90) Probable protein arginine N-methyltransferase 3 OS=Arabidopsis thaliana GN=PRMT3; ">
      <seq>ggacatgataagtgataaggtaagaactgatgcttatcggcaagccattctggagaatccttctctcttaaaaggcgctgtagtcatggatgtaggttgtggtactggcatattgagtctctttgcagcccaagcaggtgcgtcaagggtgattgcagttgaagcaagtgaaaagatggcagctgtggcagctaagattgctaaagacaataaccttttgcggattggaagcaagaatgaaggttctgatcaaggcaatggtgtgatggaagtggttcaaggaatggttgaagagctaaagagtgcccagaaagttcagccacacagtgttgatgtgttagtgagtgaatggatgggttattgcctgctttatgagtcaatgctcagctctgtcctgtatgcacgtgatcaatttttgaagcctggaggtgccgttcttcctgacatggcaacaatgtttgctgctgggtttggaagaggcggtacaagcattccattttgggaaaatgtttatggctttaatatgtcttgtatcggcgaggaaatcgttaaagatgcttccagaattccaatagttgatgttgttgacagtcgtgatataataaccaattcaaaagttctccagaactttgatctggtgactatgaagctggaggagatggattttacaggaatggttgaactggagctgaagggagaaacttctgcaaacgggtctacaggttcaaaacctgtaacaaactggtgttatggagttgtcgtttggtttgaaactggatttacagaaagattctgtaaagaaaagccaactaacttgtccacatctccccatactaccagcactcactggtcgcaaactatcctcactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="-" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="13525" stop="9257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13225" g_stop="13207" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13206" i_stop="12400" i_length="807">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12399" g_stop="12302" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="117" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12301" i_stop="11068" i_length="1234">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11067" g_stop="10989" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="196" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10988" i_stop="10864" i_length="125">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10863" g_stop="10603" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="457" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10602" i_stop="10514" i_length="89">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10513" g_stop="10346" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="625" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10345" i_stop="9803" i_length="543">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9802" g_stop="9557" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="871" r_length="246" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="-" ref_id="SGN-U600869" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13225" e_stop="13207"/>
          <exon e_start="12399" e_stop="12302"/>
          <exon e_start="11067" e_stop="10989"/>
          <exon e_start="10863" e_stop="10603"/>
          <exon e_start="10513" e_stop="10346"/>
          <exon e_start="9802" e_stop="9557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACATGATAAGTGATAAGGTAAGTTCTACCCTGATCGGTGTTGTGCATACTTAATTAGTAAGGTAGAACAACTAGTTTCCCTTGATTAAACCTTTTCTATGCTTAATTATTAGGTGCTTCTTTGGCCCAACTTTTGATGGATTAGCAATTATCTTGTTTTGGTGGAAGATATAGTCATTCAAATTGTTTTCTCCATTCTAGGCTAAGGACTTTTTCAATCTCTATTTGTGGTATACTAGTTTACCTATGCCAATATTTACCTGAATGGATTTTGCTTGTATTTCTCGTCAAACAAGAATCAACTGCTATCTACTTTAAGACAAAGTGAATATACTCAACCAAACTAAGGGAATAAGAACAATCTAGTTGTTCTGCTTTGCTAATTTATCCTTGGAATTTTCTTATTTTGGATCAGGGCTTAGTTTTACTAGAGCAGAAGAAGAACCAATAAAATGCAATCAAAGCATTCTATTCTCCAGACTCAACCATTGTGTATAGCCAGCCCCTTGTCTTCATCAGGAAGTACATTGTATATAGCCTATCACCTTGTCTTCATCAGGAAGTATCTATACCCCTATTTTTCACCACACTGCTTTCCAATCTCTTTCCACCAGCTTTTCAAATCTAATTAACAATACATTTCCTGATGTTGCCTTCAAAACATTGTTGTGAAGCTGATGTAGGTTCTTCATTGAACTCACATTATTGTCAAAATCTATTTCTGCTTCTTTGTGCCTGGACATAATAATGTTTGTCTTCTTTTAAGAAAAAAGGGTACCACCGAATTATTTGGTAACTAGATTGTCAACATTGTGGCTTATGCAGGTAAGAACTGATGCTTATCGGCAAGCCATTCTGGAGAATCCTTCTCTCTTAAAAGGCGCTGTAGTCATGGATGTAGGTTGTGGTACTGGCATATTGAGGTTAGAAGAGTTCTGCTCATGTGTACTTCATTTCCTTACATTTTTACCAGTGTAGTCACGAATTTGATGCAATATTCTGAAGATCTTAAATCCTTTCTAGGCCTCCTTCATTTGTGAGCACTTGAATCCTTGGCTGAATTTCTTGTTCTACTTTTAGGGGATAAATCATGGAGGAAGAAAAGAAAAATATTAAAAACTATGAAAGGAGGTAGTTAGACTTGAAAGAACATAAAGTGACGAGCAAGAAGCTCTTAATCTGTTTTTTTTTTATATTACAGTACGCCAAGCTGAAGAAAGGAGAATTAAGTCTTAATGCCTTAGCCAGAAGGTGAAATAGTAGCACGTGTATCTTTTTCCACTAGCAGGATTCAGGAAGAGCAGTTTGCAAACCAAGAGAACATTTGAAAATCTCTTCAAGACAGATTTCAAATATTTTCTTCGTTGGTTTGCACTTTGGTCTAGTATGAGGAAGTATGTAGAGACTGGCCATCTCTTAGCTGTCCTAGTCTATCTGCGCACCCGTATGTTTTTGGAGTGTGAAAACCATCCTTACAGCTTCAAGTAGTGTATGTATTTCAACATTATATGTAAAAAAAAAATTAGTTTATGTTTTAAGTTACCATTATCAAAAAAACAAAACACTAGTGTATGTTTAGTCCTTTAATTTTTGCTAGGAGATATAACTTGTACAGTAGCTGACTCTTTTTTTTGTAATCCTTGCATCTTCTGGATGCTTTTTGATGAAATACTTCTACCTGATCGAAAAAGAAAATTGAAAATCAGTGGCTCAAGGAGGAAGGATTCATAGGAAATCATGTTTCAATTTCAACTAACCATTCTTTCAGCTGATACTTTTCGATAGACATTTGGACAGTGTCTGTTTGGATTTTAATAAAAGGACATTTGAAATTGAAGTTGAAAAAACAAAATTGGTTAGTTGAAGTTGTATTTGGACATGAACTTCACTTTGAAATAAGTTAAAGTTTTGTGAGTGAAAACCATTACTTGCATTGAGATGTGTATTTGCAAATACTGATTTTAGTATTTGCACATGAGTTCATGCGCAAAGACCCCAGGTAATCAGATTTTTTGGAAGAATGCCCAACAGGTCACTGATACTGTACATCTTAGTTGTTTCTTTTGAAGTCAACCAATTAGGAAGTACCGAAGTAGATGTCAACTTGTAACTCTAAAGAGGAGTCGAGCAATTAGAACTGATTCATGCTGTTTCTAGTCTCTTTGCAGCCCAAGCAGGTGCGTCAAGGGTGATTGCAGTTGAAGCAAGTGAAAAGATGGCAGCTGTGGCAGCTAAGGTCAACAATCTCTCATTATCAAGTTGTCATGTTGCTTTTCCAAAATTTTAACTATTTTCTCTTCACTTGCAGCTCCAGTTTTGTTAACTAAACTCCATTACTTTATGAACTTACTTTGATTATAGATTGCTAAAGACAATAACCTTTTGCGGATTGGAAGCAAGAATGAAGGTTCTGATCAAGGCAATGGTGTGATGGAAGTGGTTCAAGGAATGGTTGAAGAGCTAAAGAGTGCCCAGAAAGTTCAGCCACACAGTGTTGATGTGTTAGTGAGTGAATGGATGGGTTATTGCCTGCTTTATGAGTCAATGCTCAGCTCTGTCCTGTATGCACGTGATCAATTTTTGAAGCCTGGAGGTGCCGTTCTTCCTGACATGGCAACAATGGTAACCCTGAACAAGCTGTTTTTTGCATGTGTTAACAAATTACGTGTTTGTATGTTGCAGCTAACTTCTGTGTCCACATTTTTTTTTAGTTTGCTGCTGGGTTTGGAAGAGGCGGTACAAGCATTCCATTTTGGGAAAATGTTTATGGCTTTAATATGTCTTGTATCGGCGAGGAAATCGTTAAAGATGCTTCCAGAATTCCAATAGTTGATGTTGTTGACAGTCGTGATATAATAACCAATTCAAAAGTTCTCCAGGTTTGTCTTTTTATCTGTATGGAGAAGCATGAAAATTGTGTGCAATACTGACCTCTCATGGTCCTTATTTTAGTATCAGTTTTCTGCATTACAGTATATTGGCATTGTCAAACTTTTTAGGTTTTATACGTGATACACAATAGTCTTATATGTCAAGCCTAATATTTGTTTAACTCAATATTTTATTACCTAATGCTTATCTTTCCACTTGATTCTAGGATTCACCTATGATTATAACAAGCACAATTGAATTGTTTGAGTGAGAGCTTTTGAAGGCTATATGAATTTTATTTTGAATATTAAATAGTTATATAGATGTAATTATTTGAGAAATAAGTGTTGTACGAGAGAACTGGGTGAACTGTGAAGACATCTGTTGCTTGGAATGACTGTGTTCCTAGATTTTGATTTTCCCCCACAAATCCCTTGGCTCATGACACCGTGCTTGTCTAGAGGACAACTCATTGAACAGATAAAAAGCTGAGAGAAATCTCTTTACGTTTTTACAATATTTCACTGACATCTAGTATACTTTATGAACAGAACTTTGATCTGGTGACTATGAAGCTGGAGGAGATGGATTTTACAGGAATGGTTGAACTGGAGCTGAAGGGAGAAACTTCTGCAAACGGGTCTACAGGTTCAAAACCTGTAACAAACTGGTGTTATGGAGTTGTCGTTTGGTTTGAAACTGGATTTACAGAAAGATTCTGTAAAGAAAAGCCAACTAACTTGTCCACATCTCCCCATACTACCAGCACTCACTGGTCGCAGACTATCCTCACTTTC</genome_strand>
        <mrna_strand>GGACATGATAAGTGATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGAACTGATGCTTATCGGCAAGCCATTCTGGAGAATCCTTCTCTCTTAAAAGGCGCTGTAGTCATGGATGTAGGTTGTGGTACTGGCATATTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTTTGCAGCCCAAGCAGGTGCGTCAAGGGTGATTGCAGTTGAAGCAAGTGAAAAGATGGCAGCTGTGGCAGCTAAG.............................................................................................................................ATTGCTAAAGACAATAACCTTTTGCGGATTGGAAGCAAGAATGAAGGTTCTGATCAAGGCAATGGTGTGATGGAAGTGGTTCAAGGAATGGTTGAAGAGCTAAAGAGTGCCCAGAAAGTTCAGCCACACAGTGTTGATGTGTTAGTGAGTGAATGGATGGGTTATTGCCTGCTTTATGAGTCAATGCTCAGCTCTGTCCTGTATGCACGTGATCAATTTTTGAAGCCTGGAGGTGCCGTTCTTCCTGACATGGCAACAATG.........................................................................................TTTGCTGCTGGGTTTGGAAGAGGCGGTACAAGCATTCCATTTTGGGAAAATGTTTATGGCTTTAATATGTCTTGTATCGGCGAGGAAATCGTTAAAGATGCTTCCAGAATTCCAATAGTTGATGTTGTTGACAGTCGTGATATAATAACCAATTCAAAAGTTCTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGATCTGGTGACTATGAAGCTGGAGGAGATGGATTTTACAGGAATGGTTGAACTGGAGCTGAAGGGAGAAACTTCTGCAAACGGGTCTACAGGTTCAAAACCTGTAACAAACTGGTGTTATGGAGTTGTCGTTTGGTTTGAAACTGGATTTACAGAAAGATTCTGTAAAGAAAAGCCAACTAACTTGTCCACATCTCCCCATACTACCAGCACTCACTGGTCGCAAACTATCCTCACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598626" ref_strand="+" ref_description="SGN-U598626 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|152013350|sp|A3BMN9|ANM3_ORYSJ (e_value=3e-33) Probable; (*ATH) AT3G12270.1 (e_value=8e-25) | Symbol: None | protein arginine N-methyltransferase family protein, similar to protein arginine N-methyltransferase 3 from {Rattus norvegicus} SP:O70467, {Homo sapiens} SP:O60678 | chr3:3910661-3913261 FORWARD | Aliases: F28J15.7; (*SWP) sp|A2YP56|ANM3_ORYSI (e_value=2e-34) Probable protein arginine N-methyltransferase 3 OS=Oryza sativa subsp. indica GN=PRMT3; ">
      <seq>tgaagaggaggctatgagctcaaaattactctgtttgttctgcgactctacttacgattccagtaacgcgctctttgagcactgtgcatccgaacatcggttccatttcaacactctcaagaactcgcttgccttggatttttatggctgctttaagctaattaattatgttaggtctaaggttgctgggaacaaatgctggagttgtggcattgtatgtcggtcaaaggaagatttactgaatcacttgcacgaagttgctagttttgataatggcaagcttccttggaatgatgatgagtttctgaagcctttcttgaatgaggatgcacttttgtatagctttgatgaagacgatgaaggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="-" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="14627" stop="13245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14327" g_stop="14147" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14146" i_stop="13729" i_length="418">
            <donor d_prob="0.736" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13728" g_stop="13545" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="365" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="-" ref_id="SGN-U598626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U598626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14327" e_stop="14147"/>
          <exon e_start="13728" e_stop="13545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAGGAGGCTATGAGCTCAAAATTACTCTGTTTGTTCTGCGACTCTACTTACGATTCCAGTAACGCGCTCTTTGAGCACTGTGCATCCGAACATCGGTTCCATTTCAACACTCTCAAGAACTCGCTTGCCTTGGATTTTTATGGCTGCTTTAAGCTAATTAATTATGTTAGGTCTAAGGTATTCGTCTAACTCATCTTTATTGCTAAAAAAAGATGTCATTTTTCAACTCTGTGATTAAGTTATCCCGTGCAATTCAATAGAAACTAATGTCCTTTTTTCCCGAGTTTAATCATTTATTAGTTGGTAATCTAATTGTTTTAATGAATGTACCGTTTGGATAGATTGTATAGATATCCATGAGCTAGTATAAAAGGCAGGGTAAATGATAAAATAGGATTTAACTATAATGATATGATACAATATAATAGCATTTAAGTAATATTCAAAACAAATATTTTGTTTGAACTAAGAACACTATACAATACAATAGGAAACAACCGTCCAAACAAGCTGTTAGTGATTTTTGTGTTTTATTTCAACTCTTAGTATATATAACTTGATTCATTTTTTCTCATACATATATGTTGCTATTTAGGTTGCTGGGAACAAATGCTGGAGTTGTGGCATTGTATGTCGGTCAAAGGAAGATTTACTGAATCACTTGCACGAAGTTGCTAGTTTTGATAATGGCAAGCTTCCTTGGAATGATGATGAGTTTCTGAAGCCTTTCTTGAATGAGGATGCACTTTTGTATAGCTTTGATGAAGACGATGAAGGTG</genome_strand>
        <mrna_strand>TGAAGAGGAGGCTATGAGCTCAAAATTACTCTGTTTGTTCTGCGACTCTACTTACGATTCCAGTAACGCGCTCTTTGAGCACTGTGCATCCGAACATCGGTTCCATTTCAACACTCTCAAGAACTCGCTTGCCTTGGATTTTTATGGCTGCTTTAAGCTAATTAATTATGTTAGGTCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGGGAACAAATGCTGGAGTTGTGGCATTGTATGTCGGTCAAAGGAAGATTTACTGAATCACTTGCACGAAGTTGCTAGTTTTGATAATGGCAAGCTTCCTTGGAATGATGATGAGTTTCTGAAGCCTTTCTTGAATGAGGATGCACTTTTGTATAGCTTTGATGAAGACGATGAAGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591850" ref_strand="+" ref_description="SGN-U591850 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157351835|emb|CAO42799.1| (e_value=2e-71) unnamed; (*ATH) AT5G06970.1 (e_value=2e-66) | Symbol: None | expressed protein | chr5:2158229-2166399 REVERSE | Aliases: MOJ9.14, MOJ9_14; ">
      <seq>gggtccgggcccccccttgcttctagagttgacatggagaagggattccaagagttgacattcttgcagtctttcttgttgccaatttcaaaatgggctgataagcagttggtagactaccatcttaattatgctgaggggttgatgatgatggaaaacactgtggcagttgctatgcttgttcgaagacttcttctagaagaacctgaaacagcaatggagtctgcaacaatatcagataaagagcagatagagttctacgtgacatcttcaatcaagaatgcatttacaaggataatacaagatgttgaggcaatatctcaagcaacaaatgagcatcctttagcactgcttgcagaacacacgaagaaactattgcaaagagataatactatttacatgcctatcttatctcaacggcatcaaaatgctgctgctgtttctgcatccacacttcacaagctttatggtatcaaattgagaccattccttgataatgcggaacatctgaccgaggatacaatagctgtctttcctgctgcttatagtcttgagcatgatataatgcaagttatcgtatcttcttgtgctgatggaacatcagatgcttattgtagaaaactaaacttgttcaagattgagactgcgtctgggacattggtactacgatgggtgaattcacaacttgcaaggattttgaattgggttgacccgggctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="+" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="24064" stop="28348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24363" g_stop="24486" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="138" r_length="123" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24487" i_stop="24866" i_length="380">
            <donor d_prob="0.898" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24867" g_stop="24941" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="213" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24942" i_stop="25106" i_length="165">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25107" g_stop="25187" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="294" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25188" i_stop="27239" i_length="2052">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27240" g_stop="27425" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="480" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27426" i_stop="27522" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27523" g_stop="27678" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="636" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27679" i_stop="27964" i_length="286">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.824" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27965" g_stop="28048" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="721" r_length="85" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="+" ref_id="SGN-U591850" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24363" e_stop="24486"/>
          <exon e_start="24867" e_stop="24941"/>
          <exon e_start="25107" e_stop="25187"/>
          <exon e_start="27240" e_stop="27425"/>
          <exon e_start="27523" e_stop="27678"/>
          <exon e_start="27965" e_stop="28048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCATTCTAGAGTTGAAATGGAGAAGGGATTCCAAGAGTTGACATTCTTGCAGTCTTTCTTGTTGCCAATTTCAAAATGGGCTGATAAGCAGTTGGGAGACTACCATCTTAATTATGCTGAGGTTCGTGACAATTTTGTTTTACTTTGATTAGGCGATGGCAAATCTTGTGCGCATGATAAGTCATTTGTTTTAACTTACTTTTACAAGTCTATTAAAAATTTTGTTTGTGGTAATACAGATACTGATCATCTTAGAGCTTGTTCTAAAAACTCTGTTTAGCAATCTAAACCTAAGAAACTAACTTCCAAATTTACTCTTTTCCATGAATTATGGTATAGCCAATATTTCAAATTTTCTGCCTTTTCTGTTGAAATTAATTCCATTTCAGATTTTCTGCCTTTTCTGTTCGAAAATATATTTCAAATGTAGGATATTATTTAGTTTAAGTTAATAGTGCAAGAAAGTTGTGTCTAAAAACTAGTTGATGTTATTGTCTTTAGGGGTTGATGATGATGGAAAACACTGTGGCAGTTGCTATGCTTGTTCGAAGACTTCTTCTAGAAGAACCTGAAACAGTATGTCTGACTACTTAACTTTTCTGGTGAACTATCTTAAATTTGTTCTGGGAAATTGAATGATATGTTATTTGTGCTGTCTGTGCATTCACTACAAACCATAAGATCCACATACATGGACACTTATAGATAATAATATTGTATTCAACTTTGATGTTTATGTAGGCAATGGAGTCTGCAACAATATCAGATAAAGAGCAGATAGAGTTCTACGTGACATCTTCAATCAAGAATGCATTTACAAGGGTAAAGACTTTTTACTTGTTGGAAAAGGAAAGTCAAATTGGTTGTGGACTATAATTTCTGCTGTCGAAATATTTCTATATGTTGGGGCAGTGATTATTCAAACACTGGTTCAATTAGTTTCATGAGTTGGTAGAAGGCCCTAACTGTAAAGTGCAACTCTCTACGATCAGGCCTCCAAGGCCTAGCTCGAGTGGCAAAAAGTGGAGGATTTGTGGCTTAGGTCACAGGTTCAAGCCCCACACCATGCAAAGCGAAGCCCAATATTTAAGTGGAGAAGGTTAGAGGGGCGGACTCATTATCTGCCGAGTCTAGAAGGCTGTGATTGGTCCAAAGGGCGGGTCACAGTCAGATTTCTTGGTTATGAGAAAAAAAGTGCAACTCTACGTTCAGTTGGATTAATTTCTTCAGATATTAGAGAACCCTAACTATGAATATCCGTACGCATAGTGTGGTTCTTTTAAATCTGTTCTCTGTTCTTTTATTTGTTGGCTACATATAAATGTCATTGTGGCTTAAATATGTCCTCTGACCAGTTAAACAGTCCATCCAAATTTCTCATTTGTTGACATGCAATGTTTTTTTTTTTTTTGATGAAGTAACAAGAATGTCATTAACAAAGCATCAAGCAGATGCACAGATTACAAAGAAAGAAATATCAGCTCCCAAAAAGGCAAAAAAAAGCTTATCTAAACAGCTAACAACAGAGATCTATGGAGCTGATAAATTCCAGGAAAGAATCGACACTAAGTACACGAGAGAGATTAACCCAACCTGAAAGAGTAATCAAACATCTTGCTATAAAGGTAGAGATGGGAGTTACAGTGCCATCAAAACATCTTTGCTCCTTTCCGTCCATAAGCACCACAAAATACAAGCTGGACCAAAGACCAGATGTGCTTGATGGACTTTCCAACTTTCCAAGAATTCCAACACACAAGAGCCTCTCTCAATGATCTTGGCATGACCCAAGTGAGTCCAAAAAGTGAGAACATGTTCCATAGGCCTGTTGCAACTGTGCAATTAAGGAACAGGTGATTAATAGATTCTGAGTTGTACAAGCACATGTAGGATCTATTGACTATTTGGAATTTCCTCCTCATGACATTATTCTGAGTCAAGCGAGAGTCTTTTAGAGTTATCCAACTGAAACAAATAACTTAGGTGGCAACTTAGTTCTCCATATTAATTTCCATGGCCATTGATCAACTAAGGTTTTCTTGGAGTTTTGTTAAAGGTAGCATGTTGTAACTGAGTAGGATCCATACCTGCTATGTCTCCAGATAAGTTTGTCCTTGCTTTGTCTGTTGATTGCACTGAGGCTAAAAACCTCTTCCAACTCCCAGTCATTGAGATTTCTCCTTAGGATCAGATTCCTCACTTTGTCTTCCCTGTACTGCGAGAAGGTTGAGTCTGGATTAGATGCAATCTGGAAAATGCTTGGAAAAACATTCATTAGAGGAATGTCTCCTAGCCAAATATCTTTCCAAAACTGAATATGTTCCCCATTTCCCACCATAAGTGAGGCGTTGACATGCAATGGGTTTTACTATAATGGTATACTAAAATAATCGAGAACCGGATCAGAAAAGACCAAGAGCACTGCCCCAGGTCTTCTTACTTTCTATTTCACAGCTAACATGTTATGAATCTCCTTAGATTATGGGACACTTGTGTTAAATAGGCTTCTCACAGGAAGCAAGAGGGTGTTTTCATATTTCCCATAAAATGACTGTTTTAAAGAAGTTACATTTGATTGATTTACTTCATGTGGTTTTAACAACAGAAGTAGACCATCTTTCCCTGGATTGTGGTAGTGCTAGACTTCTCATCTTATATTAGTGTGATGTTGATCGTTGGGAACCAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTATGTATTCCTCTATCCGTAGTGTACATTAAATGTACAGAAATGTCTCTGTATATCATAGCTAGTTTCTGAGTGTTGTTATTTCAGTATTGTGTTTCCTCTAGATTGGGCATGAAGGGAAATTCCTGTTTGTCATGAATAATCGCTTTGTGCAGATAATACAAGATGTTGAGGCAATATCTCAAGCAACAAATGAGCATCCTTTAGCACTGCTTGCAGAACACACGAAGAAACTATTGCAAAGAGATAATACTATTTACATGCCTATCTTATCTCAACGGCATCAAAATGCTGCTGCTGTTTCTGCATCCACACTTCACAAGCTTTATGGTATCAAATTGGTAAGTAATGATTAATCTAACTCCTGGAGATCTAGTTGTAGCTTGATTAATGGTAATATGTTTGGTATGGAGATTTGAGTGAATGTTATTTATTCAGAGACCATTCCTTGATAATGCGGAACATCTGACCGAGGATACAATAGCTGTCTTTCCTGCTGCTTATAGTCTTGAGCATGATATAATGCAAGTTATCGTATCTTCTTGTGCTGATGGAACATCAGATGCTTATTGTAGAAAACTAAACTTGTTCAAGGTAAGGGAACTCTTTCTGGGCTTCTTTAATATTTTTATAATGGAGTAACTTAGGGTGACATAATTTTGCCAAATTTATACGGGGCAGTTCCAAATGAAAGATTTTGTAGCCAGTAAATTAAGATTCTTGGATTTATTGTCTTCTGACCTCGGCAGTCTAACTGCTCCGAACCTTTTTATTGGTTGGTGGCGGGATGGTTTTGCTAATAAAGATTCCACGTGTCATGCTCAATATTTTACGTAGTGAATCTGGTGTTTTTCTTAGCCTTTTCTTGTTTTAAGTATAGATTGAGACTGCGTCTGGGACATTGGTACTACGATGGGTGAATTCACAACTTGCAAGGATTTTGAATTGGGTTGA-CCGGGCTATT</genome_strand>
        <mrna_strand>CTTGC-TTCTAGAGTTGACATGGAGAAGGGATTCCAAGAGTTGACATTCTTGCAGTCTTTCTTGTTGCCAATTTCAAAATGGGCTGATAAGCAGTTGGTAGACTACCATCTTAATTATGCTGAG............................................................................................................................................................................................................................................................................................................................................................................................GGGTTGATGATGATGGAAAACACTGTGGCAGTTGCTATGCTTGTTCGAAGACTTCTTCTAGAAGAACCTGAAACA.....................................................................................................................................................................GCAATGGAGTCTGCAACAATATCAGATAAAGAGCAGATAGAGTTCTACGTGACATCTTCAATCAAGAATGCATTTACAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATACAAGATGTTGAGGCAATATCTCAAGCAACAAATGAGCATCCTTTAGCACTGCTTGCAGAACACACGAAGAAACTATTGCAAAGAGATAATACTATTTACATGCCTATCTTATCTCAACGGCATCAAAATGCTGCTGCTGTTTCTGCATCCACACTTCACAAGCTTTATGGTATCAAATTG.................................................................................................AGACCATTCCTTGATAATGCGGAACATCTGACCGAGGATACAATAGCTGTCTTTCCTGCTGCTTATAGTCTTGAGCATGATATAATGCAAGTTATCGTATCTTCTTGTGCTGATGGAACATCAGATGCTTATTGTAGAAAACTAAACTTGTTCAAG..............................................................................................................................................................................................................................................................................................ATTGAGACTGCGTCTGGGACATTGGTACTACGATGGGTGAATTCACAACTTGCAAGGATTTTGAATTGGGTTGACCCGGGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571336" ref_strand="-" ref_description="SGN-U571336 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157351835|emb|CAO42799.1| (e_value=3e-51) unnamed; (*ATH) AT5G06970.1 (e_value=1e-50) | Symbol: None | expressed protein | chr5:2158229-2166399 REVERSE | Aliases: MOJ9.14, MOJ9_14; ">
      <seq>taatcaactttgtgatgtgataatggagccactgcgggatcgtgttgtaacaggactgcttcaagcatcactggatggcctagtcagagttatattagatggaggaccatcacgtgtattctccctgggtgatgctaagctattggaggaggatctagagatcttgaaggaattcttcatttcgggtggggatgggcttcctcgtggagtagtcgaaaatcaagttgcacgtgttcggcaggtgataaagttgcaaggttatgagactagggaaataatagaagacctgagatctgctagtgagttagaaatgcagggcggaaggggtaaattaggtgctgataccaagacccttcttaggatcctgtgtcatcgaggagagtcagaggcctctcagtttgtcaagaagcaattcaaaatccccaaatctggagcttagtgtacttgttgtgccattgatgagattgtaacataatacactatcgaaacttcatttttaaggatctcatttgtcaatgagacagtctgctgcacagattttttttcttcttcatggaatgtacttaaaacgtagttttttgtttactagttatatgtatatgtttagtgtgcagtcttagacctatttggagggcatgtatacacagtttctgctgtcgtgggagaagaaaaactatttgtatatgctaatcacatcactcttttattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="+" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="34615" stop="36524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34915" g_stop="34987" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34988" i_stop="35067" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35068" g_stop="35163" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="169" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35164" i_stop="35307" i_length="144">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35308" g_stop="35403" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="265" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35404" i_stop="35818" i_length="415">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35819" g_stop="36220" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="667" r_length="402" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="+" ref_id="SGN-U571336" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571336" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34915" e_stop="34987"/>
          <exon e_start="35068" e_stop="35163"/>
          <exon e_start="35308" e_stop="35403"/>
          <exon e_start="35819" e_stop="36220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCAACTTTGTGATGTGATAATGGAGCCACTGCGGGATCGTGTTGTAACAGGACTGCTTCAAGCATCACTGGTCTGTGCACTTATTACTGTTTAGTTTTTCTGTTTTAAACTGTAGTAATTTTTGAATTCCTTGAAAATCGTATTCACCAGGATGGCCTAGTCAGAGTTATATTAGATGGAGGACCATCACGTGTATTCTCCCTGGGTGATGCTAAGCTATTGGAGGAGGATCTAGAGATCTTGAAGGTATTTAAAATGGTTTTGGTTGGATATGCTCGAGAACTATCTGTCTCCTAATGATATCCAAACCAATTTTTGTCTACTTGATATCTCGAAGTGGTGGAGTTACAATATGGTTATTTCTAACCTACTGCTGCTTGTTTGTGAAAGGAATTCTTCATTTCGGGTGGGGATGGGCTTCCTCGTGGAGTAGTCGAAAATCAAGTTGCACGTGTTCGGCAGGTGATAAAGTTGCAAGGTTATGAGGTTAGTTCAGCAATATCATCCATAATGAAGTAATTAGCAGAGTTGACTGCATAAGACCTTTGTCCATCCGGTTACTGATGCTTGTTTCCTCGTTTCTCCATTCTTCTATCATGAAACTCTTTGTATGAGCAATATGCACTTTTCGCATTCTTGTTTTATCTCCCCTGATAACAATGTCCACATATAGCACGTTTCTTATGAATATAATTGTTTTGCATATAATTGGTCAATAAGATGCTGTAATGCTTAACTTTCATTCTAGAAAGAAATTATATGTATACGTTTAAAAGTCTGCTTGCTGCTTGAACATTGCTAAGCTGATCTAATCTGGTTTCTATGTCACACTTTTTATCCTGAATCTTCTGTGCGAGAATGCTACATGACTGACATACTGCTTGTTTCTTATGGTCCACAGACTAGGGAAATAATAGAAGACCTGAGATCTGCTAGTGAGTTAGAAATGCAGGGCGGAAGGGGTAAATTAGGTGCTGATACCAAGACCCTTCTTAGGATCCTGTGTCATCGAGGAGAGTCAGAGGCCTCTCAGTTTGTCAAGAAGCAATTCAAAATCCCCAAATCTGGAGCTTAGTGTACTTGTTGTGCCATTGATGAGATTGTAACATAATACACTATCGAAACTTCATTTTTAAGGATCTCATTTGTCAATGAGACAGTCTGCTGCACAGATTTTTTTTCTTCTTCAGGGAATGTACTTAAAACGTAGTTTTTTGTTTACTAGTTATATGTATATGTTTAGTGTGCAGTCTTAAACCTATTTGGAAGGCATGTATACACAATTTCTGCTGTCATGGGAGAA</genome_strand>
        <mrna_strand>TAATCAACTTTGTGATGTGATAATGGAGCCACTGCGGGATCGTGTTGTAACAGGACTGCTTCAAGCATCACTG................................................................................GATGGCCTAGTCAGAGTTATATTAGATGGAGGACCATCACGTGTATTCTCCCTGGGTGATGCTAAGCTATTGGAGGAGGATCTAGAGATCTTGAAG................................................................................................................................................GAATTCTTCATTTCGGGTGGGGATGGGCTTCCTCGTGGAGTAGTCGAAAATCAAGTTGCACGTGTTCGGCAGGTGATAAAGTTGCAAGGTTATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGGGAAATAATAGAAGACCTGAGATCTGCTAGTGAGTTAGAAATGCAGGGCGGAAGGGGTAAATTAGGTGCTGATACCAAGACCCTTCTTAGGATCCTGTGTCATCGAGGAGAGTCAGAGGCCTCTCAGTTTGTCAAGAAGCAATTCAAAATCCCCAAATCTGGAGCTTAGTGTACTTGTTGTGCCATTGATGAGATTGTAACATAATACACTATCGAAACTTCATTTTTAAGGATCTCATTTGTCAATGAGACAGTCTGCTGCACAGATTTTTTTTCTTCTTCATGGAATGTACTTAAAACGTAGTTTTTTGTTTACTAGTTATATGTATATGTTTAGTGTGCAGTCTTAGACCTATTTGGAGGGCATGTATACACAGTTTCTGCTGTCGTGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579722" ref_strand="+" ref_description="SGN-U579722 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|147765421|emb|CAN64900.1| (e_value=3e-95) hypothetical; (*ATH) AT5G54750.1 (e_value=2e-92)  Symbol: None | transport protein particle (TRAPP) component Bet3, putative, similar to SP:P36149 Transport protein particle 22 kDa subunit (TRAPP 22 kDa subunit) {Saccharomyces cerevisiae}; contains Pfam profile PF04051: Transport protein particle (... ; (*SWP) sp|Q5ZI57|TPPC3_CHICK (e_value=5e-52) Trafficking protein particle complex subunit 3 OS=Gallus gallus GN=TRAPPC3; ">
      <seq>gctttaaaagtggtacaagtgtatttgtgcttatttacttgtactttctctacaaaataaaccagtaaaatcaccagcacgtatgcgttctcttcttagttagctaaatatagcaattaaccgatcgcaatagcagaggaactctcatggctcctgtggtacccagatccggagacgccattttcgccaacgtcgaacgagtgaacgcagagcttttcactctaacgtatggagcaatcgtgcgccaactgctgactgatctggaggaggttgatgaggtcaataaacagctcgatcaaatgggttataatataggaatcaggctcatagacgagtttctggcaaagtctaatgtttcaaggtgtgttgatttcaaggagacagctgaagtcattgccaaggtcggtctcaaaatgttcctaggagtgactgcaacagtgacaaattggaatgttgagggaacaacatgcagtctaattttggaggataaccccttggtagacttcgttgagctccctgatacctgtcaaggcctatattattgtaacatcttaagtggagtagtcaggggagcattagaaatggtgtcaatgaaaacagaggtcacgtggcttcgtgatatgctcagaggggatgacgcatttgagttgcaactgaagcttctgaggcaagttcctgaggagtacccttacaaagatgacgagtaacatacctccttttttatgcttgccatttggagttatacgacaatctatagcaaatgcacacacagatctctgtctattattgagtatgtttaagttctgatattgacaattttctactgatgatctatgctctgtaattttgagatctgtcctatcattcatggatttaataggcattgtcctgcttctaaatgtctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="-" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="40013" stop="36307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39713" g_stop="39511" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39510" i_stop="39398" i_length="113">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39397" g_stop="39300" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="301" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39299" i_stop="39177" i_length="123">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39176" g_stop="39077" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="401" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39076" i_stop="37993" i_length="1084">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37992" g_stop="37810" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="584" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37809" i_stop="36929" i_length="881">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36928" g_stop="36607" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="906" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="-" ref_id="SGN-U579722" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39713" e_stop="39511"/>
          <exon e_start="39397" e_stop="39300"/>
          <exon e_start="39176" e_stop="39077"/>
          <exon e_start="37992" e_stop="37810"/>
          <exon e_start="36928" e_stop="36607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTAAAAGTGGTACAAGTGTATTTGTGCTTATTTACTTGTACTTTCTCTACAAAATAAACCAGTAAAATCACCAGCACGTATGCGTTCTCTTCTTAGTTAGCTCAATATAGCAATTAACCGATCGCAATAGCAGAGGAACTCTCATGGCTCCTGTGGTACCCAGATCCGGAGACGCCATTTTCGCCAACGTCGAACGAGTGGTAAACACAAAATCCTAATGAAAAACCTTACAGTTTGAGATTTTGATCTCCATTCATTTCAGTATTAATTGTACAATTATTAGTTACGAGTATTTTGTTATTTGGTGCCAAAGAACGCAGAGCTTTTCACTCTAACGTATGGAGCAATCGTGCGCCAACTGCTGACTGATCTGGAGGAGGTTGATGAGGTCAATAAACAGCTCGATCAAATGTAATATGGTATTAGTATTTTTTTCTTCTTGAGCTAGGGTTTTTTGGTGACATTATGGAAGTGTAAAATGCAGAGTTCGTCGAGGATTTAGGAATAGGAAACTGAAGTTTGATTGAATTGCAGGGGTTATAATATAGGAATCAGGCTCATAGACGAGTTTCTGGCAAAGTCTAATGTTTCAAGGTGTGTTGATTTCAAGGAGACAGCTGAAGTCATTGCCAAGGTCTCTATCTCATTTTTATTCTAAAGAATTATATGCTGTTTGAGCTATGATTCCTTGAGTTTATTCATCATGTGAAGTTTTTTCGGAGTTATTATTTCAATTGGCTTCACAGATCAATATCCTTGTTTTATTAGGTTTCACATATTAAAAATCTCCTGGTGTATTTTTAGCTGCTGTTTAATTGTCTGCCTCTATTAGTGATAAGAAAGTGTGTAGCTTTGCTGTGCGGAAAACTGTTTCGTCAAGCATCTAAGTCATTTCTATTTGGTTTCACTAGGATAATTCCTCTCACATGACATTTGCAGTTGAATTTGTCCCTAAAAATATATCTAGAGCTTTCCCTACTGGACCATGATATTTAGGTGTGCGATAGCAATGGCAATATGAATTCCAACAAACTCAAATTACATTGCATTAAAAATGTAATCTCAAACGAGCCCATAAGAGGATGACTTCAACTACAATTTTCTATTAAATTAGCTATAAAAGTTCAATTTGCTAATTTACTTTCATATTCAACATCTATAGTAGCATTACTTATGAACTATTTTTAGTTGCCAAGGGTGATTCTATCACCATCCTAGAATTTGACCTATAAATCAAGTATTGGAGAAAAAGGAGAAAGCAAGAGAGTAGAAGAGAAAAAAAAAGAAGATGAGCCTAGAAAGAAAATGAGTCAGCTTGATGAAGAAAACAAATAAGAAAGAAGCAAATCAAGAAAAACAAGGAAGCACATGCTTATTCTGAGTTGATATACTTCACACATGTGAAAGGAGGATCTCTTGACGCACATCACTTCATTGCTTTAAGATGGAGTGATTGGGGATTGCTAGAAAGTTATGAGCTTAGCCTTCTAGTTGATATTATGGGTTAAGGAGATACATTGTACCTCCCCGGCTTCCCCTCGATATGCATGAGGTAAGAACCTTAGCTGACAAGTATTCAGTGGAGAAATTTTGTAGTGCTTTTATTGTACAGTCAATCTAATATCATGCTTCAGTGCCTTCATACTTTTGGGCCGTGTAGATTCCAGTGCTTAAAGTGTGTTTTGACCAAACATGGTTTCTTTTGCTCATGACAACAGGTCGGTCTCAAAATGTTCCTAGGAGTGACTGCAACAGTGACAAATTGGAATGTTGAGGGAACAACATGCAGTCTAATTTTGGAGGATAACCCCTTGGTAGACTTCGTTGAGCTCCCTGATACCTGTCAAGGCCTATATTATTGTAACATCTTAAGTGGAGTAGTCAGGGGAGCATTAGAAATGGTAAGTTTTGTCTCTCGATACAAACTGATTATCCAATTAATGGTATAATTTCTTGCAATGACCTGTCCTGTGCAAAACATGCATAGCTTTAATATGTATTTTTTCCCCCTCTCTAAAATGACAAGTATTATGTGCTTGAGTGTCTTTGTTTTTCTCTCCTTACTTTATTCCTCTCAAGTATAGGAAGGTTTTTAATTTTAAGCAATACGGAATGAACTGCCATGCTATTTGAGAGTCATTAAACAACGTTGGTTCCTACTCCTTCTGACTTCATGTTACAGCATATTGGTGTTCTCGTCGTAGTTCATCTTATTTATCATCTGGTCGTTATTGCATCCATGCTACAGTACATCCCCATAAATATTGATTTCATTCTCTTGCTTTGGTACCTGGAAAGAGTAAAGTGGTTATTTACATAATCTGTCATGGATAGTTGCATAGCTCTCTTATGGAAACTGGTAACTGTATTGGTTGCTCCTTAAACAAGATGTAATTACAAATAATTTCACTAAGCTTATACATGATTCTCTATAAATAGTAGTCAATCATCAATGCTTACTGGGATGTTAAAGGCCTGCCAAAAGTGTCAAAAAAAAGAAAAAGATAAAGAAAAAAAAAGGATTTCTCTATAATCTGTACATTTTTCAACTCCCTCAAACCCTTTTCTGTATGTTCCTTTCCAAACCATCCAAATATAAGGGCCAAAGGTGCCATTTCCTGGAGGAAGCTATCAAAGGAGTCAACACATTGATATGAGAGAATAATATTCTATGCAATCGTCCGGCGTTTACATGAATAACTGTGATCAGTTAAAATTTTGAGATTGTTGAATTTGTCTTGGACTAGAATTCGTTTCAATGAAAAACACTCTATTTTCCCAGGTGTCAATGAAAACAGAGGTCACGTGGCTTCGTGATATGCTCAGAGGGGATGACGCATTTGAGTTGCAACTGAAGCTTCTGAGGCAAGTTCCTGAGGAGTACCCTTACAAAGATGACGAGTAACATACCTCCTTTTTTATGCTTGCCATTTGGAGTTATACGACAATCTATAGCAAATGCACACACAGATCTCTGTCTATTATTGAGTATGTTTAAGTTCTGATATTGACAATTTTCTACTGATGATCTATGCTCTGTAATTTTGAGATCTGTCCTATCATTCATGGATTTAATAGGCATTGTCCTGCTTCTAAATGTCTCG</genome_strand>
        <mrna_strand>GCTTTAAAAGTGGTACAAGTGTATTTGTGCTTATTTACTTGTACTTTCTCTACAAAATAAACCAGTAAAATCACCAGCACGTATGCGTTCTCTTCTTAGTTAGCTAAATATAGCAATTAACCGATCGCAATAGCAGAGGAACTCTCATGGCTCCTGTGGTACCCAGATCCGGAGACGCCATTTTCGCCAACGTCGAACGAGTG.................................................................................................................AACGCAGAGCTTTTCACTCTAACGTATGGAGCAATCGTGCGCCAACTGCTGACTGATCTGGAGGAGGTTGATGAGGTCAATAAACAGCTCGATCAAAT...........................................................................................................................GGGTTATAATATAGGAATCAGGCTCATAGACGAGTTTCTGGCAAAGTCTAATGTTTCAAGGTGTGTTGATTTCAAGGAGACAGCTGAAGTCATTGCCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGTCTCAAAATGTTCCTAGGAGTGACTGCAACAGTGACAAATTGGAATGTTGAGGGAACAACATGCAGTCTAATTTTGGAGGATAACCCCTTGGTAGACTTCGTTGAGCTCCCTGATACCTGTCAAGGCCTATATTATTGTAACATCTTAAGTGGAGTAGTCAGGGGAGCATTAGAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAATGAAAACAGAGGTCACGTGGCTTCGTGATATGCTCAGAGGGGATGACGCATTTGAGTTGCAACTGAAGCTTCTGAGGCAAGTTCCTGAGGAGTACCCTTACAAAGATGACGAGTAACATACCTCCTTTTTTATGCTTGCCATTTGGAGTTATACGACAATCTATAGCAAATGCACACACAGATCTCTGTCTATTATTGAGTATGTTTAAGTTCTGATATTGACAATTTTCTACTGATGATCTATGCTCTGTAATTTTGAGATCTGTCCTATCATTCATGGATTTAATAGGCATTGTCCTGCTTCTAAATGTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578715" ref_strand="-" ref_description="SGN-U578715 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147765421|emb|CAN64900.1| (e_value=5e-38) hypothetical; (*ATH) AT5G54750.1 (e_value=9e-39)  Symbol: None | transport protein particle (TRAPP) component Bet3, putative, similar to SP:P36149 Transport protein particle 22 kDa subunit (TRAPP 22 kDa subunit) {Saccharomyces cerevisiae}; contains Pfam profile PF04051: Transport protein particle (... ; (*SWP) sp|Q86K94|TPPC3_DICDI (e_value=5e-24) Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum GN=trappc3; ">
      <seq>agttagctcaatatagcaattaaccgatcgcaatagcagaggaactctcatggctcctgtggtacccagatccggagacgccattttcgccaacgtcgaacgagtgaacgcagagcttttcactctaacgtatggagcaatcgtgcgccaactgctgactgatctggaggaggttgatgaggtcaataaacagctcgatcaaatgggttataatataggaatcaggctcatagacgagtttctggcaaagtctaatgtttcaaggtgtgttgatttcaaggagacagctgaagtcattgccaaggtctctatctcatttttattctaaagaattatatgctgtttgagctatgattccttgagtttattcatcatgtgaagttttttcggagttattatttcaattggcttcacagatcaatatccttgttttattaggtttcacatattaaaaatctcctggtgtatttttagctgctgtttaattgtctgcctctattagtgataagaaagtgtgtagctttgctgtgcggaaaactgtttcgtcaagcatctaagtcatttctatttggtttcactaggataattcctctcacatgacatttgcagttgaatttgtccctaaaaatatatctagagctttccctactggaccatgatatttaggtgtgcgatagcaatggcaatatgaattccaacaaactcaaattacattgcattaaaaatgtaatctcaaacgagcccataagaggatgacttcaactacaattttctattaaattagctataaaagttcaatttgctaatttactttcatattcaacatctatagtagcattacttatgaactatttttagttgccaagggtgattctatcaccatcctagaatttgacctataaatcaagtattggagacaaaggagaaagcaagagagtagaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="-" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="39916" stop="38136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39616" g_stop="39511" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39510" i_stop="39398" i_length="113">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39397" g_stop="39300" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="204" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39299" i_stop="39177" i_length="123">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39176" g_stop="38436" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="945" r_length="741" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="-" ref_id="SGN-U578715" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>945</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578715" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39616" e_stop="39511"/>
          <exon e_start="39397" e_stop="39300"/>
          <exon e_start="39176" e_stop="38436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAGCTCAATATAGCAATTAACCGATCGCAATAGCAGAGGAACTCTCATGGCTCCTGTGGTACCCAGATCCGGAGACGCCATTTTCGCCAACGTCGAACGAGTGGTAAACACAAAATCCTAATGAAAAACCTTACAGTTTGAGATTTTGATCTCCATTCATTTCAGTATTAATTGTACAATTATTAGTTACGAGTATTTTGTTATTTGGTGCCAAAGAACGCAGAGCTTTTCACTCTAACGTATGGAGCAATCGTGCGCCAACTGCTGACTGATCTGGAGGAGGTTGATGAGGTCAATAAACAGCTCGATCAAATGTAATATGGTATTAGTATTTTTTTCTTCTTGAGCTAGGGTTTTTTGGTGACATTATGGAAGTGTAAAATGCAGAGTTCGTCGAGGATTTAGGAATAGGAAACTGAAGTTTGATTGAATTGCAGGGGTTATAATATAGGAATCAGGCTCATAGACGAGTTTCTGGCAAAGTCTAATGTTTCAAGGTGTGTTGATTTCAAGGAGACAGCTGAAGTCATTGCCAAGGTCTCTATCTCATTTTTATTCTAAAGAATTATATGCTGTTTGAGCTATGATTCCTTGAGTTTATTCATCATGTGAAGTTTTTTCGGAGTTATTATTTCAATTGGCTTCACAGATCAATATCCTTGTTTTATTAGGTTTCACATATTAAAAATCTCCTGGTGTATTTTTAGCTGCTGTTTAATTGTCTGCCTCTATTAGTGATAAGAAAGTGTGTAGCTTTGCTGTGCGGAAAACTGTTTCGTCAAGCATCTAAGTCATTTCTATTTGGTTTCACTAGGATAATTCCTCTCACATGACATTTGCAGTTGAATTTGTCCCTAAAAATATATCTAGAGCTTTCCCTACTGGACCATGATATTTAGGTGTGCGATAGCAATGGCAATATGAATTCCAACAAACTCAAATTACATTGCATTAAAAATGTAATCTCAAACGAGCCCATAAGAGGATGACTTCAACTACAATTTTCTATTAAATTAGCTATAAAAGTTCAATTTGCTAATTTACTTTCATATTCAACATCTATAGTAGCATTACTTATGAACTATTTTTAGTTGCCAAGGGTGATTCTATCACCATCCTAGAATTTGACCTATAAATCAAGTATTGGAGAAAAAGGAGAAAGCAAGAGAGTAGAAGAG</genome_strand>
        <mrna_strand>AGTTAGCTCAATATAGCAATTAACCGATCGCAATAGCAGAGGAACTCTCATGGCTCCTGTGGTACCCAGATCCGGAGACGCCATTTTCGCCAACGTCGAACGAGTG.................................................................................................................AACGCAGAGCTTTTCACTCTAACGTATGGAGCAATCGTGCGCCAACTGCTGACTGATCTGGAGGAGGTTGATGAGGTCAATAAACAGCTCGATCAAAT...........................................................................................................................GGGTTATAATATAGGAATCAGGCTCATAGACGAGTTTCTGGCAAAGTCTAATGTTTCAAGGTGTGTTGATTTCAAGGAGACAGCTGAAGTCATTGCCAAGGTCTCTATCTCATTTTTATTCTAAAGAATTATATGCTGTTTGAGCTATGATTCCTTGAGTTTATTCATCATGTGAAGTTTTTTCGGAGTTATTATTTCAATTGGCTTCACAGATCAATATCCTTGTTTTATTAGGTTTCACATATTAAAAATCTCCTGGTGTATTTTTAGCTGCTGTTTAATTGTCTGCCTCTATTAGTGATAAGAAAGTGTGTAGCTTTGCTGTGCGGAAAACTGTTTCGTCAAGCATCTAAGTCATTTCTATTTGGTTTCACTAGGATAATTCCTCTCACATGACATTTGCAGTTGAATTTGTCCCTAAAAATATATCTAGAGCTTTCCCTACTGGACCATGATATTTAGGTGTGCGATAGCAATGGCAATATGAATTCCAACAAACTCAAATTACATTGCATTAAAAATGTAATCTCAAACGAGCCCATAAGAGGATGACTTCAACTACAATTTTCTATTAAATTAGCTATAAAAGTTCAATTTGCTAATTTACTTTCATATTCAACATCTATAGTAGCATTACTTATGAACTATTTTTAGTTGCCAAGGGTGATTCTATCACCATCCTAGAATTTGACCTATAAATCAAGTATTGGAGACAAAGGAGAAAGCAAGAGAGTAGAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583078" ref_strand="+" ref_description="SGN-U583078 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|147792327|emb|CAN70281.1| (e_value=5e-93) hypothetical; (*ATH) AT2G38730.1 (e_value=2e-93) | Symbol: None | peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative, similar to cyclophilin (Homo sapiens) gi:3647230:gb:AAC60793 | chr2:16199434-16201181 REVERSE | Aliases: T6A23.7, T6A23_7; (*SWP) sp|P0C1I3|PPIH_RHIOR (e_value=1e-70) Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus oryzae GN=cyp7; ">
      <seq>aaagttaaaggagaaagctcgcaatagtagcgcagagcaaattctccgctagtcgcagctctttctacttccaaaaatggcgtctggcggcgtgggaggaggggtggtagaatggcacctgaggccacaagtaccaaaaaacccagttgtatttttcgatgtaacaatcggcaacatccctgctggtcgcatcaagatggagcttttcgccgatattactcccaaaactgctgagaatttcaggcaactgtgcacgggagaatttaggaaagcaggagtaccacaaggctttaagaattgtcagttccatagggtgattaaggacttcatgatccaaggtggtgatttcctaaagggagatggcagtggatgtgtttccatatatggaagcaagtttgaggatgaaaactttattgccaagcacactggtcctggccttttatcaatggcaaatagcggaccaaacactaatggatgtcagttttttgtctcatgtgccaaatgtgagtggctcgacaacaagcatgtcgtttttgggcgtgttcttggagatggtcttttagtggtcaggaagattgagaatgtggctgttggagcaaacaacaaaccaaagctggcatgtgtgattgctgaatgtggagagatgtaactagtgaaaataaatgtacacctagtgatttgaaaacacccatctgtacctggttatattttcttggcatagtctagaggacctgttgagttgatttatcagctctttatctatttcatttgacattaatgattaaacttgtgaactcctctttctccagaattgtagcaaacaagaaaaatgtactggatacaagtgtttcctgtgtcaaagtacattgcaagatttttgataagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="-" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="45276" stop="39631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44976" g_stop="44734" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44733" i_stop="44289" i_length="445">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44288" g_stop="44265" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="267" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44264" i_stop="44103" i_length="162">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44102" g_stop="44015" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="355" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44014" i_stop="42482" i_length="1533">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42481" g_stop="42389" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="448" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42388" i_stop="40775" i_length="1614">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40774" g_stop="40742" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="481" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40741" i_stop="40651" i_length="91">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40650" g_stop="40594" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="538" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="40593" i_stop="40278" i_length="316">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40277" g_stop="39930" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="886" r_length="348" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="-" ref_id="SGN-U583078" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U583078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44976" e_stop="44734"/>
          <exon e_start="44288" e_stop="44265"/>
          <exon e_start="44102" e_stop="44015"/>
          <exon e_start="42481" e_stop="42389"/>
          <exon e_start="40774" e_stop="40742"/>
          <exon e_start="40650" e_stop="40594"/>
          <exon e_start="40277" e_stop="39930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTAAAGGAGAAAGCTCGCAATAGTAGCGCAGAGCAAATTCTCCGCTAGTCGCAGCTCTTTCTACTTCCAAAAATGGCGTCTGGCGGCGTGGGAGGAGGGGTGGTAGAATGGCACCTGAGGCCACAAGTACCAAAAAACCCAGTTGTATTTTTCGATGTAACAATCGGCAACATCCCTGCTGGTCGCATCAAGATGGAGCTTTTCGCCGATATTACTCCCAAAACTGCTGAGAATTTCAGGTAAAAACTCTCTCAAATTAAATAAGGTTTAAGGAATTTTTTGAATACCATTGGGGATTTTTCGTGTGTTCACTTCTTTATATTTTTGAATGCCTGAAAATCCGTCCTTCCCTAATCCAATGGATAATTAGTGGAAGGTGGTGATATTGATGTATAAGCTTAATATCCCTCAAGTTATTGTAATTTGGCCAGTTGCAATGCCTAACATAGCAAGAGTTCAAGATTTTCTTCTTAAATAATGAAAGTATGAATGAAATCCTTTAGGCACATGACATGTTAATACTTTTTCATCAGTGAGACTGTTAAAGAACTTGCCACTGGCATGATAATTTGTCTTTTATCATTGTGCTCAAAGAACATTCTTTTACTTTCAAAATCATGTTACTTATTTTTTTTTTGATCTACTAAGTTCTATTCTAAAGCTCTTTTAAATGCTTAATTGTAGGCAACTGTGCACGGGAGAATTTAGGTAAGTTTATCAAATTATGTTCGTTTCCCATTCCTTTTTTGTTTTAATTGATGCTAGTTTTATGAATTACTTGTTTTGTGAAAGGATTAGTCGGGATTGTATTAGTTTCTACTGGCTTTTGGTTATGTTGTCTAACTCATCTGCAAATCTGATATATTTTAGGAAAGCAGGAGTACCACAAGGCTTTAAGAATTGTCAGTTCCATAGGGTGATTAAGGACTTCATGATCCAAGGTGGTGATTTCCTAAAGGTTGCTTTCTCTAGCCTTAACCTTGTATTGGGATCCTACATTAAGGGTTGTTCTGGAACGGAGGTTCCCAGTTCCATAGGAATTGGGGTGACTGACGACCTTATGAAGGGCTACTGTCTGTGTGTGTGTAACCCTAACTTGTTTGACAGATACTGTAATATCTCTGAGCATCATGTTTATATACACATTACTGTTATGTCCCCAGTATTTATTGGTGCGAGCATCGCTTACACCTTCTTCGTTGCCCCATCATCTGTTCGAACCGAGCATGCTTCCTTGTTAATTCCTGCTCTCTTGGTCTGTACGTAGAATTCTTTATCAAGTATTTATTCTGAATTCAACCTGCCCTTCCCTTAGCTTTCGTTGATGCTTCATGTGAAATAAGAATTCCCAGATTATTGTACAAGTATCTTAACTTTTGCTAAGAGGATGTCAATGCAGCCTACAAGGATGGGAACTATAGATCACTGATAGAAGTCTAGGTTTCTTCATGATAGATCCTCTATCACTTATAAAATGCATAAAGTGCCACCATTTCTTTTTTTGATAAAATGAGATTTTACCAATTGCCGAGGTACTTCTGGTTCTTTCTATAAGAATATGCCTCCTGAGATTCTCTCTCCCTCCAGAAGGGTTGCTATACCCCAAATGCATCATATTCTTGTTAATCCTGCTAATTTGACTTCTAATATGCATTTAATGATGCACTACATATGTAAGAATATTAAGAAAGTACTTCTTTCCCTGGAATACGACTCTGTAAGTTTCATTAAATTCTTTCTACATGAAGATTGTGTGCTTTCTCATCTATATAACAAATATTTGCTTTGCTTGATATTTTGAATCATGATGTAGAGACAATCTCTTTAAATCATGATGTCCTTCAACTTTCTGTTTAAAAGAATTGATTCTTCACTCTAACCCTCCTCTCCCCAAATACCAATGCAGCAAAGAAGGACTGCATGAATCAGAATCTACTTATTAAGAAGAAGACCGAGAAAGAAATGACCCGTGTTCGAACATTGGTTGATATTGGCTAGCGTACTAGCCGTTGCTTCATTATCTATAGTGATAACTGATAACGACCCAAAGAAAGAAAATAAATAAAATAGAGAATTGATCCCTTCACAGTTCACTCTTAATGCTGGGTTTGTTGTTGAACTCTAAAGTTTCTAATGAATCAAAAATCACTGTTATCATATTTCCTTTTGTTCACAATCTGTATTGGATATGTTAGTCTTCTCCAAATATTTTGATTACCCTAAGGTGTAAATACAATATGTCTAAGTGTTTGTGATGGAATCAGCCAACTATTAATTACATGTGAGACTGATAAAAGCTCTTAATTATTCAGAGGTTACATATTTAGCTTTCAAATATTTTACTTCTGATCAACACAGGTATAATATAAGCGGATGACTTAGTTATAATTAACTCAGATATGACTTCTTTACTCGGTTTCGGTTGCTTGACTCAATAATATTAGCTTTATTCTATATCTCTTTTAACATTGGCTAATTCTTTTTTCTGCAGGGAGATGGCAGTGGATGTGTTTCCATATATGGAAGCAAGTTTGAGGATGAAAACTTTATTGCCAAGCACACTGGTCCTGGCCTTTTATCAATGGTATCCGGTCCTTTCATGTCTGTTGCTAATGGCATCGTGATTTTTTCTTCGTAACAAATAATTATTTTTTGCTGAATGTCAGCTTATACTTTCATTATTCTGCTTTGCAAGTTGTTTAACTTGATGTAAGTGTAACTGCATAATATATACTGATGGGGGGAACTGTAGTATGGAGAACCTGAGTTGCAAAAAAATAAACTTTTTGACTCTACTCTTCTAAAAACAATTACTCTTTGGTGTCTCAGATCCCCCATGCACCTGAGCAAGGTGTAAGAATAAAATAAAAGCCTGAGCTGATCAGAATTGATTTTCCGCCTTTTTTCTTGACCATGGTGCCTGGGACAACTTTCGTGCACTTCGACTAATTCCAGAGGACACATGACACGTGACACCTCCCACCTCCCACTAGCAATAGGTATCAGGCGGCTCTGTTCATCAAGACTAGGACAGATGACAAGAATCATTTGTCAATGCTGGGATCTTAGACCTCAAGGCTCTCAACCACTTCATTTATTATTAGGCCACACACTTTTGGGTGCAATTGATTTACCACCCTTAAAGAACTTTTCAATCCCTTTCCTGACAGATACACCAAAAAAGACAGTTTTGATCTACTGTCATAACTTTTTTCTCATCCCCTCCCCAATACAAGACCAGTCATGTAGGACCCTTTATGTTGCTTGCATTACCAGAAAATCCCTGTCAGATTGAAATACAGCACCAAACATTCAAATTCTATTACCATAGAGGAAGAGGAGGAAACTTTTTACAGAACAGTGACCAGAAATTCAACGGTCAGAGGAGGGATTCAATACCCAGAGTCTGGTGTCATAGAGAAGGAATAGAGAAAGTAACAACGAATAGAAATTCAATATTCTGAGTAGGGAGACAATGCTAAATTATAATATCACAGAGAAAAGAGAAAAGGTGACTTTTCTGGAATTTGAAATTTAATGATTAGACTAAAAGATGAGGGGTCCTTCTCAAAAGAAAAAATAATCAATGTTAAGATGATGGACTCAGTACCCCAGCGTCACTATTTGAAAAGAAAAAAAAAGAAGAGAAAAGGTGTTTGCCTAATATTTTGTCCGCGAAGCGTTGGAAGGATGCCCATGTGGACAGAAGAAGTGATGCCTTAGGAATGATCACCTAGGAAAGGCTCGCGCCATTGGAACAATCATTTGAAAGCACAATCTGTCAACAAAGGTCTCAGATAGTGTACTTGAAGCCTGGATTTTTCCTGCAATAGAAGGGCTGAATATTCTGGTTAAAACAGTTGATGAGATGGTTGAGTCCATGAAGGATAGGTTTGAAGAAGAATAAGATCTACGTGTGTCCGTGAGTTTGTGAAAGCAGCCAGATAGTTAATTTGCCAAGCTAATATGGAATAGAGGTGATTTTACCTTGGATGTGTCAGAATTGTGTTTTTGATGGCATAGACACTTACTATGAATATACTTTATTTCATTATCTTCATATCTGTTCAGAGTTTTTGTACACAATTGTATCAATTTAAATTACTTAAAAAGTGTTTTAACAACTGTGTGAAAGTATTCTTCAAGTGCATTCTTACCTTCTATTTTGACGTAAATTACAAAATCCTTATTTTGGCAGGCAAATAGCGGACCAAACACTAATGGATGTCAGGTAAGTCATAAGGATGATTCATCTTATCCAGGAAAAAAGTGGATTAGATCACAAAGCCTATGTTTCTGATTCTGCTGTTTGCTCCATGCAGTTTTTTGTCTCATGTGCCAAATGTGAGTGGCTCGACAACAAGCATGTCGTTTTTGGGGTATGCTTTGCTTTCACCCTAGCCTCTGGCATTTCTAGGATTTTGTCCTTGACATTGTCTCTCATCGTCTTCTGCTTATCATGACTAGTCACTTAATACATTCCTTATTTTAGAGCCAGATACTGCATACCAAAGTTTCATCAGATTCAGTTATGTTCTTTTACATAAATTATATCAAATTCACTCTGATAAACATATCAAGCTACGAGTTTTTCCATTTTGTCAACCATTTGTTTCATCTAAAACAAGAAACTTCTTATTAACTTCTTCTCCATTGTTATGTGATGAAATTTTCTTTTTCCTGCTTTCTTCACAGCGTGTTCTTGGAGATGGTCTTTTAGTGGTCAGGAAGATTGAGAATGTGGCTGTTGGAGCAAACAACAAACCAAAGCTGGCATGTGTGATTGCTGAATGTGGAGAGATGTAACTAGTGAAAATAAATGTACACCTAGTGATTTGAAAACACCCATCTGTACCTGGTTATATTTTCTTGGCATAGTCTAGAGGACCTGTTGAGTTGATTTATCAGCTCTTTATCTATTTCATTTGACATTAATGATTAAACTTGTGAACTCCTCTTTCTCCAGAATTGTAGCAAACAAGAAAAATGTACTGGATACAAGTGTTTCCTGTGTCAAAGTACATTGCAAGATTTTTGATAAGA</genome_strand>
        <mrna_strand>AAAGTTAAAGGAGAAAGCTCGCAATAGTAGCGCAGAGCAAATTCTCCGCTAGTCGCAGCTCTTTCTACTTCCAAAAATGGCGTCTGGCGGCGTGGGAGGAGGGGTGGTAGAATGGCACCTGAGGCCACAAGTACCAAAAAACCCAGTTGTATTTTTCGATGTAACAATCGGCAACATCCCTGCTGGTCGCATCAAGATGGAGCTTTTCGCCGATATTACTCCCAAAACTGCTGAGAATTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTGTGCACGGGAGAATTTAG..................................................................................................................................................................GAAAGCAGGAGTACCACAAGGCTTTAAGAATTGTCAGTTCCATAGGGTGATTAAGGACTTCATGATCCAAGGTGGTGATTTCCTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATGGCAGTGGATGTGTTTCCATATATGGAAGCAAGTTTGAGGATGAAAACTTTATTGCCAAGCACACTGGTCCTGGCCTTTTATCAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATAGCGGACCAAACACTAATGGATGTCAG...........................................................................................TTTTTTGTCTCATGTGCCAAATGTGAGTGGCTCGACAACAAGCATGTCGTTTTTGGG............................................................................................................................................................................................................................................................................................................................CGTGTTCTTGGAGATGGTCTTTTAGTGGTCAGGAAGATTGAGAATGTGGCTGTTGGAGCAAACAACAAACCAAAGCTGGCATGTGTGATTGCTGAATGTGGAGAGATGTAACTAGTGAAAATAAATGTACACCTAGTGATTTGAAAACACCCATCTGTACCTGGTTATATTTTCTTGGCATAGTCTAGAGGACCTGTTGAGTTGATTTATCAGCTCTTTATCTATTTCATTTGACATTAATGATTAAACTTGTGAACTCCTCTTTCTCCAGAATTGTAGCAAACAAGAAAAATGTACTGGATACAAGTGTTTCCTGTGTCAAAGTACATTGCAAGATTTTTGATAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565390" ref_strand="+" ref_description="SGN-U565390 Tomato 200607#2 [8 ESTs aligned] ">
      <seq>gattaactactttctagttgaattctaaggttctagcaatcaagttagttgtcgataaactaatttgagattgaagcgtagttatgataatgaataacaagaaacaaaagagaaaagacggttataaatcgaagaagtcaaatttcaaagttgtgtacatttctactccgatgaaagttaagacaagtgcctcgagatttaggtcacttgtgcaggaactaacgggacgggactcggatatagcgagaattatggagactaatgggtcgataacggagtatgaagatattcacagtgaacgggatgactttaatgaacttccagtaaaatcgtcatcaccatcatcatcgtctttgctagcaaaatcatctaattcaactcctatgagttcagaatctgataattattttatcgagcctaattttgatgatttatttaatagccaaatgcaagagcaattccttgcttttttagcttcatcaaactataatttgccacctagaagtggtgattatttagctgagattgatgttctcggaagctatgatgcactactttagatttattttatttttggataattagttcggtgggtagatatgatcgacttaattagtagatatatgtatgtatatatgtattttttttaatactaagtggatattatttagatggtgtactgtatcatcattataacatatatatagatttggaaaaccttcgttatgaagagaaaaaaaagagtatgagttataaatatttattattagtagaaagatttataaaaatatttctccggttatttacggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="+" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="48066" stop="49476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48365" g_stop="49176" g_length="812"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="812" r_length="812" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="+" ref_id="SGN-U565390" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48365" e_stop="49176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAACTACTTTCTAGTTGAATTCTAAGGTTCTAGCAATCAAGTTAGTTGTCGATAAACTAATTTGAGATTGAAGCGTAGTTATGATAATGAATAACAAGAAACAAAAGAGAAAAGACGGTTATAAATCGAAGAAGTCAAATTTCAAAGTTGTGTACATTTCTACTCCGATGAAAGTTAAGACAAGTGCCTCGAGATTTAGGTCACTTGTGCAGGAACTAACGGGACGGGACTCGGATATAGCGAGAATTATGGAGACTAATGGGTCGATAACGGAGTATGAAGATATTCACAGTGAACGGGATGACTTTAATGAACTTCCAGTAAAATCGTCATCACCATCATCATCGTCTTTGCTAGCAAAATCATCTAATTCAACTCCTATGAGTTCAGAATCTGATAATTATTTTATCGAGCCTAATTTTGATGATTTATTTAATAGCCAAATGCAAGAGCAATTCCTTGCTTTTTTAGCTTCATCAAACTATAATTTGCCACCTAGAAGTGGTGATTATTTAGCTGAGATTGATGTTCTCGGAAGCTATGATGCACTACTTTAGATTTATTTTATTTTTGGATAATTAGTTCGGTGGGTAGATATGATCGACTTAATTAGTAGATATATGTATGTATATATGTATTTTTTTTAATACTAAGTGGATATTATTTAGATGGTGTACTGTATCATCATTATAACATATATATAGATTTGGAAAACCTTCGTTATGAAGAGAAAAAAAAGAGTATGAGTTATAAATATTTATTATTAGTAGAAAGATTTATAAAAATATTTCTCCGGTTATTTACGGATA</genome_strand>
        <mrna_strand>GATTAACTACTTTCTAGTTGAATTCTAAGGTTCTAGCAATCAAGTTAGTTGTCGATAAACTAATTTGAGATTGAAGCGTAGTTATGATAATGAATAACAAGAAACAAAAGAGAAAAGACGGTTATAAATCGAAGAAGTCAAATTTCAAAGTTGTGTACATTTCTACTCCGATGAAAGTTAAGACAAGTGCCTCGAGATTTAGGTCACTTGTGCAGGAACTAACGGGACGGGACTCGGATATAGCGAGAATTATGGAGACTAATGGGTCGATAACGGAGTATGAAGATATTCACAGTGAACGGGATGACTTTAATGAACTTCCAGTAAAATCGTCATCACCATCATCATCGTCTTTGCTAGCAAAATCATCTAATTCAACTCCTATGAGTTCAGAATCTGATAATTATTTTATCGAGCCTAATTTTGATGATTTATTTAATAGCCAAATGCAAGAGCAATTCCTTGCTTTTTTAGCTTCATCAAACTATAATTTGCCACCTAGAAGTGGTGATTATTTAGCTGAGATTGATGTTCTCGGAAGCTATGATGCACTACTTTAGATTTATTTTATTTTTGGATAATTAGTTCGGTGGGTAGATATGATCGACTTAATTAGTAGATATATGTATGTATATATGTATTTTTTTTAATACTAAGTGGATATTATTTAGATGGTGTACTGTATCATCATTATAACATATATATAGATTTGGAAAACCTTCGTTATGAAGAGAAAAAAAAGAGTATGAGTTATAAATATTTATTATTAGTAGAAAGATTTATAAAAATATTTCTCCGGTTATTTACGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565840" ref_strand="+" ref_description="SGN-U565840 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157333768|emb|CAO17990.1| (e_value=9e-76) unnamed; (*ATH) AT5G23450.3 (e_value=6e-57)  Symbol: None | similar to diacylglycerol kinase family protein [Arabidopsis thaliana] (TAIR:At4g21540.1); similar to putative sphingosine kinase [Oryza sativa (japonica cultivar-group)] (GB:AAP54628.1); similar to OSJNBb0103I08.5 [Oryza sativa (japo... ; (*SWP) sp|Q9LRB0|LCBK1_ARATH (e_value=6e-56) Sphingoid long-chain bases kinase 1 OS=Arabidopsis thaliana GN=LCBK1; ">
      <seq>gctcatgtttggtagatgagagaaagtggacggaaaaagcgatttctcatttctctgtgttttcctttctctaccatatgtgaagtatatcgggtcatttctcttctccgctcatcggctcccccgtgaactgccgtcgtgccaacttcaggacgcatttgtttccgatgagattttcactgcaaacatcaattaaggatttcgattttcatcagagcacacgagaaccgtagattttgacctcaaaaaccctagcaatcaggtttggtgtttctgctggatgtgaattttaggccttgaattagctattttctggatcttgatacattagcactatagctacccgttattgttcagttgtattctctctcttttgctcagccggcagaaatatgcagaagagtgggaatcttgttaaaaataattctttgaaaattacaactcagcagtctcttcgacgtcttggtttatgttcccagattacatctgggcagcattcatctccggttgttttccctgaaaaacgaagcaaaggaaggagtctgacacgtggagaacttagtctgagtaataatgattctaagaaagagaaaaatgaggagcataggattgacattggggatgagcagtctgacctgcttggatatgaagtattttctggaaagctggttttggacaagggaaagacatataaaaattcggagttagaagcctcaaaggaggttactagccaggatgctgttgaagccaaacttacgagcaaggctatggtttggggttctagtatgctgcatctagaagatgttatttcggtatcacactgtcctggactccggcatttcaccatccattcatatcctctgagaagaggttccggtgctctttcttgttttttaaaatctcgaagaagtcagaaggacttccgcttcttagcttcttcatccgaggaagcacttcaatgggtaaatgcatttgcagatcaacactgttatgtgnatttactgcctcatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="+" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="53338" stop="55443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53638" g_stop="53899" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53900" i_stop="54300" i_length="401">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54301" g_stop="54850" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="812" r_length="550" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54851" i_stop="54942" i_length="92">
            <donor d_prob="0.619" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54943" g_stop="55143" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="1013" r_length="201" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="+" ref_id="SGN-U565840" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1013</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53638" e_stop="53899"/>
          <exon e_start="54301" e_stop="54850"/>
          <exon e_start="54943" e_stop="55143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATGTTTGGTAGATGAGAGAAAGTGGACGGAAAAAGCGATTTCTCATTTCTCTGTGTTTTCCTTTCTCTACCATATGTGAAGTATATCGGGTCATTTCTCTTCTCCGCTCATCGGCTCCCCCGTGAACTGCCGTCGTGCCAACTTCAGGACGCATTTGTTTCCGATGAGATTTTCACTGCAAACATCAATTAAGGATTTCGATTTTCATCAGAGCACACGAGAACCGTAGATTTTGACCTCAAAAACCCTAGCAATCAGGTTGGTATCCTCTTCTTTTGGTTCTTTTTATTTTGTGTTAGTGTCCGTGTTTTGGAAGGTGGAACGCCTAAAGCTAATCTCTGGTTCGTCAATTTTAACCGTTTTGGTGACATTTTTCTTTGCTGGGATCAATTTTGGTTGTATTGATCTAGAGAGTGATGTGCTGCTTGCATTTCGTTATGATTTAGTGAATGTTTTCGTAAATATGCAGGTTGTGATGTTGTGAGACTACAGTTAGTTTTTGGCCTGACAATTTTAGTCGATTGGGTGGTTGTTTTCTTGATGAATTCTGCTTATTCTGATCTGGAGAGTGTGGTTTTATTGGTTTGCTTTGTTGGCATGTAATGGTTTAGTGATTTTCCCCGCAATGTATTCACTAATTTTAAATTATCATGATGCAGGTTTGGTGTTTCTGCTGGATGTGAATTTTAGGCCTTGAATTAGCTATTTTCTGGATCTTGATACATTAGCACTATAGCTACCCGTTATTGTTCAGTTGTATTCTCTCTCTTTTGCTCAGCCGGCAGAAATATGCAGAAGAGTGGGAATCTTGTTAAAAATAATTCTTTGAAAATTACAACTCAGCAGTCTCTTCGACGTCTTGGTTTATGTTCCCAGATTACATCTGGGCAGCATTCATCTCCGGTTGTTTTCCCTGAAAAACGAAGCAAAGGAAGGAGTCTGACACGTGGAGAACTTAGTCTGAGTAATAATGATTCTAAGAAAGAGAAAAATGAGGAGCATAGGATTGACATTGGGGATGAGCAGTCTGACCTGCTTGGATATGAAGTATTTTCTGGAAAGCTGGTTTTGGACAAGGGAAAGACATATAAAAATTCGGAGTTAGAAGCCTCAAAGGAGGTTACTAGCCAGGATGCTGTTGAAGCCAAACTTACGAGCAAGGCTATGGTTTGGGGTTCTAGTATGCTGCATCTAGAAGATGTTATTTCGGTAAGGTTCTTCAAGGGATTATGGGTTTTTGTCAGAATTTGTATCTCTTCCATTTTAGTTTTGCTAAGCAGTAGGTTCTGCACGTACCACAGGTATCACACTGTCCTGGACTCCGGCATTTCACCATCCATTCATATCCTCTGAGAAGAGGTTCCGGTGCTCTTTCTTGTTTTTTAAAATCTCGAAGAAGTCAGAAGGACTTCCGCTTCTTAGCTTCTTCATCCGAGGAAGCACTTCAATGGGTAAATGCATTTGCAGATCAACACTGTTATGTGAATTTACTGCCTCATCCT</genome_strand>
        <mrna_strand>GCTCATGTTTGGTAGATGAGAGAAAGTGGACGGAAAAAGCGATTTCTCATTTCTCTGTGTTTTCCTTTCTCTACCATATGTGAAGTATATCGGGTCATTTCTCTTCTCCGCTCATCGGCTCCCCCGTGAACTGCCGTCGTGCCAACTTCAGGACGCATTTGTTTCCGATGAGATTTTCACTGCAAACATCAATTAAGGATTTCGATTTTCATCAGAGCACACGAGAACCGTAGATTTTGACCTCAAAAACCCTAGCAATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTGTTTCTGCTGGATGTGAATTTTAGGCCTTGAATTAGCTATTTTCTGGATCTTGATACATTAGCACTATAGCTACCCGTTATTGTTCAGTTGTATTCTCTCTCTTTTGCTCAGCCGGCAGAAATATGCAGAAGAGTGGGAATCTTGTTAAAAATAATTCTTTGAAAATTACAACTCAGCAGTCTCTTCGACGTCTTGGTTTATGTTCCCAGATTACATCTGGGCAGCATTCATCTCCGGTTGTTTTCCCTGAAAAACGAAGCAAAGGAAGGAGTCTGACACGTGGAGAACTTAGTCTGAGTAATAATGATTCTAAGAAAGAGAAAAATGAGGAGCATAGGATTGACATTGGGGATGAGCAGTCTGACCTGCTTGGATATGAAGTATTTTCTGGAAAGCTGGTTTTGGACAAGGGAAAGACATATAAAAATTCGGAGTTAGAAGCCTCAAAGGAGGTTACTAGCCAGGATGCTGTTGAAGCCAAACTTACGAGCAAGGCTATGGTTTGGGGTTCTAGTATGCTGCATCTAGAAGATGTTATTTCG............................................................................................GTATCACACTGTCCTGGACTCCGGCATTTCACCATCCATTCATATCCTCTGAGAAGAGGTTCCGGTGCTCTTTCTTGTTTTTTAAAATCTCGAAGAAGTCAGAAGGACTTCCGCTTCTTAGCTTCTTCATCCGAGGAAGCACTTCAATGGGTAAATGCATTTGCAGATCAACACTGTTATGTGNATTTACTGCCTCATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570735" ref_strand="+" ref_description="SGN-U570735 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|57281695|dbj|BAD86587.1| (e_value=2e-76) sphingosine kinase [Lotus corniculatus var. japonicus]; (*ATH) AT5G23450.2 (e_value=1e-76) | Symbol: None | diacylglycerol kinase family protein, contains INTERPRO domain, IPR001206, DAG-kinase catalytic domain | chr5:7904756-7909560 REVERSE | Aliases: None; (*SWP) sp|Q9LRB0|LCBK1_ARATH (e_value=1e-75) Sphingoid long-chain bases kinase 1 OS=Arabidopsis thaliana GN=LCBK1; ">
      <seq>tattccatcgcaaggttgaacctatattcaagcttgctgggtttaagttggaagtagtcaaaaccacatctgcaggtcatgctaggaaacttgcaagcacagtagacttcagcacatgtcctgatggtattatatgtgttggaggtgatggaatagtgaatgaggttttaaacgggttactcactagggataaccagaaagaagcaatttcggttccaattggaatcattcctgctggttctgataattctttggtctggaccgtgcttggagttagagatccagtgtcagctgcaatagcgattgtcaagggagggcttacacctaccgatgtttttgctgttgaatgggttcaaagtggtagaattcactttggatcgactgtcacctactttggctttgtgagcgatgtgctggaactatctgagaaataccagaagcggtttggtccattgcgctactttgtcactgggttcctcaaattcatgtgcttaccaaagtacaattttgaagtggagtatcttccagcactgaaagaagctatctggagaaggaaaagcttcggtcattgatatgtctgaactgcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="+" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="54980" stop="61932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55280" g_stop="55311" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55312" i_stop="56573" i_length="1262">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56574" g_stop="56667" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="126" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56668" i_stop="56766" i_length="99">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56767" g_stop="56804" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="164" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56805" i_stop="58131" i_length="1327">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58132" g_stop="58278" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="311" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58279" i_stop="59799" i_length="1521">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59800" g_stop="59899" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="411" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59900" i_stop="61455" i_length="1556">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61456" g_stop="61632" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="589" r_length="178" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="+" ref_id="SGN-U570735" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55280" e_stop="55311"/>
          <exon e_start="56574" e_stop="56667"/>
          <exon e_start="56767" e_stop="56804"/>
          <exon e_start="58132" e_stop="58278"/>
          <exon e_start="59800" e_stop="59899"/>
          <exon e_start="61456" e_stop="61632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCCATCGCAAGGTTGAACCTATATTCAAGGTATGCTCTAGAACTGTAATATCTTGTTGTCTATCTGGCAATTTTTTTTGCTCCTCTAATTGCACGACGATAATTTCTTCTGAAAAGGTAAGCTAAATGCATCATAAATTGTATAGTGGTTTTGGATGTAAATGAAATAAGTTGTCTCTCTAATTTTCTCTTAGTACCAACCATCCTTTTACCCTTGAAAGCGATGCTTGTTCATTGTGATATGCAGGCTATATGATGTCTCCCTACATAACCAATGGCCATTATTACTTGTTTACTAGTGTTTATCCAATTACATAGTTGCTTATTTTCTTGTCCACAAGTCTTTTATGTTTTCTCCCGTCCCCAACTGTCAAACTTGCAAAATACAACTATACCTAACAACTACGCCTCATCCTAAGTTAATTGGGGTTGGCAAAACTTACAACATGTCTGGGAAAGACAAATACAGATTTTACGTCTCCAAAAAAATTAATACATGCAGATGTTTCTGGTTTGATGACCATGGTGTCCGTACCAACTTTCACGCACCTCGATCAATTCCACGTGATACTTGCCGCCTCCCAACAACATGTATCATGTAACTGTGTTCACCAGGTCTAGGATAGATGGGAAGAATCACTTAGTGATTTTTGTCTCCGCTTGGTTTGAACTTGAGATCTCATCGCTCTCAACCATTTCATGAGCCACTAGCCACAACCTTGGGTGCTATTAATCTATGTAAATATTGTCATCTGAAAAATTATTTTTTTTGATAATTGTCATCAAATAATTCTTAACAAATCACATCTTCTCAATTGTGAAATGCAGAGTCTCCATTTACAAAATCATGTGCCTTTTCCAAGTTCAGTTGCTTCTTTTTCATTTTTATGTGAATCGACTCGTTTGTGATTGATGCTGTTGTATGTCCAAAAAGAGAAGCACCGTTGCAAAAACATTTAGATGGTTTTTGCTGGATTTATAGGTTTCAAGTCTTTAGTGTTCAAATAACATATTTTTTCCAGAATAAGCACTTTAAAATATGCTCTTAAGGAAGAATTTTTCATGTGATTTGTCGTGGGAGTCAATTGTGGATATTACCACTTGATTTCATAAGGTGCAGATTGAGGAAGTTCTGATTTAGTCACGTATGCCTTCTGTTGTGCATCCTTGAGATTCTCATTGTTTAGAATTTCTTTTTGGTGGTCCTCCAATCCAGCAAATCATCTCAGACTGGATATCCTTGTTCGTTCTTGTTGACTCAAGTTTTAGCTCTGTTTCTATTGAATTAACAGCTTGCTGGGTTTAAGTTGGAAGTAGTCAAAACCACATCTGCAGGTCATGCTAGGAAACTTGCAAGCACAGTAGACTTCAGCACATGTCCTGATGGTATTTATGCTTTATAAATTTTCTGTTATTCAGTTTTAGATGTCTTAGATTATCTTCATCATTGTTTTTCTTATGTTCTCTGATTTGCAAAATGTTCAGGTATTATATGTGTTGGAGGTGATGGAATAGTGAATGAGGTTAGTTATGTCTCTCTTTCTCAAATTTCACAAGTGGCAAGTGTGTATGGTTGAATGTTTGCTTATATAGTTCAATGGGTCTCATTTCTTGCATCAAGAAGTCATTTGCTAAGCTAATAAGGGTTTTTTGAAGTAGCACTAAATTGAGAGAGCTGTTGTGGCATAATTTAGGTGTACATAGAGTTACTTGATTCGTTACACTTCTTTCGCTTTAGGATAGAAGCAGCCTTTGTGAAAGTGTAATTTCCTTTACCCTGTAAAACAAACTGGAAGGTCTGCCAATTATGGCCATATGTTTTTCTATGAAGATAGTGCTGCATTTATTAAGTATGGGAATTGTATGTATGAGTATCTCAGTTTCACCTGAGCGGCCAATCTTATTAAAGGGTATGCAAAAAGGCTAAAGAACATGAAAGGTACGATCCCTATTTTTGAAATTTAGCAAAAATAAACGCCCTTTGAGGCCTCTCTGGTGGAATTTCACTCCCTTTTTTTTCCCAAGCAAGTAATAGTCATTGACAAAAGGGAGAAGATCATTTATACAAGAAGTGGAGAGTGTACAAAGCCTATATAAAGGGGTTTCTCTCCATGGAATCTGACCAATCATCTTTAACACGCTGGAAGATCATTTGTGATCCAAAAGATATACACAGTTTGAGGAGTCCTCGGTTTTTTTAATTGTTGTATCTTCCTTTAGCTTTCATGCCGAGGAAACAGGGGAAGAACTGACCCTGTAAAGATCTAGTATAAAGGACATAAAATCAAAAACTAATTCGAGAAGGGCTACAAAACCAATTTACCTCTTTCCCGCTTTTTGCAATCTCATTGCTACTTTTCTTTTTCTTTACAATCAGCCTCTTTTTTATTTAATAGTTTCTTGAGTTTCTTAGTCATTACTTGATTCAAGGGTCTTTTGGAAACAACCACTTTACCTCCACGAGGTAGGGGTAGGGGTAGGGTCTGCATACACGCTTACCTCCCTAGACTCCACTTGTGGGATTACACTAGGTATGTTGTTGTTGAGCTTCTTAGTCACCCTATATATGACTTTTGATTATGTGTTAAAATAAAATTTTCACATTTTCAGAGCTATGGCCTTAATACAACTAATGCTATTGTTTCTTGACATTGTTGATGATAACAAGGTGGCTTTACTATTGTTTCTTGAAAATTTCTGAAATGCTAACTTAGTCATTCTGAACCAAGAAGTGAACTGTACTAATATCTGTTGGTTGATACTTTAAATATGTGCTCAGAGTTGATTAATATTTCTCACTTCGTCTAGAAAAATATGTTAAACTTGCTTAATGTAGCTTTTCTGATTCAGGTTTTAAACGGGTTACTCACTAGGGATAACCAGAAAGAAGCAATTTCGGTTCCAATTGGAATCATTCCTGCTGGTTCTGATAATTCTTTGGTCTGGACCGTGCTTGGAGTTAGAGATCCAGTGTCAGCTGCAATAGCGATTGTCAAGGTATGTTTTATCTTTCGTCAATGCATCTTCATGCTAATTATAGATTTCAACTCGGCGGATAGTTGAAAATATACATTTCCTTTCCTAAAGAGAAGTATTTGAAATAACTTTGATTTGATTTCTTTGAGCTACACAGATATAATATTGTTACTAGTCTAAAAAAAAAGAACAAGAAAAGAGAACTTTGATTTAGATGATCTGTTCAGACTTTGGACAAGCACTATTTAGTAAACTGATACTGATGGATCATGCTCCCGACTCTCAGATAGGACAGTTAAATTATGTTTGTAATGATGTCTCAGAAACATAAATGAATGAGTATAGTGATCACTGACATCATGCATGATAGGGACTTGCCTTGTGACCTTTTCTAAATAGATACTTCCTGGACCTTGACTAGTGTTCTACCCTGTGATACCTTTTCTCGTTTTGTCTCTTTGCAATAGGACTGAGTCTTGATGTTTATTGTTGGAGTTCATTTACAGTGATGATGAATGGAAGATGTTACGAGCATCACATGGAAGTACAACTAAATTTTGCTAGTTAATTTTTTAGCAAACCATTCACATTCTAAGGCATGACTTTAGTCGAAAGTCCCATACTACTGCTTGTTTTCAGTTGTGAACTTGAGTTGGAAGTGGTGATGAATTTGTGACCATCTTATGTATCTTGTCATGAAGGTTGAAATTAATATAGCTGGAAGTTAGGTCTTTATGATGGAAGCAGAAACTTCATATAAGAGTCAGGTAGTGAGTTATTGAGCACTGCTTTGAATTTGCTTAGCATACAATGGACTACCATTACCGCTCAGAGGGCTGTTAGTAGGAAGGAGAAATATGAATGGGAAGTGGTCCCTCTAGCTCCTATGTGGACAAGCTGGAGGGAAAATTATAGGTAGATTTCGAAGGGGTGGAAAACTCTTCTGTACAAATTAGTGAGTCCCAGTTCAAATGTATAATTTTGGTGCACCTATGAAAATCCATCTAGCAGTAGATGATTGGATGCTATTTGTAGAGAATCACACTTTTGCTTCGATTTTCTACTTTGTTAATTCTATTTGTTCCACAAAAAAATCCCAAACAATAGAATTATTACTTGATAACTATAGATAACTTTCTCAAAGCTAAGAACAGCTTTTGTTTTGGTCAGGTAGTTTCTTTTAGAAGACTGGTTCTATTCGTCTGCTCTAGATCTTTAGTCTTTCCCAGGTTTATTGTTCTGTCTTCTCAGGATTTTAAAATCATTGATATTTTTTATTCTGTGTAGTTTCTTTTCTATTAATACTTTCTTTTATTTTTTCTGTGGGTTAAGTAGAGAAAGACCCTCCTCTAATGCTCTCACTCAGAGGCATTTATTTCACGAGTGGAACCTGAATAAATCTAATAAATTTGGACTTTCAGTATTTTCCACTAAAAAGACGTATGAATAGAAAACCAGATATCTGAAATGTTGTTCAAAATTTTTCATTACTGTAGCTAGGTTATCTATTCCTCATATGTATTGTCGGTTTCTTTTTTTCAGGGAGGGCTTACACCTACCGATGTTTTTGCTGTTGAATGGGTTCAAAGTGGTAGAATTCACTTTGGATCGACTGTCACCTACTTTGGCTTTGTGAGCGATGGTAATTTGGTTCATCTTTTTTTTCCCTAGCAGTTATTGATGTCTATGCCTTACAGTAACTTTTGTTATTTAATTAATCATGTTGTTTGAACACTTCTGTCATTGTTACCTACACGAATGCAGATGCTTGAGTAGCGTAAGATAAGGACTCAGATACATAAGAGGAAATATTTTGGAAAAGTACGGGACACTTTGCCCCCAGTACGTGATTTATAAAAACTGGTGAACCTTAGAACATGGTAATGCTAGAACAGGTCGCCCCAGAGCGTCGTTCCATCTTCTGACAAAGGTTTTTTTCATTTTATGGCTTATGGTTACTTCTTGTAGAGCAATGAGTTAGTCTTAAAGACTAATGTGAGTTATATTGGAGCATTTCTTCCATGGTCTTGGACTGCCATGCTTCCTGCGTCTTGGATCTTTAGGACCCACCAGATTTAATGATTCTGAATGCCGGGACCATGGAGGCCTAGGGTATGGGAGTACTTTGTGTCGTATTAGGGTATAGGACAAATTACTGGTAATAACTCATGGATAGCCTGTTGATTGTGTTGAAATGGAAGATTTACGTGTAACTTGGAGGAAAATTGGGTCACGTAACATGATAAGCAAGGTGTTATGCTTTACATACCTGATTTACTTACATTTTCAGAAACCTTATGGAGTTCAAGTGTTACGAGTTAGCAACTCTAGAGATAGCATTTGACCCTATTGTACCAGGGTCTGCTTTGTCATATTCTGCTAATTTGTCTCATCAGTATGCTTATTATTTTTTCCAAGGGAAATAACATTGTCGATTTGAACTAGTAGATCTGTTAGGATCTCTGTAAGTAGCTTCCTCCTACTCTTTTTTTTTTGGGCTTCTTTGTGATTGTCTCCAGCATATCCTTAATGCTGAGGAATTCAACGTTACCAATTTCTTTTTAAGAAATAAGTTTGATTATCGAATGCAAAATGCTAGTGGAGGCTATTGTCGTGAAGCTTTTAATGCTTGCGACTCAATATTCATGTTTCTCGGCGCATGATTATTTTTCCTTACATAAGATGCATATGCACTTGGTATATCCAGCATGACATTGCTTATGGATGTTTAGATTAAGTCTGCACCAACTTGATACCTTTATGTAGCAATTTGTGGATGACGTTAAGGATTTAAGATTAAGTAATTTTTAGAATACAGAAGGTTGGTCTGGTGATTGAAAAGGTTGGCGTGTTGGGCTTTGGTCTAGTGGTGAGAGCGCAACGCGTAATGTGTGGGTTAGGTGCATGTCACAGGTTTGAAATGTGTTGCTATCAGAGCTTGGTATTTAAGTGGATAAGGTTAAAGAGACAACCCCTTTATCTCCTTAATTTCAAATTATGAGCCACTGGTCTTTGAGGATTTCTCGATTGTTAAAAAAAGAAAATAAATAAAAGGTTGACGTCTGTGTAAATTCTTTACTTTCCATGGTTGTTGGCTGTATCACTAGTCTTTCACATGGATATCTAGTATTTACCATTTAATATTTTTATCTGAATTGCATATATTTTCCGATAGTTGACTTCAATTGTCTATTGTAGTGCTGGAACTATCTGAGAAATACCAGAAGCGGTTTGGTCCATTGCGCTACTTTGTCGCTGGGTTCCTCAAATTCATGTGCTTACCAAAGTACAATTTTGAAGTGGAGTATCTTCCAGCACTGAAAGAAGC-AACTGGAGAAGGAAAAGCTTCAGTCATTGATATGTCTGAACTGTATA</genome_strand>
        <mrna_strand>TATTCCATCGCAAGGTTGAACCTATATTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTGGGTTTAAGTTGGAAGTAGTCAAAACCACATCTGCAGGTCATGCTAGGAAACTTGCAAGCACAGTAGACTTCAGCACATGTCCTGATG...................................................................................................GTATTATATGTGTTGGAGGTGATGGAATAGTGAATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAAACGGGTTACTCACTAGGGATAACCAGAAAGAAGCAATTTCGGTTCCAATTGGAATCATTCCTGCTGGTTCTGATAATTCTTTGGTCTGGACCGTGCTTGGAGTTAGAGATCCAGTGTCAGCTGCAATAGCGATTGTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGGCTTACACCTACCGATGTTTTTGCTGTTGAATGGGTTCAAAGTGGTAGAATTCACTTTGGATCGACTGTCACCTACTTTGGCTTTGTGAGCGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGAACTATCTGAGAAATACCAGAAGCGGTTTGGTCCATTGCGCTACTTTGTCACTGGGTTCCTCAAATTCATGTGCTTACCAAAGTACAATTTTGAAGTGGAGTATCTTCCAGCACTGAAAGAAGCTATCTGGAGAAGGAAAAGCTTCGGTCATTGATATGTCTGAACTGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589775" ref_strand="+" ref_description="SGN-U589775 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157331441|emb|CAO64908.1| (e_value=1e-60) unnamed; (*ATH) AT5G23450.2 (e_value=9e-53) | Symbol: None | diacylglycerol kinase family protein, contains INTERPRO domain, IPR001206, DAG-kinase catalytic domain | chr5:7904756-7909560 REVERSE | Aliases: None; (*SWP) sp|Q9LRB0|LCBK1_ARATH (e_value=6e-52) Sphingoid long-chain bases kinase 1 OS=Arabidopsis thaliana GN=LCBK1; ">
      <seq>gtgtctgctgcaatagcaattgtcaggggagggcttacacctaccgatgttattgctgttgaatgggctcaaagtggtagaaatcactttggatcgactgacacctactttggctttgtgagcgatgtgctggaactatccgagaaataccagaagcggtttggtccattacgctattttgtcgctgggttcctcaaattcatgtgcttaccaaagtacaatttcgaagtggagtatcttccatcactgaaagaagcaactggagaaagaaaagcttcattcattgatatgtctgaactgtatacagacattatgagaaggtcaagcacggaagggcttcctagagcctcaagcttatcaagtattgattcaataatgaccccaagcagaatgtctggagcagacttggatactacatgtagtagcactgagccatcagaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="+" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="59493" stop="62073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59800" g_stop="59899" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="127" r_length="100" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59900" i_stop="61455" i_length="1556">
            <donor d_prob="0.966" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61456" g_stop="61773" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="445" r_length="318" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="+" ref_id="SGN-U589775" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59800" e_stop="59899"/>
          <exon e_start="61456" e_stop="61773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGGCTTACACCTACCGATGTTTTTGCTGTTGAATGGGTTCAAAGTGGTAGAATTCACTTTGGATCGACTGTCACCTACTTTGGCTTTGTGAGCGATGGTAATTTGGTTCATCTTTTTTTTCCCTAGCAGTTATTGATGTCTATGCCTTACAGTAACTTTTGTTATTTAATTAATCATGTTGTTTGAACACTTCTGTCATTGTTACCTACACGAATGCAGATGCTTGAGTAGCGTAAGATAAGGACTCAGATACATAAGAGGAAATATTTTGGAAAAGTACGGGACACTTTGCCCCCAGTACGTGATTTATAAAAACTGGTGAACCTTAGAACATGGTAATGCTAGAACAGGTCGCCCCAGAGCGTCGTTCCATCTTCTGACAAAGGTTTTTTTCATTTTATGGCTTATGGTTACTTCTTGTAGAGCAATGAGTTAGTCTTAAAGACTAATGTGAGTTATATTGGAGCATTTCTTCCATGGTCTTGGACTGCCATGCTTCCTGCGTCTTGGATCTTTAGGACCCACCAGATTTAATGATTCTGAATGCCGGGACCATGGAGGCCTAGGGTATGGGAGTACTTTGTGTCGTATTAGGGTATAGGACAAATTACTGGTAATAACTCATGGATAGCCTGTTGATTGTGTTGAAATGGAAGATTTACGTGTAACTTGGAGGAAAATTGGGTCACGTAACATGATAAGCAAGGTGTTATGCTTTACATACCTGATTTACTTACATTTTCAGAAACCTTATGGAGTTCAAGTGTTACGAGTTAGCAACTCTAGAGATAGCATTTGACCCTATTGTACCAGGGTCTGCTTTGTCATATTCTGCTAATTTGTCTCATCAGTATGCTTATTATTTTTTCCAAGGGAAATAACATTGTCGATTTGAACTAGTAGATCTGTTAGGATCTCTGTAAGTAGCTTCCTCCTACTCTTTTTTTTTTGGGCTTCTTTGTGATTGTCTCCAGCATATCCTTAATGCTGAGGAATTCAACGTTACCAATTTCTTTTTAAGAAATAAGTTTGATTATCGAATGCAAAATGCTAGTGGAGGCTATTGTCGTGAAGCTTTTAATGCTTGCGACTCAATATTCATGTTTCTCGGCGCATGATTATTTTTCCTTACATAAGATGCATATGCACTTGGTATATCCAGCATGACATTGCTTATGGATGTTTAGATTAAGTCTGCACCAACTTGATACCTTTATGTAGCAATTTGTGGATGACGTTAAGGATTTAAGATTAAGTAATTTTTAGAATACAGAAGGTTGGTCTGGTGATTGAAAAGGTTGGCGTGTTGGGCTTTGGTCTAGTGGTGAGAGCGCAACGCGTAATGTGTGGGTTAGGTGCATGTCACAGGTTTGAAATGTGTTGCTATCAGAGCTTGGTATTTAAGTGGATAAGGTTAAAGAGACAACCCCTTTATCTCCTTAATTTCAAATTATGAGCCACTGGTCTTTGAGGATTTCTCGATTGTTAAAAAAAGAAAATAAATAAAAGGTTGACGTCTGTGTAAATTCTTTACTTTCCATGGTTGTTGGCTGTATCACTAGTCTTTCACATGGATATCTAGTATTTACCATTTAATATTTTTATCTGAATTGCATATATTTTCCGATAGTTGACTTCAATTGTCTATTGTAGTGCTGGAACTATCTGAGAAATACCAGAAGCGGTTTGGTCCATTGCGCTACTTTGTCGCTGGGTTCCTCAAATTCATGTGCTTACCAAAGTACAATTTTGAAGTGGAGTATCTTCCAGCACTGAAAGAAGCAACTGGAGAAGGAAAAGCTTCAGTCATTGATATGTCTGAACTGTATACAGACATTATGAGAAGGTCAAGCAAGGAAGGGCTTCCCAGAGCCTCAAGCTTATCAAGTATTGATTCAATAATGACCCCAAGCAGAATGTCTGGAGCAGACTTGGATACTACATGTAGTAGCACTGAGCCATCAGAATATG</genome_strand>
        <mrna_strand>GGAGGGCTTACACCTACCGATGTTATTGCTGTTGAATGGGCTCAAAGTGGTAGAAATCACTTTGGATCGACTGACACCTACTTTGGCTTTGTGAGCGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGAACTATCCGAGAAATACCAGAAGCGGTTTGGTCCATTACGCTATTTTGTCGCTGGGTTCCTCAAATTCATGTGCTTACCAAAGTACAATTTCGAAGTGGAGTATCTTCCATCACTGAAAGAAGCAACTGGAGAAAGAAAAGCTTCATTCATTGATATGTCTGAACTGTATACAGACATTATGAGAAGGTCAAGCACGGAAGGGCTTCCTAGAGCCTCAAGCTTATCAAGTATTGATTCAATAATGACCCCAAGCAGAATGTCTGGAGCAGACTTGGATACTACATGTAGTAGCACTGAGCCATCAGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581079" ref_strand="+" ref_description="SGN-U581079 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157331441|emb|CAO64908.1| (e_value=1e-49) unnamed; (*ATH) AT5G23450.2 (e_value=6e-42) | Symbol: None | diacylglycerol kinase family protein, contains INTERPRO domain, IPR001206, DAG-kinase catalytic domain | chr5:7904756-7909560 REVERSE | Aliases: None; (*SWP) sp|Q9LRB0|LCBK1_ARATH (e_value=5e-41) Sphingoid long-chain bases kinase 1 OS=Arabidopsis thaliana GN=LCBK1; ">
      <seq>ggcgattggcggccaatcggccgaattcccatggggatccgatcggctgctgaagaatgggtgtctaccaaaggtcaatttcttggtgtcctggtatgcaatcattcatgcaagacagttcaaagcttaagttcacaggttgtggccccaaaagcagaacctgatgacaacacgttagatctgttgttggtccatggaagtggaagactgaagcttataaggttcttcttgcttctgcaaatgggccgacacctttccctcccgtacgttgagtatgtcaaggttaaggcagtaaaggttaagcctgggaagcactctaacagtagctgtggtattgatggtgaacttttcccggtaaatgagcaagtgatttcgtccttgcttccagaacagtgcaggcttattggtcgcgccccaggtaattgcaagtgattgatggagcccttgtatatcttcaataggtctctcttccttccggctgcaacattcagctctttattcgtcattgaggtccttgtaaattttgtcaatgttgctttcatttttcaaaaattatatgtcagcttatatcttaacatgtatcctctgccgtaacttgtattttttttgccttttgagttggcttgctatgaatattggccatgtcccttgtaatagtttgacaaagtgtgtaaattattgtttttcgatcgttgaggaaagaaatttttatttattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="+" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="61847" stop="63411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62148" g_stop="62384" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="282" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62385" i_stop="62675" i_length="291">
            <donor d_prob="0.692" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62676" g_stop="63111" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="718" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="+" ref_id="SGN-U581079" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62148" e_stop="62384"/>
          <exon e_start="62676" e_stop="63111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTGAAGAATGGGTGTCTACCAAAGGTCAATTTCTTGGTGTCCTGGTATGCAATCATTCATGCAAGACAGTTCAAAGCTTAAGTTCACAGGTTGTGGCCCCAAAAGCAGAACCTGATGACAACACGTTAGATCTGTTGTTGGTCCATGGAAGTGGAAGACTGAAGCTTATAAGGTTCTTCTTGCTTCTGCAAATGGGCCGACACCTTTCCCTCCCGTACGTTGAGTATGTCAAGGTAAAGCAGCAACCGTATTTTAGATGCTTTTACAGATTTTTCCCACCAAGGCAGAGAGTTTTTTTTAGAGCATTAATAAAAGTTTCCTTGTCTTGGATGGAGGCCATCACTGTATGGATATTTTCAAAAAGTCAGTCTACTTTGCAAAGATAAACTGCACCGAGAAACATACAGTATCAGTTTAGAGTTCACCCATTTTCAGAAAAAGAAAATCTGGTTTATAAATTTTAATGTGGTTTTGTTGGTTGGCTTCACTGAAATCAAAGTAAGCTTCTTTTCTATGAAATGCAGGTTAAGGCAGTAAAGGTTAAGCCTGGGAAGCACTCTAACAGTAGCTGTGGTATTGATGGTGAACTTTTCCCGGTAAATGAGCAAGTGATTTCGTCCTTGCTTCCAGAACAGTGCAGGCTTATTGGTCGCGCCCCAGGTAATTGCAAGTGATTGATGGAGCCCTTGTATATCTTCAATAGGTCTCTCTTCCTTCCGGCTGCAACATTCAGCTCTTTATTCGTCATTGAGGTCCTTGTAAATTTTGTCAATGTTGCTTTCATTTTTCAAAAATTATATGTCAGCTTATATCTTAACATGTATCCTCTGCCGTAACTTGTATTTTTTTTGCCTTTTGAGTTGGCTTGCTATGAATATTGGCCATGTCCCTTGTAATAGTTTGACAAAGTGTGTAAATTATTGTTTTTCGATCGTTGAGGAAAGAAATTTTTATTTATTC</genome_strand>
        <mrna_strand>GCTGCTGAAGAATGGGTGTCTACCAAAGGTCAATTTCTTGGTGTCCTGGTATGCAATCATTCATGCAAGACAGTTCAAAGCTTAAGTTCACAGGTTGTGGCCCCAAAAGCAGAACCTGATGACAACACGTTAGATCTGTTGTTGGTCCATGGAAGTGGAAGACTGAAGCTTATAAGGTTCTTCTTGCTTCTGCAAATGGGCCGACACCTTTCCCTCCCGTACGTTGAGTATGTCAAG...................................................................................................................................................................................................................................................................................................GTTAAGGCAGTAAAGGTTAAGCCTGGGAAGCACTCTAACAGTAGCTGTGGTATTGATGGTGAACTTTTCCCGGTAAATGAGCAAGTGATTTCGTCCTTGCTTCCAGAACAGTGCAGGCTTATTGGTCGCGCCCCAGGTAATTGCAAGTGATTGATGGAGCCCTTGTATATCTTCAATAGGTCTCTCTTCCTTCCGGCTGCAACATTCAGCTCTTTATTCGTCATTGAGGTCCTTGTAAATTTTGTCAATGTTGCTTTCATTTTTCAAAAATTATATGTCAGCTTATATCTTAACATGTATCCTCTGCCGTAACTTGTATTTTTTTTGCCTTTTGAGTTGGCTTGCTATGAATATTGGCCATGTCCCTTGTAATAGTTTGACAAAGTGTGTAAATTATTGTTTTTCGATCGTTGAGGAAAGAAATTTTTATTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563302" ref_strand="+" ref_description="SGN-U563302 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157351842|emb|CAO42806.1| (e_value=4e-110) unnamed; (*ATH) AT5G13540.1 (e_value=7e-106) | Symbol: None | expressed protein, HERC2 - Homo sapiens, EMBL:AF071172; isoform contains non-consensus GG acceptor splice site at intron 6 | chr5:4351396-4354426 FORWARD | Aliases: T6I14.70, T6I14_70; ">
      <seq>ccgttaagtaggtgactgggtaagagtaaaagcttcagttccctcacccaaatatggttgggaggacatcacaaggaatagtgtaggaataatccacagtttggaagaagatggtgatgttggcattgcattttgcttccgtagcaagcctttctcttgttcagtgacagatgtggagaaggtgccgcctttcgaagttggacaggaaattcatgttctgccatctgtttctcaacctagacttggatggtccaatgagacaccaccaacggttgggaagattgccagaatcgacatggatggtgctttaaatgttagggttgctgggagagacagattatggaagggttctgctggagatgcacaaagactttcaggatttgatgtaggtgattgggtacgttcaaaaccaagcctgggaactagacccagttatgattggtacagcataggcaaagaaagtttagcagttgtacatagtgttcaagacactggttatttagagcttgcatgctgtttccgcataggtcgcctaatgactcattacactgacattgaaaaggtttctggatttcgaattgggcagcatgttaggtttaggtctggtctggtagaaccaagatggggctggagaggcactaatccagattctcgaagtgtgataacttgggttaatgctgatggaaaagttagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="+" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="79128" stop="80565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79430" g_stop="79735" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="313" r_length="306" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79736" i_stop="79884" i_length="149">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79885" g_stop="80265" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="694" r_length="381" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="+" ref_id="SGN-U563302" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79430" e_stop="79735"/>
          <exon e_start="79885" e_stop="80265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGGTGACTGGGTAAGAGTAAAAGCTTCAGTTCCCTCACCCAAATATGGTTGGGAGGACATCACAAGGAATAGTGTAGGAATAATCCACAGTTTGGAAGAAGATGGTGATGTTGGCATTGCATTTTGCTTCCGTAGCAAGCCTTTCTCTTGTTCAGTGACAGATGTGGAGAAGGTGCCGCCTTTCGAAGTTGGACAGGAAATTCATGTTCTGCCATCTGTTTCTCAGCCTAGACTTGGATGGTCCAATGAGACACCAGCAACGGTTGGGAAGATTGCCAGAATCGACATGGATGGTGCTTTAAATGTAAGCTTGCACTGCCTGTCTCATTGTAAATTTGTTGGAGAGCATCTATTGACCTTATTATTTAGAATAAAATCTAGTGAACTTTGAACCGACTTCCAATTCAATTAGTTTATGATTTTAATGAATTGCTGACCTTTGATGCTTTCTAGGTTAGGGTTGCTGGGAGAGACAGTTTATGGAAGGTTTCTGCTGGAGATGCAGAAAGACTTTCAGGATTTGATGTAGGTGATTGGGTACGTTCAAAACCAAGCCTGGGAACTAGACCCAGTTATGATTGGTACAGCATAGGCAAAGAAAGTTTAGCAGTTGTACATAGTGTTCAAGACACTGGTTATTTAGAGCTTGCATGCTGTTTCCGCAAAGGTCGCCTAATGACTCATTACACTGACATTGAAAAGGTTTCTGGATTTCGAATTGGGCAGCATGTTAGGTTTAGGTCTGGTCTGGTAGAACCAAGATGGGGCTGGAGAGGCACTAATCCAGATTCTCGAGGTGTGATAACTGGCGTTAATGCTGATGGAGAAGTTAGG</genome_strand>
        <mrna_strand>GTAGGTGACTGGGTAAGAGTAAAAGCTTCAGTTCCCTCACCCAAATATGGTTGGGAGGACATCACAAGGAATAGTGTAGGAATAATCCACAGTTTGGAAGAAGATGGTGATGTTGGCATTGCATTTTGCTTCCGTAGCAAGCCTTTCTCTTGTTCAGTGACAGATGTGGAGAAGGTGCCGCCTTTCGAAGTTGGACAGGAAATTCATGTTCTGCCATCTGTTTCTCAACCTAGACTTGGATGGTCCAATGAGACACCACCAACGGTTGGGAAGATTGCCAGAATCGACATGGATGGTGCTTTAAAT.....................................................................................................................................................GTTAGGGTTGCTGGGAGAGACAGATTATGGAAGGGTTCTGCTGGAGATGCACAAAGACTTTCAGGATTTGATGTAGGTGATTGGGTACGTTCAAAACCAAGCCTGGGAACTAGACCCAGTTATGATTGGTACAGCATAGGCAAAGAAAGTTTAGCAGTTGTACATAGTGTTCAAGACACTGGTTATTTAGAGCTTGCATGCTGTTTCCGCATAGGTCGCCTAATGACTCATTACACTGACATTGAAAAGGTTTCTGGATTTCGAATTGGGCAGCATGTTAGGTTTAGGTCTGGTCTGGTAGAACCAAGATGGGGCTGGAGAGGCACTAATCCAGATTCTCGAAGTGTGATAACTTGGGTTAATGCTGATGGAAAAGTTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584662" ref_strand="+" ref_description="SGN-U584662 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|8489792|gb|AAF75752.1|AF261142_1 (e_value=1e-83) putative; (*ATH) AT3G06730.1 (e_value=2e-54) | Symbol: None | thioredoxin family protein, contains Pfam profile: PF00085 Thioredoxin | chr3:2124240-2126148 FORWARD | Aliases: F3E22.13; (*SWP) sp|O51088|THIO_BORBU (e_value=3e-12) Thioredoxin OS=Borrelia burgdorferi GN=trxA; ">
      <seq>gtctcgttgggaattttggctctctctttctttgctccttaaaccccaaacagagtctctctccctgtgctgtgtgtcactccggcagagcagataaagctataagaatgcaagctgccagtctcgcctttcaccctccggcactccgtacttcaccttcttacctctcctccaaacttccccaccacctcaattattcactcttcaaacacgctccttcaacttccacactatctttaacccaagtactctccagaaataccatttgcaaacccccagctgttggaaaatatgtcagggaggattatcttgtgaagaaattatctgccaaggagattcaagaactgataaagggagaaaggaatgtgccactgattattgatttctatgccacatggtgtggtccttgtattttgatggcgcaagaacttgaaatgcttgctgtggagtatgaaaacaatgcacttattgtgaaagtggacacagatgatgaatacgaatttgcacgagatatgcaggttcgaggactacctacgttgtatttcataagtccagattcaagtaaggatgctatcagaactgaagggctcatcccgatacaaatgatgcgggacatcattgataatgatttatgatgaataattcagttggttctttgttagtggaatccattgctctttgctgtagttgtgaagctgccttttattagttcgtagtgatgtaccaatatgtggatctcaacataattttttagcaatttccttctgaagctctcaggcttggtatctgccaggcagtggtaagagttgtaacacaaattttgcacttggaaacagttaaaacaagtagtgcaacaaactgcaatttctgatgttaaaacagaaatggatgtttaaaatcttagaattcctccagattgaaatagagtgccaagtattctaaatgttcttaaggtggacgcttgagttttttaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="-" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="85555" stop="81462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85255" g_stop="84942" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84941" i_stop="84434" i_length="508">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84433" g_stop="84311" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="437" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84310" i_stop="82534" i_length="1777">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82533" g_stop="82453" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="518" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82452" i_stop="82220" i_length="233">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.780" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82219" g_stop="81762" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="976" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="-" ref_id="SGN-U584662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>976</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85255" e_stop="84942"/>
          <exon e_start="84433" e_stop="84311"/>
          <exon e_start="82533" e_stop="82453"/>
          <exon e_start="82219" e_stop="81762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCGTTGGGAATTTTGGCTCTCTCTTTCTTTGCTCCTTAAACCCCAAACAGAGTCTCTCTCCCTGTGCTGTGTGTCACTCCGGCAGAGCAGATAAAGCTATAAGAATGCAAGCTGCCAGTCTCGCCTTTCACCCTCCGGCACTCCGTACTTCACCTTCTTACCTCTCCTCCAAACTTCCCCACCACCTCAATTATTCACTCTTCAAACACGCTCCTTCAACTTCCACACTATCTTTAACCCAAGTACTCTCCAGAAATACCATTTGCAAACCCCCAGCTGTTGGAAAATATGTCAGGGAGGATTATCTTGTGGTATGTTACGATTCTTTGTTGTTGGTTGTTCAGTTTCAGTTAGTTTCTCAATGTTAGTTCAATTTTTCTGAATCTCGGCTATTGGGTTTTGTTTAAAAAGTTCAAATCAATTTGTTAAGTTGGAAATATGTGTTGGTGAAATTACAATTACAATTGAAAAACAAAATGAGGTACCAATATCTTGCTCGCTCTGTTTAAGGAGACAACAAAACTTTTCACCGGTGTAGTAGTAATCTTCTTGACGAATTTGGCTGTTGGGTTTGTTTATCTGCTGGAACCTTCAGTAAAATTTATATCAATTTGGAAATTTATGTTGTGGATAAGCTTTGTTTGTTGCTGAAACTGGAACACTGGTTAAACAAGAGCGAAAAGGAACCAGACTTAGGCGACTGTTTTAGAGGAATTCATCTGTTATTTGTTTTTGCAAGTGTGGTTTTGTTTCTAATGAGCGCGCTACGCAAGGTTTTGCTAATTCCAATTCATTTTCCCTAATTATATGTGATTGCAGAAGAAATTATCTGCCAAGGAGATTCAAGAACTGATAAAGGGAGAAAGGAATGTGCCACTGATTATTGATTTCTATGCCACATGGTGTGGTCCTTGTATTTTGATGGCGCAAGAACTTGAAATGGTAAGTTTGGATTTTACACAAAAATGTCTTAAACACTTCTTTGATCTGCTATTGATGGTTTAATGTAGAGTTGGGATTGATGGATAAATGCTCTAGACGATTCGTTACTGTGGTTCAAATCAAGTGGCTATTTGAATTGGTCAATTTTCCAGTTTGCAGAACCATTTGGTTTTGTAATGACTCCATTTTCTAGCTCCAATTCTTTTCTTAATTAGTTGGGGTTAGCTATAAATTAGAGTATCCTATCATAGTTTGATTATTTTTTAGCAGTCCGCCAACAGCCAACCTATGCAACTTCTTGTCGATTTGGCTTTAGGACATGCTATGTTTGTGAATCTTACATATTGGGGGTGAGGGTATCATTTTGCTCCAGCAATGATCAGGAATTGTTTTAAATGCTTAAAATCACTATTGCTACATATGAGGAGAAAACCTAGAGAAGGGTAGAGGGATGGGACAATTATCCCTGAATTTCTAATGTTGCGGAAAAATATTGTAGTTAGGAGTCGAAATTTTCTATCAACGTGAATGATATAATGTGTTAGACCTGATATTTATATAAATAAAGCACGATTCGTCAATCATTGGTGGGATAATCCTTTTAAACTCTAGGGAAACCTTATGCTCATTGATATGGTGTATTTGAAGATATAGCAACTCTGAGGGCCTACATTCAATTGTTGAAAAGATAGGGATAAATCTCAGGTGATCATGATACTCACATGGCTATTTTATCCTCAATTTTCTGTATCTCACTTCCTTGGAGAAAAACCTTGTGTTGACCTTTTTTTCCCCGTGTTTATTGTTCCTGTGAGAAATAAATATACGTAGACAGAGTGGATATGGAGAGTTTCGTGATTTTCAATTTTCCTAGTTGCTTATTCAACAATGTCACATTAATGGTGGCACAGATCGTCCATTATTCAGTGTCAGTATTGGAGTGGTTAATATGCTGAGAGTTTGTCTTAAATGGATGAGGTGCTGCTATGTGGTGAAGGAATACTATTAGCTGAGGAGCATCTATTTTTTCGCAAAAACTTTAGTAAAAGTTTGTAACTGATAAGTTTTAATGAGAAGCTATGAATAATGAAGTTAAAGTCTGCTGTCTAGTAACTTTTACCTATTATTTTATTTGGAGGAAAGATTGACATTGATCTTTCTATAGTTTAAATGCGTAATGTCCTAGTGGAATTTGTCTATCATAAACTGCATGTCACGAATCGACAATCGAAATCAAAGAATTGTATTACTTCTAGGCCTTCATAAGTTTATATTTTTTGGATAGGCATAAGGAGTAAGTTCCCCTCTCTTAGTGTGATTGCAAGATTGGAGATCCTACCGTCTAATTCAAGTATAGCTGACATTGATGATAAGAAAAGGAGATTGTTTTGTAATATTAAAATGATGCAAAAAGTATCAAAATATCTTTTTCGTTTCAAGTATACTTTTGTCTTTTGGTGTAAACAGAGTCTCACCTTATGCATGTATATTTGGGCTCGTAAGTTAGATGATTGTAAAAAAGAGACACAACCAACTATAAATAAGTTGGATGATTGTAAAAACGAGACACAACCAACTATATATACTTTTTAGCACAACCTTGGTGTATTGATTATGAAATATATTCCGCTTACCCCTGTCCACACGTAAAAATCCTCCTCAAAATCAGTAAGTATAAGTTTCGTTTGAAATAGTTTGCTTGGAGTTTAGTTATGTCTTGCTATGCACACTAGGTTATCTTTGCTAATGTCAAAATTGTTCCAATTTCATCTGACAGCTTGCTGTGGAGTATGAAAACAATGCACTTATTGTGAAAGTGGACACAGATGATGAATACGAATTTGCACGAGATATGCAGGTACAACCTCTTACACCATCATTCTGCCTTGAATTAAAATTTGTTTCTCTTTCAATACTATCAATGTTTTTGAAGAGAGTTCTGTTTTCTCTCTTGTCATTTGTGAGTCGTGAGTATATACTTATCAATTATCAGAATCCCTTGCTTTCATCACATATTTCATAAGTGCAAAGCTATTTGTCTTTCAAGAATTTGCAAAGGTAACTGTTACAACTGAAATAATCTCCTCGCAGGTTCGAGGACTACCTACGTTGTATTTCATAAGTCCAGATTCAAGTAAGGATGCTATCAGAACTGAAGGGCTCATCCCGATACAAATGATGCGGGACATCATTGATAATGATTTATGATGAATAATTCAGTTGGTTCTTTGTTAGTGGAATCCATTGCTCTTTGCTGTAGTTGTGAAGCTGCCTTTTATTAGTTCGTAGTGATGTACCAATATGTGGATCTCAACATAATTTTTTAGCAATTTCCTTCTGAAGCTCTCAGGCTTGGTATCTGCCAGGCAGTGGTAAGAGTTGTAACACAAATTTTGCACTTGGAAACAGTTAAAACAAGTAGTGCAACAAACTGCAATTTCTGATGTTAAAACAGAAATGGATGTTTAAAATCTTAGAATTCCTCCAGATTGAAATAGAGTGCCAAGTATTCTAAATGTTCTTAAGGTGGACGCTTGAGTTTTTTAATC</genome_strand>
        <mrna_strand>GTCTCGTTGGGAATTTTGGCTCTCTCTTTCTTTGCTCCTTAAACCCCAAACAGAGTCTCTCTCCCTGTGCTGTGTGTCACTCCGGCAGAGCAGATAAAGCTATAAGAATGCAAGCTGCCAGTCTCGCCTTTCACCCTCCGGCACTCCGTACTTCACCTTCTTACCTCTCCTCCAAACTTCCCCACCACCTCAATTATTCACTCTTCAAACACGCTCCTTCAACTTCCACACTATCTTTAACCCAAGTACTCTCCAGAAATACCATTTGCAAACCCCCAGCTGTTGGAAAATATGTCAGGGAGGATTATCTTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAATTATCTGCCAAGGAGATTCAAGAACTGATAAAGGGAGAAAGGAATGTGCCACTGATTATTGATTTCTATGCCACATGGTGTGGTCCTTGTATTTTGATGGCGCAAGAACTTGAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTGTGGAGTATGAAAACAATGCACTTATTGTGAAAGTGGACACAGATGATGAATACGAATTTGCACGAGATATGCAG.........................................................................................................................................................................................................................................GTTCGAGGACTACCTACGTTGTATTTCATAAGTCCAGATTCAAGTAAGGATGCTATCAGAACTGAAGGGCTCATCCCGATACAAATGATGCGGGACATCATTGATAATGATTTATGATGAATAATTCAGTTGGTTCTTTGTTAGTGGAATCCATTGCTCTTTGCTGTAGTTGTGAAGCTGCCTTTTATTAGTTCGTAGTGATGTACCAATATGTGGATCTCAACATAATTTTTTAGCAATTTCCTTCTGAAGCTCTCAGGCTTGGTATCTGCCAGGCAGTGGTAAGAGTTGTAACACAAATTTTGCACTTGGAAACAGTTAAAACAAGTAGTGCAACAAACTGCAATTTCTGATGTTAAAACAGAAATGGATGTTTAAAATCTTAGAATTCCTCCAGATTGAAATAGAGTGCCAAGTATTCTAAATGTTCTTAAGGTGGACGCTTGAGTTTTTTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564532" ref_strand="+" ref_description="SGN-U564532 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|147864051|emb|CAN81128.1| (e_value=2e-28) hypothetical; (*ATH) AT3G54390.1 (e_value=1e-24) | Symbol: None | expressed protein, similar to 6b-interacting protein 1 (NtSIP1) (Nicotiana tabacum) GI:18149189 | chr3:20148719-20150120 REVERSE | Aliases: T14E10.5; ">
      <seq>gattgataaagggagaagtgatacagtaaagtccttgaacatacaatcagcaagaaaatggaaatagaagttaattattagtaatctaaataaaatgttctccataattaggtagtggctgggtcaagaaggatatcatcatcaaattaaaagatgataacaaggtaatttctatttccacagctagctagagtattattattattttctagctcatgatgaacttcttccaattctcaatgaagagtcaactgatcctttggtaatactagcaaagagcttagcaatctcaagctgagtgttggcaatgatctccgttctcttgagacccatttctcctcttttggcctcagcttctgctctcattctctcgatgtctctcatcgactccattcgggcttgctctgaccttaccactacttcagctagcaaacgtatgctctctccgatctcccacccttccacggccctctttcgcttattctttgatctcaatttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="+" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="85227" stop="86326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85527" g_stop="86026" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="+" ref_id="SGN-U564532" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85527" e_stop="86026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGATAAAGGGAGAAGTGATACAGTAAAGTCCTTGAACATACAATCAGCAAGAAAATGGAAATAGAAGTTAATTATTAGTAATCTAAATAAAATGTTCTCCATAATTAGGTAGTGGCTGGGTCAAGAAGGATATCATCATCAAATTAAAAGATGATAACAAGGTAATTTCTATTTCCACAGCTAGCTAGAGTATTATTATTATTTTCTAGCTCATGATGAACTTCTTCCAATTCTCAATGAAGAGTCAACTGATCCTTTGGTAATACTAGCAAAGAGCTTAGCAATCTCAAGCTGAGTGTTGGCAATGATCTCCGTTCTCTTGAGATCCATTTCTCCTCTTTTGGCCTCAGCTTCTGCTCTCATTCTCTCGATGTCTCTCATCGTCTCCATTCGTGCTTGCTCTGACCTTACCACTACTTCAGCTAGCAAACGTATGCTCTCTCCGATCTCCCACCCTTCCACGGCCCTCTTTCGCTTATTCTTTGATCTCAATTTCG</genome_strand>
        <mrna_strand>GATTGATAAAGGGAGAAGTGATACAGTAAAGTCCTTGAACATACAATCAGCAAGAAAATGGAAATAGAAGTTAATTATTAGTAATCTAAATAAAATGTTCTCCATAATTAGGTAGTGGCTGGGTCAAGAAGGATATCATCATCAAATTAAAAGATGATAACAAGGTAATTTCTATTTCCACAGCTAGCTAGAGTATTATTATTATTTTCTAGCTCATGATGAACTTCTTCCAATTCTCAATGAAGAGTCAACTGATCCTTTGGTAATACTAGCAAAGAGCTTAGCAATCTCAAGCTGAGTGTTGGCAATGATCTCCGTTCTCTTGAGACCCATTTCTCCTCTTTTGGCCTCAGCTTCTGCTCTCATTCTCTCGATGTCTCTCATCGACTCCATTCGGGCTTGCTCTGACCTTACCACTACTTCAGCTAGCAAACGTATGCTCTCTCCGATCTCCCACCCTTCCACGGCCCTCTTTCGCTTATTCTTTGATCTCAATTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585676" ref_strand="+" ref_description="SGN-U585676 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|15232501|ref|NP_191007.1| (e_value=5e-40) expressed protein [Arabidopsis thaliana]; (*ATH) AT3G54390.1 (e_value=3e-42) | Symbol: None | expressed protein, similar to 6b-interacting protein 1 (NtSIP1) (Nicotiana tabacum) GI:18149189 | chr3:20148719-20150120 REVERSE | Aliases: T14E10.5; ">
      <seq>atctcttctccctcactatgtctttttcttacaggtctcaaatattgctagcggctaagtaaaactcagtggaaatgaaagacgattattagctagttaatactaatggataaagaagctgcaaatcatcatcaaaatcatgaaatttctaacaaagatgaattctcaccgaggattaagccgctgcaaaattaccatgttcccactggaaacagtgatcgactgaagagggatgaatggagtgaaggagcagtttcgtgtcttctcgaagcttatgaagctaaatggatactccgtaacagagcgaagctcaagggacaggattgggaggatgtggccaagcacgtgtcggcgcgtgtttattcaactaaatcccccaaaactcagacgcagtgtaagaacaaaatcgaatctatgaagaagaggtaccgatcggaatccgcaaccgccgccgatgcttcttcctggccgctctatcctcgccttgacctattgttacgtggaaataatgcatccgcggcttcctcttcgctaattccgccgccgccgcttccgcctaatactaattgtgtgattgatgccgtcgaaccaccaccacagcagccaatattactacctccacctccggctactcttcctcctcctcctccgctcccgccgtcgccggctttgccttttgggaatggtgatcagaattcgcatgggtctaatggtcttgacagaggaataaaggaagacatattaatggacgccaaattatcggacaacgcagcagcaccagatcagaaaaacgcaacagctacaaatagcagcagcacgccagcactgtacagcgacaacaagagcaagtcgaaattgagatcaaagaataancgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="-" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="87959" stop="85700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87659" g_stop="86928" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86927" i_stop="86145" i_length="783">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86144" g_stop="86000" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="877" r_length="145" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="-" ref_id="SGN-U585676" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87659" e_stop="86928"/>
          <exon e_start="86144" e_stop="86000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTTCTCCCTCACTATGTCTTTTTCTTACAGGTCTCAAATATTGCTAGCGGCTAAGTAAAACTCAGTGGAAATGAAAGACGATTATTAGCTAGTTAATACTAATGGATAAAGAAGCTGCAAATCATCATCAAAATCATGAAATTTCTAACAAAGATGAATTCTCACCGAGGATTAAGCCGCTGCAAAATTACCATGTTCCCACTGGAAACAGTGATCGACTGAAGAGGGATGAATGGAGTGAAGGAGCAGTTTCGTGTCTTCTCGAAGCTTATGAAGCTAAATGGATACTCCGTAACAGAGCGAAGCTCAAGGGACAGGATTGGGAGGATGTGGCCAAGCACGTGTCGGCGCGTGTTTATTCAACTAAATCCCCCAAAACTCAGACGCAGTGTAAGAACAAAATCGAATCTATGAAGAAGAGGTACCGATCGGAATCCGCAACCGCCGCCGATGCTTCTTCCTGGCCGCTCTATCCTCGCCTTGACCTATTGTTACGTGGAAATAATGCATCCGCGGCTTCCTCTTCGCTAATTCCGCCGCCGCCGCTTCCGCCTAATACTAATTGTGTGATTGATGCCGTCGAACCACCACCACAGCAGCCAATATTACTACCTCCACCTCCGGCTACTCTTCCTCCTCCTCCTCCGCTCCCGCCGTCGCCGGCTTTGCCTTTTGGGAATGGTGATCAGAATTCGCATGGGTCTAATGGTCTTGACAGAGGAATAAAGGTTAGTCGAGTATATATTTGCTTGCTTCAATTTTTATAATAATTTTGAAGTCCAAATAATTATGATCTCTCCTTTTTGTTCTGATTTCCATTTACCCATTTTATATATGAATTTTAATAGACAATTCAATATGTAGTTGAGTTAATTTTTTTTTTATATTAAAATATAATCGGTTAGTAGTTGAAATGATTGTATAAGATTAAGCTTATGATTTAAATGATATTTTTGCATAATAGGTAAGAGAGCTCACTCATAAGGGATTGGACTATGAAATATTCACAGTAGTCTAATTTGATATATGCCACATGAGATAAATAAAATAAATGACAAATATAAGTTATTATTTTTCTACAATTAAACGTTAATAGTGAAAAAAAAACACTCTACATAATAATAATAATATGTTAAGTTTCTAATTAGAACTCTCATATTGGAGTCATGGTCATTAAGTTAACTTTTATAGTGGGTGTTAAAACTTACCTGATATAACCTGAAATAGTATGAACCCTCAAAGGTTTTACTGAATTAGCAAGTGAAAAAACAAAATATAACGAAACTAACAAAACACATAGGTCGTGGTGTAGTGATGAAACTGTTTTACTCATAATCAAAGATTTCATCTTCCTGTTGGAAAATTCTGTTTAAAGCGGTAATCCCTGAATTGTGCTACAATGCGAGCTTCGGATGAAAAAAAAAAAACAAAACTTGCAGCATTGTAGACTGTACACTATCTTCTACTATAATAATGAGCATGAAAGTGAAGTTGCCGACTTGTGTGACCAGGAAGACATATTAATGGACGCCAAATTATCGGACAACGCAGCAGCACCAGATCAGAAAAACGCAACAGCTACAAATAGCAGCAGCACGCCAGCACTGTACAGCGACAACAAGAGCAAGTCGAAATTGAGATCAAAGAATAAGCGAA</genome_strand>
        <mrna_strand>ATCTCTTCTCCCTCACTATGTCTTTTTCTTACAGGTCTCAAATATTGCTAGCGGCTAAGTAAAACTCAGTGGAAATGAAAGACGATTATTAGCTAGTTAATACTAATGGATAAAGAAGCTGCAAATCATCATCAAAATCATGAAATTTCTAACAAAGATGAATTCTCACCGAGGATTAAGCCGCTGCAAAATTACCATGTTCCCACTGGAAACAGTGATCGACTGAAGAGGGATGAATGGAGTGAAGGAGCAGTTTCGTGTCTTCTCGAAGCTTATGAAGCTAAATGGATACTCCGTAACAGAGCGAAGCTCAAGGGACAGGATTGGGAGGATGTGGCCAAGCACGTGTCGGCGCGTGTTTATTCAACTAAATCCCCCAAAACTCAGACGCAGTGTAAGAACAAAATCGAATCTATGAAGAAGAGGTACCGATCGGAATCCGCAACCGCCGCCGATGCTTCTTCCTGGCCGCTCTATCCTCGCCTTGACCTATTGTTACGTGGAAATAATGCATCCGCGGCTTCCTCTTCGCTAATTCCGCCGCCGCCGCTTCCGCCTAATACTAATTGTGTGATTGATGCCGTCGAACCACCACCACAGCAGCCAATATTACTACCTCCACCTCCGGCTACTCTTCCTCCTCCTCCTCCGCTCCCGCCGTCGCCGGCTTTGCCTTTTGGGAATGGTGATCAGAATTCGCATGGGTCTAATGGTCTTGACAGAGGAATAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACATATTAATGGACGCCAAATTATCGGACAACGCAGCAGCACCAGATCAGAAAAACGCAACAGCTACAAATAGCAGCAGCACGCCAGCACTGTACAGCGACAACAAGAGCAAGTCGAAATTGAGATCAAAGAATAANCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585675" ref_strand="+" ref_description="SGN-U585675 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|15232501|ref|NP_191007.1| (e_value=3e-34) expressed protein [Arabidopsis thaliana]; (*ATH) AT3G54390.1 (e_value=3e-36) | Symbol: None | expressed protein, similar to 6b-interacting protein 1 (NtSIP1) (Nicotiana tabacum) GI:18149189 | chr3:20148719-20150120 REVERSE | Aliases: T14E10.5; ">
      <seq>gctaatctcttctccctcactatgtctttttcttacaggtctcaaatattgctagcggctaagtaaaactcagtggaaatgaaagacgattattagctagttaatactaatggataaagaagctgcaaatcatcatcaaaatcatgaaatttctaacaaagatgaattctcaccgaggattaagccgctgcaaaattaccatgttcccactggaaacagtgatcgactgaagagggatgaatggagtgaaggagcagtttcgtgtcttctcgaagcttatgaagctaaatggatactccgtaacagagcgaagctcaagggacaggattgggaggatgtggccaagcacgtgtcggcgcgtgtttattcaactaaatcccccaaaactcagacgcagtgtaagaacaaaatcgaatctatgaagaagaggtaccgatcggaatccgcaaccgccgctctatcctcgccttgacctattgttacgtggaaataatgcatccgcggcttcctcttcgctaattccgccgccgccgcttccgcctaatactaattgtgtgattgatgccgtcgaaccaccaccacagcagccaatattactacctccacctccggctactcttcctcctcctcctccgctcccgccgtcgccggctttgccttttgggaatggtgatcagaattcgcatgggtctaatggtcttgacagaggaataaaggaagacatattaatggacgccaaattatcggacaacgcagcagcaccagatcagaaaaacgcaacagctacaaatagcagcagcacgccggcactgtacagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="-" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="87962" stop="85741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87663" g_stop="86928" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86927" i_stop="86145" i_length="783">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86144" g_stop="86041" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="820" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="-" ref_id="SGN-U585675" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.024" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87663" e_stop="86928"/>
          <exon e_start="86144" e_stop="86041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAATCTCTTCTCCCTCACTATGTCTTTTTCTTACAGGTCTCAAATATTGCTAGCGGCTAAGTAAAACTCAGTGGAAATGAAAGACGATTATTAGCTAGTTAATACTAATGGATAAAGAAGCTGCAAATCATCATCAAAATCATGAAATTTCTAACAAAGATGAATTCTCACCGAGGATTAAGCCGCTGCAAAATTACCATGTTCCCACTGGAAACAGTGATCGACTGAAGAGGGATGAATGGAGTGAAGGAGCAGTTTCGTGTCTTCTCGAAGCTTATGAAGCTAAATGGATACTCCGTAACAGAGCGAAGCTCAAGGGACAGGATTGGGAGGATGTGGCCAAGCACGTGTCGGCGCGTGTTTATTCAACTAAATCCCCCAAAACTCAGACGCAGTGTAAGAACAAAATCGAATCTATGAAGAAGAGGTACCGATCGGAATCCGCAACCGCCGCCGATGCTTCTTCCTGGCCGCTCTATCCTCGCCTTGACCTATTGTTACGTGGAAATAATGCATCCGCGGCTTCCTCTTCGCTAATTCCGCCGCCGCCGCTTCCGCCTAATACTAATTGTGTGATTGATGCCGTCGAACCACCACCACAGCAGCCAATATTACTACCTCCACCTCCGGCTACTCTTCCTCCTCCTCCTCCGCTCCCGCCGTCGCCGGCTTTGCCTTTTGGGAATGGTGATCAGAATTCGCATGGGTCTAATGGTCTTGACAGAGGAATAAAGGTTAGTCGAGTATATATTTGCTTGCTTCAATTTTTATAATAATTTTGAAGTCCAAATAATTATGATCTCTCCTTTTTGTTCTGATTTCCATTTACCCATTTTATATATGAATTTTAATAGACAATTCAATATGTAGTTGAGTTAATTTTTTTTTTATATTAAAATATAATCGGTTAGTAGTTGAAATGATTGTATAAGATTAAGCTTATGATTTAAATGATATTTTTGCATAATAGGTAAGAGAGCTCACTCATAAGGGATTGGACTATGAAATATTCACAGTAGTCTAATTTGATATATGCCACATGAGATAAATAAAATAAATGACAAATATAAGTTATTATTTTTCTACAATTAAACGTTAATAGTGAAAAAAAAACACTCTACATAATAATAATAATATGTTAAGTTTCTAATTAGAACTCTCATATTGGAGTCATGGTCATTAAGTTAACTTTTATAGTGGGTGTTAAAACTTACCTGATATAACCTGAAATAGTATGAACCCTCAAAGGTTTTACTGAATTAGCAAGTGAAAAAACAAAATATAACGAAACTAACAAAACACATAGGTCGTGGTGTAGTGATGAAACTGTTTTACTCATAATCAAAGATTTCATCTTCCTGTTGGAAAATTCTGTTTAAAGCGGTAATCCCTGAATTGTGCTACAATGCGAGCTTCGGATGAAAAAAAAAAAACAAAACTTGCAGCATTGTAGACTGTACACTATCTTCTACTATAATAATGAGCATGAAAGTGAAGTTGCCGACTTGTGTGACCAGGAAGACATATTAATGGACGCCAAATTATCGGACAACGCAGCAGCACCAGATCAGAAAAACGCAACAGCTACAAATAGCAGCAGCACGCCAGCACTGTACAGCGA</genome_strand>
        <mrna_strand>GCTAATCTCTTCTCCCTCACTATGTCTTTTTCTTACAGGTCTCAAATATTGCTAGCGGCTAAGTAAAACTCAGTGGAAATGAAAGACGATTATTAGCTAGTTAATACTAATGGATAAAGAAGCTGCAAATCATCATCAAAATCATGAAATTTCTAACAAAGATGAATTCTCACCGAGGATTAAGCCGCTGCAAAATTACCATGTTCCCACTGGAAACAGTGATCGACTGAAGAGGGATGAATGGAGTGAAGGAGCAGTTTCGTGTCTTCTCGAAGCTTATGAAGCTAAATGGATACTCCGTAACAGAGCGAAGCTCAAGGGACAGGATTGGGAGGATGTGGCCAAGCACGTGTCGGCGCGTGTTTATTCAACTAAATCCCCCAAAACTCAGACGCAGTGTAAGAACAAAATCGAATCTATGAAGAAGAGGTACCGATCGGAATCCGC-A---------A--------CC--GCCGCTCTATCCTCGCCTTGACCTATTGTTACGTGGAAATAATGCATCCGCGGCTTCCTCTTCGCTAATTCCGCCGCCGCCGCTTCCGCCTAATACTAATTGTGTGATTGATGCCGTCGAACCACCACCACAGCAGCCAATATTACTACCTCCACCTCCGGCTACTCTTCCTCCTCCTCCTCCGCTCCCGCCGTCGCCGGCTTTGCCTTTTGGGAATGGTGATCAGAATTCGCATGGGTCTAATGGTCTTGACAGAGGAATAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACATATTAATGGACGCCAAATTATCGGACAACGCAGCAGCACCAGATCAGAAAAACGCAACAGCTACAAATAGCAGCAGCACGCCGGCACTGTACAGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576324" ref_strand="+" ref_description="SGN-U576324 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|147864050|emb|CAN81127.1| (e_value=3e-60) hypothetical; (*ATH) AT1G08315.1 (e_value=8e-57) | Symbol: None | armadillo/beta-catenin repeat family protein, contains Pfam profile: PF00514 armadillo/beta-catenin-like repeat | chr1:2620334-2621542 REVERSE | Aliases: None; (*SWP) sp|O22193|PUB4_ARATH (e_value=1e-21) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4; ">
      <seq>gcggcacaccaaactctgtaacacaaaagtcaacaatggagtatttatattgttgatgtctatgtatatccaaattatataaaagcaatttcggattagttcaacgaatagtaatgctgaatttgctctagaaaaaaatatcatcggaaatggaggtcaaacgaagggcggtgaagaatctcgttacgaagctgagttccgtatcggagcagacacgaacagaagcaatttgtgagctgagattgatttcgaagaacgattccgatagcagaccgttgatcgccgacgccggtgcggttccgtatttgtcggaatcgctgtactcgtcgaataaattgtctcaggagaacgcaactgcggcgttgcataatctatcaatttctcataaagacttgttgatgtcgacgcgagggctccttgatgctctctctcacgctctccggaatccgtcttctccttccgtcgctcagtgcgctgctggtaccattttcagcttactcactgtcgagtcgtatcggtctattattgggcacaagcgtgatatcctttttggtcttatagacataataaaaaaccctaattcggattctagaactgtaaaagatgctctcaaagctctttttggtattgcgctttacccgatgaatcgtgctcatattattgagcttggagctgtacctccgctgttttcattgctgtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="-" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="97164" stop="95864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96865" g_stop="96164" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="-" ref_id="SGN-U576324" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U576324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96865" e_stop="96164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGCACACCAAACTCTGTAACACAAAAGTCAACAATGGAGTATTTATATTGTTGATGTCTATGTATATCCAAATTATATAAAAGCAATTTCGGATTAGTTCAACGAATAGTAATGCTGAATTTGCTCTAGAAAAAAATATCATCGGAAATGGAGGTCAAACGAAGGGCGGTGAAGAATCTCGTTACGAAGCTGAGTTCCGTATCGGAGCAGACACGAACAGAAGCAATTTGTGAGCTGAGATTGATTTCGAAGAACGATTCCGATAGCAGACCGTTGATCGCCGACGCCGGTGCGGTTCCGTATTTGTCGGAATCGCTGTACTCGTCGAATAAATTGTCTCAGGAGAACGCAACTGCGGCGTTGCATAATCTATCAATTTCTCATAAAGACTTGTTGATGTCGACGCGAGGGCTCCTTGATGCTCTCTCTCACGCTCTCCGGAATCCGTCTTCTCCTTCCGTCGCTCAGTGCGCTGCTGGTACCATTTTCAGCTTACTCACTGTCGAGTCGTATCGGTCTATTATTGGGCACAAGCGTGATATCCTTTTTGGTCTTATAGACATAATAAAAAACCCTAATTCGGATTCTAGAACTGTAAAAGATGCTCTCAAAGCTCTTTTTGGTATTGCGCTTTACCCGATGAATCGTGCTCATATTATTGAGCTTGGAGCTGTACCTCCGTTGTTTTCATTGCTGTGTA</genome_strand>
        <mrna_strand>GCGGCACACCAAACTCTGTAACACAAAAGTCAACAATGGAGTATTTATATTGTTGATGTCTATGTATATCCAAATTATATAAAAGCAATTTCGGATTAGTTCAACGAATAGTAATGCTGAATTTGCTCTAGAAAAAAATATCATCGGAAATGGAGGTCAAACGAAGGGCGGTGAAGAATCTCGTTACGAAGCTGAGTTCCGTATCGGAGCAGACACGAACAGAAGCAATTTGTGAGCTGAGATTGATTTCGAAGAACGATTCCGATAGCAGACCGTTGATCGCCGACGCCGGTGCGGTTCCGTATTTGTCGGAATCGCTGTACTCGTCGAATAAATTGTCTCAGGAGAACGCAACTGCGGCGTTGCATAATCTATCAATTTCTCATAAAGACTTGTTGATGTCGACGCGAGGGCTCCTTGATGCTCTCTCTCACGCTCTCCGGAATCCGTCTTCTCCTTCCGTCGCTCAGTGCGCTGCTGGTACCATTTTCAGCTTACTCACTGTCGAGTCGTATCGGTCTATTATTGGGCACAAGCGTGATATCCTTTTTGGTCTTATAGACATAATAAAAAACCCTAATTCGGATTCTAGAACTGTAAAAGATGCTCTCAAAGCTCTTTTTGGTATTGCGCTTTACCCGATGAATCGTGCTCATATTATTGAGCTTGGAGCTGTACCTCCGCTGTTTTCATTGCTGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582837" ref_strand="+" ref_description="SGN-U582837 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|118483775|gb|ABK93780.1| (e_value=2e-154) unknown; (*ATH) AT5G07030.1 (e_value=5e-148)  Symbol: None | similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:At3g54400.1); similar to putative nucleoid DNA-binding-like protein [Oryza sativa (japonica cultivar-group)] (GB:XP_463752.1); contains InterPro domain Aspartic ... ; (*SWP) sp|Q766C3|NEP1_NEPGR (e_value=2e-44) Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1; ">
      <seq>ccaaatggagggctctatcaatattctctcattatcccttgtcttaattttgagcctagcacaagggggactaaccaaccccaattgtgccaagttttaccatgacaacaaagactcatcaacactacaagtcattcatgtagacagcccttgttctcctcttaaacaacaacaaaatgcacactcattatcatgggtggatagtgttctccaaatgcaaaataaggacacaaataggctacaattcttggctagccttgttgctggtaaatcttttgtccctatagcttctggtagacaaattctacaaacaccaacttatattgtcaaggctaaaattgggacaccacctcaacctttgttggtggctttggataatagtaatgatttttcttggttcccctgtggtggatgtgttggttgctcttctaatgttttttcatatgacaagtctaccactttcagcaatgttagctgtgaacgtgcctcatgtaacctggtaccaagacgggactgcgacgcagccacctgcagcttcaacctaacctacggtggttcgagcataggtggaaccctctcatcggaaacattggcactcgccaccgatccggtacccggatttctctttggttgcgtaaaaaagatctccggcagcaacacaccacctcagggtctattagctttgggccgtggtttattatcatttatatcccaatctgaaagcctctacaagtccacattctcctattgtttgcccagttacaaatctcccaatttttctggcacacttagattaggcccaaaaggccagccactgaggattaaaaccacaccattgctaagaaacccaaggagatcatccttttactatgtcaatttagtcggagttaaagtcggaaaacgaatcgtcgatatccctcccagtgcattcgctttcgattccaacaccggcgccggcacaataatcgattccggcactgtgtttaccagactcgttgaccaagcttacacggcggtgagaaatgaattcaggaggagaatggggaggaacgcgacggtgacatcacttggtggattcgacacctgctacaccgtccctataacaattccaacaataacatttatgttcgccggaatgaacgtgacgctgccgcaagacaacttcctgattaaaagtagctcaagcagcaccacttgcttagccatggctgcttcacctaccgatccagtgaattccgtgctcaacgtgatcgccagctggcagcaacagaatcatcggattctctttgacgtaccaaattctagggttggggttgcccgtgaaacctgtagctgaaaaacaaatggaggccacttacttaattgggttttggatttttattaattaagtttaatcatttgatgggaccttatttttatttttatgtgttctttttttagttaattgttagaggtttggcactttaatattgtcgggtcggtgcattttcgttttttggatttttatgtgttcacgggttgaaattaatacttccctgtttgcagatactttcttgtttattagtttcctaccatcaatggaaaaaataaaataaaatgattactggtcccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="-" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="101815" stop="98215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101515" g_stop="101017" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101016" i_stop="99729" i_length="1288">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99728" g_stop="99254" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="974" r_length="475" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99253" i_stop="99155" i_length="99">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99154" g_stop="98515" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="975" r_stop="1614" r_length="640" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="-" ref_id="SGN-U582837" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101515" e_stop="101017"/>
          <exon e_start="99728" e_stop="99254"/>
          <exon e_start="99154" e_stop="98515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATGGAGGGCTCTATCAATATTCTCTCATTATCCCTTGTCTTAATTTTGAGCCTAGCACAAGGGGGACTAACCAACCCCAATTGTGCCAAGTTTTACCATGACAACAAAGACTCATCAACACTACAAGTCATTCATGTAGACAGCCCTTGTTCTCCTCTTAAACAACAACAAAATGCACACTCATTATCATGGGTGGATAGTGTTCTCCAAATGCAAAATAAGGACACAAATAGGCTACAATTCTTGGCTAGCCTTGTTGCTGGTAAATCTTTTGTCCCTATAGCTTCTGGTAGACAAATTCTACAAACACCAACTTATATTGTCAAGGCTAAAATTGGGACACCACCTCAACCTTTGTTGGTGGCTTTGGATAATAGTAATGATTTTTCTTGGTTCCCCTGTGGTGGATGTGTTGGTTGCTCTTCTAATGTTTTTTCATATGACAAGTCTACCACTTTCAGCAATGTTAGCTGTGAACGTGCCTCATGTAACCTGGTAATTATTCCCTCTCTTCGTTTTAATTTATTTGTTTGATTTAACAAGGTTAAACATAAAATTAATCATTTTCTTTCGGAATAGACTAAAGATGAAAAGTAATACAAACAAATTGAAATGAGAAAAAATGAGCTGTTTTAATTTGTTTGATTGACGATGGATTTAAGAAAGTAAAAAAAAAAATATTTGACTCCTTCCATTAGAAATTAAAAATACGTAAAATGTACTAAAATACGAGTTTTGCGTGTCTCATGAGAAATTAAAAGGATATGTAGTAGTACAACTTATCCTCTTCTTTCTCATTTCCAAGTTTAAGAAAGAACCAGAGGCTTTTGGGTTTATCAAAAGTGTTTTTATTCATAAAGATGCTCGTGATGACATTGATAACTATAAGAGCTTTAGTTAAAATATAAAGGGAGTATTATTTAATAAAGTATTGACATGTATCATTTTTGTCGTAACAAATTAAAACAGAAAAAGCGTCAACGAGAGTAACATTTATGCAACATATACAGGATTATTTTGTGTTTTAATTTAACTTAGCATAAAATTAAAAAAAAAACTTTTACTTTATGATTTTAACTATGTCATTGTATGTTGGAATTAGAAAGTTATTACATAGAAAATGACATTTATATTTGAATCAAGACTAAATAAAAGACATAAATTTGAAAATGACATTTTTTTAGAAATAAGAATTAAAAGGGAGACATAAATTGTGTAGTAGTAACAGAATGAGTAGATTTAGTAGTTGTAACTTTAAATATTGTAGGTACATTTCTTCTATCATGGAATATCAACCACATATTTGTTATTTTTTTGGATAAATATGACTCTTACAAAGATAATATTTGAGTGAAATAAAAGCTTAGCTAGATCCATTCATACTTTGTTTATTTAACAATAAATACATAGATTTTTAAAAAAAATAAGGTTTTAACTGTGTGTAACATTAATTTATTCAGAATTAAAAAATATGATTTGCTTCCATGTTACTCGATGAAAGAGCAAAATCCGAAAAAAGTAGGTGGAAATTAGATTAAGCTAATCATTCCTTTAAGATCCTGTTATACTTGTAATTATTGGTGCAATAGCTAACGCGCTTGATACAGCGCGTGAAGCCTGAAAGTTATTCCTTGCTTCCTGGCATTGTCGGTAACAATGCAATCAGCCGCAGTGTTATCCGGCCCGTGACTTTTGTCACATGATGATTTGATCATACATTTTTATTCTTTTATTAATTAGAATTGAATTTTTATTAATAAAGTAAAAATTAATATTTATTCAGGTACCAAGACGGGACTGCGACGCAGCCACCTGCAGCTTCAACCTAACCTACGGTGGTTCGAGCATAGGTGGAACCCTCTCATCGGAAACATTGGCACTCGCCACCGATCCGGTACCCGGATTTCTCTTTGGTTGCGTAAAAAAGATCTCCGGCAGCAACACACCACCTCAGGGTCTATTAGCTTTGGGCCGTGGTTTATTATCATTTATATCCCAATCTGAAAGCCTCTACAAGTCCACATTCTCCTATTGTTTGCCCAGTTACAAATCTCCCAATTTTTCTGGCACACTTAGATTAGGCCCAAAAGGCCAGCCACTGAGGATTAAAACCACACCATTGCTAAGAAACCCAAGGAGATCATCCTTTTACTATGTCAATTTAGTCGGAGTTAAAGTCGGAAAACGAATCGTCGATATCCCTCCCAGTGCATTCGCTTTCGATTCCAACACCGGCGCCGGCACAATAATCGATTCCGGTATAATCAAATTTTTAAATTTATTTCTTGTAAGTAATATAACACTAATCAGAACTATAATACTAATTTTAATTATTTTTTTGTGTGTGGAATTGTTAGGCACTGTGTTTACCAGACTCGTTGACCAAGCTTACACGGCGGTGAGAAATGAATTCAGGAGGAGAATGGGGAGGAACGCGACGGTGACATCACTTGGTGGATTCGACACCTGCTACACCGTCCCTATAACAATTCCAACAATAACATTTATGTTCGCCGGAATGAACGTGACGCTGCCGCAAGACAACTTCCTGATTAAAAGTAGCTCAAGCAGCACCACTTGCTTAGCCATGGCTGCTTCACCTACCGATCCAGTGAATTCCGTGCTCAACGTGATCGCCAGCTGGCAGCAACAGAATCATCGGATTCTCTTTGACGTACCAAATTCTAGGGTTGGGGTTGCCCGTGAAACCTGTAGCTGAAAAACAAATGGAGGCCACTTACTTAATTGGGTTTTGGATTTTTATTAATTAAGTTTAATCATTTGATGGGACCTTATTTTTATTTTTATGTGTTCTTTTTTTAGTTAATTGTTAGAGGTTTGGCACTTTAATATTGTCGGGTCGGTGCATTTTCGTTTTTTGGATTTTTATGTGTTCACGGGTTGAAATTAATACTTCCCTGTTTGCAGATACTTTCTTGTTTATTAGTTTCCTACCATCAATGGAAAAAATAAAATAAAATGATTACTGGTCCCTTC</genome_strand>
        <mrna_strand>CCAAATGGAGGGCTCTATCAATATTCTCTCATTATCCCTTGTCTTAATTTTGAGCCTAGCACAAGGGGGACTAACCAACCCCAATTGTGCCAAGTTTTACCATGACAACAAAGACTCATCAACACTACAAGTCATTCATGTAGACAGCCCTTGTTCTCCTCTTAAACAACAACAAAATGCACACTCATTATCATGGGTGGATAGTGTTCTCCAAATGCAAAATAAGGACACAAATAGGCTACAATTCTTGGCTAGCCTTGTTGCTGGTAAATCTTTTGTCCCTATAGCTTCTGGTAGACAAATTCTACAAACACCAACTTATATTGTCAAGGCTAAAATTGGGACACCACCTCAACCTTTGTTGGTGGCTTTGGATAATAGTAATGATTTTTCTTGGTTCCCCTGTGGTGGATGTGTTGGTTGCTCTTCTAATGTTTTTTCATATGACAAGTCTACCACTTTCAGCAATGTTAGCTGTGAACGTGCCTCATGTAACCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAGACGGGACTGCGACGCAGCCACCTGCAGCTTCAACCTAACCTACGGTGGTTCGAGCATAGGTGGAACCCTCTCATCGGAAACATTGGCACTCGCCACCGATCCGGTACCCGGATTTCTCTTTGGTTGCGTAAAAAAGATCTCCGGCAGCAACACACCACCTCAGGGTCTATTAGCTTTGGGCCGTGGTTTATTATCATTTATATCCCAATCTGAAAGCCTCTACAAGTCCACATTCTCCTATTGTTTGCCCAGTTACAAATCTCCCAATTTTTCTGGCACACTTAGATTAGGCCCAAAAGGCCAGCCACTGAGGATTAAAACCACACCATTGCTAAGAAACCCAAGGAGATCATCCTTTTACTATGTCAATTTAGTCGGAGTTAAAGTCGGAAAACGAATCGTCGATATCCCTCCCAGTGCATTCGCTTTCGATTCCAACACCGGCGCCGGCACAATAATCGATTCCG...................................................................................................GCACTGTGTTTACCAGACTCGTTGACCAAGCTTACACGGCGGTGAGAAATGAATTCAGGAGGAGAATGGGGAGGAACGCGACGGTGACATCACTTGGTGGATTCGACACCTGCTACACCGTCCCTATAACAATTCCAACAATAACATTTATGTTCGCCGGAATGAACGTGACGCTGCCGCAAGACAACTTCCTGATTAAAAGTAGCTCAAGCAGCACCACTTGCTTAGCCATGGCTGCTTCACCTACCGATCCAGTGAATTCCGTGCTCAACGTGATCGCCAGCTGGCAGCAACAGAATCATCGGATTCTCTTTGACGTACCAAATTCTAGGGTTGGGGTTGCCCGTGAAACCTGTAGCTGAAAAACAAATGGAGGCCACTTACTTAATTGGGTTTTGGATTTTTATTAATTAAGTTTAATCATTTGATGGGACCTTATTTTTATTTTTATGTGTTCTTTTTTTAGTTAATTGTTAGAGGTTTGGCACTTTAATATTGTCGGGTCGGTGCATTTTCGTTTTTTGGATTTTTATGTGTTCACGGGTTGAAATTAATACTTCCCTGTTTGCAGATACTTTCTTGTTTATTAGTTTCCTACCATCAATGGAAAAAATAAAATAAAATGATTACTGGTCCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588795" ref_strand="+" ref_description="SGN-U588795 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aaccctggtnctgaaaacaaatggaggccacttacttaattgggttttggatttttattaaataaggtcccatcaaatgattaaacttaattttattcttatgtgttctttttttagttaattgttagaggtttggcactttaatattgtcgggtcggtgcattttcgttttttggatttttatgtgttcacgggttgaaattaatacttccctgtttgcagatactttcttgtttattagtttcctaccatcaatggaaaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="-" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="99096" stop="98240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98806" g_stop="98540" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="-" ref_id="SGN-U588795" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U588795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98806" e_stop="98540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTGTAGCTGAAAAACAAATGGAGGCCACTTACTTAATTGGGTTTTGGATTTTTATTAATTAA-GTTTAATCATTTGATGGGACCTTATTTTTATTTTTATGTGTTCTTTTTTTAGTTAATTGTTAGAGGTTTGGCACTTTAATATTGTCGGGTCGGTGCATTTTCGTTTTTTGGATTTTTATGTGTTCACGGGTTGAAATTAATACTTCCCTGTTTGCAGATACTTTCTTGTTTATTAGTTTCCTACCATCAATGGAAAAAATA</genome_strand>
        <mrna_strand>AACCCTGGTNCTGA-AAACAAATGGAGGCCACTTACTTAATTGGGTTTTGGATTTTTATTAAATAAGGTCCCATCAAATGAT-TAAACTTAATTTTATTCTTATGTGTTCTTTTTTTAGTTAATTGTTAGAGGTTTGGCACTTTAATATTGTCGGGTCGGTGCATTTTCGTTTTTTGGATTTTTATGTGTTCACGGGTTGAAATTAATACTTCCCTGTTTGCAGATACTTTCTTGTTTATTAGTTTCCTACCATCAATGGAAAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563564" ref_strand="+" ref_description="SGN-U563564 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|75153341|sp|Q8H9D2|NQR_SOLTU (e_value=5e-90) NAD(P)H:quinone; (*ATH) AT3G27890.1 (e_value=1e-66) | Symbol: None | NADPH-dependent FMN reductase family protein, contains Pfam profile: PF03358 NADPH-dependent FMN reductase | chr3:10351893-10353206 REVERSE | Aliases: K16N12.13; (*SWP) sp|Q8H9D2|NQR_SOLTU (e_value=3e-91) NAD(P)H:quinone oxidoreductase OS=Solanum tuberosum; ">
      <seq>ggggacaggcacaaaaaaggtgttaattaagatgataggaaatgaggttcgtcatcgcgtccgtcaggtccggctttccaaatttcagtatatatatttgtgctgaaaagaaacaacaagattgaaaaaaaaaaaagagaaggaaaaaaatatattcaggggaatgcaagcagcggcgatggcggctcaaccagtaatcaaggtagctgggctttgcggttccctccgtaaaggttcctacaatcgtggtctcctcaatgccgcgatggagatatgcaaggattctataacgggaatggagatcgagtacgtcgatatatcgccgttgccgtttctgaacacggatcttgaggtggacgggacttatcccccggttgtcgaggcttttcgtaagaaaattgaagaagctgattgtttcctttttgcttctccagagtacaattactccatcacaggaccgttgaagaatgcaattgattgggcctctcgacctccaaatgtttgggctgataaagcagcagcaatggtgagtgctggaggtggctttggtggaggacgatcacaatatcacctccgacagataggagtcttccttgatcttcatttcattaacaaacctgaatttttcctgaacgcgttccagcaaccaccaaagtttgacagtgatggtgtgctgacagatgaagaaaccaagcagagactcagagcagttcttttggctttacaagcactttccttgaaactcaaaggcaagtgtgaatagtttctaccagtaaatgtggtccatttcttcctccaatgttgcgtgaaaatgcttgagcgaccgtcgggaaagatttttagcggggttggtaaagaattgacatttccagctcacatgggaataaatatctacttatccagtattgaaaatttcatggtaattgatgtaatggctcctacattttttctctgtctttcgttttctgttctatcagcaacacgtttgttttacaaaatatcatcaatacatttacttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="+" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="117705" stop="120575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118003" g_stop="118264" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118265" i_stop="118373" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118374" g_stop="118565" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="455" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118566" i_stop="119710" i_length="1145">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119711" g_stop="120275" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="1020" r_length="565" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="+" ref_id="SGN-U563564" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1019</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118003" e_stop="118264"/>
          <exon e_start="118374" e_stop="118565"/>
          <exon e_start="119711" e_stop="120275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTACAGGCACAAAAAAGGTGTTAATTAAGATGATAGGAAATAAGGTTCGTCATCGCGTCCGTCAGGTCCGGCTTTCCAAATTTCAGTATATATATTTGTGCTGAAAAGAAACAACAAGATTG-AAAAAAAAAAAGAGAAGGAAAAAAATATATTCAGGGGAATGCAAGCAGCGGCGATGGCGGCTCAACCAGTAATCAAGGTAGCTGGGCTTTGCGGTTCCCTCCGTAAAGGTTCCTACAATCGTGGTCTCCTCAATGCCGGTAAACTTTATTTTTTTCTGTTTATTTAAAAAAAGAATTGTTTCAGTATATGCATTTGGTGCTTCCGTGCTTGTAATTGCAACTCATGTTGTGTGATTGTTGGGCTTAGCGATGGAGATATGCAAGGATTCTATAACGGGAATGGAGATCGAGTACGTCGATATATCGCCGTTGCCGTTTCTGAACACGGATCTTGAGGTGGACGGGACTTATCCCCCGGTTGTCGAGGCTTTTCGTAAGAAAATTGAAGAAGCTGATTGTTTCCTTTTTGCTTCTCCAGAGTACAATTACTCCATCACAGGTGTCCAACTCTTTTTTTTTTTTTACCTTTTTTTCATATTTCTCTAATTGATGCTCCTTAGCTACCTTGAAGTTAATTAGACTTAAAATGATTGTTGATTTTGGAGATCTTACTGTTGCTAGTCTAAATTTAGGTAAAAATTAGAATAGTTTGAAAGGTTTCTCGAATCAAGAGTAGCTTGGTTCTGGAGAAGGAGGGTAAGAATATGTCAACTATGAATTGCCATTTCCGATTAATGCTTTAATTGGTCTGAGATTTGATTACTCTAGTGCTATTTCGACTTCTATGCACTGAGAATCTGAATACTTGTTATCATGCATGATTATCTATGGTGAGCCACAGAGCTTGTTTTATCGAAAAAGGAACAAAAGAAATTCAGGCCCATGGTCACTATTGCTAATTCAAAAACACATACTTTTTTGGTGCAACTTTAGCTTTTATTTGATGGAGGTTGAACCAGGGATATGTTTCAAATGAAAATGGTTCTTTTGCAAAAAATGATAGCATACATAAGCTGTAGTTGAAACTGTTATTGCTAAAGAAAAAGTTCCGCGTTAGCACAAAATGATGATATGAAAATATATTTATCATCCGTGATATTTATCTCATTTCAGGCTATATGTAACATGAGCTTCTTTAGAAGATCAATGAGAGCAAAATTAAGAACTTGGTAGGATGCCCTTTATATATATTTTTAGAAAAAGAACTTGATAGGGATACCTAAATGTATTTGGCTGTAAACCATGAATAAATGAATGTGGTAACTAGCTCCGTAGACAGCTGAAATACTCCCAGAGACTCTTCAAGTCAAGGTGCGGGAGAGATGTCTTCTCAGCTTGTCTTTCAGGTTGATATGATGAATAGTTAATAAATCTTCTCTTATGGGTTAAATTGGTTCAATTGATTGTACGAGCACTACAATGGGTGTGACCACTAGAGTTGAGGTAATCAAAGTCTACATCTTAATACAAACAGATAAATTGGTCCCCTAGTTTAAATCCAAACAATTATAATATGAAAGTATGGTAAATTAGGCTCTGTATATGCAGGTAGTTTTAGGTTGCTAGACTAGTGTTGATGGATTTTTACTTCTTCTGATGACACTCTTGGTACTTATGACTATCATTTTGGTGCTCCTTGGGTAGGACCGTTGAAGAATGCAATTGATTGGGCCTCTCGACCTCCAAATGTTTGGGCTGATAAAGCAGCAGCAATGGTGAGTGCTGGAGGTGGCTTTGGTGGAGGACGATCACAATATCACCTCCGACAGATAGGAGTCTTCCTTGATCTTCATTTCATTAACAAACCTGAATTTTTCCTGAACGCGTTCCAGCAACCACCAAAGTTTGACAGTGATGGTGTGCTGACAGATGAAGAAACCAAGCAGAGACTCAGAGCAGTTCTTTTGGCTTTACAAGCACTTTCCTTGAAACTCAAAGGCAAGTGTGAATAGTTTCTACCAGTAAATGTGGTCCATTTCTTCCTCCAATGTTGCGTGAAAATGCTTGAGCGACCGTCGGGAAAGATTTTTAGCGGGGTTGGTAAAGAATTGACATTTCCAGCTCACATGGGAATAAATATCTACTTATCCAGTATTGAAAATTTCATGGTAATTGATGTAATGGCTCCTACATTTTTTCTCTGTCTTTCGTTTTCTGTTCTATCAGCAACACGTTTGTTTTACAAAATATCATCAATACATTTACTTCG</genome_strand>
        <mrna_strand>GGGGACAGGCACAAAAAAGGTGTTAATTAAGATGATAGGAAATGAGGTTCGTCATCGCGTCCGTCAGGTCCGGCTTTCCAAATTTCAGTATATATATTTGTGCTGAAAAGAAACAACAAGATTGAAAAAAAAAAAAGAGAAGGAAAAAAATATATTCAGGGGAATGCAAGCAGCGGCGATGGCGGCTCAACCAGTAATCAAGGTAGCTGGGCTTTGCGGTTCCCTCCGTAAAGGTTCCTACAATCGTGGTCTCCTCAATGCCG.............................................................................................................CGATGGAGATATGCAAGGATTCTATAACGGGAATGGAGATCGAGTACGTCGATATATCGCCGTTGCCGTTTCTGAACACGGATCTTGAGGTGGACGGGACTTATCCCCCGGTTGTCGAGGCTTTTCGTAAGAAAATTGAAGAAGCTGATTGTTTCCTTTTTGCTTCTCCAGAGTACAATTACTCCATCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGTTGAAGAATGCAATTGATTGGGCCTCTCGACCTCCAAATGTTTGGGCTGATAAAGCAGCAGCAATGGTGAGTGCTGGAGGTGGCTTTGGTGGAGGACGATCACAATATCACCTCCGACAGATAGGAGTCTTCCTTGATCTTCATTTCATTAACAAACCTGAATTTTTCCTGAACGCGTTCCAGCAACCACCAAAGTTTGACAGTGATGGTGTGCTGACAGATGAAGAAACCAAGCAGAGACTCAGAGCAGTTCTTTTGGCTTTACAAGCACTTTCCTTGAAACTCAAAGGCAAGTGTGAATAGTTTCTACCAGTAAATGTGGTCCATTTCTTCCTCCAATGTTGCGTGAAAATGCTTGAGCGACCGTCGGGAAAGATTTTTAGCGGGGTTGGTAAAGAATTGACATTTCCAGCTCACATGGGAATAAATATCTACTTATCCAGTATTGAAAATTTCATGGTAATTGATGTAATGGCTCCTACATTTTTTCTCTGTCTTTCGTTTTCTGTTCTATCAGCAACACGTTTGTTTTACAAAATATCATCAATACATTTACTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563562" ref_strand="+" ref_description="SGN-U563562 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|75153341|sp|Q8H9D2|NQR_SOLTU (e_value=2e-85) NAD(P)H:quinone; (*ATH) AT3G27890.1 (e_value=8e-70) | Symbol: None | NADPH-dependent FMN reductase family protein, contains Pfam profile: PF03358 NADPH-dependent FMN reductase | chr3:10351893-10353206 REVERSE | Aliases: K16N12.13; (*SWP) sp|Q8H9D2|NQR_SOLTU (e_value=2e-86) NAD(P)H:quinone oxidoreductase OS=Solanum tuberosum; ">
      <seq>gtggtgatggcggctgaagcagtaatcaaggtagtagcactctgcggttccctccgtgaagcctcctataatcgcggtctcctcaatgccgcaatggagatatgcaaggattctataaagggaatggagattgagtacgtcgatctatcgttgttgccgtttacaaacgaggaccttgaggtgaacggaacttatccaggcgaagtagaggtttttcgtaaaaaaattgaagaagctgattgtttcctctttgcttctcccgaatacaattactccgttacagcaccattgaaaaatgcaattgattgggcatctcgacctcctaatgtttgggctgataaatcagcagcaattgtgagtgctggaggtaactttggtggaggacgagcacactatcatcttcgacaaattggaatctacattgatcttcatttcattaacaagcctgaacttttcgtgtttgcatttgaatcaccaccaaagtttgacagcaacggtgtgctgatacatgaagaaaccaagcacaaactcagatcagtccttttagctttacaggcatttgccttgagactcaaaagtcaagtatgaatagcttctaattgtatcccttcaataattttcaactctgtttgaaattaaagcgtagttattattattttcgattgttgttcaaaatcaaaaacaataaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="-" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="122559" stop="120961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122259" g_stop="122169" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122168" i_stop="121929" i_length="240">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121928" g_stop="121737" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="283" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121736" i_stop="121653" i_length="84">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121652" g_stop="121263" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="674" r_length="391" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="-" ref_id="SGN-U563562" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U563562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122259" e_stop="122169"/>
          <exon e_start="121928" e_stop="121737"/>
          <exon e_start="121652" e_stop="121263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTGATGGCGGCTGAAGCAGTAATCAAGGTAGTAGCACTCTGCGGTTCCCTCCGTGAAGCCTCCTATAATCGCGGTCTCCTCAATGCCGGTACACCTTTTTCTTTCCTCCTCTGTTTCTCTGTTTTGCTTTTTTCTGTTTTCTATCCGGTGTTTAGTATCCGTATGGGAGTTCAATTAATTCAGATTCACGCCGAATAGAGCTTCATTTAGGGATAGCACGGAAATCAGGATATTTTTTTATAGCTAAGGCTCGAATTTTAAACACAACAATTAAGAAATAAAACCTTTAAATCATGTTGTGTGATTGATGATCTGTAATTGCGCGTAGCAATGGAGATATGCAAGGATTCTATAAAGGGAATGGAGATTGAGTACGTCGATCTATCGTTGTTGCCGTTTACAAACGAGGACCTTGAGGTGAACGGAACTTATCCAGGCGAAGTAGAGGTTTTTCGTAAAAAAATTGAAGAAGCTGATTGTTTCCTCTTTGCTTCTCCCGAATACAATTACTCCGTTACAGGTACGCAGAGTCCGAGCTAAAATTTTGAATTTATGAATACAAATTCAAACACAGTTAACTCTTTACTCTGTTTTTTTTTTCCAGCACCATTGAAAAATGCAATTGATTGGGCATCTCGACCTCCTAATGTTTGGGCTGATAAATCAGCAGCAATTGTGAGTGCTGGAGGTAACTTTGGTGGAGGACGAGCACACTATCATCTTCGACAAATTGGAATCTACATTGATCTTCATTTCATTAACAAGCCTGAACTTTTCGTGTTTGCATTTGAATCACCACCAAAGTTTGACAGCAACGGTGTGCTGATACATGAAGAAACCAAGCACAAACTCAGATCAGTCCTTTTAGCTTTACAGGCATTTGCCTTGAGACTCAAAAGTCAAGTATGAATAGCTTCTAATTGTATCCCTTCAATAATTTTCAACTCTGTTTGAAATTAAAGCGTAGTTATTATTA-TTTCGATTGTTGTTCAAC</genome_strand>
        <mrna_strand>GTGGTGATGGCGGCTGAAGCAGTAATCAAGGTAGTAGCACTCTGCGGTTCCCTCCGTGAAGCCTCCTATAATCGCGGTCTCCTCAATGCCG................................................................................................................................................................................................................................................CAATGGAGATATGCAAGGATTCTATAAAGGGAATGGAGATTGAGTACGTCGATCTATCGTTGTTGCCGTTTACAAACGAGGACCTTGAGGTGAACGGAACTTATCCAGGCGAAGTAGAGGTTTTTCGTAAAAAAATTGAAGAAGCTGATTGTTTCCTCTTTGCTTCTCCCGAATACAATTACTCCGTTACAG....................................................................................CACCATTGAAAAATGCAATTGATTGGGCATCTCGACCTCCTAATGTTTGGGCTGATAAATCAGCAGCAATTGTGAGTGCTGGAGGTAACTTTGGTGGAGGACGAGCACACTATCATCTTCGACAAATTGGAATCTACATTGATCTTCATTTCATTAACAAGCCTGAACTTTTCGTGTTTGCATTTGAATCACCACCAAAGTTTGACAGCAACGGTGTGCTGATACATGAAGAAACCAAGCACAAACTCAGATCAGTCCTTTTAGCTTTACAGGCATTTGCCTTGAGACTCAAAAGTCAAGTATGAATAGCTTCTAATTGTATCCCTTCAATAATTTTCAACTCTGTTTGAAATTAAAGCGTAGTTATTATTATTTTCGATTGTTGTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587118" ref_strand="+" ref_description="SGN-U587118 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gtggtgatggcggctgaagcattaatcaaggtagtagcactctgcggttccctccgggaagcctcctataatcgcggtctcctcagtgcctcaatggagataggcaaggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0140O23-lzXPS/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0140O23.1" temp_strand="-" temp_description="C01HBa0140O23.1  AC238911.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0140O23 upload_account_name:manual">
        <position start="122559" stop="121870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122259" g_stop="122169" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122168" i_stop="121929" i_length="240">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121928" g_stop="121907" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="113" r_length="22" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0140O23.1" gen_strand="-" ref_id="SGN-U587118" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>113</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0140O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U587118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122259" e_stop="122169"/>
          <exon e_start="121928" e_stop="121907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTGATGGCGGCTGAAGCAGTAATCAAGGTAGTAGCACTCTGCGGTTCCCTCCGTGAAGCCTCCTATAATCGCGGTCTCCTCAATGCCGGTACACCTTTTTCTTTCCTCCTCTGTTTCTCTGTTTTGCTTTTTTCTGTTTTCTATCCGGTGTTTAGTATCCGTATGGGAGTTCAATTAATTCAGATTCACGCCGAATAGAGCTTCATTTAGGGATAGCACGGAAATCAGGATATTTTTTTATAGCTAAGGCTCGAATTTTAAACACAACAATTAAGAAATAAAACCTTTAAATCATGTTGTGTGATTGATGATCTGTAATTGCGCGTAGCAATGGAGATATGCAAGGATTC</genome_strand>
        <mrna_strand>GTGGTGATGGCGGCTGAAGCATTAATCAAGGTAGTAGCACTCTGCGGTTCCCTCCGGGAAGCCTCCTATAATCGCGGTCTCCTCAGTGCCT................................................................................................................................................................................................................................................CAATGGAGATAGGCAAGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>23</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="13225" PGL_stop="9557"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13225" e_stop="13207"/>
            <exon e_start="12399" e_stop="12302"/>
            <exon e_start="11067" e_stop="10989"/>
            <exon e_start="10863" e_stop="10603"/>
            <exon e_start="10513" e_stop="10346"/>
            <exon e_start="9802" e_stop="9557"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13225" e_stop="13207" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.986">
            <gDNA_intron_boundary i_start="13206" i_stop="12400" i_length="807"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12399" e_stop="12302" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12301" i_stop="11068" i_length="1234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11067" e_stop="10989" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.995">
            <gDNA_intron_boundary i_start="10988" i_stop="10864" i_length="125"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10863" e_stop="10603" e_length="261"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.991">
            <gDNA_intron_boundary i_start="10602" i_stop="10514" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10513" e_stop="10346" e_length="168"/>
          </exon>
          <intron i_serial="5" don_prob="0.956" acc_prob="0.988">
            <gDNA_intron_boundary i_start="10345" i_stop="9803" i_length="543"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="9802" e_stop="9557" e_length="246"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13225" stop="13207"/>
              <exon start="12399" stop="12302"/>
              <exon start="11067" stop="10989"/>
              <exon start="10863" stop="10603"/>
              <exon start="10513" stop="10346"/>
              <exon start="9802" stop="9557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600869" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGACATGATAAGTGATAAG : GTAAGAACTGATGCTTATCGGCAAGCCATTCTGGAGAATCCTTCTCTCTTAAAAGGCGCTGTAGTCATGGATGTAGGTTGTGGTACTGGCATATTGAG : TCTCTTTGCAGCCCAAGCAGGTGCGTCAAGGGTGATTGCAGTTGAAGCAAGTGAAAAGATGGCAGCTGTGGCAGCTAAG : ATTGCTAAAGACAATAACCTTTTGCGGATTGGAAGCAAGAATGAAGGTTCTGATCAAGGCAATGGTGTGATGGAAGTGGTTCAAGGAATGGTTGAAGAGCTAAAGAGTGCCCAGAAAGTTCAGCCACACAGTGTTGATGTGTTAGTGAGTGAATGGATGGGTTATTGCCTGCTTTATGAGTCAATGCTCAGCTCTGTCCTGTATGCACGTGATCAATTTTTGAAGCCTGGAGGTGCCGTTCTTCCTGACATGGCAACAATG : TTTGCTGCTGGGTTTGGAAGAGGCGGTACAAGCATTCCATTTTGGGAAAATGTTTATGGCTTTAATATGTCTTGTATCGGCGAGGAAATCGTTAAAGATGCTTCCAGAATTCCAATAGTTGATGTTGTTGACAGTCGTGATATAATAACCAATTCAAAAGTTCTCCAG : AACTTTGATCTGGTGACTATGAAGCTGGAGGAGATGGATTTTACAGGAATGGTTGAACTGGAGCTGAAGGGAGAAACTTCTGCAAACGGGTCTACAGGTTCAAAACCTGTAACAAACTGGTGTTATGGAGTTGTCGTTTGGTTTGAAACTGGATTTACAGAAAGATTCTGTAAAGAAAAGCCAACTAACTTGTCCACATCTCCCCATACTACCAGCACTCACTGGTCGCAGACTATCCTCACTTTC</gDNA_template>
            <first_frame> G  H  D  K  *  *   : G  K  N  *  C  L  S  A  S  H  S  G  E  S  F  S  L  K  R  R  C  S  H  G  C  R  L  W  Y  W  H  I  E  :  S  L  C  S  P  S  R  C  V  K  G  D  C  S  *  S  K  *  K  D  G  S  C  G  S  *   : D  C  *  R  Q  *  P  F  A  D  W  K  Q  E  *  R  F  *  S  R  Q  W  C  D  G  S  G  S  R  N  G  *  R  A  K  E  C  P  E  S  S  A  T  Q  C  *  C  V  S  E  *  M  D  G  L  L  P  A  L  *  V  N  A  Q  L  C  P  V  C  T  *  S  I  F  E  A  W  R  C  R  S  S  *  H  G  N  N   : V  C  C  W  V  W  K  R  R  Y  K  H  S  I  L  G  K  C  L  W  L  *  Y  V  L  Y  R  R  G  N  R  *  R  C  F  Q  N  S  N  S  *  C  C  *  Q  S  *  Y  N  N  Q  F  K  S  S  P   : E  L  *  S  G  D  Y  E  A  G  G  D  G  F  Y  R  N  G  *  T  G  A  E  G  R  N  F  C  K  R  V  Y  R  F  K  T  C  N  K  L  V  L  W  S  C  R  L  V  *  N  W  I  Y  R  K  I  L  *  R  K  A  N  *  L  V  H  I  S  P  Y  Y  Q  H  S  L  V  A  D  Y  P  H  F  </first_frame>
            <second_frame>  D  M  I  S  D  K  :  V  R  T  D  A  Y  R  Q  A  I  L  E  N  P  S  L  L  K  G  A  V  V  M  D  V  G  C  G  T  G  I  L  S :   L  F  A  A  Q  A  G  A  S  R  V  I  A  V  E  A  S  E  K  M  A  A  V  A  A  K  :  I  A  K  D  N  N  L  L  R  I  G  S  K  N  E  G  S  D  Q  G  N  G  V  M  E  V  V  Q  G  M  V  E  E  L  K  S  A  Q  K  V  Q  P  H  S  V  D  V  L  V  S  E  W  M  G  Y  C  L  L  Y  E  S  M  L  S  S  V  L  Y  A  R  D  Q  F  L  K  P  G  G  A  V  L  P  D  M  A  T  M  :  F  A  A  G  F  G  R  G  G  T  S  I  P  F  W  E  N  V  Y  G  F  N  M  S  C  I  G  E  E  I  V  K  D  A  S  R  I  P  I  V  D  V  V  D  S  R  D  I  I  T  N  S  K  V  L  Q  :  N  F  D  L  V  T  M  K  L  E  E  M  D  F  T  G  M  V  E  L  E  L  K  G  E  T  S  A  N  G  S  T  G  S  K  P  V  T  N  W  C  Y  G  V  V  V  W  F  E  T  G  F  T  E  R  F  C  K  E  K  P  T  N  L  S  T  S  P  H  T  T  S  T  H  W  S  Q  T  I  L  T  F </second_frame>
            <third_frame>   T  *  *  V  I  R :   *  E  L  M  L  I  G  K  P  F  W  R  I  L  L  S  *  K  A  L  *  S  W  M  *  V  V  V  L  A  Y  *   : V  S  L  Q  P  K  Q  V  R  Q  G  *  L  Q  L  K  Q  V  K  R  W  Q  L  W  Q  L  R :   L  L  K  T  I  T  F  C  G  L  E  A  R  M  K  V  L  I  K  A  M  V  *  W  K  W  F  K  E  W  L  K  S  *  R  V  P  R  K  F  S  H  T  V  L  M  C  *  *  V  N  G  W  V  I  A  C  F  M  S  Q  C  S  A  L  S  C  M  H  V  I  N  F  *  S  L  E  V  P  F  F  L  T  W  Q  Q  C :   L  L  L  G  L  E  E  A  V  Q  A  F  H  F  G  K  M  F  M  A  L  I  C  L  V  S  A  R  K  S  L  K  M  L  P  E  F  Q  *  L  M  L  L  T  V  V  I  *  *  P  I  Q  K  F  S  R :   T  L  I  W  *  L  *  S  W  R  R  W  I  L  Q  E  W  L  N  W  S  *  R  E  K  L  L  Q  T  G  L  Q  V  Q  N  L  *  Q  T  G  V  M  E  L  S  F  G  L  K  L  D  L  Q  K  D  S  V  K  K  S  Q  L  T  C  P  H  L  P  I  L  P  A  L  T  G  R  R  L  S  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13224" stop="13207"/>
                    <exon start="12399" stop="12302"/>
                    <exon start="11067" stop="10989"/>
                    <exon start="10863" stop="10603"/>
                    <exon start="10513" stop="10346"/>
                    <exon start="9802" stop="9557"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMISDKVRTDAYRQAILENPSLLKGAVVMDVGCGTGILSLFAAQAGASRVIAVEASEKMAAVAAKIAKDNNLLRIGSKNEGSDQGNGVMEVVQGMVEELKSAQKVQPHSVDVLVSEWMGYCLLYESMLSSVLYARDQFLKPGGAVLPDMATMFAAGFGRGGTSIPFWENVYGFNMSCIGEEIVKDASRIPIVDVVDSRDIITNSKVLQNFDLVTMKLEEMDFTGMVELELKGETSANGSTGSKPVTNWCYGVVVWFETGFTERFCKEKPTNLSTSPHTTSTHWSQTILTF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="14327" PGL_stop="13545"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14327" e_stop="14147"/>
            <exon e_start="13728" e_stop="13545"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.736" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14327" e_stop="14147" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="0.736" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14146" i_stop="13729" i_length="418"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13728" e_stop="13545" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14327" stop="14147"/>
              <exon start="13728" stop="13545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598626" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAGAGGAGGCTATGAGCTCAAAATTACTCTGTTTGTTCTGCGACTCTACTTACGATTCCAGTAACGCGCTCTTTGAGCACTGTGCATCCGAACATCGGTTCCATTTCAACACTCTCAAGAACTCGCTTGCCTTGGATTTTTATGGCTGCTTTAAGCTAATTAATTATGTTAGGTCTAAG : GTTGCTGGGAACAAATGCTGGAGTTGTGGCATTGTATGTCGGTCAAAGGAAGATTTACTGAATCACTTGCACGAAGTTGCTAGTTTTGATAATGGCAAGCTTCCTTGGAATGATGATGAGTTTCTGAAGCCTTTCTTGAATGAGGATGCACTTTTGTATAGCTTTGATGAAGACGATGAAGGTG</gDNA_template>
            <first_frame> *  R  G  G  Y  E  L  K  I  T  L  F  V  L  R  L  Y  L  R  F  Q  *  R  A  L  *  A  L  C  I  R  T  S  V  P  F  Q  H  S  Q  E  L  A  C  L  G  F  L  W  L  L  *  A  N  *  L  C  *  V  *   : G  C  W  E  Q  M  L  E  L  W  H  C  M  S  V  K  G  R  F  T  E  S  L  A  R  S  C  *  F  *  *  W  Q  A  S  L  E  *  *  *  V  S  E  A  F  L  E  *  G  C  T  F  V  *  L  *  *  R  R  *  R   </first_frame>
            <second_frame>  E  E  E  A  M  S  S  K  L  L  C  L  F  C  D  S  T  Y  D  S  S  N  A  L  F  E  H  C  A  S  E  H  R  F  H  F  N  T  L  K  N  S  L  A  L  D  F  Y  G  C  F  K  L  I  N  Y  V  R  S  K  :  V  A  G  N  K  C  W  S  C  G  I  V  C  R  S  K  E  D  L  L  N  H  L  H  E  V  A  S  F  D  N  G  K  L  P  W  N  D  D  E  F  L  K  P  F  L  N  E  D  A  L  L  Y  S  F  D  E  D  D  E  G  </second_frame>
            <third_frame>   K  R  R  L  *  A  Q  N  Y  S  V  C  S  A  T  L  L  T  I  P  V  T  R  S  L  S  T  V  H  P  N  I  G  S  I  S  T  L  S  R  T  R  L  P  W  I  F  M  A  A  L  S  *  L  I  M  L  G  L  R :   L  L  G  T  N  A  G  V  V  A  L  Y  V  G  Q  R  K  I  Y  *  I  T  C  T  K  L  L  V  L  I  M  A  S  F  L  G  M  M  M  S  F  *  S  L  S  *  M  R  M  H  F  C  I  A  L  M  K  T  M  K  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14326" stop="14147"/>
                    <exon start="13728" stop="13546"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEEAMSSKLLCLFCDSTYDSSNALFEHCASEHRFHFNTLKNSLALDFYGCFKLINYVRSKVAGNKCWSCGIVCRSKEDLLNHLHEVASFDNGKLPWNDDEFLKPFLNEDALLYSFDEDDEG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="24363" PGL_stop="28048"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24363" e_stop="24486"/>
            <exon e_start="24867" e_stop="24941"/>
            <exon e_start="25107" e_stop="25187"/>
            <exon e_start="27240" e_stop="27425"/>
            <exon e_start="27523" e_stop="27678"/>
            <exon e_start="27965" e_stop="28048"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.898" acc_prob="0.998" e_score="0.968"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.867" acc_prob="0.502" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.824" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="24363" e_stop="24486" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.898" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24487" i_stop="24866" i_length="380"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24867" e_stop="24941" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24942" i_stop="25106" i_length="165"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25107" e_stop="25187" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.867" acc_prob="0.502">
            <gDNA_intron_boundary i_start="25188" i_stop="27239" i_length="2052"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27240" e_stop="27425" e_length="186"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27426" i_stop="27522" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27523" e_stop="27678" e_length="156"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.824">
            <gDNA_intron_boundary i_start="27679" i_stop="27964" i_length="286"/>
          </intron>
          <exon e_serial="6" e_score="0.976">
            <gDNA_exon_boundary e_start="27965" e_stop="28048" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24363" stop="24486"/>
              <exon start="24867" stop="24941"/>
              <exon start="25107" stop="25187"/>
              <exon start="27240" stop="27425"/>
              <exon start="27523" stop="27678"/>
              <exon start="27965" stop="28048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGCATTCTAGAGTTGAAATGGAGAAGGGATTCCAAGAGTTGACATTCTTGCAGTCTTTCTTGTTGCCAATTTCAAAATGGGCTGATAAGCAGTTGGGAGACTACCATCTTAATTATGCTGAG : GGGTTGATGATGATGGAAAACACTGTGGCAGTTGCTATGCTTGTTCGAAGACTTCTTCTAGAAGAACCTGAAACA : GCAATGGAGTCTGCAACAATATCAGATAAAGAGCAGATAGAGTTCTACGTGACATCTTCAATCAAGAATGCATTTACAAGG : ATAATACAAGATGTTGAGGCAATATCTCAAGCAACAAATGAGCATCCTTTAGCACTGCTTGCAGAACACACGAAGAAACTATTGCAAAGAGATAATACTATTTACATGCCTATCTTATCTCAACGGCATCAAAATGCTGCTGCTGTTTCTGCATCCACACTTCACAAGCTTTATGGTATCAAATTG : AGACCATTCCTTGATAATGCGGAACATCTGACCGAGGATACAATAGCTGTCTTTCCTGCTGCTTATAGTCTTGAGCATGATATAATGCAAGTTATCGTATCTTCTTGTGCTGATGGAACATCAGATGCTTATTGTAGAAAACTAAACTTGTTCAAG : ATTGAGACTGCGTCTGGGACATTGGTACTACGATGGGTGAATTCACAACTTGCAAGGATTTTGAATTGGGTTGACCGGGCTATT</gDNA_template>
            <first_frame> F  A  F  *  S  *  N  G  E  G  I  P  R  V  D  I  L  A  V  F  L  V  A  N  F  K  M  G  *  *  A  V  G  R  L  P  S  *  L  C  *   : G  V  D  D  D  G  K  H  C  G  S  C  Y  A  C  S  K  T  S  S  R  R  T  *  N   : S  N  G  V  C  N  N  I  R  *  R  A  D  R  V  L  R  D  I  F  N  Q  E  C  I  Y  K   : D  N  T  R  C  *  G  N  I  S  S  N  K  *  A  S  F  S  T  A  C  R  T  H  E  E  T  I  A  K  R  *  Y  Y  L  H  A  Y  L  I  S  T  A  S  K  C  C  C  C  F  C  I  H  T  S  Q  A  L  W  Y  Q  I   : E  T  I  P  *  *  C  G  T  S  D  R  G  Y  N  S  C  L  S  C  C  L  *  S  *  A  *  Y  N  A  S  Y  R  I  F  L  C  *  W  N  I  R  C  L  L  *  K  T  K  L  V  Q   : D  *  D  C  V  W  D  I  G  T  T  M  G  E  F  T  T  C  K  D  F  E  L  G  *  P  G  Y  </first_frame>
            <second_frame>  L  H  S  R  V  E  M  E  K  G  F  Q  E  L  T  F  L  Q  S  F  L  L  P  I  S  K  W  A  D  K  Q  L  G  D  Y  H  L  N  Y  A  E  :  G  L  M  M  M  E  N  T  V  A  V  A  M  L  V  R  R  L  L  L  E  E  P  E  T  :  A  M  E  S  A  T  I  S  D  K  E  Q  I  E  F  Y  V  T  S  S  I  K  N  A  F  T  R  :  I  I  Q  D  V  E  A  I  S  Q  A  T  N  E  H  P  L  A  L  L  A  E  H  T  K  K  L  L  Q  R  D  N  T  I  Y  M  P  I  L  S  Q  R  H  Q  N  A  A  A  V  S  A  S  T  L  H  K  L  Y  G  I  K  L  :  R  P  F  L  D  N  A  E  H  L  T  E  D  T  I  A  V  F  P  A  A  Y  S  L  E  H  D  I  M  Q  V  I  V  S  S  C  A  D  G  T  S  D  A  Y  C  R  K  L  N  L  F  K  :  I  E  T  A  S  G  T  L  V  L  R  W  V  N  S  Q  L  A  R  I  L  N  W  V  D  R  A  I </second_frame>
            <third_frame>   C  I  L  E  L  K  W  R  R  D  S  K  S  *  H  S  C  S  L  S  C  C  Q  F  Q  N  G  L  I  S  S  W  E  T  T  I  L  I  M  L  R :   G  *  *  *  W  K  T  L  W  Q  L  L  C  L  F  E  D  F  F  *  K  N  L  K  Q :   Q  W  S  L  Q  Q  Y  Q  I  K  S  R  *  S  S  T  *  H  L  Q  S  R  M  H  L  Q  G :   *  Y  K  M  L  R  Q  Y  L  K  Q  Q  M  S  I  L  *  H  C  L  Q  N  T  R  R  N  Y  C  K  E  I  I  L  F  T  C  L  S  Y  L  N  G  I  K  M  L  L  L  F  L  H  P  H  F  T  S  F  M  V  S  N  * :   D  H  S  L  I  M  R  N  I  *  P  R  I  Q  *  L  S  F  L  L  L  I  V  L  S  M  I  *  C  K  L  S  Y  L  L  V  L  M  E  H  Q  M  L  I  V  E  N  *  T  C  S  R :   L  R  L  R  L  G  H  W  Y  Y  D  G  *  I  H  N  L  Q  G  F  *  I  G  L  T  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24364" stop="24486"/>
                    <exon start="24867" stop="24941"/>
                    <exon start="25107" stop="25187"/>
                    <exon start="27240" stop="27425"/>
                    <exon start="27523" stop="27678"/>
                    <exon start="27965" stop="28048"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHSRVEMEKGFQELTFLQSFLLPISKWADKQLGDYHLNYAEGLMMMENTVAVAMLVRRLLLEEPETAMESATISDKEQIEFYVTSSIKNAFTRIIQDVEAISQATNEHPLALLAEHTKKLLQRDNTIYMPILSQRHQNAAAVSASTLHKLYGIKLRPFLDNAEHLTEDTIAVFPAAYSLEHDIMQVIVSSCADGTSDAYCRKLNLFKIETASGTLVLRWVNSQLARILNWVDRAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="34915" PGL_stop="36220"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34915" e_stop="34987"/>
            <exon e_start="35068" e_stop="35163"/>
            <exon e_start="35308" e_stop="35403"/>
            <exon e_start="35819" e_stop="36220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34915" e_stop="34987" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.977">
            <gDNA_intron_boundary i_start="34988" i_stop="35067" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35068" e_stop="35163" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.884" acc_prob="0.974">
            <gDNA_intron_boundary i_start="35164" i_stop="35307" i_length="144"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35308" e_stop="35403" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.942" acc_prob="0.956">
            <gDNA_intron_boundary i_start="35404" i_stop="35818" i_length="415"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="35819" e_stop="36220" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34915" stop="34987"/>
              <exon start="35068" stop="35163"/>
              <exon start="35308" stop="35403"/>
              <exon start="35819" stop="36220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571336" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATCAACTTTGTGATGTGATAATGGAGCCACTGCGGGATCGTGTTGTAACAGGACTGCTTCAAGCATCACTG : GATGGCCTAGTCAGAGTTATATTAGATGGAGGACCATCACGTGTATTCTCCCTGGGTGATGCTAAGCTATTGGAGGAGGATCTAGAGATCTTGAAG : GAATTCTTCATTTCGGGTGGGGATGGGCTTCCTCGTGGAGTAGTCGAAAATCAAGTTGCACGTGTTCGGCAGGTGATAAAGTTGCAAGGTTATGAG : ACTAGGGAAATAATAGAAGACCTGAGATCTGCTAGTGAGTTAGAAATGCAGGGCGGAAGGGGTAAATTAGGTGCTGATACCAAGACCCTTCTTAGGATCCTGTGTCATCGAGGAGAGTCAGAGGCCTCTCAGTTTGTCAAGAAGCAATTCAAAATCCCCAAATCTGGAGCTTAGTGTACTTGTTGTGCCATTGATGAGATTGTAACATAATACACTATCGAAACTTCATTTTTAAGGATCTCATTTGTCAATGAGACAGTCTGCTGCACAGATTTTTTTTCTTCTTCAGGGAATGTACTTAAAACGTAGTTTTTTGTTTACTAGTTATATGTATATGTTTAGTGTGCAGTCTTAAACCTATTTGGAAGGCATGTATACACAATTTCTGCTGTCATGGGAGAA</gDNA_template>
            <first_frame> *  S  T  L  *  C  D  N  G  A  T  A  G  S  C  C  N  R  T  A  S  S  I  T   : G  W  P  S  Q  S  Y  I  R  W  R  T  I  T  C  I  L  P  G  *  C  *  A  I  G  G  G  S  R  D  L  E   : G  I  L  H  F  G  W  G  W  A  S  S  W  S  S  R  K  S  S  C  T  C  S  A  G  D  K  V  A  R  L  *   : D  *  G  N  N  R  R  P  E  I  C  *  *  V  R  N  A  G  R  K  G  *  I  R  C  *  Y  Q  D  P  S  *  D  P  V  S  S  R  R  V  R  G  L  S  V  C  Q  E  A  I  Q  N  P  Q  I  W  S  L  V  Y  L  L  C  H  *  *  D  C  N  I  I  H  Y  R  N  F  I  F  K  D  L  I  C  Q  *  D  S  L  L  H  R  F  F  F  F  F  R  E  C  T  *  N  V  V  F  C  L  L  V  I  C  I  C  L  V  C  S  L  K  P  I  W  K  A  C  I  H  N  F  C  C  H  G  R  </first_frame>
            <second_frame>  N  Q  L  C  D  V  I  M  E  P  L  R  D  R  V  V  T  G  L  L  Q  A  S  L  :  D  G  L  V  R  V  I  L  D  G  G  P  S  R  V  F  S  L  G  D  A  K  L  L  E  E  D  L  E  I  L  K  :  E  F  F  I  S  G  G  D  G  L  P  R  G  V  V  E  N  Q  V  A  R  V  R  Q  V  I  K  L  Q  G  Y  E  :  T  R  E  I  I  E  D  L  R  S  A  S  E  L  E  M  Q  G  G  R  G  K  L  G  A  D  T  K  T  L  L  R  I  L  C  H  R  G  E  S  E  A  S  Q  F  V  K  K  Q  F  K  I  P  K  S  G  A  *  C  T  C  C  A  I  D  E  I  V  T  *  Y  T  I  E  T  S  F  L  R  I  S  F  V  N  E  T  V  C  C  T  D  F  F  S  S  S  G  N  V  L  K  T  *  F  F  V  Y  *  L  Y  V  Y  V  *  C  A  V  L  N  L  F  G  R  H  V  Y  T  I  S  A  V  M  G  E </second_frame>
            <third_frame>   I  N  F  V  M  *  *  W  S  H  C  G  I  V  L  *  Q  D  C  F  K  H  H  W :   M  A  *  S  E  L  Y  *  M  E  D  H  H  V  Y  S  P  W  V  M  L  S  Y  W  R  R  I  *  R  S  *  R :   N  S  S  F  R  V  G  M  G  F  L  V  E  *  S  K  I  K  L  H  V  F  G  R  *  *  S  C  K  V  M  R :   L  G  K  *  *  K  T  *  D  L  L  V  S  *  K  C  R  A  E  G  V  N  *  V  L  I  P  R  P  F  L  G  S  C  V  I  E  E  S  Q  R  P  L  S  L  S  R  S  N  S  K  S  P  N  L  E  L  S  V  L  V  V  P  L  M  R  L  *  H  N  T  L  S  K  L  H  F  *  G  S  H  L  S  M  R  Q  S  A  A  Q  I  F  F  L  L  Q  G  M  Y  L  K  R  S  F  L  F  T  S  Y  M  Y  M  F  S  V  Q  S  *  T  Y  L  E  G  M  Y  T  Q  F  L  L  S  W  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34916" stop="34987"/>
                    <exon start="35068" stop="35163"/>
                    <exon start="35308" stop="35403"/>
                    <exon start="35819" stop="35992"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQLCDVIMEPLRDRVVTGLLQASLDGLVRVILDGGPSRVFSLGDAKLLEEDLEILKEFFISGGDGLPRGVVENQVARVRQVIKLQGYETREIIEDLRSASELEMQGGRGKLGADTKTLLRILCHRGESEASQFVKKQFKIPKSGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="39713" PGL_stop="36607"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39713" e_stop="39511"/>
            <exon e_start="39397" e_stop="39300"/>
            <exon e_start="39176" e_stop="39077"/>
            <exon e_start="37992" e_stop="37810"/>
            <exon e_start="36928" e_stop="36607"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.808" e_score="0.995"/>
          <exon-intron don_prob="0.985" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="39713" e_stop="39511" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.808">
            <gDNA_intron_boundary i_start="39510" i_stop="39398" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39397" e_stop="39300" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.942">
            <gDNA_intron_boundary i_start="39299" i_stop="39177" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39176" e_stop="39077" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="39076" i_stop="37993" i_length="1084"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37992" e_stop="37810" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.906">
            <gDNA_intron_boundary i_start="37809" i_stop="36929" i_length="881"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36928" e_stop="36607" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39713" stop="39511"/>
              <exon start="39397" stop="39300"/>
              <exon start="39176" stop="39077"/>
              <exon start="37992" stop="37810"/>
              <exon start="36928" stop="36607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579722" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTTAAAAGTGGTACAAGTGTATTTGTGCTTATTTACTTGTACTTTCTCTACAAAATAAACCAGTAAAATCACCAGCACGTATGCGTTCTCTTCTTAGTTAGCTCAATATAGCAATTAACCGATCGCAATAGCAGAGGAACTCTCATGGCTCCTGTGGTACCCAGATCCGGAGACGCCATTTTCGCCAACGTCGAACGAGTG : AACGCAGAGCTTTTCACTCTAACGTATGGAGCAATCGTGCGCCAACTGCTGACTGATCTGGAGGAGGTTGATGAGGTCAATAAACAGCTCGATCAAAT : GGGTTATAATATAGGAATCAGGCTCATAGACGAGTTTCTGGCAAAGTCTAATGTTTCAAGGTGTGTTGATTTCAAGGAGACAGCTGAAGTCATTGCCAAG : GTCGGTCTCAAAATGTTCCTAGGAGTGACTGCAACAGTGACAAATTGGAATGTTGAGGGAACAACATGCAGTCTAATTTTGGAGGATAACCCCTTGGTAGACTTCGTTGAGCTCCCTGATACCTGTCAAGGCCTATATTATTGTAACATCTTAAGTGGAGTAGTCAGGGGAGCATTAGAAATG : GTGTCAATGAAAACAGAGGTCACGTGGCTTCGTGATATGCTCAGAGGGGATGACGCATTTGAGTTGCAACTGAAGCTTCTGAGGCAAGTTCCTGAGGAGTACCCTTACAAAGATGACGAGTAACATACCTCCTTTTTTATGCTTGCCATTTGGAGTTATACGACAATCTATAGCAAATGCACACACAGATCTCTGTCTATTATTGAGTATGTTTAAGTTCTGATATTGACAATTTTCTACTGATGATCTATGCTCTGTAATTTTGAGATCTGTCCTATCATTCATGGATTTAATAGGCATTGTCCTGCTTCTAAATGTCTCG</gDNA_template>
            <first_frame> A  L  K  V  V  Q  V  Y  L  C  L  F  T  C  T  F  S  T  K  *  T  S  K  I  T  S  T  Y  A  F  S  S  *  L  A  Q  Y  S  N  *  P  I  A  I  A  E  E  L  S  W  L  L  W  Y  P  D  P  E  T  P  F  S  P  T  S  N  E  * :   T  Q  S  F  S  L  *  R  M  E  Q  S  C  A  N  C  *  L  I  W  R  R  L  M  R  S  I  N  S  S  I  K   : W  V  I  I  *  E  S  G  S  *  T  S  F  W  Q  S  L  M  F  Q  G  V  L  I  S  R  R  Q  L  K  S  L  P  R :   S  V  S  K  C  S  *  E  *  L  Q  Q  *  Q  I  G  M  L  R  E  Q  H  A  V  *  F  W  R  I  T  P  W  *  T  S  L  S  S  L  I  P  V  K  A  Y  I  I  V  T  S  *  V  E  *  S  G  E  H  *  K  W :   C  Q  *  K  Q  R  S  R  G  F  V  I  C  S  E  G  M  T  H  L  S  C  N  *  S  F  *  G  K  F  L  R  S  T  L  T  K  M  T  S  N  I  P  P  F  L  C  L  P  F  G  V  I  R  Q  S  I  A  N  A  H  T  D  L  C  L  L  L  S  M  F  K  F  *  Y  *  Q  F  S  T  D  D  L  C  S  V  I  L  R  S  V  L  S  F  M  D  L  I  G  I  V  L  L  L  N  V  S </first_frame>
            <second_frame>  L  *  K  W  Y  K  C  I  C  A  Y  L  L  V  L  S  L  Q  N  K  P  V  K  S  P  A  R  M  R  S  L  L  S  *  L  N  I  A  I  N  R  S  Q  *  Q  R  N  S  H  G  S  C  G  T  Q  I  R  R  R  H  F  R  Q  R  R  T  S   : E  R  R  A  F  H  S  N  V  W  S  N  R  A  P  T  A  D  *  S  G  G  G  *  *  G  Q  *  T  A  R  S  N  :  G  L  *  Y  R  N  Q  A  H  R  R  V  S  G  K  V  *  C  F  K  V  C  *  F  Q  G  D  S  *  S  H  C  Q   : G  R  S  Q  N  V  P  R  S  D  C  N  S  D  K  L  E  C  *  G  N  N  M  Q  S  N  F  G  G  *  P  L  G  R  L  R  *  A  P  *  Y  L  S  R  P  I  L  L  *  H  L  K  W  S  S  Q  G  S  I  R  N   : G  V  N  E  N  R  G  H  V  A  S  *  Y  A  Q  R  G  *  R  I  *  V  A  T  E  A  S  E  A  S  S  *  G  V  P  L  Q  R  *  R  V  T  Y  L  L  F  Y  A  C  H  L  E  L  Y  D  N  L  *  Q  M  H  T  Q  I  S  V  Y  Y  *  V  C  L  S  S  D  I  D  N  F  L  L  M  I  Y  A  L  *  F  *  D  L  S  Y  H  S  W  I  *  *  A  L  S  C  F  *  M  S   </second_frame>
            <third_frame>   F  K  S  G  T  S  V  F  V  L  I  Y  L  Y  F  L  Y  K  I  N  Q  *  N  H  Q  H  V  C  V  L  F  L  V  S  S  I  *  Q  L  T  D  R  N  S  R  G  T  L  M  A  P  V  V  P  R  S  G  D  A  I  F  A  N  V  E  R  V  :  N  A  E  L  F  T  L  T  Y  G  A  I  V  R  Q  L  L  T  D  L  E  E  V  D  E  V  N  K  Q  L  D  Q  M :   G  Y  N  I  G  I  R  L  I  D  E  F  L  A  K  S  N  V  S  R  C  V  D  F  K  E  T  A  E  V  I  A  K  :  V  G  L  K  M  F  L  G  V  T  A  T  V  T  N  W  N  V  E  G  T  T  C  S  L  I  L  E  D  N  P  L  V  D  F  V  E  L  P  D  T  C  Q  G  L  Y  Y  C  N  I  L  S  G  V  V  R  G  A  L  E  M  :  V  S  M  K  T  E  V  T  W  L  R  D  M  L  R  G  D  D  A  F  E  L  Q  L  K  L  L  R  Q  V  P  E  E  Y  P  Y  K  D  D  E  *  H  T  S  F  F  M  L  A  I  W  S  Y  T  T  I  Y  S  K  C  T  H  R  S  L  S  I  I  E  Y  V  *  V  L  I  L  T  I  F  Y  *  *  S  M  L  C  N  F  E  I  C  P  I  I  H  G  F  N  R  H  C  P  A  S  K  C  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39600" stop="39511"/>
                    <exon start="39397" stop="39300"/>
                    <exon start="39176" stop="39077"/>
                    <exon start="37992" stop="37810"/>
                    <exon start="36928" stop="36806"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLTDRNSRGTLMAPVVPRSGDAIFANVERVNAELFTLTYGAIVRQLLTDLEEVDEVNKQLDQMGYNIGIRLIDEFLAKSNVSRCVDFKETAEVIAKVGLKMFLGVTATVTNWNVEGTTCSLILEDNPLVDFVELPDTCQGLYYCNILSGVVRGALEMVSMKTEVTWLRDMLRGDDAFELQLKLLRQVPEEYPYKDDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39616" e_stop="39511"/>
            <exon e_start="39397" e_stop="39300"/>
            <exon e_start="39176" e_stop="38436"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.808" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.942" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39616" e_stop="39511" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.808">
            <gDNA_intron_boundary i_start="39510" i_stop="39398" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39397" e_stop="39300" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.942">
            <gDNA_intron_boundary i_start="39299" i_stop="39177" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="39176" e_stop="38436" e_length="741"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39616" stop="39511"/>
              <exon start="39397" stop="39300"/>
              <exon start="39176" stop="38436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578715" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTAGCTCAATATAGCAATTAACCGATCGCAATAGCAGAGGAACTCTCATGGCTCCTGTGGTACCCAGATCCGGAGACGCCATTTTCGCCAACGTCGAACGAGTG : AACGCAGAGCTTTTCACTCTAACGTATGGAGCAATCGTGCGCCAACTGCTGACTGATCTGGAGGAGGTTGATGAGGTCAATAAACAGCTCGATCAAAT : GGGTTATAATATAGGAATCAGGCTCATAGACGAGTTTCTGGCAAAGTCTAATGTTTCAAGGTGTGTTGATTTCAAGGAGACAGCTGAAGTCATTGCCAAGGTCTCTATCTCATTTTTATTCTAAAGAATTATATGCTGTTTGAGCTATGATTCCTTGAGTTTATTCATCATGTGAAGTTTTTTCGGAGTTATTATTTCAATTGGCTTCACAGATCAATATCCTTGTTTTATTAGGTTTCACATATTAAAAATCTCCTGGTGTATTTTTAGCTGCTGTTTAATTGTCTGCCTCTATTAGTGATAAGAAAGTGTGTAGCTTTGCTGTGCGGAAAACTGTTTCGTCAAGCATCTAAGTCATTTCTATTTGGTTTCACTAGGATAATTCCTCTCACATGACATTTGCAGTTGAATTTGTCCCTAAAAATATATCTAGAGCTTTCCCTACTGGACCATGATATTTAGGTGTGCGATAGCAATGGCAATATGAATTCCAACAAACTCAAATTACATTGCATTAAAAATGTAATCTCAAACGAGCCCATAAGAGGATGACTTCAACTACAATTTTCTATTAAATTAGCTATAAAAGTTCAATTTGCTAATTTACTTTCATATTCAACATCTATAGTAGCATTACTTATGAACTATTTTTAGTTGCCAAGGGTGATTCTATCACCATCCTAGAATTTGACCTATAAATCAAGTATTGGAGAAAAAGGAGAAAGCAAGAGAGTAGAAGAG</gDNA_template>
            <first_frame> S  *  L  N  I  A  I  N  R  S  Q  *  Q  R  N  S  H  G  S  C  G  T  Q  I  R  R  R  H  F  R  Q  R  R  T  S   : E  R  R  A  F  H  S  N  V  W  S  N  R  A  P  T  A  D  *  S  G  G  G  *  *  G  Q  *  T  A  R  S  N  :  G  L  *  Y  R  N  Q  A  H  R  R  V  S  G  K  V  *  C  F  K  V  C  *  F  Q  G  D  S  *  S  H  C  Q  G  L  Y  L  I  F  I  L  K  N  Y  M  L  F  E  L  *  F  L  E  F  I  H  H  V  K  F  F  R  S  Y  Y  F  N  W  L  H  R  S  I  S  L  F  Y  *  V  S  H  I  K  N  L  L  V  Y  F  *  L  L  F  N  C  L  P  L  L  V  I  R  K  C  V  A  L  L  C  G  K  L  F  R  Q  A  S  K  S  F  L  F  G  F  T  R  I  I  P  L  T  *  H  L  Q  L  N  L  S  L  K  I  Y  L  E  L  S  L  L  D  H  D  I  *  V  C  D  S  N  G  N  M  N  S  N  K  L  K  L  H  C  I  K  N  V  I  S  N  E  P  I  R  G  *  L  Q  L  Q  F  S  I  K  L  A  I  K  V  Q  F  A  N  L  L  S  Y  S  T  S  I  V  A  L  L  M  N  Y  F  *  L  P  R  V  I  L  S  P  S  *  N  L  T  Y  K  S  S  I  G  E  K  G  E  S  K  R  V  E  E </first_frame>
            <second_frame>  V  S  S  I  *  Q  L  T  D  R  N  S  R  G  T  L  M  A  P  V  V  P  R  S  G  D  A  I  F  A  N  V  E  R  V  :  N  A  E  L  F  T  L  T  Y  G  A  I  V  R  Q  L  L  T  D  L  E  E  V  D  E  V  N  K  Q  L  D  Q  M :   G  Y  N  I  G  I  R  L  I  D  E  F  L  A  K  S  N  V  S  R  C  V  D  F  K  E  T  A  E  V  I  A  K  V  S  I  S  F  L  F  *  R  I  I  C  C  L  S  Y  D  S  L  S  L  F  I  M  *  S  F  F  G  V  I  I  S  I  G  F  T  D  Q  Y  P  C  F  I  R  F  H  I  L  K  I  S  W  C  I  F  S  C  C  L  I  V  C  L  Y  *  *  *  E  S  V  *  L  C  C  A  E  N  C  F  V  K  H  L  S  H  F  Y  L  V  S  L  G  *  F  L  S  H  D  I  C  S  *  I  C  P  *  K  Y  I  *  S  F  P  Y  W  T  M  I  F  R  C  A  I  A  M  A  I  *  I  P  T  N  S  N  Y  I  A  L  K  M  *  S  Q  T  S  P  *  E  D  D  F  N  Y  N  F  L  L  N  *  L  *  K  F  N  L  L  I  Y  F  H  I  Q  H  L  *  *  H  Y  L  *  T  I  F  S  C  Q  G  *  F  Y  H  H  P  R  I  *  P  I  N  Q  V  L  E  K  K  E  K  A  R  E  *  K   </second_frame>
            <third_frame>   L  A  Q  Y  S  N  *  P  I  A  I  A  E  E  L  S  W  L  L  W  Y  P  D  P  E  T  P  F  S  P  T  S  N  E  * :   T  Q  S  F  S  L  *  R  M  E  Q  S  C  A  N  C  *  L  I  W  R  R  L  M  R  S  I  N  S  S  I  K   : W  V  I  I  *  E  S  G  S  *  T  S  F  W  Q  S  L  M  F  Q  G  V  L  I  S  R  R  Q  L  K  S  L  P  R  S  L  S  H  F  Y  S  K  E  L  Y  A  V  *  A  M  I  P  *  V  Y  S  S  C  E  V  F  S  E  L  L  F  Q  L  A  S  Q  I  N  I  L  V  L  L  G  F  T  Y  *  K  S  P  G  V  F  L  A  A  V  *  L  S  A  S  I  S  D  K  K  V  C  S  F  A  V  R  K  T  V  S  S  S  I  *  V  I  S  I  W  F  H  *  D  N  S  S  H  M  T  F  A  V  E  F  V  P  K  N  I  S  R  A  F  P  T  G  P  *  Y  L  G  V  R  *  Q  W  Q  Y  E  F  Q  Q  T  Q  I  T  L  H  *  K  C  N  L  K  R  A  H  K  R  M  T  S  T  T  I  F  Y  *  I  S  Y  K  S  S  I  C  *  F  T  F  I  F  N  I  Y  S  S  I  T  Y  E  L  F  L  V  A  K  G  D  S  I  T  I  L  E  F  D  L  *  I  K  Y  W  R  K  R  R  K  Q  E  S  R  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39600" stop="39511"/>
                    <exon start="39397" stop="39300"/>
                    <exon start="39176" stop="39053"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLTDRNSRGTLMAPVVPRSGDAIFANVERVNAELFTLTYGAIVRQLLTDLEEVDEVNKQLDQMGYNIGIRLIDEFLAKSNVSRCVDFKETAEVIAKVSISFLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="44976" PGL_stop="39930"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44976" e_stop="44734"/>
            <exon e_start="44288" e_stop="44265"/>
            <exon e_start="44102" e_stop="44015"/>
            <exon e_start="42481" e_stop="42389"/>
            <exon e_start="40774" e_stop="40742"/>
            <exon e_start="40650" e_stop="40594"/>
            <exon e_start="40277" e_stop="39930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44976" e_stop="44734" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.941">
            <gDNA_intron_boundary i_start="44733" i_stop="44289" i_length="445"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44288" e_stop="44265" e_length="24"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.899">
            <gDNA_intron_boundary i_start="44264" i_stop="44103" i_length="162"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44102" e_stop="44015" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.864" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44014" i_stop="42482" i_length="1533"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42481" e_stop="42389" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42388" i_stop="40775" i_length="1614"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40774" e_stop="40742" e_length="33"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.877">
            <gDNA_intron_boundary i_start="40741" i_stop="40651" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="40650" e_stop="40594" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.930" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40593" i_stop="40278" i_length="316"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="40277" e_stop="39930" e_length="348"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44976" stop="44734"/>
              <exon start="44288" stop="44265"/>
              <exon start="44102" stop="44015"/>
              <exon start="42481" stop="42389"/>
              <exon start="40774" stop="40742"/>
              <exon start="40650" stop="40594"/>
              <exon start="40277" stop="39930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTTAAAGGAGAAAGCTCGCAATAGTAGCGCAGAGCAAATTCTCCGCTAGTCGCAGCTCTTTCTACTTCCAAAAATGGCGTCTGGCGGCGTGGGAGGAGGGGTGGTAGAATGGCACCTGAGGCCACAAGTACCAAAAAACCCAGTTGTATTTTTCGATGTAACAATCGGCAACATCCCTGCTGGTCGCATCAAGATGGAGCTTTTCGCCGATATTACTCCCAAAACTGCTGAGAATTTCAG : GCAACTGTGCACGGGAGAATTTAG : GAAAGCAGGAGTACCACAAGGCTTTAAGAATTGTCAGTTCCATAGGGTGATTAAGGACTTCATGATCCAAGGTGGTGATTTCCTAAAG : GGAGATGGCAGTGGATGTGTTTCCATATATGGAAGCAAGTTTGAGGATGAAAACTTTATTGCCAAGCACACTGGTCCTGGCCTTTTATCAATG : GCAAATAGCGGACCAAACACTAATGGATGTCAG : TTTTTTGTCTCATGTGCCAAATGTGAGTGGCTCGACAACAAGCATGTCGTTTTTGGG : CGTGTTCTTGGAGATGGTCTTTTAGTGGTCAGGAAGATTGAGAATGTGGCTGTTGGAGCAAACAACAAACCAAAGCTGGCATGTGTGATTGCTGAATGTGGAGAGATGTAACTAGTGAAAATAAATGTACACCTAGTGATTTGAAAACACCCATCTGTACCTGGTTATATTTTCTTGGCATAGTCTAGAGGACCTGTTGAGTTGATTTATCAGCTCTTTATCTATTTCATTTGACATTAATGATTAAACTTGTGAACTCCTCTTTCTCCAGAATTGTAGCAAACAAGAAAAATGTACTGGATACAAGTGTTTCCTGTGTCAAAGTACATTGCAAGATTTTTGATAAGA</gDNA_template>
            <first_frame> K  V  K  G  E  S  S  Q  *  *  R  R  A  N  S  P  L  V  A  A  L  S  T  S  K  N  G  V  W  R  R  G  R  R  G  G  R  M  A  P  E  A  T  S  T  K  K  P  S  C  I  F  R  C  N  N  R  Q  H  P  C  W  S  H  Q  D  G  A  F  R  R  Y  Y  S  Q  N  C  *  E  F  Q  :  A  T  V  H  G  R  I  *  :  E  S  R  S  T  T  R  L  *  E  L  S  V  P  *  G  D  *  G  L  H  D  P  R  W  *  F  P  K   : G  R  W  Q  W  M  C  F  H  I  W  K  Q  V  *  G  *  K  L  Y  C  Q  A  H  W  S  W  P  F  I  N   : G  K  *  R  T  K  H  *  W  M  S   : V  F  C  L  M  C  Q  M  *  V  A  R  Q  Q  A  C  R  F  W   : A  C  S  W  R  W  S  F  S  G  Q  E  D  *  E  C  G  C  W  S  K  Q  Q  T  K  A  G  M  C  D  C  *  M  W  R  D  V  T  S  E  N  K  C  T  P  S  D  L  K  T  P  I  C  T  W  L  Y  F  L  G  I  V  *  R  T  C  *  V  D  L  S  A  L  Y  L  F  H  L  T  L  M  I  K  L  V  N  S  S  F  S  R  I  V  A  N  K  K  N  V  L  D  T  S  V  S  C  V  K  V  H  C  K  I  F  D  K  </first_frame>
            <second_frame>  K  L  K  E  K  A  R  N  S  S  A  E  Q  I  L  R  *  S  Q  L  F  L  L  P  K  M  A  S  G  G  V  G  G  G  V  V  E  W  H  L  R  P  Q  V  P  K  N  P  V  V  F  F  D  V  T  I  G  N  I  P  A  G  R  I  K  M  E  L  F  A  D  I  T  P  K  T  A  E  N  F  R :   Q  L  C  T  G  E  F  R :   K  A  G  V  P  Q  G  F  K  N  C  Q  F  H  R  V  I  K  D  F  M  I  Q  G  G  D  F  L  K  :  G  D  G  S  G  C  V  S  I  Y  G  S  K  F  E  D  E  N  F  I  A  K  H  T  G  P  G  L  L  S  M  :  A  N  S  G  P  N  T  N  G  C  Q  :  F  F  V  S  C  A  K  C  E  W  L  D  N  K  H  V  V  F  G  :  R  V  L  G  D  G  L  L  V  V  R  K  I  E  N  V  A  V  G  A  N  N  K  P  K  L  A  C  V  I  A  E  C  G  E  M  *  L  V  K  I  N  V  H  L  V  I  *  K  H  P  S  V  P  G  Y  I  F  L  A  *  S  R  G  P  V  E  L  I  Y  Q  L  F  I  Y  F  I  *  H  *  *  L  N  L  *  T  P  L  S  P  E  L  *  Q  T  R  K  M  Y  W  I  Q  V  F  P  V  S  K  Y  I  A  R  F  L  I  R </second_frame>
            <third_frame>   S  *  R  R  K  L  A  I  V  A  Q  S  K  F  S  A  S  R  S  S  F  Y  F  Q  K  W  R  L  A  A  W  E  E  G  W  *  N  G  T  *  G  H  K  Y  Q  K  T  Q  L  Y  F  S  M  *  Q  S  A  T  S  L  L  V  A  S  R  W  S  F  S  P  I  L  L  P  K  L  L  R  I  S   : G  N  C  A  R  E  N  L   : G  K  Q  E  Y  H  K  A  L  R  I  V  S  S  I  G  *  L  R  T  S  *  S  K  V  V  I  S  *  R :   E  M  A  V  D  V  F  P  Y  M  E  A  S  L  R  M  K  T  L  L  P  S  T  L  V  L  A  F  Y  Q  W :   Q  I  A  D  Q  T  L  M  D  V  S :   F  L  S  H  V  P  N  V  S  G  S  T  T  S  M  S  F  L  G :   V  F  L  E  M  V  F  *  W  S  G  R  L  R  M  W  L  L  E  Q  T  T  N  Q  S  W  H  V  *  L  L  N  V  E  R  C  N  *  *  K  *  M  Y  T  *  *  F  E  N  T  H  L  Y  L  V  I  F  S  W  H  S  L  E  D  L  L  S  *  F  I  S  S  L  S  I  S  F  D  I  N  D  *  T  C  E  L  L  F  L  Q  N  C  S  K  Q  E  K  C  T  G  Y  K  C  F  L  C  Q  S  T  L  Q  D  F  *  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44924" stop="44734"/>
                    <exon start="44288" stop="44265"/>
                    <exon start="44102" stop="44015"/>
                    <exon start="42481" stop="42389"/>
                    <exon start="40774" stop="40742"/>
                    <exon start="40650" stop="40594"/>
                    <exon start="40277" stop="40167"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQLFLLPKMASGGVGGGVVEWHLRPQVPKNPVVFFDVTIGNIPAGRIKMELFADITPKTAENFRQLCTGEFRKAGVPQGFKNCQFHRVIKDFMIQGGDFLKGDGSGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFVSCAKCEWLDNKHVVFGRVLGDGLLVVRKIENVAVGANNKPKLACVIAECGEM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="48365" PGL_stop="49176"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48365" e_stop="49176"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="48365" e_stop="49176" e_length="812"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48365" stop="49176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTAACTACTTTCTAGTTGAATTCTAAGGTTCTAGCAATCAAGTTAGTTGTCGATAAACTAATTTGAGATTGAAGCGTAGTTATGATAATGAATAACAAGAAACAAAAGAGAAAAGACGGTTATAAATCGAAGAAGTCAAATTTCAAAGTTGTGTACATTTCTACTCCGATGAAAGTTAAGACAAGTGCCTCGAGATTTAGGTCACTTGTGCAGGAACTAACGGGACGGGACTCGGATATAGCGAGAATTATGGAGACTAATGGGTCGATAACGGAGTATGAAGATATTCACAGTGAACGGGATGACTTTAATGAACTTCCAGTAAAATCGTCATCACCATCATCATCGTCTTTGCTAGCAAAATCATCTAATTCAACTCCTATGAGTTCAGAATCTGATAATTATTTTATCGAGCCTAATTTTGATGATTTATTTAATAGCCAAATGCAAGAGCAATTCCTTGCTTTTTTAGCTTCATCAAACTATAATTTGCCACCTAGAAGTGGTGATTATTTAGCTGAGATTGATGTTCTCGGAAGCTATGATGCACTACTTTAGATTTATTTTATTTTTGGATAATTAGTTCGGTGGGTAGATATGATCGACTTAATTAGTAGATATATGTATGTATATATGTATTTTTTTTAATACTAAGTGGATATTATTTAGATGGTGTACTGTATCATCATTATAACATATATATAGATTTGGAAAACCTTCGTTATGAAGAGAAAAAAAAGAGTATGAGTTATAAATATTTATTATTAGTAGAAAGATTTATAAAAATATTTCTCCGGTTATTTACGGATA</gDNA_template>
            <first_frame> Y  *  L  L  S  S  *  I  L  R  F  *  Q  S  S  *  L  S  I  N  *  F  E  I  E  A  *  L  *  *  *  I  T  R  N  K  R  E  K  T  V  I  N  R  R  S  Q  I  S  K  L  C  T  F  L  L  R  *  K  L  R  Q  V  P  R  D  L  G  H  L  C  R  N  *  R  D  G  T  R  I  *  R  E  L  W  R  L  M  G  R  *  R  S  M  K  I  F  T  V  N  G  M  T  L  M  N  F  Q  *  N  R  H  H  H  H  H  R  L  C  *  Q  N  H  L  I  Q  L  L  *  V  Q  N  L  I  I  I  L  S  S  L  I  L  M  I  Y  L  I  A  K  C  K  S  N  S  L  L  F  *  L  H  Q  T  I  I  C  H  L  E  V  V  I  I  *  L  R  L  M  F  S  E  A  M  M  H  Y  F  R  F  I  L  F  L  D  N  *  F  G  G  *  I  *  S  T  *  L  V  D  I  C  M  Y  I  C  I  F  F  N  T  K  W  I  L  F  R  W  C  T  V  S  S  L  *  H  I  Y  R  F  G  K  P  S  L  *  R  E  K  K  E  Y  E  L  *  I  F  I  I  S  R  K  I  Y  K  N  I  S  P  V  I  Y  G   </first_frame>
            <second_frame>  I  N  Y  F  L  V  E  F  *  G  S  S  N  Q  V  S  C  R  *  T  N  L  R  L  K  R  S  Y  D  N  E  *  Q  E  T  K  E  K  R  R  L  *  I  E  E  V  K  F  Q  S  C  V  H  F  Y  S  D  E  S  *  D  K  C  L  E  I  *  V  T  C  A  G  T  N  G  T  G  L  G  Y  S  E  N  Y  G  D  *  W  V  D  N  G  V  *  R  Y  S  Q  *  T  G  *  L  *  *  T  S  S  K  I  V  I  T  I  I  I  V  F  A  S  K  I  I  *  F  N  S  Y  E  F  R  I  *  *  L  F  Y  R  A  *  F  *  *  F  I  *  *  P  N  A  R  A  I  P  C  F  F  S  F  I  K  L  *  F  A  T  *  K  W  *  L  F  S  *  D  *  C  S  R  K  L  *  C  T  T  L  D  L  F  Y  F  W  I  I  S  S  V  G  R  Y  D  R  L  N  *  *  I  Y  V  C  I  Y  V  F  F  L  I  L  S  G  Y  Y  L  D  G  V  L  Y  H  H  Y  N  I  Y  I  D  L  E  N  L  R  Y  E  E  K  K  K  S  M  S  Y  K  Y  L  L  L  V  E  R  F  I  K  I  F  L  R  L  F  T  D  </second_frame>
            <third_frame>   L  T  T  F  *  L  N  S  K  V  L  A  I  K  L  V  V  D  K  L  I  *  D  *  S  V  V  M  I  M  N  N  K  K  Q  K  R  K  D  G  Y  K  S  K  K  S  N  F  K  V  V  Y  I  S  T  P  M  K  V  K  T  S  A  S  R  F  R  S  L  V  Q  E  L  T  G  R  D  S  D  I  A  R  I  M  E  T  N  G  S  I  T  E  Y  E  D  I  H  S  E  R  D  D  F  N  E  L  P  V  K  S  S  S  P  S  S  S  S  L  L  A  K  S  S  N  S  T  P  M  S  S  E  S  D  N  Y  F  I  E  P  N  F  D  D  L  F  N  S  Q  M  Q  E  Q  F  L  A  F  L  A  S  S  N  Y  N  L  P  P  R  S  G  D  Y  L  A  E  I  D  V  L  G  S  Y  D  A  L  L  *  I  Y  F  I  F  G  *  L  V  R  W  V  D  M  I  D  L  I  S  R  Y  M  Y  V  Y  M  Y  F  F  *  Y  *  V  D  I  I  *  M  V  Y  C  I  I  I  I  T  Y  I  *  I  W  K  T  F  V  M  K  R  K  K  R  V  *  V  I  N  I  Y  Y  *  *  K  D  L  *  K  Y  F  S  G  Y  L  R  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48439" stop="48924"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVVMIMNNKKQKRKDGYKSKKSNFKVVYISTPMKVKTSASRFRSLVQELTGRDSDIARIMETNGSITEYEDIHSERDDFNELPVKSSSPSSSSLLAKSSNSTPMSSESDNYFIEPNFDDLFNSQMQEQFLAFLASSNYNLPPRSGDYLAEIDVLGSYDALL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48984" stop="49175"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYVCIYVFFLILSGYYLDGVLYHHYNIYIDLENLRYEEKKKSMSYKYLLLVERFIKIFLRLFTD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="53638" PGL_stop="55143"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53638" e_stop="53899"/>
            <exon e_start="54301" e_stop="54850"/>
            <exon e_start="54943" e_stop="55143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.619" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53638" e_stop="53899" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="53900" i_stop="54300" i_length="401"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54301" e_stop="54850" e_length="550"/>
          </exon>
          <intron i_serial="2" don_prob="0.619" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54851" i_stop="54942" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="54943" e_stop="55143" e_length="201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53638" stop="53899"/>
              <exon start="54301" stop="54850"/>
              <exon start="54943" stop="55143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565840" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTCATGTTTGGTAGATGAGAGAAAGTGGACGGAAAAAGCGATTTCTCATTTCTCTGTGTTTTCCTTTCTCTACCATATGTGAAGTATATCGGGTCATTTCTCTTCTCCGCTCATCGGCTCCCCCGTGAACTGCCGTCGTGCCAACTTCAGGACGCATTTGTTTCCGATGAGATTTTCACTGCAAACATCAATTAAGGATTTCGATTTTCATCAGAGCACACGAGAACCGTAGATTTTGACCTCAAAAACCCTAGCAATCAG : GTTTGGTGTTTCTGCTGGATGTGAATTTTAGGCCTTGAATTAGCTATTTTCTGGATCTTGATACATTAGCACTATAGCTACCCGTTATTGTTCAGTTGTATTCTCTCTCTTTTGCTCAGCCGGCAGAAATATGCAGAAGAGTGGGAATCTTGTTAAAAATAATTCTTTGAAAATTACAACTCAGCAGTCTCTTCGACGTCTTGGTTTATGTTCCCAGATTACATCTGGGCAGCATTCATCTCCGGTTGTTTTCCCTGAAAAACGAAGCAAAGGAAGGAGTCTGACACGTGGAGAACTTAGTCTGAGTAATAATGATTCTAAGAAAGAGAAAAATGAGGAGCATAGGATTGACATTGGGGATGAGCAGTCTGACCTGCTTGGATATGAAGTATTTTCTGGAAAGCTGGTTTTGGACAAGGGAAAGACATATAAAAATTCGGAGTTAGAAGCCTCAAAGGAGGTTACTAGCCAGGATGCTGTTGAAGCCAAACTTACGAGCAAGGCTATGGTTTGGGGTTCTAGTATGCTGCATCTAGAAGATGTTATTTCG : GTATCACACTGTCCTGGACTCCGGCATTTCACCATCCATTCATATCCTCTGAGAAGAGGTTCCGGTGCTCTTTCTTGTTTTTTAAAATCTCGAAGAAGTCAGAAGGACTTCCGCTTCTTAGCTTCTTCATCCGAGGAAGCACTTCAATGGGTAAATGCATTTGCAGATCAACACTGTTATGTGAATTTACTGCCTCATCCT</gDNA_template>
            <first_frame> A  H  V  W  *  M  R  E  S  G  R  K  K  R  F  L  I  S  L  C  F  P  F  S  T  I  C  E  V  Y  R  V  I  S  L  L  R  S  S  A  P  P  *  T  A  V  V  P  T  S  G  R  I  C  F  R  *  D  F  H  C  K  H  Q  L  R  I  S  I  F  I  R  A  H  E  N  R  R  F  *  P  Q  K  P  *  Q  S   : G  L  V  F  L  L  D  V  N  F  R  P  *  I  S  Y  F  L  D  L  D  T  L  A  L  *  L  P  V  I  V  Q  L  Y  S  L  S  F  A  Q  P  A  E  I  C  R  R  V  G  I  L  L  K  I  I  L  *  K  L  Q  L  S  S  L  F  D  V  L  V  Y  V  P  R  L  H  L  G  S  I  H  L  R  L  F  S  L  K  N  E  A  K  E  G  V  *  H  V  E  N  L  V  *  V  I  M  I  L  R  K  R  K  M  R  S  I  G  L  T  L  G  M  S  S  L  T  C  L  D  M  K  Y  F  L  E  S  W  F  W  T  R  E  R  H  I  K  I  R  S  *  K  P  Q  R  R  L  L  A  R  M  L  L  K  P  N  L  R  A  R  L  W  F  G  V  L  V  C  C  I  *  K  M  L  F  R :   Y  H  T  V  L  D  S  G  I  S  P  S  I  H  I  L  *  E  E  V  P  V  L  F  L  V  F  *  N  L  E  E  V  R  R  T  S  A  S  *  L  L  H  P  R  K  H  F  N  G  *  M  H  L  Q  I  N  T  V  M  *  I  Y  C  L  I   </first_frame>
            <second_frame>  L  M  F  G  R  *  E  K  V  D  G  K  S  D  F  S  F  L  C  V  F  L  S  L  P  Y  V  K  Y  I  G  S  F  L  F  S  A  H  R  L  P  R  E  L  P  S  C  Q  L  Q  D  A  F  V  S  D  E  I  F  T  A  N  I  N  *  G  F  R  F  S  S  E  H  T  R  T  V  D  F  D  L  K  N  P  S  N  Q  :  V  W  C  F  C  W  M  *  I  L  G  L  E  L  A  I  F  W  I  L  I  H  *  H  Y  S  Y  P  L  L  F  S  C  I  L  S  L  L  L  S  R  Q  K  Y  A  E  E  W  E  S  C  *  K  *  F  F  E  N  Y  N  S  A  V  S  S  T  S  W  F  M  F  P  D  Y  I  W  A  A  F  I  S  G  C  F  P  *  K  T  K  Q  R  K  E  S  D  T  W  R  T  *  S  E  *  *  *  F  *  E  R  E  K  *  G  A  *  D  *  H  W  G  *  A  V  *  P  A  W  I  *  S  I  F  W  K  A  G  F  G  Q  G  K  D  I  *  K  F  G  V  R  S  L  K  G  G  Y  *  P  G  C  C  *  S  Q  T  Y  E  Q  G  Y  G  L  G  F  *  Y  A  A  S  R  R  C  Y  F   : G  I  T  L  S  W  T  P  A  F  H  H  P  F  I  S  S  E  K  R  F  R  C  S  F  L  F  F  K  I  S  K  K  S  E  G  L  P  L  L  S  F  F  I  R  G  S  T  S  M  G  K  C  I  C  R  S  T  L  L  C  E  F  T  A  S  S  </second_frame>
            <third_frame>   S  C  L  V  D  E  R  K  W  T  E  K  A  I  S  H  F  S  V  F  S  F  L  Y  H  M  *  S  I  S  G  H  F  S  S  P  L  I  G  S  P  V  N  C  R  R  A  N  F  R  T  H  L  F  P  M  R  F  S  L  Q  T  S  I  K  D  F  D  F  H  Q  S  T  R  E  P  *  I  L  T  S  K  T  L  A  I  R :   F  G  V  S  A  G  C  E  F  *  A  L  N  *  L  F  S  G  S  *  Y  I  S  T  I  A  T  R  Y  C  S  V  V  F  S  L  F  C  S  A  G  R  N  M  Q  K  S  G  N  L  V  K  N  N  S  L  K  I  T  T  Q  Q  S  L  R  R  L  G  L  C  S  Q  I  T  S  G  Q  H  S  S  P  V  V  F  P  E  K  R  S  K  G  R  S  L  T  R  G  E  L  S  L  S  N  N  D  S  K  K  E  K  N  E  E  H  R  I  D  I  G  D  E  Q  S  D  L  L  G  Y  E  V  F  S  G  K  L  V  L  D  K  G  K  T  Y  K  N  S  E  L  E  A  S  K  E  V  T  S  Q  D  A  V  E  A  K  L  T  S  K  A  M  V  W  G  S  S  M  L  H  L  E  D  V  I  S  :  V  S  H  C  P  G  L  R  H  F  T  I  H  S  Y  P  L  R  R  G  S  G  A  L  S  C  F  L  K  S  R  R  S  Q  K  D  F  R  F  L  A  S  S  S  E  E  A  L  Q  W  V  N  A  F  A  D  Q  H  C  Y  V  N  L  L  P  H  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54362" stop="54850"/>
                    <exon start="54943" stop="55143"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YISTIATRYCSVVFSLFCSAGRNMQKSGNLVKNNSLKITTQQSLRRLGLCSQITSGQHSSPVVFPEKRSKGRSLTRGELSLSNNDSKKEKNEEHRIDIGDEQSDLLGYEVFSGKLVLDKGKTYKNSELEASKEVTSQDAVEAKLTSKAMVWGSSMLHLEDVISVSHCPGLRHFTIHSYPLRRGSGALSCFLKSRRSQKDFRFLASSSEEALQWVNAFADQHCYVNLLPHP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="55280" PGL_stop="61773"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55280" e_stop="55311"/>
            <exon e_start="56574" e_stop="56667"/>
            <exon e_start="56767" e_stop="56804"/>
            <exon e_start="58132" e_stop="58278"/>
            <exon e_start="59800" e_stop="59899"/>
            <exon e_start="61456" e_stop="61773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55280" e_stop="55311" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="55312" i_stop="56573" i_length="1262"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56574" e_stop="56667" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56668" i_stop="56766" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56767" e_stop="56804" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.975">
            <gDNA_intron_boundary i_start="56805" i_stop="58131" i_length="1327"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58132" e_stop="58278" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58279" i_stop="59799" i_length="1521"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59800" e_stop="59899" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="0.992">
            <gDNA_intron_boundary i_start="59900" i_stop="61455" i_length="1556"/>
          </intron>
          <exon e_serial="6" e_score="0.972">
            <gDNA_exon_boundary e_start="61456" e_stop="61773" e_length="318"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55280" stop="55311"/>
              <exon start="56574" stop="56667"/>
              <exon start="56767" stop="56804"/>
              <exon start="58132" stop="58278"/>
              <exon start="59800" stop="59899"/>
              <exon start="61456" stop="61632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59800" stop="59899"/>
              <exon start="61456" stop="61773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589775" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTCCATCGCAAGGTTGAACCTATATTCAAG : CTTGCTGGGTTTAAGTTGGAAGTAGTCAAAACCACATCTGCAGGTCATGCTAGGAAACTTGCAAGCACAGTAGACTTCAGCACATGTCCTGATG : GTATTATATGTGTTGGAGGTGATGGAATAGTGAATGAG : GTTTTAAACGGGTTACTCACTAGGGATAACCAGAAAGAAGCAATTTCGGTTCCAATTGGAATCATTCCTGCTGGTTCTGATAATTCTTTGGTCTGGACCGTGCTTGGAGTTAGAGATCCAGTGTCAGCTGCAATAGCGATTGTCAAG : GGAGGGCTTACACCTACCGATGTTTTTGCTGTTGAATGGGTTCAAAGTGGTAGAATTCACTTTGGATCGACTGTCACCTACTTTGGCTTTGTGAGCGATG : TGCTGGAACTATCTGAGAAATACCAGAAGCGGTTTGGTCCATTGCGCTACTTTGTCGCTGGGTTCCTCAAATTCATGTGCTTACCAAAGTACAATTTTGAAGTGGAGTATCTTCCAGCACTGAAAGAAGCAACTGGAGAAGGAAAAGCTTCAGTCATTGATATGTCTGAACTGTATACAGACATTATGAGAAGGTCAAGCAAGGAAGGGCTTCCCAGAGCCTCAAGCTTATCAAGTATTGATTCAATAATGACCCCAAGCAGAATGTCTGGAGCAGACTTGGATACTACATGTAGTAGCACTGAGCCATCAGAATATG</gDNA_template>
            <first_frame> Y  S  I  A  R  L  N  L  Y  S  S :   L  L  G  L  S  W  K  *  S  K  P  H  L  Q  V  M  L  G  N  L  Q  A  Q  *  T  S  A  H  V  L  M  :  V  L  Y  V  L  E  V  M  E  *  *  M  R :   F  *  T  G  Y  S  L  G  I  T  R  K  K  Q  F  R  F  Q  L  E  S  F  L  L  V  L  I  I  L  W  S  G  P  C  L  E  L  E  I  Q  C  Q  L  Q  *  R  L  S  R :   E  G  L  H  L  P  M  F  L  L  L  N  G  F  K  V  V  E  F  T  L  D  R  L  S  P  T  L  A  L  *  A  M  :  C  W  N  Y  L  R  N  T  R  S  G  L  V  H  C  A  T  L  S  L  G  S  S  N  S  C  A  Y  Q  S  T  I  L  K  W  S  I  F  Q  H  *  K  K  Q  L  E  K  E  K  L  Q  S  L  I  C  L  N  C  I  Q  T  L  *  E  G  Q  A  R  K  G  F  P  E  P  Q  A  Y  Q  V  L  I  Q  *  *  P  Q  A  E  C  L  E  Q  T  W  I  L  H  V  V  A  L  S  H  Q  N  M </first_frame>
            <second_frame>  I  P  S  Q  G  *  T  Y  I  Q   : A  C  W  V  *  V  G  S  S  Q  N  H  I  C  R  S  C  *  E  T  C  K  H  S  R  L  Q  H  M  S  *  W :   Y  Y  M  C  W  R  *  W  N  S  E  *   : G  F  K  R  V  T  H  *  G  *  P  E  R  S  N  F  G  S  N  W  N  H  S  C  W  F  *  *  F  F  G  L  D  R  A  W  S  *  R  S  S  V  S  C  N  S  D  C  Q   : G  R  A  Y  T  Y  R  C  F  C  C  *  M  G  S  K  W  *  N  S  L  W  I  D  C  H  L  L  W  L  C  E  R  C :   A  G  T  I  *  E  I  P  E  A  V  W  S  I  A  L  L  C  R  W  V  P  Q  I  H  V  L  T  K  V  Q  F  *  S  G  V  S  S  S  T  E  R  S  N  W  R  R  K  S  F  S  H  *  Y  V  *  T  V  Y  R  H  Y  E  K  V  K  Q  G  R  A  S  Q  S  L  K  L  I  K  Y  *  F  N  N  D  P  K  Q  N  V  W  S  R  L  G  Y  Y  M  *  *  H  *  A  I  R  I   </second_frame>
            <third_frame>   F  H  R  K  V  E  P  I  F  K  :  L  A  G  F  K  L  E  V  V  K  T  T  S  A  G  H  A  R  K  L  A  S  T  V  D  F  S  T  C  P  D   : G  I  I  C  V  G  G  D  G  I  V  N  E  :  V  L  N  G  L  L  T  R  D  N  Q  K  E  A  I  S  V  P  I  G  I  I  P  A  G  S  D  N  S  L  V  W  T  V  L  G  V  R  D  P  V  S  A  A  I  A  I  V  K  :  G  G  L  T  P  T  D  V  F  A  V  E  W  V  Q  S  G  R  I  H  F  G  S  T  V  T  Y  F  G  F  V  S  D   : V  L  E  L  S  E  K  Y  Q  K  R  F  G  P  L  R  Y  F  V  A  G  F  L  K  F  M  C  L  P  K  Y  N  F  E  V  E  Y  L  P  A  L  K  E  A  T  G  E  G  K  A  S  V  I  D  M  S  E  L  Y  T  D  I  M  R  R  S  S  K  E  G  L  P  R  A  S  S  L  S  S  I  D  S  I  M  T  P  S  R  M  S  G  A  D  L  D  T  T  C  S  S  T  E  P  S  E  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55282" stop="55311"/>
                    <exon start="56574" stop="56667"/>
                    <exon start="56767" stop="56804"/>
                    <exon start="58132" stop="58278"/>
                    <exon start="59800" stop="59899"/>
                    <exon start="61456" stop="61772"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHRKVEPIFKLAGFKLEVVKTTSAGHARKLASTVDFSTCPDGIICVGGDGIVNEVLNGLLTRDNQKEAISVPIGIIPAGSDNSLVWTVLGVRDPVSAAIAIVKGGLTPTDVFAVEWVQSGRIHFGSTVTYFGFVSDVLELSEKYQKRFGPLRYFVAGFLKFMCLPKYNFEVEYLPALKEATGEGKASVIDMSELYTDIMRRSSKEGLPRASSLSSIDSIMTPSRMSGADLDTTCSSTEPSEY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="62148" PGL_stop="63111"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62148" e_stop="62384"/>
            <exon e_start="62676" e_stop="63111"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.692" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62148" e_stop="62384" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="0.692" acc_prob="0.984">
            <gDNA_intron_boundary i_start="62385" i_stop="62675" i_length="291"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62676" e_stop="63111" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62148" stop="62384"/>
              <exon start="62676" stop="63111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGCTGAAGAATGGGTGTCTACCAAAGGTCAATTTCTTGGTGTCCTGGTATGCAATCATTCATGCAAGACAGTTCAAAGCTTAAGTTCACAGGTTGTGGCCCCAAAAGCAGAACCTGATGACAACACGTTAGATCTGTTGTTGGTCCATGGAAGTGGAAGACTGAAGCTTATAAGGTTCTTCTTGCTTCTGCAAATGGGCCGACACCTTTCCCTCCCGTACGTTGAGTATGTCAAG : GTTAAGGCAGTAAAGGTTAAGCCTGGGAAGCACTCTAACAGTAGCTGTGGTATTGATGGTGAACTTTTCCCGGTAAATGAGCAAGTGATTTCGTCCTTGCTTCCAGAACAGTGCAGGCTTATTGGTCGCGCCCCAGGTAATTGCAAGTGATTGATGGAGCCCTTGTATATCTTCAATAGGTCTCTCTTCCTTCCGGCTGCAACATTCAGCTCTTTATTCGTCATTGAGGTCCTTGTAAATTTTGTCAATGTTGCTTTCATTTTTCAAAAATTATATGTCAGCTTATATCTTAACATGTATCCTCTGCCGTAACTTGTATTTTTTTTGCCTTTTGAGTTGGCTTGCTATGAATATTGGCCATGTCCCTTGTAATAGTTTGACAAAGTGTGTAAATTATTGTTTTTCGATCGTTGAGGAAAGAAATTTTTATTTATTC</gDNA_template>
            <first_frame> A  A  E  E  W  V  S  T  K  G  Q  F  L  G  V  L  V  C  N  H  S  C  K  T  V  Q  S  L  S  S  Q  V  V  A  P  K  A  E  P  D  D  N  T  L  D  L  L  L  V  H  G  S  G  R  L  K  L  I  R  F  F  L  L  L  Q  M  G  R  H  L  S  L  P  Y  V  E  Y  V  K  :  V  K  A  V  K  V  K  P  G  K  H  S  N  S  S  C  G  I  D  G  E  L  F  P  V  N  E  Q  V  I  S  S  L  L  P  E  Q  C  R  L  I  G  R  A  P  G  N  C  K  *  L  M  E  P  L  Y  I  F  N  R  S  L  F  L  P  A  A  T  F  S  S  L  F  V  I  E  V  L  V  N  F  V  N  V  A  F  I  F  Q  K  L  Y  V  S  L  Y  L  N  M  Y  P  L  P  *  L  V  F  F  L  P  F  E  L  A  C  Y  E  Y  W  P  C  P  L  *  *  F  D  K  V  C  K  L  L  F  F  D  R  *  G  K  K  F  L  F  I  </first_frame>
            <second_frame>  L  L  K  N  G  C  L  P  K  V  N  F  L  V  S  W  Y  A  I  I  H  A  R  Q  F  K  A  *  V  H  R  L  W  P  Q  K  Q  N  L  M  T  T  R  *  I  C  C  W  S  M  E  V  E  D  *  S  L  *  G  S  S  C  F  C  K  W  A  D  T  F  P  S  R  T  L  S  M  S  R :   L  R  Q  *  R  L  S  L  G  S  T  L  T  V  A  V  V  L  M  V  N  F  S  R  *  M  S  K  *  F  R  P  C  F  Q  N  S  A  G  L  L  V  A  P  Q  V  I  A  S  D  *  W  S  P  C  I  S  S  I  G  L  S  S  F  R  L  Q  H  S  A  L  Y  S  S  L  R  S  L  *  I  L  S  M  L  L  S  F  F  K  N  Y  M  S  A  Y  I  L  T  C  I  L  C  R  N  L  Y  F  F  C  L  L  S  W  L  A  M  N  I  G  H  V  P  C  N  S  L  T  K  C  V  N  Y  C  F  S  I  V  E  E  R  N  F  Y  L  F </second_frame>
            <third_frame>   C  *  R  M  G  V  Y  Q  R  S  I  S  W  C  P  G  M  Q  S  F  M  Q  D  S  S  K  L  K  F  T  G  C  G  P  K  S  R  T  *  *  Q  H  V  R  S  V  V  G  P  W  K  W  K  T  E  A  Y  K  V  L  L  A  S  A  N  G  P  T  P  F  P  P  V  R  *  V  C  Q   : G  *  G  S  K  G  *  A  W  E  A  L  *  Q  *  L  W  Y  *  W  *  T  F  P  G  K  *  A  S  D  F  V  L  A  S  R  T  V  Q  A  Y  W  S  R  P  R  *  L  Q  V  I  D  G  A  L  V  Y  L  Q  *  V  S  L  P  S  G  C  N  I  Q  L  F  I  R  H  *  G  P  C  K  F  C  Q  C  C  F  H  F  S  K  I  I  C  Q  L  I  S  *  H  V  S  S  A  V  T  C  I  F  F  A  F  *  V  G  L  L  *  I  L  A  M  S  L  V  I  V  *  Q  S  V  *  I  I  V  F  R  S  L  R  K  E  I  F  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62148" stop="62384"/>
                    <exon start="62676" stop="62825"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAEEWVSTKGQFLGVLVCNHSCKTVQSLSSQVVAPKAEPDDNTLDLLLVHGSGRLKLIRFFLLLQMGRHLSLPYVEYVKVKAVKVKPGKHSNSSCGIDGELFPVNEQVISSLLPEQCRLIGRAPGNCK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62914" stop="63111"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSMLLSFFKNYMSAYILTCILCRNLYFFCLLSWLAMNIGHVPCNSLTKCVNYCFSIVEERNFYLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="79430" PGL_stop="80265"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79430" e_stop="79735"/>
            <exon e_start="79885" e_stop="80265"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="0.993"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="79430" e_stop="79735" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="79736" i_stop="79884" i_length="149"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="79885" e_stop="80265" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79430" stop="79735"/>
              <exon start="79885" stop="80265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563302" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAGGTGACTGGGTAAGAGTAAAAGCTTCAGTTCCCTCACCCAAATATGGTTGGGAGGACATCACAAGGAATAGTGTAGGAATAATCCACAGTTTGGAAGAAGATGGTGATGTTGGCATTGCATTTTGCTTCCGTAGCAAGCCTTTCTCTTGTTCAGTGACAGATGTGGAGAAGGTGCCGCCTTTCGAAGTTGGACAGGAAATTCATGTTCTGCCATCTGTTTCTCAGCCTAGACTTGGATGGTCCAATGAGACACCAGCAACGGTTGGGAAGATTGCCAGAATCGACATGGATGGTGCTTTAAAT : GTTAGGGTTGCTGGGAGAGACAGTTTATGGAAGGTTTCTGCTGGAGATGCAGAAAGACTTTCAGGATTTGATGTAGGTGATTGGGTACGTTCAAAACCAAGCCTGGGAACTAGACCCAGTTATGATTGGTACAGCATAGGCAAAGAAAGTTTAGCAGTTGTACATAGTGTTCAAGACACTGGTTATTTAGAGCTTGCATGCTGTTTCCGCAAAGGTCGCCTAATGACTCATTACACTGACATTGAAAAGGTTTCTGGATTTCGAATTGGGCAGCATGTTAGGTTTAGGTCTGGTCTGGTAGAACCAAGATGGGGCTGGAGAGGCACTAATCCAGATTCTCGAGGTGTGATAACTGGCGTTAATGCTGATGGAGAAGTTAGG</gDNA_template>
            <first_frame> V  G  D  W  V  R  V  K  A  S  V  P  S  P  K  Y  G  W  E  D  I  T  R  N  S  V  G  I  I  H  S  L  E  E  D  G  D  V  G  I  A  F  C  F  R  S  K  P  F  S  C  S  V  T  D  V  E  K  V  P  P  F  E  V  G  Q  E  I  H  V  L  P  S  V  S  Q  P  R  L  G  W  S  N  E  T  P  A  T  V  G  K  I  A  R  I  D  M  D  G  A  L  N  :  V  R  V  A  G  R  D  S  L  W  K  V  S  A  G  D  A  E  R  L  S  G  F  D  V  G  D  W  V  R  S  K  P  S  L  G  T  R  P  S  Y  D  W  Y  S  I  G  K  E  S  L  A  V  V  H  S  V  Q  D  T  G  Y  L  E  L  A  C  C  F  R  K  G  R  L  M  T  H  Y  T  D  I  E  K  V  S  G  F  R  I  G  Q  H  V  R  F  R  S  G  L  V  E  P  R  W  G  W  R  G  T  N  P  D  S  R  G  V  I  T  G  V  N  A  D  G  E  V  R </first_frame>
            <second_frame>  *  V  T  G  *  E  *  K  L  Q  F  P  H  P  N  M  V  G  R  T  S  Q  G  I  V  *  E  *  S  T  V  W  K  K  M  V  M  L  A  L  H  F  A  S  V  A  S  L  S  L  V  Q  *  Q  M  W  R  R  C  R  L  S  K  L  D  R  K  F  M  F  C  H  L  F  L  S  L  D  L  D  G  P  M  R  H  Q  Q  R  L  G  R  L  P  E  S  T  W  M  V  L  *  M :   L  G  L  L  G  E  T  V  Y  G  R  F  L  L  E  M  Q  K  D  F  Q  D  L  M  *  V  I  G  Y  V  Q  N  Q  A  W  E  L  D  P  V  M  I  G  T  A  *  A  K  K  V  *  Q  L  Y  I  V  F  K  T  L  V  I  *  S  L  H  A  V  S  A  K  V  A  *  *  L  I  T  L  T  L  K  R  F  L  D  F  E  L  G  S  M  L  G  L  G  L  V  W  *  N  Q  D  G  A  G  E  A  L  I  Q  I  L  E  V  *  *  L  A  L  M  L  M  E  K  L   </second_frame>
            <third_frame>   R  *  L  G  K  S  K  S  F  S  S  L  T  Q  I  W  L  G  G  H  H  K  E  *  C  R  N  N  P  Q  F  G  R  R  W  *  C  W  H  C  I  L  L  P  *  Q  A  F  L  L  F  S  D  R  C  G  E  G  A  A  F  R  S  W  T  G  N  S  C  S  A  I  C  F  S  A  *  T  W  M  V  Q  *  D  T  S  N  G  W  E  D  C  Q  N  R  H  G  W  C  F  K   : C  *  G  C  W  E  R  Q  F  M  E  G  F  C  W  R  C  R  K  T  F  R  I  *  C  R  *  L  G  T  F  K  T  K  P  G  N  *  T  Q  L  *  L  V  Q  H  R  Q  R  K  F  S  S  C  T  *  C  S  R  H  W  L  F  R  A  C  M  L  F  P  Q  R  S  P  N  D  S  L  H  *  H  *  K  G  F  W  I  S  N  W  A  A  C  *  V  *  V  W  S  G  R  T  K  M  G  L  E  R  H  *  S  R  F  S  R  C  D  N  W  R  *  C  *  W  R  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79430" stop="79735"/>
                    <exon start="79885" stop="80265"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGDWVRVKASVPSPKYGWEDITRNSVGIIHSLEEDGDVGIAFCFRSKPFSCSVTDVEKVPPFEVGQEIHVLPSVSQPRLGWSNETPATVGKIARIDMDGALNVRVAGRDSLWKVSAGDAERLSGFDVGDWVRSKPSLGTRPSYDWYSIGKESLAVVHSVQDTGYLELACCFRKGRLMTHYTDIEKVSGFRIGQHVRFRSGLVEPRWGWRGTNPDSRGVITGVNADGEVR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="85255" PGL_stop="81762"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85255" e_stop="84942"/>
            <exon e_start="84433" e_stop="84311"/>
            <exon e_start="82533" e_stop="82453"/>
            <exon e_start="82219" e_stop="81762"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.780" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85255" e_stop="84942" e_length="314"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.988">
            <gDNA_intron_boundary i_start="84941" i_stop="84434" i_length="508"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84433" e_stop="84311" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="84310" i_stop="82534" i_length="1777"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82533" e_stop="82453" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.780">
            <gDNA_intron_boundary i_start="82452" i_stop="82220" i_length="233"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82219" e_stop="81762" e_length="458"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85255" stop="84942"/>
              <exon start="84433" stop="84311"/>
              <exon start="82533" stop="82453"/>
              <exon start="82219" stop="81762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584662" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTCGTTGGGAATTTTGGCTCTCTCTTTCTTTGCTCCTTAAACCCCAAACAGAGTCTCTCTCCCTGTGCTGTGTGTCACTCCGGCAGAGCAGATAAAGCTATAAGAATGCAAGCTGCCAGTCTCGCCTTTCACCCTCCGGCACTCCGTACTTCACCTTCTTACCTCTCCTCCAAACTTCCCCACCACCTCAATTATTCACTCTTCAAACACGCTCCTTCAACTTCCACACTATCTTTAACCCAAGTACTCTCCAGAAATACCATTTGCAAACCCCCAGCTGTTGGAAAATATGTCAGGGAGGATTATCTTGTG : AAGAAATTATCTGCCAAGGAGATTCAAGAACTGATAAAGGGAGAAAGGAATGTGCCACTGATTATTGATTTCTATGCCACATGGTGTGGTCCTTGTATTTTGATGGCGCAAGAACTTGAAATG : CTTGCTGTGGAGTATGAAAACAATGCACTTATTGTGAAAGTGGACACAGATGATGAATACGAATTTGCACGAGATATGCAG : GTTCGAGGACTACCTACGTTGTATTTCATAAGTCCAGATTCAAGTAAGGATGCTATCAGAACTGAAGGGCTCATCCCGATACAAATGATGCGGGACATCATTGATAATGATTTATGATGAATAATTCAGTTGGTTCTTTGTTAGTGGAATCCATTGCTCTTTGCTGTAGTTGTGAAGCTGCCTTTTATTAGTTCGTAGTGATGTACCAATATGTGGATCTCAACATAATTTTTTAGCAATTTCCTTCTGAAGCTCTCAGGCTTGGTATCTGCCAGGCAGTGGTAAGAGTTGTAACACAAATTTTGCACTTGGAAACAGTTAAAACAAGTAGTGCAACAAACTGCAATTTCTGATGTTAAAACAGAAATGGATGTTTAAAATCTTAGAATTCCTCCAGATTGAAATAGAGTGCCAAGTATTCTAAATGTTCTTAAGGTGGACGCTTGAGTTTTTTAATC</gDNA_template>
            <first_frame> V  S  L  G  I  L  A  L  S  F  F  A  P  *  T  P  N  R  V  S  L  P  V  L  C  V  T  P  A  E  Q  I  K  L  *  E  C  K  L  P  V  S  P  F  T  L  R  H  S  V  L  H  L  L  T  S  P  P  N  F  P  T  T  S  I  I  H  S  S  N  T  L  L  Q  L  P  H  Y  L  *  P  K  Y  S  P  E  I  P  F  A  N  P  Q  L  L  E  N  M  S  G  R  I  I  L  * :   R  N  Y  L  P  R  R  F  K  N  *  *  R  E  K  G  M  C  H  *  L  L  I  S  M  P  H  G  V  V  L  V  F  *  W  R  K  N  L  K  C :   L  L  W  S  M  K  T  M  H  L  L  *  K  W  T  Q  M  M  N  T  N  L  H  E  I  C  R :   F  E  D  Y  L  R  C  I  S  *  V  Q  I  Q  V  R  M  L  S  E  L  K  G  S  S  R  Y  K  *  C  G  T  S  L  I  M  I  Y  D  E  *  F  S  W  F  F  V  S  G  I  H  C  S  L  L  *  L  *  S  C  L  L  L  V  R  S  D  V  P  I  C  G  S  Q  H  N  F  L  A  I  S  F  *  S  S  Q  A  W  Y  L  P  G  S  G  K  S  C  N  T  N  F  A  L  G  N  S  *  N  K  *  C  N  K  L  Q  F  L  M  L  K  Q  K  W  M  F  K  I  L  E  F  L  Q  I  E  I  E  C  Q  V  F  *  M  F  L  R  W  T  L  E  F  F  N  </first_frame>
            <second_frame>  S  R  W  E  F  W  L  S  L  S  L  L  L  K  P  Q  T  E  S  L  S  L  C  C  V  S  L  R  Q  S  R  *  S  Y  K  N  A  S  C  Q  S  R  L  S  P  S  G  T  P  Y  F  T  F  L  P  L  L  Q  T  S  P  P  P  Q  L  F  T  L  Q  T  R  S  F  N  F  H  T  I  F  N  P  S  T  L  Q  K  Y  H  L  Q  T  P  S  C  W  K  I  C  Q  G  G  L  S  C   : E  E  I  I  C  Q  G  D  S  R  T  D  K  G  R  K  E  C  A  T  D  Y  *  F  L  C  H  M  V  W  S  L  Y  F  D  G  A  R  T  *  N   : A  C  C  G  V  *  K  Q  C  T  Y  C  E  S  G  H  R  *  *  I  R  I  C  T  R  Y  A   : G  S  R  T  T  Y  V  V  F  H  K  S  R  F  K  *  G  C  Y  Q  N  *  R  A  H  P  D  T  N  D  A  G  H  H  *  *  *  F  M  M  N  N  S  V  G  S  L  L  V  E  S  I  A  L  C  C  S  C  E  A  A  F  Y  *  F  V  V  M  Y  Q  Y  V  D  L  N  I  I  F  *  Q  F  P  S  E  A  L  R  L  G  I  C  Q  A  V  V  R  V  V  T  Q  I  L  H  L  E  T  V  K  T  S  S  A  T  N  C  N  F  *  C  *  N  R  N  G  C  L  K  S  *  N  S  S  R  L  K  *  S  A  K  Y  S  K  C  S  *  G  G  R  L  S  F  L  I </second_frame>
            <third_frame>   L  V  G  N  F  G  S  L  F  L  C  S  L  N  P  K  Q  S  L  S  P  C  A  V  C  H  S  G  R  A  D  K  A  I  R  M  Q  A  A  S  L  A  F  H  P  P  A  L  R  T  S  P  S  Y  L  S  S  K  L  P  H  H  L  N  Y  S  L  F  K  H  A  P  S  T  S  T  L  S  L  T  Q  V  L  S  R  N  T  I  C  K  P  P  A  V  G  K  Y  V  R  E  D  Y  L  V  :  K  K  L  S  A  K  E  I  Q  E  L  I  K  G  E  R  N  V  P  L  I  I  D  F  Y  A  T  W  C  G  P  C  I  L  M  A  Q  E  L  E  M  :  L  A  V  E  Y  E  N  N  A  L  I  V  K  V  D  T  D  D  E  Y  E  F  A  R  D  M  Q  :  V  R  G  L  P  T  L  Y  F  I  S  P  D  S  S  K  D  A  I  R  T  E  G  L  I  P  I  Q  M  M  R  D  I  I  D  N  D  L  *  *  I  I  Q  L  V  L  C  *  W  N  P  L  L  F  A  V  V  V  K  L  P  F  I  S  S  *  *  C  T  N  M  W  I  S  T  *  F  F  S  N  F  L  L  K  L  S  G  L  V  S  A  R  Q  W  *  E  L  *  H  K  F  C  T  W  K  Q  L  K  Q  V  V  Q  Q  T  A  I  S  D  V  K  T  E  M  D  V  *  N  L  R  I  P  P  D  *  N  R  V  P  S  I  L  N  V  L  K  V  D  A  *  V  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85253" stop="84942"/>
                    <exon start="84433" stop="84311"/>
                    <exon start="82533" stop="82453"/>
                    <exon start="82219" stop="82103"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGNFGSLFLCSLNPKQSLSPCAVCHSGRADKAIRMQAASLAFHPPALRTSPSYLSSKLPHHLNYSLFKHAPSTSTLSLTQVLSRNTICKPPAVGKYVREDYLVKKLSAKEIQELIKGERNVPLIIDFYATWCGPCILMAQELEMLAVEYENNALIVKVDTDDEYEFARDMQVRGLPTLYFISPDSSKDAIRTEGLIPIQMMRDIIDNDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="85527" PGL_stop="86026"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85527" e_stop="86026"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="85527" e_stop="86026" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85527" stop="86026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564532" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTGATAAAGGGAGAAGTGATACAGTAAAGTCCTTGAACATACAATCAGCAAGAAAATGGAAATAGAAGTTAATTATTAGTAATCTAAATAAAATGTTCTCCATAATTAGGTAGTGGCTGGGTCAAGAAGGATATCATCATCAAATTAAAAGATGATAACAAGGTAATTTCTATTTCCACAGCTAGCTAGAGTATTATTATTATTTTCTAGCTCATGATGAACTTCTTCCAATTCTCAATGAAGAGTCAACTGATCCTTTGGTAATACTAGCAAAGAGCTTAGCAATCTCAAGCTGAGTGTTGGCAATGATCTCCGTTCTCTTGAGATCCATTTCTCCTCTTTTGGCCTCAGCTTCTGCTCTCATTCTCTCGATGTCTCTCATCGTCTCCATTCGTGCTTGCTCTGACCTTACCACTACTTCAGCTAGCAAACGTATGCTCTCTCCGATCTCCCACCCTTCCACGGCCCTCTTTCGCTTATTCTTTGATCTCAATTTCG</gDNA_template>
            <first_frame> D  *  *  R  E  K  *  Y  S  K  V  L  E  H  T  I  S  K  K  M  E  I  E  V  N  Y  *  *  S  K  *  N  V  L  H  N  *  V  V  A  G  S  R  R  I  S  S  S  N  *  K  M  I  T  R  *  F  L  F  P  Q  L  A  R  V  L  L  L  F  S  S  S  *  *  T  S  S  N  S  Q  *  R  V  N  *  S  F  G  N  T  S  K  E  L  S  N  L  K  L  S  V  G  N  D  L  R  S  L  E  I  H  F  S  S  F  G  L  S  F  C  S  H  S  L  D  V  S  H  R  L  H  S  C  L  L  *  P  Y  H  Y  F  S  *  Q  T  Y  A  L  S  D  L  P  P  F  H  G  P  L  S  L  I  L  *  S  Q  F   </first_frame>
            <second_frame>  I  D  K  G  R  S  D  T  V  K  S  L  N  I  Q  S  A  R  K  W  K  *  K  L  I  I  S  N  L  N  K  M  F  S  I  I  R  *  W  L  G  Q  E  G  Y  H  H  Q  I  K  R  *  *  Q  G  N  F  Y  F  H  S  *  L  E  Y  Y  Y  Y  F  L  A  H  D  E  L  L  P  I  L  N  E  E  S  T  D  P  L  V  I  L  A  K  S  L  A  I  S  S  *  V  L  A  M  I  S  V  L  L  R  S  I  S  P  L  L  A  S  A  S  A  L  I  L  S  M  S  L  I  V  S  I  R  A  C  S  D  L  T  T  T  S  A  S  K  R  M  L  S  P  I  S  H  P  S  T  A  L  F  R  L  F  F  D  L  N  F  </second_frame>
            <third_frame>   L  I  K  G  E  V  I  Q  *  S  P  *  T  Y  N  Q  Q  E  N  G  N  R  S  *  L  L  V  I  *  I  K  C  S  P  *  L  G  S  G  W  V  K  K  D  I  I  I  K  L  K  D  D  N  K  V  I  S  I  S  T  A  S  *  S  I  I  I  I  F  *  L  M  M  N  F  F  Q  F  S  M  K  S  Q  L  I  L  W  *  Y  *  Q  R  A  *  Q  S  Q  A  E  C  W  Q  *  S  P  F  S  *  D  P  F  L  L  F  W  P  Q  L  L  L  S  F  S  R  C  L  S  S  S  P  F  V  L  A  L  T  L  P  L  L  Q  L  A  N  V  C  S  L  R  S  P  T  L  P  R  P  S  F  A  Y  S  L  I  S  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85825" stop="86025"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLAMISVLLRSISPLLASASALILSMSLIVSIRACSDLTTTSASKRMLSPISHPSTALFRLFFDLNF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="87663" PGL_stop="86000"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87663" e_stop="86928"/>
            <exon e_start="86144" e_stop="86000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.875" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87663" e_stop="86928" e_length="736"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.875">
            <gDNA_intron_boundary i_start="86927" i_stop="86145" i_length="783"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="86144" e_stop="86000" e_length="145"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87663" stop="86928"/>
              <exon start="86144" stop="86041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87659" stop="86928"/>
              <exon start="86144" stop="86000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585676" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTAATCTCTTCTCCCTCACTATGTCTTTTTCTTACAGGTCTCAAATATTGCTAGCGGCTAAGTAAAACTCAGTGGAAATGAAAGACGATTATTAGCTAGTTAATACTAATGGATAAAGAAGCTGCAAATCATCATCAAAATCATGAAATTTCTAACAAAGATGAATTCTCACCGAGGATTAAGCCGCTGCAAAATTACCATGTTCCCACTGGAAACAGTGATCGACTGAAGAGGGATGAATGGAGTGAAGGAGCAGTTTCGTGTCTTCTCGAAGCTTATGAAGCTAAATGGATACTCCGTAACAGAGCGAAGCTCAAGGGACAGGATTGGGAGGATGTGGCCAAGCACGTGTCGGCGCGTGTTTATTCAACTAAATCCCCCAAAACTCAGACGCAGTGTAAGAACAAAATCGAATCTATGAAGAAGAGGTACCGATCGGAATCCGCAACCGCCGCCGATGCTTCTTCCTGGCCGCTCTATCCTCGCCTTGACCTATTGTTACGTGGAAATAATGCATCCGCGGCTTCCTCTTCGCTAATTCCGCCGCCGCCGCTTCCGCCTAATACTAATTGTGTGATTGATGCCGTCGAACCACCACCACAGCAGCCAATATTACTACCTCCACCTCCGGCTACTCTTCCTCCTCCTCCTCCGCTCCCGCCGTCGCCGGCTTTGCCTTTTGGGAATGGTGATCAGAATTCGCATGGGTCTAATGGTCTTGACAGAGGAATAAAG : GAAGACATATTAATGGACGCCAAATTATCGGACAACGCAGCAGCACCAGATCAGAAAAACGCAACAGCTACAAATAGCAGCAGCACGCCAGCACTGTACAGCGACAACAAGAGCAAGTCGAAATTGAGATCAAAGAATAAGCGAA</gDNA_template>
            <first_frame> T  N  L  F  S  L  T  M  S  F  S  Y  R  S  Q  I  L  L  A  A  K  *  N  S  V  E  M  K  D  D  Y  *  L  V  N  T  N  G  *  R  S  C  K  S  S  S  K  S  *  N  F  *  Q  R  *  I  L  T  E  D  *  A  A  A  K  L  P  C  S  H  W  K  Q  *  S  T  E  E  G  *  M  E  *  R  S  S  F  V  S  S  R  S  L  *  S  *  M  D  T  P  *  Q  S  E  A  Q  G  T  G  L  G  G  C  G  Q  A  R  V  G  A  C  L  F  N  *  I  P  Q  N  S  D  A  V  *  E  Q  N  R  I  Y  E  E  E  V  P  I  G  I  R  N  R  R  R  C  F  F  L  A  A  L  S  S  P  *  P  I  V  T  W  K  *  C  I  R  G  F  L  F  A  N  S  A  A  A  A  S  A  *  Y  *  L  C  D  *  C  R  R  T  T  T  T  A  A  N  I  T  T  S  T  S  G  Y  S  S  S  S  S  S  A  P  A  V  A  G  F  A  F  W  E  W  *  S  E  F  A  W  V  *  W  S  *  Q  R  N  K   : G  R  H  I  N  G  R  Q  I  I  G  Q  R  S  S  T  R  S  E  K  R  N  S  Y  K  *  Q  Q  H  A  S  T  V  Q  R  Q  Q  E  Q  V  E  I  E  I  K  E  *  A   </first_frame>
            <second_frame>  L  I  S  S  P  S  L  C  L  F  L  T  G  L  K  Y  C  *  R  L  S  K  T  Q  W  K  *  K  T  I  I  S  *  L  I  L  M  D  K  E  A  A  N  H  H  Q  N  H  E  I  S  N  K  D  E  F  S  P  R  I  K  P  L  Q  N  Y  H  V  P  T  G  N  S  D  R  L  K  R  D  E  W  S  E  G  A  V  S  C  L  L  E  A  Y  E  A  K  W  I  L  R  N  R  A  K  L  K  G  Q  D  W  E  D  V  A  K  H  V  S  A  R  V  Y  S  T  K  S  P  K  T  Q  T  Q  C  K  N  K  I  E  S  M  K  K  R  Y  R  S  E  S  A  T  A  A  D  A  S  S  W  P  L  Y  P  R  L  D  L  L  L  R  G  N  N  A  S  A  A  S  S  S  L  I  P  P  P  P  L  P  P  N  T  N  C  V  I  D  A  V  E  P  P  P  Q  Q  P  I  L  L  P  P  P  P  A  T  L  P  P  P  P  P  L  P  P  S  P  A  L  P  F  G  N  G  D  Q  N  S  H  G  S  N  G  L  D  R  G  I  K  :  E  D  I  L  M  D  A  K  L  S  D  N  A  A  A  P  D  Q  K  N  A  T  A  T  N  S  S  S  T  P  A  L  Y  S  D  N  K  S  K  S  K  L  R  S  K  N  K  R  </second_frame>
            <third_frame>   *  S  L  L  P  H  Y  V  F  F  L  Q  V  S  N  I  A  S  G  *  V  K  L  S  G  N  E  R  R  L  L  A  S  *  Y  *  W  I  K  K  L  Q  I  I  I  K  I  M  K  F  L  T  K  M  N  S  H  R  G  L  S  R  C  K  I  T  M  F  P  L  E  T  V  I  D  *  R  G  M  N  G  V  K  E  Q  F  R  V  F  S  K  L  M  K  L  N  G  Y  S  V  T  E  R  S  S  R  D  R  I  G  R  M  W  P  S  T  C  R  R  V  F  I  Q  L  N  P  P  K  L  R  R  S  V  R  T  K  S  N  L  *  R  R  G  T  D  R  N  P  Q  P  P  P  M  L  L  P  G  R  S  I  L  A  L  T  Y  C  Y  V  E  I  M  H  P  R  L  P  L  R  *  F  R  R  R  R  F  R  L  I  L  I  V  *  L  M  P  S  N  H  H  H  S  S  Q  Y  Y  Y  L  H  L  R  L  L  F  L  L  L  L  R  S  R  R  R  R  L  C  L  L  G  M  V  I  R  I  R  M  G  L  M  V  L  T  E  E  *  R :   K  T  Y  *  W  T  P  N  Y  R  T  T  Q  Q  H  Q  I  R  K  T  Q  Q  L  Q  I  A  A  A  R  Q  H  C  T  A  T  T  R  A  S  R  N  *  D  Q  R  I  S  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87563" stop="86928"/>
                    <exon start="86144" stop="86001"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LILMDKEAANHHQNHEISNKDEFSPRIKPLQNYHVPTGNSDRLKRDEWSEGAVSCLLEAYEAKWILRNRAKLKGQDWEDVAKHVSARVYSTKSPKTQTQCKNKIESMKKRYRSESATAADASSWPLYPRLDLLLRGNNASAASSSLIPPPPLPPNTNCVIDAVEPPPQQPILLPPPPATLPPPPPLPPSPALPFGNGDQNSHGSNGLDRGIKEDILMDAKLSDNAAAPDQKNATATNSSSTPALYSDNKSKSKLRSKNKR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="96865" PGL_stop="96164"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96865" e_stop="96164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="96865" e_stop="96164" e_length="702"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96865" stop="96164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576324" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGGCACACCAAACTCTGTAACACAAAAGTCAACAATGGAGTATTTATATTGTTGATGTCTATGTATATCCAAATTATATAAAAGCAATTTCGGATTAGTTCAACGAATAGTAATGCTGAATTTGCTCTAGAAAAAAATATCATCGGAAATGGAGGTCAAACGAAGGGCGGTGAAGAATCTCGTTACGAAGCTGAGTTCCGTATCGGAGCAGACACGAACAGAAGCAATTTGTGAGCTGAGATTGATTTCGAAGAACGATTCCGATAGCAGACCGTTGATCGCCGACGCCGGTGCGGTTCCGTATTTGTCGGAATCGCTGTACTCGTCGAATAAATTGTCTCAGGAGAACGCAACTGCGGCGTTGCATAATCTATCAATTTCTCATAAAGACTTGTTGATGTCGACGCGAGGGCTCCTTGATGCTCTCTCTCACGCTCTCCGGAATCCGTCTTCTCCTTCCGTCGCTCAGTGCGCTGCTGGTACCATTTTCAGCTTACTCACTGTCGAGTCGTATCGGTCTATTATTGGGCACAAGCGTGATATCCTTTTTGGTCTTATAGACATAATAAAAAACCCTAATTCGGATTCTAGAACTGTAAAAGATGCTCTCAAAGCTCTTTTTGGTATTGCGCTTTACCCGATGAATCGTGCTCATATTATTGAGCTTGGAGCTGTACCTCCGTTGTTTTCATTGCTGTGTA</gDNA_template>
            <first_frame> T  A  H  Q  T  L  *  H  K  S  Q  Q  W  S  I  Y  I  V  D  V  Y  V  Y  P  N  Y  I  K  A  I  S  D  *  F  N  E  *  *  C  *  I  C  S  R  K  K  Y  H  R  K  W  R  S  N  E  G  R  *  R  I  S  L  R  S  *  V  P  Y  R  S  R  H  E  Q  K  Q  F  V  S  *  D  *  F  R  R  T  I  P  I  A  D  R  *  S  P  T  P  V  R  F  R  I  C  R  N  R  C  T  R  R  I  N  C  L  R  R  T  Q  L  R  R  C  I  I  Y  Q  F  L  I  K  T  C  *  C  R  R  E  G  S  L  M  L  S  L  T  L  S  G  I  R  L  L  L  P  S  L  S  A  L  L  V  P  F  S  A  Y  S  L  S  S  R  I  G  L  L  L  G  T  S  V  I  S  F  L  V  L  *  T  *  *  K  T  L  I  R  I  L  E  L  *  K  M  L  S  K  L  F  L  V  L  R  F  T  R  *  I  V  L  I  L  L  S  L  E  L  Y  L  R  C  F  H  C  C  V </first_frame>
            <second_frame>  R  H  T  K  L  C  N  T  K  V  N  N  G  V  F  I  L  L  M  S  M  Y  I  Q  I  I  *  K  Q  F  R  I  S  S  T  N  S  N  A  E  F  A  L  E  K  N  I  I  G  N  G  G  Q  T  K  G  G  E  E  S  R  Y  E  A  E  F  R  I  G  A  D  T  N  R  S  N  L  *  A  E  I  D  F  E  E  R  F  R  *  Q  T  V  D  R  R  R  R  C  G  S  V  F  V  G  I  A  V  L  V  E  *  I  V  S  G  E  R  N  C  G  V  A  *  S  I  N  F  S  *  R  L  V  D  V  D  A  R  A  P  *  C  S  L  S  R  S  P  E  S  V  F  S  F  R  R  S  V  R  C  W  Y  H  F  Q  L  T  H  C  R  V  V  S  V  Y  Y  W  A  Q  A  *  Y  P  F  W  S  Y  R  H  N  K  K  P  *  F  G  F  *  N  C  K  R  C  S  Q  S  S  F  W  Y  C  A  L  P  D  E  S  C  S  Y  Y  *  A  W  S  C  T  S  V  V  F  I  A  V   </second_frame>
            <third_frame>   G  T  P  N  S  V  T  Q  K  S  T  M  E  Y  L  Y  C  *  C  L  C  I  S  K  L  Y  K  S  N  F  G  L  V  Q  R  I  V  M  L  N  L  L  *  K  K  I  S  S  E  M  E  V  K  R  R  A  V  K  N  L  V  T  K  L  S  S  V  S  E  Q  T  R  T  E  A  I  C  E  L  R  L  I  S  K  N  D  S  D  S  R  P  L  I  A  D  A  G  A  V  P  Y  L  S  E  S  L  Y  S  S  N  K  L  S  Q  E  N  A  T  A  A  L  H  N  L  S  I  S  H  K  D  L  L  M  S  T  R  G  L  L  D  A  L  S  H  A  L  R  N  P  S  S  P  S  V  A  Q  C  A  A  G  T  I  F  S  L  L  T  V  E  S  Y  R  S  I  I  G  H  K  R  D  I  L  F  G  L  I  D  I  I  K  N  P  N  S  D  S  R  T  V  K  D  A  L  K  A  L  F  G  I  A  L  Y  P  M  N  R  A  H  I  I  E  L  G  A  V  P  P  L  F  S  L  L  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96734" stop="96165"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKISSEMEVKRRAVKNLVTKLSSVSEQTRTEAICELRLISKNDSDSRPLIADAGAVPYLSESLYSSNKLSQENATAALHNLSISHKDLLMSTRGLLDALSHALRNPSSPSVAQCAAGTIFSLLTVESYRSIIGHKRDILFGLIDIIKNPNSDSRTVKDALKALFGIALYPMNRAHIIELGAVPPLFSLLC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="101515" PGL_stop="98515"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101515" e_stop="101017"/>
            <exon e_start="99728" e_stop="99254"/>
            <exon e_start="99154" e_stop="98515"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101515" e_stop="101017" e_length="499"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="101016" i_stop="99729" i_length="1288"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99728" e_stop="99254" e_length="475"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="99253" i_stop="99155" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99154" e_stop="98515" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101515" stop="101017"/>
              <exon start="99728" stop="99254"/>
              <exon start="99154" stop="98515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98806" stop="98540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588795" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAAATGGAGGGCTCTATCAATATTCTCTCATTATCCCTTGTCTTAATTTTGAGCCTAGCACAAGGGGGACTAACCAACCCCAATTGTGCCAAGTTTTACCATGACAACAAAGACTCATCAACACTACAAGTCATTCATGTAGACAGCCCTTGTTCTCCTCTTAAACAACAACAAAATGCACACTCATTATCATGGGTGGATAGTGTTCTCCAAATGCAAAATAAGGACACAAATAGGCTACAATTCTTGGCTAGCCTTGTTGCTGGTAAATCTTTTGTCCCTATAGCTTCTGGTAGACAAATTCTACAAACACCAACTTATATTGTCAAGGCTAAAATTGGGACACCACCTCAACCTTTGTTGGTGGCTTTGGATAATAGTAATGATTTTTCTTGGTTCCCCTGTGGTGGATGTGTTGGTTGCTCTTCTAATGTTTTTTCATATGACAAGTCTACCACTTTCAGCAATGTTAGCTGTGAACGTGCCTCATGTAACCTG : GTACCAAGACGGGACTGCGACGCAGCCACCTGCAGCTTCAACCTAACCTACGGTGGTTCGAGCATAGGTGGAACCCTCTCATCGGAAACATTGGCACTCGCCACCGATCCGGTACCCGGATTTCTCTTTGGTTGCGTAAAAAAGATCTCCGGCAGCAACACACCACCTCAGGGTCTATTAGCTTTGGGCCGTGGTTTATTATCATTTATATCCCAATCTGAAAGCCTCTACAAGTCCACATTCTCCTATTGTTTGCCCAGTTACAAATCTCCCAATTTTTCTGGCACACTTAGATTAGGCCCAAAAGGCCAGCCACTGAGGATTAAAACCACACCATTGCTAAGAAACCCAAGGAGATCATCCTTTTACTATGTCAATTTAGTCGGAGTTAAAGTCGGAAAACGAATCGTCGATATCCCTCCCAGTGCATTCGCTTTCGATTCCAACACCGGCGCCGGCACAATAATCGATTCCG : GCACTGTGTTTACCAGACTCGTTGACCAAGCTTACACGGCGGTGAGAAATGAATTCAGGAGGAGAATGGGGAGGAACGCGACGGTGACATCACTTGGTGGATTCGACACCTGCTACACCGTCCCTATAACAATTCCAACAATAACATTTATGTTCGCCGGAATGAACGTGACGCTGCCGCAAGACAACTTCCTGATTAAAAGTAGCTCAAGCAGCACCACTTGCTTAGCCATGGCTGCTTCACCTACCGATCCAGTGAATTCCGTGCTCAACGTGATCGCCAGCTGGCAGCAACAGAATCATCGGATTCTCTTTGACGTACCAAATTCTAGGGTTGGGGTTGCCCGTGAAACCTGTAGCTGAAAAACAAATGGAGGCCACTTACTTAATTGGGTTTTGGATTTTTATTAATTAAGTTTAATCATTTGATGGGACCTTATTTTTATTTTTATGTGTTCTTTTTTTAGTTAATTGTTAGAGGTTTGGCACTTTAATATTGTCGGGTCGGTGCATTTTCGTTTTTTGGATTTTTATGTGTTCACGGGTTGAAATTAATACTTCCCTGTTTGCAGATACTTTCTTGTTTATTAGTTTCCTACCATCAATGGAAAAAATAAAATAAAATGATTACTGGTCCCTTC</gDNA_template>
            <first_frame> P  N  G  G  L  Y  Q  Y  S  L  I  I  P  C  L  N  F  E  P  S  T  R  G  T  N  Q  P  Q  L  C  Q  V  L  P  *  Q  Q  R  L  I  N  T  T  S  H  S  C  R  Q  P  L  F  S  S  *  T  T  T  K  C  T  L  I  I  M  G  G  *  C  S  P  N  A  K  *  G  H  K  *  A  T  I  L  G  *  P  C  C  W  *  I  F  C  P  Y  S  F  W  *  T  N  S  T  N  T  N  L  Y  C  Q  G  *  N  W  D  T  T  S  T  F  V  G  G  F  G  *  *  *  *  F  F  L  V  P  L  W  W  M  C  W  L  L  F  *  C  F  F  I  *  Q  V  Y  H  F  Q  Q  C  *  L  *  T  C  L  M  *  P   : G  T  K  T  G  L  R  R  S  H  L  Q  L  Q  P  N  L  R  W  F  E  H  R  W  N  P  L  I  G  N  I  G  T  R  H  R  S  G  T  R  I  S  L  W  L  R  K  K  D  L  R  Q  Q  H  T  T  S  G  S  I  S  F  G  P  W  F  I  I  I  Y  I  P  I  *  K  P  L  Q  V  H  I  L  L  L  F  A  Q  L  Q  I  S  Q  F  F  W  H  T  *  I  R  P  K  R  P  A  T  E  D  *  N  H  T  I  A  K  K  P  K  E  I  I  L  L  L  C  Q  F  S  R  S  *  S  R  K  T  N  R  R  Y  P  S  Q  C  I  R  F  R  F  Q  H  R  R  R  H  N  N  R  F  R :   H  C  V  Y  Q  T  R  *  P  S  L  H  G  G  E  K  *  I  Q  E  E  N  G  E  E  R  D  G  D  I  T  W  W  I  R  H  L  L  H  R  P  Y  N  N  S  N  N  N  I  Y  V  R  R  N  E  R  D  A  A  A  R  Q  L  P  D  *  K  *  L  K  Q  H  H  L  L  S  H  G  C  F  T  Y  R  S  S  E  F  R  A  Q  R  D  R  Q  L  A  A  T  E  S  S  D  S  L  *  R  T  K  F  *  G  W  G  C  P  *  N  L  *  L  K  N  K  W  R  P  L  T  *  L  G  F  G  F  L  L  I  K  F  N  H  L  M  G  P  Y  F  Y  F  Y  V  F  F  F  *  L  I  V  R  G  L  A  L  *  Y  C  R  V  G  A  F  S  F  F  G  F  L  C  V  H  G  L  K  L  I  L  P  C  L  Q  I  L  S  C  L  L  V  S  Y  H  Q  W  K  K  *  N  K  M  I  T  G  P  F </first_frame>
            <second_frame>  Q  M  E  G  S  I  N  I  L  S  L  S  L  V  L  I  L  S  L  A  Q  G  G  L  T  N  P  N  C  A  K  F  Y  H  D  N  K  D  S  S  T  L  Q  V  I  H  V  D  S  P  C  S  P  L  K  Q  Q  Q  N  A  H  S  L  S  W  V  D  S  V  L  Q  M  Q  N  K  D  T  N  R  L  Q  F  L  A  S  L  V  A  G  K  S  F  V  P  I  A  S  G  R  Q  I  L  Q  T  P  T  Y  I  V  K  A  K  I  G  T  P  P  Q  P  L  L  V  A  L  D  N  S  N  D  F  S  W  F  P  C  G  G  C  V  G  C  S  S  N  V  F  S  Y  D  K  S  T  T  F  S  N  V  S  C  E  R  A  S  C  N  L  :  V  P  R  R  D  C  D  A  A  T  C  S  F  N  L  T  Y  G  G  S  S  I  G  G  T  L  S  S  E  T  L  A  L  A  T  D  P  V  P  G  F  L  F  G  C  V  K  K  I  S  G  S  N  T  P  P  Q  G  L  L  A  L  G  R  G  L  L  S  F  I  S  Q  S  E  S  L  Y  K  S  T  F  S  Y  C  L  P  S  Y  K  S  P  N  F  S  G  T  L  R  L  G  P  K  G  Q  P  L  R  I  K  T  T  P  L  L  R  N  P  R  R  S  S  F  Y  Y  V  N  L  V  G  V  K  V  G  K  R  I  V  D  I  P  P  S  A  F  A  F  D  S  N  T  G  A  G  T  I  I  D  S   : G  T  V  F  T  R  L  V  D  Q  A  Y  T  A  V  R  N  E  F  R  R  R  M  G  R  N  A  T  V  T  S  L  G  G  F  D  T  C  Y  T  V  P  I  T  I  P  T  I  T  F  M  F  A  G  M  N  V  T  L  P  Q  D  N  F  L  I  K  S  S  S  S  S  T  T  C  L  A  M  A  A  S  P  T  D  P  V  N  S  V  L  N  V  I  A  S  W  Q  Q  Q  N  H  R  I  L  F  D  V  P  N  S  R  V  G  V  A  R  E  T  C  S  *  K  T  N  G  G  H  L  L  N  W  V  L  D  F  Y  *  L  S  L  I  I  *  W  D  L  I  F  I  F  M  C  S  F  F  S  *  L  L  E  V  W  H  F  N  I  V  G  S  V  H  F  R  F  L  D  F  Y  V  F  T  G  *  N  *  Y  F  P  V  C  R  Y  F  L  V  Y  *  F  P  T  I  N  G  K  N  K  I  K  *  L  L  V  P   </second_frame>
            <third_frame>   K  W  R  A  L  S  I  F  S  H  Y  P  L  S  *  F  *  A  *  H  K  G  D  *  P  T  P  I  V  P  S  F  T  M  T  T  K  T  H  Q  H  Y  K  S  F  M  *  T  A  L  V  L  L  L  N  N  N  K  M  H  T  H  Y  H  G  W  I  V  F  S  K  C  K  I  R  T  Q  I  G  Y  N  S  W  L  A  L  L  L  V  N  L  L  S  L  *  L  L  V  D  K  F  Y  K  H  Q  L  I  L  S  R  L  K  L  G  H  H  L  N  L  C  W  W  L  W  I  I  V  M  I  F  L  G  S  P  V  V  D  V  L  V  A  L  L  M  F  F  H  M  T  S  L  P  L  S  A  M  L  A  V  N  V  P  H  V  T  W :   Y  Q  D  G  T  A  T  Q  P  P  A  A  S  T  *  P  T  V  V  R  A  *  V  E  P  S  H  R  K  H  W  H  S  P  P  I  R  Y  P  D  F  S  L  V  A  *  K  R  S  P  A  A  T  H  H  L  R  V  Y  *  L  W  A  V  V  Y  Y  H  L  Y  P  N  L  K  A  S  T  S  P  H  S  P  I  V  C  P  V  T  N  L  P  I  F  L  A  H  L  D  *  A  Q  K  A  S  H  *  G  L  K  P  H  H  C  *  E  T  Q  G  D  H  P  F  T  M  S  I  *  S  E  L  K  S  E  N  E  S  S  I  S  L  P  V  H  S  L  S  I  P  T  P  A  P  A  Q  *  S  I  P  :  A  L  C  L  P  D  S  L  T  K  L  T  R  R  *  E  M  N  S  G  G  E  W  G  G  T  R  R  *  H  H  L  V  D  S  T  P  A  T  P  S  L  *  Q  F  Q  Q  *  H  L  C  S  P  E  *  T  *  R  C  R  K  T  T  S  *  L  K  V  A  Q  A  A  P  L  A  *  P  W  L  L  H  L  P  I  Q  *  I  P  C  S  T  *  S  P  A  G  S  N  R  I  I  G  F  S  L  T  Y  Q  I  L  G  L  G  L  P  V  K  P  V  A  E  K  Q  M  E  A  T  Y  L  I  G  F  W  I  F  I  N  *  V  *  S  F  D  G  T  L  F  L  F  L  C  V  L  F  L  V  N  C  *  R  F  G  T  L  I  L  S  G  R  C  I  F  V  F  W  I  F  M  C  S  R  V  E  I  N  T  S  L  F  A  D  T  F  L  F  I  S  F  L  P  S  M  E  K  I  K  *  N  D  Y  W  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101514" stop="101017"/>
                    <exon start="99728" stop="99254"/>
                    <exon start="99154" stop="98793"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1332</number_coding_nucleotides>
                  <number_encoded_amino_acids>444</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMEGSINILSLSLVLILSLAQGGLTNPNCAKFYHDNKDSSTLQVIHVDSPCSPLKQQQNAHSLSWVDSVLQMQNKDTNRLQFLASLVAGKSFVPIASGRQILQTPTYIVKAKIGTPPQPLLVALDNSNDFSWFPCGGCVGCSSNVFSYDKSTTFSNVSCERASCNLVPRRDCDAATCSFNLTYGGSSIGGTLSSETLALATDPVPGFLFGCVKKISGSNTPPQGLLALGRGLLSFISQSESLYKSTFSYCLPSYKSPNFSGTLRLGPKGQPLRIKTTPLLRNPRRSSFYYVNLVGVKVGKRIVDIPPSAFAFDSNTGAGTIIDSGTVFTRLVDQAYTAVRNEFRRRMGRNATVTSLGGFDTCYTVPITIPTITFMFAGMNVTLPQDNFLIKSSSSSTTCLAMAASPTDPVNSVLNVIASWQQQNHRILFDVPNSRVGVARETCS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="118003" PGL_stop="120275"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118003" e_stop="118264"/>
            <exon e_start="118374" e_stop="118565"/>
            <exon e_start="119711" e_stop="120275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.789" e_score="0.977"/>
          <exon-intron don_prob="0.998" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="118003" e_stop="118264" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.789">
            <gDNA_intron_boundary i_start="118265" i_stop="118373" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="118374" e_stop="118565" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.961">
            <gDNA_intron_boundary i_start="118566" i_stop="119710" i_length="1145"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119711" e_stop="120275" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118003" stop="118264"/>
              <exon start="118374" stop="118565"/>
              <exon start="119711" stop="120275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTACAGGCACAAAAAAGGTGTTAATTAAGATGATAGGAAATAAGGTTCGTCATCGCGTCCGTCAGGTCCGGCTTTCCAAATTTCAGTATATATATTTGTGCTGAAAAGAAACAACAAGATTGAAAAAAAAAAAGAGAAGGAAAAAAATATATTCAGGGGAATGCAAGCAGCGGCGATGGCGGCTCAACCAGTAATCAAGGTAGCTGGGCTTTGCGGTTCCCTCCGTAAAGGTTCCTACAATCGTGGTCTCCTCAATGCCG : CGATGGAGATATGCAAGGATTCTATAACGGGAATGGAGATCGAGTACGTCGATATATCGCCGTTGCCGTTTCTGAACACGGATCTTGAGGTGGACGGGACTTATCCCCCGGTTGTCGAGGCTTTTCGTAAGAAAATTGAAGAAGCTGATTGTTTCCTTTTTGCTTCTCCAGAGTACAATTACTCCATCACAG : GACCGTTGAAGAATGCAATTGATTGGGCCTCTCGACCTCCAAATGTTTGGGCTGATAAAGCAGCAGCAATGGTGAGTGCTGGAGGTGGCTTTGGTGGAGGACGATCACAATATCACCTCCGACAGATAGGAGTCTTCCTTGATCTTCATTTCATTAACAAACCTGAATTTTTCCTGAACGCGTTCCAGCAACCACCAAAGTTTGACAGTGATGGTGTGCTGACAGATGAAGAAACCAAGCAGAGACTCAGAGCAGTTCTTTTGGCTTTACAAGCACTTTCCTTGAAACTCAAAGGCAAGTGTGAATAGTTTCTACCAGTAAATGTGGTCCATTTCTTCCTCCAATGTTGCGTGAAAATGCTTGAGCGACCGTCGGGAAAGATTTTTAGCGGGGTTGGTAAAGAATTGACATTTCCAGCTCACATGGGAATAAATATCTACTTATCCAGTATTGAAAATTTCATGGTAATTGATGTAATGGCTCCTACATTTTTTCTCTGTCTTTCGTTTTCTGTTCTATCAGCAACACGTTTGTTTTACAAAATATCATCAATACATTTACTTCG</gDNA_template>
            <first_frame> L  Y  R  H  K  K  G  V  N  *  D  D  R  K  *  G  S  S  S  R  P  S  G  P  A  F  Q  I  S  V  Y  I  F  V  L  K  R  N  N  K  I  E  K  K  K  E  K  E  K  N  I  F  R  G  M  Q  A  A  A  M  A  A  Q  P  V  I  K  V  A  G  L  C  G  S  L  R  K  G  S  Y  N  R  G  L  L  N  A   : A  M  E  I  C  K  D  S  I  T  G  M  E  I  E  Y  V  D  I  S  P  L  P  F  L  N  T  D  L  E  V  D  G  T  Y  P  P  V  V  E  A  F  R  K  K  I  E  E  A  D  C  F  L  F  A  S  P  E  Y  N  Y  S  I  T   : G  P  L  K  N  A  I  D  W  A  S  R  P  P  N  V  W  A  D  K  A  A  A  M  V  S  A  G  G  G  F  G  G  G  R  S  Q  Y  H  L  R  Q  I  G  V  F  L  D  L  H  F  I  N  K  P  E  F  F  L  N  A  F  Q  Q  P  P  K  F  D  S  D  G  V  L  T  D  E  E  T  K  Q  R  L  R  A  V  L  L  A  L  Q  A  L  S  L  K  L  K  G  K  C  E  *  F  L  P  V  N  V  V  H  F  F  L  Q  C  C  V  K  M  L  E  R  P  S  G  K  I  F  S  G  V  G  K  E  L  T  F  P  A  H  M  G  I  N  I  Y  L  S  S  I  E  N  F  M  V  I  D  V  M  A  P  T  F  F  L  C  L  S  F  S  V  L  S  A  T  R  L  F  Y  K  I  S  S  I  H  L  L   </first_frame>
            <second_frame>  C  T  G  T  K  K  V  L  I  K  M  I  G  N  K  V  R  H  R  V  R  Q  V  R  L  S  K  F  Q  Y  I  Y  L  C  *  K  E  T  T  R  L  K  K  K  K  R  R  K  K  I  Y  S  G  E  C  K  Q  R  R  W  R  L  N  Q  *  S  R  *  L  G  F  A  V  P  S  V  K  V  P  T  I  V  V  S  S  M  P  :  R  W  R  Y  A  R  I  L  *  R  E  W  R  S  S  T  S  I  Y  R  R  C  R  F  *  T  R  I  L  R  W  T  G  L  I  P  R  L  S  R  L  F  V  R  K  L  K  K  L  I  V  S  F  L  L  L  Q  S  T  I  T  P  S  Q  :  D  R  *  R  M  Q  L  I  G  P  L  D  L  Q  M  F  G  L  I  K  Q  Q  Q  W  *  V  L  E  V  A  L  V  E  D  D  H  N  I  T  S  D  R  *  E  S  S  L  I  F  I  S  L  T  N  L  N  F  S  *  T  R  S  S  N  H  Q  S  L  T  V  M  V  C  *  Q  M  K  K  P  S  R  D  S  E  Q  F  F  W  L  Y  K  H  F  P  *  N  S  K  A  S  V  N  S  F  Y  Q  *  M  W  S  I  S  S  S  N  V  A  *  K  C  L  S  D  R  R  E  R  F  L  A  G  L  V  K  N  *  H  F  Q  L  T  W  E  *  I  S  T  Y  P  V  L  K  I  S  W  *  L  M  *  W  L  L  H  F  F  S  V  F  R  F  L  F  Y  Q  Q  H  V  C  F  T  K  Y  H  Q  Y  I  Y  F  </second_frame>
            <third_frame>   V  Q  A  Q  K  R  C  *  L  R  *  *  E  I  R  F  V  I  A  S  V  R  S  G  F  P  N  F  S  I  Y  I  C  A  E  K  K  Q  Q  D  *  K  K  K  R  E  G  K  K  Y  I  Q  G  N  A  S  S  G  D  G  G  S  T  S  N  Q  G  S  W  A  L  R  F  P  P  *  R  F  L  Q  S  W  S  P  Q  C  R :   D  G  D  M  Q  G  F  Y  N  G  N  G  D  R  V  R  R  Y  I  A  V  A  V  S  E  H  G  S  *  G  G  R  D  L  S  P  G  C  R  G  F  S  *  E  N  *  R  S  *  L  F  P  F  C  F  S  R  V  Q  L  L  H  H  R :   T  V  E  E  C  N  *  L  G  L  S  T  S  K  C  L  G  *  *  S  S  S  N  G  E  C  W  R  W  L  W  W  R  T  I  T  I  S  P  P  T  D  R  S  L  P  *  S  S  F  H  *  Q  T  *  I  F  P  E  R  V  P  A  T  T  K  V  *  Q  *  W  C  A  D  R  *  R  N  Q  A  E  T  Q  S  S  S  F  G  F  T  S  T  F  L  E  T  Q  R  Q  V  *  I  V  S  T  S  K  C  G  P  F  L  P  P  M  L  R  E  N  A  *  A  T  V  G  K  D  F  *  R  G  W  *  R  I  D  I  S  S  S  H  G  N  K  Y  L  L  I  Q  Y  *  K  F  H  G  N  *  C  N  G  S  Y  I  F  S  L  S  F  V  F  C  S  I  S  N  T  F  V  L  Q  N  I  I  N  T  F  T  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118048" stop="118264"/>
                    <exon start="118374" stop="118565"/>
                    <exon start="119711" stop="120018"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSSSRPSGPAFQISVYIFVLKRNNKIEKKKEKEKNIFRGMQAAAMAAQPVIKVAGLCGSLRKGSYNRGLLNAAMEICKDSITGMEIEYVDISPLPFLNTDLEVDGTYPPVVEAFRKKIEEADCFLFASPEYNYSITGPLKNAIDWASRPPNVWADKAAAMVSAGGGFGGGRSQYHLRQIGVFLDLHFINKPEFFLNAFQQPPKFDSDGVLTDEETKQRLRAVLLALQALSLKLKGKCE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120019" stop="120273"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLPVNVVHFFLQCCVKMLERPSGKIFSGVGKELTFPAHMGINIYLSSIENFMVIDVMAPTFFLCLSFSVLSATRLFYKISSIHLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="122259" PGL_stop="121263"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122259" e_stop="122169"/>
            <exon e_start="121928" e_stop="121737"/>
            <exon e_start="121652" e_stop="121263"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122259" e_stop="122169" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.964">
            <gDNA_intron_boundary i_start="122168" i_stop="121929" i_length="240"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121928" e_stop="121737" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.995">
            <gDNA_intron_boundary i_start="121736" i_stop="121653" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="121652" e_stop="121263" e_length="390"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122259" stop="122169"/>
              <exon start="121928" stop="121737"/>
              <exon start="121652" stop="121263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122259" stop="122169"/>
              <exon start="121928" stop="121907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587118" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGGTGATGGCGGCTGAAGCAGTAATCAAGGTAGTAGCACTCTGCGGTTCCCTCCGTGAAGCCTCCTATAATCGCGGTCTCCTCAATGCCG : CAATGGAGATATGCAAGGATTCTATAAAGGGAATGGAGATTGAGTACGTCGATCTATCGTTGTTGCCGTTTACAAACGAGGACCTTGAGGTGAACGGAACTTATCCAGGCGAAGTAGAGGTTTTTCGTAAAAAAATTGAAGAAGCTGATTGTTTCCTCTTTGCTTCTCCCGAATACAATTACTCCGTTACAG : CACCATTGAAAAATGCAATTGATTGGGCATCTCGACCTCCTAATGTTTGGGCTGATAAATCAGCAGCAATTGTGAGTGCTGGAGGTAACTTTGGTGGAGGACGAGCACACTATCATCTTCGACAAATTGGAATCTACATTGATCTTCATTTCATTAACAAGCCTGAACTTTTCGTGTTTGCATTTGAATCACCACCAAAGTTTGACAGCAACGGTGTGCTGATACATGAAGAAACCAAGCACAAACTCAGATCAGTCCTTTTAGCTTTACAGGCATTTGCCTTGAGACTCAAAAGTCAAGTATGAATAGCTTCTAATTGTATCCCTTCAATAATTTTCAACTCTGTTTGAAATTAAAGCGTAGTTATTATTATTTCGATTGTTGTTCAAC</gDNA_template>
            <first_frame> V  V  M  A  A  E  A  V  I  K  V  V  A  L  C  G  S  L  R  E  A  S  Y  N  R  G  L  L  N  A   : A  M  E  I  C  K  D  S  I  K  G  M  E  I  E  Y  V  D  L  S  L  L  P  F  T  N  E  D  L  E  V  N  G  T  Y  P  G  E  V  E  V  F  R  K  K  I  E  E  A  D  C  F  L  F  A  S  P  E  Y  N  Y  S  V  T   : A  P  L  K  N  A  I  D  W  A  S  R  P  P  N  V  W  A  D  K  S  A  A  I  V  S  A  G  G  N  F  G  G  G  R  A  H  Y  H  L  R  Q  I  G  I  Y  I  D  L  H  F  I  N  K  P  E  L  F  V  F  A  F  E  S  P  P  K  F  D  S  N  G  V  L  I  H  E  E  T  K  H  K  L  R  S  V  L  L  A  L  Q  A  F  A  L  R  L  K  S  Q  V  *  I  A  S  N  C  I  P  S  I  I  F  N  S  V  *  N  *  S  V  V  I  I  I  S  I  V  V  Q  </first_frame>
            <second_frame>  W  *  W  R  L  K  Q  *  S  R  *  *  H  S  A  V  P  S  V  K  P  P  I  I  A  V  S  S  M  P  :  Q  W  R  Y  A  R  I  L  *  R  E  W  R  L  S  T  S  I  Y  R  C  C  R  L  Q  T  R  T  L  R  *  T  E  L  I  Q  A  K  *  R  F  F  V  K  K  L  K  K  L  I  V  S  S  L  L  L  P  N  T  I  T  P  L  Q  :  H  H  *  K  M  Q  L  I  G  H  L  D  L  L  M  F  G  L  I  N  Q  Q  Q  L  *  V  L  E  V  T  L  V  E  D  E  H  T  I  I  F  D  K  L  E  S  T  L  I  F  I  S  L  T  S  L  N  F  S  C  L  H  L  N  H  H  Q  S  L  T  A  T  V  C  *  Y  M  K  K  P  S  T  N  S  D  Q  S  F  *  L  Y  R  H  L  P  *  D  S  K  V  K  Y  E  *  L  L  I  V  S  L  Q  *  F  S  T  L  F  E  I  K  A  *  L  L  L  F  R  L  L  F  N </second_frame>
            <third_frame>   G  D  G  G  *  S  S  N  Q  G  S  S  T  L  R  F  P  P  *  S  L  L  *  S  R  S  P  Q  C  R :   N  G  D  M  Q  G  F  Y  K  G  N  G  D  *  V  R  R  S  I  V  V  A  V  Y  K  R  G  P  *  G  E  R  N  L  S  R  R  S  R  G  F  S  *  K  N  *  R  S  *  L  F  P  L  C  F  S  R  I  Q  L  L  R  Y  S :   T  I  E  K  C  N  *  L  G  I  S  T  S  *  C  L  G  *  *  I  S  S  N  C  E  C  W  R  *  L  W  W  R  T  S  T  L  S  S  S  T  N  W  N  L  H  *  S  S  F  H  *  Q  A  *  T  F  R  V  C  I  *  I  T  T  K  V  *  Q  Q  R  C  A  D  T  *  R  N  Q  A  Q  T  Q  I  S  P  F  S  F  T  G  I  C  L  E  T  Q  K  S  S  M  N  S  F  *  L  Y  P  F  N  N  F  Q  L  C  L  K  L  K  R  S  Y  Y  Y  F  D  C  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0140O23.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122259" stop="122169"/>
                    <exon start="121928" stop="121737"/>
                    <exon start="121652" stop="121348"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVMAAEAVIKVVALCGSLREASYNRGLLNAAMEICKDSIKGMEIEYVDLSLLPFTNEDLEVNGTYPGEVEVFRKKIEEADCFLFASPEYNYSVTAPLKNAIDWASRPPNVWADKSAAIVSAGGNFGGGRAHYHLRQIGIYIDLHFINKPELFVFAFESPPKFDSNGVLIHEETKHKLRSVLLALQAFALRLKSQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 37 chains have been computed
$ 
$ memory statistics:
$ 47896 bytes spliced alignments in total
$ 23 spliced alignments have been stored
$ 2082 bytes was the average size of a spliced alignment
$ 27048 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1502 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 41 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:20:16
-->
