<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 07:08:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577707" ref_strand="-" ref_description="SGN-E577707 [LE15CB04]">
      <seq>ttgctcatcaaggaaaagcttcgctccctcgtttccgtttcaagatcccggagaatcactccacaaactgattctgatgaaacagaaaaaactgagtccaaatatggaactgatgctgaggaaggtgaagattggtctgacattgataacttagggagtgatggattagatgaagatgatgaagattctgatgaggactggagtgatgatggtgatgatatacctccagacttcagtgatgatgaaggtaccgttaaccttgaagagggcaaactgactacacaagttaatggtgcaaagaagaaggaaaacaaggtcttggacccagtttttccagatggccggcctcgagaacgctggtgataaatataagtttgtgcttgagattatttcatgcacaacagacacggataaaagatctaaagttacaaaatctgctattagcctatcacagtctcacaaggtttgtagtccccagggcaaaaggtgcttccattcttttcacaccctggctacacattcttttctcttaataggccttggctaagcatctttgcatcagatttatggtttgatgttgtcgtaagtgaaatatctttacatcacatagctcatataagcttctgctggaagtggcatgtgaattcttagttctgtactaatccagacactaaaaaagcttcatatgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="1" stop="965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="664" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="692" r_length="671" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="693" polyA_stop="706"/>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E577707" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577707" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTCCCTCGTTTCCGTTTCAAGATCCCGGAGAATCACTCCACAAACTGATTCTGATGAAACAGAAAAAACTGAGTCCAAATATGGAACTGATGCTGAGGAAGGTGAAGATTGGTCCGACATTGATAACTTAGGGAGTGATGGA-T---T----A-GATGAAGATTCTGATGAGGACTGGAGTGATGATGGTGATAATATACCTCCAGACTTCAGTGATAATGAAGGTACCGTTAACCTTGAAGAGGGCAAACTGACTACACAAGTTAATGGTGCAAAGAAGAAGGAAAACAAGGTTTTGGACCCAGTTTTTCCAGATGGCCGGCCTCGTGAGCGCTGGTGATAAAAATATAAGTTTGTGCTTGAGATTATTTCATGCACAAAAGACACGGATAAAAGATCTAAAGTTACAAAATCTGTTATTAGCCTATTACAGTCTCACAAGGTTTGTAGTCCCCAGGGTAAAAGGTGCTTCCATTCTTTTCACACCCTGGCTACACATTCTTTTCTCTTAATAGGCCTTGGCTTAGCATCTTTGCATCAGATTTATGGTTTGATGTTGTCGTAAGTGAAATATCTTTACATCACATAGCTCATATAAGCTTCTGCTGGGAGTGGCATGTGAATTCTTAGTTCTGTACTAATCCAGACACTAAAAAAGCTTCATATGTAAG</genome_strand>
        <mrna_strand>CGCTCCCTCGTTTCCGTTTCAAGATCCCGGAGAATCACTCCACAAACTGATTCTGATGAAACAGAAAAAACTGAGTCCAAATATGGAACTGATGCTGAGGAAGGTGAAGATTGGTCTGACATTGATAACTTAGGGAGTGATGGATTAGATGAAGATGATGAAGATTCTGATGAGGACTGGAGTGATGATGGTGATGATATACCTCCAGACTTCAGTGATGATGAAGGTACCGTTAACCTTGAAGAGGGCAAACTGACTACACAAGTTAATGGTGCAAAGAAGAAGGAAAACAAGGTCTTGGACCCAGTTTTTCCAGATGGCCGGCCTCGAGAACGCTGGTGAT--AAATATAAGTTTGTGCTTGAGATTATTTCATGCACAACAGACACGGATAAAAGATCTAAAGTTACAAAATCTGCTATTAGCCTATCACAGTCTCACAAGGTTTGTAGTCCCCAGGGCAAAAGGTGCTTCCATTCTTTTCACACCCTGGCTACACATTCTTTTCTCTTAATAGGCCTTGGCTAAGCATCTTTGCATCAGATTTATGGTTTGATGTTGTCGTAAGTGAAATATCTTTACATCACATAGCTCATATAAGCTTCTGCTGGAAGTGGCATGTGAATTCTTAGTTCTGTACTAATCCAGACACTAAAAAAGCTTCATATGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397804" ref_strand="+" ref_description="SGN-E397804 [TUS-27-D4](-)">
      <seq>tcccggagaatcactccacaaactgattctgatgaaacagaaaaaactgagtccaaatatggaactgatgctgaggaaggtgaagattggtccgacattgataacttagggagtgatggattagatgaagattctgatgaggactggagtgatgatggtgataatatacctccagacttcagtgataatgaaggtaccgttaaccttgaagagggcaaactgactacacaagttaatggtgcaaagaagaaggaaaacaaggttttggacccagtttttccagatggccggcctcgtgagcgctggtgataaaaatataagtttgtgcttgagattatttcatgcacaaaagacacggataaaagatctaaagttacaaaatctgttattagcctattacagtctcacaaggtttgtagtccccagggtaaaaggtgcttccattcttttcacaccctggctacacattcttttctcttaataggccttggcttagcatctttgcatcagatttatggtttgatgttgtcgtaagtgaaatatctttacatcacatagctcatataagcttctgctgggagtggcatgtgaattcttagttctgtactaatccagacactaaaaaagcttcatatgtaagattgtttggctgatgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="1" stop="984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25" g_stop="692" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E397804" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25" e_stop="692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCGGAGAATCACTCCACAAACTGATTCTGATGAAACAGAAAAAACTGAGTCCAAATATGGAACTGATGCTGAGGAAGGTGAAGATTGGTCCGACATTGATAACTTAGGGAGTGATGGATTAGATGAAGATTCTGATGAGGACTGGAGTGATGATGGTGATAATATACCTCCAGACTTCAGTGATAATGAAGGTACCGTTAACCTTGAAGAGGGCAAACTGACTACACAAGTTAATGGTGCAAAGAAGAAGGAAAACAAGGTTTTGGACCCAGTTTTTCCAGATGGCCGGCCTCGTGAGCGCTGGTGATAAAAATATAAGTTTGTGCTTGAGATTATTTCATGCACAAAAGACACGGATAAAAGATCTAAAGTTACAAAATCTGTTATTAGCCTATTACAGTCTCACAAGGTTTGTAGTCCCCAGGGTAAAAGGTGCTTCCATTCTTTTCACACCCTGGCTACACATTCTTTTCTCTTAATAGGCCTTGGCTTAGCATCTTTGCATCAGATTTATGGTTTGATGTTGTCGTAAGTGAAATATCTTTACATCACATAGCTCATATAAGCTTCTGCTGGGAGTGGCATGTGAATTCTTAGTTCTGTACTAATCCAGACACTAAAAAAGCTTCATATGTAAGATTGTTTGGCTGATTGTAAAGTGTAGCT</genome_strand>
        <mrna_strand>TCCCGGAGAATCACTCCACAAACTGATTCTGATGAAACAGAAAAAACTGAGTCCAAATATGGAACTGATGCTGAGGAAGGTGAAGATTGGTCCGACATTGATAACTTAGGGAGTGATGGATTAGATGAAGATTCTGATGAGGACTGGAGTGATGATGGTGATAATATACCTCCAGACTTCAGTGATAATGAAGGTACCGTTAACCTTGAAGAGGGCAAACTGACTACACAAGTTAATGGTGCAAAGAAGAAGGAAAACAAGGTTTTGGACCCAGTTTTTCCAGATGGCCGGCCTCGTGAGCGCTGGTGATAAAAATATAAGTTTGTGCTTGAGATTATTTCATGCACAAAAGACACGGATAAAAGATCTAAAGTTACAAAATCTGTTATTAGCCTATTACAGTCTCACAAGGTTTGTAGTCCCCAGGGTAAAAGGTGCTTCCATTCTTTTCACACCCTGGCTACACATTCTTTTCTCTTAATAGGCCTTGGCTTAGCATCTTTGCATCAGATTTATGGTTTGATGTTGTCGTAAGTGAAATATCTTTACATCACATAGCTCATATAAGCTTCTGCTGGGAGTGGCATGTGAATTCTTAGTTCTGTACTAATCCAGACACTAAAAAAGCTTCATATGTAAGATTGTTTGGCTGA-TGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267103" ref_strand="+" ref_description="SGN-E267103 [cLEI-4-J13]">
      <seq>gaaacctggttgaaccatattttcttagtttctaacagcaaggtataacagcgagactcgaaagcaaacatgagataataataaacgaaaatcactcttctttactctactccagacaagagttctacaacttttatatatacaaagctctggaaacaagctgcaaatattccgcccataatttttcgcaagctaaaagttgcatctaccagctcaaaacaagtcgctgaccagcactaccctacagaagtatttacagaaaatgaaaagaccctcaacaacatcatgagaaccgcaagatagtaaaggaaaaacaaaacctccataaataaaacttgcatgataacaggatacaccgtgcaccccctgttaatgcataaagtctagacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="8715" stop="9706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9015" g_stop="9406" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E267103" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9015" e_stop="9406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCTGGTTGAACCATATTTTCTTAGTTTCTAACAGCAAGGTATAACAGCGAGACTCGAAAGCAAACATGAGATAATAATAAACGAAAATCACTCTTCTTTACTCTACTCCAGACAAGAGTTCTACAACTTTTATATATACAAAGCTCTGGAAACAAGCTGCAAATATTCCGCCCATAATTTTTCGCAAGCTAAAAGTTGCATCTACCAGCTCAAAACAAGTCGCTGACCAGCACTACCCTACAGAAGTATTTACAGAAAATGAAAAGACCCTCAACAACATCATGAGAACCGCAAGATAGTAAAGGAAAAACAAAACCTCCATAAATAAAACTTGCATGATAACAGGATACACCGTGCACCCCCTGTTAATGCATAAAGTCTAGACAGA</genome_strand>
        <mrna_strand>GAAACCTGGTTGAACCATATTTTCTTAGTTTCTAACAGCAAGGTATAACAGCGAGACTCGAAAGCAAACATGAGATAATAATAAACGAAAATCACTCTTCTTTACTCTACTCCAGACAAGAGTTCTACAACTTTTATATATACAAAGCTCTGGAAACAAGCTGCAAATATTCCGCCCATAATTTTTCGCAAGCTAAAAGTTGCATCTACCAGCTCAAAACAAGTCGCTGACCAGCACTACCCTACAGAAGTATTTACAGAAAATGAAAAGACCCTCAACAACATCATGAGAACCGCAAGATAGTAAAGGAAAAACAAAACCTCCATAAATAAAACTTGCATGATAACAGGATACACCGTGCACCCCCTGTTAATGCATAAAGTCTAGACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371499" ref_strand="+" ref_description="SGN-E371499 [TUS-29-F14](-)">
      <seq>ggtgaatgtcaagtctggtcttccagccaccactagcactgaaagattggaacttcttgatgatgaggagcacatccttggcatcagaatcgttggtggcgatcacaggctaaagaactattcttcggttattacagtccatccagagacacttgatggtagaccggggacactggtgattgagtcatttgtagtggatgtgcctgaagggaacactaaagaggagacttgctactttgtgaaggccttaattaattgcaatctgaaatcactagctgatgtatctgagaggatggctatgcagggaggtgttctacccgtcagtgtgaactggtcttcgagtaaccagatcgagatatgaaatctttggggctgtgtatagatttgcaagaagctaggtttcaacctctttggaatttgcttctgcttgtaatctgtctagactttatgcattaacagggggtgcacggtgtatcctgttatcatgcaagttttatttatggaggttttgtttttcctttactatcttgcggttctcatgatgttgttgagggtcttttcattttctgtaaatacttctgtagggtagtgctggtcagcgacttgttttgagctggtagatgcaacttttagcttgcgaaaaattatgggcggaatatttgcagcttgtttccagagctttgtatatataaaagttgtagaactcttgtctggagtagagtaaagaagagtgattttcgtttattattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="10836" stop="8790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10536" g_stop="10422" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10421" i_stop="9725" i_length="697">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9724" g_stop="9091" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="749" r_length="634" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E371499" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10536" e_stop="10422"/>
          <exon e_start="9724" e_stop="9091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAGGTATGAGTTTCCTCTAGAAGCACAATCCCTTAAATATGATGAAGCTGAAGATTTGCTAAATTTCAGTTACATTTTTAGCAGTATCCTACAGTAAAACAGTGTCCTGATGTCTATATAAGAGCATGTATATGGATTAAGAATGTTTAGTTTGAGGGTTGCTTCTTTGATGTAGGGGCAAGAGAGTGTTGTTTATACGACTTCGGACTTTCACTTGTTTATAAACGTTAACATGATCTTTAAACACCATGTTAGGGGCAAGGTCTACAATCTGCATACACACTACCCTCCCCGAACCACACTTGTGGGATTACATGAGGATGTGTTGTTGTTATTGACTTATTGTAGAAGTAACTTGTAACATGATTGTAAAATTTGTTCCTATCAATGTTAAGTTAAAAAGTTAAAAGATATCAAATGAATTGGTATTAGATGTAAAATTTGTTCATGATCGTAAAATTTGTTCATATCAATGTTAAGTTAACACGAGAATTGGCATACACACTACCCTCCCCGAACCAAGGTCCTGTAGTGTGTGGTAATTTTCATTCGGCTTTGCTCATTTAAGACTCTTGTTGCAATTTAATATCTCCAGAAGTCTTTTCTTAACTAAGCTGCTTTTTATATCTGCCTTTATATTAATACTGAGTAAAACATCTAGCATGTCTAACCTTGTGTTATAATGTATCAACTTTTGCAGAACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAAGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGGATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCGAGTAACCAGATCGAGATATGAAATCTTTGGGGCTGTGTATAGATTTGCAAGAAGCTAGGTTTCAACCTCTTTGGAATTTGCTTCTGCTTGTAATCTGTCTAGACTTTATGCATTAACAGGGGGTGCACGGTGTATCCTGTTATCATGCAAGTTTTATTTATGGAGGTTTTGTTTTTCCTTTACTATCTTGCGGTTCTCATGATGTTGTTGAGGGTCTTTTCATTTTCTGTAAATACTTCTGTAGGGTAGTGCTGGTCAGCGACTTGTTTTGAGCTGGTAGATGCAACTTTTAGCTTGCGAAAAATTATGGGCGGAATATTTGCAGCTTGTTTCCAGAGCTTTGTATATATAAAAGTTGTAGAACTCTTGTCTGGAGTAGAGTAAAGAAGAGTGATTTTCGTTTATTATT</genome_strand>
        <mrna_strand>GGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAAGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGGATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCGAGTAACCAGATCGAGATATGAAATCTTTGGGGCTGTGTATAGATTTGCAAGAAGCTAGGTTTCAACCTCTTTGGAATTTGCTTCTGCTTGTAATCTGTCTAGACTTTATGCATTAACAGGGGGTGCACGGTGTATCCTGTTATCATGCAAGTTTTATTTATGGAGGTTTTGTTTTTCCTTTACTATCTTGCGGTTCTCATGATGTTGTTGAGGGTCTTTTCATTTTCTGTAAATACTTCTGTAGGGTAGTGCTGGTCAGCGACTTGTTTTGAGCTGGTAGATGCAACTTTTAGCTTGCGAAAAATTATGGGCGGAATATTTGCAGCTTGTTTCCAGAGCTTTGTATATATAAAAGTTGTAGAACTCTTGTCTGGAGTAGAGTAAAGAAGAGTGATTTTCGTTTATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426589" ref_strand="+" ref_description="SGN-E426589 [STM-46-H4]">
      <seq>gggaaaatcactctttacctctctagtccagacaagagttctacaacttttatatatacaaagctctggaaactagctgcaaatattccgcccataattttcgcaagctaaaagttgcatctaccagctcaaaacaagtcgctgatcagcactaccctacagaagtatttacagaatatgaaaagaccctcaaactggtcatgagaaccgcaagatagtaaaggaaaacaaaacctccataaataaaacttgcatgataacaggatacaccatacacgccctgttgatgcataaaagtctagacagattacaagcagaagcaaatttcaaagaggctgaagcctagcttcttgcaaatctatgcatagccccaaagatttcatgtctcgatctggttactagaagaccagttcacactgacgggtagaacacctccctgcatagccattctctcagatacatcagctagtgatttcagattgcaattaattaaggccctcacaaagtagcaagtctcctctttagtgttcccttcaggcacatccactacaaatgactcaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="8819" stop="9963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9099" g_stop="9663" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E426589" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9099" e_stop="9663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAAATCACTCTTCTTTACTCTACTCCAGACAAGAGTTCTACAACTTTTATATATACAAAGCTCTGGAAACAAGCTGCAAATATTCCGCCCATAATTTTTCGCAAGCTAAAAGTTGCATCTACCAGCTCAAAACAAGTCGCTGACCAGCACTACCCTACAGAAGTATTTACAGAAAATGAAAAGACCCTCAACAACATCATGAGAACCGCAAGATAGTAAAGGAAAAACAAAACCTCCATAAATAAAACTTGCATGATAACAGGATACACCGTGCACCCCCTGTTAATGCAT-AAAGTCTAGACAGATTACAAGCAGAAGCAAATTCCAAAGAGGTTGAAACCTAGCTTCTTGCAAATCTATACACAGCCCCAAAGATTTCATATCTCGATCTGGTTACTCGAAGACCAGTTCACACTGACGGGTAGAACACCTCCCTGCATAGCCATCCTCTCAGATACATCAGCTAGTGATTTCAGATTGCAATTAATTAAGGCCTTCACAAAGTAGCAAGTCTCCTCTTTAGTGTTCCCTTCAGGCACATCCACTACAAATGACTCAATCA</genome_strand>
        <mrna_strand>GGGAAAATCACTCTTTACCTCTCTAGTCCAGACAAGAGTTCTACAACTTTTATATATACAAAGCTCTGGAAACTAGCTGCAAATATTCCGCCCATAA-TTTTCGCAAGCTAAAAGTTGCATCTACCAGCTCAAAACAAGTCGCTGATCAGCACTACCCTACAGAAGTATTTACAGAATATGAAAAGACCCTCAAACTGGTCATGAGAACCGCAAGATAGTAAAGG-AAAACAAAACCTCCATAAATAAAACTTGCATGATAACAGGATACACCATACACGCCCTGTTGATGCATAAAAGTCTAGACAGATTACAAGCAGAAGCAAATTTCAAAGAGGCTGAAGCCTAGCTTCTTGCAAATCTATGCATAGCCCCAAAGATTTCATGTCTCGATCTGGTTACTAGAAGACCAGTTCACACTGACGGGTAGAACACCTCCCTGCATAGCCATTCTCTCAGATACATCAGCTAGTGATTTCAGATTGCAATTAATTAAGGCCCTCACAAAGTAGCAAGTCTCCTCTTTAGTGTTCCCTTCAGGCACATCCACTACAAATGACTCAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426690" ref_strand="-" ref_description="SGN-E426690 [STM-47-C15]">
      <seq>agaagtataagccatttattagcaggtgtactgtgaagggtgatcttacaattggtagtgttagagaggtgaatgtcaagtctggtcttccagccaccactagcactgaaagattggaacttcttgatgatgaggagcacatccttggcatcagaatcgttggtggtgatcacaggctaaagaactattcttcgattattacagttcatccgaagacacttgatggtagaccggggacactggtgattgagtcatttgtagtggatgtgcctgaagggaacactaaagaggagacttgctactttgtgagggccttaattaattgcaatctgaaatcactagctgatgtatctgagagaatggctatgcagggaggtgttctacccgtcagtgtgaactggtcttctagtaaccagatcgagacatgaaatctttggggctatgcatagatttgcaagaagctaggcttcagcctctttgaaatttgcttctgcttgtaatctgtctagacttttatgcatcaacagggcgtgtatggtgtatcctgttatcatgcaagttttatttatggaggttttgttttcctttactatcttgcggttctcatgaccagtttgagggtcttttcatattctgtaaatacttctgtagggtagtgctgatcagcgacttgttttgagctggtagatgcaacttttagcttgcgaaaattatgggcggaatatttgcagcttgtttccagagctttgtatatataaaagttgtagaactcttgtctggactagaataaagaagagtgattttcctaaaaaaagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="10903" stop="8789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10603" g_stop="10422" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10421" i_stop="9725" i_length="697">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9724" g_stop="9101" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="805" r_length="623" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E426690" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426690" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10603" e_stop="10422"/>
          <exon e_start="9724" e_stop="9101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAGGTATGAGTTTCCTCTAGAAGCACAATCCCTTAAATATGATGAAGCTGAAGATTTGCTAAATTTCAGTTACATTTTTAGCAGTATCCTACAGTAAAACAGTGTCCTGATGTCTATATAAGAGCATGTATATGGATTAAGAATGTTTAGTTTGAGGGTTGCTTCTTTGATGTAGGGGCAAGAGAGTGTTGTTTATACGACTTCGGACTTTCACTTGTTTATAAACGTTAACATGATCTTTAAACACCATGTTAGGGGCAAGGTCTACAATCTGCATACACACTACCCTCCCCGAACCACACTTGTGGGATTACATGAGGATGTGTTGTTGTTATTGACTTATTGTAGAAGTAACTTGTAACATGATTGTAAAATTTGTTCCTATCAATGTTAAGTTAAAAAGTTAAAAGATATCAAATGAATTGGTATTAGATGTAAAATTTGTTCATGATCGTAAAATTTGTTCATATCAATGTTAAGTTAACACGAGAATTGGCATACACACTACCCTCCCCGAACCAAGGTCCTGTAGTGTGTGGTAATTTTCATTCGGCTTTGCTCATTTAAGACTCTTGTTGCAATTTAATATCTCCAGAAGTCTTTTCTTAACTAAGCTGCTTTTTATATCTGCCTTTATATTAATACTGAGTAAAACATCTAGCATGTCTAACCTTGTGTTATAATGTATCAACTTTTGCAGAACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAAGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGGATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCGAGTAACCAGATCGAGATATGAAATCTTTGGGGCTGTGTATAGATTTGCAAGAAGCTAGGTTTCAACCTCTTTGGAATTTGCTTCTGCTTGTAATCTGTCTAGAC-TTTATGCATTAACAGGGGGTGCACGGTGTATCCTGTTATCATGCAAGTTTTATTTATGGAGGTTTTGTTTTTCCTTTACTATCTTGCGGTTCTCATGATGTTGTTGAGGGTCTTTTCATTTTCTGTAAATACTTCTGTAGGGTAGTGCTGGTCAGCGACTTGTTTTGAGCTGGTAGATGCAACTTTTAGCTTGCGAAAAATTATGGGCGGAATATTTGCAGCTTGTTTCCAGAGCTTTGTATATATAAAAGTTGTAGAACTCTTGTCTGGAGTAGAGTAAAGAAGAGTGATTTTC</genome_strand>
        <mrna_strand>AGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGTGATCACAGGCTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATTCTTCGATTATTACAGTTCATCCGAAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAGGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGAATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCTAGTAACCAGATCGAGACATGAAATCTTTGGGGCTATGCATAGATTTGCAAGAAGCTAGGCTTCAGCCTCTTTGAAATTTGCTTCTGCTTGTAATCTGTCTAGACTTTTATGCATCAACAGGGCGTGTATGGTGTATCCTGTTATCATGCAAGTTTTATTTATGGAGGTTTTG-TTTTCCTTTACTATCTTGCGGTTCTCATGACCAGTTTGAGGGTCTTTTCATATTCTGTAAATACTTCTGTAGGGTAGTGCTGATCAGCGACTTGTTTTGAGCTGGTAGATGCAACTTTTAGCTTGCG-AAAATTATGGGCGGAATATTTGCAGCTTGTTTCCAGAGCTTTGTATATATAAAAGTTGTAGAACTCTTGTCTGGACTAGAATAAAGAAGAGTGATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462702" ref_strand="+" ref_description="SGN-E462702 [cPRO-12-O14]">
      <seq>gatgtatctgagagaatggctatgcagggaggtgttctacccgtcagtgtgaactggtcttctagtaaccagatcgagacatgaaatctttggggctatgcatagatttgcaagaagctaggcttcagcctctttgaaatttgcttctgcttttaatctgtctagacttttatgcatcaacagggcgtgtatggtgtatcctgttatcatgcaagttttatttatggaggttttgttttcttttactatcttgcggttctcatgatgatgtttgaggatcttttcatattctgtaaatacttctgtaaggtagtgctgaacagcgacttgttttgagctggtagatgcaacttttagcttgcgaaaattatgggcggaatatttgcagcttgtttccagagctttgtatatataaaagttgtagaactcttgtctggacttgagagtaaagaagagtgattttcctttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="9862" stop="8796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9562" g_stop="9101" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="469" polyA_stop="484"/>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E462702" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9562" e_stop="9101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTATCTGAGAGGATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCGAGTAACCAGATCGAGATATGAAATCTTTGGGGCTGTGTATAGATTTGCAAGAAGCTAGGTTTCAACCTCTTTGGAATTTGCTTCTGCTTGTAATCTGTCTAGAC-TTTATGCATTAACAGGGGGTGCACGGTGTATCCTGTTATCATGCAAGTTTTATTTATGGAGGTTTTGTTTTTCCTTTACTATCTTGCGGTTCTCATGATGTTG-TTGAGGGTCTTTTCATTTTCTGTAAATACTTCTGTAGGGTAGTGCTGGTCAGCGACTTGTTTTGAGCTGGTAGATGCAACTTTTAGCTTGCGAAAAATTATGGGCGGAATATTTGCAGCTTGTTTCCAGAGCTTTGTATATATAAAAGTTGTAGAACTCTTGTCTGGA-GT-AGAGTAAAGAAGAGTGATTTTC</genome_strand>
        <mrna_strand>GATGTATCTGAGAGAATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCTAGTAACCAGATCGAGACATGAAATCTTTGGGGCTATGCATAGATTTGCAAGAAGCTAGGCTTCAGCCTCTTTGAAATTTGCTTCTGCTTTTAATCTGTCTAGACTTTTATGCATCAACAGGGCGTGTATGGTGTATCCTGTTATCATGCAAGTTTTATTTATGGAGGTTTTG-TTTTCTTTTACTATCTTGCGGTTCTCATGATGATGTTTGAGGATCTTTTCATATTCTGTAAATACTTCTGTAAGGTAGTGCTGAACAGCGACTTGTTTTGAGCTGGTAGATGCAACTTTTAGCTTGCG-AAAATTATGGGCGGAATATTTGCAGCTTGTTTCCAGAGCTTTGTATATATAAAAGTTGTAGAACTCTTGTCTGGACTTGAGAGTAAAGAAGAGTGATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373516" ref_strand="+" ref_description="SGN-E373516 [TUS-31-H16](-)">
      <seq>tagcaggtgtactgtgaagggtgatcttacaattggtagtgttagagaggtgaatgtcaagtctggtcttccagccaccactagcactgaaagattggaacttcttgatgatgaaagccacatccttggcatcagaatcgttggtggcgatcacaggataaagaactattcttcggttattacagtccatccagagacacttgatggtagaccggggacactggtgattgagtcatttgtagtggatgtgcctgaagggaacactaaagaggagacttgctactttgtgaaggccttaattaattgcaatctgaaatcactagctgatgtatctgagaggatggctatgcagggaggtgttctacccgtcagtgtgaactggtcttcgagtaaccagatcgagatatgaaatctttggggctgtgtatagatttgcaagaagctaggtttcaacctctttggaatttgcttctgcttgtaatctgtctagactttatgcattaacagggggtgcacggtgtatcctgttatcatgcaagttttatttatggaggttttgtttttcctttactatcttgcggttctcatgatgttgttgagggtcttttcattttctgtaaatacttctgtagggtagtgctggtcagcgacttgttttgagctggtagatgcaacttttagcttgcgaaaaattatgggcggaatatttgcagcttgtttccagaggctttgtatatataaaagttgtagaactcttgtctggagtagagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="10884" stop="8810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10584" g_stop="10422" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10421" i_stop="9725" i_length="697">
            <donor d_prob="0.961" d_score="0.90"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9724" g_stop="9108" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="781" r_length="618" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E373516" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10584" e_stop="10422"/>
          <exon e_start="9724" e_stop="9108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAGGTATGAGTTTCCTCTAGAAGCACAATCCCTTAAATATGATGAAGCTGAAGATTTGCTAAATTTCAGTTACATTTTTAGCAGTATCCTACAGTAAAACAGTGTCCTGATGTCTATATAAGAGCATGTATATGGATTAAGAATGTTTAGTTTGAGGGTTGCTTCTTTGATGTAGGGGCAAGAGAGTGTTGTTTATACGACTTCGGACTTTCACTTGTTTATAAACGTTAACATGATCTTTAAACACCATGTTAGGGGCAAGGTCTACAATCTGCATACACACTACCCTCCCCGAACCACACTTGTGGGATTACATGAGGATGTGTTGTTGTTATTGACTTATTGTAGAAGTAACTTGTAACATGATTGTAAAATTTGTTCCTATCAATGTTAAGTTAAAAAGTTAAAAGATATCAAATGAATTGGTATTAGATGTAAAATTTGTTCATGATCGTAAAATTTGTTCATATCAATGTTAAGTTAACACGAGAATTGGCATACACACTACCCTCCCCGAACCAAGGTCCTGTAGTGTGTGGTAATTTTCATTCGGCTTTGCTCATTTAAGACTCTTGTTGCAATTTAATATCTCCAGAAGTCTTTTCTTAACTAAGCTGCTTTTTATATCTGCCTTTATATTAATACTGAGTAAAACATCTAGCATGTCTAACCTTGTGTTATAATGTATCAACTTTTGCAGAACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAAGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGGATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCGAGTAACCAGATCGAGATATGAAATCTTTGGGGCTGTGTATAGATTTGCAAGAAGCTAGGTTTCAACCTCTTTGGAATTTGCTTCTGCTTGTAATCTGTCTAGACTTTATGCATTAACAGGGGGTGCACGGTGTATCCTGTTATCATGCAAGTTTTATTTATGGAGGTTTTGTTTTTCCTTTACTATCTTGCGGTTCTCATGATGTTGTTGAGGGTCTTTTCATTTTCTGTAAATACTTCTGTAGGGTAGTGCTGGTCAGCGACTTGTTTTGAGCTGGTAGATGCAACTTTTAGCTTGCGAAAAATTATGGGCGGAATATTTGCAGCTTGTTTCCAGA-GCTTTGTATATATAAAAGTTGTAGAACTCTTGTCTGGAGTAGAGTAAAGAAGAGT</genome_strand>
        <mrna_strand>TAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAAAGCCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGATAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAAGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGGATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCGAGTAACCAGATCGAGATATGAAATCTTTGGGGCTGTGTATAGATTTGCAAGAAGCTAGGTTTCAACCTCTTTGGAATTTGCTTCTGCTTGTAATCTGTCTAGACTTTATGCATTAACAGGGGGTGCACGGTGTATCCTGTTATCATGCAAGTTTTATTTATGGAGGTTTTGTTTTTCCTTTACTATCTTGCGGTTCTCATGATGTTGTTGAGGGTCTTTTCATTTTCTGTAAATACTTCTGTAGGGTAGTGCTGGTCAGCGACTTGTTTTGAGCTGGTAGATGCAACTTTTAGCTTGCGAAAAATTATGGGCGGAATATTTGCAGCTTGTTTCCAGAGGCTTTGTATATATAAAAGTTGTAGAACTCTTGTCTGGAGTAGAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240458" ref_strand="-" ref_description="SGN-E240458 [cLED-21-M5]">
      <seq>cgtcagtgtgaactggtcttcgagtaaccagatcgagatatgaaatctttggggctgtgtatagatttgcaagaagctaggtttcaacctctttggaatttgcttctgcttgtaatctgtctagactttatgcattaacagggggtgcacggtgtatcctgttatcatgcaagttttatttatggaggttttgtttttcctttactatcttgcggttctcatgatgttgttgagggtcttttcattttctgtaaatacttctgtagggtagtgctggtcagcgacttgttttgagctggtagatgcaacttttagcttgcgaaaaattatgggcggaatatttgcagcttgtttccagagctttgtatatataaaagttgtagaactcttgtctggagtaaaaaaccaaaaaaaaaaaaaaaaaactcgagactagaaaatctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="9821" stop="8820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9521" g_stop="9120" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="408" polyA_stop="426"/>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E240458" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240458" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9521" e_stop="9120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAGTGTGAACTGGTCTTCGAGTAACCAGATCGAGATATGAAATCTTTGGGGCTGTGTATAGATTTGCAAGAAGCTAGGTTTCAACCTCTTTGGAATTTGCTTCTGCTTGTAATCTGTCTAGACTTTATGCATTAACAGGGGGTGCACGGTGTATCCTGTTATCATGCAAGTTTTATTTATGGAGGTTTTGTTTTTCCTTTACTATCTTGCGGTTCTCATGATGTTGTTGAGGGTCTTTTCATTTTCTGTAAATACTTCTGTAGGGTAGTGCTGGTCAGCGACTTGTTTTGAGCTGGTAGATGCAACTTTTAGCTTGCGAAAAATTATGGGCGGAATATTTGCAGCTTGTTTCCAGAGCTTTGTATATATAAAAGTTGTAGAACTCTTGTCTGGAGTAGA</genome_strand>
        <mrna_strand>CGTCAGTGTGAACTGGTCTTCGAGTAACCAGATCGAGATATGAAATCTTTGGGGCTGTGTATAGATTTGCAAGAAGCTAGGTTTCAACCTCTTTGGAATTTGCTTCTGCTTGTAATCTGTCTAGACTTTATGCATTAACAGGGGGTGCACGGTGTATCCTGTTATCATGCAAGTTTTATTTATGGAGGTTTTGTTTTTCCTTTACTATCTTGCGGTTCTCATGATGTTGTTGAGGGTCTTTTCATTTTCTGTAAATACTTCTGTAGGGTAGTGCTGGTCAGCGACTTGTTTTGAGCTGGTAGATGCAACTTTTAGCTTGCGAAAAATTATGGGCGGAATATTTGCAGCTTGTTTCCAGAGCTTTGTATATATAAAAGTTGTAGAACTCTTGTCTGGAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E575608" ref_strand="-" ref_description="SGN-E575608 [35259]">
      <seq>tgatcacaggctaaagaactattccttcgattattacagttcatccgaagacacttgatggtagaccggggacactggtgattgagtcatttgtagtggatgtgcctgaagggaacactaaagaggagacttgctactttgtgagggccttaattaattgcaatctgaaatcactagctgatgtatctgagagaatggctatgcagggaggtgttctacccgtcagtgtgaactggtcttctagtaaccagatcgagacatgaaatctttggggctatgcatagatttgcaagaagctaggcttcagcctctttgaaacttgcttctgcttttaatctgtctagacttttatgcatcaacagggcgtgtatggtgtatcctgttatcatgcaagttttatttatggaggttttgttttcttttactatcttgcggttctcatgatgatgtttgaggatcttttcatattctgtaaatacttctgtaaggtagtgctgaacagcgacttgttttgagctggtagatgcaacttttagcttgcgaaaattatgggcggaatatttgcagcttgtttccagagctttgtatatataaaagttgtagaactcttgtctggacttgagagtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="10026" stop="8819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9724" g_stop="9125" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="617" r_length="601" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="627" polyA_stop="640"/>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E575608" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575608" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9724" e_stop="9125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATT-CTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAAGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGGATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCGAGTAACCAGATCGAGATATGAAATCTTTGGGGCTGTGTATAGATTTGCAAGAAGCTAGGTTTCAACCTCTTTGGAATTTGCTTCTGCTTGTAATCTGTCTAGACTTT-ATGCATTAACAGGGGGTGCACGGTGTATCCTGTTATCATGCAAGTTTTATTTATGGAGGTTTTGTTTTTCCTTTACTATCTTGCGGTTCTCATGATGTTG-TTGAGGGTCTTTTCATTTTCTGTAAATACTTCTGTAGGGTAGTGCTGGTCAGCGACTTGTTTTGAGCTGGTAGATGCAACTTTTAGCTTGCGAAAAATTATGGGCGGAATATTTGCAGCTTGTTTCCAGAGCTTTGTATATATAAAAGTTGTAGAACTCTTGTCTGGA</genome_strand>
        <mrna_strand>AACTATTCCTTCGATTATTACAGTTCATCCGAAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAGGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGAATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCTAGTAACCAGATCGAGACATGAAATCTTTGGGGCTATGCATAGATTTGCAAGAAGCTAGGCTTCAGCCTCTTTGAAACTTGCTTCTGCTTTTAATCTGTCTAGACTTTTATGCATCAACAGGGCGTGTATGGTGTATCCTGTTATCATGCAAGTTTTATTTATGGAGGTTTTG-TTTTCTTTTACTATCTTGCGGTTCTCATGATGATGTTTGAGGATCTTTTCATATTCTGTAAATACTTCTGTAAGGTAGTGCTGAACAGCGACTTGTTTTGAGCTGGTAGATGCAACTTTTAGCTTGCG-AAAATTATGGGCGGAATATTTGCAGCTTGTTTCCAGAGCTTTGTATATATAAAAGTTGTAGAACTCTTGTCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723118" ref_strand="+" ref_description="SGN-E723118 [FC19BH05]">
      <seq>gagaaactttgaaggctttaaaagagaattttattgaaggaaatggaatcacagtttattgaaaaataccatagtcatcagcctagtgaacatcagtgttcttcatctcttgttaaacacatcaaagcaccagttgatattgtttggtcactagtgaggagatttgatcagcctcagaagtataagccatttattagcaggtgtactgtgaagggtgatcttacaattggtagtgttagagaggtgaatgtcaagtctggtcttccagccaccactagcactgaaagattggaacttcttgatgatgaggagcacatccttggcatcagaatcgttggtggcgatcacaggctaaagaactattcttcggttattacagtccatccggagacacttgatggtagaccggggacactggtgattgagtcatttgtagtggatgtgcctgaagggaacactaaagaggagacttgctactttgtgaaggccttaattaattgcaatctgaaatcactagctgatgtatctgagaggatggctatgcagggaggtgttctacccgtcagtgtgaactggtcttcgagtaaccagatcgagatatgaaatctttggggctgtgtatagatttgcaagaagctaggtttcaacctctttggaatttgcttctgcttgtaatctgtctagactttatgcattaacagggggtgcacggtgtatcctgttatcatgcaagttttatttatggaggttttgtttttcctttactatcttgcggttctcatgatgttgttgagggtcttttcattttctgaaaatacttctgtaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="11762" stop="8954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11463" g_stop="11323" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11322" i_stop="10638" i_length="685">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10637" g_stop="10422" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="357" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10421" i_stop="9725" i_length="697">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9724" g_stop="9254" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="828" r_length="471" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E723118" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11463" e_stop="11323"/>
          <exon e_start="10637" e_stop="10422"/>
          <exon e_start="9724" e_stop="9254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAACTTTGAAGGGTGTGAATTAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATTGTAAAAATCATATCTTTTTTAGAATTATTCTCTTGATTTCTTGATTTGGGAGTAATTTTTATTTTGTGGGGTTGGGGGTTCTTGAGGATTTCTCTTATTTATTTCTAGTTATACGACATTGGGTTTGTATAACATGATTGTATCTTTTTGTTCTATCTTTTCCTTATTTGTTGGGATACTAATCTTTTGGTTCCTTGTGTGTTTATTTGTGGAAAGTAATGTTTGTTTGGTAAGTTTTCTTTGAAAGGTTTTTTTTTTTCGAATTCCTAGCTAACTATTGGTGACTATGAAATTTGATCAGATTTTCGAAGTCTAATTAATTTCATATTCAAATATCTTTCAAGTTCCCAAAATCTGGATAGGATTTTTGGGACTTCCAATAAGAGAAATCTATGGTCAAACAGTAGCTTATCGAAAATCTTTCTTGGTTGAGGCAATTAATCTGTTTAGGAACCACTGAAGAAGCAGTTACAATATTAGTGTACTAAAAAGGAAAGTATAAGTTTTTGATGTGGATAGTTATCCTTCCTCAATTTACCATAAGATATCCTTTTAAAATATTTGGGGAATTCCAAGATTGTTGGGATGCATGATACTATTGAAATTTATGATCATTTTGTTAGTTTTTATTTTTCTTGTTTATTTGCAATTGAGTTCTAACATCTGATTGTTGATGTTGTTGTAGGTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAGGTATGAGTTTCCTCTAGAAGCACAATCCCTTAAATATGATGAAGCTGAAGATTTGCTAAATTTCAGTTACATTTTTAGCAGTATCCTACAGTAAAACAGTGTCCTGATGTCTATATAAGAGCATGTATATGGATTAAGAATGTTTAGTTTGAGGGTTGCTTCTTTGATGTAGGGGCAAGAGAGTGTTGTTTATACGACTTCGGACTTTCACTTGTTTATAAACGTTAACATGATCTTTAAACACCATGTTAGGGGCAAGGTCTACAATCTGCATACACACTACCCTCCCCGAACCACACTTGTGGGATTACATGAGGATGTGTTGTTGTTATTGACTTATTGTAGAAGTAACTTGTAACATGATTGTAAAATTTGTTCCTATCAATGTTAAGTTAAAAAGTTAAAAGATATCAAATGAATTGGTATTAGATGTAAAATTTGTTCATGATCGTAAAATTTGTTCATATCAATGTTAAGTTAACACGAGAATTGGCATACACACTACCCTCCCCGAACCAAGGTCCTGTAGTGTGTGGTAATTTTCATTCGGCTTTGCTCATTTAAGACTCTTGTTGCAATTTAATATCTCCAGAAGTCTTTTCTTAACTAAGCTGCTTTTTATATCTGCCTTTATATTAATACTGAGTAAAACATCTAGCATGTCTAACCTTGTGTTATAATGTATCAACTTTTGCAGAACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAAGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGGATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCGAGTAACCAGATCGAGATATGAAATCTTTGGGGCTGTGTATAGATTTGCAAGAAGCTAGGTTTCAACCTCTTTGGAATTTGCTTCTGCTTGTAATCTGTCTAGACTTTATGCATTAACAGGGGGTGCACGGTGTATCCTGTTATCATGCAAGTTTTATTTATGGAGGTTTTGTTTTTCCTTTACTATCTTGCGGTTCTCATGATGTTGTTGAGGGTCTTTTCATTTTCTGTAAATACTTCTGTAGGG</genome_strand>
        <mrna_strand>GAGAAACTTTGAAGGCTTTAAAAGAGAATTTTATTGAAGGAAATGGAATCACAGTTTATTGAAAAATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATTCTTCGGTTATTACAGTCCATCCGGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAAGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGGATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCGAGTAACCAGATCGAGATATGAAATCTTTGGGGCTGTGTATAGATTTGCAAGAAGCTAGGTTTCAACCTCTTTGGAATTTGCTTCTGCTTGTAATCTGTCTAGACTTTATGCATTAACAGGGGGTGCACGGTGTATCCTGTTATCATGCAAGTTTTATTTATGGAGGTTTTGTTTTTCCTTTACTATCTTGCGGTTCTCATGATGTTGTTGAGGGTCTTTTCATTTTCTGAAAATACTTCTGTAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389566" ref_strand="+" ref_description="SGN-E389566 [TUS-4-G6](-)">
      <seq>cggggacactggtgattgagtcatttgtagtggatgtgcctgaagggaacactaaagaggagacttgctactttgcgaaggccttaattaattgcaatctgaaatcactagctgatgtatctgagaggatggctatgcagggaggtgttctacccgtcagtgtgaactggtcttcgagtaaccagatcgagatatgaaatctttggggctgtgtatagatttgcaagaagctaggtttcaacctctttggaatttgcttctgcttgtaatctgtctagactttatgcattaacagggggtgcacggtgtatcctgttatcatgcaagttttatttatggaggttttgtttttcctttactatcttgcggttctcgtgaaattgttgagggtcttttcattttctgtaaatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="9975" stop="8962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9675" g_stop="9262" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E389566" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9675" e_stop="9262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAAGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGGATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCGAGTAACCAGATCGAGATATGAAATCTTTGGGGCTGTGTATAGATTTGCAAGAAGCTAGGTTTCAACCTCTTTGGAATTTGCTTCTGCTTGTAATCTGTCTAGACTTTATGCATTAACAGGGGGTGCACGGTGTATCCTGTTATCATGCAAGTTTTATTTATGGAGGTTTTGTTTTTCCTTTACTATCTTGCGGTTCTCATGATGTTGTTGAGGGTCTTTTCATTTTCTGTAAATACTT</genome_strand>
        <mrna_strand>CGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGCGAAGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGGATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCGAGTAACCAGATCGAGATATGAAATCTTTGGGGCTGTGTATAGATTTGCAAGAAGCTAGGTTTCAACCTCTTTGGAATTTGCTTCTGCTTGTAATCTGTCTAGACTTTATGCATTAACAGGGGGTGCACGGTGTATCCTGTTATCATGCAAGTTTTATTTATGGAGGTTTTGTTTTTCCTTTACTATCTTGCGGTTCTCGTGAAATTGTTGAGGGTCTTTTCATTTTCTGTAAATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331670" ref_strand="+" ref_description="SGN-E331670 [cTOD-7-K14]">
      <seq>agagaggagatttgatcagcctcagaagtataagccatttattagcaggtgtactgtgaagggtgatcttacaattggtagtgttagagaggtgaatgtcaagtctggtcttccagccaccactagcactgaaagattggaacttcttgatgatgaggagcacatccttggcatcagaatcgttggtggcgatcacaggctaaagaactattcttcggttattacagtccatccagagacacttgatggtagaccggggacactggtgattgagtcatttgtagtggatgtgcctgaagggaacactaaagaggagacttgctactttgtgaaggccttaattaattgcaatctgaaatcactagctgatgtatctgagaggatggctatgcagggaggtgttctacccgtcagtgtgaactggtcttcgagtaaccagatcgagatatgaaatctttggggctgtgtatagatttgcaagaagctaggtttcaacctctttggaatttgcttctgcttgtaatctgtctagactttatgcattaacagggggtgcacggtgtatcctgttatcatgcaagttttatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="10926" stop="9039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10626" g_stop="10422" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10421" i_stop="9725" i_length="697">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9724" g_stop="9339" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="591" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E331670" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10626" e_stop="10422"/>
          <exon e_start="9724" e_stop="9339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAGGTATGAGTTTCCTCTAGAAGCACAATCCCTTAAATATGATGAAGCTGAAGATTTGCTAAATTTCAGTTACATTTTTAGCAGTATCCTACAGTAAAACAGTGTCCTGATGTCTATATAAGAGCATGTATATGGATTAAGAATGTTTAGTTTGAGGGTTGCTTCTTTGATGTAGGGGCAAGAGAGTGTTGTTTATACGACTTCGGACTTTCACTTGTTTATAAACGTTAACATGATCTTTAAACACCATGTTAGGGGCAAGGTCTACAATCTGCATACACACTACCCTCCCCGAACCACACTTGTGGGATTACATGAGGATGTGTTGTTGTTATTGACTTATTGTAGAAGTAACTTGTAACATGATTGTAAAATTTGTTCCTATCAATGTTAAGTTAAAAAGTTAAAAGATATCAAATGAATTGGTATTAGATGTAAAATTTGTTCATGATCGTAAAATTTGTTCATATCAATGTTAAGTTAACACGAGAATTGGCATACACACTACCCTCCCCGAACCAAGGTCCTGTAGTGTGTGGTAATTTTCATTCGGCTTTGCTCATTTAAGACTCTTGTTGCAATTTAATATCTCCAGAAGTCTTTTCTTAACTAAGCTGCTTTTTATATCTGCCTTTATATTAATACTGAGTAAAACATCTAGCATGTCTAACCTTGTGTTATAATGTATCAACTTTTGCAGAACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAAGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGGATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCGAGTAACCAGATCGAGATATGAAATCTTTGGGGCTGTGTATAGATTTGCAAGAAGCTAGGTTTCAACCTCTTTGGAATTTGCTTCTGCTTGTAATCTGTCTAGACTTTATGCATTAACAGGGGGTGCACGGTGTATCCTGTTATCATGCAAGTTTTATTTAT</genome_strand>
        <mrna_strand>AGAGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAAGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGGATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCGAGTAACCAGATCGAGATATGAAATCTTTGGGGCTGTGTATAGATTTGCAAGAAGCTAGGTTTCAACCTCTTTGGAATTTGCTTCTGCTTGTAATCTGTCTAGACTTTATGCATTAACAGGGGGTGCACGGTGTATCCTGTTATCATGCAAGTTTTATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591917" ref_strand="+" ref_description="SGN-E591917 [45640]">
      <seq>taaccaatcaaccaccaccaattctcaatctctcaaatctctatttttatttatagagaacttttctaagttgggttaaaaagttagaaattttgaagtgtttgaattagaattgttgaaggaaatggaagcacagtttattgaaagataccatagtcatcagcctagtgaacatcagtgttcttcaactcttgtcaaacacatcaaagcaccagttgatattgtttggtcactagtgaggagatttgatcagcctcagaagtataagccatttattagcaggtgtactgtgaagggtgatcttacaattggtagtgttagagaggtgaatgtcaagtctggtcttccagccaccactagcactgaaagattggaacttcttgatgatgaggagcacatccttggcatcagaatcgttggtggtgatcacaggctaaagaactattcttcgattattacagttcatccgaagacacttgatggtagaccggggacactggtgattgagtcatttgtagtggatgtgcctgaagggaacactaaagaggagacttgctactttgtgagggccttaattaattgcaatctgaaatcactagctgatgtatctgagagaatggctatgcagggaggtgttctacccgtcagtgtgaactggtcttctagtaaccagatcgagacatgaaatctttggggctatgcatagatttgcaagaagctaggcttcagcctctttgaaatttgcttctgcttgtaatctgtctagactttttatgcatcaacagggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="11849" stop="9091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11549" g_stop="11323" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11322" i_stop="10638" i_length="685">
            <donor d_prob="0.770" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10637" g_stop="10422" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="439" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10421" i_stop="9725" i_length="697">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9724" g_stop="9377" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="789" r_length="350" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E591917" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11549" e_stop="11323"/>
          <exon e_start="10637" e_stop="10422"/>
          <exon e_start="9724" e_stop="9377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCAGCCAACCACCACCAATTCTCAATCTCTCAAATATATCTATTTTTATTTATAGAGAACTTTTCTAAGTTGGTTTAAAAAGTTAGAAACTTTGAAGGGTGTGAATTAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATTGTAAAAATCATATCTTTTTTAGAATTATTCTCTTGATTTCTTGATTTGGGAGTAATTTTTATTTTGTGGGGTTGGGGGTTCTTGAGGATTTCTCTTATTTATTTCTAGTTATACGACATTGGGTTTGTATAACATGATTGTATCTTTTTGTTCTATCTTTTCCTTATTTGTTGGGATACTAATCTTTTGGTTCCTTGTGTGTTTATTTGTGGAAAGTAATGTTTGTTTGGTAAGTTTTCTTTGAAAGGTTTTTTTTTTTCGAATTCCTAGCTAACTATTGGTGACTATGAAATTTGATCAGATTTTCGAAGTCTAATTAATTTCATATTCAAATATCTTTCAAGTTCCCAAAATCTGGATAGGATTTTTGGGACTTCCAATAAGAGAAATCTATGGTCAAACAGTAGCTTATCGAAAATCTTTCTTGGTTGAGGCAATTAATCTGTTTAGGAACCACTGAAGAAGCAGTTACAATATTAGTGTACTAAAAAGGAAAGTATAAGTTTTTGATGTGGATAGTTATCCTTCCTCAATTTACCATAAGATATCCTTTTAAAATATTTGGGGAATTCCAAGATTGTTGGGATGCATGATACTATTGAAATTTATGATCATTTTGTTAGTTTTTATTTTTCTTGTTTATTTGCAATTGAGTTCTAACATCTGATTGTTGATGTTGTTGTAGGTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAGGTATGAGTTTCCTCTAGAAGCACAATCCCTTAAATATGATGAAGCTGAAGATTTGCTAAATTTCAGTTACATTTTTAGCAGTATCCTACAGTAAAACAGTGTCCTGATGTCTATATAAGAGCATGTATATGGATTAAGAATGTTTAGTTTGAGGGTTGCTTCTTTGATGTAGGGGCAAGAGAGTGTTGTTTATACGACTTCGGACTTTCACTTGTTTATAAACGTTAACATGATCTTTAAACACCATGTTAGGGGCAAGGTCTACAATCTGCATACACACTACCCTCCCCGAACCACACTTGTGGGATTACATGAGGATGTGTTGTTGTTATTGACTTATTGTAGAAGTAACTTGTAACATGATTGTAAAATTTGTTCCTATCAATGTTAAGTTAAAAAGTTAAAAGATATCAAATGAATTGGTATTAGATGTAAAATTTGTTCATGATCGTAAAATTTGTTCATATCAATGTTAAGTTAACACGAGAATTGGCATACACACTACCCTCCCCGAACCAAGGTCCTGTAGTGTGTGGTAATTTTCATTCGGCTTTGCTCATTTAAGACTCTTGTTGCAATTTAATATCTCCAGAAGTCTTTTCTTAACTAAGCTGCTTTTTATATCTGCCTTTATATTAATACTGAGTAAAACATCTAGCATGTCTAACCTTGTGTTATAATGTATCAACTTTTGCAGAACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAAGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGGATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCGAGTAACCAGATCGAGATATGAAATCTTTGGGGCTGTGTATAGATTTGCAAGAAGCTAGGTTTCAACCTCTTTGGAATTTGCTTCTGCTTGTAATCTGTCTAGAC--TTTATGCATTAACAGGGGG</genome_strand>
        <mrna_strand>TAACCAATCAACCACCACCAATTCTCAATCTCTC-AA-ATCTCTATTTTTATTTATAGAGAACTTTTCTAAGTTGGGTTAAAAAGTTAGAAATTTTGAAGTGTTTGAATTAGAA--TTGTTGAAGGAAATGGAAGCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCAACTCTTGTCAAACACATCAAAGCACCAGTTGATATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGTGATCACAGGCTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATTCTTCGATTATTACAGTTCATCCGAAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAGGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGAATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCTAGTAACCAGATCGAGACATGAAATCTTTGGGGCTATGCATAGATTTGCAAGAAGCTAGGCTTCAGCCTCTTTGAAATTTGCTTCTGCTTGTAATCTGTCTAGACTTTTTATGCATCAACAGGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340030" ref_strand="+" ref_description="SGN-E340030 [cTOF-3-K4]">
      <seq>accaattctcaatctctcaaatatatctatttttatttatagagaacttttctaagttggtttaaaaagttagaaactttgaagggtgtgaattagaattttattgaagtaaatggaatcacagtttattgaaagataccatagtcatcagcctagtgaacatcagtgttcttcatctcttgttaaacacatcaaagcaccagttgatattgtttggtcactagtgaggagatttgatcagcctcagaagtataagccatttattagcaggtgtactgtgaagggtgatcttacaattggtagtgttagagaggtgaatgtcaagtctggtcttccagccaccactagcactgaaagattggaacttcttgatgatgaggagcacatccttggcatcagaatcgttggtggcgatcacaggctaaagaactattcttcggttattacagtccatccagagacacttgatggtagaccggggacactggtgattgagtcatttgtagtggatgtgcctgaagggaacactaaagaggagacttgctactttgtgaaggccttaattaattgcaatctgaaatcactagctgatgtatctgagaggatggctatgcagggnaggtgttctacccgtcagtgtgaactggtcttcgagtaaccagatcgagatatgaaatctttggggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="11833" stop="9166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11533" g_stop="11323" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11322" i_stop="10638" i_length="685">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10637" g_stop="10422" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="427" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10421" i_stop="9725" i_length="697">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9724" g_stop="9466" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="687" r_length="260" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E340030" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11533" e_stop="11323"/>
          <exon e_start="10637" e_stop="10422"/>
          <exon e_start="9724" e_stop="9466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATTCTCAATCTCTCAAATATATCTATTTTTATTTATAGAGAACTTTTCTAAGTTGGTTTAAAAAGTTAGAAACTTTGAAGGGTGTGAATTAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATTGTAAAAATCATATCTTTTTTAGAATTATTCTCTTGATTTCTTGATTTGGGAGTAATTTTTATTTTGTGGGGTTGGGGGTTCTTGAGGATTTCTCTTATTTATTTCTAGTTATACGACATTGGGTTTGTATAACATGATTGTATCTTTTTGTTCTATCTTTTCCTTATTTGTTGGGATACTAATCTTTTGGTTCCTTGTGTGTTTATTTGTGGAAAGTAATGTTTGTTTGGTAAGTTTTCTTTGAAAGGTTTTTTTTTTTCGAATTCCTAGCTAACTATTGGTGACTATGAAATTTGATCAGATTTTCGAAGTCTAATTAATTTCATATTCAAATATCTTTCAAGTTCCCAAAATCTGGATAGGATTTTTGGGACTTCCAATAAGAGAAATCTATGGTCAAACAGTAGCTTATCGAAAATCTTTCTTGGTTGAGGCAATTAATCTGTTTAGGAACCACTGAAGAAGCAGTTACAATATTAGTGTACTAAAAAGGAAAGTATAAGTTTTTGATGTGGATAGTTATCCTTCCTCAATTTACCATAAGATATCCTTTTAAAATATTTGGGGAATTCCAAGATTGTTGGGATGCATGATACTATTGAAATTTATGATCATTTTGTTAGTTTTTATTTTTCTTGTTTATTTGCAATTGAGTTCTAACATCTGATTGTTGATGTTGTTGTAGGTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAGGTATGAGTTTCCTCTAGAAGCACAATCCCTTAAATATGATGAAGCTGAAGATTTGCTAAATTTCAGTTACATTTTTAGCAGTATCCTACAGTAAAACAGTGTCCTGATGTCTATATAAGAGCATGTATATGGATTAAGAATGTTTAGTTTGAGGGTTGCTTCTTTGATGTAGGGGCAAGAGAGTGTTGTTTATACGACTTCGGACTTTCACTTGTTTATAAACGTTAACATGATCTTTAAACACCATGTTAGGGGCAAGGTCTACAATCTGCATACACACTACCCTCCCCGAACCACACTTGTGGGATTACATGAGGATGTGTTGTTGTTATTGACTTATTGTAGAAGTAACTTGTAACATGATTGTAAAATTTGTTCCTATCAATGTTAAGTTAAAAAGTTAAAAGATATCAAATGAATTGGTATTAGATGTAAAATTTGTTCATGATCGTAAAATTTGTTCATATCAATGTTAAGTTAACACGAGAATTGGCATACACACTACCCTCCCCGAACCAAGGTCCTGTAGTGTGTGGTAATTTTCATTCGGCTTTGCTCATTTAAGACTCTTGTTGCAATTTAATATCTCCAGAAGTCTTTTCTTAACTAAGCTGCTTTTTATATCTGCCTTTATATTAATACTGAGTAAAACATCTAGCATGTCTAACCTTGTGTTATAATGTATCAACTTTTGCAGAACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAAGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGGATGGCTATGCAGGG-AGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCGAGTAACCAGATCGAGATATGAAATCTTTGGGGCT</genome_strand>
        <mrna_strand>ACCAATTCTCAATCTCTCAAATATATCTATTTTTATTTATAGAGAACTTTTCTAAGTTGGTTTAAAAAGTTAGAAACTTTGAAGGGTGTGAATTAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAAGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGGATGGCTATGCAGGGNAGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCGAGTAACCAGATCGAGATATGAAATCTTTGGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371500" ref_strand="+" ref_description="SGN-E371500 [TUS-29-F14]">
      <seq>tttatttatagagaacttttctaagttggtttaaaaagttagaaactttgaagggtgtgaattagaattttattgaagtaaatggaatcacagtttattgaaagataccatagtcatcagcctagtgaacatcagtgttcttcatctcttgttaaacacatcaaagcaccagttgatattgtttggtcactagtgaggagatttgatcagcctcagaagtataagccatttattagcaggtgtactgtgaagggtgatcttacaattggtagtgttagagaggtgaatgtcaagtctggtcttccagccaccactagcactgaaagattggaacttcttgatgatgaggagcacatccttggcatcagaatcgttggtggcgatcacaggctaaagaactattcttcggttattacagtccatccagagacacttgatggtagaccggggacactggtgattgagtcatttgtagtggatgtgcctgaagggaacactaaagaggagacttgctactttgtgaaggccttaattaattgcaatctgaaatcactagctgatgtatctgagaggatggctatgcagggaggtgttctacccgtcagtgtgaactggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="11802" stop="9204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11502" g_stop="11323" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11322" i_stop="10638" i_length="685">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10637" g_stop="10422" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="396" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10421" i_stop="9725" i_length="697">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9724" g_stop="9504" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="617" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E371500" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11502" e_stop="11323"/>
          <exon e_start="10637" e_stop="10422"/>
          <exon e_start="9724" e_stop="9504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTATAGAGAACTTTTCTAAGTTGGTTTAAAAAGTTAGAAACTTTGAAGGGTGTGAATTAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATTGTAAAAATCATATCTTTTTTAGAATTATTCTCTTGATTTCTTGATTTGGGAGTAATTTTTATTTTGTGGGGTTGGGGGTTCTTGAGGATTTCTCTTATTTATTTCTAGTTATACGACATTGGGTTTGTATAACATGATTGTATCTTTTTGTTCTATCTTTTCCTTATTTGTTGGGATACTAATCTTTTGGTTCCTTGTGTGTTTATTTGTGGAAAGTAATGTTTGTTTGGTAAGTTTTCTTTGAAAGGTTTTTTTTTTTCGAATTCCTAGCTAACTATTGGTGACTATGAAATTTGATCAGATTTTCGAAGTCTAATTAATTTCATATTCAAATATCTTTCAAGTTCCCAAAATCTGGATAGGATTTTTGGGACTTCCAATAAGAGAAATCTATGGTCAAACAGTAGCTTATCGAAAATCTTTCTTGGTTGAGGCAATTAATCTGTTTAGGAACCACTGAAGAAGCAGTTACAATATTAGTGTACTAAAAAGGAAAGTATAAGTTTTTGATGTGGATAGTTATCCTTCCTCAATTTACCATAAGATATCCTTTTAAAATATTTGGGGAATTCCAAGATTGTTGGGATGCATGATACTATTGAAATTTATGATCATTTTGTTAGTTTTTATTTTTCTTGTTTATTTGCAATTGAGTTCTAACATCTGATTGTTGATGTTGTTGTAGGTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAGGTATGAGTTTCCTCTAGAAGCACAATCCCTTAAATATGATGAAGCTGAAGATTTGCTAAATTTCAGTTACATTTTTAGCAGTATCCTACAGTAAAACAGTGTCCTGATGTCTATATAAGAGCATGTATATGGATTAAGAATGTTTAGTTTGAGGGTTGCTTCTTTGATGTAGGGGCAAGAGAGTGTTGTTTATACGACTTCGGACTTTCACTTGTTTATAAACGTTAACATGATCTTTAAACACCATGTTAGGGGCAAGGTCTACAATCTGCATACACACTACCCTCCCCGAACCACACTTGTGGGATTACATGAGGATGTGTTGTTGTTATTGACTTATTGTAGAAGTAACTTGTAACATGATTGTAAAATTTGTTCCTATCAATGTTAAGTTAAAAAGTTAAAAGATATCAAATGAATTGGTATTAGATGTAAAATTTGTTCATGATCGTAAAATTTGTTCATATCAATGTTAAGTTAACACGAGAATTGGCATACACACTACCCTCCCCGAACCAAGGTCCTGTAGTGTGTGGTAATTTTCATTCGGCTTTGCTCATTTAAGACTCTTGTTGCAATTTAATATCTCCAGAAGTCTTTTCTTAACTAAGCTGCTTTTTATATCTGCCTTTATATTAATACTGAGTAAAACATCTAGCATGTCTAACCTTGTGTTATAATGTATCAACTTTTGCAGAACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAAGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGGATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTC</genome_strand>
        <mrna_strand>TTTATTTATAGAGAACTTTTCTAAGTTGGTTTAAAAAGTTAGAAACTTTGAAGGGTGTGAATTAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAAGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGGATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283018" ref_strand="+" ref_description="SGN-E283018 [cLER-17-D21]">
      <seq>agttagaaactttgaagggtgtgaattagaattttattgaagtaaatggaatcacagtttattgaaagataccatagtcatcagcctagtgaacatcagtgttcttcatctcttgttaaacacatcaaagcaccagttgatattgtttggtcactagtgaggagatttgatcagcctcagaagtataagccatttattagcaggtgtactgtgaagggtgatcttacaattggtagtgttagagaggtgaatgtcaagtctggtcttccagccaccactagcactgaaagattggaacttcttgatgatgaggagcacatccttggcatcagaatcgttggtggcgatcacaggctaaagaactattcttcggttattacagtccatccagagacacttgatggtagaccggggacactggtgattgagtcatttgtagtggatgtgcctgaagggaacactaaagaggagacttgctactttgtgaaggccttaattaattgcaatctgaaatcactagctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="11766" stop="9259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11466" g_stop="11323" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11322" i_stop="10638" i_length="685">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10637" g_stop="10422" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="360" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10421" i_stop="9725" i_length="697">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9724" g_stop="9559" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="526" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E283018" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11466" e_stop="11323"/>
          <exon e_start="10637" e_stop="10422"/>
          <exon e_start="9724" e_stop="9559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAGAAACTTTGAAGGGTGTGAATTAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATTGTAAAAATCATATCTTTTTTAGAATTATTCTCTTGATTTCTTGATTTGGGAGTAATTTTTATTTTGTGGGGTTGGGGGTTCTTGAGGATTTCTCTTATTTATTTCTAGTTATACGACATTGGGTTTGTATAACATGATTGTATCTTTTTGTTCTATCTTTTCCTTATTTGTTGGGATACTAATCTTTTGGTTCCTTGTGTGTTTATTTGTGGAAAGTAATGTTTGTTTGGTAAGTTTTCTTTGAAAGGTTTTTTTTTTTCGAATTCCTAGCTAACTATTGGTGACTATGAAATTTGATCAGATTTTCGAAGTCTAATTAATTTCATATTCAAATATCTTTCAAGTTCCCAAAATCTGGATAGGATTTTTGGGACTTCCAATAAGAGAAATCTATGGTCAAACAGTAGCTTATCGAAAATCTTTCTTGGTTGAGGCAATTAATCTGTTTAGGAACCACTGAAGAAGCAGTTACAATATTAGTGTACTAAAAAGGAAAGTATAAGTTTTTGATGTGGATAGTTATCCTTCCTCAATTTACCATAAGATATCCTTTTAAAATATTTGGGGAATTCCAAGATTGTTGGGATGCATGATACTATTGAAATTTATGATCATTTTGTTAGTTTTTATTTTTCTTGTTTATTTGCAATTGAGTTCTAACATCTGATTGTTGATGTTGTTGTAGGTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAGGTATGAGTTTCCTCTAGAAGCACAATCCCTTAAATATGATGAAGCTGAAGATTTGCTAAATTTCAGTTACATTTTTAGCAGTATCCTACAGTAAAACAGTGTCCTGATGTCTATATAAGAGCATGTATATGGATTAAGAATGTTTAGTTTGAGGGTTGCTTCTTTGATGTAGGGGCAAGAGAGTGTTGTTTATACGACTTCGGACTTTCACTTGTTTATAAACGTTAACATGATCTTTAAACACCATGTTAGGGGCAAGGTCTACAATCTGCATACACACTACCCTCCCCGAACCACACTTGTGGGATTACATGAGGATGTGTTGTTGTTATTGACTTATTGTAGAAGTAACTTGTAACATGATTGTAAAATTTGTTCCTATCAATGTTAAGTTAAAAAGTTAAAAGATATCAAATGAATTGGTATTAGATGTAAAATTTGTTCATGATCGTAAAATTTGTTCATATCAATGTTAAGTTAACACGAGAATTGGCATACACACTACCCTCCCCGAACCAAGGTCCTGTAGTGTGTGGTAATTTTCATTCGGCTTTGCTCATTTAAGACTCTTGTTGCAATTTAATATCTCCAGAAGTCTTTTCTTAACTAAGCTGCTTTTTATATCTGCCTTTATATTAATACTGAGTAAAACATCTAGCATGTCTAACCTTGTGTTATAATGTATCAACTTTTGCAGAACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAAGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATG</genome_strand>
        <mrna_strand>AGTTAGAAACTTTGAAGGGTGTGAATTAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAAGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204763" ref_strand="+" ref_description="SGN-E204763 [cLEC-14-C3]">
      <seq>caattctcaatctctcaaatatatctatttttatttatagagaacttttctaagttggtttaaaaagttagaaactttgaagggtgtgaattagaattttattgaagtaaatggaatcacagtttattgaaagataccatagtcatcagcctagtgaacatcagtgttcttcatctcttgttaaacacatcaaagcaccagttgatattgtttggtcactagtgaggagatttgatcagcctcagaagtataagccatttattagcaggtgtactgtgaagggtgatcttacaattggtagtgttagagaggtgaatgtcaagtctggtcttccagccaccactagcactgaaagattggaacttcttgatgatgaggagcacatccttggcatcagaatcgttggtggcgatcacaggctaaagaactattcttcggttattacagtccatccagagacacttgatggtagaccggggacactggtgattgagtcatttgtagtggatgtgcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="11831" stop="9333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11531" g_stop="11323" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11322" i_stop="10638" i_length="685">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10637" g_stop="10422" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="425" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10421" i_stop="9725" i_length="697">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9724" g_stop="9633" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="517" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E204763" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11531" e_stop="11323"/>
          <exon e_start="10637" e_stop="10422"/>
          <exon e_start="9724" e_stop="9633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCTCAATCTCTCAAATATATCTATTTTTATTTATAGAGAACTTTTCTAAGTTGGTTTAAAAAGTTAGAAACTTTGAAGGGTGTGAATTAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATTGTAAAAATCATATCTTTTTTAGAATTATTCTCTTGATTTCTTGATTTGGGAGTAATTTTTATTTTGTGGGGTTGGGGGTTCTTGAGGATTTCTCTTATTTATTTCTAGTTATACGACATTGGGTTTGTATAACATGATTGTATCTTTTTGTTCTATCTTTTCCTTATTTGTTGGGATACTAATCTTTTGGTTCCTTGTGTGTTTATTTGTGGAAAGTAATGTTTGTTTGGTAAGTTTTCTTTGAAAGGTTTTTTTTTTTCGAATTCCTAGCTAACTATTGGTGACTATGAAATTTGATCAGATTTTCGAAGTCTAATTAATTTCATATTCAAATATCTTTCAAGTTCCCAAAATCTGGATAGGATTTTTGGGACTTCCAATAAGAGAAATCTATGGTCAAACAGTAGCTTATCGAAAATCTTTCTTGGTTGAGGCAATTAATCTGTTTAGGAACCACTGAAGAAGCAGTTACAATATTAGTGTACTAAAAAGGAAAGTATAAGTTTTTGATGTGGATAGTTATCCTTCCTCAATTTACCATAAGATATCCTTTTAAAATATTTGGGGAATTCCAAGATTGTTGGGATGCATGATACTATTGAAATTTATGATCATTTTGTTAGTTTTTATTTTTCTTGTTTATTTGCAATTGAGTTCTAACATCTGATTGTTGATGTTGTTGTAGGTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAGGTATGAGTTTCCTCTAGAAGCACAATCCCTTAAATATGATGAAGCTGAAGATTTGCTAAATTTCAGTTACATTTTTAGCAGTATCCTACAGTAAAACAGTGTCCTGATGTCTATATAAGAGCATGTATATGGATTAAGAATGTTTAGTTTGAGGGTTGCTTCTTTGATGTAGGGGCAAGAGAGTGTTGTTTATACGACTTCGGACTTTCACTTGTTTATAAACGTTAACATGATCTTTAAACACCATGTTAGGGGCAAGGTCTACAATCTGCATACACACTACCCTCCCCGAACCACACTTGTGGGATTACATGAGGATGTGTTGTTGTTATTGACTTATTGTAGAAGTAACTTGTAACATGATTGTAAAATTTGTTCCTATCAATGTTAAGTTAAAAAGTTAAAAGATATCAAATGAATTGGTATTAGATGTAAAATTTGTTCATGATCGTAAAATTTGTTCATATCAATGTTAAGTTAACACGAGAATTGGCATACACACTACCCTCCCCGAACCAAGGTCCTGTAGTGTGTGGTAATTTTCATTCGGCTTTGCTCATTTAAGACTCTTGTTGCAATTTAATATCTCCAGAAGTCTTTTCTTAACTAAGCTGCTTTTTATATCTGCCTTTATATTAATACTGAGTAAAACATCTAGCATGTCTAACCTTGTGTTATAATGTATCAACTTTTGCAGAACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGA</genome_strand>
        <mrna_strand>CAATTCTCAATCTCTCAAATATATCTATTTTTATTTATAGAGAACTTTTCTAAGTTGGTTTAAAAAGTTAGAAACTTTGAAGGGTGTGAATTAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265503" ref_strand="+" ref_description="SGN-E265503 [cLEI-14-G22]">
      <seq>tgaagggtgtgaattagaattttattgaagtaaatggaatcacagtttattgaaagataccatagtcatcagcctagtgaacatcagtgttcttcatctcttgttaaacacatcaaagcaccagttgatattgtttggtcactagtgaggagatttgatcagcctcagaagtataagccatttattagcaggtgtactgtgaagggtgatcttacaattggtagtgatagagaggtgaatgtcaagtctggtcttccagccaccactagcactgaaagattggaacttcttgatgatgaggagcacatccttggcatcagaatcgtaggtggcgatcacaggctaaagaactattcttcggttattacagtccatccagagacacttgatggtagaccggggacactggtgattgagtcatatgtagaggatgtgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="11754" stop="9335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11454" g_stop="11323" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11322" i_stop="10638" i_length="685">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10637" g_stop="10422" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="348" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10421" i_stop="9725" i_length="697">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9724" g_stop="9635" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="438" r_length="90" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E265503" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11454" e_stop="11323"/>
          <exon e_start="10637" e_stop="10422"/>
          <exon e_start="9724" e_stop="9635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGGGTGTGAATTAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATTGTAAAAATCATATCTTTTTTAGAATTATTCTCTTGATTTCTTGATTTGGGAGTAATTTTTATTTTGTGGGGTTGGGGGTTCTTGAGGATTTCTCTTATTTATTTCTAGTTATACGACATTGGGTTTGTATAACATGATTGTATCTTTTTGTTCTATCTTTTCCTTATTTGTTGGGATACTAATCTTTTGGTTCCTTGTGTGTTTATTTGTGGAAAGTAATGTTTGTTTGGTAAGTTTTCTTTGAAAGGTTTTTTTTTTTCGAATTCCTAGCTAACTATTGGTGACTATGAAATTTGATCAGATTTTCGAAGTCTAATTAATTTCATATTCAAATATCTTTCAAGTTCCCAAAATCTGGATAGGATTTTTGGGACTTCCAATAAGAGAAATCTATGGTCAAACAGTAGCTTATCGAAAATCTTTCTTGGTTGAGGCAATTAATCTGTTTAGGAACCACTGAAGAAGCAGTTACAATATTAGTGTACTAAAAAGGAAAGTATAAGTTTTTGATGTGGATAGTTATCCTTCCTCAATTTACCATAAGATATCCTTTTAAAATATTTGGGGAATTCCAAGATTGTTGGGATGCATGATACTATTGAAATTTATGATCATTTTGTTAGTTTTTATTTTTCTTGTTTATTTGCAATTGAGTTCTAACATCTGATTGTTGATGTTGTTGTAGGTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAGGTATGAGTTTCCTCTAGAAGCACAATCCCTTAAATATGATGAAGCTGAAGATTTGCTAAATTTCAGTTACATTTTTAGCAGTATCCTACAGTAAAACAGTGTCCTGATGTCTATATAAGAGCATGTATATGGATTAAGAATGTTTAGTTTGAGGGTTGCTTCTTTGATGTAGGGGCAAGAGAGTGTTGTTTATACGACTTCGGACTTTCACTTGTTTATAAACGTTAACATGATCTTTAAACACCATGTTAGGGGCAAGGTCTACAATCTGCATACACACTACCCTCCCCGAACCACACTTGTGGGATTACATGAGGATGTGTTGTTGTTATTGACTTATTGTAGAAGTAACTTGTAACATGATTGTAAAATTTGTTCCTATCAATGTTAAGTTAAAAAGTTAAAAGATATCAAATGAATTGGTATTAGATGTAAAATTTGTTCATGATCGTAAAATTTGTTCATATCAATGTTAAGTTAACACGAGAATTGGCATACACACTACCCTCCCCGAACCAAGGTCCTGTAGTGTGTGGTAATTTTCATTCGGCTTTGCTCATTTAAGACTCTTGTTGCAATTTAATATCTCCAGAAGTCTTTTCTTAACTAAGCTGCTTTTTATATCTGCCTTTATATTAATACTGAGTAAAACATCTAGCATGTCTAACCTTGTGTTATAATGTATCAACTTTTGCAGAACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCT</genome_strand>
        <mrna_strand>TGAAGGGTGTGAATTAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGATAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTAGGTGGCGATCACAGGCTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATATGTAGAGGATGTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280546" ref_strand="+" ref_description="SGN-E280546 [cLER-1-E8]">
      <seq>tttatttatagagaacttttctaagttggtttaaaaagttagaaactttgaagggtgtgaattagaattatattgaagtaaatggaatcacaggttattgaaagataccatagacattagcctagtgaacatcagtgttcttcatctcttgttaaacacatcaaagcaccaggtgatattgtttggtcactagtgaggagatttgatcatcctcacaagtataagccatttattagcaggtgtactgagaagggtgatcttacaattggtagcgttacgagaggtgaatgttatgtctggtcttacagccaccactagcactgaaagactggaacttcttgatgatgaggagcacatccttggcatcagaatcgttggaggtgatcacaggctagagaactattattcgggtattacagtccatccagagacacttgatggtagacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="11802" stop="9375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11502" g_stop="11323" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11322" i_stop="10638" i_length="685">
            <donor d_prob="0.770" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10637" g_stop="10422" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="397" r_length="217" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10421" i_stop="9725" i_length="697">
            <donor d_prob="0.961" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9724" g_stop="9675" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="447" r_length="50" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E280546" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11502" e_stop="11323"/>
          <exon e_start="10637" e_stop="10422"/>
          <exon e_start="9724" e_stop="9675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTATAGAGAACTTTTCTAAGTTGGTTTAAAAAGTTAGAAACTTTGAAGGGTGTGAATTAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATTGTAAAAATCATATCTTTTTTAGAATTATTCTCTTGATTTCTTGATTTGGGAGTAATTTTTATTTTGTGGGGTTGGGGGTTCTTGAGGATTTCTCTTATTTATTTCTAGTTATACGACATTGGGTTTGTATAACATGATTGTATCTTTTTGTTCTATCTTTTCCTTATTTGTTGGGATACTAATCTTTTGGTTCCTTGTGTGTTTATTTGTGGAAAGTAATGTTTGTTTGGTAAGTTTTCTTTGAAAGGTTTTTTTTTTTCGAATTCCTAGCTAACTATTGGTGACTATGAAATTTGATCAGATTTTCGAAGTCTAATTAATTTCATATTCAAATATCTTTCAAGTTCCCAAAATCTGGATAGGATTTTTGGGACTTCCAATAAGAGAAATCTATGGTCAAACAGTAGCTTATCGAAAATCTTTCTTGGTTGAGGCAATTAATCTGTTTAGGAACCACTGAAGAAGCAGTTACAATATTAGTGTACTAAAAAGGAAAGTATAAGTTTTTGATGTGGATAGTTATCCTTCCTCAATTTACCATAAGATATCCTTTTAAAATATTTGGGGAATTCCAAGATTGTTGGGATGCATGATACTATTGAAATTTATGATCATTTTGTTAGTTTTTATTTTTCTTGTTTATTTGCAATTGAGTTCTAACATCTGATTGTTGATGTTGTTGTAGGTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTA-GAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAGGTATGAGTTTCCTCTAGAAGCACAATCCCTTAAATATGATGAAGCTGAAGATTTGCTAAATTTCAGTTACATTTTTAGCAGTATCCTACAGTAAAACAGTGTCCTGATGTCTATATAAGAGCATGTATATGGATTAAGAATGTTTAGTTTGAGGGTTGCTTCTTTGATGTAGGGGCAAGAGAGTGTTGTTTATACGACTTCGGACTTTCACTTGTTTATAAACGTTAACATGATCTTTAAACACCATGTTAGGGGCAAGGTCTACAATCTGCATACACACTACCCTCCCCGAACCACACTTGTGGGATTACATGAGGATGTGTTGTTGTTATTGACTTATTGTAGAAGTAACTTGTAACATGATTGTAAAATTTGTTCCTATCAATGTTAAGTTAAAAAGTTAAAAGATATCAAATGAATTGGTATTAGATGTAAAATTTGTTCATGATCGTAAAATTTGTTCATATCAATGTTAAGTTAACACGAGAATTGGCATACACACTACCCTCCCCGAACCAAGGTCCTGTAGTGTGTGGTAATTTTCATTCGGCTTTGCTCATTTAAGACTCTTGTTGCAATTTAATATCTCCAGAAGTCTTTTCTTAACTAAGCTGCTTTTTATATCTGCCTTTATATTAATACTGAGTAAAACATCTAGCATGTCTAACCTTGTGTTATAATGTATCAACTTTTGCAGAACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACC</genome_strand>
        <mrna_strand>TTTATTTATAGAGAACTTTTCTAAGTTGGTTTAAAAAGTTAGAAACTTTGAAGGGTGTGAATTAGAATTATATTGAAGTAAATGGAATCACAGGTTATTGAAAGATACCATAGACATTAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGGTGATATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCACTAGTGAGGAGATTTGATCATCCTCACAAGTATAAGCCATTTATTAGCAGGTGTACTGAGAAGGGTGATCTTACAATTGGTAGCGTTACGAGAGGTGAATGTTATGTCTGGTCTTACAGCCACCACTAGCACTGAAAGACTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGAGGTGATCACAGGCTAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATTATTCGGGTATTACAGTCCATCCAGAGACACTTGATGGTAGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336553" ref_strand="+" ref_description="SGN-E336553 [cTOE-4-G13]">
      <seq>ttggtttaaaaagttagaaactttgaagggtgtgaattagaattttattgaagtaaatggaatcacagtttattgaaagataccatagtcatcagcctagtgaacatcagtgttcttcatctcttgttaaacacatcaaagcaccagttgatattgtttggtcactagtgaggagatttgatcagcctcagaagtataagccatttattagcaggtgtactgtgaagggtgatcttacaattggtagtgttagagaggtgaatgtcaagtctggtcttccagccaccactagcactgaaagattggaacttcttgatgatgaggagcacatccttggcatcagaatcgttggtggcgatcacaggcttaagaactattcttcggttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="11777" stop="9407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11477" g_stop="11323" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11322" i_stop="10638" i_length="685">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10637" g_stop="10422" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="371" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10421" i_stop="9725" i_length="697">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9724" g_stop="9707" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="389" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E336553" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11477" e_stop="11323"/>
          <exon e_start="10637" e_stop="10422"/>
          <exon e_start="9724" e_stop="9707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTTAAAAAGTTAGAAACTTTGAAGGGTGTGAATTAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATTGTAAAAATCATATCTTTTTTAGAATTATTCTCTTGATTTCTTGATTTGGGAGTAATTTTTATTTTGTGGGGTTGGGGGTTCTTGAGGATTTCTCTTATTTATTTCTAGTTATACGACATTGGGTTTGTATAACATGATTGTATCTTTTTGTTCTATCTTTTCCTTATTTGTTGGGATACTAATCTTTTGGTTCCTTGTGTGTTTATTTGTGGAAAGTAATGTTTGTTTGGTAAGTTTTCTTTGAAAGGTTTTTTTTTTTCGAATTCCTAGCTAACTATTGGTGACTATGAAATTTGATCAGATTTTCGAAGTCTAATTAATTTCATATTCAAATATCTTTCAAGTTCCCAAAATCTGGATAGGATTTTTGGGACTTCCAATAAGAGAAATCTATGGTCAAACAGTAGCTTATCGAAAATCTTTCTTGGTTGAGGCAATTAATCTGTTTAGGAACCACTGAAGAAGCAGTTACAATATTAGTGTACTAAAAAGGAAAGTATAAGTTTTTGATGTGGATAGTTATCCTTCCTCAATTTACCATAAGATATCCTTTTAAAATATTTGGGGAATTCCAAGATTGTTGGGATGCATGATACTATTGAAATTTATGATCATTTTGTTAGTTTTTATTTTTCTTGTTTATTTGCAATTGAGTTCTAACATCTGATTGTTGATGTTGTTGTAGGTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAGGTATGAGTTTCCTCTAGAAGCACAATCCCTTAAATATGATGAAGCTGAAGATTTGCTAAATTTCAGTTACATTTTTAGCAGTATCCTACAGTAAAACAGTGTCCTGATGTCTATATAAGAGCATGTATATGGATTAAGAATGTTTAGTTTGAGGGTTGCTTCTTTGATGTAGGGGCAAGAGAGTGTTGTTTATACGACTTCGGACTTTCACTTGTTTATAAACGTTAACATGATCTTTAAACACCATGTTAGGGGCAAGGTCTACAATCTGCATACACACTACCCTCCCCGAACCACACTTGTGGGATTACATGAGGATGTGTTGTTGTTATTGACTTATTGTAGAAGTAACTTGTAACATGATTGTAAAATTTGTTCCTATCAATGTTAAGTTAAAAAGTTAAAAGATATCAAATGAATTGGTATTAGATGTAAAATTTGTTCATGATCGTAAAATTTGTTCATATCAATGTTAAGTTAACACGAGAATTGGCATACACACTACCCTCCCCGAACCAAGGTCCTGTAGTGTGTGGTAATTTTCATTCGGCTTTGCTCATTTAAGACTCTTGTTGCAATTTAATATCTCCAGAAGTCTTTTCTTAACTAAGCTGCTTTTTATATCTGCCTTTATATTAATACTGAGTAAAACATCTAGCATGTCTAACCTTGTGTTATAATGTATCAACTTTTGCAGAACTATTCTTCGGTTATT</genome_strand>
        <mrna_strand>TTGGTTTAAAAAGTTAGAAACTTTGAAGGGTGTGAATTAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATTCTTCGGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292681" ref_strand="+" ref_description="SGN-E292681 [cLET-11-K8]">
      <seq>caccaccaattctcaatctctcaaatatatctatttttatttatagagaacttttctaagttggtttaaaaagttagaaactttgaagggtgtgaattagaattttattgaagtaaatggaatcacagtttattgaaagataccatagtcatcagcctagtgaacatcagtgttcttcatctcttgttaaacacatcaaagcaccagttgatattgtttggtcactagtgaggagatttgatcagcctcagaagtataagccatttattagcaagtgtactgtgaagggtgatcttacaattggtagtgttagagaggtgaatgtcaagtctggtcttccagccaccactagcactgaaagattggaacttcttgatgatgaggagcacatccttggcatcagaatcgttggtggcgatcacaggctaaagaactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="11837" stop="10122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11537" g_stop="11323" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11322" i_stop="10638" i_length="685">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10637" g_stop="10422" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="431" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E292681" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11537" e_stop="11323"/>
          <exon e_start="10637" e_stop="10422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCAATTCTCAATCTCTCAAATATATCTATTTTTATTTATAGAGAACTTTTCTAAGTTGGTTTAAAAAGTTAGAAACTTTGAAGGGTGTGAATTAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATTGTAAAAATCATATCTTTTTTAGAATTATTCTCTTGATTTCTTGATTTGGGAGTAATTTTTATTTTGTGGGGTTGGGGGTTCTTGAGGATTTCTCTTATTTATTTCTAGTTATACGACATTGGGTTTGTATAACATGATTGTATCTTTTTGTTCTATCTTTTCCTTATTTGTTGGGATACTAATCTTTTGGTTCCTTGTGTGTTTATTTGTGGAAAGTAATGTTTGTTTGGTAAGTTTTCTTTGAAAGGTTTTTTTTTTTCGAATTCCTAGCTAACTATTGGTGACTATGAAATTTGATCAGATTTTCGAAGTCTAATTAATTTCATATTCAAATATCTTTCAAGTTCCCAAAATCTGGATAGGATTTTTGGGACTTCCAATAAGAGAAATCTATGGTCAAACAGTAGCTTATCGAAAATCTTTCTTGGTTGAGGCAATTAATCTGTTTAGGAACCACTGAAGAAGCAGTTACAATATTAGTGTACTAAAAAGGAAAGTATAAGTTTTTGATGTGGATAGTTATCCTTCCTCAATTTACCATAAGATATCCTTTTAAAATATTTGGGGAATTCCAAGATTGTTGGGATGCATGATACTATTGAAATTTATGATCATTTTGTTAGTTTTTATTTTTCTTGTTTATTTGCAATTGAGTTCTAACATCTGATTGTTGATGTTGTTGTAGGTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAG</genome_strand>
        <mrna_strand>CACCACCAATTCTCAATCTCTCAAATATATCTATTTTTATTTATAGAGAACTTTTCTAAGTTGGTTTAAAAAGTTAGAAACTTTGAAGGGTGTGAATTAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAAGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483057" ref_strand="+" ref_description="SGN-E483057 [cSTE-7-F16]">
      <seq>ctctcaaatctctatttttatttatagagaacttttctaagttgggttaaaaaggtagaaattttgaagtgtttgaattagaattgttgaaggaaatggaagcacagtttattgaaagataccatagtcatcagcctagtgaacatcagtgttcttcaactgttgtcagacacatcaaagcaccagttgatattgttgggtcactagtgaggagatttgatcatcctcagaagtctaagccttttattaacaagtgtgctgtgaagggtgatcttacaataggtgctgttagagatgtgaatgtcaagtccggtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="11820" stop="10215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11520" g_stop="11323" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11322" i_stop="10638" i_length="685">
            <donor d_prob="0.770" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10637" g_stop="10515" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="317" r_length="123" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E483057" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11520" e_stop="11323"/>
          <exon e_start="10637" e_stop="10515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCAAATATATCTATTTTTATTTATAGAGAACTTTTCTAAGTTGGTTTAAAAAGTTAGAAACTTTGAAGGGTGTGAATTAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATTGTAAAAATCATATCTTTTTTAGAATTATTCTCTTGATTTCTTGATTTGGGAGTAATTTTTATTTTGTGGGGTTGGGGGTTCTTGAGGATTTCTCTTATTTATTTCTAGTTATACGACATTGGGTTTGTATAACATGATTGTATCTTTTTGTTCTATCTTTTCCTTATTTGTTGGGATACTAATCTTTTGGTTCCTTGTGTGTTTATTTGTGGAAAGTAATGTTTGTTTGGTAAGTTTTCTTTGAAAGGTTTTTTTTTTTCGAATTCCTAGCTAACTATTGGTGACTATGAAATTTGATCAGATTTTCGAAGTCTAATTAATTTCATATTCAAATATCTTTCAAGTTCCCAAAATCTGGATAGGATTTTTGGGACTTCCAATAAGAGAAATCTATGGTCAAACAGTAGCTTATCGAAAATCTTTCTTGGTTGAGGCAATTAATCTGTTTAGGAACCACTGAAGAAGCAGTTACAATATTAGTGTACTAAAAAGGAAAGTATAAGTTTTTGATGTGGATAGTTATCCTTCCTCAATTTACCATAAGATATCCTTTTAAAATATTTGGGGAATTCCAAGATTGTTGGGATGCATGATACTATTGAAATTTATGATCATTTTGTTAGTTTTTATTTTTCTTGTTTATTTGCAATTGAGTTCTAACATCTGATTGTTGATGTTGTTGTAGGTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTT</genome_strand>
        <mrna_strand>CTCTC-AA-ATCTCTATTTTTATTTATAGAGAACTTTTCTAAGTTGGGTTAAAAAGGTAGAAATTTTGAAGTGTTTGAATTAGAA--TTGTTGAAGGAAATGGAAGCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCAACTGTTGTCAGACACATCAAAGCACCAGTTGATATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGTCACTAGTGAGGAGATTTGATCATCCTCAGAAGTCTAAGCCTTTTATTAACAAGTGTGCTGTGAAGGGTGATCTTACAATAGGTGCTGTTAGAGATGTGAATGTCAAGTCCGGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373517" ref_strand="+" ref_description="SGN-E373517 [TUS-31-H16]">
      <seq>agaattttattgaagtaaatggaatcacagtttattgaaagataccatagtcatcagcctagtgaacatcagtgttcttcatctcttgttaaacacatcaaagcaccagttgatattgtaaaaatcatatcttttttagaattattctcttgatttcttgatttgggagtaatttttattttgtggggttgggggttcttgaggatttctcttatttatttctagttatacgacattgggtttgtataacatgattgtatctttttgttctatcttttccttatttgttgggatactaatcttttggttccttgtgtgtttatttgtggaaagtaatgtttgtttggtaagttttctttgaaaggtttttttttttcgaattcctagctaactattggtgactatgaaatttgatcagattttcgaagtctaattagtttcatattcaaatatcttttcaagttcccaaaatctggataggattttcgggacttccaataagagaaatctatggtcaaacaataccttatcgaaaatctttcttgggtgaggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="11739" stop="10586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11439" g_stop="10886" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E373517" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11439" e_stop="10886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATTGTAAAAATCATATCTTTTTTAGAATTATTCTCTTGATTTCTTGATTTGGGAGTAATTTTTATTTTGTGGGGTTGGGGGTTCTTGAGGATTTCTCTTATTTATTTCTAGTTATACGACATTGGGTTTGTATAACATGATTGTATCTTTTTGTTCTATCTTTTCCTTATTTGTTGGGATACTAATCTTTTGGTTCCTTGTGTGTTTATTTGTGGAAAGTAATGTTTGTTTGGTAAGTTTTCTTTGAAAGGTTTTTTTTTTTCGAATTCCTAGCTAACTATTGGTGACTATGAAATTTGATCAGATTTTCGAAGTCTAATTAATTTCATATTCAAATATC-TTTCAAGTTCCCAAAATCTGGATAGGATTTTTGGGACTTCCAATAAGAGAAATCTATGGTCAAACAGTAGCTTATCGAAAATCTTTCTTGGTTGAGGCAA</genome_strand>
        <mrna_strand>AGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATTGTAAAAATCATATCTTTTTTAGAATTATTCTCTTGATTTCTTGATTTGGGAGTAATTTTTATTTTGTGGGGTTGGGGGTTCTTGAGGATTTCTCTTATTTATTTCTAGTTATACGACATTGGGTTTGTATAACATGATTGTATCTTTTTGTTCTATCTTTTCCTTATTTGTTGGGATACTAATCTTTTGGTTCCTTGTGTGTTTATTTGTGGAAAGTAATGTTTGTTTGGTAAGTTTTCTTTGAAAGGTTTTTTTTTTTCGAATTCCTAGCTAACTATTGGTGACTATGAAATTTGATCAGATTTTCGAAGTCTAATTAGTTTCATATTCAAATATCTTTTCAAGTTCCCAAAATCTGGATAGGATTTTCGGGACTTCCAATAAGAGAAATCTATGGTCAAACAATACCTTATCGAAAATCTTTCTTGGGTGAGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326343" ref_strand="+" ref_description="SGN-E326343 [cTOC-14-H18]">
      <seq>tagaattttattgaagtaaatggaatcacagtttattgaaagataccatagtcatcagcctagtgaacatcagtgttcttcatctcttgttaaacacatcaaagcaccagttgatattgtaaaaatcatatcttttttagaattattctcttgatttcttgatttgggagtaatttttattttgtggggttgggggttcttgaggatttctcttatttatttctagttatacgacattgggtttgtataacatgattgtatctttttgttctatcttttccttatttgttgggatactaatcttttggttccttgtgtgtttatttgtggaaagtaatgtttgtttggtaagttttctttgaaaggtttttttttttcgaatgcctagctaactattggtgactatgaaatttgatcagattttcgaaatctaattaatttcatattcaaatatctttcaagttcccaaaatctggataggatttttgggacttgcaataagagaaatctatggtcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="11740" stop="10621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11440" g_stop="10921" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E326343" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11440" e_stop="10921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATTGTAAAAATCATATCTTTTTTAGAATTATTCTCTTGATTTCTTGATTTGGGAGTAATTTTTATTTTGTGGGGTTGGGGGTTCTTGAGGATTTCTCTTATTTATTTCTAGTTATACGACATTGGGTTTGTATAACATGATTGTATCTTTTTGTTCTATCTTTTCCTTATTTGTTGGGATACTAATCTTTTGGTTCCTTGTGTGTTTATTTGTGGAAAGTAATGTTTGTTTGGTAAGTTTTCTTTGAAAGGTTTTTTTTTTTCGAATTCCTAGCTAACTATTGGTGACTATGAAATTTGATCAGATTTTCGAAGTCTAATTAATTTCATATTCAAATATCTTTCAAGTTCCCAAAATCTGGATAGGATTTTTGGGACTTCCAATAAGAGAAATCTATGGTCAAAC</genome_strand>
        <mrna_strand>TAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATTGTAAAAATCATATCTTTTTTAGAATTATTCTCTTGATTTCTTGATTTGGGAGTAATTTTTATTTTGTGGGGTTGGGGGTTCTTGAGGATTTCTCTTATTTATTTCTAGTTATACGACATTGGGTTTGTATAACATGATTGTATCTTTTTGTTCTATCTTTTCCTTATTTGTTGGGATACTAATCTTTTGGTTCCTTGTGTGTTTATTTGTGGAAAGTAATGTTTGTTTGGTAAGTTTTCTTTGAAAGGTTTTTTTTTTTCGAATGCCTAGCTAACTATTGGTGACTATGAAATTTGATCAGATTTTCGAAATCTAATTAATTTCATATTCAAATATCTTTCAAGTTCCCAAAATCTGGATAGGATTTTTGGGACTTGCAATAAGAGAAATCTATGGTCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290593" ref_strand="+" ref_description="SGN-E290593 [cLES-20-L21]">
      <seq>agaattttattgaagtaaatggaatcacagtttattgaaagataccatagtcatcagcctagtgaacatcagtgttcttcatctcttgttaaacacatcaaagcaccagttgatattgtaaaaatcatatcttttttagaattattctcttgatttcttgatttgggagtaatttttattttgtggggttgggggttcttgaggatttctcttatttatttctagttatacgacattgggtttgtataacatgattgtatctttttgttctatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="11739" stop="10863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11439" g_stop="11163" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E290593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11439" e_stop="11163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATTGTAAAAATCATATCTTTTTTAGAATTATTCTCTTGATTTCTTGATTTGGGAGTAATTTTTATTTTGTGGGGTTGGGGGTTCTTGAGGATTTCTCTTATTTATTTCTAGTTATACGACATTGGGTTTGTATAACATGATTGTATCTTTTTGTTCTATCTTT</genome_strand>
        <mrna_strand>AGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATTGTAAAAATCATATCTTTTTTAGAATTATTCTCTTGATTTCTTGATTTGGGAGTAATTTTTATTTTGTGGGGTTGGGGGTTCTTGAGGATTTCTCTTATTTATTTCTAGTTATACGACATTGGGTTTGTATAACATGATTGTATCTTTTTGTTCTATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258290" ref_strand="+" ref_description="SGN-E258290 [cLEG-49-C16]">
      <seq>ttttgaactttctggtcaaccactggaattctccaaagacaacacgttacattttaaaacaatggaggaaatgtctaagttgaggaagcagctaattaatcttgttttcaactccaaactatgtgactcacagcaaaatttctcatggcctcacggtactttggaagatgtaaaatgtgcttggaggattccttcaaacaaatgccctcttccactgaatgaggaggagattctgggccaagctatttgtgctggctgggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="29055" stop="29917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29355" g_stop="29617" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E258290" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29355" e_stop="29617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAACTTTCTGGTCAACCACTGGAATTCTCCAAAGACAACACGTTACATTTTAAAACAATGGAGGAAATGTCTAAGTTGAGGAAGCAGCTAATTAATCTTGTTTTCAACTCCAAACTATGTGACTCACAGCAAAATTTCTCATGGCCTCACGGTACTTTGGAAGATGTAGAATGTGCTTGGAGGATTCCTTCAAACAAATGCCCTCTTCAACTGAATGAGGAGGAGATTCTGGGCCAAGCTATTTGTGCTGGCTGGGCTG</genome_strand>
        <mrna_strand>TTTTGAACTTTCTGGTCAACCACTGGAATTCTCCAAAGACAACACGTTACATTTTAAAACAATGGAGGAAATGTCTAAGTTGAGGAAGCAGCTAATTAATCTTGTTTTCAACTCCAAACTATGTGACTCACAGCAAAATTTCTCATGGCCTCACGGTACTTTGGAAGATGTAAAATGTGCTTGGAGGATTCCTTCAAACAAATGCCCTCTTCCACTGAATGAGGAGGAGATTCTGGGCCAAGCTATTTGTGCTGGCTGGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261313" ref_strand="+" ref_description="SGN-E261313 [cLEG-68-H14]">
      <seq>ttttgaactttctggtcaaccactggaattctccaaagacaacacgttacattttaaaacaatggaggaaatgtctaagttgaggaagcagctaattaatcttgttttcaactccaaactatgtgactcacagcaaaatttctcatggcctcacggtactttggaagatgtagaatgtgcttggaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="29055" stop="29843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29355" g_stop="29543" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E261313" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29355" e_stop="29543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAACTTTCTGGTCAACCACTGGAATTCTCCAAAGACAACACGTTACATTTTAAAACAATGGAGGAAATGTCTAAGTTGAGGAAGCAGCTAATTAATCTTGTTTTCAACTCCAAACTATGTGACTCACAGCAAAATTTCTCATGGCCTCACGGTACTTTGGAAGATGTAGAATGTGCTTGGAGGAT</genome_strand>
        <mrna_strand>TTTTGAACTTTCTGGTCAACCACTGGAATTCTCCAAAGACAACACGTTACATTTTAAAACAATGGAGGAAATGTCTAAGTTGAGGAAGCAGCTAATTAATCTTGTTTTCAACTCCAAACTATGTGACTCACAGCAAAATTTCTCATGGCCTCACGGTACTTTGGAAGATGTAGAATGTGCTTGGAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351687" ref_strand="+" ref_description="SGN-E351687 [cTOS-8-E10]">
      <seq>taacacaggcataatatctcgcttcgtcaaaaacacaggcataatatctctgccagtgtgaggcgcgagtttacattatctgttaaaaattttggtgtttggagttggaagatggtatcaagttcagaatcaaggaacttgattttcgatttggatgcaatgacctaatgaagaaagaagatccaaccaaagactaaagctacaaagacactcatcttctaacatggaagagagcgtgtacactgcaggtttggacgcaacttatacaagaattgaatattttgcctttagattcaatagttattacagaacatacgcaaagtattatacttggataaagaggcttcattctgtatctagttagtgtcttgggactgcacggttagaaaatagaaatgtagtttgtgttaatgatgatcgtcctcgtaatatttggtgaagcatatttaatctttaacgaactaaaatgtgtatttttggtcctcttatgtataagaaacatatatggtactcaaactagttatnaaaaaagaaatatatcttgtcgatttcgagtacttttaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="30148" stop="33269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30448" g_stop="30509" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30510" i_stop="32461" i_length="1952">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32462" g_stop="32974" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="575" r_length="513" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E351687" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30448" e_stop="30509"/>
          <exon e_start="32462" e_stop="32974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACAGGCATAATATCTCGCTTCGTCAAAAACACAGGCATAATATCTCTGCCAGTGTGAGGTAATGCTAGTCTCCTACCTTCCCTTTCCTTGCTGTTCAGGTGATTAGATGTTTTGGTTTTGGATTGTCATGTGTTTGACCAATAAGTATTATTGTCTTCTCACATTCACTATGGGCAAAGGGATTTTAGTCAGTTCTTTTGAGTAATATTTTTGCATACTATGATTTCCTGTAAGGACCAACTGAAATAATGTCAATTAATGCTAAGTGTTTCTTTTAGATATCATGCTTTAGGAAAACTTAATTGCTCTGAAGTTAGTTTGCTCATCTATGAACTACTATTGCTTCAAAACTGGGGAATAAAATGCTAGTTTAAGATAATTTCCATATAATTTAGGTATTGTTACCACCTACCGGCGAATTTAAATGTATTTTGGGGATGATGGCTAAGTGAAGATATATGAGGACATGTTCATAGTTTATTGAAAGACGATTGCTTTTAAACTCGAACAACAAAGTGAATATCATTGAAACTGTTTTAGTGTTTGGTATTATCTTTGAGATCTTTTAGTTTAACCTCATGACCAAGAATTTCTATTACTATTACAGAAATCACGCCTGTATGTTCTCCATTAAGGCATAGACAAAAAAAAATCGTATGAAGATCTAAAGGCCATTGTATAGGCTTATAAGCATGTTTAAAAAATCCATGATGTGTTGCAATCTGCAGTTTTGCATTTTGTATCTTAGATTTTGTGAATGAAAGATCGTTACTGCCTATTCCAGGCACCTATTGGGCTTAAACAATGTCTTAGAGGTCATGCGTGAGGTTTTAATTAATTCTCTGTTATGCTTGAGTGCTACTAGACGAGGAATGTATGCTTTCTATGCCAATTCTTTTTGAAATCTTTGTCATAGTTTAAGAGTTCCCCTATACATTCTTGACATCAAGATATTAGAGGCAGATGCAAAAATCATGGATGCTTTGAAACTAGTGAGGGAACTTGTGTCTTTGGACGGATTCTTATTAAATCAGGATGCTTTCTGCTCAAATATAACCCTCTGTCGTATGATCTATATAAGATCTGCCTTTGTTTGCTCTGTACTGTTATATGGCTCATAAGGTAGAAATAATAACAAATAAATGAGTGTGTAATGAACTTGGGTTGCCCATGATCATCATTTATTCTCATTGTAATTGTTGCAGTTCTTTCAAACATGCTAAACTGTGTTCCAGTTGTTTGAATGGTGTTTATTATCTTAAACAGGTGTATTGTAGTAGAATCCTATTTTTAATTGTTTAAAGAAAATGAAAAAAAAAACCAGGTTTCTTGTTTCCAGTCCCATGGAAAGAGCTCTATCAATTTAGCTTTGGACAATTTAAGTCTTTTGGTTGGGAAGAAGTTATCCCAGGATAACGTGTCTCATTAAGTTCTTTGCTAGACTTTTTAGCTTAGGATCTGTGGCTTGACTTCCATTTAAGTTCTTTCCTTGGCGGTATGACCAGGGAGTTATTTTGGTTTTGATATGATACAGTCAGTGACTCATCACTTCCACAAAAGATGTCCTTGACTTTGAGAAATATTATAATAAAGGACAGGAGTTGAGATTAAAACTGTATATTCATTTGTTTGATCACAACTTTTTTAGAAAGCTCTGATATCTGATTTAATAGTTAGTTTTCCGAAATTTAAGTTTAACAATGAAGTGATATGGTCAGAGTTCAATGCTTGTATATTTTATTAGTAGGGTTCTTTTCAAGAAAATTTCCTATGCTAGTTAGTGAAACTCTCGTTGCTTCAAGTCTTATTTTGATTAAAGTATATGCTTGTTTAAGGGAATACTATTTAAATAATTTGCTGTTGCATATCTAAACCCTGTTGAGTTATCAAATATCACTTAGAAAACACTTCAGGTCTTATTTGATTAAATTTTGTAGATGTTCCTCGTATATTACCAATACAAGTCCTTTTTGGTAACTTTTTCCTTATTACAGTTTTCTGTTTCTGAAGGCGCGAGTTTACATTATCTGTTAAAAATTTTGGTGTTTGGAGTTGGAAGATGGTATCAAGTTCAGAATCAAGGAACTTGATTTTCGATTTGGATGCAATGACCTAATGAAGAAAGAAGATCCAACCAAAGACTAAAGCTACAAAGACACTCATCTTCTAACATGGAAGAGAGCGTGTACACTGCAGGTTTGGACGCAACTTATACAAGAATTGAATATTTTGCCTTTAGATTCAATAGTTATTACAGAACATACGCAAAGTATTATACTTGGATAAAGAGGCTTCATTCTGTATCTAGTTAGTGTCTTGGGACTGCACGGTTAGAAAATAGAAATGTAGTTTGTGTTAATGATGATCGTCCTCGTAATATTTGGTGAAGCATATTTAATCTTTAACGAACTAAAATGTGTATTTTTGGTCCTCTTATGTATAAGAAACATATATGGTACTCAAACTAGTTATAAAAAAAGAAATATATCTTGTCGATTTCGAGTACTTTTAAGAAATATTTGT</genome_strand>
        <mrna_strand>TAACACAGGCATAATATCTCGCTTCGTCAAAAACACAGGCATAATATCTCTGCCAGTGTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGAGTTTACATTATCTGTTAAAAATTTTGGTGTTTGGAGTTGGAAGATGGTATCAAGTTCAGAATCAAGGAACTTGATTTTCGATTTGGATGCAATGACCTAATGAAGAAAGAAGATCCAACCAAAGACTAAAGCTACAAAGACACTCATCTTCTAACATGGAAGAGAGCGTGTACACTGCAGGTTTGGACGCAACTTATACAAGAATTGAATATTTTGCCTTTAGATTCAATAGTTATTACAGAACATACGCAAAGTATTATACTTGGATAAAGAGGCTTCATTCTGTATCTAGTTAGTGTCTTGGGACTGCACGGTTAGAAAATAGAAATGTAGTTTGTGTTAATGATGATCGTCCTCGTAATATTTGGTGAAGCATATTTAATCTTTAACGAACTAAAATGTGTATTTTTGGTCCTCTTATGTATAAGAAACATATATGGTACTCAAACTAGTTATNAAAAAAGAAATATATCTTGTCGATTTCGAGTACTTTTAAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353653" ref_strand="+" ref_description="SGN-E353653 [cTOS-10-O6]">
      <seq>taacacaggcataatatctcgcttcgtcaaaaacacaggcataatatctctgccagtgtgaggcgcgagtttacattatctgttaaaaattttggtgtttggagttggaagatggtatcaagttcagaatcaaggaacttgattttcgatttggatgcaatgacctaatgaagaaagaagatccaaccaaagactaaagctacaaagacactcatcttctaacatggaagagagcgtgtacactgcaggtttggacgcaacttatacaagaattgaatattttgcctttagattcaatagttattacagaacatacgcaaagtattatacttggataaagaggcttcattctgtatctagttagtgtcttgggactgcacggttagaaaatagaaatgtagtttgtgttaatgatgatcgtcctcgtaatatttggtgaagcatatttaatctttaacgaactaaaatgtgtatttttggtcctcttatgtataagaaacatatatggtactcaaactagttataaaaaaagaaatatatcttgtcgatttcgagtacttttaagacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="30148" stop="33269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30448" g_stop="30509" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30510" i_stop="32461" i_length="1952">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32462" g_stop="32973" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="574" r_length="512" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E353653" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30448" e_stop="30509"/>
          <exon e_start="32462" e_stop="32973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACAGGCATAATATCTCGCTTCGTCAAAAACACAGGCATAATATCTCTGCCAGTGTGAGGTAATGCTAGTCTCCTACCTTCCCTTTCCTTGCTGTTCAGGTGATTAGATGTTTTGGTTTTGGATTGTCATGTGTTTGACCAATAAGTATTATTGTCTTCTCACATTCACTATGGGCAAAGGGATTTTAGTCAGTTCTTTTGAGTAATATTTTTGCATACTATGATTTCCTGTAAGGACCAACTGAAATAATGTCAATTAATGCTAAGTGTTTCTTTTAGATATCATGCTTTAGGAAAACTTAATTGCTCTGAAGTTAGTTTGCTCATCTATGAACTACTATTGCTTCAAAACTGGGGAATAAAATGCTAGTTTAAGATAATTTCCATATAATTTAGGTATTGTTACCACCTACCGGCGAATTTAAATGTATTTTGGGGATGATGGCTAAGTGAAGATATATGAGGACATGTTCATAGTTTATTGAAAGACGATTGCTTTTAAACTCGAACAACAAAGTGAATATCATTGAAACTGTTTTAGTGTTTGGTATTATCTTTGAGATCTTTTAGTTTAACCTCATGACCAAGAATTTCTATTACTATTACAGAAATCACGCCTGTATGTTCTCCATTAAGGCATAGACAAAAAAAAATCGTATGAAGATCTAAAGGCCATTGTATAGGCTTATAAGCATGTTTAAAAAATCCATGATGTGTTGCAATCTGCAGTTTTGCATTTTGTATCTTAGATTTTGTGAATGAAAGATCGTTACTGCCTATTCCAGGCACCTATTGGGCTTAAACAATGTCTTAGAGGTCATGCGTGAGGTTTTAATTAATTCTCTGTTATGCTTGAGTGCTACTAGACGAGGAATGTATGCTTTCTATGCCAATTCTTTTTGAAATCTTTGTCATAGTTTAAGAGTTCCCCTATACATTCTTGACATCAAGATATTAGAGGCAGATGCAAAAATCATGGATGCTTTGAAACTAGTGAGGGAACTTGTGTCTTTGGACGGATTCTTATTAAATCAGGATGCTTTCTGCTCAAATATAACCCTCTGTCGTATGATCTATATAAGATCTGCCTTTGTTTGCTCTGTACTGTTATATGGCTCATAAGGTAGAAATAATAACAAATAAATGAGTGTGTAATGAACTTGGGTTGCCCATGATCATCATTTATTCTCATTGTAATTGTTGCAGTTCTTTCAAACATGCTAAACTGTGTTCCAGTTGTTTGAATGGTGTTTATTATCTTAAACAGGTGTATTGTAGTAGAATCCTATTTTTAATTGTTTAAAGAAAATGAAAAAAAAAACCAGGTTTCTTGTTTCCAGTCCCATGGAAAGAGCTCTATCAATTTAGCTTTGGACAATTTAAGTCTTTTGGTTGGGAAGAAGTTATCCCAGGATAACGTGTCTCATTAAGTTCTTTGCTAGACTTTTTAGCTTAGGATCTGTGGCTTGACTTCCATTTAAGTTCTTTCCTTGGCGGTATGACCAGGGAGTTATTTTGGTTTTGATATGATACAGTCAGTGACTCATCACTTCCACAAAAGATGTCCTTGACTTTGAGAAATATTATAATAAAGGACAGGAGTTGAGATTAAAACTGTATATTCATTTGTTTGATCACAACTTTTTTAGAAAGCTCTGATATCTGATTTAATAGTTAGTTTTCCGAAATTTAAGTTTAACAATGAAGTGATATGGTCAGAGTTCAATGCTTGTATATTTTATTAGTAGGGTTCTTTTCAAGAAAATTTCCTATGCTAGTTAGTGAAACTCTCGTTGCTTCAAGTCTTATTTTGATTAAAGTATATGCTTGTTTAAGGGAATACTATTTAAATAATTTGCTGTTGCATATCTAAACCCTGTTGAGTTATCAAATATCACTTAGAAAACACTTCAGGTCTTATTTGATTAAATTTTGTAGATGTTCCTCGTATATTACCAATACAAGTCCTTTTTGGTAACTTTTTCCTTATTACAGTTTTCTGTTTCTGAAGGCGCGAGTTTACATTATCTGTTAAAAATTTTGGTGTTTGGAGTTGGAAGATGGTATCAAGTTCAGAATCAAGGAACTTGATTTTCGATTTGGATGCAATGACCTAATGAAGAAAGAAGATCCAACCAAAGACTAAAGCTACAAAGACACTCATCTTCTAACATGGAAGAGAGCGTGTACACTGCAGGTTTGGACGCAACTTATACAAGAATTGAATATTTTGCCTTTAGATTCAATAGTTATTACAGAACATACGCAAAGTATTATACTTGGATAAAGAGGCTTCATTCTGTATCTAGTTAGTGTCTTGGGACTGCACGGTTAGAAAATAGAAATGTAGTTTGTGTTAATGATGATCGTCCTCGTAATATTTGGTGAAGCATATTTAATCTTTAACGAACTAAAATGTGTATTTTTGGTCCTCTTATGTATAAGAAACATATATGGTACTCAAACTAGTTATAAAAAAAGAAATATATCTTGTCGATTTCGAGTACTTTTAAGAAATATTTG</genome_strand>
        <mrna_strand>TAACACAGGCATAATATCTCGCTTCGTCAAAAACACAGGCATAATATCTCTGCCAGTGTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGAGTTTACATTATCTGTTAAAAATTTTGGTGTTTGGAGTTGGAAGATGGTATCAAGTTCAGAATCAAGGAACTTGATTTTCGATTTGGATGCAATGACCTAATGAAGAAAGAAGATCCAACCAAAGACTAAAGCTACAAAGACACTCATCTTCTAACATGGAAGAGAGCGTGTACACTGCAGGTTTGGACGCAACTTATACAAGAATTGAATATTTTGCCTTTAGATTCAATAGTTATTACAGAACATACGCAAAGTATTATACTTGGATAAAGAGGCTTCATTCTGTATCTAGTTAGTGTCTTGGGACTGCACGGTTAGAAAATAGAAATGTAGTTTGTGTTAATGATGATCGTCCTCGTAATATTTGGTGAAGCATATTTAATCTTTAACGAACTAAAATGTGTATTTTTGGTCCTCTTATGTATAAGAAACATATATGGTACTCAAACTAGTTATAAAAAAAGAAATATATCTTGTCGATTTCGAGTACTTTTAAGACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349908" ref_strand="+" ref_description="SGN-E349908 [cTOS-3-E14]">
      <seq>taacacaggcataatatctcgcttcgtcaaaaacacaggcataatatctctgccagtgtgaggcgcgagtttacattatctgttaaaaattttggtgtttggagttggaagatggtatcaagttcagaatcaaggaacttgattttcgatttggatgcaatgacctaatgaagaaagaagatccaaccaaagactaaagctacaaagacactcatcttctaacatggaagagagcgtgtacactgcaggtttggacgcaacttatacaagaattgaatattttgcctttagattcaatagttattacagaacatacgcaaagtattatacttggataaagaggcttcattctgtatctagttagtgtcttgggactgcacggttagaaaatagaaatgtagtttgtgttaatgatgatcgtcctcgtaatatttggtgaagcatatttaatctttaacgaactaaaatgtgtatttttggtcctcttatgtataagaaacatatatggtactcaaactagttataaaaaaagaaatatatcttgtcgatttcgagtacttttaagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="30148" stop="33269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30448" g_stop="30509" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30510" i_stop="32461" i_length="1952">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32462" g_stop="32971" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="572" r_length="510" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E349908" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30448" e_stop="30509"/>
          <exon e_start="32462" e_stop="32971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACAGGCATAATATCTCGCTTCGTCAAAAACACAGGCATAATATCTCTGCCAGTGTGAGGTAATGCTAGTCTCCTACCTTCCCTTTCCTTGCTGTTCAGGTGATTAGATGTTTTGGTTTTGGATTGTCATGTGTTTGACCAATAAGTATTATTGTCTTCTCACATTCACTATGGGCAAAGGGATTTTAGTCAGTTCTTTTGAGTAATATTTTTGCATACTATGATTTCCTGTAAGGACCAACTGAAATAATGTCAATTAATGCTAAGTGTTTCTTTTAGATATCATGCTTTAGGAAAACTTAATTGCTCTGAAGTTAGTTTGCTCATCTATGAACTACTATTGCTTCAAAACTGGGGAATAAAATGCTAGTTTAAGATAATTTCCATATAATTTAGGTATTGTTACCACCTACCGGCGAATTTAAATGTATTTTGGGGATGATGGCTAAGTGAAGATATATGAGGACATGTTCATAGTTTATTGAAAGACGATTGCTTTTAAACTCGAACAACAAAGTGAATATCATTGAAACTGTTTTAGTGTTTGGTATTATCTTTGAGATCTTTTAGTTTAACCTCATGACCAAGAATTTCTATTACTATTACAGAAATCACGCCTGTATGTTCTCCATTAAGGCATAGACAAAAAAAAATCGTATGAAGATCTAAAGGCCATTGTATAGGCTTATAAGCATGTTTAAAAAATCCATGATGTGTTGCAATCTGCAGTTTTGCATTTTGTATCTTAGATTTTGTGAATGAAAGATCGTTACTGCCTATTCCAGGCACCTATTGGGCTTAAACAATGTCTTAGAGGTCATGCGTGAGGTTTTAATTAATTCTCTGTTATGCTTGAGTGCTACTAGACGAGGAATGTATGCTTTCTATGCCAATTCTTTTTGAAATCTTTGTCATAGTTTAAGAGTTCCCCTATACATTCTTGACATCAAGATATTAGAGGCAGATGCAAAAATCATGGATGCTTTGAAACTAGTGAGGGAACTTGTGTCTTTGGACGGATTCTTATTAAATCAGGATGCTTTCTGCTCAAATATAACCCTCTGTCGTATGATCTATATAAGATCTGCCTTTGTTTGCTCTGTACTGTTATATGGCTCATAAGGTAGAAATAATAACAAATAAATGAGTGTGTAATGAACTTGGGTTGCCCATGATCATCATTTATTCTCATTGTAATTGTTGCAGTTCTTTCAAACATGCTAAACTGTGTTCCAGTTGTTTGAATGGTGTTTATTATCTTAAACAGGTGTATTGTAGTAGAATCCTATTTTTAATTGTTTAAAGAAAATGAAAAAAAAAACCAGGTTTCTTGTTTCCAGTCCCATGGAAAGAGCTCTATCAATTTAGCTTTGGACAATTTAAGTCTTTTGGTTGGGAAGAAGTTATCCCAGGATAACGTGTCTCATTAAGTTCTTTGCTAGACTTTTTAGCTTAGGATCTGTGGCTTGACTTCCATTTAAGTTCTTTCCTTGGCGGTATGACCAGGGAGTTATTTTGGTTTTGATATGATACAGTCAGTGACTCATCACTTCCACAAAAGATGTCCTTGACTTTGAGAAATATTATAATAAAGGACAGGAGTTGAGATTAAAACTGTATATTCATTTGTTTGATCACAACTTTTTTAGAAAGCTCTGATATCTGATTTAATAGTTAGTTTTCCGAAATTTAAGTTTAACAATGAAGTGATATGGTCAGAGTTCAATGCTTGTATATTTTATTAGTAGGGTTCTTTTCAAGAAAATTTCCTATGCTAGTTAGTGAAACTCTCGTTGCTTCAAGTCTTATTTTGATTAAAGTATATGCTTGTTTAAGGGAATACTATTTAAATAATTTGCTGTTGCATATCTAAACCCTGTTGAGTTATCAAATATCACTTAGAAAACACTTCAGGTCTTATTTGATTAAATTTTGTAGATGTTCCTCGTATATTACCAATACAAGTCCTTTTTGGTAACTTTTTCCTTATTACAGTTTTCTGTTTCTGAAGGCGCGAGTTTACATTATCTGTTAAAAATTTTGGTGTTTGGAGTTGGAAGATGGTATCAAGTTCAGAATCAAGGAACTTGATTTTCGATTTGGATGCAATGACCTAATGAAGAAAGAAGATCCAACCAAAGACTAAAGCTACAAAGACACTCATCTTCTAACATGGAAGAGAGCGTGTACACTGCAGGTTTGGACGCAACTTATACAAGAATTGAATATTTTGCCTTTAGATTCAATAGTTATTACAGAACATACGCAAAGTATTATACTTGGATAAAGAGGCTTCATTCTGTATCTAGTTAGTGTCTTGGGACTGCACGGTTAGAAAATAGAAATGTAGTTTGTGTTAATGATGATCGTCCTCGTAATATTTGGTGAAGCATATTTAATCTTTAACGAACTAAAATGTGTATTTTTGGTCCTCTTATGTATAAGAAACATATATGGTACTCAAACTAGTTATAAAAAAAGAAATATATCTTGTCGATTTCGAGTACTTTTAAGAAATATT</genome_strand>
        <mrna_strand>TAACACAGGCATAATATCTCGCTTCGTCAAAAACACAGGCATAATATCTCTGCCAGTGTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGAGTTTACATTATCTGTTAAAAATTTTGGTGTTTGGAGTTGGAAGATGGTATCAAGTTCAGAATCAAGGAACTTGATTTTCGATTTGGATGCAATGACCTAATGAAGAAAGAAGATCCAACCAAAGACTAAAGCTACAAAGACACTCATCTTCTAACATGGAAGAGAGCGTGTACACTGCAGGTTTGGACGCAACTTATACAAGAATTGAATATTTTGCCTTTAGATTCAATAGTTATTACAGAACATACGCAAAGTATTATACTTGGATAAAGAGGCTTCATTCTGTATCTAGTTAGTGTCTTGGGACTGCACGGTTAGAAAATAGAAATGTAGTTTGTGTTAATGATGATCGTCCTCGTAATATTTGGTGAAGCATATTTAATCTTTAACGAACTAAAATGTGTATTTTTGGTCCTCTTATGTATAAGAAACATATATGGTACTCAAACTAGTTATAAAAAAAGAAATATATCTTGTCGATTTCGAGTACTTTTAAGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354817" ref_strand="+" ref_description="SGN-E354817 [cTOS-19-M18]">
      <seq>taacacaggcataatatctcgcttcgtcaaaaacacaggcataatatctctgccagtgtgaggcgcgagtttacattatctgttaaaaattttggtgtttggagttggaagatggtatcaagttcagaatcaaggaacttgattttcgatttggatgcaatgacctaatgaagaaagaagatccaaccaaagactaaagctacaaagacactcatcttctaacatggaagagagcgtgtacactgcaggtttggacgcaacttatacaagaattgaatattttgcctttagattcaatagttattacagaacatacgcaaagtattatacttggataaagaggcttcattctgtatctagttagtgtcttgggactgcacggttagaaaatagaaatgtagtttgtgttaatgatgatcgtcctcgtaatatttggtgaagcatatttaatctttaacgaactaaaatgtgtatttttgggcctcttatgtataagaaacatatatggtactctaactagttataaaaaaagaaatatatcttgtcgatttcgagtacttttaatgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="30148" stop="33269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30448" g_stop="30509" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30510" i_stop="32461" i_length="1952">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32462" g_stop="32953" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="554" r_length="492" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E354817" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30448" e_stop="30509"/>
          <exon e_start="32462" e_stop="32953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACAGGCATAATATCTCGCTTCGTCAAAAACACAGGCATAATATCTCTGCCAGTGTGAGGTAATGCTAGTCTCCTACCTTCCCTTTCCTTGCTGTTCAGGTGATTAGATGTTTTGGTTTTGGATTGTCATGTGTTTGACCAATAAGTATTATTGTCTTCTCACATTCACTATGGGCAAAGGGATTTTAGTCAGTTCTTTTGAGTAATATTTTTGCATACTATGATTTCCTGTAAGGACCAACTGAAATAATGTCAATTAATGCTAAGTGTTTCTTTTAGATATCATGCTTTAGGAAAACTTAATTGCTCTGAAGTTAGTTTGCTCATCTATGAACTACTATTGCTTCAAAACTGGGGAATAAAATGCTAGTTTAAGATAATTTCCATATAATTTAGGTATTGTTACCACCTACCGGCGAATTTAAATGTATTTTGGGGATGATGGCTAAGTGAAGATATATGAGGACATGTTCATAGTTTATTGAAAGACGATTGCTTTTAAACTCGAACAACAAAGTGAATATCATTGAAACTGTTTTAGTGTTTGGTATTATCTTTGAGATCTTTTAGTTTAACCTCATGACCAAGAATTTCTATTACTATTACAGAAATCACGCCTGTATGTTCTCCATTAAGGCATAGACAAAAAAAAATCGTATGAAGATCTAAAGGCCATTGTATAGGCTTATAAGCATGTTTAAAAAATCCATGATGTGTTGCAATCTGCAGTTTTGCATTTTGTATCTTAGATTTTGTGAATGAAAGATCGTTACTGCCTATTCCAGGCACCTATTGGGCTTAAACAATGTCTTAGAGGTCATGCGTGAGGTTTTAATTAATTCTCTGTTATGCTTGAGTGCTACTAGACGAGGAATGTATGCTTTCTATGCCAATTCTTTTTGAAATCTTTGTCATAGTTTAAGAGTTCCCCTATACATTCTTGACATCAAGATATTAGAGGCAGATGCAAAAATCATGGATGCTTTGAAACTAGTGAGGGAACTTGTGTCTTTGGACGGATTCTTATTAAATCAGGATGCTTTCTGCTCAAATATAACCCTCTGTCGTATGATCTATATAAGATCTGCCTTTGTTTGCTCTGTACTGTTATATGGCTCATAAGGTAGAAATAATAACAAATAAATGAGTGTGTAATGAACTTGGGTTGCCCATGATCATCATTTATTCTCATTGTAATTGTTGCAGTTCTTTCAAACATGCTAAACTGTGTTCCAGTTGTTTGAATGGTGTTTATTATCTTAAACAGGTGTATTGTAGTAGAATCCTATTTTTAATTGTTTAAAGAAAATGAAAAAAAAAACCAGGTTTCTTGTTTCCAGTCCCATGGAAAGAGCTCTATCAATTTAGCTTTGGACAATTTAAGTCTTTTGGTTGGGAAGAAGTTATCCCAGGATAACGTGTCTCATTAAGTTCTTTGCTAGACTTTTTAGCTTAGGATCTGTGGCTTGACTTCCATTTAAGTTCTTTCCTTGGCGGTATGACCAGGGAGTTATTTTGGTTTTGATATGATACAGTCAGTGACTCATCACTTCCACAAAAGATGTCCTTGACTTTGAGAAATATTATAATAAAGGACAGGAGTTGAGATTAAAACTGTATATTCATTTGTTTGATCACAACTTTTTTAGAAAGCTCTGATATCTGATTTAATAGTTAGTTTTCCGAAATTTAAGTTTAACAATGAAGTGATATGGTCAGAGTTCAATGCTTGTATATTTTATTAGTAGGGTTCTTTTCAAGAAAATTTCCTATGCTAGTTAGTGAAACTCTCGTTGCTTCAAGTCTTATTTTGATTAAAGTATATGCTTGTTTAAGGGAATACTATTTAAATAATTTGCTGTTGCATATCTAAACCCTGTTGAGTTATCAAATATCACTTAGAAAACACTTCAGGTCTTATTTGATTAAATTTTGTAGATGTTCCTCGTATATTACCAATACAAGTCCTTTTTGGTAACTTTTTCCTTATTACAGTTTTCTGTTTCTGAAGGCGCGAGTTTACATTATCTGTTAAAAATTTTGGTGTTTGGAGTTGGAAGATGGTATCAAGTTCAGAATCAAGGAACTTGATTTTCGATTTGGATGCAATGACCTAATGAAGAAAGAAGATCCAACCAAAGACTAAAGCTACAAAGACACTCATCTTCTAACATGGAAGAGAGCGTGTACACTGCAGGTTTGGACGCAACTTATACAAGAATTGAATATTTTGCCTTTAGATTCAATAGTTATTACAGAACATACGCAAAGTATTATACTTGGATAAAGAGGCTTCATTCTGTATCTAGTTAGTGTCTTGGGACTGCACGGTTAGAAAATAGAAATGTAGTTTGTGTTAATGATGATCGTCCTCGTAATATTTGGTGAAGCATATTTAATCTTTAACGAACTAAAATGTGTATTTTTGGTCCTCTTATGTATAAGAAACATATATGGTACTCAAACTAGTTATAAAAAAAGAAATATATCTTGTCGATTTCGA</genome_strand>
        <mrna_strand>TAACACAGGCATAATATCTCGCTTCGTCAAAAACACAGGCATAATATCTCTGCCAGTGTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGAGTTTACATTATCTGTTAAAAATTTTGGTGTTTGGAGTTGGAAGATGGTATCAAGTTCAGAATCAAGGAACTTGATTTTCGATTTGGATGCAATGACCTAATGAAGAAAGAAGATCCAACCAAAGACTAAAGCTACAAAGACACTCATCTTCTAACATGGAAGAGAGCGTGTACACTGCAGGTTTGGACGCAACTTATACAAGAATTGAATATTTTGCCTTTAGATTCAATAGTTATTACAGAACATACGCAAAGTATTATACTTGGATAAAGAGGCTTCATTCTGTATCTAGTTAGTGTCTTGGGACTGCACGGTTAGAAAATAGAAATGTAGTTTGTGTTAATGATGATCGTCCTCGTAATATTTGGTGAAGCATATTTAATCTTTAACGAACTAAAATGTGTATTTTTGGGCCTCTTATGTATAAGAAACATATATGGTACTCTAACTAGTTATAAAAAAAGAAATATATCTTGTCGATTTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319420" ref_strand="+" ref_description="SGN-E319420 [cTOB-15-L5]">
      <seq>caaacgtttaaatcgtacattcagatcccatccttgtctgaataagaataaacttctatactctccaatgggaaagatattcatcatccatcctgatgagaggtcatctgcccctcaccctctgcttgctccaggcagtggcatttattccctagacagcaccaattgtgcatttactaggagagctttcagagtttttttgaattctccacacccattagagattctaagtgtccctacagcatatggttctggtggtacaattctcagagaccatgactcgagcaattatctgaaggctgtgaacaacattataaggcaacacacaaaactacttgtccggagagtaagaaaacagaggaacctgatttggccgttattggcttcacaatctccacatgcatggagccatgagcgcgacatataagatagaggaatattaagaaaggaaataatgtcaagcgtttgatttcctagtgagaattcataccctacctattgaggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="41529" stop="42793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41829" g_stop="41877" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41878" i_stop="42035" i_length="158">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42036" g_stop="42493" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="507" r_length="458" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E319420" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41829" e_stop="41877"/>
          <exon e_start="42036" e_stop="42493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACGTTTAAATCGTACATTCAGATCCCATCCTTGTCTGAATAAGAATGTGAGTACACACTCTCATACATCGTTTCTAGATTTAAAATTTTGAAGCTACTTCAAACCCCTTCTAATACAGAGAATAACCAAGTTTTACAACTGAATGTTACTTCTAGCTTTGTGTAACAATCTAACCCACCCTGGGACGTGTGCTTGTTCTTGCAGAAACTTCTATACTCTCCAATGGGAAAGATATTCATCATCCAGCCTGATGAGAGGTCATCTGCCCCTCACCCTCTGCTTCCTCCAGGCAGTGGCATTTATTCCCTAGACAGCACCAATTGTGCATTTACTAGGAGAGCTTTCAGAGTTTTTTTGAATTCTCCACACCCATTAGAGATTCTAAGTGTCCCTACAGCATATGGTTCTGGTGGTACAATTCTCAGAGACCATGACTCGAGCAATTATCTGAAGGCTGTGAACAACATTATAAGGCAACACACAAAACTACTTGTCCGGAGAGTAAGAAAACAGAGGAACCTGATTTGGCCGTTATTGGCTTCACAATCTCCACATGCATGGAGCCATGAGCGCGACATAGAAGATAGAGGAATATTAAGAAAGGAAATAATGTCAAGCGTTTGATTTCCTAGTGAGAATTCATACCCTACCTATTGAGGCCT</genome_strand>
        <mrna_strand>CAAACGTTTAAATCGTACATTCAGATCCCATCCTTGTCTGAATAAGAAT..............................................................................................................................................................AAACTTCTATACTCTCCAATGGGAAAGATATTCATCATCCATCCTGATGAGAGGTCATCTGCCCCTCACCCTCTGCTTGCTCCAGGCAGTGGCATTTATTCCCTAGACAGCACCAATTGTGCATTTACTAGGAGAGCTTTCAGAGTTTTTTTGAATTCTCCACACCCATTAGAGATTCTAAGTGTCCCTACAGCATATGGTTCTGGTGGTACAATTCTCAGAGACCATGACTCGAGCAATTATCTGAAGGCTGTGAACAACATTATAAGGCAACACACAAAACTACTTGTCCGGAGAGTAAGAAAACAGAGGAACCTGATTTGGCCGTTATTGGCTTCACAATCTCCACATGCATGGAGCCATGAGCGCGACATATAAGATAGAGGAATATTAAGAAAGGAAATAATGTCAAGCGTTTGATTTCCTAGTGAGAATTCATACCCTACCTATTGAGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558145" ref_strand="+" ref_description="SGN-E558145 [17055]">
      <seq>tctcagagtctttttgaattctccacacccattagagattctaagtgtccctacagcatatggttctggtggtacaatcctcagagaccatgactcgagcaattatctgaaggctgtgaacaacattataaggcaacgcacaaaactacttgtccggagagtaagaaaacagaggaacctgatttggccgttattggcttcacaatctccacatgcatggagccatgagcgtgacatagaagatagaggaatattaagaaaggaaataatgtcaagcgtttgatttcctagtgagaattcataccccctccagtgagccttctcatgccccagacctgccaaattataaatctattacaaaagctcaaactcatttgagaattgttctacccaattagaacctataagttatcctgcaacctatgatctttagggaactataagagggagagatggttcaggctattataatttatatgaagactgtcaatgtaccttgtagcaacaaagcacataaggcaaaggagcttggtttggactacttttggtgcatgatatcagtagccatactttggaaaaggaagaatgggatatagtaattactgaaattacaaggagggagtacatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="41875" stop="43119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42173" g_stop="42819" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E558145" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42173" e_stop="42819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGAGTTTTTTTGAATTCTCCACACCCATTAGAGATTCTAAGTGTCCCTACAGCATATGGTTCTGGTGGTACAATTCTCAGAGACCATGACTCGAGCAATTATCTGAAGGCTGTGAACAACATTATAAGGCAACACACAAAACTACTTGTCCGGAGAGTAAGAAAACAGAGGAACCTGATTTGGCCGTTATTGGCTTCACAATCTCCACATGCATGGAGCCATGAGCGCGACATAGAAGATAGAGGAATATTAAGAAAGGAAATAATGTCAAGCGTTTGATTTCCTAGTGAGAATTCATACCCTACCTATTGAGGCCTTCTCTTGCCCCAGTCCTGCCAGCCAAATTATAAGTCTATTACAAGAGCTCAACCTCATTTGAGAATTGTTCTACCTAATTAGAACCTATAAGTTATCCTACAACCTATGATCTTTAGAGAACTATAAGAGGGAGAGATGGTTCAGCCTATTATAATTTATATGAAGACTTTCAATGTA-CTAATAGCAACAAAGTGCAGACATATCAGGAGAGCACATAAGCAAAGGAGCTTGGTTT-GACTAC-TTTGGTGCATGATATCAGTAGCCATACTTTGGAAAA-GAAGAATGGG-TATAGTAATTACTGAAATCATAA-GAGGAAGTACATGAA</genome_strand>
        <mrna_strand>TCTCAGAGTCTTTTTGAATTCTCCACACCCATTAGAGATTCTAAGTGTCCCTACAGCATATGGTTCTGGTGGTACAATCCTCAGAGACCATGACTCGAGCAATTATCTGAAGGCTGTGAACAACATTATAAGGCAACGCACAAAACTACTTGTCCGGAGAGTAAGAAAACAGAGGAACCTGATTTGGCCGTTATTGGCTTCACAATCTCCACATGCATGGAGCCATGAGCGTGACATAGAAGATAGAGGAATATTAAGAAAGGAAATAATGTCAAGCGTTTGATTTCCTAGTGAGAATTCATACCCCCTCCAGTGA-GCCTTCTCATGCCCCAGACCT----GCCAAATTATAAATCTATTACAAAAGCTCAAACTCATTTGAGAATTGTTCTACCCAATTAGAACCTATAAGTTATCCTGCAACCTATGATCTTTAGGGAACTATAAGAGGGAGAGATGGTTCAGGCTATTATAATTTATATGAAGACTGTCAATGTACCTTGTAGCAACAAA--GC--AC--AT----A-AG-------GCAAAGGAGCTTGGTTTGGACTACTTTTGGTGCATGATATCAGTAGCCATACTTTGGAAAAGGAAGAATGGGATATAGTAATTACTGAAATTACAAGGAGGGAGTACATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725886" ref_strand="+" ref_description="SGN-E725886 [LA08CE10]">
      <seq>cttttgtgttagtttatggggtcctgtgccaattaattcacttcctgaggtcactgcggaacctcctcgtaaagatggtggcggaattgcttctaagtgaaacatttcttgattcctgtagctccgtctatgctgttttttccggcgggcacgaaaaccaagggcaacctttcgtctctaaacattttaatgtgatagatcctttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="53123" stop="54023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53423" g_stop="53478" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53479" i_stop="53573" i_length="95">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53574" g_stop="53724" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="208" r_length="152" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E725886" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53423" e_stop="53478"/>
          <exon e_start="53574" e_stop="53724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTGTTAGTTTATGGGGTCCTGTGCCAATTAATTCACTTCCTGATGTCACTGGTAATGACCATATGTAGAGTCATTTTTTTTAAAAAAAAATTCCTGTAGTTTGGATTAAGTTTATTTAATGGCTTAATTTGTTGTTCGTGTTACAGCGGAACCTCCTCGTAAAGATGGTGG-GGAATTGCTTCTAAGTAAAACATTTCTTGATTCCTGTAGCTCCGTCTATGCTGTTTTTCCCGGCGGGCAGGAAAACCAAGGGCAACCTTTCGTCTCTAAACATTTTAATGTGATAGATCCTTTACG</genome_strand>
        <mrna_strand>CTTTTGTGTTAGTTTATGGGGTCCTGTGCCAATTAATTCACTTCCTGAGGTCACTG...............................................................................................CGGAACCTCCTCGTAAAGATGGTGGCGGAATTGCTTCTAAGTGAAACATTTCTTGATTCCTGTAGCTCCGTCTATGCTGTTTTTTCCGGCGGGCACGAAAACCAAGGGCAACCTTTCGTCTCTAAACATTTTAATGTGATAGATCCTTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725473" ref_strand="+" ref_description="SGN-E725473 [LA03CE10]">
      <seq>cttttgtgttagtttatggggtcctgtgccaattaattcacttcctgatgtcactgcggaacctcctcgtaaagatggtggggaattgcttctaagtaaaacactttcttgattcctgtagctccgtctatgctgtttttcccggcgggcaggaaaaccaagggcaaccttttcgtctcttaaacattttaatgtgatagatccttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="53123" stop="54023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53423" g_stop="53478" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53479" i_stop="53573" i_length="95">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53574" g_stop="53723" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="210" r_length="154" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E725473" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>206</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53423" e_stop="53478"/>
          <exon e_start="53574" e_stop="53723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTGTTAGTTTATGGGGTCCTGTGCCAATTAATTCACTTCCTGATGTCACTGGTAATGACCATATGTAGAGTCATTTTTTTTAAAAAAAAATTCCTGTAGTTTGGATTAAGTTTATTTAATGGCTTAATTTGTTGTTCGTGTTACAGCGGAACCTCCTCGTAAAGATGGTGGGGAATTGCTTCTAAGTAAAACA-TTTCTTGATTCCTGTAGCTCCGTCTATGCTGTTTTTCCCGGCGGGCAGGAAAACCAAGGGCAACC-TTTCGTCTC-TAAACATTTTAATGTGATAGATCC-TTTAC</genome_strand>
        <mrna_strand>CTTTTGTGTTAGTTTATGGGGTCCTGTGCCAATTAATTCACTTCCTGATGTCACTG...............................................................................................CGGAACCTCCTCGTAAAGATGGTGGGGAATTGCTTCTAAGTAAAACACTTTCTTGATTCCTGTAGCTCCGTCTATGCTGTTTTTCCCGGCGGGCAGGAAAACCAAGGGCAACCTTTTCGTCTCTTAAACATTTTAATGTGATAGATCCTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725516" ref_strand="+" ref_description="SGN-E725516 [LA03DE10]">
      <seq>cttttgtgttagtttatggggtcctgtgccaattaattcacttcctgatgtcactgcggaacctcctcgtaaagatggtggggaattgcttctaagtaaaacatttcttgattcctgtagctccgtctatgctgtttttcccggcgggcaggaaaaccaagggcaacctttcgtctctaaacattttaatgtgatagatcctttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="53123" stop="54023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53423" g_stop="53478" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53479" i_stop="53573" i_length="95">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53574" g_stop="53723" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="206" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E725516" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>206</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53423" e_stop="53478"/>
          <exon e_start="53574" e_stop="53723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTGTTAGTTTATGGGGTCCTGTGCCAATTAATTCACTTCCTGATGTCACTGGTAATGACCATATGTAGAGTCATTTTTTTTAAAAAAAAATTCCTGTAGTTTGGATTAAGTTTATTTAATGGCTTAATTTGTTGTTCGTGTTACAGCGGAACCTCCTCGTAAAGATGGTGGGGAATTGCTTCTAAGTAAAACATTTCTTGATTCCTGTAGCTCCGTCTATGCTGTTTTTCCCGGCGGGCAGGAAAACCAAGGGCAACCTTTCGTCTCTAAACATTTTAATGTGATAGATCCTTTAC</genome_strand>
        <mrna_strand>CTTTTGTGTTAGTTTATGGGGTCCTGTGCCAATTAATTCACTTCCTGATGTCACTG...............................................................................................CGGAACCTCCTCGTAAAGATGGTGGGGAATTGCTTCTAAGTAAAACATTTCTTGATTCCTGTAGCTCCGTCTATGCTGTTTTTCCCGGCGGGCAGGAAAACCAAGGGCAACCTTTCGTCTCTAAACATTTTAATGTGATAGATCCTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736121" ref_strand="+" ref_description="SGN-E736121 [LC04BG06]">
      <seq>cttttgtgttagtttatggggtcctgtgccaattaattcacttcctgatgtcactgcggaacctcctcgtaaagatggtggggaattgcttctaagtaaaacatttcttgattcctgtagctccgtctatgctgtttttcccggcgggcaggaaaaccaagggcaacctttcgtctctaaacattttaatgtgatagatcctttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="53123" stop="54023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53423" g_stop="53478" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53479" i_stop="53573" i_length="95">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53574" g_stop="53723" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="206" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E736121" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>206</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53423" e_stop="53478"/>
          <exon e_start="53574" e_stop="53723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTGTTAGTTTATGGGGTCCTGTGCCAATTAATTCACTTCCTGATGTCACTGGTAATGACCATATGTAGAGTCATTTTTTTTAAAAAAAAATTCCTGTAGTTTGGATTAAGTTTATTTAATGGCTTAATTTGTTGTTCGTGTTACAGCGGAACCTCCTCGTAAAGATGGTGGGGAATTGCTTCTAAGTAAAACATTTCTTGATTCCTGTAGCTCCGTCTATGCTGTTTTTCCCGGCGGGCAGGAAAACCAAGGGCAACCTTTCGTCTCTAAACATTTTAATGTGATAGATCCTTTAC</genome_strand>
        <mrna_strand>CTTTTGTGTTAGTTTATGGGGTCCTGTGCCAATTAATTCACTTCCTGATGTCACTG...............................................................................................CGGAACCTCCTCGTAAAGATGGTGGGGAATTGCTTCTAAGTAAAACATTTCTTGATTCCTGTAGCTCCGTCTATGCTGTTTTTCCCGGCGGGCAGGAAAACCAAGGGCAACCTTTCGTCTCTAAACATTTTAATGTGATAGATCCTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737337" ref_strand="+" ref_description="SGN-E737337 [LC09BE07]">
      <seq>cttttgtgttagtttatggggtcctgtgccaattaattcacttcctgatgtcactgcggaacctcctcgtaaagatggtggggaattgcttctaagtaaaacatttcttgattcctgtagctccgtctatgctgtttttcccggcgggcaggaaaaccaagggcaacctttcgtctctaaacattttaatgtgatagatcctttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="53123" stop="54023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53423" g_stop="53478" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53479" i_stop="53573" i_length="95">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53574" g_stop="53723" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="206" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E737337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>206</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53423" e_stop="53478"/>
          <exon e_start="53574" e_stop="53723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTGTTAGTTTATGGGGTCCTGTGCCAATTAATTCACTTCCTGATGTCACTGGTAATGACCATATGTAGAGTCATTTTTTTTAAAAAAAAATTCCTGTAGTTTGGATTAAGTTTATTTAATGGCTTAATTTGTTGTTCGTGTTACAGCGGAACCTCCTCGTAAAGATGGTGGGGAATTGCTTCTAAGTAAAACATTTCTTGATTCCTGTAGCTCCGTCTATGCTGTTTTTCCCGGCGGGCAGGAAAACCAAGGGCAACCTTTCGTCTCTAAACATTTTAATGTGATAGATCCTTTAC</genome_strand>
        <mrna_strand>CTTTTGTGTTAGTTTATGGGGTCCTGTGCCAATTAATTCACTTCCTGATGTCACTG...............................................................................................CGGAACCTCCTCGTAAAGATGGTGGGGAATTGCTTCTAAGTAAAACATTTCTTGATTCCTGTAGCTCCGTCTATGCTGTTTTTCCCGGCGGGCAGGAAAACCAAGGGCAACCTTTCGTCTCTAAACATTTTAATGTGATAGATCCTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449056" ref_strand="+" ref_description="SGN-E449056 [cSTS-5-A8]">
      <seq>tgtgaaattgctcancaagtggctcggacacaatgatgcccattacaccaatgcttattgggcctggttctcggcaaagaacgactgataattctggggttattgcattttaccccactggaccaccagttccatttctaacgatgcttccaatatataatatttcacccgaggcaggaactcctgattcttcaacaagtcatataggaggagaagaatgcctagatcatagtgattcatcccataactttgatacatctgagggacttgatcactctgaagatttaactccatccagttctttcagaggggctacttctatggagccacctggtgaacgcaagcctgatatacttaacagtgactttgctagtcattggcaaaacttgcaatatggaaggttttgccaaaaccctagacatactggaccacttgtttatccttctccagtaatggtaccacctgcatattttcagggtcgtttcccgtgggatggtcctggaagacctcattcagccaacatgaacgtctttactcagctgatgagctgtggtcctcgtgtattgcccattgcacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="57876" stop="59039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58160" g_stop="58739" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E449056" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58160" e_stop="58739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAAATTGCTCAGACTAGTGACTCGGACACAATGATACCCATTACACCAATGCTTATTGGGCCTGGTTCTCGGCAAAGAACGACTGATAATTCTGGGGTTATTGCATTTTACCCCACTGGACCACCAGTTCCATTTCTAACTATGCTTCCAATATATAATATTTCACCTGAGGCAGGAACTCCTGATTCTTCAACAAGTCATTTAGGAGGAGAAGAATGCCTAGATCATAGTGATTCAGCCCATAACTTTGAGTTATCTGAGGGACTTGATCACTCTGAAGATTTAACTCCATCCAGTTCTTTCAGAGGGGCTACTTCTATGGAGCCACCTGGTGAACGGAAGCCTGATATACTTAACAGTGACTTTGCTAGTCATTGGCAAAACTTGCAATATGGAAGGTTTTGCCAAAACCCTAGACATACTGGACCACTAGTTTATCATTCTCCAGTAATGGTACCACCTGGATATTTACAGGGTCGTTTCCCATGGGATGGTCCTGGAAGACCTCATTCAGCCAACATGAACGTCTTTACTCAGCTGATGAGCTGTGGTCCTCGTGTATTGCCTATTTCACCCC</genome_strand>
        <mrna_strand>TGTGAAATTGCTCA-NCAAGTGGCTCGGACACAATGATGCCCATTACACCAATGCTTATTGGGCCTGGTTCTCGGCAAAGAACGACTGATAATTCTGGGGTTATTGCATTTTACCCCACTGGACCACCAGTTCCATTTCTAACGATGCTTCCAATATATAATATTTCACCCGAGGCAGGAACTCCTGATTCTTCAACAAGTCATATAGGAGGAGAAGAATGCCTAGATCATAGTGATTCATCCCATAACTTTGATACATCTGAGGGACTTGATCACTCTGAAGATTTAACTCCATCCAGTTCTTTCAGAGGGGCTACTTCTATGGAGCCACCTGGTGAACGCAAGCCTGATATACTTAACAGTGACTTTGCTAGTCATTGGCAAAACTTGCAATATGGAAGGTTTTGCCAAAACCCTAGACATACTGGACCACTTGTTTATCCTTCTCCAGTAATGGTACCACCTGCATATTTTCAGGGTCGTTTCCCGTGGGATGGTCCTGGAAGACCTCATTCAGCCAACATGAACGTCTTTACTCAGCTGATGAGCTGTGGTCCTCGTGTATTGCCCATTGCACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422777" ref_strand="+" ref_description="SGN-E422777 [STM-41-A3]">
      <seq>tgaaattgctcagacaagtggctcggacacaatgatgcccattacaccaatgcttattgggcctggttctcggcaaagaacgactgataattctggggttattgcattttaccccactggaccaccagttccatttctaacgatgcttccaatatataatatttcacccgaggcaggaactcctgattcttcaacaagtcatataggaggagaagaatgcctagatcatagtgattcatcccataactttgatacatctgagggacttgatcactctgaagatttaactccatccagttctttcagaggggctacttctatggagccacctggtgaacgcaagcctgatatacttaacagtgactttgctagtcattggcaaaacttgcaatatggaaggttttgccaaaaccctagacatactggaccacttgtttatccttctccagtaatggtaccacctgcatattttcagggtcgtttcccgtgggatgggcctggaagacctcattcagccaacatgaacgtctttactcagctgatgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="57862" stop="59009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58162" g_stop="58709" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E422777" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58162" e_stop="58709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTGCTCAGACTAGTGACTCGGACACAATGATACCCATTACACCAATGCTTATTGGGCCTGGTTCTCGGCAAAGAACGACTGATAATTCTGGGGTTATTGCATTTTACCCCACTGGACCACCAGTTCCATTTCTAACTATGCTTCCAATATATAATATTTCACCTGAGGCAGGAACTCCTGATTCTTCAACAAGTCATTTAGGAGGAGAAGAATGCCTAGATCATAGTGATTCAGCCCATAACTTTGAGTTATCTGAGGGACTTGATCACTCTGAAGATTTAACTCCATCCAGTTCTTTCAGAGGGGCTACTTCTATGGAGCCACCTGGTGAACGGAAGCCTGATATACTTAACAGTGACTTTGCTAGTCATTGGCAAAACTTGCAATATGGAAGGTTTTGCCAAAACCCTAGACATACTGGACCACTAGTTTATCATTCTCCAGTAATGGTACCACCTGGATATTTACAGGGTCGTTTCCCATGGGATGGTCCTGGAAGACCTCATTCAGCCAACATGAACGTCTTTACTCAGCTGATGAGCT</genome_strand>
        <mrna_strand>TGAAATTGCTCAGACAAGTGGCTCGGACACAATGATGCCCATTACACCAATGCTTATTGGGCCTGGTTCTCGGCAAAGAACGACTGATAATTCTGGGGTTATTGCATTTTACCCCACTGGACCACCAGTTCCATTTCTAACGATGCTTCCAATATATAATATTTCACCCGAGGCAGGAACTCCTGATTCTTCAACAAGTCATATAGGAGGAGAAGAATGCCTAGATCATAGTGATTCATCCCATAACTTTGATACATCTGAGGGACTTGATCACTCTGAAGATTTAACTCCATCCAGTTCTTTCAGAGGGGCTACTTCTATGGAGCCACCTGGTGAACGCAAGCCTGATATACTTAACAGTGACTTTGCTAGTCATTGGCAAAACTTGCAATATGGAAGGTTTTGCCAAAACCCTAGACATACTGGACCACTTGTTTATCCTTCTCCAGTAATGGTACCACCTGCATATTTTCAGGGTCGTTTCCCGTGGGATGGGCCTGGAAGACCTCATTCAGCCAACATGAACGTCTTTACTCAGCTGATGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249949" ref_strand="+" ref_description="SGN-E249949 [cLEG-4-K21]">
      <seq>tcagaggggctacttctatggagccacctggtgaacggaagcctgatatacttaacagtgactttgctagtcattggcaaaacttgcaatatggaaggttttgccaaaaccctagacatactggaccactagtttatcattctccagtaatggtaccacctggatatttacagggtcgtttcccatgggatggtcctggaagacctcattcagccaacatgaacgtctttactcagctgatgagctgtggtcctcgtgtattgcctatttcacccctacagtctgcttctaatagacctcctaatgtgtttccacggtatgttgatgagataccaagattccgtagcgggacagggacatacctgccaaatcctgtttcagttagggatcgacactcatctaatacaagaaggggaaattacaactatgagagaaacgataaccatgttgacagagaggggaattggaatatgaatccaaaatctcgtgctggtgggcgcaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="58164" stop="60416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58464" g_stop="58837" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58838" i_stop="59985" i_length="1148">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.564" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59986" g_stop="60116" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="505" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E249949" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58464" e_stop="58837"/>
          <exon e_start="59986" e_stop="60116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGGGGCTACTTCTATGGAGCCACCTGGTGAACGGAAGCCTGATATACTTAACAGTGACTTTGCTAGTCATTGGCAAAACTTGCAATATGGAAGGTTTTGCCAAAACCCTAGACATACTGGACCACTAGTTTATCATTCTCCAGTAATGGTACCACCTGGATATTTACAGGGTCGTTTCCCATGGGATGGTCCTGGAAGACCTCATTCAGCCAACATGAACGTCTTTACTCAGCTGATGAGCTGTGGTCCTCGTGTATTGCCTATTTCACCCCTACAGTCTGCTTCTAATAGACCTCCTAATGTGTTTCCACGGTATGTTGATGAGATACCAAGATTCCGTAGCGGGACAGGGACATACCTGCCAAATCCTGTAAGTAGTTGACTCATCAAACTTTTACATTATTAAATTTTATTTCTCTCTCTCTCTCTCTCTATTATGTCGCTTTAACTGATAGTAATTAGGTGGATGTTGGAGTGGCTCATCAGTTGTGAATGGGTACTTAGTTTCTTTATATATTCTTGGGCAATCCTCACCTCATGACCTAGTTTTGGAGTTGAATTAGTTCCAAGGTCCATTTCTTCATCTGATGTTAGTGCCAGATCTATCCCAATTCATGATTTACCCGATGTAGGGTCCCATGTTATATTGTACAATCTTCCAGATGTCCAGTCTTGAGCATGTTTCTGTGAGGGAGAGGGGGTCTTGGAAAATCTTCACCTAATCAGCTAGCTTCTAGGGTTGAGTTAGGCCCAAAGTTCAGTCTTCACTATGTATATCTTTTGTTTGAAAAAAAAATGCAACTCTCTCGTTTCTGAACCTCTTATTTGTGCTCATCCTGTTGTATGTAATCTATGGATTTGTTAATGCAATTCAATGTTTTCATTCTGTTCGTTTCACATAATGTTCAAGCATTAGTATAAAGAGTAAGGCTCAATGCCTCTTTTATTAGTCATTAGGGGGAGACAGCATTATCCTTGTCACTAATTCCACGAGAGATGTTCTTGAAAAGTGAATCTCAATGCTGCTTTACTTTTCAATGCTTTTGAGTTGATGTTTGCGGATGGTAACAGTCATTTATGTGCTAAATATGGGACAAATGAATCCGTGGTCTTTCCGTAAAACTAGATTTTATGTATACATTTTCTTAAGTTGGTACAATATTATTTGCTTGCATCCATACTACAAAAGATTAAATGGAACAGTTGGTTGAATGTTGAGTTATTTACCTTGAAGACTAGGGATCAAATCCCACTTCATACATTTTTCCTTTTTTTGGGGGGTGACATCCATGTTCTAAAAATCATAAATTCGCCTCTAGTTACAACAACATTTTGCCTATATTATGTCCATGAATCTTACATGCAGATTGCCTTTCTGTCCATTTGGGGGAAGCTTGATTTTGTGTATTTTAGTATTTATTCTTTTATTCTCTGTACGCAAGATCTTTTTAGATTGATATGTGCTTACTACATTTCAAGTTGATATTTTACCTTTGCAATTTGGTGTTGCGTCAGAAGGTTTCAGTTAGGGATCGACACTCATCTAATACAAGAAGGGGAAATTACAACTATGAGAGAAACGATAACCATGTTGACAGAGAGGGGAATTGGAATATGAATCCAAAATCTCGTGCTGGTGGGCGCAATTA</genome_strand>
        <mrna_strand>TCAGAGGGGCTACTTCTATGGAGCCACCTGGTGAACGGAAGCCTGATATACTTAACAGTGACTTTGCTAGTCATTGGCAAAACTTGCAATATGGAAGGTTTTGCCAAAACCCTAGACATACTGGACCACTAGTTTATCATTCTCCAGTAATGGTACCACCTGGATATTTACAGGGTCGTTTCCCATGGGATGGTCCTGGAAGACCTCATTCAGCCAACATGAACGTCTTTACTCAGCTGATGAGCTGTGGTCCTCGTGTATTGCCTATTTCACCCCTACAGTCTGCTTCTAATAGACCTCCTAATGTGTTTCCACGGTATGTTGATGAGATACCAAGATTCCGTAGCGGGACAGGGACATACCTGCCAAATCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAGTTAGGGATCGACACTCATCTAATACAAGAAGGGGAAATTACAACTATGAGAGAAACGATAACCATGTTGACAGAGAGGGGAATTGGAATATGAATCCAAAATCTCGTGCTGGTGGGCGCAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591891" ref_strand="+" ref_description="SGN-E591891 [45612]">
      <seq>cctagacatactggaccacttgtttatccttctccagtaatggtaccacctgcatattttcaggggtcgtttcccgtgggatggtcctggaagacctcattcagccaacatgaacgtctttactcagctgatgagctgtggtcctcgtgtattgcccattgcacccctacagtctgcttctaatagacctcctaatgtgtttccgcggtatgttgatgagataccaagattccgtagcgggacagggacatacctgccaaatcctgtttcagttagggatcgacactcatctaatacaagaagcgggcaattacaactatgagagaaaacggaataacccatgtttgaccagagaagggaattggaattatgaatccaaaatctccgtgcttggtgggcgcaatttattaccgcagccaatctgagaaatcaaactcaagagtggatcggttggcatccacgtgacagccggggagacagatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="58274" stop="60492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58574" g_stop="58837" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58838" i_stop="59985" i_length="1148">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.564" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59986" g_stop="60192" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="484" r_length="219" r_score="0.865"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E591891" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58574" e_stop="58837"/>
          <exon e_start="59986" e_stop="60192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGACATACTGGACCACTAGTTTATCATTCTCCAGTAATGGTACCACCTGGATATTTACA-GGGTCGTTTCCCATGGGATGGTCCTGGAAGACCTCATTCAGCCAACATGAACGTCTTTACTCAGCTGATGAGCTGTGGTCCTCGTGTATTGCCTATTTCACCCCTACAGTCTGCTTCTAATAGACCTCCTAATGTGTTTCCACGGTATGTTGATGAGATACCAAGATTCCGTAGCGGGACAGGGACATACCTGCCAAATCCTGTAAGTAGTTGACTCATCAAACTTTTACATTATTAAATTTTATTTCTCTCTCTCTCTCTCTCTATTATGTCGCTTTAACTGATAGTAATTAGGTGGATGTTGGAGTGGCTCATCAGTTGTGAATGGGTACTTAGTTTCTTTATATATTCTTGGGCAATCCTCACCTCATGACCTAGTTTTGGAGTTGAATTAGTTCCAAGGTCCATTTCTTCATCTGATGTTAGTGCCAGATCTATCCCAATTCATGATTTACCCGATGTAGGGTCCCATGTTATATTGTACAATCTTCCAGATGTCCAGTCTTGAGCATGTTTCTGTGAGGGAGAGGGGGTCTTGGAAAATCTTCACCTAATCAGCTAGCTTCTAGGGTTGAGTTAGGCCCAAAGTTCAGTCTTCACTATGTATATCTTTTGTTTGAAAAAAAAATGCAACTCTCTCGTTTCTGAACCTCTTATTTGTGCTCATCCTGTTGTATGTAATCTATGGATTTGTTAATGCAATTCAATGTTTTCATTCTGTTCGTTTCACATAATGTTCAAGCATTAGTATAAAGAGTAAGGCTCAATGCCTCTTTTATTAGTCATTAGGGGGAGACAGCATTATCCTTGTCACTAATTCCACGAGAGATGTTCTTGAAAAGTGAATCTCAATGCTGCTTTACTTTTCAATGCTTTTGAGTTGATGTTTGCGGATGGTAACAGTCATTTATGTGCTAAATATGGGACAAATGAATCCGTGGTCTTTCCGTAAAACTAGATTTTATGTATACATTTTCTTAAGTTGGTACAATATTATTTGCTTGCATCCATACTACAAAAGATTAAATGGAACAGTTGGTTGAATGTTGAGTTATTTACCTTGAAGACTAGGGATCAAATCCCACTTCATACATTTTTCCTTTTTTTGGGGGGTGACATCCATGTTCTAAAAATCATAAATTCGCCTCTAGTTACAACAACATTTTGCCTATATTATGTCCATGAATCTTACATGCAGATTGCCTTTCTGTCCATTTGGGGGAAGCTTGATTTTGTGTATTTTAGTATTTATTCTTTTATTCTCTGTACGCAAGATCTTTTTAGATTGATATGTGCTTACTACATTTCAAGTTGATATTTTACCTTTGCAATTTGGTGTTGCGTCAGAAGGTTTCAGTTAGGGATCGACACTCATCTAATACAAGAAG-GGGAAATTACAACTATGAGAG-AAAC-G-ATAA-CCATG-TTGA-CAGAGAGGGGAATTGGAA-TATGAATCCAAAATCT-CGTGC-TGGTGGGCGCAAT-TATAACCGCAGCCAATCTGAGAAATCAAACTCAAGAGTGGATCGGTTGGCATCCA-GTGACAGCCGGGCAGACAGATCA</genome_strand>
        <mrna_strand>CCTAGACATACTGGACCACTTGTTTATCCTTCTCCAGTAATGGTACCACCTGCATATTTTCAGGGGTCGTTTCCCGTGGGATGGTCCTGGAAGACCTCATTCAGCCAACATGAACGTCTTTACTCAGCTGATGAGCTGTGGTCCTCGTGTATTGCCCATTGCACCCCTACAGTCTGCTTCTAATAGACCTCCTAATGTGTTTCCGCGGTATGTTGATGAGATACCAAGATTCCGTAGCGGGACAGGGACATACCTGCCAAATCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAGTTAGGGATCGACACTCATCTAATACAAGAAGCGGGCAATTACAACTATGAGAGAAAACGGAATAACCCATGTTTGACCAGAGAAGGGAATTGGAATTATGAATCCAAAATCTCCGTGCTTGGTGGGCGCAATTTATTACCGCAGCCAATCTGAGAAATCAAACTCAAGAGTGGATCGGTTGGCATCCACGTGACAGCCGGGGAGACAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455646" ref_strand="+" ref_description="SGN-E455646 [cSTS-26-L12]">
      <seq>ccacttgtttatccttctccagtaatggtaccacctgcatattttcagggtcgtttcccgtgggatggtcctggaagacctcattcagccaacatgaacgtctttactcagctgatgagctgtggtcctcgtgtattgcccattgcacccctacagtctgcttctaatagacctcctaatgtgtttccgcggtatgttgatgagataccaagattccgtagcgggacagggacatacctgccaaatcctaaggtttcagttagggatcgacactcatctaatacaagaaggggcaattacaactatgagagaaacgataaccatgttgacagagaggggaattggaatatgaatccaaaatctcgtgctggtgggcgcaattataaccgcagccaatctgagaaatcaaactcaagagtggatcggttggcatccagtgacagccggggagacagatcatggagctcgcatagacatgattctgttccttatctgtcccaaaatggtcaattgcgtggaaattcaagccatagtggccctcctaatgtggcatatggcatgtatccattaacagcaatgaacccaagtggagtgacttcaaatgggcctggntggttcccctgttgtaatgctgtatccatttgaccaccatgctagttatggttcacaaggagaacaacttgagtttgggtctctgagttcagcagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="58289" stop="60749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58589" g_stop="58837" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58838" i_stop="59982" i_length="1145">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59983" g_stop="60449" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="708" r_length="459" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E455646" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58589" e_stop="58837"/>
          <exon e_start="59983" e_stop="60449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTAGTTTATCATTCTCCAGTAATGGTACCACCTGGATATTTACAGGGTCGTTTCCCATGGGATGGTCCTGGAAGACCTCATTCAGCCAACATGAACGTCTTTACTCAGCTGATGAGCTGTGGTCCTCGTGTATTGCCTATTTCACCCCTACAGTCTGCTTCTAATAGACCTCCTAATGTGTTTCCACGGTATGTTGATGAGATACCAAGATTCCGTAGCGGGACAGGGACATACCTGCCAAATCCTGTAAGTAGTTGACTCATCAAACTTTTACATTATTAAATTTTATTTCTCTCTCTCTCTCTCTCTATTATGTCGCTTTAACTGATAGTAATTAGGTGGATGTTGGAGTGGCTCATCAGTTGTGAATGGGTACTTAGTTTCTTTATATATTCTTGGGCAATCCTCACCTCATGACCTAGTTTTGGAGTTGAATTAGTTCCAAGGTCCATTTCTTCATCTGATGTTAGTGCCAGATCTATCCCAATTCATGATTTACCCGATGTAGGGTCCCATGTTATATTGTACAATCTTCCAGATGTCCAGTCTTGAGCATGTTTCTGTGAGGGAGAGGGGGTCTTGGAAAATCTTCACCTAATCAGCTAGCTTCTAGGGTTGAGTTAGGCCCAAAGTTCAGTCTTCACTATGTATATCTTTTGTTTGAAAAAAAAATGCAACTCTCTCGTTTCTGAACCTCTTATTTGTGCTCATCCTGTTGTATGTAATCTATGGATTTGTTAATGCAATTCAATGTTTTCATTCTGTTCGTTTCACATAATGTTCAAGCATTAGTATAAAGAGTAAGGCTCAATGCCTCTTTTATTAGTCATTAGGGGGAGACAGCATTATCCTTGTCACTAATTCCACGAGAGATGTTCTTGAAAAGTGAATCTCAATGCTGCTTTACTTTTCAATGCTTTTGAGTTGATGTTTGCGGATGGTAACAGTCATTTATGTGCTAAATATGGGACAAATGAATCCGTGGTCTTTCCGTAAAACTAGATTTTATGTATACATTTTCTTAAGTTGGTACAATATTATTTGCTTGCATCCATACTACAAAAGATTAAATGGAACAGTTGGTTGAATGTTGAGTTATTTACCTTGAAGACTAGGGATCAAATCCCACTTCATACATTTTTCCTTTTTTTGGGGGGTGACATCCATGTTCTAAAAATCATAAATTCGCCTCTAGTTACAACAACATTTTGCCTATATTATGTCCATGAATCTTACATGCAGATTGCCTTTCTGTCCATTTGGGGGAAGCTTGATTTTGTGTATTTTAGTATTTATTCTTTTATTCTCTGTACGCAAGATCTTTTTAGATTGATATGTGCTTACTACATTTCAAGTTGATATTTTACCTTTGCAATTTGGTGTTGCGTCAGAAGGTTTCAGTTAGGGATCGACACTCATCTAATACAAGAAGGGGAAATTACAACTATGAGAGAAACGATAACCATGTTGACAGAGAGGGGAATTGGAATATGAATCCAAAATCTCGTGCTGGTGGGCGCAATTATAACCGCAGCCAATCTGAGAAATCAAACTCAAGAGTGGATCGGTTGGCATCCAGTGACAGCCGGGCAGACAGATCATGGAGTTCACATAGACATGATTCTGTTCCTTATCTGTCCCAAAATGGCCAATTGCGTGGAAATTCAAGCCATAGTGGCCCTCCTAATGTGGCATATGGCATGTATCCATTAACAGCAATGAACCCAAGTGGACCGACTTCAAATGGGCCTGG-TGGTTCGCCTGTTGTGATGCTGTATCCATTTGACCACAATGCTAGTTATGGTTCTCAAGGTTCACAAGGAGAACAACTTGAGTTTGGGTCTCTGAGTTCAGCAGG</genome_strand>
        <mrna_strand>CCACTTGTTTATCCTTCTCCAGTAATGGTACCACCTGCATATTTTCAGGGTCGTTTCCCGTGGGATGGTCCTGGAAGACCTCATTCAGCCAACATGAACGTCTTTACTCAGCTGATGAGCTGTGGTCCTCGTGTATTGCCCATTGCACCCCTACAGTCTGCTTCTAATAGACCTCCTAATGTGTTTCCGCGGTATGTTGATGAGATACCAAGATTCCGTAGCGGGACAGGGACATACCTGCCAAATCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTTTCAGTTAGGGATCGACACTCATCTAATACAAGAAGGGGCAATTACAACTATGAGAGAAACGATAACCATGTTGACAGAGAGGGGAATTGGAATATGAATCCAAAATCTCGTGCTGGTGGGCGCAATTATAACCGCAGCCAATCTGAGAAATCAAACTCAAGAGTGGATCGGTTGGCATCCAGTGACAGCCGGGGAGACAGATCATGGAGCTCGCATAGACATGATTCTGTTCCTTATCTGTCCCAAAATGGTCAATTGCGTGGAAATTCAAGCCATAGTGGCCCTCCTAATGTGGCATATGGCATGTATCCATTAACAGCAATGAACCCAAGTGGAGTGACTTCAAATGGGCCTGGNTGGTTCCCCTGTTGTAATGCTGTATCCATTTGACCACCATGCTAGTTA------T---GGTTCACAAGGAGAACAACTTGAGTTTGGGTCTCTGAGTTCAGCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559896" ref_strand="+" ref_description="SGN-E559896 [19465]">
      <seq>cttatctgtcccaaaatggtcaattgcgtggaaattcaagccatagtggccctcctaatgtggcatatggcatgtatccattaacagcaatgaacccaagtggagtgacttcaaatgggcctggtggttcccctgttgtaatgctgtatccatttgaccacaatgctagttatggttcacaaggagaacaacttgagtttgggtctctgagttcagcaggtttctcaggtgcaaatgaacaacctcagccaggtgagggaaatcgacaacggggggcctttgaggaacagcgatttcatgcagtctctgggcaacggtcttctccagatcagccatcttcacctcatcatcaaaggtaaaccaaggaggatttagttagtttggaagatcagtggctggaaggaattattattaaagggtacaaattcgtcatccctttcatattaagctggaaagaagacaatgatttggtgatggaagaaacagtggtgaggggcaggtgtgttgctaccatccaatcatatcctcacttcagttttgcagtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="59921" stop="61234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60221" g_stop="60594" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60595" i_stop="60776" i_length="182">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60777" g_stop="60934" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="523" r_length="158" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E559896" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60221" e_stop="60594"/>
          <exon e_start="60777" e_stop="60934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATCTGTCCCAAAATGGCCAATTGCGTGGAAATTCAAGCCATAGTGGCCCTCCTAATGTGGCATATGGCATGTATCCATTAACAGCAATGAACCCAAGTGGACCGACTTCAAATGGGCCTGGTGGTTCGCCTGTTGTGATGCTGTATCCATTTGACCACAATGCTAGTTATGGTTCTCAAGGTTCACAAGGAGAACAACTTGAGTTTGGGTCTCTGAGTTCAGCAGGTTTCTCAGGTGCAAATGAACAACCTCAGCCAGGTGAGGGAAATCGACAACGGGGAGCCTTTGAGGAACATCGATTTCGTGCAGTTTCTGGGCAACGGTCTTCTCCAGATCAGCCATCTTCACCTCATCATCAAAGGTAAACGAAGGTAATATTTATGGTTTCCTCATGGGCTTTGTTCAAATCACGACTCTAGGGCATTTGTTCCAATTGCAGCGTCTCATTTGTGAAACTGAGCTGGTTTTGCCTTTAGGTTAACAGACAGTCTAGTCTTCTTATCTTCTCTGGTGATGAAACTTTCTTGACTTTTTCAATTCATATTACTAACAGGAGGATTTAGTTAGTTTGGAAGATCAGTGGCTGGAAGGAATTGTTATTAAAGGGTACAAATTCGACATCCCTTTCACATTAAGCTGGAAAGAAGACAATGATTTGGTGATGGAAGAAACAGTGGTGAGGGGCAGGTGTGTTGCTACCATCAAATGATA</genome_strand>
        <mrna_strand>CTTATCTGTCCCAAAATGGTCAATTGCGTGGAAATTCAAGCCATAGTGGCCCTCCTAATGTGGCATATGGCATGTATCCATTAACAGCAATGAACCCAAGTGGAGTGACTTCAAATGGGCCTGGTGGTTCCCCTGTTGTAATGCTGTATCCATTTGACCACAATGCTAGTTA------T---GGTTCACAAGGAGAACAACTTGAGTTTGGGTCTCTGAGTTCAGCAGGTTTCTCAGGTGCAAATGAACAACCTCAGCCAGGTGAGGGAAATCGACAACGGGGGGCCTTTGAGGAACAGCGATTTCATGCAGTCTCTGGGCAACGGTCTTCTCCAGATCAGCCATCTTCACCTCATCATCAAAGGTAAACCAAG......................................................................................................................................................................................GAGGATTTAGTTAGTTTGGAAGATCAGTGGCTGGAAGGAATTATTATTAAAGGGTACAAATTCGTCATCCCTTTCATATTAAGCTGGAAAGAAGACAATGATTTGGTGATGGAAGAAACAGTGGTGAGGGGCAGGTGTGTTGCTACCATCCAATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E611508" ref_strand="-" ref_description="SGN-E611508 [61260]">
      <seq>gtccccaaaaatggtcaattgcgttggaaattcaacccatagtgcccctcctaatgtgctatatggcatgtatccattgaacagcaatgaacccaagtggagtgacttcaaatgggcctggtggttcccctgttgtaatgctgtatccatttgaccacaatgctagttatggttcacaaggagaacaacttgagtttgggtctctgagttcagcaggtttctcaggtgcaaatgaacaacctcagccaggtgagggaaatcgacaacggggggcctttgaggaacagcgatttcatgcagtttctgggcaacggtcttctccagatcagccatcttcacctcatcatcaaaggtaaaccaaggaggatttagttagtttggaagatcagtggctggaaggaattattattaaagggtacaaattcgtcatccctttcatattaagctggaaagaagacaatgatttggtgatggaagaaacagtggtgaggggcaggtgtgttgctaccatccaatcatatcctcacttcagttttgcagtgaagatctggaccatgagaagttactcttcagattttgttagaaagtggtcacatctggtccttcagctcttagttttgtatgttagctatgaaatccttttttagctgcagcaaccctcttcaaagagatataggttttattctgttcttgtagatcattgaagtagaaactctttcaagaatttagagttcaaaacttgttatagtagttttaccataaaaaaaaaaaaaaaaaactcgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="59928" stop="61474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60226" g_stop="60594" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60595" i_stop="60776" i_length="182">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60777" g_stop="61174" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="770" r_length="408" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E611508" ref_strand="-">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611508" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60226" e_stop="60594"/>
          <exon e_start="60777" e_stop="61174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCCCAAAATGGCCAATTGCGT-GGAAATTCAAGCCATAGTGGCCCTCCTAATGTGGCATATGGCATGTATCCATT-AACAGCAATGAACCCAAGTGGACCGACTTCAAATGGGCCTGGTGGTTCGCCTGTTGTGATGCTGTATCCATTTGACCACAATGCTAGTTATGGTTCTCAAGGTTCACAAGGAGAACAACTTGAGTTTGGGTCTCTGAGTTCAGCAGGTTTCTCAGGTGCAAATGAACAACCTCAGCCAGGTGAGGGAAATCGACAACGGGGAGCCTTTGAGGAACATCGATTTCGTGCAGTTTCTGGGCAACGGTCTTCTCCAGATCAGCCATCTTCACCTCATCATCAAAGGTAAACGAAGGTAATATTTATGGTTTCCTCATGGGCTTTGTTCAAATCACGACTCTAGGGCATTTGTTCCAATTGCAGCGTCTCATTTGTGAAACTGAGCTGGTTTTGCCTTTAGGTTAACAGACAGTCTAGTCTTCTTATCTTCTCTGGTGATGAAACTTTCTTGACTTTTTCAATTCATATTACTAACAGGAGGATTTAGTTAGTTTGGAAGATCAGTGGCTGGAAGGAATTGTTATTAAAGGGTACAAATTCGACATCCCTTTCACATTAAGCTGGAAAGAAGACAATGATTTGGTGATGGAAGAAACAGTGGTGAGGGGCAGGTGTGTTGCTACCAT-C-A--A-ATGAT-AGTT---TTTT-CAGTGAAGATCTGGACCATGAGAAGTTACTCATCAGATTTTACTAGAAAGGGGTCACATCTGGTCCTTCTGCTCTTATTTTTGTATGTTAGCTATGAAATCCTTTTTTAGCTGCAGCAACCCTCTTCAACGAGATATAGGTTTTATTCTGTTCTTGTAGATCATTGAAGTAGAAACCTTTTCAAGAATTTAGAGTGTAAAACTTGTTATAGTAGTTTTACCATAAAAAAAAGA</genome_strand>
        <mrna_strand>GTCCCCAAAAATGGTCAATTGCGTTGGAAATTCAACCCATAGTGCCCCTCCTAATGTGCTATATGGCATGTATCCATTGAACAGCAATGAACCCAAGTGGAGTGACTTCAAATGGGCCTGGTGGTTCCCCTGTTGTAATGCTGTATCCATTTGACCACAATGCTAGTTA------T---GGTTCACAAGGAGAACAACTTGAGTTTGGGTCTCTGAGTTCAGCAGGTTTCTCAGGTGCAAATGAACAACCTCAGCCAGGTGAGGGAAATCGACAACGGGGGGCCTTTGAGGAACAGCGATTTCATGCAGTTTCTGGGCAACGGTCTTCTCCAGATCAGCCATCTTCACCTCATCATCAAAGGTAAACCAAG......................................................................................................................................................................................GAGGATTTAGTTAGTTTGGAAGATCAGTGGCTGGAAGGAATTATTATTAAAGGGTACAAATTCGTCATCCCTTTCATATTAAGCTGGAAAGAAGACAATGATTTGGTGATGGAAGAAACAGTGGTGAGGGGCAGGTGTGTTGCTACCATCCAATCATATCCTCACTTCAGTTTTGCAGTGAAGATCTGGACCATGAGAAGTTACTCTTCAGATTTTGTTAGAAAGTGGTCACATCTGGTCCTTCAGCTCTTAGTTTTGTATGTTAGCTATGAAATCCTTTTTTAGCTGCAGCAACCCTCTTCAAAGAGATATAGGTTTTATTCTGTTCTTGTAGATCATTGAAGTAGAAACTCTTTCAAGAATTTAGAGTTCAAAACTTGTTATAGTAGTTTTACCATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E596108" ref_strand="+" ref_description="SGN-E596108 [39395]">
      <seq>gtgacttcaaatgggcctggtggttcccctgttgtaatgctgtatccatttgaccacaatgctagttatggttcacaaggagaacaacttgagtttgggtctctgagttcagcaggtttctcaggtgcaaatgaacaacctcagccaggtgagggaaatcgacaacggggggcctttgaggaacagcgatttcatgcagtttctgggcaacggtcttctccagatcagccatcttcacctcatcatcaaaggtaaaccaaggaggatttagttagtttggaagatcagtggctggaaggaattattattaaagggtacaaattcgtcatccctttcatattaagctggaaagaagacaatgatttggtgatggaagaaacagtggtgaggggcaggtgtgttgctaccatccaatcatatcctcacttcagttttgcagtgaagatctggaccatgagaagttactcttcagattttgttagaaagtggtcacatctggtccttcagctcttagttttgtaatgttaagctatgaaatccttttttagctgcagcaaccctcttcaaagagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="60027" stop="61376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60325" g_stop="60594" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60595" i_stop="60776" i_length="182">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60777" g_stop="61076" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="573" r_length="312" r_score="0.877"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E596108" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60325" e_stop="60594"/>
          <exon e_start="60777" e_stop="61076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGACTTCAAATGGGCCTGGTGGTTCGCCTGTTGTGATGCTGTATCCATTTGACCACAATGCTAGTTATGGTTCTCAAGGTTCACAAGGAGAACAACTTGAGTTTGGGTCTCTGAGTTCAGCAGGTTTCTCAGGTGCAAATGAACAACCTCAGCCAGGTGAGGGAAATCGACAACGGGGAGCCTTTGAGGAACATCGATTTCGTGCAGTTTCTGGGCAACGGTCTTCTCCAGATCAGCCATCTTCACCTCATCATCAAAGGTAAACGAAGGTAATATTTATGGTTTCCTCATGGGCTTTGTTCAAATCACGACTCTAGGGCATTTGTTCCAATTGCAGCGTCTCATTTGTGAAACTGAGCTGGTTTTGCCTTTAGGTTAACAGACAGTCTAGTCTTCTTATCTTCTCTGGTGATGAAACTTTCTTGACTTTTTCAATTCATATTACTAACAGGAGGATTTAGTTAGTTTGGAAGATCAGTGGCTGGAAGGAATTGTTATTAAAGGGTACAAATTCGACATCCCTTTCACATTAAGCTGGAAAGAAGACAATGATTTGGTGATGGAAGAAACAGTGGTGAGGGGCAGGTGTGTTGCTACCAT-C-A--A-ATGAT-AGTT---TTTT-CAGTGAAGATCTGGACCATGAGAAGTTACTCATCAGATTTTACTAGAAAGGGGTCACATCTGGTCCTTCTGCTCTTATTTTTGT-ATGTT-AGCTATGAAATCCTTTTTTAGCTGCAGCAACCCTCTTCAACGAGAT</genome_strand>
        <mrna_strand>GTGACTTCAAATGGGCCTGGTGGTTCCCCTGTTGTAATGCTGTATCCATTTGACCACAATGCTAGTTA------T---GGTTCACAAGGAGAACAACTTGAGTTTGGGTCTCTGAGTTCAGCAGGTTTCTCAGGTGCAAATGAACAACCTCAGCCAGGTGAGGGAAATCGACAACGGGGGGCCTTTGAGGAACAGCGATTTCATGCAGTTTCTGGGCAACGGTCTTCTCCAGATCAGCCATCTTCACCTCATCATCAAAGGTAAACCAAG......................................................................................................................................................................................GAGGATTTAGTTAGTTTGGAAGATCAGTGGCTGGAAGGAATTATTATTAAAGGGTACAAATTCGTCATCCCTTTCATATTAAGCTGGAAAGAAGACAATGATTTGGTGATGGAAGAAACAGTGGTGAGGGGCAGGTGTGTTGCTACCATCCAATCATATCCTCACTTCAGTTTTGCAGTGAAGATCTGGACCATGAGAAGTTACTCTTCAGATTTTGTTAGAAAGTGGTCACATCTGGTCCTTCAGCTCTTAGTTTTGTAATGTTAAGCTATGAAATCCTTTTTTAGCTGCAGCAACCCTCTTCAAAGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417283" ref_strand="-" ref_description="SGN-E417283 [STM-25-K13]">
      <seq>ccagaggccaagaaaaaggtggaacgtgcgttagcccatatagatatgaaaaccaaagaatctgcataccaggcatggcttggttactataattccaacagggctatcggtaaggacaagtacagacttgttgaacttgcaaatgagtttagtcggactatggggcttgacaaccctccagcaatttcaaagcttgttcttgggaaaatgggattgaaaaatattcctggactacgttccaagtaagttgagatagtgttgcagcttcttctcatatatatatgcatacgaagtgtatatatacacagcacaagccgtgcaatgcaacaattgtttttcagctaagtgctgcttttacccattgtttgtaatttagttactagggaggattcaaagccttgacataacataagttgagttccttttttgctaataggaaatttggcctttcctctttctagttgaatattttgtctcttcatttattagtatgcgggaattacaaacacccacagttctccgcaaaaaaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="63389" stop="62087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63089" g_stop="63072" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63071" i_stop="62902" i_length="170">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62901" g_stop="62401" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="517" r_length="499" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E417283" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417283" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63089" e_stop="63072"/>
          <exon e_start="62901" e_stop="62401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAGGCCAAGAAAAAGGTTGGTATTAACTTTGCGTGAGCAATGTTTCTTTTGTAGCTTGGCATAATCTGAAGCTCAAAGCTGAATGTGGAGTATATTCTGTTCTTGAAGTTGTTTAATTCCTTGGTTTTCTCTGTTGGTTTTCTAAGTAACATTCTTTGGTAATAGCGACATAAATGCTTGTGTAGGTGGAACGTGCGTTAGCCCATATAGAAATGAAAACCAAAGAATCTGCATACCAGGCATGGCTTGGTTACTATAATTCCAACAGGTCTATCGGTAAGGACAAGTACAGACTTGTTGAACTTGCAAACGAGTTTAGTCGGACCATGGGGCTTGACAACCCTCCAGCAATTCCAAAGCTTGTTCTTGGGAAAATGGGATTGAAAAATATTCCTGGACTACGTTCCAAGTAA-TTGAGATAGTGTTGCTGCTTCTTCTCATACACATATATGCATACGAAGTGTATATATACACAGCATAGGCCGTGCAATGCAACAATTAATTTCGAGCTAAGTGCTGTTTTTACCCATTGTTTGTAATTTTTTTGCTAGGGAGGATTCAAAGCCTTGACAGAACATAAGTTGAGTTCCTTTTTTACTAATAGGAAATTTGGCCTTTCCTCTTTCTAGTTGAACTATTTTGTCTCTTCATTTATTAGTAAGTGGGAATTACAAACAGCCACAGTT</genome_strand>
        <mrna_strand>CCAGAGGCCAAGAAAAAG..........................................................................................................................................................................GTGGAACGTGCGTTAGCCCATATAGATATGAAAACCAAAGAATCTGCATACCAGGCATGGCTTGGTTACTATAATTCCAACAGGGCTATCGGTAAGGACAAGTACAGACTTGTTGAACTTGCAAATGAGTTTAGTCGGACTATGGGGCTTGACAACCCTCCAGCAATTTCAAAGCTTGTTCTTGGGAAAATGGGATTGAAAAATATTCCTGGACTACGTTCCAAGTAAGTTGAGATAGTGTTGCAGCTTCTTCTCAT--ATATATATGCATACGAAGTGTATATATACACAGCACAAGCCGTGCAATGCAACAATTGTTTTTCAGCTAAGTGCTGCTTTTACCCATTGTTTGTAATTTAGTTACTAGGGAGGATTCAAAGCCTTGACATAACATAAGTTGAGTTCCTTTTTTGCTAATAGGAAATTTGGCCTTTCCTCTTTCTAGTTGAA-TATTTTGTCTCTTCATTTATTAGTATGCGGGAATTACAAACACCCACAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406820" ref_strand="+" ref_description="SGN-E406820 [PPI-5-G17]">
      <seq>gaaaagaagacaaggcattttgttgttggctccatgggaggaattcttcttgtctacaattaaagatttgcccgtatcaaaggcgcctgtacctctgcttgatccagaggccaagaaaaaggtggaacgtgcgttagcccatatagatatgaaaaccaaagaatctgcataccaggcatggcttggttactataattccaacagggctatcggtaaggacaagtacagacttgttgaacttgcaaatgagtttagtcggactatggggcttgacaaccctccagcaatttcaaagcttgttcttgggaaaatgggattgaaaaatattcctggactacgttccaagtaagttgagatagtgttgcagcttcttctcatatatatatgcatacgaagtgtatatatatacacagcacaggccgtgcaatgcaacaattgtttttcagctaagtgctgcttttacccattgtttgtaatttagttactagggaggattcaaagccttgacataacataagttgagttccttttttgctaataggaaatttggccgttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="63493" stop="62169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63193" g_stop="63072" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63071" i_stop="62902" i_length="170">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62901" g_stop="62465" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="559" r_length="438" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E406820" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63193" e_stop="63072"/>
          <exon e_start="62901" e_stop="62465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAAGGACAAGGCATTTTGTTGTTGGCTCCATGGGAGGAATTCTTCTTGTCTACAATTAAAGATTTGCCCGTATCAAAGGCACCTGTACCTCTGCTTGATCCAGAGGCCAAGAAAAAGGTTGGTATTAACTTTGCGTGAGCAATGTTTCTTTTGTAGCTTGGCATAATCTGAAGCTCAAAGCTGAATGTGGAGTATATTCTGTTCTTGAAGTTGTTTAATTCCTTGGTTTTCTCTGTTGGTTTTCTAAGTAACATTCTTTGGTAATAGCGACATAAATGCTTGTGTAGGTGGAACGTGCGTTAGCCCATATAGAAATGAAAACCAAAGAATCTGCATACCAGGCATGGCTTGGTTACTATAATTCCAACAGGTCTATCGGTAAGGACAAGTACAGACTTGTTGAACTTGCAAACGAGTTTAGTCGGACCATGGGGCTTGACAACCCTCCAGCAATTCCAAAGCTTGTTCTTGGGAAAATGGGATTGAAAAATATTCCTGGACTACGTTCCAAGTAA-TTGAGATAGTGTTGCTGCTTCTTCTCATACACATATATGCATACGAAGTG--TATATATACACAGCATAGGCCGTGCAATGCAACAATTAATTTCGAGCTAAGTGCTGTTTTTACCCATTGTTTGTAATTTTTTTGCTAGGGAGGATTCAAAGCCTTGACAGAACATAAGTTGAGTTCCTTTTTTACTAATAGGAAATTTGGCCTTTCCTC</genome_strand>
        <mrna_strand>GAAAAGAA-GACAAGGCATTTTGTTGTTGGCTCCATGGGAGGAATTCTTCTTGTCTACAATTAAAGATTTGCCCGTATCAAAGGCGCCTGTACCTCTGCTTGATCCAGAGGCCAAGAAAAAG..........................................................................................................................................................................GTGGAACGTGCGTTAGCCCATATAGATATGAAAACCAAAGAATCTGCATACCAGGCATGGCTTGGTTACTATAATTCCAACAGGGCTATCGGTAAGGACAAGTACAGACTTGTTGAACTTGCAAATGAGTTTAGTCGGACTATGGGGCTTGACAACCCTCCAGCAATTTCAAAGCTTGTTCTTGGGAAAATGGGATTGAAAAATATTCCTGGACTACGTTCCAAGTAAGTTGAGATAGTGTTGCAGCTTCTTCTCAT--ATATATATGCATACGAAGTGTATATATATACACAGCACAGGCCGTGCAATGCAACAATTGTTTTTCAGCTAAGTGCTGCTTTTACCCATTGTTTGTAATTTAGTTACTAGGGAGGATTCAAAGCCTTGACATAACATAAGTTGAGTTCCTTTTTTGCTAATAGGAAATTTGGCCGTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420837" ref_strand="+" ref_description="SGN-E420837 [STM-31-H14]">
      <seq>gaaaagaagacaaggcattttgttgttggctccatgggaggaattcttcttgtctacaattaaagatttgcccgtatcaaaggcgcctgtacctctgcttgatccagaggccaagaaaaaggtggaacgtgcgttagcccatatagatatgaaaaccaaagaatctgcataccaggcatggcttggttactataattccaacagggctatcggtaaggacaagtacagacttgttgaacttgcaaatgagtttagtcggactatggggcttgacaaccctccagcaatttcaaagcttgttcttgggaaaatgggattgaaaaatattcctggactacgttccaagtaagttgagatagtgttgcagcttcttctcatatatatatgcatacgaagtgtatatatatacacagcacaggccgtgcaatgcaacaattgtttttcagctaagtgctgcttttacccattgtttgtaatttagttactagggaggattcaaagccttgacataacataagttgagttccttttttgctaataggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="63493" stop="62178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63193" g_stop="63072" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63071" i_stop="62902" i_length="170">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62901" g_stop="62478" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="546" r_length="425" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E420837" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63193" e_stop="63072"/>
          <exon e_start="62901" e_stop="62478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAAGGACAAGGCATTTTGTTGTTGGCTCCATGGGAGGAATTCTTCTTGTCTACAATTAAAGATTTGCCCGTATCAAAGGCACCTGTACCTCTGCTTGATCCAGAGGCCAAGAAAAAGGTTGGTATTAACTTTGCGTGAGCAATGTTTCTTTTGTAGCTTGGCATAATCTGAAGCTCAAAGCTGAATGTGGAGTATATTCTGTTCTTGAAGTTGTTTAATTCCTTGGTTTTCTCTGTTGGTTTTCTAAGTAACATTCTTTGGTAATAGCGACATAAATGCTTGTGTAGGTGGAACGTGCGTTAGCCCATATAGAAATGAAAACCAAAGAATCTGCATACCAGGCATGGCTTGGTTACTATAATTCCAACAGGTCTATCGGTAAGGACAAGTACAGACTTGTTGAACTTGCAAACGAGTTTAGTCGGACCATGGGGCTTGACAACCCTCCAGCAATTCCAAAGCTTGTTCTTGGGAAAATGGGATTGAAAAATATTCCTGGACTACGTTCCAAGTAA-TTGAGATAGTGTTGCTGCTTCTTCTCATACACATATATGCATACGAAGTG--TATATATACACAGCATAGGCCGTGCAATGCAACAATTAATTTCGAGCTAAGTGCTGTTTTTACCCATTGTTTGTAATTTTTTTGCTAGGGAGGATTCAAAGCCTTGACAGAACATAAGTTGAGTTCCTTTTTTACTAATAGGAAAT</genome_strand>
        <mrna_strand>GAAAAGAA-GACAAGGCATTTTGTTGTTGGCTCCATGGGAGGAATTCTTCTTGTCTACAATTAAAGATTTGCCCGTATCAAAGGCGCCTGTACCTCTGCTTGATCCAGAGGCCAAGAAAAAG..........................................................................................................................................................................GTGGAACGTGCGTTAGCCCATATAGATATGAAAACCAAAGAATCTGCATACCAGGCATGGCTTGGTTACTATAATTCCAACAGGGCTATCGGTAAGGACAAGTACAGACTTGTTGAACTTGCAAATGAGTTTAGTCGGACTATGGGGCTTGACAACCCTCCAGCAATTTCAAAGCTTGTTCTTGGGAAAATGGGATTGAAAAATATTCCTGGACTACGTTCCAAGTAAGTTGAGATAGTGTTGCAGCTTCTTCTCAT--ATATATATGCATACGAAGTGTATATATATACACAGCACAGGCCGTGCAATGCAACAATTGTTTTTCAGCTAAGTGCTGCTTTTACCCATTGTTTGTAATTTAGTTACTAGGGAGGATTCAAAGCCTTGACATAACATAAGTTGAGTTCCTTTTTTGCTAATAGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453634" ref_strand="+" ref_description="SGN-E453634 [cSTS-20-L11]">
      <seq>cttgagcagaaaaggatgcaagcaaatccctgtcagatacttgtggcgacacctgggagactcagagatcacgtagagaatacagcaggatttgctactcgattgatgggtgttaaagtgttggtccttgacgaagccgatcatttgttggatatgggattccgtaaagaaattgagagaatcatctctgctattccaaaacagcgccaaacacttctcttttctgcaacagttccaccggaggtccgtcaaatttgtcatattgctttgaaaagagaccatgaatttatcaatactgtcgaggaaggcagtgaagagacacatgcacaagttcagcagatgcatctggtttctcctctagaatcacacttttcgcttctttatgctctactaaaagaacacattgctgatgacgttaactataaggttcttgtattttgcacaactgcaatggtaacaaaactcgttgctgaacttcttggtgaacttaacttaaatgtccgggagattcattctcgtaagccacaaagctatagaacaagggtttcagatgaatttcgccagtctacaggtcttattctagtttcttcggatgtttctgctcgtggagtagattatccagatgttaccttagttgtacagattggagtgccagctgatagacagcagtatatccatcgtctaggtagaaccggacggaaaggaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="66090" stop="62888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65790" g_stop="65755" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65754" i_stop="64812" i_length="943">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64811" g_stop="64605" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="243" r_length="207" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64604" i_stop="64533" i_length="72">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.536" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64532" g_stop="64446" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="330" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64445" i_stop="64360" i_length="86">
            <donor d_prob="0.729" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64359" g_stop="64264" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="426" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64263" i_stop="63792" i_length="472">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63791" g_stop="63576" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="642" r_length="216" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63575" i_stop="63255" i_length="321">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63254" g_stop="63188" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="709" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E453634" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65790" e_stop="65755"/>
          <exon e_start="64811" e_stop="64605"/>
          <exon e_start="64532" e_stop="64446"/>
          <exon e_start="64359" e_stop="64264"/>
          <exon e_start="63791" e_stop="63576"/>
          <exon e_start="63254" e_stop="63188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGCAGAAAAGGATGCAAGCAAATCCATGTCAGGTAATTATTTCTTTGAGACTCCATTTTAAAAATAAAATATAGTATTTCTTTGAGAAGGGCACAGAAATCATGCCAGATGTAGTAGTTATTACTTTATTTCATTATAAAGTTCCTGCTTTATGAATAATATATACATGATTCTTGTGATAAATGAAGCAACAGCTAGCTGAGAAGAAGAAATTCATTTAGATGAAACCTCTGAAACATTAGTAAAATGTTTGGCGAGCTTAAGTTTTTGACGAATCGAAAAAGGAGGTTTTATTCTGTTTAACTGTTGGATACAATAATGTAGTACAACCACCATATATCTACTACAACAATAATGATATGCTTGTGTATTTGATTTAACATTGCAGGCATGGGGTTATTATAAGGGAAAATTAGGCCCTACATGATGAATATTAGAAGTGCTTCTCTTCTTTGATTCCATTGACCTCGCAAAGCACCTTTGTTAGATCAATAGTTGCTGACCTTCTTAGCTTAGTCTTAATTCATCTTTTCTATGCATCTGTCAGACTGAGCAAGGCTTGTTTATTAATTTTTTATGGAGAATGTGTCAGGCAAGTATTAGTGAAGATACAGATGGCCTGTTAAAAGGCCAATTTTTTAACCATCTCAGTGCATCCTATCATTGAGAATAAATATTTTTATTTGGTTATTCATGATTACCACTCTCCTTTCAAGCGAGAATGGGTGTAGCTGCAAGCCAGTTTAACTAATGATCAATTAATGACAGACTTGAACGTTTTTCTTGCTTCTATGCTTTAAAAAACTACTTTTTTTTTGGTTACCTATTCTTTTTTTAAAAAAACTACTTTTTTTATGTTGCTCTATATTGTCTTTAAATAATTGATACTGATTGACTTTTCACTTCCAAAAATAACTACTAATGCCACTTATCAAAAAGGAAATAATTACTAACGTTTTCCAATAAGCGACTCAGATACTTGTGGCGACACCTGGGAGACTCAGAGATCATGTAGAGAATACAGCAGGATTTGCTACTCGGTTGATGGGTGTTAAAGTGTTGGTCCTTGATGAAGCCGATCATTTGTTGGATATGGGATTCCGTAAAGAAATTGAGAGAATCATCTCTGCTATTCCAAAACAGCGCCAAACACTTCTCTTTTCTGCAACAGTTCCACCGGAGGTATTTTCTTAATTATTCTCCTGGAGTAAGTAGTATAAAGAGAAGGAAATGAATTTACCTCCGACTTTGCAGGTCCGTCAAATTTGTCATATTGCTTTGAAAAGAGACCACGAATTTATCAATACTGTTGAGGAAGGCAGTGAAGAGACACATGCACAAGTAGGTCTTGGTTATTTATTGGAGTTCCTAGGATTGATACCTTTGTTGGATCTGACTTGTTTTCTAATACTTTGTGAATTCTTCAGGTTCAGCAGATGCATCTGGTTTCTCCTCTAGAATCACACTTTTCCCTTCTTTATGCTCTACTAAAAGAGCACATTGCTGATGATGTTAACTATAAGGTATTTTACTTGTAAATTAGGATATTCTAGGCATTTTCTTTTCTGGGTTTCTTGAGGGGGGACAAGGAAAAGTAGGCCTGGAAAGTGTGACACTCTTGGAAAGTCACATTTATTGTGCTGCTCTTCTGGTTCATGTTATCAATCTGGCTCTTTGAATTGCTAGGAACAGTAAGATCCTGCTTGGATGGGCTCAAAACTTATGGCTTGTAAGCATAAGACATAAATTAGAGATCCCAACTTATGGCTTATTTTTGTTCTTTGACTTAAAAACATGTTCTTACAAGCACTTTTTTCATCTTCACCAAACACAACAAAAGTGCTTAAAAGCATATAAAATAAGCCGACCCAAACAGGCTCTAAGTCTCCCATAGCTTACTTGTCATATATCATTTATGGTATTTTTGAACTGGAAGTTCAAATAACAATCACTTGCAGAAGTCACCAACACTTTGATTCTGGTTCCCGAGTGCAGGTTCTTGTATTTTGCACAACTGCAATGGTAACAAAACTCGTTGCTGAACTTCTTGGTGAACTTAACTTAAACGTCCGGGAGATTCATTCTCGTAAGCCACAAAGCTATAGAACAAGGGTTTCAGATGAATTTCGCCAGTCAACAGGTCTTATTCTAGTTTCCTCAGATGTTTCTGCTCGTGGAGTGGATTATCCAGATGTTACCTTAGTTGTACAGGTATGTGTCAATTTGGGTTATATGTGATGTCATCTGGACAATATCAATTGTCCTTGGTGCTGTCTAGTGTTTAAATATCTATACCAAGCCAAGGTTGATATGTTTTTTTGTATGTAAGTTTTGTCTAAACTCTCTCCCCTGTGAAGAAATCAATCTTGCATTCTATCATGCAAAAGTTTAAAGTCATGCATTTGTTCTAAAGTTGGGTTTTGTTACTAGAGTATTTATAGCAGTTCATCTAGACAGATAATATGTCTTCTCGTCTGCTTGCTAATGGATATCATGTGTCTGTGGGCTTATGTCGACTCCTTTCTTTTGTAGATTGGAGTGCCAGCTGATAGACAGCAGTACATCCATCGTCTAGGTAGAACCGGACGGAAAGGAAAAG</genome_strand>
        <mrna_strand>CTTGAGCAGAAAAGGATGCAAGCAAATCCCTGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGTGGCGACACCTGGGAGACTCAGAGATCACGTAGAGAATACAGCAGGATTTGCTACTCGATTGATGGGTGTTAAAGTGTTGGTCCTTGACGAAGCCGATCATTTGTTGGATATGGGATTCCGTAAAGAAATTGAGAGAATCATCTCTGCTATTCCAAAACAGCGCCAAACACTTCTCTTTTCTGCAACAGTTCCACCGGAG........................................................................GTCCGTCAAATTTGTCATATTGCTTTGAAAAGAGACCATGAATTTATCAATACTGTCGAGGAAGGCAGTGAAGAGACACATGCACAA......................................................................................GTTCAGCAGATGCATCTGGTTTCTCCTCTAGAATCACACTTTTCGCTTCTTTATGCTCTACTAAAAGAACACATTGCTGATGACGTTAACTATAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGTATTTTGCACAACTGCAATGGTAACAAAACTCGTTGCTGAACTTCTTGGTGAACTTAACTTAAATGTCCGGGAGATTCATTCTCGTAAGCCACAAAGCTATAGAACAAGGGTTTCAGATGAATTTCGCCAGTCTACAGGTCTTATTCTAGTTTCTTCGGATGTTTCTGCTCGTGGAGTAGATTATCCAGATGTTACCTTAGTTGTACAG.................................................................................................................................................................................................................................................................................................................................ATTGGAGTGCCAGCTGATAGACAGCAGTATATCCATCGTCTAGGTAGAACCGGACGGAAAGGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561925" ref_strand="+" ref_description="SGN-E561925 [20386]">
      <seq>acttgtggcgacacctgggagactcaggagatcacgtagagaatacagcaggatttgctactcgattgatgggtgttaaagtgttggtccttggatgaagccgatcatttgttggatatgggattccgtaaagaaattgagagaatcatctctggctattccaaaacagcgccaaacacttctcttttctgcaacagttccaccggaggtccgtcaaatttgtcatattgctttgaaaagagaccatgaatttatcaatactgtcgaggaaggcagtgaagagacacatgcacaagttcagcagatgcatctggtttctcctctagaatcacacttttcgcttctttatgctctactaaaagaacacattgctgatgacgttaactataaggttcttgtattttgcacaactgcaatggtaacaaaactcgttgctgagcttcttggtgaacttaacttaaatgtccgggagattcattctcgtaagccacaaagctatagaacaagggtttcagatgaatttcgccagtctacaggtcttattctagctttcttcggatgtttctgctcgtggagtagattatccagatgttaccttagttgtacagattggagtgccagctgatagacagcaggtatatccatcggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="65109" stop="62917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64809" g_stop="64605" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64604" i_stop="64533" i_length="72">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.536" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64532" g_stop="64446" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="295" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64445" i_stop="64360" i_length="86">
            <donor d_prob="0.729" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64359" g_stop="64264" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="391" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64263" i_stop="63792" i_length="472">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63791" g_stop="63576" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="608" r_length="217" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63575" i_stop="63255" i_length="321">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63254" g_stop="63215" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="649" r_length="41" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E561925" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64809" e_stop="64605"/>
          <exon e_start="64532" e_stop="64446"/>
          <exon e_start="64359" e_stop="64264"/>
          <exon e_start="63791" e_stop="63576"/>
          <exon e_start="63254" e_stop="63215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTGGCGACACCTGGGAGACTCA-GAGATCATGTAGAGAATACAGCAGGATTTGCTACTCGGTTGATGGGTGTTAAAGTGTTGGTCCTT-GATGAAGCCGATCATTTGTTGGATATGGGATTCCGTAAAGAAATTGAGAGAATCATCTCT-GCTATTCCAAAACAGCGCCAAACACTTCTCTTTTCTGCAACAGTTCCACCGGAGGTATTTTCTTAATTATTCTCCTGGAGTAAGTAGTATAAAGAGAAGGAAATGAATTTACCTCCGACTTTGCAGGTCCGTCAAATTTGTCATATTGCTTTGAAAAGAGACCACGAATTTATCAATACTGTTGAGGAAGGCAGTGAAGAGACACATGCACAAGTAGGTCTTGGTTATTTATTGGAGTTCCTAGGATTGATACCTTTGTTGGATCTGACTTGTTTTCTAATACTTTGTGAATTCTTCAGGTTCAGCAGATGCATCTGGTTTCTCCTCTAGAATCACACTTTTCCCTTCTTTATGCTCTACTAAAAGAGCACATTGCTGATGATGTTAACTATAAGGTATTTTACTTGTAAATTAGGATATTCTAGGCATTTTCTTTTCTGGGTTTCTTGAGGGGGGACAAGGAAAAGTAGGCCTGGAAAGTGTGACACTCTTGGAAAGTCACATTTATTGTGCTGCTCTTCTGGTTCATGTTATCAATCTGGCTCTTTGAATTGCTAGGAACAGTAAGATCCTGCTTGGATGGGCTCAAAACTTATGGCTTGTAAGCATAAGACATAAATTAGAGATCCCAACTTATGGCTTATTTTTGTTCTTTGACTTAAAAACATGTTCTTACAAGCACTTTTTTCATCTTCACCAAACACAACAAAAGTGCTTAAAAGCATATAAAATAAGCCGACCCAAACAGGCTCTAAGTCTCCCATAGCTTACTTGTCATATATCATTTATGGTATTTTTGAACTGGAAGTTCAAATAACAATCACTTGCAGAAGTCACCAACACTTTGATTCTGGTTCCCGAGTGCAGGTTCTTGTATTTTGCACAACTGCAATGGTAACAAAACTCGTTGCTGAACTTCTTGGTGAACTTAACTTAAACGTCCGGGAGATTCATTCTCGTAAGCCACAAAGCTATAGAACAAGGGTTTCAGATGAATTTCGCCAGTCAACAGGTCTTATTCTAG-TTTCCTCAGATGTTTCTGCTCGTGGAGTGGATTATCCAGATGTTACCTTAGTTGTACAGGTATGTGTCAATTTGGGTTATATGTGATGTCATCTGGACAATATCAATTGTCCTTGGTGCTGTCTAGTGTTTAAATATCTATACCAAGCCAAGGTTGATATGTTTTTTTGTATGTAAGTTTTGTCTAAACTCTCTCCCCTGTGAAGAAATCAATCTTGCATTCTATCATGCAAAAGTTTAAAGTCATGCATTTGTTCTAAAGTTGGGTTTTGTTACTAGAGTATTTATAGCAGTTCATCTAGACAGATAATATGTCTTCTCGTCTGCTTGCTAATGGATATCATGTGTCTGTGGGCTTATGTCGACTCCTTTCTTTTGTAGATTGGAGTGCCAGCTGATAGACAGCA-GTACATCCATCGTC</genome_strand>
        <mrna_strand>ACTTGTGGCGACACCTGGGAGACTCAGGAGATCACGTAGAGAATACAGCAGGATTTGCTACTCGATTGATGGGTGTTAAAGTGTTGGTCCTTGGATGAAGCCGATCATTTGTTGGATATGGGATTCCGTAAAGAAATTGAGAGAATCATCTCTGGCTATTCCAAAACAGCGCCAAACACTTCTCTTTTCTGCAACAGTTCCACCGGAG........................................................................GTCCGTCAAATTTGTCATATTGCTTTGAAAAGAGACCATGAATTTATCAATACTGTCGAGGAAGGCAGTGAAGAGACACATGCACAA......................................................................................GTTCAGCAGATGCATCTGGTTTCTCCTCTAGAATCACACTTTTCGCTTCTTTATGCTCTACTAAAAGAACACATTGCTGATGACGTTAACTATAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGTATTTTGCACAACTGCAATGGTAACAAAACTCGTTGCTGAGCTTCTTGGTGAACTTAACTTAAATGTCCGGGAGATTCATTCTCGTAAGCCACAAAGCTATAGAACAAGGGTTTCAGATGAATTTCGCCAGTCTACAGGTCTTATTCTAGCTTTCTTCGGATGTTTCTGCTCGTGGAGTAGATTATCCAGATGTTACCTTAGTTGTACAG.................................................................................................................................................................................................................................................................................................................................ATTGGAGTGCCAGCTGATAGACAGCAGGTATATCCATCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E604014" ref_strand="+" ref_description="SGN-E604014 [67204]">
      <seq>caccttcaattggggttcaagttgttataggcggaacacggcttgcacttgagcagaaaaggatgcaagcaaatccctgtcagatacttgtggcgacacctgggagactcagagatcacgtagagaatacagcaggatttgctactcgattgatgggtgttaaagtgttggtccttgatgaagccgactcatttgttggatatgggattccgtcaaagaaattgagagactcatctctgctattccaataacagcgccaaacacttctcttttctgcaacagttccaccggaggtccgtcaaatttgtcatattgctttgaaaagagaccatgaatttatcaatactgtcgaggaaggcagtgaagagacacatgcacaagttcagcagatgcatctggtttctcctctagaatcacacttttcgcttctttatgctctactaaaagaacacattgctgatgacgttaactataaggttcttgtattttgcacaactgcaatggtaacaaaactcgttgctgagcttcttggtgaacttaacttaaatgtccgggagattcattctcgtaagccacaaagctatagaacaagggtttcagatgaatttcgccagtctacaggtcttatcctagtttcttcggatgttctgcgtcgtggagtagattatccagattgttaccttaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="66138" stop="63282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65838" g_stop="65755" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65754" i_stop="64812" i_length="943">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64811" g_stop="64605" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="293" r_length="210" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64604" i_stop="64533" i_length="72">
            <donor d_prob="0.965" d_score="0.96"/>
            <acceptor a_prob="0.536" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64532" g_stop="64446" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="380" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64445" i_stop="64360" i_length="86">
            <donor d_prob="0.729" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64359" g_stop="64264" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="476" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64263" i_stop="63792" i_length="472">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63791" g_stop="63586" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="683" r_length="207" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E604014" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65838" e_stop="65755"/>
          <exon e_start="64811" e_stop="64605"/>
          <exon e_start="64532" e_stop="64446"/>
          <exon e_start="64359" e_stop="64264"/>
          <exon e_start="63791" e_stop="63586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCTTCAATTGGGGTTCAAGTTGTTATAGGCGGAACAAGGCTTGCACTTGAGCAGAAAAGGATGCAAGCAAATCCATGTCAGGTAATTATTTCTTTGAGACTCCATTTTAAAAATAAAATATAGTATTTCTTTGAGAAGGGCACAGAAATCATGCCAGATGTAGTAGTTATTACTTTATTTCATTATAAAGTTCCTGCTTTATGAATAATATATACATGATTCTTGTGATAAATGAAGCAACAGCTAGCTGAGAAGAAGAAATTCATTTAGATGAAACCTCTGAAACATTAGTAAAATGTTTGGCGAGCTTAAGTTTTTGACGAATCGAAAAAGGAGGTTTTATTCTGTTTAACTGTTGGATACAATAATGTAGTACAACCACCATATATCTACTACAACAATAATGATATGCTTGTGTATTTGATTTAACATTGCAGGCATGGGGTTATTATAAGGGAAAATTAGGCCCTACATGATGAATATTAGAAGTGCTTCTCTTCTTTGATTCCATTGACCTCGCAAAGCACCTTTGTTAGATCAATAGTTGCTGACCTTCTTAGCTTAGTCTTAATTCATCTTTTCTATGCATCTGTCAGACTGAGCAAGGCTTGTTTATTAATTTTTTATGGAGAATGTGTCAGGCAAGTATTAGTGAAGATACAGATGGCCTGTTAAAAGGCCAATTTTTTAACCATCTCAGTGCATCCTATCATTGAGAATAAATATTTTTATTTGGTTATTCATGATTACCACTCTCCTTTCAAGCGAGAATGGGTGTAGCTGCAAGCCAGTTTAACTAATGATCAATTAATGACAGACTTGAACGTTTTTCTTGCTTCTATGCTTTAAAAAACTACTTTTTTTTTGGTTACCTATTCTTTTTTTAAAAAAACTACTTTTTTTATGTTGCTCTATATTGTCTTTAAATAATTGATACTGATTGACTTTTCACTTCCAAAAATAACTACTAATGCCACTTATCAAAAAGGAAATAATTACTAACGTTTTCCAATAAGCGACTCAGATACTTGTGGCGACACCTGGGAGACTCAGAGATCATGTAGAGAATACAGCAGGATTTGCTACTCGGTTGATGGGTGTTAAAGTGTTGGTCCTTGATGAAGCCGA-TCATTTGTTGGATATGGGATTCCGT-AAAGAAATTGAGAGAATCATCTCTGCTATTCCAA-AACAGCGCCAAACACTTCTCTTTTCTGCAACAGTTCCACCGGAGGTATTTTCTTAATTATTCTCCTGGAGTAAGTAGTATAAAGAGAAGGAAATGAATTTACCTCCGACTTTGCAGGTCCGTCAAATTTGTCATATTGCTTTGAAAAGAGACCACGAATTTATCAATACTGTTGAGGAAGGCAGTGAAGAGACACATGCACAAGTAGGTCTTGGTTATTTATTGGAGTTCCTAGGATTGATACCTTTGTTGGATCTGACTTGTTTTCTAATACTTTGTGAATTCTTCAGGTTCAGCAGATGCATCTGGTTTCTCCTCTAGAATCACACTTTTCCCTTCTTTATGCTCTACTAAAAGAGCACATTGCTGATGATGTTAACTATAAGGTATTTTACTTGTAAATTAGGATATTCTAGGCATTTTCTTTTCTGGGTTTCTTGAGGGGGGACAAGGAAAAGTAGGCCTGGAAAGTGTGACACTCTTGGAAAGTCACATTTATTGTGCTGCTCTTCTGGTTCATGTTATCAATCTGGCTCTTTGAATTGCTAGGAACAGTAAGATCCTGCTTGGATGGGCTCAAAACTTATGGCTTGTAAGCATAAGACATAAATTAGAGATCCCAACTTATGGCTTATTTTTGTTCTTTGACTTAAAAACATGTTCTTACAAGCACTTTTTTCATCTTCACCAAACACAACAAAAGTGCTTAAAAGCATATAAAATAAGCCGACCCAAACAGGCTCTAAGTCTCCCATAGCTTACTTGTCATATATCATTTATGGTATTTTTGAACTGGAAGTTCAAATAACAATCACTTGCAGAAGTCACCAACACTTTGATTCTGGTTCCCGAGTGCAGGTTCTTGTATTTTGCACAACTGCAATGGTAACAAAACTCGTTGCTGAACTTCTTGGTGAACTTAACTTAAACGTCCGGGAGATTCATTCTCGTAAGCCACAAAGCTATAGAACAAGGGTTTCAGATGAATTTCGCCAGTCAACAGGTCTTATTCTAGTTTCCTCAGATGTTTCTGC-TCGTGGAGTGGATTATCCAGA-TGTTACCTT</genome_strand>
        <mrna_strand>CACC-TTCAATTGGGGTTCAAGTTGTTATAGGCGGAACACGGCTTGCACTTGAGCAGAAAAGGATGCAAGCAAATCCCTGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGTGGCGACACCTGGGAGACTCAGAGATCACGTAGAGAATACAGCAGGATTTGCTACTCGATTGATGGGTGTTAAAGTGTTGGTCCTTGATGAAGCCGACTCATTTGTTGGATATGGGATTCCGTCAAAGAAATTGAGAGACTCATCTCTGCTATTCCAATAACAGCGCCAAACACTTCTCTTTTCTGCAACAGTTCCACCGGAG........................................................................GTCCGTCAAATTTGTCATATTGCTTTGAAAAGAGACCATGAATTTATCAATACTGTCGAGGAAGGCAGTGAAGAGACACATGCACAA......................................................................................GTTCAGCAGATGCATCTGGTTTCTCCTCTAGAATCACACTTTTCGCTTCTTTATGCTCTACTAAAAGAACACATTGCTGATGACGTTAACTATAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGTATTTTGCACAACTGCAATGGTAACAAAACTCGTTGCTGAGCTTCTTGGTGAACTTAACTTAAATGTCCGGGAGATTCATTCTCGTAAGCCACAAAGCTATAGAACAAGGGTTTCAGATGAATTTCGCCAGTCTACAGGTCTTATCCTAGTTTCTTCGGATG-TTCTGCGTCGTGGAGTAGATTATCCAGATTGTTACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E568517" ref_strand="+" ref_description="SGN-E568517 [12811]">
      <seq>gatcccccgggctgcaggttcaattggggttcaagttgttataggcggaacacggcttgcacttgagcagaaaaggatgcaagcaaatccctggtcagatacttgtggcgacacctgggagactcagagatcacgtagagaatacagcaggatttgctactcgattgatgggtgttaaagtgttggtccttgacgaagccgatcatttgttggatatgggattccgtaaagaaattgagagaatcatctctgctattccaaaacagcgccaaacacttctcttttctgcaacagttccaccggaggtccgtcaaatttgtcatattgctttgaaaagagaccatgaatttatcaatactgtcgaggaaggcagtgaagagacacatgcacaagttcagcagatgcatctggtttctcctctagaatcacacttttcgcttctttatgctctactaaaagaacacattgctgatgacgttaactataaggttcttgtattttgcacaactgcaatggtaacaaaactcgttgctgaacttcttggtgaacttaacttaaatgtccgggagattcattctcggtaagccacaaaggtatagaacaagggtttcagcatgaatttcgccagtctacaggtcttattctagtttcttcggatgtttctgctcgtggagtagattatccaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="66133" stop="63295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65833" g_stop="65760" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="92" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65759" i_stop="64820" i_length="940">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.125" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64819" g_stop="64605" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="305" r_length="213" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64604" i_stop="64533" i_length="72">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.536" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64532" g_stop="64446" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="392" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64445" i_stop="64360" i_length="86">
            <donor d_prob="0.729" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64359" g_stop="64264" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="488" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64263" i_stop="63792" i_length="472">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63791" g_stop="63595" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="687" r_length="199" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E568517" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65833" e_stop="65760"/>
          <exon e_start="64819" e_stop="64605"/>
          <exon e_start="64532" e_stop="64446"/>
          <exon e_start="64359" e_stop="64264"/>
          <exon e_start="63791" e_stop="63595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTGGGGTTCAAGTTGTTATAGGCGGAACAAGGCTTGCACTTGAGCAGAAAAGGATGCAAGCAAATCCATGTCAGGTAATTATTTCTTTGAGACTCCATTTTAAAAATAAAATATAGTATTTCTTTGAGAAGGGCACAGAAATCATGCCAGATGTAGTAGTTATTACTTTATTTCATTATAAAGTTCCTGCTTTATGAATAATATATACATGATTCTTGTGATAAATGAAGCAACAGCTAGCTGAGAAGAAGAAATTCATTTAGATGAAACCTCTGAAACATTAGTAAAATGTTTGGCGAGCTTAAGTTTTTGACGAATCGAAAAAGGAGGTTTTATTCTGTTTAACTGTTGGATACAATAATGTAGTACAACCACCATATATCTACTACAACAATAATGATATGCTTGTGTATTTGATTTAACATTGCAGGCATGGGGTTATTATAAGGGAAAATTAGGCCCTACATGATGAATATTAGAAGTGCTTCTCTTCTTTGATTCCATTGACCTCGCAAAGCACCTTTGTTAGATCAATAGTTGCTGACCTTCTTAGCTTAGTCTTAATTCATCTTTTCTATGCATCTGTCAGACTGAGCAAGGCTTGTTTATTAATTTTTTATGGAGAATGTGTCAGGCAAGTATTAGTGAAGATACAGATGGCCTGTTAAAAGGCCAATTTTTTAACCATCTCAGTGCATCCTATCATTGAGAATAAATATTTTTATTTGGTTATTCATGATTACCACTCTCCTTTCAAGCGAGAATGGGTGTAGCTGCAAGCCAGTTTAACTAATGATCAATTAATGACAGACTTGAACGTTTTTCTTGCTTCTATGCTTTAAAAAACTACTTTTTTTTTGGTTACCTATTCTTTTTTTAAAAAAACTACTTTTTTTATGTTGCTCTATATTGTCTTTAAATAATTGATACTGATTGACTTTTCACTTCCAAAAATAACTACTAATGCCACTTATCAAAAAGGAAATAATTACTAACGTTTTCCAATAAGCGACTCAGATACTTGTGGCGACACCTGGGAGACTCAGAGATCATGTAGAGAATACAGCAGGATTTGCTACTCGGTTGATGGGTGTTAAAGTGTTGGTCCTTGATGAAGCCGATCATTTGTTGGATATGGGATTCCGTAAAGAAATTGAGAGAATCATCTCTGCTATTCCAAAACAGCGCCAAACACTTCTCTTTTCTGCAACAGTTCCACCGGAGGTATTTTCTTAATTATTCTCCTGGAGTAAGTAGTATAAAGAGAAGGAAATGAATTTACCTCCGACTTTGCAGGTCCGTCAAATTTGTCATATTGCTTTGAAAAGAGACCACGAATTTATCAATACTGTTGAGGAAGGCAGTGAAGAGACACATGCACAAGTAGGTCTTGGTTATTTATTGGAGTTCCTAGGATTGATACCTTTGTTGGATCTGACTTGTTTTCTAATACTTTGTGAATTCTTCAGGTTCAGCAGATGCATCTGGTTTCTCCTCTAGAATCACACTTTTCCCTTCTTTATGCTCTACTAAAAGAGCACATTGCTGATGATGTTAACTATAAGGTATTTTACTTGTAAATTAGGATATTCTAGGCATTTTCTTTTCTGGGTTTCTTGAGGGGGGACAAGGAAAAGTAGGCCTGGAAAGTGTGACACTCTTGGAAAGTCACATTTATTGTGCTGCTCTTCTGGTTCATGTTATCAATCTGGCTCTTTGAATTGCTAGGAACAGTAAGATCCTGCTTGGATGGGCTCAAAACTTATGGCTTGTAAGCATAAGACATAAATTAGAGATCCCAACTTATGGCTTATTTTTGTTCTTTGACTTAAAAACATGTTCTTACAAGCACTTTTTTCATCTTCACCAAACACAACAAAAGTGCTTAAAAGCATATAAAATAAGCCGACCCAAACAGGCTCTAAGTCTCCCATAGCTTACTTGTCATATATCATTTATGGTATTTTTGAACTGGAAGTTCAAATAACAATCACTTGCAGAAGTCACCAACACTTTGATTCTGGTTCCCGAGTGCAGGTTCTTGTATTTTGCACAACTGCAATGGTAACAAAACTCGTTGCTGAACTTCTTGGTGAACTTAACTTAAACGTCCGGGAGATTCATTCTC-GTAAGCCACAAAGCTATAGAACAAGGGTTTCAG-ATGAATTTCGCCAGTCAACAGGTCTTATTCTAGTTTCCTCAGATGTTTCTGCTCGTGGAGTGGATTATCCAGA</genome_strand>
        <mrna_strand>TTCAATTGGGGTTCAAGTTGTTATAGGCGGAACACGGCTTGCACTTGAGCAGAAAAGGATGCAAGCAAATCCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-G-GTCAGATACTTGTGGCGACACCTGGGAGACTCAGAGATCACGTAGAGAATACAGCAGGATTTGCTACTCGATTGATGGGTGTTAAAGTGTTGGTCCTTGACGAAGCCGATCATTTGTTGGATATGGGATTCCGTAAAGAAATTGAGAGAATCATCTCTGCTATTCCAAAACAGCGCCAAACACTTCTCTTTTCTGCAACAGTTCCACCGGAG........................................................................GTCCGTCAAATTTGTCATATTGCTTTGAAAAGAGACCATGAATTTATCAATACTGTCGAGGAAGGCAGTGAAGAGACACATGCACAA......................................................................................GTTCAGCAGATGCATCTGGTTTCTCCTCTAGAATCACACTTTTCGCTTCTTTATGCTCTACTAAAAGAACACATTGCTGATGACGTTAACTATAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGTATTTTGCACAACTGCAATGGTAACAAAACTCGTTGCTGAACTTCTTGGTGAACTTAACTTAAATGTCCGGGAGATTCATTCTCGGTAAGCCACAAAGGTATAGAACAAGGGTTTCAGCATGAATTTCGCCAGTCTACAGGTCTTATTCTAGTTTCTTCGGATGTTTCTGCTCGTGGAGTAGATTATCCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559495" ref_strand="+" ref_description="SGN-E559495 [19000]">
      <seq>ctgtcagatacttgtggcgacacctgtcnagactcagagatcacgtagagaatacagcaggatttgctactcgattgatgggtgttaaagtgttggtccttgatgaagccgatcatttgttggatatgggattccgtaaagaaattgagagaatcatctctgctattccaaaacagcgccaaacacttctcttttctgcaacagttccaccggaggtccgtcaaatttgtcatattgctttgaaaagagaccatgaatttatcaatactgtcgaggaaggcagtgaagagacacatgcacaagttcagcagatgcatctggtttctcctctagaatcacacttttcgcttctttatgctctactaaaagaacacattgctgatgacgttaactataaggttcttgtattttgcacaactgcaatggtaacaaaactcgttgctgagcttcttggtgaacttaacttaaatgtccgggagattcattctcgtaagccacaaagctatagaacaagggtttcagatgaatttcgccagtctacaggtcttattctagtttctccggatgtttctgctcgtggagtagattatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="65115" stop="63297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64818" g_stop="64605" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64604" i_stop="64533" i_length="72">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.536" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64532" g_stop="64446" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="302" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64445" i_stop="64360" i_length="86">
            <donor d_prob="0.729" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64359" g_stop="64264" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="398" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64263" i_stop="63792" i_length="472">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63791" g_stop="63597" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="593" r_length="195" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E559495" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64818" e_stop="64605"/>
          <exon e_start="64532" e_stop="64446"/>
          <exon e_start="64359" e_stop="64264"/>
          <exon e_start="63791" e_stop="63597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCAGATACTTGTGGCGACACCTG-GGAGACTCAGAGATCATGTAGAGAATACAGCAGGATTTGCTACTCGGTTGATGGGTGTTAAAGTGTTGGTCCTTGATGAAGCCGATCATTTGTTGGATATGGGATTCCGTAAAGAAATTGAGAGAATCATCTCTGCTATTCCAAAACAGCGCCAAACACTTCTCTTTTCTGCAACAGTTCCACCGGAGGTATTTTCTTAATTATTCTCCTGGAGTAAGTAGTATAAAGAGAAGGAAATGAATTTACCTCCGACTTTGCAGGTCCGTCAAATTTGTCATATTGCTTTGAAAAGAGACCACGAATTTATCAATACTGTTGAGGAAGGCAGTGAAGAGACACATGCACAAGTAGGTCTTGGTTATTTATTGGAGTTCCTAGGATTGATACCTTTGTTGGATCTGACTTGTTTTCTAATACTTTGTGAATTCTTCAGGTTCAGCAGATGCATCTGGTTTCTCCTCTAGAATCACACTTTTCCCTTCTTTATGCTCTACTAAAAGAGCACATTGCTGATGATGTTAACTATAAGGTATTTTACTTGTAAATTAGGATATTCTAGGCATTTTCTTTTCTGGGTTTCTTGAGGGGGGACAAGGAAAAGTAGGCCTGGAAAGTGTGACACTCTTGGAAAGTCACATTTATTGTGCTGCTCTTCTGGTTCATGTTATCAATCTGGCTCTTTGAATTGCTAGGAACAGTAAGATCCTGCTTGGATGGGCTCAAAACTTATGGCTTGTAAGCATAAGACATAAATTAGAGATCCCAACTTATGGCTTATTTTTGTTCTTTGACTTAAAAACATGTTCTTACAAGCACTTTTTTCATCTTCACCAAACACAACAAAAGTGCTTAAAAGCATATAAAATAAGCCGACCCAAACAGGCTCTAAGTCTCCCATAGCTTACTTGTCATATATCATTTATGGTATTTTTGAACTGGAAGTTCAAATAACAATCACTTGCAGAAGTCACCAACACTTTGATTCTGGTTCCCGAGTGCAGGTTCTTGTATTTTGCACAACTGCAATGGTAACAAAACTCGTTGCTGAACTTCTTGGTGAACTTAACTTAAACGTCCGGGAGATTCATTCTCGTAAGCCACAAAGCTATAGAACAAGGGTTTCAGATGAATTTCGCCAGTCAACAGGTCTTATTCTAGTTTCCTCAGATGTTTCTGCTCGTGGAGTGGATTATCCA</genome_strand>
        <mrna_strand>CTGTCAGATACTTGTGGCGACACCTGTCNAGACTCAGAGATCACGTAGAGAATACAGCAGGATTTGCTACTCGATTGATGGGTGTTAAAGTGTTGGTCCTTGATGAAGCCGATCATTTGTTGGATATGGGATTCCGTAAAGAAATTGAGAGAATCATCTCTGCTATTCCAAAACAGCGCCAAACACTTCTCTTTTCTGCAACAGTTCCACCGGAG........................................................................GTCCGTCAAATTTGTCATATTGCTTTGAAAAGAGACCATGAATTTATCAATACTGTCGAGGAAGGCAGTGAAGAGACACATGCACAA......................................................................................GTTCAGCAGATGCATCTGGTTTCTCCTCTAGAATCACACTTTTCGCTTCTTTATGCTCTACTAAAAGAACACATTGCTGATGACGTTAACTATAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGTATTTTGCACAACTGCAATGGTAACAAAACTCGTTGCTGAGCTTCTTGGTGAACTTAACTTAAATGTCCGGGAGATTCATTCTCGTAAGCCACAAAGCTATAGAACAAGGGTTTCAGATGAATTTCGCCAGTCTACAGGTCTTATTCTAGTTTCTCCGGATGTTTCTGCTCGTGGAGTAGATTATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471283" ref_strand="+" ref_description="SGN-E471283 [cSTB-23-O12]">
      <seq>ttgctactcgattgatgggtgttaaagtgttggtccttgacgaagccgatcatttgttggatatgggattccgtaaagaaattgagagaatcatctctgctattccaaaacagcgccaaacacttctcttttctgcaacagttccaccggaggtccgtcaaatttgtcatattgctttgaaaagagaccatgaatttatcaatactgtcgaggaaggcagtgaagagacacatgcacaagttcagcagatgcatctggtttctcctctagaatcacacttttcgcttctttatgctctactaaaagaacacattgctgatgacgttaactataaggttcttgtattttgcacaactgcaatggtaacaaaactcgttgctgaacttcttggtgaacttaacttaaatgtccgggagattcattctcgtaagccacaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="65056" stop="63387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64756" g_stop="64605" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64604" i_stop="64533" i_length="72">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.536" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64532" g_stop="64446" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="239" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64445" i_stop="64360" i_length="86">
            <donor d_prob="0.729" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64359" g_stop="64264" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="335" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64263" i_stop="63792" i_length="472">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63791" g_stop="63687" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="440" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E471283" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64756" e_stop="64605"/>
          <exon e_start="64532" e_stop="64446"/>
          <exon e_start="64359" e_stop="64264"/>
          <exon e_start="63791" e_stop="63687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTACTCGGTTGATGGGTGTTAAAGTGTTGGTCCTTGATGAAGCCGATCATTTGTTGGATATGGGATTCCGTAAAGAAATTGAGAGAATCATCTCTGCTATTCCAAAACAGCGCCAAACACTTCTCTTTTCTGCAACAGTTCCACCGGAGGTATTTTCTTAATTATTCTCCTGGAGTAAGTAGTATAAAGAGAAGGAAATGAATTTACCTCCGACTTTGCAGGTCCGTCAAATTTGTCATATTGCTTTGAAAAGAGACCACGAATTTATCAATACTGTTGAGGAAGGCAGTGAAGAGACACATGCACAAGTAGGTCTTGGTTATTTATTGGAGTTCCTAGGATTGATACCTTTGTTGGATCTGACTTGTTTTCTAATACTTTGTGAATTCTTCAGGTTCAGCAGATGCATCTGGTTTCTCCTCTAGAATCACACTTTTCCCTTCTTTATGCTCTACTAAAAGAGCACATTGCTGATGATGTTAACTATAAGGTATTTTACTTGTAAATTAGGATATTCTAGGCATTTTCTTTTCTGGGTTTCTTGAGGGGGGACAAGGAAAAGTAGGCCTGGAAAGTGTGACACTCTTGGAAAGTCACATTTATTGTGCTGCTCTTCTGGTTCATGTTATCAATCTGGCTCTTTGAATTGCTAGGAACAGTAAGATCCTGCTTGGATGGGCTCAAAACTTATGGCTTGTAAGCATAAGACATAAATTAGAGATCCCAACTTATGGCTTATTTTTGTTCTTTGACTTAAAAACATGTTCTTACAAGCACTTTTTTCATCTTCACCAAACACAACAAAAGTGCTTAAAAGCATATAAAATAAGCCGACCCAAACAGGCTCTAAGTCTCCCATAGCTTACTTGTCATATATCATTTATGGTATTTTTGAACTGGAAGTTCAAATAACAATCACTTGCAGAAGTCACCAACACTTTGATTCTGGTTCCCGAGTGCAGGTTCTTGTATTTTGCACAACTGCAATGGTAACAAAACTCGTTGCTGAACTTCTTGGTGAACTTAACTTAAACGTCCGGGAGATTCATTCTCGTAAGCCACAAAGC</genome_strand>
        <mrna_strand>TTGCTACTCGATTGATGGGTGTTAAAGTGTTGGTCCTTGACGAAGCCGATCATTTGTTGGATATGGGATTCCGTAAAGAAATTGAGAGAATCATCTCTGCTATTCCAAAACAGCGCCAAACACTTCTCTTTTCTGCAACAGTTCCACCGGAG........................................................................GTCCGTCAAATTTGTCATATTGCTTTGAAAAGAGACCATGAATTTATCAATACTGTCGAGGAAGGCAGTGAAGAGACACATGCACAA......................................................................................GTTCAGCAGATGCATCTGGTTTCTCCTCTAGAATCACACTTTTCGCTTCTTTATGCTCTACTAAAAGAACACATTGCTGATGACGTTAACTATAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGTATTTTGCACAACTGCAATGGTAACAAAACTCGTTGCTGAACTTCTTGGTGAACTTAACTTAAATGTCCGGGAGATTCATTCTCGTAAGCCACAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E687795" ref_strand="+" ref_description="SGN-E687795 [T3_tus_81_A23]">
      <seq>aagaaagtgaagaatctgatgaagacaatgaggtcgaggatgaaaagatggcctcattggaggaggacagtccaagggcatcaagcccgagctcacatggaaaaagtgattcccacctcaccgaaaccaggtttgatcagtttcctctctctcccttgtctctgaaaggagttaaagatgctggatacaaaacgatgactgtagtgcaggaggcaacccttcccattattctaaaagtgcctgttgtaatccattgtatttggtaggcaaggacgttctggccaaggcaaagactggcactgggaaaactgtagcatttttgcttccttcaattgaagttgttgtaaaatcaccccccaacacccgtgatcaaaagaggccaccaattctggtgcttgtgatatgccctacccgggagcttgcaactcaagcagctgccgaggccaacaccttgttaaaatatcacccttcaattggggttcaagttgttataggcggaacaaggcttgcacttgagcagaaaaggatgcaagcaaatccatgtcagatacttgtggcgacacctgggagactcagagatcatgtagagaatacagcaggatttgctactcggttgatgggtgttaaagtgttggtccttgatgaagccgatcatttgttggatatgggattccgtaaagaaattgagagaatcatctctgctattccaaaacagcgccaaacacttctcttttctgcaacagttccaccggaggtcccgcaaatttgtcatattgctttgaaaaagagaccacgaatttatcaatactgttgaggaaagcagtgaagagacacatgcacaagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="68716" stop="64144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68416" g_stop="68287" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68286" i_stop="67654" i_length="633">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67653" g_stop="67547" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="237" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67546" i_stop="67312" i_length="235">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67311" g_stop="67227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="322" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67226" i_stop="65980" i_length="1247">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.634" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65979" g_stop="65755" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="547" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65754" i_stop="64812" i_length="943">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64811" g_stop="64605" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="754" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64604" i_stop="64533" i_length="72">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.536" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64532" g_stop="64446" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="755" r_stop="842" r_length="88" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E687795" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68416" e_stop="68287"/>
          <exon e_start="67653" e_stop="67547"/>
          <exon e_start="67311" e_stop="67227"/>
          <exon e_start="65979" e_stop="65755"/>
          <exon e_start="64811" e_stop="64605"/>
          <exon e_start="64532" e_stop="64446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGTGAAGAATCTGATGAAGACAATGAGGTCGAGGATGAAAAGATGGCCTCATTGGAGGAGGACAGTCCAAGGGCATCAAGCCCGAGCTCACATGGAAAAAGTGATTCCCACCTCACCGAAACCAGGTAATGTATAAACTCATGTCTCGCTATGTATCACACAGCATGCTAGTTAGGATCTTTTTTGAATAGCTGTCTCGTGCTCTTACAAGCATGATGCTAGAATAATGAACAAATTATAGCATTCACATATATGATCCAGAGGTTTGTGAATCTTTTGCCAGAAAGCAACGTGGATTTGGATTGTTGTTATTTGTATTTCTAAATCGCTGAGTTAGGATTTAGATATGTGATAGTTGCAGGTTGCTATTAGCGAATATGTTAAATGAACATAGAAAGAAGATAATCCAGGAAGATTTAGTGGATTAGCTATCATCAAGTACTATGGGAAGAAGAGAGACACTGTATATGCTTAATTAATGTATAGGCTAACTTAATGAAGGGGTTGAGCGTATGAATCATGCTTCATCAATTAGTTGAAAGTGGCTTTTTTGCTTGACTCTACACAATCAGAGGGATTTTGCCCAAAAATGTGGTAAATTTTCCAGTTAGATGGAATTTCTGTTGAACTTCTAATTATCAAGGCAGTTGTAGTGAAATATTGTTGTTCATGCTCTTAAGTAACCTGAAGGTAAATTAAATTCTTTTGTCAATTTATCTTTATTATATTAGATAATATTTGTTTCCATTTCCCTGCAGGTTTGATCAGTTTCCTCTCTCTCCCTTGTCTCTGAAAGGAGTTAAAGATGCTGGATACAAAACGATGACTGTAGTGCAGGAGGCAACCCTTCCCATTATTCTAAAAGGTGAGTTTTTATATTTTGCAGAAGCTAGAAGCATAGTGAGTTGAGATGTCATTCATCAGTTAGTAATAGAGGTTGATGGCTTTGTAAATAATATGTCCAGTTGTGTTACTTCAAGCAGTCTGGAAACTACATGCAGAAATATACTATGTATTAGAGTGCTATCCCAGCCTTCTTTGTTGCTAGGATTTTTATTTTTTTTGTCTTATTCATTTATTGTATGTGTTATTGATGACAGTGCCTGTTGTAATCCATTGTATTTGGTAGGCAAGGACGTTCTGGCCAAGGCAAAGACTGGCACTGGGAAAACTGTAGCATTTTTGGTAAAACACTACGTCTTTTCCATCAGAGAGTATCTTTTCATGTATGAATAAGAAAAAAATCGTCACACGCAATCACTGATATAACAAATGGATTTTATACTCGTTTATGTCACCTGTTAATTGGTATTCCATTTTCTTGCTAGTTTATAACTTTCATAGTGACTTGTATAATTGAACACCCCTATATACCAGATTTCTTGGAACAGGACTGATGTCAACACCATTATTTGAATTGAAGGATGAGTATCTTCAAGTTGTAATGTTACCAATACATGCATTCTTTTGGTTTGTTGAACGTGAATAGAAGTGAAAGCCACTATTTGCTGAAGTTCTTCAGAAAATAGAATTGCTCTATGTAAAGACAAGGGTTTGAACCCCATAGTTTTGTCCCCTTAAAACAAAAAAAAAATCTTACTGGTTTAGTTTGTTATTTTTTGGTGTTCCGTTTCCCTTGAAGTTTTTAGTTAAAGTTTTTCATTTTTTTAGTTCCGTAGAAATTAATAAAGTTAGTTGTATGCCATGAAACAACCAAGTTGTAAGCAGGTGTGATTTCACTATTAAAAATTGTTTAACCAATTTTAACAAGTTAAATTATATTTAAACATGAAATTTCTTTTGTTGCACAAAAAGGTGGTGATAGTCTGCTAATTTTGAGTCCCAACATTTCTCTGCTTTTATATGACGTGTTTCTCAATATGCTGGGTAATTATTGTTCTTTGGTACAAGTATATGCTGTTTTCGTACTTCGCTTCACACTTAAGGAAAAAGCATTATATATAACAAGAAATGGAAAAACTAGAGGGAAGCTAAAACATTTTAGTACACATAATAATTGAGGACAAAGTTCGTATCCATCTTGGGTCATGGGTTTTGCCTTTTTGATATTTTTTAACTTTAGATCTTAGGTATACTGCAGTTACACAACATTCAGTGATTATTAGATTTTCTGATAGTCAACTTGTCTCATTTGTCCACAGCTGCCTTTTACTTTTTAATTTCTTTCCTATTAAGAAACCAGAAAGCAGAGCTTCAACACCTATTTTGTGATTGAGTTATGGCTTTGAAATGGATTCTGTTAACCTAATCCTTTTTAATTAATTAAATATCAACTCAGTTAAATTAGTCATGTTAAAGATTCTCCAAATATTGATATAGATTTTTCATGGTCATTTTAAAATTTATCCGAGAAAATGACTGGCATCTCTGATATCACGTTGGCCTAAACCATTCTAGTACTTATATTTCAGCTTCCTTCAATTGAAGTTGTTGTAAAATCACCCCCCAACACCCGTGATCAAAAGAGGCCACCAATTCTGGTGCTTGTGATATGCCCTACCCGGGAGCTTGCAACTCAAGCAGCTGCCGAGGCCAACACCTTGTTAAAATATCACCCTTCAATTGGGGTTCAAGTTGTTATAGGCGGAACAAGGCTTGCACTTGAGCAGAAAAGGATGCAAGCAAATCCATGTCAGGTAATTATTTCTTTGAGACTCCATTTTAAAAATAAAATATAGTATTTCTTTGAGAAGGGCACAGAAATCATGCCAGATGTAGTAGTTATTACTTTATTTCATTATAAAGTTCCTGCTTTATGAATAATATATACATGATTCTTGTGATAAATGAAGCAACAGCTAGCTGAGAAGAAGAAATTCATTTAGATGAAACCTCTGAAACATTAGTAAAATGTTTGGCGAGCTTAAGTTTTTGACGAATCGAAAAAGGAGGTTTTATTCTGTTTAACTGTTGGATACAATAATGTAGTACAACCACCATATATCTACTACAACAATAATGATATGCTTGTGTATTTGATTTAACATTGCAGGCATGGGGTTATTATAAGGGAAAATTAGGCCCTACATGATGAATATTAGAAGTGCTTCTCTTCTTTGATTCCATTGACCTCGCAAAGCACCTTTGTTAGATCAATAGTTGCTGACCTTCTTAGCTTAGTCTTAATTCATCTTTTCTATGCATCTGTCAGACTGAGCAAGGCTTGTTTATTAATTTTTTATGGAGAATGTGTCAGGCAAGTATTAGTGAAGATACAGATGGCCTGTTAAAAGGCCAATTTTTTAACCATCTCAGTGCATCCTATCATTGAGAATAAATATTTTTATTTGGTTATTCATGATTACCACTCTCCTTTCAAGCGAGAATGGGTGTAGCTGCAAGCCAGTTTAACTAATGATCAATTAATGACAGACTTGAACGTTTTTCTTGCTTCTATGCTTTAAAAAACTACTTTTTTTTTGGTTACCTATTCTTTTTTTAAAAAAACTACTTTTTTTATGTTGCTCTATATTGTCTTTAAATAATTGATACTGATTGACTTTTCACTTCCAAAAATAACTACTAATGCCACTTATCAAAAAGGAAATAATTACTAACGTTTTCCAATAAGCGACTCAGATACTTGTGGCGACACCTGGGAGACTCAGAGATCATGTAGAGAATACAGCAGGATTTGCTACTCGGTTGATGGGTGTTAAAGTGTTGGTCCTTGATGAAGCCGATCATTTGTTGGATATGGGATTCCGTAAAGAAATTGAGAGAATCATCTCTGCTATTCCAAAACAGCGCCAAACACTTCTCTTTTCTGCAACAGTTCCACCGGAGGTATTTTCTTAATTATTCTCCTGGAGTAAGTAGTATAAAGAGAAGGAAATGAATTTACCTCCGACTTTGCAGGTCCGTCAAATTTGTCATATTGCTTTG-AAAAGAGACCACGAATTTATCAATACTGTTGAGGAAGGCAGTGAAGAGACACATGCACAA</genome_strand>
        <mrna_strand>AAGAAAGTGAAGAATCTGATGAAGACAATGAGGTCGAGGATGAAAAGATGGCCTCATTGGAGGAGGACAGTCCAAGGGCATCAAGCCCGAGCTCACATGGAAAAAGTGATTCCCACCTCACCGAAACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATCAGTTTCCTCTCTCTCCCTTGTCTCTGAAAGGAGTTAAAGATGCTGGATACAAAACGATGACTGTAGTGCAGGAGGCAACCCTTCCCATTATTCTAAAAG...........................................................................................................................................................................................................................................TGCCTGTTGTAATCCATTGTATTTGGTAGGCAAGGACGTTCTGGCCAAGGCAAAGACTGGCACTGGGAAAACTGTAGCATTTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTTCAATTGAAGTTGTTGTAAAATCACCCCCCAACACCCGTGATCAAAAGAGGCCACCAATTCTGGTGCTTGTGATATGCCCTACCCGGGAGCTTGCAACTCAAGCAGCTGCCGAGGCCAACACCTTGTTAAAATATCACCCTTCAATTGGGGTTCAAGTTGTTATAGGCGGAACAAGGCTTGCACTTGAGCAGAAAAGGATGCAAGCAAATCCATGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGTGGCGACACCTGGGAGACTCAGAGATCATGTAGAGAATACAGCAGGATTTGCTACTCGGTTGATGGGTGTTAAAGTGTTGGTCCTTGATGAAGCCGATCATTTGTTGGATATGGGATTCCGTAAAGAAATTGAGAGAATCATCTCTGCTATTCCAAAACAGCGCCAAACACTTCTCTTTTCTGCAACAGTTCCACCGGAG........................................................................GTCCCGCAAATTTGTCATATTGCTTTGAAAAAGAGACCACGAATTTATCAATACTGTTGAGGAAAGCAGTGAAGAGACACATGCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705499" ref_strand="+" ref_description="SGN-E705499 [FA27BC11]">
      <seq>atgggtcgaggtagttccatgctgttggatgaagatgataccgataatgaggatgacgaagaggaagaggagaatggttataaggggttccgagatttgattgacagcgaggaagaaagtgaagaatctgatgaagacaatgaggtcgaggatgaaaagatggcctcattggaggaggacagtccaagggcatcaagcccgagctcacatggaaaaagtgattcccacctcaccgaaaccaggtttgatcagtttcctctctctcccttgtctctgaaaggagttaaagatgctggatacaaaacgatgactgtagtgcaggaggcaacccttcccattattctaaaaggcaaggacgttctggccaaggcaaagactggcactgggaaaactgtagcatttttgcttccttcaattgaagttgttgtaaaatcaccccccaacacccgtgatcaaaagaggccaccaattctggtgcttgtgatatgccctacccgggagcttgcaactcaagcagctgccgaggccaacaccttgttaaaatatcacccttcaattggggttcaagttgttataggcggaacaaggcttgcacttgagcagaaaaggatgcaagcaaatccatgtcagatacttgtggcgacacctgggagactcagagatcatgtagagaatacagcaggatttgctactcggttgatgggtgttaaagtgttggtccttgatgaagccgatcatttgttggatatgggattcccgtaagaaattgagagaatcatctctgctattcccaaacagcgccaaacacttctcttttctgncacagttccaccggaggtccgtcaaatttgtcatattgctttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="68828" stop="64204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68528" g_stop="68287" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68286" i_stop="67654" i_length="633">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67653" g_stop="67547" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="349" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67546" i_stop="67283" i_length="264">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67282" g_stop="67227" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="405" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67226" i_stop="65980" i_length="1247">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.634" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65979" g_stop="65755" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="630" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65754" i_stop="64812" i_length="943">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64811" g_stop="64605" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="837" r_length="207" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64604" i_stop="64533" i_length="72">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.536" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64532" g_stop="64504" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="866" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E705499" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68528" e_stop="68287"/>
          <exon e_start="67653" e_stop="67547"/>
          <exon e_start="67282" e_stop="67227"/>
          <exon e_start="65979" e_stop="65755"/>
          <exon e_start="64811" e_stop="64605"/>
          <exon e_start="64532" e_stop="64504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGTCGAGGTAGTTCCATGCTGTTGGATGAAGATGATACCGATAATGAGGATGACGAAGAGGAAGAGGAGAATGGTTATAAGGGGTTCCGAGATTTGATTGACAGCGAGGAAGAAAGTGAAGAATCTGATGAAGACAATGAGGTCGAGGATGAAAAGATGGCCTCATTGGAGGAGGACAGTCCAAGGGCATCAAGCCCGAGCTCACATGGAAAAAGTGATTCCCACCTCACCGAAACCAGGTAATGTATAAACTCATGTCTCGCTATGTATCACACAGCATGCTAGTTAGGATCTTTTTTGAATAGCTGTCTCGTGCTCTTACAAGCATGATGCTAGAATAATGAACAAATTATAGCATTCACATATATGATCCAGAGGTTTGTGAATCTTTTGCCAGAAAGCAACGTGGATTTGGATTGTTGTTATTTGTATTTCTAAATCGCTGAGTTAGGATTTAGATATGTGATAGTTGCAGGTTGCTATTAGCGAATATGTTAAATGAACATAGAAAGAAGATAATCCAGGAAGATTTAGTGGATTAGCTATCATCAAGTACTATGGGAAGAAGAGAGACACTGTATATGCTTAATTAATGTATAGGCTAACTTAATGAAGGGGTTGAGCGTATGAATCATGCTTCATCAATTAGTTGAAAGTGGCTTTTTTGCTTGACTCTACACAATCAGAGGGATTTTGCCCAAAAATGTGGTAAATTTTCCAGTTAGATGGAATTTCTGTTGAACTTCTAATTATCAAGGCAGTTGTAGTGAAATATTGTTGTTCATGCTCTTAAGTAACCTGAAGGTAAATTAAATTCTTTTGTCAATTTATCTTTATTATATTAGATAATATTTGTTTCCATTTCCCTGCAGGTTTGATCAGTTTCCTCTCTCTCCCTTGTCTCTGAAAGGAGTTAAAGATGCTGGATACAAAACGATGACTGTAGTGCAGGAGGCAACCCTTCCCATTATTCTAAAAGGTGAGTTTTTATATTTTGCAGAAGCTAGAAGCATAGTGAGTTGAGATGTCATTCATCAGTTAGTAATAGAGGTTGATGGCTTTGTAAATAATATGTCCAGTTGTGTTACTTCAAGCAGTCTGGAAACTACATGCAGAAATATACTATGTATTAGAGTGCTATCCCAGCCTTCTTTGTTGCTAGGATTTTTATTTTTTTTGTCTTATTCATTTATTGTATGTGTTATTGATGACAGTGCCTGTTGTAATCCATTGTATTTGGTAGGCAAGGACGTTCTGGCCAAGGCAAAGACTGGCACTGGGAAAACTGTAGCATTTTTGGTAAAACACTACGTCTTTTCCATCAGAGAGTATCTTTTCATGTATGAATAAGAAAAAAATCGTCACACGCAATCACTGATATAACAAATGGATTTTATACTCGTTTATGTCACCTGTTAATTGGTATTCCATTTTCTTGCTAGTTTATAACTTTCATAGTGACTTGTATAATTGAACACCCCTATATACCAGATTTCTTGGAACAGGACTGATGTCAACACCATTATTTGAATTGAAGGATGAGTATCTTCAAGTTGTAATGTTACCAATACATGCATTCTTTTGGTTTGTTGAACGTGAATAGAAGTGAAAGCCACTATTTGCTGAAGTTCTTCAGAAAATAGAATTGCTCTATGTAAAGACAAGGGTTTGAACCCCATAGTTTTGTCCCCTTAAAACAAAAAAAAAATCTTACTGGTTTAGTTTGTTATTTTTTGGTGTTCCGTTTCCCTTGAAGTTTTTAGTTAAAGTTTTTCATTTTTTTAGTTCCGTAGAAATTAATAAAGTTAGTTGTATGCCATGAAACAACCAAGTTGTAAGCAGGTGTGATTTCACTATTAAAAATTGTTTAACCAATTTTAACAAGTTAAATTATATTTAAACATGAAATTTCTTTTGTTGCACAAAAAGGTGGTGATAGTCTGCTAATTTTGAGTCCCAACATTTCTCTGCTTTTATATGACGTGTTTCTCAATATGCTGGGTAATTATTGTTCTTTGGTACAAGTATATGCTGTTTTCGTACTTCGCTTCACACTTAAGGAAAAAGCATTATATATAACAAGAAATGGAAAAACTAGAGGGAAGCTAAAACATTTTAGTACACATAATAATTGAGGACAAAGTTCGTATCCATCTTGGGTCATGGGTTTTGCCTTTTTGATATTTTTTAACTTTAGATCTTAGGTATACTGCAGTTACACAACATTCAGTGATTATTAGATTTTCTGATAGTCAACTTGTCTCATTTGTCCACAGCTGCCTTTTACTTTTTAATTTCTTTCCTATTAAGAAACCAGAAAGCAGAGCTTCAACACCTATTTTGTGATTGAGTTATGGCTTTGAAATGGATTCTGTTAACCTAATCCTTTTTAATTAATTAAATATCAACTCAGTTAAATTAGTCATGTTAAAGATTCTCCAAATATTGATATAGATTTTTCATGGTCATTTTAAAATTTATCCGAGAAAATGACTGGCATCTCTGATATCACGTTGGCCTAAACCATTCTAGTACTTATATTTCAGCTTCCTTCAATTGAAGTTGTTGTAAAATCACCCCCCAACACCCGTGATCAAAAGAGGCCACCAATTCTGGTGCTTGTGATATGCCCTACCCGGGAGCTTGCAACTCAAGCAGCTGCCGAGGCCAACACCTTGTTAAAATATCACCCTTCAATTGGGGTTCAAGTTGTTATAGGCGGAACAAGGCTTGCACTTGAGCAGAAAAGGATGCAAGCAAATCCATGTCAGGTAATTATTTCTTTGAGACTCCATTTTAAAAATAAAATATAGTATTTCTTTGAGAAGGGCACAGAAATCATGCCAGATGTAGTAGTTATTACTTTATTTCATTATAAAGTTCCTGCTTTATGAATAATATATACATGATTCTTGTGATAAATGAAGCAACAGCTAGCTGAGAAGAAGAAATTCATTTAGATGAAACCTCTGAAACATTAGTAAAATGTTTGGCGAGCTTAAGTTTTTGACGAATCGAAAAAGGAGGTTTTATTCTGTTTAACTGTTGGATACAATAATGTAGTACAACCACCATATATCTACTACAACAATAATGATATGCTTGTGTATTTGATTTAACATTGCAGGCATGGGGTTATTATAAGGGAAAATTAGGCCCTACATGATGAATATTAGAAGTGCTTCTCTTCTTTGATTCCATTGACCTCGCAAAGCACCTTTGTTAGATCAATAGTTGCTGACCTTCTTAGCTTAGTCTTAATTCATCTTTTCTATGCATCTGTCAGACTGAGCAAGGCTTGTTTATTAATTTTTTATGGAGAATGTGTCAGGCAAGTATTAGTGAAGATACAGATGGCCTGTTAAAAGGCCAATTTTTTAACCATCTCAGTGCATCCTATCATTGAGAATAAATATTTTTATTTGGTTATTCATGATTACCACTCTCCTTTCAAGCGAGAATGGGTGTAGCTGCAAGCCAGTTTAACTAATGATCAATTAATGACAGACTTGAACGTTTTTCTTGCTTCTATGCTTTAAAAAACTACTTTTTTTTTGGTTACCTATTCTTTTTTTAAAAAAACTACTTTTTTTATGTTGCTCTATATTGTCTTTAAATAATTGATACTGATTGACTTTTCACTTCCAAAAATAACTACTAATGCCACTTATCAAAAAGGAAATAATTACTAACGTTTTCCAATAAGCGACTCAGATACTTGTGGCGACACCTGGGAGACTCAGAGATCATGTAGAGAATACAGCAGGATTTGCTACTCGGTTGATGGGTGTTAAAGTGTTGGTCCTTGATGAAGCCGATCATTTGTTGGATATGGGATTCCGTAAAGAAATTGAGAGAATCATCTCTGCTATTCCAAAACAGCGCCAAACACTTCTCTTTTCTGCAACAGTTCCACCGGAGGTATTTTCTTAATTATTCTCCTGGAGTAAGTAGTATAAAGAGAAGGAAATGAATTTACCTCCGACTTTGCAGGTCCGTCAAATTTGTCATATTGCTTTGAA</genome_strand>
        <mrna_strand>ATGGGTCGAGGTAGTTCCATGCTGTTGGATGAAGATGATACCGATAATGAGGATGACGAAGAGGAAGAGGAGAATGGTTATAAGGGGTTCCGAGATTTGATTGACAGCGAGGAAGAAAGTGAAGAATCTGATGAAGACAATGAGGTCGAGGATGAAAAGATGGCCTCATTGGAGGAGGACAGTCCAAGGGCATCAAGCCCGAGCTCACATGGAAAAAGTGATTCCCACCTCACCGAAACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATCAGTTTCCTCTCTCTCCCTTGTCTCTGAAAGGAGTTAAAGATGCTGGATACAAAACGATGACTGTAGTGCAGGAGGCAACCCTTCCCATTATTCTAAAAG........................................................................................................................................................................................................................................................................GCAAGGACGTTCTGGCCAAGGCAAAGACTGGCACTGGGAAAACTGTAGCATTTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTTCAATTGAAGTTGTTGTAAAATCACCCCCCAACACCCGTGATCAAAAGAGGCCACCAATTCTGGTGCTTGTGATATGCCCTACCCGGGAGCTTGCAACTCAAGCAGCTGCCGAGGCCAACACCTTGTTAAAATATCACCCTTCAATTGGGGTTCAAGTTGTTATAGGCGGAACAAGGCTTGCACTTGAGCAGAAAAGGATGCAAGCAAATCCATGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGTGGCGACACCTGGGAGACTCAGAGATCATGTAGAGAATACAGCAGGATTTGCTACTCGGTTGATGGGTGTTAAAGTGTTGGTCCTTGATGAAGCCGATCATTTGTTGGATATGGGATTCCCGTAAGAAATTGAGAGAATCATCTCTGCTATTCCCAAACAGCGCCAAACACTTCTCTTTTCTGNCACAGTTCCACCGGAG........................................................................GTCCGTCAAATTTGTCATATTGCTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266804" ref_strand="+" ref_description="SGN-E266804 [cLEI-7-B3]">
      <seq>aacccttcccattattctaaaaggcaaggacgttctggccaaggcaaagactggcactgggaaaactgtagcatttttgcttccttcaattgaagttgttgtaaaatcaccccccaacacccgtgatcaaaagaggccaccaattctggtgcttgtgatatgccctacccgggagcttgcaactcaagcagctgccgaggccaacaccttgttaaaatatcacccttcaattggggttcaagttgttataggcggaacaaggcttgcacttgagcagaaaaggatgcaagcaaatccatgtcagatacttgtggcgacacctgggagactcagagatcatgtagagaatacagcaggatttgctactcggttgatgggtgttaaagtgttggtccttgatgaagccgatcatttgttggatatgggattccgtaaagaaattgagagaatcatctctgctattccaaaacagcgccaaacacttctcttttctgcaacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="67869" stop="64315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67569" g_stop="67547" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67546" i_stop="67283" i_length="264">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67282" g_stop="67227" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="79" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67226" i_stop="65980" i_length="1247">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.634" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65979" g_stop="65755" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="304" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65754" i_stop="64812" i_length="943">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64811" g_stop="64615" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="501" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E266804" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67569" e_stop="67547"/>
          <exon e_start="67282" e_stop="67227"/>
          <exon e_start="65979" e_stop="65755"/>
          <exon e_start="64811" e_stop="64615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTTCCCATTATTCTAAAAGGTGAGTTTTTATATTTTGCAGAAGCTAGAAGCATAGTGAGTTGAGATGTCATTCATCAGTTAGTAATAGAGGTTGATGGCTTTGTAAATAATATGTCCAGTTGTGTTACTTCAAGCAGTCTGGAAACTACATGCAGAAATATACTATGTATTAGAGTGCTATCCCAGCCTTCTTTGTTGCTAGGATTTTTATTTTTTTTGTCTTATTCATTTATTGTATGTGTTATTGATGACAGTGCCTGTTGTAATCCATTGTATTTGGTAGGCAAGGACGTTCTGGCCAAGGCAAAGACTGGCACTGGGAAAACTGTAGCATTTTTGGTAAAACACTACGTCTTTTCCATCAGAGAGTATCTTTTCATGTATGAATAAGAAAAAAATCGTCACACGCAATCACTGATATAACAAATGGATTTTATACTCGTTTATGTCACCTGTTAATTGGTATTCCATTTTCTTGCTAGTTTATAACTTTCATAGTGACTTGTATAATTGAACACCCCTATATACCAGATTTCTTGGAACAGGACTGATGTCAACACCATTATTTGAATTGAAGGATGAGTATCTTCAAGTTGTAATGTTACCAATACATGCATTCTTTTGGTTTGTTGAACGTGAATAGAAGTGAAAGCCACTATTTGCTGAAGTTCTTCAGAAAATAGAATTGCTCTATGTAAAGACAAGGGTTTGAACCCCATAGTTTTGTCCCCTTAAAACAAAAAAAAAATCTTACTGGTTTAGTTTGTTATTTTTTGGTGTTCCGTTTCCCTTGAAGTTTTTAGTTAAAGTTTTTCATTTTTTTAGTTCCGTAGAAATTAATAAAGTTAGTTGTATGCCATGAAACAACCAAGTTGTAAGCAGGTGTGATTTCACTATTAAAAATTGTTTAACCAATTTTAACAAGTTAAATTATATTTAAACATGAAATTTCTTTTGTTGCACAAAAAGGTGGTGATAGTCTGCTAATTTTGAGTCCCAACATTTCTCTGCTTTTATATGACGTGTTTCTCAATATGCTGGGTAATTATTGTTCTTTGGTACAAGTATATGCTGTTTTCGTACTTCGCTTCACACTTAAGGAAAAAGCATTATATATAACAAGAAATGGAAAAACTAGAGGGAAGCTAAAACATTTTAGTACACATAATAATTGAGGACAAAGTTCGTATCCATCTTGGGTCATGGGTTTTGCCTTTTTGATATTTTTTAACTTTAGATCTTAGGTATACTGCAGTTACACAACATTCAGTGATTATTAGATTTTCTGATAGTCAACTTGTCTCATTTGTCCACAGCTGCCTTTTACTTTTTAATTTCTTTCCTATTAAGAAACCAGAAAGCAGAGCTTCAACACCTATTTTGTGATTGAGTTATGGCTTTGAAATGGATTCTGTTAACCTAATCCTTTTTAATTAATTAAATATCAACTCAGTTAAATTAGTCATGTTAAAGATTCTCCAAATATTGATATAGATTTTTCATGGTCATTTTAAAATTTATCCGAGAAAATGACTGGCATCTCTGATATCACGTTGGCCTAAACCATTCTAGTACTTATATTTCAGCTTCCTTCAATTGAAGTTGTTGTAAAATCACCCCCCAACACCCGTGATCAAAAGAGGCCACCAATTCTGGTGCTTGTGATATGCCCTACCCGGGAGCTTGCAACTCAAGCAGCTGCCGAGGCCAACACCTTGTTAAAATATCACCCTTCAATTGGGGTTCAAGTTGTTATAGGCGGAACAAGGCTTGCACTTGAGCAGAAAAGGATGCAAGCAAATCCATGTCAGGTAATTATTTCTTTGAGACTCCATTTTAAAAATAAAATATAGTATTTCTTTGAGAAGGGCACAGAAATCATGCCAGATGTAGTAGTTATTACTTTATTTCATTATAAAGTTCCTGCTTTATGAATAATATATACATGATTCTTGTGATAAATGAAGCAACAGCTAGCTGAGAAGAAGAAATTCATTTAGATGAAACCTCTGAAACATTAGTAAAATGTTTGGCGAGCTTAAGTTTTTGACGAATCGAAAAAGGAGGTTTTATTCTGTTTAACTGTTGGATACAATAATGTAGTACAACCACCATATATCTACTACAACAATAATGATATGCTTGTGTATTTGATTTAACATTGCAGGCATGGGGTTATTATAAGGGAAAATTAGGCCCTACATGATGAATATTAGAAGTGCTTCTCTTCTTTGATTCCATTGACCTCGCAAAGCACCTTTGTTAGATCAATAGTTGCTGACCTTCTTAGCTTAGTCTTAATTCATCTTTTCTATGCATCTGTCAGACTGAGCAAGGCTTGTTTATTAATTTTTTATGGAGAATGTGTCAGGCAAGTATTAGTGAAGATACAGATGGCCTGTTAAAAGGCCAATTTTTTAACCATCTCAGTGCATCCTATCATTGAGAATAAATATTTTTATTTGGTTATTCATGATTACCACTCTCCTTTCAAGCGAGAATGGGTGTAGCTGCAAGCCAGTTTAACTAATGATCAATTAATGACAGACTTGAACGTTTTTCTTGCTTCTATGCTTTAAAAAACTACTTTTTTTTTGGTTACCTATTCTTTTTTTAAAAAAACTACTTTTTTTATGTTGCTCTATATTGTCTTTAAATAATTGATACTGATTGACTTTTCACTTCCAAAAATAACTACTAATGCCACTTATCAAAAAGGAAATAATTACTAACGTTTTCCAATAAGCGACTCAGATACTTGTGGCGACACCTGGGAGACTCAGAGATCATGTAGAGAATACAGCAGGATTTGCTACTCGGTTGATGGGTGTTAAAGTGTTGGTCCTTGATGAAGCCGATCATTTGTTGGATATGGGATTCCGTAAAGAAATTGAGAGAATCATCTCTGCTATTCCAAAACAGCGCCAAACACTTCTCTTTTCTGCAACAGT</genome_strand>
        <mrna_strand>AACCCTTCCCATTATTCTAAAAG........................................................................................................................................................................................................................................................................GCAAGGACGTTCTGGCCAAGGCAAAGACTGGCACTGGGAAAACTGTAGCATTTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTTCAATTGAAGTTGTTGTAAAATCACCCCCCAACACCCGTGATCAAAAGAGGCCACCAATTCTGGTGCTTGTGATATGCCCTACCCGGGAGCTTGCAACTCAAGCAGCTGCCGAGGCCAACACCTTGTTAAAATATCACCCTTCAATTGGGGTTCAAGTTGTTATAGGCGGAACAAGGCTTGCACTTGAGCAGAAAAGGATGCAAGCAAATCCATGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGTGGCGACACCTGGGAGACTCAGAGATCATGTAGAGAATACAGCAGGATTTGCTACTCGGTTGATGGGTGTTAAAGTGTTGGTCCTTGATGAAGCCGATCATTTGTTGGATATGGGATTCCGTAAAGAAATTGAGAGAATCATCTCTGCTATTCCAAAACAGCGCCAAACACTTCTCTTTTCTGCAACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326498" ref_strand="+" ref_description="SGN-E326498 [cTOC-17-I9]">
      <seq>agaaagtgaagaatctgatgaagacaatgaggtcgaggatgaaaagatggcctcattggaggaggacagtccaagggcatcaagcccgagctcacatggaaaaagtgattcccacctcaccgaaaccaggtttgatcagtttcctctctctcccttgtctctgaaaggagttaaagatgctggatacaaaacgatgactgtagtgcaggaggcaacccttcccattattctaaaagtgcctgttgtaatccattgtatttggtaggcaaggacgttctggccaaggcaaagactggcactgggaaaactgtagcatttttgcttccttcaattgaagttgttgtaaaatcaccccccaacacccgtgatcaaaagaggccaccaattctggtgcttgtgatatgccctacccgggagcttgcaactcaagcagctgccgaggccaacaccttgttaaaatatcacccttcaattggggttcaagttgttataggcggaacaaggcttgcacttgagcagaaaaggatgcaagcaaatccatgtcagatacttgtggcgacacctgngagactcagagatcatgtagagaatacagcaggatttgctactcggttgatgggtgttaaagtgttggtccttgatgaagccgatcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="68715" stop="64402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68415" g_stop="68287" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68286" i_stop="67654" i_length="633">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67653" g_stop="67547" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="236" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67546" i_stop="67312" i_length="235">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67311" g_stop="67227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="321" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67226" i_stop="65980" i_length="1247">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.634" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65979" g_stop="65755" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="546" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65754" i_stop="64812" i_length="943">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64811" g_stop="64702" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="656" r_length="110" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E326498" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68415" e_stop="68287"/>
          <exon e_start="67653" e_stop="67547"/>
          <exon e_start="67311" e_stop="67227"/>
          <exon e_start="65979" e_stop="65755"/>
          <exon e_start="64811" e_stop="64702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGTGAAGAATCTGATGAAGACAATGAGGTCGAGGATGAAAAGATGGCCTCATTGGAGGAGGACAGTCCAAGGGCATCAAGCCCGAGCTCACATGGAAAAAGTGATTCCCACCTCACCGAAACCAGGTAATGTATAAACTCATGTCTCGCTATGTATCACACAGCATGCTAGTTAGGATCTTTTTTGAATAGCTGTCTCGTGCTCTTACAAGCATGATGCTAGAATAATGAACAAATTATAGCATTCACATATATGATCCAGAGGTTTGTGAATCTTTTGCCAGAAAGCAACGTGGATTTGGATTGTTGTTATTTGTATTTCTAAATCGCTGAGTTAGGATTTAGATATGTGATAGTTGCAGGTTGCTATTAGCGAATATGTTAAATGAACATAGAAAGAAGATAATCCAGGAAGATTTAGTGGATTAGCTATCATCAAGTACTATGGGAAGAAGAGAGACACTGTATATGCTTAATTAATGTATAGGCTAACTTAATGAAGGGGTTGAGCGTATGAATCATGCTTCATCAATTAGTTGAAAGTGGCTTTTTTGCTTGACTCTACACAATCAGAGGGATTTTGCCCAAAAATGTGGTAAATTTTCCAGTTAGATGGAATTTCTGTTGAACTTCTAATTATCAAGGCAGTTGTAGTGAAATATTGTTGTTCATGCTCTTAAGTAACCTGAAGGTAAATTAAATTCTTTTGTCAATTTATCTTTATTATATTAGATAATATTTGTTTCCATTTCCCTGCAGGTTTGATCAGTTTCCTCTCTCTCCCTTGTCTCTGAAAGGAGTTAAAGATGCTGGATACAAAACGATGACTGTAGTGCAGGAGGCAACCCTTCCCATTATTCTAAAAGGTGAGTTTTTATATTTTGCAGAAGCTAGAAGCATAGTGAGTTGAGATGTCATTCATCAGTTAGTAATAGAGGTTGATGGCTTTGTAAATAATATGTCCAGTTGTGTTACTTCAAGCAGTCTGGAAACTACATGCAGAAATATACTATGTATTAGAGTGCTATCCCAGCCTTCTTTGTTGCTAGGATTTTTATTTTTTTTGTCTTATTCATTTATTGTATGTGTTATTGATGACAGTGCCTGTTGTAATCCATTGTATTTGGTAGGCAAGGACGTTCTGGCCAAGGCAAAGACTGGCACTGGGAAAACTGTAGCATTTTTGGTAAAACACTACGTCTTTTCCATCAGAGAGTATCTTTTCATGTATGAATAAGAAAAAAATCGTCACACGCAATCACTGATATAACAAATGGATTTTATACTCGTTTATGTCACCTGTTAATTGGTATTCCATTTTCTTGCTAGTTTATAACTTTCATAGTGACTTGTATAATTGAACACCCCTATATACCAGATTTCTTGGAACAGGACTGATGTCAACACCATTATTTGAATTGAAGGATGAGTATCTTCAAGTTGTAATGTTACCAATACATGCATTCTTTTGGTTTGTTGAACGTGAATAGAAGTGAAAGCCACTATTTGCTGAAGTTCTTCAGAAAATAGAATTGCTCTATGTAAAGACAAGGGTTTGAACCCCATAGTTTTGTCCCCTTAAAACAAAAAAAAAATCTTACTGGTTTAGTTTGTTATTTTTTGGTGTTCCGTTTCCCTTGAAGTTTTTAGTTAAAGTTTTTCATTTTTTTAGTTCCGTAGAAATTAATAAAGTTAGTTGTATGCCATGAAACAACCAAGTTGTAAGCAGGTGTGATTTCACTATTAAAAATTGTTTAACCAATTTTAACAAGTTAAATTATATTTAAACATGAAATTTCTTTTGTTGCACAAAAAGGTGGTGATAGTCTGCTAATTTTGAGTCCCAACATTTCTCTGCTTTTATATGACGTGTTTCTCAATATGCTGGGTAATTATTGTTCTTTGGTACAAGTATATGCTGTTTTCGTACTTCGCTTCACACTTAAGGAAAAAGCATTATATATAACAAGAAATGGAAAAACTAGAGGGAAGCTAAAACATTTTAGTACACATAATAATTGAGGACAAAGTTCGTATCCATCTTGGGTCATGGGTTTTGCCTTTTTGATATTTTTTAACTTTAGATCTTAGGTATACTGCAGTTACACAACATTCAGTGATTATTAGATTTTCTGATAGTCAACTTGTCTCATTTGTCCACAGCTGCCTTTTACTTTTTAATTTCTTTCCTATTAAGAAACCAGAAAGCAGAGCTTCAACACCTATTTTGTGATTGAGTTATGGCTTTGAAATGGATTCTGTTAACCTAATCCTTTTTAATTAATTAAATATCAACTCAGTTAAATTAGTCATGTTAAAGATTCTCCAAATATTGATATAGATTTTTCATGGTCATTTTAAAATTTATCCGAGAAAATGACTGGCATCTCTGATATCACGTTGGCCTAAACCATTCTAGTACTTATATTTCAGCTTCCTTCAATTGAAGTTGTTGTAAAATCACCCCCCAACACCCGTGATCAAAAGAGGCCACCAATTCTGGTGCTTGTGATATGCCCTACCCGGGAGCTTGCAACTCAAGCAGCTGCCGAGGCCAACACCTTGTTAAAATATCACCCTTCAATTGGGGTTCAAGTTGTTATAGGCGGAACAAGGCTTGCACTTGAGCAGAAAAGGATGCAAGCAAATCCATGTCAGGTAATTATTTCTTTGAGACTCCATTTTAAAAATAAAATATAGTATTTCTTTGAGAAGGGCACAGAAATCATGCCAGATGTAGTAGTTATTACTTTATTTCATTATAAAGTTCCTGCTTTATGAATAATATATACATGATTCTTGTGATAAATGAAGCAACAGCTAGCTGAGAAGAAGAAATTCATTTAGATGAAACCTCTGAAACATTAGTAAAATGTTTGGCGAGCTTAAGTTTTTGACGAATCGAAAAAGGAGGTTTTATTCTGTTTAACTGTTGGATACAATAATGTAGTACAACCACCATATATCTACTACAACAATAATGATATGCTTGTGTATTTGATTTAACATTGCAGGCATGGGGTTATTATAAGGGAAAATTAGGCCCTACATGATGAATATTAGAAGTGCTTCTCTTCTTTGATTCCATTGACCTCGCAAAGCACCTTTGTTAGATCAATAGTTGCTGACCTTCTTAGCTTAGTCTTAATTCATCTTTTCTATGCATCTGTCAGACTGAGCAAGGCTTGTTTATTAATTTTTTATGGAGAATGTGTCAGGCAAGTATTAGTGAAGATACAGATGGCCTGTTAAAAGGCCAATTTTTTAACCATCTCAGTGCATCCTATCATTGAGAATAAATATTTTTATTTGGTTATTCATGATTACCACTCTCCTTTCAAGCGAGAATGGGTGTAGCTGCAAGCCAGTTTAACTAATGATCAATTAATGACAGACTTGAACGTTTTTCTTGCTTCTATGCTTTAAAAAACTACTTTTTTTTTGGTTACCTATTCTTTTTTTAAAAAAACTACTTTTTTTATGTTGCTCTATATTGTCTTTAAATAATTGATACTGATTGACTTTTCACTTCCAAAAATAACTACTAATGCCACTTATCAAAAAGGAAATAATTACTAACGTTTTCCAATAAGCGACTCAGATACTTGTGGCGACACCTGGGAGACTCAGAGATCATGTAGAGAATACAGCAGGATTTGCTACTCGGTTGATGGGTGTTAAAGTGTTGGTCCTTGATGAAGCCGATCATTT</genome_strand>
        <mrna_strand>AGAAAGTGAAGAATCTGATGAAGACAATGAGGTCGAGGATGAAAAGATGGCCTCATTGGAGGAGGACAGTCCAAGGGCATCAAGCCCGAGCTCACATGGAAAAAGTGATTCCCACCTCACCGAAACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATCAGTTTCCTCTCTCTCCCTTGTCTCTGAAAGGAGTTAAAGATGCTGGATACAAAACGATGACTGTAGTGCAGGAGGCAACCCTTCCCATTATTCTAAAAG...........................................................................................................................................................................................................................................TGCCTGTTGTAATCCATTGTATTTGGTAGGCAAGGACGTTCTGGCCAAGGCAAAGACTGGCACTGGGAAAACTGTAGCATTTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTTCAATTGAAGTTGTTGTAAAATCACCCCCCAACACCCGTGATCAAAAGAGGCCACCAATTCTGGTGCTTGTGATATGCCCTACCCGGGAGCTTGCAACTCAAGCAGCTGCCGAGGCCAACACCTTGTTAAAATATCACCCTTCAATTGGGGTTCAAGTTGTTATAGGCGGAACAAGGCTTGCACTTGAGCAGAAAAGGATGCAAGCAAATCCATGTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGTGGCGACACCTGNGAGACTCAGAGATCATGTAGAGAATACAGCAGGATTTGCTACTCGGTTGATGGGTGTTAAAGTGTTGGTCCTTGATGAAGCCGATCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561193" ref_strand="+" ref_description="SGN-E561193 [17147]">
      <seq>tggtagtggatatggtagagatatggcagcacaaggtggtagtggtaggttagggaggaaagaaggggcaggtatgggtcgagggagttccatgctgttggatgaagatgataccaataatgaggatgaggatgaggaagaggaagaggagaatggttataaggggttccaagatttgattgacagtgaggaagaaagtgaagaatctgatgaagacaatgaggttgaggatgaaaaaatggtctctttggaaaaggaggacagtccaagggacatcaagtccgagctcacatggaaaaagtgattcccacctcacggaaaccaggtttgatcagtttcctctctctcccttgtctctgaaaggagttaaagatgctggatacaaaacgatgaccgtagtgcaggaggcaacccttcccgttattctgaaagtgcctgttgtaatccattgtatttggtaggcaaggacgttctgggcaaggcaaagactggcactgggaaaactgtacattttttgcttccttcaattgaagttgttgtaaaaatcacccccccaacacccgtgatcaaaagaggcacagttctggtgcttgtgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="68901" stop="65597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68601" g_stop="68287" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68286" i_stop="67654" i_length="633">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67653" g_stop="67547" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="432" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67546" i_stop="67312" i_length="235">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67311" g_stop="67227" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="517" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67226" i_stop="65980" i_length="1247">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="0.634" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65979" g_stop="65897" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="600" r_length="83" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E561193" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68601" e_stop="68287"/>
          <exon e_start="67653" e_stop="67547"/>
          <exon e_start="67311" e_stop="67227"/>
          <exon e_start="65979" e_stop="65897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAGTGGATATGGTAGAGATATGGCAGCACAAGGTGGTAATGGTAGGTTAGGGAGGAAAGAAGGGGCAGGTATGGGTCGAGGTAGTTCCATGCTGTTGGATGAAGATGATACCGATAATGA-G--GA---TGACGAAGAGGAAGAGGAGAATGGTTATAAGGGGTTCCGAGATTTGATTGACAGCGAGGAAGAAAGTGAAGAATCTGATGAAGACAATGAGGTCGAGGATGAAAAGATGGCCTCATTGG---AGGAGGACAGTCCAAGGG-CATCAAGCCCGAGCTCACATGGAAAAAGTGATTCCCACCTCACCGAAACCAGGTAATGTATAAACTCATGTCTCGCTATGTATCACACAGCATGCTAGTTAGGATCTTTTTTGAATAGCTGTCTCGTGCTCTTACAAGCATGATGCTAGAATAATGAACAAATTATAGCATTCACATATATGATCCAGAGGTTTGTGAATCTTTTGCCAGAAAGCAACGTGGATTTGGATTGTTGTTATTTGTATTTCTAAATCGCTGAGTTAGGATTTAGATATGTGATAGTTGCAGGTTGCTATTAGCGAATATGTTAAATGAACATAGAAAGAAGATAATCCAGGAAGATTTAGTGGATTAGCTATCATCAAGTACTATGGGAAGAAGAGAGACACTGTATATGCTTAATTAATGTATAGGCTAACTTAATGAAGGGGTTGAGCGTATGAATCATGCTTCATCAATTAGTTGAAAGTGGCTTTTTTGCTTGACTCTACACAATCAGAGGGATTTTGCCCAAAAATGTGGTAAATTTTCCAGTTAGATGGAATTTCTGTTGAACTTCTAATTATCAAGGCAGTTGTAGTGAAATATTGTTGTTCATGCTCTTAAGTAACCTGAAGGTAAATTAAATTCTTTTGTCAATTTATCTTTATTATATTAGATAATATTTGTTTCCATTTCCCTGCAGGTTTGATCAGTTTCCTCTCTCTCCCTTGTCTCTGAAAGGAGTTAAAGATGCTGGATACAAAACGATGACTGTAGTGCAGGAGGCAACCCTTCCCATTATTCTAAAAGGTGAGTTTTTATATTTTGCAGAAGCTAGAAGCATAGTGAGTTGAGATGTCATTCATCAGTTAGTAATAGAGGTTGATGGCTTTGTAAATAATATGTCCAGTTGTGTTACTTCAAGCAGTCTGGAAACTACATGCAGAAATATACTATGTATTAGAGTGCTATCCCAGCCTTCTTTGTTGCTAGGATTTTTATTTTTTTTGTCTTATTCATTTATTGTATGTGTTATTGATGACAGTGCCTGTTGTAATCCATTGTATTTGGTAGGCAAGGACGTTCTGGCCAAGGCAAAGACTGGCACTGGGAAAACTGTAGCATTTTTGGTAAAACACTACGTCTTTTCCATCAGAGAGTATCTTTTCATGTATGAATAAGAAAAAAATCGTCACACGCAATCACTGATATAACAAATGGATTTTATACTCGTTTATGTCACCTGTTAATTGGTATTCCATTTTCTTGCTAGTTTATAACTTTCATAGTGACTTGTATAATTGAACACCCCTATATACCAGATTTCTTGGAACAGGACTGATGTCAACACCATTATTTGAATTGAAGGATGAGTATCTTCAAGTTGTAATGTTACCAATACATGCATTCTTTTGGTTTGTTGAACGTGAATAGAAGTGAAAGCCACTATTTGCTGAAGTTCTTCAGAAAATAGAATTGCTCTATGTAAAGACAAGGGTTTGAACCCCATAGTTTTGTCCCCTTAAAACAAAAAAAAAATCTTACTGGTTTAGTTTGTTATTTTTTGGTGTTCCGTTTCCCTTGAAGTTTTTAGTTAAAGTTTTTCATTTTTTTAGTTCCGTAGAAATTAATAAAGTTAGTTGTATGCCATGAAACAACCAAGTTGTAAGCAGGTGTGATTTCACTATTAAAAATTGTTTAACCAATTTTAACAAGTTAAATTATATTTAAACATGAAATTTCTTTTGTTGCACAAAAAGGTGGTGATAGTCTGCTAATTTTGAGTCCCAACATTTCTCTGCTTTTATATGACGTGTTTCTCAATATGCTGGGTAATTATTGTTCTTTGGTACAAGTATATGCTGTTTTCGTACTTCGCTTCACACTTAAGGAAAAAGCATTATATATAACAAGAAATGGAAAAACTAGAGGGAAGCTAAAACATTTTAGTACACATAATAATTGAGGACAAAGTTCGTATCCATCTTGGGTCATGGGTTTTGCCTTTTTGATATTTTTTAACTTTAGATCTTAGGTATACTGCAGTTACACAACATTCAGTGATTATTAGATTTTCTGATAGTCAACTTGTCTCATTTGTCCACAGCTGCCTTTTACTTTTTAATTTCTTTCCTATTAAGAAACCAGAAAGCAGAGCTTCAACACCTATTTTGTGATTGAGTTATGGCTTTGAAATGGATTCTGTTAACCTAATCCTTTTTAATTAATTAAATATCAACTCAGTTAAATTAGTCATGTTAAAGATTCTCCAAATATTGATATAGATTTTTCATGGTCATTTTAAAATTTATCCGAGAAAATGACTGGCATCTCTGATATCACGTTGGCCTAAACCATTCTAGTACTTATATTTCAGCTTCCTTCAATTGAAGTTGTTGT-AAAATCA-CCCCCCAACACCCGTGATCAAAAGAGGCCACCAATTCTGGTGCTTGTGATATG</genome_strand>
        <mrna_strand>TGGTAGTGGATATGGTAGAGATATGGCAGCACAAGGTGGTAGTGGTAGGTTAGGGAGGAAAGAAGGGGCAGGTATGGGTCGAGGGAGTTCCATGCTGTTGGATGAAGATGATACCAATAATGAGGATGAGGATGAGGAAGAGGAAGAGGAGAATGGTTATAAGGGGTTCCAAGATTTGATTGACAGTGAGGAAGAAAGTGAAGAATCTGATGAAGACAATGAGGTTGAGGATGAAAAAATGGTCTCTTTGGAAAAGGAGGACAGTCCAAGGGACATCAAGTCCGAGCTCACATGGAAAAAGTGATTCCCACCTCACGGAAACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATCAGTTTCCTCTCTCTCCCTTGTCTCTGAAAGGAGTTAAAGATGCTGGATACAAAACGATGACCGTAGTGCAGGAGGCAACCCTTCCCGTTATTCTGAAAG...........................................................................................................................................................................................................................................TGCCTGTTGTAATCCATTGTATTTGGTAGGCAAGGACGTTCTGGGCAAGGCAAAGACTGGCACTGGGAAAACTGTACATTTTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTTCAATTGAAGTTGTTGTAAAAATCACCCCCCCAACACCCGTGATCAAAAGAGG-CA-CAGTTCTGGTGCTTGTGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365793" ref_strand="+" ref_description="SGN-E365793 [cLPT-8-K13]">
      <seq>gaattcggcacgaggcgataatgaggatgatgaagaggaagaggagaatggttataaggggttccgagatttgattgacagcgaggaagaaagtgaagaatctgatgaagacgatgaggttgaggatgaaaagatggtctcattggaggaggacagtccacgggcatcaagcccgagctcacatggaaaaagtgattcccacctcactgaaaccaggtttgatcagtttcctctctctcccttgtctctgaaaggagttaaagatgctggatacaaaacgatgaccgtagtgcaggaggcaacccttcccattattctaaaaggcaaggacgttctggccaaggcaaagactggcactgggaaaactgtagcatttttgcttccttcaattgaagttgttgtaaaatcaccccccaacacccgtgatcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="68787" stop="65626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68487" g_stop="68287" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="216" r_length="201" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68286" i_stop="67654" i_length="633">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67653" g_stop="67547" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="323" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67546" i_stop="67283" i_length="264">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67282" g_stop="67227" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="379" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67226" i_stop="65980" i_length="1247">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.634" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65979" g_stop="65926" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="433" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E365793" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68487" e_stop="68287"/>
          <exon e_start="67653" e_stop="67547"/>
          <exon e_start="67282" e_stop="67227"/>
          <exon e_start="65979" e_stop="65926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATAATGAGGATGACGAAGAGGAAGAGGAGAATGGTTATAAGGGGTTCCGAGATTTGATTGACAGCGAGGAAGAAAGTGAAGAATCTGATGAAGACAATGAGGTCGAGGATGAAAAGATGGCCTCATTGGAGGAGGACAGTCCAAGGGCATCAAGCCCGAGCTCACATGGAAAAAGTGATTCCCACCTCACCGAAACCAGGTAATGTATAAACTCATGTCTCGCTATGTATCACACAGCATGCTAGTTAGGATCTTTTTTGAATAGCTGTCTCGTGCTCTTACAAGCATGATGCTAGAATAATGAACAAATTATAGCATTCACATATATGATCCAGAGGTTTGTGAATCTTTTGCCAGAAAGCAACGTGGATTTGGATTGTTGTTATTTGTATTTCTAAATCGCTGAGTTAGGATTTAGATATGTGATAGTTGCAGGTTGCTATTAGCGAATATGTTAAATGAACATAGAAAGAAGATAATCCAGGAAGATTTAGTGGATTAGCTATCATCAAGTACTATGGGAAGAAGAGAGACACTGTATATGCTTAATTAATGTATAGGCTAACTTAATGAAGGGGTTGAGCGTATGAATCATGCTTCATCAATTAGTTGAAAGTGGCTTTTTTGCTTGACTCTACACAATCAGAGGGATTTTGCCCAAAAATGTGGTAAATTTTCCAGTTAGATGGAATTTCTGTTGAACTTCTAATTATCAAGGCAGTTGTAGTGAAATATTGTTGTTCATGCTCTTAAGTAACCTGAAGGTAAATTAAATTCTTTTGTCAATTTATCTTTATTATATTAGATAATATTTGTTTCCATTTCCCTGCAGGTTTGATCAGTTTCCTCTCTCTCCCTTGTCTCTGAAAGGAGTTAAAGATGCTGGATACAAAACGATGACTGTAGTGCAGGAGGCAACCCTTCCCATTATTCTAAAAGGTGAGTTTTTATATTTTGCAGAAGCTAGAAGCATAGTGAGTTGAGATGTCATTCATCAGTTAGTAATAGAGGTTGATGGCTTTGTAAATAATATGTCCAGTTGTGTTACTTCAAGCAGTCTGGAAACTACATGCAGAAATATACTATGTATTAGAGTGCTATCCCAGCCTTCTTTGTTGCTAGGATTTTTATTTTTTTTGTCTTATTCATTTATTGTATGTGTTATTGATGACAGTGCCTGTTGTAATCCATTGTATTTGGTAGGCAAGGACGTTCTGGCCAAGGCAAAGACTGGCACTGGGAAAACTGTAGCATTTTTGGTAAAACACTACGTCTTTTCCATCAGAGAGTATCTTTTCATGTATGAATAAGAAAAAAATCGTCACACGCAATCACTGATATAACAAATGGATTTTATACTCGTTTATGTCACCTGTTAATTGGTATTCCATTTTCTTGCTAGTTTATAACTTTCATAGTGACTTGTATAATTGAACACCCCTATATACCAGATTTCTTGGAACAGGACTGATGTCAACACCATTATTTGAATTGAAGGATGAGTATCTTCAAGTTGTAATGTTACCAATACATGCATTCTTTTGGTTTGTTGAACGTGAATAGAAGTGAAAGCCACTATTTGCTGAAGTTCTTCAGAAAATAGAATTGCTCTATGTAAAGACAAGGGTTTGAACCCCATAGTTTTGTCCCCTTAAAACAAAAAAAAAATCTTACTGGTTTAGTTTGTTATTTTTTGGTGTTCCGTTTCCCTTGAAGTTTTTAGTTAAAGTTTTTCATTTTTTTAGTTCCGTAGAAATTAATAAAGTTAGTTGTATGCCATGAAACAACCAAGTTGTAAGCAGGTGTGATTTCACTATTAAAAATTGTTTAACCAATTTTAACAAGTTAAATTATATTTAAACATGAAATTTCTTTTGTTGCACAAAAAGGTGGTGATAGTCTGCTAATTTTGAGTCCCAACATTTCTCTGCTTTTATATGACGTGTTTCTCAATATGCTGGGTAATTATTGTTCTTTGGTACAAGTATATGCTGTTTTCGTACTTCGCTTCACACTTAAGGAAAAAGCATTATATATAACAAGAAATGGAAAAACTAGAGGGAAGCTAAAACATTTTAGTACACATAATAATTGAGGACAAAGTTCGTATCCATCTTGGGTCATGGGTTTTGCCTTTTTGATATTTTTTAACTTTAGATCTTAGGTATACTGCAGTTACACAACATTCAGTGATTATTAGATTTTCTGATAGTCAACTTGTCTCATTTGTCCACAGCTGCCTTTTACTTTTTAATTTCTTTCCTATTAAGAAACCAGAAAGCAGAGCTTCAACACCTATTTTGTGATTGAGTTATGGCTTTGAAATGGATTCTGTTAACCTAATCCTTTTTAATTAATTAAATATCAACTCAGTTAAATTAGTCATGTTAAAGATTCTCCAAATATTGATATAGATTTTTCATGGTCATTTTAAAATTTATCCGAGAAAATGACTGGCATCTCTGATATCACGTTGGCCTAAACCATTCTAGTACTTATATTTCAGCTTCCTTCAATTGAAGTTGTTGTAAAATCACCCCCCAACACCCGTGATCAAAAG</genome_strand>
        <mrna_strand>CGATAATGAGGATGATGAAGAGGAAGAGGAGAATGGTTATAAGGGGTTCCGAGATTTGATTGACAGCGAGGAAGAAAGTGAAGAATCTGATGAAGACGATGAGGTTGAGGATGAAAAGATGGTCTCATTGGAGGAGGACAGTCCACGGGCATCAAGCCCGAGCTCACATGGAAAAAGTGATTCCCACCTCACTGAAACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATCAGTTTCCTCTCTCTCCCTTGTCTCTGAAAGGAGTTAAAGATGCTGGATACAAAACGATGACCGTAGTGCAGGAGGCAACCCTTCCCATTATTCTAAAAG........................................................................................................................................................................................................................................................................GCAAGGACGTTCTGGCCAAGGCAAAGACTGGCACTGGGAAAACTGTAGCATTTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTTCAATTGAAGTTGTTGTAAAATCACCCCCCAACACCCGTGATCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417282" ref_strand="+" ref_description="SGN-E417282 [STM-25-K13]">
      <seq>gtggaatgcagtcgaattcaagaaatggagggaggtttggaaatgaaagggggagtagaaatgagggtggaagaggtgatggtggtcgagatcgaatggggtcctcctcaaggggaggaaggtttggaagtgatataaggagtggaagtgagggtagaagaagtggaggccaagaccgtatggagtcattttcgaagggaggaaggtttgggagtgatatggggagagaaagtgaaggtagaagaagtggaggccaggatcggatggagtcatttccaaggaagggagggaggtttggaagtgaaatggcaagttccagtgacaataggggtaaaagcagggttggtagtggatatggtagagatatggcagcacaaggtggtagtggtaggttagggaggaaagaaggggcaggtatgggtcgagggagttccatgctgttggatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="69244" stop="68195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68944" g_stop="68495" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E417282" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68944" e_stop="68495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAATGCAGTCGAATTCAAGAAACGAAGGGAGGTTTGGAAATGACAGGGGGAGTAGATATGAGGGTGGAAGAGGTGATGGTGGTCGAGATCGAAAGGAGTCCTCCTCAAGGGGAGGAAGATTTGGAAGTGATGTAAGGAGTGGAAGTGAGGGTAGAAGAAGTGGAGGCCGAGATCGTATGGAGTCATTTTCGAAGGGAGGAAGGTTTGGAAGTGATAATGGGAGAGAAAGTGAAGGTAGAAGAAGTGGAGGCCAGGATCGGACAGAGTCGCTTCCAAGGAAGGGAGGGAGGTTTGGAAGTGAAATGGCAAGTTCGAGTGACAATAGGGGTAAAAGCAGGATTGGTAGTGGATATGGTAGAGATATGGCAGCACAAGGTGGTAATGGTAGGTTAGGGAGGAAAGAAGGGGCAGGTATGGGTCGAGGTAGTTCCATGCTGTTGGATGAAG</genome_strand>
        <mrna_strand>GTGGAATGCAGTCGAATTCAAGAAATGGAGGGAGGTTTGGAAATGAAAGGGGGAGTAGAAATGAGGGTGGAAGAGGTGATGGTGGTCGAGATCGAATGGGGTCCTCCTCAAGGGGAGGAAGGTTTGGAAGTGATATAAGGAGTGGAAGTGAGGGTAGAAGAAGTGGAGGCCAAGACCGTATGGAGTCATTTTCGAAGGGAGGAAGGTTTGGGAGTGATATGGGGAGAGAAAGTGAAGGTAGAAGAAGTGGAGGCCAGGATCGGATGGAGTCATTTCCAAGGAAGGGAGGGAGGTTTGGAAGTGAAATGGCAAGTTCCAGTGACAATAGGGGTAAAAGCAGGGTTGGTAGTGGATATGGTAGAGATATGGCAGCACAAGGTGGTAGTGGTAGGTTAGGGAGGAAAGAAGGGGCAGGTATGGGTCGAGGGAGTTCCATGCTGTTGGATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445860" ref_strand="+" ref_description="SGN-E445860 [cSTA-19-G5]">
      <seq>gtggaatgcagtcgaattcaagaaatggagggaggtttggaaatgaaagggggagtagaaatgagggtggaagaggtgatggtggtcgagatcgaatggggtcctcctcaaggggaggaaggtttggaagtgatataaggagtggaagtgagggtagaagaagtggaggccaagaccgtatggagtcattttcgaagggaggaaggtttgggagtgatatggggagagaaagtgaaggtagaagaagtggaggccaggatcggatggagtcatttccaaggaagggagggaggtttggaagtgaaatggcaagttccagtgacaataggggtaaaagcagggttggtagtggatatggtagagatatggcagcacaaggtggtagtggtaggttagggaggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="69244" stop="68240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68944" g_stop="68540" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E445860" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68944" e_stop="68540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAATGCAGTCGAATTCAAGAAACGAAGGGAGGTTTGGAAATGACAGGGGGAGTAGATATGAGGGTGGAAGAGGTGATGGTGGTCGAGATCGAAAGGAGTCCTCCTCAAGGGGAGGAAGATTTGGAAGTGATGTAAGGAGTGGAAGTGAGGGTAGAAGAAGTGGAGGCCGAGATCGTATGGAGTCATTTTCGAAGGGAGGAAGGTTTGGAAGTGATAATGGGAGAGAAAGTGAAGGTAGAAGAAGTGGAGGCCAGGATCGGACAGAGTCGCTTCCAAGGAAGGGAGGGAGGTTTGGAAGTGAAATGGCAAGTTCGAGTGACAATAGGGGTAAAAGCAGGATTGGTAGTGGATATGGTAGAGATATGGCAGCACAAGGTGGTAATGGTAGGTTAGGGAGGAAAG</genome_strand>
        <mrna_strand>GTGGAATGCAGTCGAATTCAAGAAATGGAGGGAGGTTTGGAAATGAAAGGGGGAGTAGAAATGAGGGTGGAAGAGGTGATGGTGGTCGAGATCGAATGGGGTCCTCCTCAAGGGGAGGAAGGTTTGGAAGTGATATAAGGAGTGGAAGTGAGGGTAGAAGAAGTGGAGGCCAAGACCGTATGGAGTCATTTTCGAAGGGAGGAAGGTTTGGGAGTGATATGGGGAGAGAAAGTGAAGGTAGAAGAAGTGGAGGCCAGGATCGGATGGAGTCATTTCCAAGGAAGGGAGGGAGGTTTGGAAGTGAAATGGCAAGTTCCAGTGACAATAGGGGTAAAAGCAGGGTTGGTAGTGGATATGGTAGAGATATGGCAGCACAAGGTGGTAGTGGTAGGTTAGGGAGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462938" ref_strand="-" ref_description="SGN-E462938 [cPRO-13-K11]">
      <seq>tggttgatggatggtcccacacaggtgatgttggtgaatgccagccggatgggagcatgaaaattattgaccgcaagaaaaacattttcaagctctcccaaggagaatatgttgcagttgagaatctggagggcatttattctcttgcctctagtgtggattcaatatggatctatggtagtagctatgagtcatttcttgttgctgtcgtgaatcccaatatggaagctctgcgttcctgggccaatgagaatggaatgactggggattttgatactatatgtgagaacccaaaggcaaaaacatatatcctatcagaactaaccagtattgctaaggaaaaaaagctgaaaggctttgaatttatcaaagctgtgcaccttgaccctgtaccatttgacatggagcgtgaacttataaccccgactcacaagaaaaagagagcccagtttctcaaatactaccagaacaacattgatacactgtacaaaaacacaagataaacagccagacaccttgacttcaagttcgagctggagaaaagtaacaatgtatatgatgtcaaattctacatgcagttttatctcagctaatatttatcagttgtaattcattgttcattgtaccttataaaactccaattatgtatggctagttatgttacttgctatttcttcacaattgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="71370" stop="69734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71176" g_stop="71153" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71152" i_stop="71065" i_length="88">
            <donor d_prob="0.827" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71064" g_stop="70925" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="164" r_length="140" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70924" i_stop="70767" i_length="158">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70766" g_stop="70584" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="347" r_length="183" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70583" i_stop="70485" i_length="99">
            <donor d_prob="0.683" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70484" g_stop="70365" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="467" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70364" i_stop="70230" i_length="135">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70229" g_stop="70056" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="642" r_length="175" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="685" polyA_stop="695"/>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E462938" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71176" e_stop="71153"/>
          <exon e_start="71064" e_stop="70925"/>
          <exon e_start="70766" e_stop="70584"/>
          <exon e_start="70484" e_stop="70365"/>
          <exon e_start="70229" e_stop="70056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTGATGGATGGTTCCACACAGGTCTGACTTGACATATATCTGTGTTCTCAACCCAAAGTCTTGGTTTTTGGATACCTTGCCATTTGCTTACTGTATAAACTTGCAACAGGTGATGTCGGTGAATGGCAGCCGGATGGGAGCATGAAAATTGTTGACCGCAAGAAAAACATCTTCAAGCTCTCCCAAGGAGAATATGTTGCCGTTGAGAATCTGGAGGGCATTTATTCTCTTGCCTCTAGTGTTGATTCAGTATGTTTCTTTTATTTTTACAGATGTCTTGAATATTACGCTCACCCCTCTTAAGTTATGTTTCTTTTATACTTCAATATTAAATGATCAAGTCCACTCTACATATAGTTGCAGCACTGCATTTTATCTGAACGACTTTTTCTGTCCATTTGAAACAGATATGGATCTATGGTAGTAGCTATGAGTCATTTCTTGTTGCTGTCGTGAATCCCAATATGGAAGCTCTTCGTTCCTGGGCCAATGAGAATGGAATGACTGGGGATTTCGATACTATATGTGAGAACCCAAAGGCAAAAGCATATATCCTATCAGAACTAACCAATATTGCTAAGGAAAAAAAGGTCATTCCTTGTCCTGTATCTACATATATACAGCAGAGTTCTACACAGAATGACTGTTTCATTGGTTTTGAATTATTGAATGTGTGATTCCGTTTACAGTTGAAAGGCTTTGAATTTATCAAAGCTGTGCACCTTGACCCTGTACCATTTGACATGGAGCGTGAACTTATAACCCCGACTCACAAGAAAAAGAGAGCCCAGTTTCTCAAATACTACCAGGTTTGCTACTCTGCTTCTCCCAAGTTAGAATGCCCTTATAGCGAAAGGTCGAGTGCTTTCTAAGAGAAGTTTTGTTTCAAGTTGGAAGCCACTCTCTTGTTTATTGCTGACACATAACTAACATTGAAATTGCAGAACAACATTGATACACTGTACAAAAACACAAGATAAACAGCTAGACACCTTGACTTCAAGTTCGAGCTGGAGAAAAGTAAAAATGTATATGATGTCAAACTCTGCATGCAGTTTTAT-TCAGCTAATATTTATCAGTTGTAGTTCATTGTTATTTTTACCTTGTAAAACTCCAAT</genome_strand>
        <mrna_strand>TGGTTGATGGATGGTCCCACACAG........................................................................................GTGATGTTGGTGAATGCCAGCCGGATGGGAGCATGAAAATTATTGACCGCAAGAAAAACATTTTCAAGCTCTCCCAAGGAGAATATGTTGCAGTTGAGAATCTGGAGGGCATTTATTCTCTTGCCTCTAGTGTGGATTCA..............................................................................................................................................................ATATGGATCTATGGTAGTAGCTATGAGTCATTTCTTGTTGCTGTCGTGAATCCCAATATGGAAGCTCTGCGTTCCTGGGCCAATGAGAATGGAATGACTGGGGATTTTGATACTATATGTGAGAACCCAAAGGCAAAAACATATATCCTATCAGAACTAACCAGTATTGCTAAGGAAAAAAAG...................................................................................................CTGAAAGGCTTTGAATTTATCAAAGCTGTGCACCTTGACCCTGTACCATTTGACATGGAGCGTGAACTTATAACCCCGACTCACAAGAAAAAGAGAGCCCAGTTTCTCAAATACTACCAG.......................................................................................................................................AACAACATTGATACACTGTACAAAAACACAAGATAAACAGCCAGACACCTTGACTTCAAGTTCGAGCTGGAGAAAAGTAACAATGTATATGATGTCAAATTCTACATGCAGTTTTATCTCAGCTAATATTTATCAGTTGTAATTCATTGTTCATTGTACCTTATAAAACTCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463062" ref_strand="+" ref_description="SGN-E463062 [cPRO-13-B17]">
      <seq>aatggttggcactgttggtcctcctttaccaattatagatgtgtgtctagagtctgttcctgaaatggggtacgacgcccttggagatgcccctcgtggagagatatgcataagagggaagtgtttattctcaggatactataagcgtgaagacctcaccaaggaggtgttggttgatggatggttccacacaggtgatgttggtgaatggcagccggatgggagcatgaaaattattgaccgcaagaaaaacattttcaagctctcccaaggagaatatgttgcagttgagaatctggagggcatttattctcttgcctctagtgtggattcaatatggatctatggtagtagctatgagtcatttcttgttgctgtcgtgaatcccaatatggaagctctgcgttcctgggccaatgagaatggaatgactggggattttgatactatatgtgagaacccaaaggcaaaaacatatatcctatcagaactaaccagtattgctaaggaaaaaagctgaaaggctttgaatttatcaaagctgtgcaccttgaccctgtaccatttgacatggagcgtgaacttataaccccgactcacaagaaaaagagagcccagtttctcaaatactaccagaacaacattgatacactgtacaaaaacacaagataaacagccagacaccttgacttcaagttcgagctggagaaaagtaacaatgtatatgatgtcaaattctacatgcagttttatctcagctaatatttatcagttgtaattcattggtcattgtacctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="71646" stop="69769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71346" g_stop="71153" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71152" i_stop="71065" i_length="88">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71064" g_stop="70925" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="334" r_length="140" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70924" i_stop="70767" i_length="158">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70766" g_stop="70584" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="516" r_length="182" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70583" i_stop="70485" i_length="99">
            <donor d_prob="0.683" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70484" g_stop="70365" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="636" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70364" i_stop="70230" i_length="135">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70229" g_stop="70068" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="799" r_length="163" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E463062" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71346" e_stop="71153"/>
          <exon e_start="71064" e_stop="70925"/>
          <exon e_start="70766" e_stop="70584"/>
          <exon e_start="70484" e_stop="70365"/>
          <exon e_start="70229" e_stop="70068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTTGGCACTGTTGGTCCTCCTTTACCAATTATAGATGTGTGCCTAGAGTCTGTTCCTGAAATGGGGTATGATGCCCTTGGAGATACCCCTCGTGGAGAGATATGCATAAGAGGAAAGTGTTTATTCTCAGGATACTATAAGCGTGAAGACCTCACCAAGGAGGTGTTGGTTGATGGATGGTTCCACACAGGTCTGACTTGACATATATCTGTGTTCTCAACCCAAAGTCTTGGTTTTTGGATACCTTGCCATTTGCTTACTGTATAAACTTGCAACAGGTGATGTCGGTGAATGGCAGCCGGATGGGAGCATGAAAATTGTTGACCGCAAGAAAAACATCTTCAAGCTCTCCCAAGGAGAATATGTTGCCGTTGAGAATCTGGAGGGCATTTATTCTCTTGCCTCTAGTGTTGATTCAGTATGTTTCTTTTATTTTTACAGATGTCTTGAATATTACGCTCACCCCTCTTAAGTTATGTTTCTTTTATACTTCAATATTAAATGATCAAGTCCACTCTACATATAGTTGCAGCACTGCATTTTATCTGAACGACTTTTTCTGTCCATTTGAAACAGATATGGATCTATGGTAGTAGCTATGAGTCATTTCTTGTTGCTGTCGTGAATCCCAATATGGAAGCTCTTCGTTCCTGGGCCAATGAGAATGGAATGACTGGGGATTTCGATACTATATGTGAGAACCCAAAGGCAAAAGCATATATCCTATCAGAACTAACCAATATTGCTAAGGAAAAAAAGGTCATTCCTTGTCCTGTATCTACATATATACAGCAGAGTTCTACACAGAATGACTGTTTCATTGGTTTTGAATTATTGAATGTGTGATTCCGTTTACAGTTGAAAGGCTTTGAATTTATCAAAGCTGTGCACCTTGACCCTGTACCATTTGACATGGAGCGTGAACTTATAACCCCGACTCACAAGAAAAAGAGAGCCCAGTTTCTCAAATACTACCAGGTTTGCTACTCTGCTTCTCCCAAGTTAGAATGCCCTTATAGCGAAAGGTCGAGTGCTTTCTAAGAGAAGTTTTGTTTCAAGTTGGAAGCCACTCTCTTGTTTATTGCTGACACATAACTAACATTGAAATTGCAGAACAACATTGATACACTGTACAAAAACACAAGATAAACAGCTAGACACCTTGACTTCAAGTTCGAGCTGGAGAAAAGTAAAAATGTATATGATGTCAAACTCTGCATGCAGTTTTAT-TCAGCTAATATTTATCAGTTGTAGTTCATTGTTATTTTTACCTTG</genome_strand>
        <mrna_strand>AATGGTTGGCACTGTTGGTCCTCCTTTACCAATTATAGATGTGTGTCTAGAGTCTGTTCCTGAAATGGGGTACGACGCCCTTGGAGATGCCCCTCGTGGAGAGATATGCATAAGAGGGAAGTGTTTATTCTCAGGATACTATAAGCGTGAAGACCTCACCAAGGAGGTGTTGGTTGATGGATGGTTCCACACAG........................................................................................GTGATGTTGGTGAATGGCAGCCGGATGGGAGCATGAAAATTATTGACCGCAAGAAAAACATTTTCAAGCTCTCCCAAGGAGAATATGTTGCAGTTGAGAATCTGGAGGGCATTTATTCTCTTGCCTCTAGTGTGGATTCA..............................................................................................................................................................ATATGGATCTATGGTAGTAGCTATGAGTCATTTCTTGTTGCTGTCGTGAATCCCAATATGGAAGCTCTGCGTTCCTGGGCCAATGAGAATGGAATGACTGGGGATTTTGATACTATATGTGAGAACCCAAAGGCAAAAACATATATCCTATCAGAACTAACCAGTATTGCTAAGG-AAAAAAG...................................................................................................CTGAAAGGCTTTGAATTTATCAAAGCTGTGCACCTTGACCCTGTACCATTTGACATGGAGCGTGAACTTATAACCCCGACTCACAAGAAAAAGAGAGCCCAGTTTCTCAAATACTACCAG.......................................................................................................................................AACAACATTGATACACTGTACAAAAACACAAGATAAACAGCCAGACACCTTGACTTCAAGTTCGAGCTGGAGAAAAGTAACAATGTATATGATGTCAAATTCTACATGCAGTTTTATCTCAGCTAATATTTATCAGTTGTAATTCATTGGTCATTGTACCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E430950" ref_strand="+" ref_description="SGN-E430950 [STM-54-L9]">
      <seq>agttgagaaagctaaagaagggagatcaaatggaaggccatcaagaggtcttgtttatcgtaatgtgttagccaaagatggtttcaggcctttatctcattcccttcaaagttgctgggatattttctgtgagtctgtcagaaaatttccagataaccgaatgttaggtgagcgggaaatgtcccacggtcaggcaggtaaatatatttggttaacttatagggaggtgtatgatatagtgttaaaagttggagcttctatgcgtgtctgcggtgttaagcaaggtggaaaatgtggtatatacggggccaattgctccaactgggtaataagcatgcaggcctgcaatgctcatggtctttattgcgtccccttatatgacactctaggtgctggtgcagtagagtacatcatttgccatgcagaagtttctgttgcttttgcggaggaaactaaaatttctgaggtgctgaaagcttttcctaacgctggaaagttcctgaaaagtctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="76941" stop="74144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76641" g_stop="76513" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76512" i_stop="75696" i_length="817">
            <donor d_prob="0.914" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75695" g_stop="75632" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="193" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75631" i_stop="75541" i_length="91">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.908" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75540" g_stop="75451" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="283" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75450" i_stop="75260" i_length="191">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75259" g_stop="75203" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="340" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75202" i_stop="75001" i_length="202">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75000" g_stop="74952" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="389" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74951" i_stop="74695" i_length="257">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74694" g_stop="74618" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="466" r_length="77" r_score="0.948"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74617" i_stop="74486" i_length="132">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.782" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74485" g_stop="74446" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="506" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="74445" i_stop="74365" i_length="81">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74364" g_stop="74359" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="512" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E430950" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76641" e_stop="76513"/>
          <exon e_start="75695" e_stop="75632"/>
          <exon e_start="75540" e_stop="75451"/>
          <exon e_start="75259" e_stop="75203"/>
          <exon e_start="75000" e_stop="74952"/>
          <exon e_start="74694" e_stop="74618"/>
          <exon e_start="74485" e_stop="74446"/>
          <exon e_start="74364" e_stop="74359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGAAAAAGCTAAAGAAGTGAGATCAAATGGAAGGCCGTCAAGAGGCCCTGTTTATCGTAATGTGTTAGCCAAAGATGGTTTTAGGCCTTTATCTCAATCCCTTCAAAGTTGTTGGGATATTTTCTGGTCAGTCCATTTACACCACCACACCATGCACCCAAAAAATATTTAGTTACTGGTATCGAAAATAATCTAAAAATTTCGGCATCTTAAAAAACATAAAAGTAGAAGTCCAAAATTATTTATTTAATTTCAAGATATACCTGTTTACCATATATTCCTTAATTTATTTTGAGGTGTTTAATTTATGAAATGATTTTTAAATTTATTTTATTTTGTTTTTCTTTATTATATTTGAATAATTATGTTAATATTATATCAATAATTTTTTTATGTAATATTGATCAAAATTTGAAAACATTTTAATTTGATAAAAATAAAAATAAAATTTAAAATAATTTATCTCTATAAAATTATTTTAATATTAAAAGTGCATCAAAAGTACTTTGTAAAAATTAGTCAGACACAATTTTTTTATTAAAAATATTTTTCAAATAAATAAATCGAAAAGATGAACTAACTTGAAAAAAAAATTAAAAATTTTAGCGTCAATATGATCCTGGAAGCTCCCAAAATGTATATGAGCTGCCAATAATGAAAAGCCGTAACGTCATGATTTTTTCTCAGTTTCTCCTATTTTCATGAAATTGCCTCCTTCTCTTTGTGTTTCCTCTTTTTCATTTTTTCACCAAACAAAATGAGTTAGCTTTTTATTTCATTATCTCAAAAAGTCATTCTTTTTATTCTTAATTTTATATTTTTTTCAATAAAAAATTGATTTTAACTTGTATTTCTATCAATCAACTCTACCAGAGTATATCTTTCTCCATTACTATTTCCACTTACCTCAATACACATTTTTTATTGTTATGTTGATGTGCAGTGAGTCTGTCAGAAAATTTCCACATAACCGAATGTTAGGTGAGCGGGAAATGTCTCATGGTCAGGTATATACATATTTAGTACAATTTCTTTGAGCACATTTCCGTTTTCTTAAGCTCAGGTTTTTTTGACTTTTGTGTCTAATTTAATTTGTAGGCAGGTAAATACATTTGGTTAACTTATAGGGAGGTGTATGATCTCGTGTTAAAAGTTGGAGCTTCTATGCGTGTCTGCGGTGTTAAGCAAGTAAGACTTTCATACTGTAAAATCAAGCAGATTTTTCTCTTGATGCTTTAGTAATCTAGTTTACGTTTCATATGTTTTAACAAGCGTACGGAACATTCCTTCAAAGTGTTAGAGAAATAGATGCAGTTTTGTCAGAACCGTGGATTGAATTCTGTTATGTAATGAGGTTTTATCTGATTGCTTATATACAGGGTGGAAAATGTGGTATATACGGGGCCAATTGCTCGAACTGGGTAATAAGCATGCAGGTATATAACTCCTAATATACTTTAATTTCATTAGACCATAAATCTTTTAAGAATATAAATTGGATAACGGCGTTGTCTCAACTAATCTCAGAAACATTCTTTATGATCTTAAGAATATATTTTTTTTTTCATATTGTACATCAGCTTAGTATATGGTGTCCAATAAGTAAAGCAAGCAAAATGGCGTTTTCTTTTTGTGCAGGCCTGCAATGCTCTTGGTCTTTATTGCGTCCCCTTATATGACACTCTAGGTAAGCGTGTCACCTCTCCAGAATGTTAATGTTTTTAGGACATAGCATCACAGCTACAAGAAAAGTATGTTACCAATGCTTCACGACATTTTTGTCAGATTTGATTTATTCGGATCAGTCTAAACTACACATAAAAAAGTATTTTGAGTGAAATGCAAGAAGAGCATTATAATAGCTAGAGCGTAATTAATATATGCATTTGCTTTTCCAATATATAAATGTTCCAACTCATTATTGGAGCATTATTATGGCTTCAGGCGCTGGTGCAGTAGAGTATATCATTTGCCATGCAGAAGTTTCTGTTGCTTTTGCAGAGGAAACTAAAATTTTTGAGGTAAGAATGATCACACTACATCTTGAAACTTTACTTGAAATTTGATCCATTTCATTAGTCTACTTGTCTCCAATCTTTTTCTTCATCTGCCCGAAGTTCATTCCACCAGCAACTGACTATTTTACGTTTTAGGTGCTGAAAGCTTTTCCTAATGCTGGAAAGTTCCTGAAAAGTAAGTAACTACTGTTTTAACTTCTTACTATTAGAGAAATGATCCATTTGAAGGTGCTAAGTTTGTCGCTCCTTTATGTAGGTCTCA</genome_strand>
        <mrna_strand>AGTTGAGAAAGCTAAAGAAGGGAGATCAAATGGAAGGCCATCAAGAGGTCTTGTTTATCGTAATGTGTTAGCCAAAGATGGTTTCAGGCCTTTATCTCATTCCCTTCAAAGTTGCTGGGATATTTTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTCTGTCAGAAAATTTCCAGATAACCGAATGTTAGGTGAGCGGGAAATGTCCCACGGTCAG...........................................................................................GCAGGTAAATATATTTGGTTAACTTATAGGGAGGTGTATGATATAGTGTTAAAAGTTGGAGCTTCTATGCGTGTCTGCGGTGTTAAGCAA...............................................................................................................................................................................................GGTGGAAAATGTGGTATATACGGGGCCAATTGCTCCAACTGGGTAATAAGCATGCAG..........................................................................................................................................................................................................GCCTGCAATGCTCATGGTCTTTATTGCGTCCCCTTATATGACACTCTAG.................................................................................................................................................................................................................................................................GTGCTGGTGCAGTAGAGTACATCATTTGCCATGCAGAAGTTTCTGTTGCTTTTGCGGAGGAAACTAAAATTTCTGAG....................................................................................................................................GTGCTGAAAGCTTTTCCTAACGCTGGAAAGTTCCTGAAAA.................................................................................GTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E607236" ref_strand="+" ref_description="SGN-E607236 [23197]">
      <seq>tttttgtttcatctttatgaagattatagatatattttttaaaatttcttcttgtgttacaatagccaaacaaaagtttatcaagatgaagaagaaagtttgaagccggtgtaagattcgtcaaaggagatgatcaaaaattaatttgctacaagtcatcaaaatgaagaagaaagtttaatggcggtggaagattcatcaagagttggtcagattataatttgaaaaagtagaagtttcaataatttacaaatatatagatgcacttattgttgcttatataatttttcaattaattatttatccattaagatatgtaccattcaagaacaagattatattacaaagcacactttttgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="80274" stop="79327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79997" g_stop="79632" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="377"/>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E607236" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E607236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79997" e_stop="79632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTCCAGCTTTTATGAAGATTATAGATATGTATATTTTTTTAGAATTTTTTCTTGTGTTACAATATTCAAGCAAAAGTTTTTCAAGATGAAGAAGAAAGGTTAAAGGTGGTGTAAGATTCATCAAAAGAGATGATTAAAAATTAATTTGATACAAGTCATCAATATGAAGAAGAAAGTTTAACAGTGCTGGAAGATTCATCAAGAGTTGGTCAGAGTAAAATTTGAAAAAGTAGAAGTTTCAATAATTTACAAATATATAGATGCACTTATTGTTGCTTATATATTTTTTCAATTAATTATTTATCCATCAAGATATGTATCCTTCAAGAACAAGATTATATTACAAAGCATACTTTTTGT</genome_strand>
        <mrna_strand>TTTTTGTTTCATC-TTTATGAAGATTATAG--A--TATAT-TTTTTAAAATTTCTTCTTGTGTTACAATAGCCAAACAAAAGTTTATCAAGATGAAGAAGAAAGTTTGAAGCCGGTGTAAGATTCGTCAAAGGAGATGATCAAAAATTAATTTGCTACAAGTCATCAAAATGAAGAAGAAAGTTTAATGGCGGTGGAAGATTCATCAAGAGTTGGTCAGATTATAATTTGAAAAAGTAGAAGTTTCAATAATTTACAAATATATAGATGCACTTATTGTTGCTTATATAATTTTTCAATTAATTATTTATCCATTAAGATATGTACCATTCAAGAACAAGATTATATTACAAAGCACACTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="91445" stop="92341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91745" g_stop="92067" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91745" e_stop="92067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAACAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTTGCAAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGTG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCAC-AATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="91445" stop="92341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91745" g_stop="92036" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91745" e_stop="92036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAACAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTTGCAAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCAC-AATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E226869" ref_strand="+" ref_description="SGN-E226869 [cLEL-26-O4](-)">
      <seq>ggcacgaggtatactctgcctcctgttgggcataccactacttgttagtgcaatggatctattatatgtataagtgatatatgacatttgaaaaaatctcaatctttaataaaaagttaaaattctatgactgccacaaattaaaaagttgtggtagtggtagtattggtacaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="93423" stop="12245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93125" g_stop="92951" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92950" i_stop="92290" i_length="661">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92289" g_stop="92270" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="195" r_length="20" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E226869" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93125" e_stop="92951"/>
          <exon e_start="92289" e_stop="92270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACAGGGTATACTCTGCCTCCTGTTGGACATACCACTACTTGTTAGTGCAATGGATCTATTATATGTATAAGTGATATATGACATTTGAAAAAATCTCAATCTTTAATAAAAAGTTAAAATTCTATGACTACCACAAATTAAAAAGTTGTGGTAGTGGTAGTATTGGTACTAAATCCTAGTGGGTTGTTCTTCTGTTTGCTTTCATCCCTTGTGCAATTATTTATCAAAAACTGTAACTATTGCATAACTTTGTGTAGCAAAACTGAAGCTTTTTCACAAAATGTGAATAATATATGGCTGAAAATGGTAACGCCAATTCTAGAACTCGTCCAATTAATTAGTCACAAATTTATCAACTCAAACTATTTGTAGAATCGTATCGTACAAGTAATTAATCTAGGTGAATTTTTCCTTAAACATGCCTAGATCCGGAGCGAAAAAGGCAAGAAAATTAGCCAAATATTCAAAAAAGGATAACAAAATTGAATTGAGAATCAAAAGGGTGGCATTTAGATCTCTAAAAAAAAAAACCTATCTAAATTGGGTAAAAGGAGCAACCATGCGCCGCAGCCTTACAAGTAACGCCCTGCGCCTCCCCTCGCCTCGCCTCTTTCCTTTTTTCTTTTTTTTTTTAAATTATGTTTTAATTTATTTATTTTTTAGTTGGTTAGTGTTTTTTTTAGAAGTTTTTCCTTTTAATTTTTTTTAGTAAAATTTTAAAAAATTATATATTTTATAGTAAGATTTTAAAATAAATGGCAAGATTTTGATATTTTTTTAACTTGAATTAATAAAATCTTCCCTAAAAAATCGGAATGAAAATTTGCTAAAAGAATAAAAAAAACAAATACAA</genome_strand>
        <mrna_strand>GGCACGAGGTATACTCTGCCTCCTGTTGGGCATACCACTACTTGTTAGTGCAATGGATCTATTATATGTATAAGTGATATATGACATTTGAAAAAATCTCAATCTTTAATAAAAAGTTAAAATTCTATGACTGCCACAAATTAAAAAGTTGTGGTAGTGGTAGTATTGGTACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229096" ref_strand="-" ref_description="SGN-E229096 [cLEL-29-N7](-)">
      <seq>tttttttttttttttttgggtaccaatactaccactaccacaactttttaatttgtggtagtcatagaattttaactttttattaaagattgagattttttcaaatgtcatatatcacttatacatataatagatccattgcactaacaagtagtggtatgtccaacaggaggcagagtataccctgtgtgacattgttgtgagccaatctgaaagcgtttgggatcataattcgtatgtacaagtctattctttatacacttgcaaacagcagaataatcgccgcgctttttcatcatgttacttatatctatcagtcctctgcagcatctgcctgatggcttgatcgaatgatatctcccttgaatgtacgaaagacaaggggctagccttttcgaaactgtttcacaagaaggtttgctcgtcctggtgttgctaaaacaaacaacagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="12245" stop="93690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92588" g_stop="92607" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.700"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92608" i_stop="92954" i_length="347">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92955" g_stop="93390" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="455" r_length="435" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E229096" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229096" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92588" e_stop="92607"/>
          <exon e_start="92955" e_stop="93390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGTTTTTTTTTTTAGAGATCTAAATGCCACCCTTTTGATTCTCAATTCAATTTTGTTATCCTTTTTTGAATATTTGGCTAATTTTCTTGCCTTTTTCGCTCCGGATCTAGGCATGTTTAAGGAAAAATTCACCTAGATTAATTACTTGTACGATACGATTCTACAAATAGTTTGAGTTGATAAATTTGTGACTAATTAATTGGACGAGTTCTAGAATTGGCGTTACCATTTTCAGCCATATATTATTCACATTTTGTGAAAAAGCTTCAGTTTTGCTACACAAAGTTATGCAATAGTTACAGTTTTTGATAAATAATTGCACAAGGGATGAAAGCAAACAGAAGAACAACCCACTAGGATTTAGTACCAATACTACCACTACCACAACTTTTTAATTTGTGGTAGTCATAGAATTTTAACTTTTTATTAAAGATTGAGATTTTTTCAAATGTCATATATCACTTATACATATAATAGATCCATTGCACTAACAAGTAGTGGTATGTCCAACAGGAGGCAGAGTATACCCTGTGTGACATTGTTGTGAGCCAATCTGAAAGCGTTTGGGATCATAATTCGTATGTACAAGTCTATTCTTTATACACTTGCAAACAGCAGAATAATCGCCGCGCTTTTTCATCATGTTACTTATATCTATCAGTCCTCTGCAGCATCTGCCTGATGGCTTGATCGAATGATATCTCCCTTGAATGTACGAAAGACAAGGGGCTAGCCTTTTCGAAACTGTTTCACAAGAAGGTTTGCTCGTTCCTGGTGTTGCTAAAACAAACAACAGAATG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTGGG...........................................................................................................................................................................................................................................................................................................................................................TACCAATACTACCACTACCACAACTTTTTAATTTGTGGTAGTCATAGAATTTTAACTTTTTATTAAAGATTGAGATTTTTTCAAATGTCATATATCACTTATACATATAATAGATCCATTGCACTAACAAGTAGTGGTATGTCCAACAGGAGGCAGAGTATACCCTGTGTGACATTGTTGTGAGCCAATCTGAAAGCGTTTGGGATCATAATTCGTATGTACAAGTCTATTCTTTATACACTTGCAAACAGCAGAATAATCGCCGCGCTTTTTCATCATGTTACTTATATCTATCAGTCCTCTGCAGCATCTGCCTGATGGCTTGATCGAATGATATCTCCCTTGAATGTACGAAAGACAAGGGGCTAGCCTTTTCGAAACTGTTTCACAAGAAGGTTTGCTCG-TCCTGGTGTTGCTAAAACAAACAACAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E230420" ref_strand="+" ref_description="SGN-E230420 [cLEL-35-M15](-)">
      <seq>attatgatcccagtcgcttacagattggctctcaacaatgtcacacagggtatactctgcctcctgttggacaaacccctacttggtagtgcaatggatctattatatgtataagtgatatatgacatttgaaaaaatctcaatcgttaatgaacagttataattctgtgtctcccacaaattaaaaagctagtggtagtggtagtattggttctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="93466" stop="92650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93166" g_stop="92951" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="218" polyA_stop="233"/>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E230420" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>216</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93166" e_stop="92951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGATCCCAAACGCTTTCAGATTGGCTCACAACAATGTCACACAGGGTATACTCTGCCTCCTGTTGGACATACCACTACTTGTTAGTGCAATGGATCTATTATATGTATAAGTGATATATGACATTTGAAAAAATCTCAATCTTTAATAAAAAGTTAAAATTCTATGACTACCACAAATTAAAAAG-TTGTGGTAGTGGTAGTATTGGTACTAA</genome_strand>
        <mrna_strand>ATTATGATCCCAGTCGCTTACAGATTGGCTCTCAACAATGTCACACAGGGTATACTCTGCCTCCTGTTGGACAAACCCCTACTTGGTAGTGCAATGGATCTATTATATGTATAAGTGATATATGACATTTGAAAAAATCTCAATCGTTAATGAACAGTTATAATTCTGTGTCTCCCACAAATTAAAAAGCTAGTGGTAGTGGTAGTATTGGTTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E230922" ref_strand="+" ref_description="SGN-E230922 [cLEL-35-M15](-)">
      <seq>aatgtcactcagggtaaactctgcctcctgatgaacaaacccctacttgttagtgcaatggatctattatatgtataagtgatatatgacatttgaaaaaatctcaatcgttaatacacagttaaaattctatgactcccacaaattaaaaagttgtggtagtggtagtattggtactaaaaacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="93430" stop="92645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93130" g_stop="92951" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="181" polyA_stop="196"/>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E230922" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>180</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93130" e_stop="92951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTCACACAGGGTATACTCTGCCTCCTGTTGGACATACCACTACTTGTTAGTGCAATGGATCTATTATATGTATAAGTGATATATGACATTTGAAAAAATCTCAATCTTTAATAAAAAGTTAAAATTCTATGACTACCACAAATTAAAAAGTTGTGGTAGTGGTAGTATTGGTACTAA</genome_strand>
        <mrna_strand>AATGTCACTCAGGGTAAACTCTGCCTCCTGATGAACAAACCCCTACTTGTTAGTGCAATGGATCTATTATATGTATAAGTGATATATGACATTTGAAAAAATCTCAATCGTTAATACACAGTTAAAATTCTATGACTCCCACAAATTAAAAAGTTGTGGTAGTGGTAGTATTGGTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578618" ref_strand="+" ref_description="SGN-E578618 [85737]">
      <seq>cacatcatcagatttctctttcccccaaatctccatcgccggcgaacaagcgcgaaactaccaaaatctatcgaccggcatcaatcaaccggcaatggagatgacggaaggatcagtgattcatcaagttctcgtcaaattcctcgacggaaagcacaaagccctaaatttcactaccccatccatctccaccctaaccctaaagcacaaaatacagagcctaacttcaattccttctcaccttcagcttctactcccttccaattcattttaccctcttcatgaccaccaaaccctaaatctcgcaaacggtttacccgaaacccgaaatatcggatcgccggaaaatctcacaaatttgtctgcggagaagggcaattttccggttgtggtgaatttgttgcttcggctaaggggtggtaaaggaggtttcggttcattgctgagaggagcggcaaccaaggcagggcagaagaagacgaataattttgacgcgtgtagggatatgagtggtagaaggtttgaggcatgtgaatgcggaaaagaaagctggaaaagtggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98199" stop="99352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98492" g_stop="99052" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E578618" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98492" e_stop="99052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAATTTAGATTTCTCTTTCCCCCAAATCTCAATCGCCGGCGAAGAAGCGCGACACTACCAAAATCAATCGACCGGCATCAATCAACCGACAATGGAGATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAGAGAAATTTTCCGGTTGTGGTGAATTTGTTGCTTCGGCTAAGGGGTGGTAAAGGAGGCTTTGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGG-TTGAGGCATGTGAATGCGGAAAAG-AAGCTGGAAGAGTGGAG</genome_strand>
        <mrna_strand>CACATCATCAGATTTCTCTTTCCCCCAAATCTCCATCGCCGGCGAACAAGCGCGAAACTACCAAAATCTATCGACCGGCATCAATCAACCGGCAATGGAGATGACGGAAGGATCAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCCTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTCTACTCCCTTCCAATTCATTTTACCCTCTTCATGACCACCAAACCCTAAATCTCGCAAACGGTTTACCCGAAACCCGAAATATCGGATCGCCGGAAAATCTCACAAATTTGTCTGCGGAGAAGGGCAATTTTCCGGTTGTGGTGAATTTGTTGCTTCGGCTAAGGGGTGGTAAAGGAGGTTTCGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTTGAGGCATGTGAATGCGGAAAAGAAAGCTGGAAAAGTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E442317" ref_strand="+" ref_description="SGN-E442317 [cSTA-33-A9]">
      <seq>aagatttctctttcccccaaatctcaatcgccggcgaacaagcgcgaaactaccaaaatctatcgaccggcatcaatcaaccggcaatggagatgacggaaggatcagtgattcatcaagttctcgtcaaattcctcgacggaaagcacaaagccctaaatttcactaccccatccatctccaccctaaccctaaagcacaaaatacagagcctaacttcaattccttctcaccttcagcttctactcccttccaattcattttaccctcttcatgaccaccaaaccctaaatctcgcaaacggtttacccgaaacccgaaatatcggatcgccggaaaatctcacaaatttgtctgcggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98201" stop="99161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98500" g_stop="98861" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E442317" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98500" e_stop="98861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTTCTCTTTCCCCCAAATCTCAATCGCCGGCGAAGAAGCGCGACACTACCAAAATCAATCGACCGGCATCAATCAACCGACAATGGAGATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCACAAATTTGTCTCCGGAG</genome_strand>
        <mrna_strand>AAGATTTCTCTTTCCCCCAAATCTCAATCGCCGGCGAACAAGCGCGAAACTACCAAAATCTATCGACCGGCATCAATCAACCGGCAATGGAGATGACGGAAGGATCAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCCTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTCTACTCCCTTCCAATTCATTTTACCCTCTTCATGACCACCAAACCCTAAATCTCGCAAACGGTTTACCCGAAACCCGAAATATCGGATCGCCGGAAAATCTCACAAATTTGTCTGCGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272818" ref_strand="+" ref_description="SGN-E272818 [cLEM-25-I13]">
      <seq>gaggcaaatctcaatcgccggcgaagaagcgccgacacctacccaaaatcaatcgaccggcatcaatcaaccgacaatggagatgactgaaggattagtgattcatcaagttctcgtcaaattcctcgacggaaagcaccaaagccttaaatttcactaccccatccatctccaccctaaccctaaagcacaaaataccagagcctaacttcaattccttctcaccttcagcttttactgcctttcaattcgttctacccctcttcaggaccaccaagccctatatctcacaaacgggttgcccgaccaccgaaatatcgggtcgccggaaaatctcaccaaatttgtctccggagaagagaaattttccggttgtggtgaatttgttgcttcggctaaggggtggtaaaggaggctttggttcattgctgagaggagcggcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98217" stop="99250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98513" g_stop="98950" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E272818" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98513" e_stop="98950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCAAATCTCAATCGCCGGCGAAGAAGCG-CGACA-CTA-CCAAAATCAATCGACCGGCATCAATCAACCGACAATGGAGATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCA-CAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATA-CAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTA-CCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCA-CAAATTTGTCTCCGGAGAAGAGAAATTTTCCGGTTGTGGTGAATTTGTTGCTTCGGCTAAGGGGTGGTAAAGGAGGCTTTGGTTCATTGCTGAGAGGAGCGGCAAC</genome_strand>
        <mrna_strand>GAGGCAAATCTCAATCGCCGGCGAAGAAGCGCCGACACCTACCCAAAATCAATCGACCGGCATCAATCAACCGACAATGGAGATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACCAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACCAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACCACCGAAATATCGGGTCGCCGGAAAATCTCACCAAATTTGTCTCCGGAGAAGAGAAATTTTCCGGTTGTGGTGAATTTGTTGCTTCGGCTAAGGGGTGGTAAAGGAGGCTTTGGTTCATTGCTGAGAGGAGCGGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571342" ref_strand="+" ref_description="SGN-E571342 [12707]">
      <seq>caaatctccatcgccggcgaacaagcgcgaaactaccaaaatctatcgaccggcatcaatcaaccggcaatggagatgacggaaggatcagtgattcatcaagttctcgtcaaattcctcgacggaaagcacaaagccctaaatttcactaccccatccatctccaccctaaccctaaagcacaaaatacagagcctaacttcaattccttctcaccttcagcttctactcccttccaattcattttaccctcttcatgaccaccaaaccctaaatctcgcaaacggtttacccgaaacccgaaatatcggatcgccggaaaatctcacaaatttgtctgcggagaagggcaattttccggttgtggtgaatttgttgcttcggctaaggggtggtaacaggaggtttcggttcattgctgagaggagcggaaccaaggcagggcagaagaagacgaataattttgacgcgtgtagggatatgagtggtagaaggttgaggcatgtgaatgcggaaaagaagctggaagagtggagagcagaagcagaagagaggaaattggagaagatggcgggatgagtttcttgaagaagaatgcaaaggaaagctgcgaagaaaggtacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98217" stop="99439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98517" g_stop="99140" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E571342" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98517" e_stop="99140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTCAATCGCCGGCGAAGAAGCGCGACACTACCAAAATCAATCGACCGGCATCAATCAACCGACAATGGAGATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAGAGAAATTTTCCGGTTGTGGTGAATTTGTTGCTTCGGCTAAGGGGTGGTAA-AGGAGGCTTTGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGAGGCATGTGAATGCGGAAAAGAAGCTGGAAGAGTGGAGAGCAGAAGCAGAAGAGAGGAAATTGGAGAAGATGGC-GGATGAGTTTCTT-AAGAAGAATGCAAAGG-AAGCTGCGAAGAAAGGTAAAAAG</genome_strand>
        <mrna_strand>CAAATCTCCATCGCCGGCGAACAAGCGCGAAACTACCAAAATCTATCGACCGGCATCAATCAACCGGCAATGGAGATGACGGAAGGATCAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCCTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTCTACTCCCTTCCAATTCATTTTACCCTCTTCATGACCACCAAACCCTAAATCTCGCAAACGGTTTACCCGAAACCCGAAATATCGGATCGCCGGAAAATCTCACAAATTTGTCTGCGGAGAAGGGCAATTTTCCGGTTGTGGTGAATTTGTTGCTTCGGCTAAGGGGTGGTAACAGGAGGTTTCGGTTCATTGCTGAGAGGAGCGG-AACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGAGGCATGTGAATGCGGAAAAGAAGCTGGAAGAGTGGAGAGCAGAAGCAGAAGAGAGGAAATTGGAGAAGATGGCGGGATGAGTTTCTTGAAGAAGAATGCAAAGGAAAGCTGCGAAGAAAGGTACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269152" ref_strand="+" ref_description="SGN-E269152 [cLEI-16-E12]">
      <seq>aaatctcaatcgccggcgaagaagcgcgacactaccaaaatcaatcgaccggcgtcaatcaaccgacaatggagatgactgaaggattagtgattcatcaagttctcgtcaaattcctcgacggaaagcacaaagccttaaatttcactaccccatccatctccaccctaaccctaaagcacaaaatacagagcctaacttcaattccttctcaccttcagcttttactgcctttcaattcgttctaccctcttcaagaccaccaagccctatatctcacaaacgggttgcccgacaaccgaaatatcgggtcgccggaaaatctcacaaatttgtctccggagaagagaaattttccggttgtggtgaatttgttgcttcggctaaagggtggtaaaggaggctttggttcattgctgagaggagcggcaaccaaggcagggcagaagaagacgaataattttgacgcgtgtagggatatgagtggtagaaggttgaggcatgtgaatgcggaaaagaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98218" stop="99340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98518" g_stop="99040" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E269152" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98518" e_stop="99040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTCAATCGCCGGCGAAGAAGCGCGACACTACCAAAATCAATCGACCGGCATCAATCAACCGACAATGGAGATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAGAGAAATTTTCCGGTTGTGGTGAATTTGTTGCTTCGGCTAAGGGGTGGTAAAGGAGGCTTTGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGAGGCATGTGAATGCGGAAAAGAAGCT</genome_strand>
        <mrna_strand>AAATCTCAATCGCCGGCGAAGAAGCGCGACACTACCAAAATCAATCGACCGGCGTCAATCAACCGACAATGGAGATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCTCTTCAAGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAGAGAAATTTTCCGGTTGTGGTGAATTTGTTGCTTCGGCTAAAGGGTGGTAAAGGAGGCTTTGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGAGGCATGTGAATGCGGAAAAGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272857" ref_strand="+" ref_description="SGN-E272857 [cLEM-25-K8]">
      <seq>aaatctcaatcgccggcgaagaagcgcgacactggcaaaatcaatcgaccggcatcaatcaaccgacaatggagatgactgaaggattagtgattcatcaagttctcgtcaaattcctcgacggaaagcacaaagccttaaatttcactaccccatccatcttcaccctaaccctaaagcacaaaatacagagcctaacttcaattccttctcaccttcagcttttactgcctttcaattcgttctaccctcttcaggaccaccaagccctatatctcacaaacgggttgcccgacaaccgaaatatcgggtcgccggaaaatctcacaaatttgtctccggagaagagaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98218" stop="99173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98518" g_stop="98873" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E272857" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98518" e_stop="98873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTCAATCGCCGGCGAAGAAGCGCGACACTACCAAAATCAATCGACCGGCATCAATCAACCGACAATGGAGATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAGAGAAATTTT</genome_strand>
        <mrna_strand>AAATCTCAATCGCCGGCGAAGAAGCGCGACACTGGCAAAATCAATCGACCGGCATCAATCAACCGACAATGGAGATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCTTAAATTTCACTACCCCATCCATCTTCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAGAGAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264933" ref_strand="+" ref_description="SGN-E264933 [cLEI-10-D3]">
      <seq>ctcaatcgccggcgaagaagcgcgacactaccaaaatcaatcgaccggcatcaatcaaccgacaatggagatgactgaaggattagtgattcatcaagttctcgtcaaattcctcgacggaaagcacaaagccttaaatttcactaccccatccatctccaccctaaccctaaagcacaaaatacagagcctaacttcaattccttctcaccttcagcttttactgcctttcaattcgttctaccctcttcaggaccaccaagccctatatctcacaaacgggttgcccgacaaccgaaatatcgggtcgccggaaaatctcacaaatttgtctccggagaagagaaattttccggttgtggtgaatttgttgcttcggctaaggggtggtaaaggaggctttggttcattgctgagaggagcggcaaccaaggcagggcagaagaagacgaataattttgacgcgtgtagggatatgagtggtagaaggttgaggcatgtgaatgcggaaaagaagctggaagagtggagagcagaagcagaagagaggaaattggagaagatggcggatgagtttcttaagaagaatgcaaaggaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98222" stop="99423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98522" g_stop="99123" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E264933" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98522" e_stop="99123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATCGCCGGCGAAGAAGCGCGACACTACCAAAATCAATCGACCGGCATCAATCAACCGACAATGGAGATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAGAGAAATTTTCCGGTTGTGGTGAATTTGTTGCTTCGGCTAAGGGGTGGTAAAGGAGGCTTTGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGAGGCATGTGAATGCGGAAAAGAAGCTGGAAGAGTGGAGAGCAGAAGCAGAAGAGAGGAAATTGGAGAAGATGGCGGATGAGTTTCTTAAGAAGAATGCAAAGGAAGCTG</genome_strand>
        <mrna_strand>CTCAATCGCCGGCGAAGAAGCGCGACACTACCAAAATCAATCGACCGGCATCAATCAACCGACAATGGAGATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAGAGAAATTTTCCGGTTGTGGTGAATTTGTTGCTTCGGCTAAGGGGTGGTAAAGGAGGCTTTGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGAGGCATGTGAATGCGGAAAAGAAGCTGGAAGAGTGGAGAGCAGAAGCAGAAGAGAGGAAATTGGAGAAGATGGCGGATGAGTTTCTTAAGAAGAATGCAAAGGAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426402" ref_strand="+" ref_description="SGN-E426402 [STM-46-D13]">
      <seq>catcgccggcgaacaagcgcgaaactaccaaaatctatcgaccggcatcaatcaaccggcaatggagatgacggaaggatcagtgattcatcaagttctcgtcaaattcctcgacggaaagcacaaagccctaaatttcactaccccatccatctccaccctaaccctaaagcacaaaatacagagcctaacttcaattccttctcaccttcagcttctactcccttccaattcattttaccctcttcatgaccaccaaaccctaaatctcgcaaacggtttacccgaaacccgaaatatcggatcgccggaaaatctcacaaatttgtctgcggagaagggcaattttccggttgtggtgaatttgttgcttcggctaaggggtggtaaaggaggtttcggttcattgctgagaggagcggcaaccaaggcagggcagaagaagacgaataattttgacgcgtgtagggatatgagtggtagaaggttgangcatgtgaatgcggaaaagaagctggaagagtggagagcagaagcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98226" stop="99364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98525" g_stop="99064" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E426402" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98525" e_stop="99064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGCCGGCGAAGAAGCGCGACACTACCAAAATCAATCGACCGGCATCAATCAACCGACAATGGAGATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAGAGAAATTTTCCGGTTGTGGTGAATTTGTTGCTTCGGCTAAGGGGTGGTAAAGGAGGCTTTGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGAGGCATGTGAATGCGGAAAAGAAGCTGGAAGAGTGGAGAGCAGAAGCAGA</genome_strand>
        <mrna_strand>CATCGCCGGCGAACAAGCGCGAAACTACCAAAATCTATCGACCGGCATCAATCAACCGGCAATGGAGATGACGGAAGGATCAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCCTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTCTACTCCCTTCCAATTCATTTTACCCTCTTCATGACCACCAAACCCTAAATCTCGCAAACGGTTTACCCGAAACCCGAAATATCGGATCGCCGGAAAATCTCACAAATTTGTCTGCGGAGAAGGGCAATTTTCCGGTTGTGGTGAATTTGTTGCTTCGGCTAAGGGGTGGTAAAGGAGGTTTCGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGANGCATGTGAATGCGGAAAAGAAGCTGGAAGAGTGGAGAGCAGAAGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318011" ref_strand="+" ref_description="SGN-E318011 [cTOA-30-D6]">
      <seq>gccggcgaagaagcgcgacactaccaaaatcaatcgaccggcatcaatcaaccgacaatggagatgactgaaggattagtgattcatcaagttctcgtcaaattcctcgacggaaagcacaaagccttaaatttcactaccccatccatctccaccctaaccctaaagcacaaaatacagagcctaacttcaattccttctcaccttcagcttttactgcctttcaattcgttctaccctcttcaggaccaccaagccctatatctcacaaacgggttgcccgacaaccgaaatatcgggtcgccggaaaatctcacaaatttgtctccggagaagagaattttccggttgtggtgaatttgttgcttcggctaaggggtggtaaaggaggctttggttcattgctgagaggagcggcaaccaaggcagggcagaagaagacgaataattttgacgcgtgtagggatatgagtggtagaaggttgaggcatgtgaatgcggaaaagagctggaagagtggagagcagaagcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98229" stop="99364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98529" g_stop="99064" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E318011" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98529" e_stop="99064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGCGAAGAAGCGCGACACTACCAAAATCAATCGACCGGCATCAATCAACCGACAATGGAGATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAGAGAAATTTTCCGGTTGTGGTGAATTTGTTGCTTCGGCTAAGGGGTGGTAAAGGAGGCTTTGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGAGGCATGTGAATGCGGAAAAGAAGCTGGAAGAGTGGAGAGCAGAAGCAGA</genome_strand>
        <mrna_strand>GCCGGCGAAGAAGCGCGACACTACCAAAATCAATCGACCGGCATCAATCAACCGACAATGGAGATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAGAG-AATTTTCCGGTTGTGGTGAATTTGTTGCTTCGGCTAAGGGGTGGTAAAGGAGGCTTTGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGAGGCATGTGAATGCGGAAAAG-AGCTGGAAGAGTGGAGAGCAGAAGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710975" ref_strand="+" ref_description="SGN-E710975 [FA57CC08]">
      <seq>gaagcgcgacactaccaaaatcaatcgaccggcatcaatcaaccgacaatggagatgactgaaggattagtgattcatcaagttctcgtcaaattcctcgacggaaagcacaaagccttaaatttcactaccccatccatctccaccctaaccctaaagcacaaaatacagagcctaacttcaattccttctcaccttcagcttttactgcctttcaattcgttctaccctcttcaggaccaccaaaccctatatctcacaaacgggttgcccgacaaccgaaatatcgggtcgccggaaaatctcacaaatttgtctccggagaagagaaattttccggttgtggtgaatttgttgcttcggctaaggggtggtaaaggaggctttggttcattgctgagaggagcggcaaccaaggcagggcagaagaagacgaataattttgacgcgtgtagggatatgagtggtagaaggttgaggcatgtgaatgcggaaaagaagctggaagagtggagagcagaagcagaagagaggaaattggagaagatggcggatgagtttcttaagaagaatgcaaaggaagctgcgaagaaaggtaaaaagggtgctactggaagtaacacggataagtatgtgcagaagtatagggaggattctgctaagtgtatggaggaagtggataggtcagttagggagtccctcaagggattcgtgtcatctaaaaggaagggggttgagctcaatgaatcagagtccaaaaagctcaagatatggaagggtaagaggataatgggcgatagtgatagcgaagatctagatgatgatgatgactgtgatgaagaagaggaagagaaagagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98238" stop="100767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98538" g_stop="99310" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="773" r_length="773" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99311" i_stop="100381" i_length="1071">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100382" g_stop="100467" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="862" r_length="89" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E710975" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98538" e_stop="99310"/>
          <exon e_start="100382" e_stop="100467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCGCGACACTACCAAAATCAATCGACCGGCATCAATCAACCGACAATGGAGATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAGAGAAATTTTCCGGTTGTGGTGAATTTGTTGCTTCGGCTAAGGGGTGGTAAAGGAGGCTTTGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGAGGCATGTGAATGCGGAAAAGAAGCTGGAAGAGTGGAGAGCAGAAGCAGAAGAGAGGAAATTGGAGAAGATGGCGGATGAGTTTCTTAAGAAGAATGCAAAGGAAGCTGCGAAGAAAGGTAAAAAGGGTGCTACTGGAAGTAACACGGATAAGTATGTGCAGAAGTATAGGGAGGATTCTGCTAAGTGTATGGAGGAAGTGGATAGGTCAGTTAGGGAGTCCCTCAAGGGATTCGTGTCATCTAAAAGGAAGGGGGTTGAGCTCAATGAATCAGAGTCCAAAAAGCTCAAGATATGGTAAGAACTGTCACCTTTGTATTTCTTGCATTCTTTTTGCCCCTTTTTGTTTAAGAACAACTAATTTGTTTTGAAAAGCCTCAATTTTTAGTATTGTAATGAGGAATGACTATTGAGGATTAGTATTGGAATGAGGAATGACTATTGAGGATTAGTATTGGAATGAGGAATGATCATTGAGGATTTGTGGGTGACTCGACTAGTTTGTGGTTTAGGTCTGCTGTGGTTTTATGTTGAATTGAGTTCCTTTTTGGAAGCCATATCTTGGGTGGAACAATTGAATGTCATCTCTGTTCTTTTTAGGGAGTGAAATAGATTTCAGTTTAATGTGAGTGCTTTGACTCCATCCTTTGTATTTTCCAAAATCAAGTAGTTTTGATAGGCGATACTCTTGTATACCATAGAACCTTGGTTAACGAGTGGAACAGTCTGCTCAGATGTTGAGCAATCAGGGACGGTTATGGGAAATGATCCATTATCAGCATTCTTAAGACCAAGTAGTTGGACAGAAAGGAGGGGAAGTTCTCCCTACCTGGTTTTCCTGATTCTCTCTTTTTATATAATTATTTATTTACTTACTTGATACAGGATGTTGGTTCTCCTGTAGTTGGTTCATAAGAATCCTTAATTAGAATGGGTTTTTGACTTTTCCATCTCCAATTTCGCTCGACCACTATTTACCTAATCAATTTGCTGTTAAAATAAAGTGGTGGAGTGTCACTGTTTTGTTTTTATTATATATATTAAACAATCCAAAGGGGGAGACCTAATGGTCAACGAAATGGTAGGAGAGCCATGATGTGTTTCTCAGGTTCAAATCTGCCTAAGCCTTGTAAATTATATTAAACACTCATAACTGTACTTGTTACCTGCCTGATAGAAAACCTTGTAAACTTTTCAATGATTAAATGATTGAATGCACGTAGTAGAAATTATGTTTTTTCTTTGATGATTCTCCACTTTTTGCACAGTTTTTATACATAATCTATATGTTGAATTTTCTCATTTGTTCAATGAACTTATTATCTTATAAAAAAGGAATTATAACTTACAGTTTGTGATTTTTGGTAGGAAGGGTAAGAGGATAATGGGTGATAGTGATAGCGAAGATCT--A-GATGATGATGACTGTGATGAAGAAGAGGAAGAGAAAGAGAAAT</genome_strand>
        <mrna_strand>GAAGCGCGACACTACCAAAATCAATCGACCGGCATCAATCAACCGACAATGGAGATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCTCTTCAGGACCACCAAACCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAGAGAAATTTTCCGGTTGTGGTGAATTTGTTGCTTCGGCTAAGGGGTGGTAAAGGAGGCTTTGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGAGGCATGTGAATGCGGAAAAGAAGCTGGAAGAGTGGAGAGCAGAAGCAGAAGAGAGGAAATTGGAGAAGATGGCGGATGAGTTTCTTAAGAAGAATGCAAAGGAAGCTGCGAAGAAAGGTAAAAAGGGTGCTACTGGAAGTAACACGGATAAGTATGTGCAGAAGTATAGGGAGGATTCTGCTAAGTGTATGGAGGAAGTGGATAGGTCAGTTAGGGAGTCCCTCAAGGGATTCGTGTCATCTAAAAGGAAGGGGGTTGAGCTCAATGAATCAGAGTCCAAAAAGCTCAAGATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGTAAGAGGATAATGGGCGATAGTGATAGCGAAGATCTAGATGATGATGATGACTGTGATGAAGAAGAGGAAGAGAAAGAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E399880" ref_strand="+" ref_description="SGN-E399880 [cSTC-2-L6]">
      <seq>cgcgaaactaccattaatctatcgaccggcatcaatcaaccggcaatggagatgacggaaggatcagtgattcatcaagttctcgtcaaattcctcgacggaaagcacaaagccctaaatctcactaccccatccatctccaccctaaccctaaagcacaaaatacagagcctaacttcaattccttctcaccttcagcttctactcccttccaattcattttaccctcttcatgaccaccaaaccctaaatctcgcaaacggtttacccgaaacccgaaatatcggatcgccggaaaatctcacaaatttgtctgcggagaatggcaattttccggttgtaggtgaatttgttgcttcggctaatgggtggtaaaggaggtttcggttcattgctgacaggagcggcaaccaatgcagggcagaagaagacgaataaatgtgacgcgtgtagggatatgagtggtagaaggctgaggcatgtgaatgcggaaaagaagctggaagagtggatagcagaagcagaagagaggaaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98256" stop="99378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98542" g_stop="99078" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E399880" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E399880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98542" e_stop="99078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGACACTACCA-AAATCAATCGACCGGCATCAATCAACCGACAATGGAGATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAGAGAAATTTTCCGGTTGT-GGTGAATTTGTTGCTTCGGCTAAGGGGTGGTAAAGGAGGCTTTGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGAGGCATGTGAATGCGGAAAAGAAGCTGGAAGAGTGGAGAGCAGAAGCAGAAGAGAGGAAATTGG</genome_strand>
        <mrna_strand>CGCGAAACTACCATTAATCTATCGACCGGCATCAATCAACCGGCAATGGAGATGACGGAAGGATCAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCCTAAATCTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTCTACTCCCTTCCAATTCATTTTACCCTCTTCATGACCACCAAACCCTAAATCTCGCAAACGGTTTACCCGAAACCCGAAATATCGGATCGCCGGAAAATCTCACAAATTTGTCTGCGGAGAATGGCAATTTTCCGGTTGTAGGTGAATTTGTTGCTTCGGCTAATGGGTGGTAAAGGAGGTTTCGGTTCATTGCTGACAGGAGCGGCAACCAATGCAGGGCAGAAGAAGACGAATAAATGTGACGCGTGTAGGGATATGAGTGGTAGAAGGCTGAGGCATGTGAATGCGGAAAAGAAGCTGGAAGAGTGGATAGCAGAAGCAGAAGAGAGGAAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272961" ref_strand="+" ref_description="SGN-E272961 [cLEM-25-I7]">
      <seq>ccggcatcaatcaaccgacaatggagatgactgcaggattagtgattcatcaagttctcgtcaaattcctccacggaaagcacaaagccttaaatttcactaacccatccatctccaccctaaccctaaagcacaaaatacagagcctgacttcaattccttctcaccttcagcttttactgcctttcaattcaggctaccctcttcaggaccaccaagccctatatctcacaaacgggttgcccgacaaccgaaatatcgggtcgccggaaaatctcacaaatttgtctccggagaagagaaattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98266" stop="99174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98566" g_stop="98874" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E272961" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98566" e_stop="98874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCATCAATCAACCGACAATGGAGATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAGAGAAATTTTC</genome_strand>
        <mrna_strand>CCGGCATCAATCAACCGACAATGGAGATGACTGCAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCCACGGAAAGCACAAAGCCTTAAATTTCACTAACCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTGACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCAGGCTACCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAGAGAAATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358054" ref_strand="+" ref_description="SGN-E358054 [cLHT-32-N15]">
      <seq>gtgacggaaggattagtgattcatcaagttctcgtcaaattcctcgacggaaagcacaaagccctaaatttcactaccccatccatctccaccctaaccctaaagcacaaaatacagagcctgactttaatttcttctcaccttcagcttctactgcctttcaattcgttctaccctcttcatgaccaccaaaccctatatctcacaaacgggttgcccgacaaccgaaatatcgggtgcgccggaaaatctcacaaatttgtctccggagaaaggaaatttcccggctgtggtgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98293" stop="99188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98592" g_stop="98888" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E358054" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98592" e_stop="98888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGT-CGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAGAGAAATTTTCCGGTTGTGGTGAAT</genome_strand>
        <mrna_strand>GTGACGGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCCTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTGACTTTAATTTCTTCTCACCTTCAGCTTCTACTGCCTTTCAATTCGTTCTACCCTCTTCATGACCACCAAACCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTGCGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAAGGAAATTTCCCGGCTGTGGTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559659" ref_strand="+" ref_description="SGN-E559659 [19191]">
      <seq>gattcatcaagttctcgtcaaattcctcgacggaaagcacaaagccctaaatttcactaccccatccatctccaccctaaccctaaagcacaaaatacagagcctaacttcaattccttctcaccttcagcttctactcccttccaattcattttaccctcttcatgaccaccaaaccctaaatctcgcaaacggtttacccgaaacccgaaatatcggatcgccggaaaatctcacaaatttgtctgcggagaagggcaattttccggttgtggtgaatttgttgcttcggctaaggggtggtaaaggaggtttcggttcattgctgagaggagcggcaaccaaggcagggcagaagaagacgaataattttgacgcgtgtagggatatgagtggtagaaggttgaggcatgtgaatgcggaaaagaagctggaagagtggagagcagaagcagaagagaggaaattggagaagatggcggatgagtttcttaagaagaatgcaaaggaagctgcgaagaaaggtaaaaagggtgctactggaagtaacacggataagtatgtgcagaagtatagggaggattctgctaagtgtatggaggaagtggataggtcagttagggagtcccttaagggattagtgtcatctaaaaggaaggggggttgagctcaatgaatcagagtccaaaaagctcaagatatggaagggtaagaggataatgggcgattagtgattagcgaggatctagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98309" stop="100728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98609" g_stop="99310" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99311" i_stop="100381" i_length="1071">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100382" g_stop="100428" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="752" r_length="49" r_score="0.872"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E559659" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98609" e_stop="99310"/>
          <exon e_start="100382" e_stop="100428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAGAGAAATTTTCCGGTTGTGGTGAATTTGTTGCTTCGGCTAAGGGGTGGTAAAGGAGGCTTTGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGAGGCATGTGAATGCGGAAAAGAAGCTGGAAGAGTGGAGAGCAGAAGCAGAAGAGAGGAAATTGGAGAAGATGGCGGATGAGTTTCTTAAGAAGAATGCAAAGGAAGCTGCGAAGAAAGGTAAAAAGGGTGCTACTGGAAGTAACACGGATAAGTATGTGCAGAAGTATAGGGAGGATTCTGCTAAGTGTATGGAGGAAGTGGATAGGTCAGTTAGGGAGTCCCTCAAGGGATTCGTGTCATCTAAAAGGAA-GGGGGTTGAGCTCAATGAATCAGAGTCCAAAAAGCTCAAGATATGGTAAGAACTGTCACCTTTGTATTTCTTGCATTCTTTTTGCCCCTTTTTGTTTAAGAACAACTAATTTGTTTTGAAAAGCCTCAATTTTTAGTATTGTAATGAGGAATGACTATTGAGGATTAGTATTGGAATGAGGAATGACTATTGAGGATTAGTATTGGAATGAGGAATGATCATTGAGGATTTGTGGGTGACTCGACTAGTTTGTGGTTTAGGTCTGCTGTGGTTTTATGTTGAATTGAGTTCCTTTTTGGAAGCCATATCTTGGGTGGAACAATTGAATGTCATCTCTGTTCTTTTTAGGGAGTGAAATAGATTTCAGTTTAATGTGAGTGCTTTGACTCCATCCTTTGTATTTTCCAAAATCAAGTAGTTTTGATAGGCGATACTCTTGTATACCATAGAACCTTGGTTAACGAGTGGAACAGTCTGCTCAGATGTTGAGCAATCAGGGACGGTTATGGGAAATGATCCATTATCAGCATTCTTAAGACCAAGTAGTTGGACAGAAAGGAGGGGAAGTTCTCCCTACCTGGTTTTCCTGATTCTCTCTTTTTATATAATTATTTATTTACTTACTTGATACAGGATGTTGGTTCTCCTGTAGTTGGTTCATAAGAATCCTTAATTAGAATGGGTTTTTGACTTTTCCATCTCCAATTTCGCTCGACCACTATTTACCTAATCAATTTGCTGTTAAAATAAAGTGGTGGAGTGTCACTGTTTTGTTTTTATTATATATATTAAACAATCCAAAGGGGGAGACCTAATGGTCAACGAAATGGTAGGAGAGCCATGATGTGTTTCTCAGGTTCAAATCTGCCTAAGCCTTGTAAATTATATTAAACACTCATAACTGTACTTGTTACCTGCCTGATAGAAAACCTTGTAAACTTTTCAATGATTAAATGATTGAATGCACGTAGTAGAAATTATGTTTTTTCTTTGATGATTCTCCACTTTTTGCACAGTTTTTATACATAATCTATATGTTGAATTTTCTCATTTGTTCAATGAACTTATTATCTTATAAAAAAGGAATTATAACTTACAGTTTGTGATTTTTGGTAGGAAGGGTAAGAGGATAATGGGTGA-TAGTGA-TAGCGAAGATCTAGATG</genome_strand>
        <mrna_strand>GATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCCTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTCTACTCCCTTCCAATTCATTTTACCCTCTTCATGACCACCAAACCCTAAATCTCGCAAACGGTTTACCCGAAACCCGAAATATCGGATCGCCGGAAAATCTCACAAATTTGTCTGCGGAGAAGGGCAATTTTCCGGTTGTGGTGAATTTGTTGCTTCGGCTAAGGGGTGGTAAAGGAGGTTTCGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGAGGCATGTGAATGCGGAAAAGAAGCTGGAAGAGTGGAGAGCAGAAGCAGAAGAGAGGAAATTGGAGAAGATGGCGGATGAGTTTCTTAAGAAGAATGCAAAGGAAGCTGCGAAGAAAGGTAAAAAGGGTGCTACTGGAAGTAACACGGATAAGTATGTGCAGAAGTATAGGGAGGATTCTGCTAAGTGTATGGAGGAAGTGGATAGGTCAGTTAGGGAGTCCCTTAAGGGATTAGTGTCATCTAAAAGGAAGGGGGGTTGAGCTCAATGAATCAGAGTCCAAAAAGCTCAAGATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGTAAGAGGATAATGGGCGATTAGTGATTAGCGAGGATCTAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E403144" ref_strand="+" ref_description="SGN-E403144 [PPC-9-D6]">
      <seq>tgaatttgttgcttcggctaaggggtggtaaaggaggtttcggttcattgctgagaggagcggcaaccaaggcagggcagaagaagacgaataattttgacgcgtgtagggatatgagtggtagaaggttgaggcatgtgaatgcggaaaagaagctggaagagtggagagcagaagcagaagagaggaaattggagaagatggcggatgagtttcttaagaagaatgcaaaggaagctgcgaagaaaggtaaaaagggtgctactggaagtaacacggataagtatgtgcagaagtatagggaggattctgctaagtgtatggaggaagtggataggtcagttagggagtcccttaagggattagtgtcatctaaaaggaagggggttgagctcaatgaatcagagtccaaaaagctcaagatatggaagggtaagaggataatgggcgatagtgatagcgaggatctanatgatgatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98584" stop="100738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98884" g_stop="99310" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99311" i_stop="100381" i_length="1071">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100382" g_stop="100435" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="481" r_length="54" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E403144" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98884" e_stop="99310"/>
          <exon e_start="100382" e_stop="100435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTTGTTGCTTCGGCTAAGGGGTGGTAAAGGAGGCTTTGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGAGGCATGTGAATGCGGAAAAGAAGCTGGAAGAGTGGAGAGCAGAAGCAGAAGAGAGGAAATTGGAGAAGATGGCGGATGAGTTTCTTAAGAAGAATGCAAAGGAAGCTGCGAAGAAAGGTAAAAAGGGTGCTACTGGAAGTAACACGGATAAGTATGTGCAGAAGTATAGGGAGGATTCTGCTAAGTGTATGGAGGAAGTGGATAGGTCAGTTAGGGAGTCCCTCAAGGGATTCGTGTCATCTAAAAGGAAGGGGGTTGAGCTCAATGAATCAGAGTCCAAAAAGCTCAAGATATGGTAAGAACTGTCACCTTTGTATTTCTTGCATTCTTTTTGCCCCTTTTTGTTTAAGAACAACTAATTTGTTTTGAAAAGCCTCAATTTTTAGTATTGTAATGAGGAATGACTATTGAGGATTAGTATTGGAATGAGGAATGACTATTGAGGATTAGTATTGGAATGAGGAATGATCATTGAGGATTTGTGGGTGACTCGACTAGTTTGTGGTTTAGGTCTGCTGTGGTTTTATGTTGAATTGAGTTCCTTTTTGGAAGCCATATCTTGGGTGGAACAATTGAATGTCATCTCTGTTCTTTTTAGGGAGTGAAATAGATTTCAGTTTAATGTGAGTGCTTTGACTCCATCCTTTGTATTTTCCAAAATCAAGTAGTTTTGATAGGCGATACTCTTGTATACCATAGAACCTTGGTTAACGAGTGGAACAGTCTGCTCAGATGTTGAGCAATCAGGGACGGTTATGGGAAATGATCCATTATCAGCATTCTTAAGACCAAGTAGTTGGACAGAAAGGAGGGGAAGTTCTCCCTACCTGGTTTTCCTGATTCTCTCTTTTTATATAATTATTTATTTACTTACTTGATACAGGATGTTGGTTCTCCTGTAGTTGGTTCATAAGAATCCTTAATTAGAATGGGTTTTTGACTTTTCCATCTCCAATTTCGCTCGACCACTATTTACCTAATCAATTTGCTGTTAAAATAAAGTGGTGGAGTGTCACTGTTTTGTTTTTATTATATATATTAAACAATCCAAAGGGGGAGACCTAATGGTCAACGAAATGGTAGGAGAGCCATGATGTGTTTCTCAGGTTCAAATCTGCCTAAGCCTTGTAAATTATATTAAACACTCATAACTGTACTTGTTACCTGCCTGATAGAAAACCTTGTAAACTTTTCAATGATTAAATGATTGAATGCACGTAGTAGAAATTATGTTTTTTCTTTGATGATTCTCCACTTTTTGCACAGTTTTTATACATAATCTATATGTTGAATTTTCTCATTTGTTCAATGAACTTATTATCTTATAAAAAAGGAATTATAACTTACAGTTTGTGATTTTTGGTAGGAAGGGTAAGAGGATAATGGGTGATAGTGATAGCGAAGATCTAGATGATGATGA</genome_strand>
        <mrna_strand>TGAATTTGTTGCTTCGGCTAAGGGGTGGTAAAGGAGGTTTCGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGAGGCATGTGAATGCGGAAAAGAAGCTGGAAGAGTGGAGAGCAGAAGCAGAAGAGAGGAAATTGGAGAAGATGGCGGATGAGTTTCTTAAGAAGAATGCAAAGGAAGCTGCGAAGAAAGGTAAAAAGGGTGCTACTGGAAGTAACACGGATAAGTATGTGCAGAAGTATAGGGAGGATTCTGCTAAGTGTATGGAGGAAGTGGATAGGTCAGTTAGGGAGTCCCTTAAGGGATTAGTGTCATCTAAAAGGAAGGGGGTTGAGCTCAATGAATCAGAGTCCAAAAAGCTCAAGATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGTAAGAGGATAATGGGCGATAGTGATAGCGAGGATCTANATGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267207" ref_strand="+" ref_description="SGN-E267207 [cLEI-4-K8]">
      <seq>ggaggctttggttcattgctgagaggagcggcaaccaaggcagggcagaagaagacgaataattttgacgcgtgtagggatatgagtggtagaaggttgaggcatgtgaatgcggaaaagaagctggaagagtggagagcagaagcagaagagaggaaattggagaagatggcggatgagtttcttaagaagaatgcaaaggaagctgcgaagaaaggtaaaaagggtgctactggaagtaacacggataagtatgtgcagaagtatagggaggattctgctaagtgtatggaggaagtggataggtcagttagggagtccctcaagggattcgtgtcatctaaaaggaagggggttgagctcaatgaatcagagtccaaaaagctcaagatatggaagggtaagaggataatgggtgatagtgatagcgaagatctagatgatgatgactgtgatgaagaagaggaagagaaagagaaatccatcgtcatagataatgggggcaattcagactccaatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98616" stop="100809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98916" g_stop="99310" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99311" i_stop="100381" i_length="1071">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100382" g_stop="100509" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="523" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E267207" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98916" e_stop="99310"/>
          <exon e_start="100382" e_stop="100509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGCTTTGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGAGGCATGTGAATGCGGAAAAGAAGCTGGAAGAGTGGAGAGCAGAAGCAGAAGAGAGGAAATTGGAGAAGATGGCGGATGAGTTTCTTAAGAAGAATGCAAAGGAAGCTGCGAAGAAAGGTAAAAAGGGTGCTACTGGAAGTAACACGGATAAGTATGTGCAGAAGTATAGGGAGGATTCTGCTAAGTGTATGGAGGAAGTGGATAGGTCAGTTAGGGAGTCCCTCAAGGGATTCGTGTCATCTAAAAGGAAGGGGGTTGAGCTCAATGAATCAGAGTCCAAAAAGCTCAAGATATGGTAAGAACTGTCACCTTTGTATTTCTTGCATTCTTTTTGCCCCTTTTTGTTTAAGAACAACTAATTTGTTTTGAAAAGCCTCAATTTTTAGTATTGTAATGAGGAATGACTATTGAGGATTAGTATTGGAATGAGGAATGACTATTGAGGATTAGTATTGGAATGAGGAATGATCATTGAGGATTTGTGGGTGACTCGACTAGTTTGTGGTTTAGGTCTGCTGTGGTTTTATGTTGAATTGAGTTCCTTTTTGGAAGCCATATCTTGGGTGGAACAATTGAATGTCATCTCTGTTCTTTTTAGGGAGTGAAATAGATTTCAGTTTAATGTGAGTGCTTTGACTCCATCCTTTGTATTTTCCAAAATCAAGTAGTTTTGATAGGCGATACTCTTGTATACCATAGAACCTTGGTTAACGAGTGGAACAGTCTGCTCAGATGTTGAGCAATCAGGGACGGTTATGGGAAATGATCCATTATCAGCATTCTTAAGACCAAGTAGTTGGACAGAAAGGAGGGGAAGTTCTCCCTACCTGGTTTTCCTGATTCTCTCTTTTTATATAATTATTTATTTACTTACTTGATACAGGATGTTGGTTCTCCTGTAGTTGGTTCATAAGAATCCTTAATTAGAATGGGTTTTTGACTTTTCCATCTCCAATTTCGCTCGACCACTATTTACCTAATCAATTTGCTGTTAAAATAAAGTGGTGGAGTGTCACTGTTTTGTTTTTATTATATATATTAAACAATCCAAAGGGGGAGACCTAATGGTCAACGAAATGGTAGGAGAGCCATGATGTGTTTCTCAGGTTCAAATCTGCCTAAGCCTTGTAAATTATATTAAACACTCATAACTGTACTTGTTACCTGCCTGATAGAAAACCTTGTAAACTTTTCAATGATTAAATGATTGAATGCACGTAGTAGAAATTATGTTTTTTCTTTGATGATTCTCCACTTTTTGCACAGTTTTTATACATAATCTATATGTTGAATTTTCTCATTTGTTCAATGAACTTATTATCTTATAAAAAAGGAATTATAACTTACAGTTTGTGATTTTTGGTAGGAAGGGTAAGAGGATAATGGGTGATAGTGATAGCGAAGATCTAGATGATGATGACTGTGATGAAGAAGAGGAAGAGAAAGAGAAATCCATCGTCATAGATAATGGGGGCAATTCAGACTCCAATGGAG</genome_strand>
        <mrna_strand>GGAGGCTTTGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGAGGCATGTGAATGCGGAAAAGAAGCTGGAAGAGTGGAGAGCAGAAGCAGAAGAGAGGAAATTGGAGAAGATGGCGGATGAGTTTCTTAAGAAGAATGCAAAGGAAGCTGCGAAGAAAGGTAAAAAGGGTGCTACTGGAAGTAACACGGATAAGTATGTGCAGAAGTATAGGGAGGATTCTGCTAAGTGTATGGAGGAAGTGGATAGGTCAGTTAGGGAGTCCCTCAAGGGATTCGTGTCATCTAAAAGGAAGGGGGTTGAGCTCAATGAATCAGAGTCCAAAAAGCTCAAGATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGTAAGAGGATAATGGGTGATAGTGATAGCGAAGATCTAGATGATGATGACTGTGATGAAGAAGAGGAAGAGAAAGAGAAATCCATCGTCATAGATAATGGGGGCAATTCAGACTCCAATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241139" ref_strand="+" ref_description="SGN-E241139 [cLED-26-J9]">
      <seq>gcagaagcagaagagaggaaattggagaagatggcggatgagtttcttaagaagaatgcaaaggaagctgcgaagaaaggtaaaaagggtgctactggaagtaacacggataagtatgtgcagaagtatagggaggattctgctaagtgtatggaggaagtggataggtcagttagggagtccctcaagggattcgtgtcatctaaaaggaagggggttgagctcaatgaatcagagtccaaaaagctcaagatatggaagggtaagaggataatgggtgatagtgatagcgaagatctagatgatgatgactgtgatgaagaagaggaagagaaagagaaatccatcgtcatagataatgggggcaattcagactccaatggagaagcagagggaagtttggattctgtaactggcagaaaagttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98754" stop="100854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99054" g_stop="99310" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99311" i_stop="100381" i_length="1071">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100382" g_stop="100554" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="430" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E241139" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99054" e_stop="99310"/>
          <exon e_start="100382" e_stop="100554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAGCAGAAGAGAGGAAATTGGAGAAGATGGCGGATGAGTTTCTTAAGAAGAATGCAAAGGAAGCTGCGAAGAAAGGTAAAAAGGGTGCTACTGGAAGTAACACGGATAAGTATGTGCAGAAGTATAGGGAGGATTCTGCTAAGTGTATGGAGGAAGTGGATAGGTCAGTTAGGGAGTCCCTCAAGGGATTCGTGTCATCTAAAAGGAAGGGGGTTGAGCTCAATGAATCAGAGTCCAAAAAGCTCAAGATATGGTAAGAACTGTCACCTTTGTATTTCTTGCATTCTTTTTGCCCCTTTTTGTTTAAGAACAACTAATTTGTTTTGAAAAGCCTCAATTTTTAGTATTGTAATGAGGAATGACTATTGAGGATTAGTATTGGAATGAGGAATGACTATTGAGGATTAGTATTGGAATGAGGAATGATCATTGAGGATTTGTGGGTGACTCGACTAGTTTGTGGTTTAGGTCTGCTGTGGTTTTATGTTGAATTGAGTTCCTTTTTGGAAGCCATATCTTGGGTGGAACAATTGAATGTCATCTCTGTTCTTTTTAGGGAGTGAAATAGATTTCAGTTTAATGTGAGTGCTTTGACTCCATCCTTTGTATTTTCCAAAATCAAGTAGTTTTGATAGGCGATACTCTTGTATACCATAGAACCTTGGTTAACGAGTGGAACAGTCTGCTCAGATGTTGAGCAATCAGGGACGGTTATGGGAAATGATCCATTATCAGCATTCTTAAGACCAAGTAGTTGGACAGAAAGGAGGGGAAGTTCTCCCTACCTGGTTTTCCTGATTCTCTCTTTTTATATAATTATTTATTTACTTACTTGATACAGGATGTTGGTTCTCCTGTAGTTGGTTCATAAGAATCCTTAATTAGAATGGGTTTTTGACTTTTCCATCTCCAATTTCGCTCGACCACTATTTACCTAATCAATTTGCTGTTAAAATAAAGTGGTGGAGTGTCACTGTTTTGTTTTTATTATATATATTAAACAATCCAAAGGGGGAGACCTAATGGTCAACGAAATGGTAGGAGAGCCATGATGTGTTTCTCAGGTTCAAATCTGCCTAAGCCTTGTAAATTATATTAAACACTCATAACTGTACTTGTTACCTGCCTGATAGAAAACCTTGTAAACTTTTCAATGATTAAATGATTGAATGCACGTAGTAGAAATTATGTTTTTTCTTTGATGATTCTCCACTTTTTGCACAGTTTTTATACATAATCTATATGTTGAATTTTCTCATTTGTTCAATGAACTTATTATCTTATAAAAAAGGAATTATAACTTACAGTTTGTGATTTTTGGTAGGAAGGGTAAGAGGATAATGGGTGATAGTGATAGCGAAGATCTAGATGATGATGACTGTGATGAAGAAGAGGAAGAGAAAGAGAAATCCATCGTCATAGATAATGGGGGCAATTCAGACTCCAATGGAGAAGCAGAGGGAAGTTTGGATTCTGTAACTGGCAGAAAAGTTGATG</genome_strand>
        <mrna_strand>GCAGAAGCAGAAGAGAGGAAATTGGAGAAGATGGCGGATGAGTTTCTTAAGAAGAATGCAAAGGAAGCTGCGAAGAAAGGTAAAAAGGGTGCTACTGGAAGTAACACGGATAAGTATGTGCAGAAGTATAGGGAGGATTCTGCTAAGTGTATGGAGGAAGTGGATAGGTCAGTTAGGGAGTCCCTCAAGGGATTCGTGTCATCTAAAAGGAAGGGGGTTGAGCTCAATGAATCAGAGTCCAAAAAGCTCAAGATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGTAAGAGGATAATGGGTGATAGTGATAGCGAAGATCTAGATGATGATGACTGTGATGAAGAAGAGGAAGAGAAAGAGAAATCCATCGTCATAGATAATGGGGGCAATTCAGACTCCAATGGAGAAGCAGAGGGAAGTTTGGATTCTGTAACTGGCAGAAAAGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285860" ref_strand="+" ref_description="SGN-E285860 [cLES-5-J20]">
      <seq>aagaatgcaaaggaagctgcgaagaaaggtaaaaagggtgctactggaagtaacacggataagtatgtgcagaagtatagggaggattctgctaagtgtatggaggaagtggataggtcagttagggagtccctcaagggattcgtgtcatctaaaaggaagggggttgagctcaatgaatcagagtccaaaaagctcaagatatggaagggtaagaggataatgggtgatagtgatagcgaagatctagatgatgatgactgtgatgaagaagaggaagagaaagagaaatccatcgtcatagataatgggggcaattcagactccaatggagaagcagagggaagtttggattctgtaactggcagaaaagttgatggtggtgcatctgagagtggctccgaggaagaaaaggatactcttcttctgaagaatcttgaacctggtaaagatgtcaatgtaaatgcagttcaccatgaaagtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98805" stop="100962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99105" g_stop="99310" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99311" i_stop="100381" i_length="1071">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100382" g_stop="100662" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="487" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E285860" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99105" e_stop="99310"/>
          <exon e_start="100382" e_stop="100662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGCAAAGGAAGCTGCGAAGAAAGGTAAAAAGGGTGCTACTGGAAGTAACACGGATAAGTATGTGCAGAAGTATAGGGAGGATTCTGCTAAGTGTATGGAGGAAGTGGATAGGTCAGTTAGGGAGTCCCTCAAGGGATTCGTGTCATCTAAAAGGAAGGGGGTTGAGCTCAATGAATCAGAGTCCAAAAAGCTCAAGATATGGTAAGAACTGTCACCTTTGTATTTCTTGCATTCTTTTTGCCCCTTTTTGTTTAAGAACAACTAATTTGTTTTGAAAAGCCTCAATTTTTAGTATTGTAATGAGGAATGACTATTGAGGATTAGTATTGGAATGAGGAATGACTATTGAGGATTAGTATTGGAATGAGGAATGATCATTGAGGATTTGTGGGTGACTCGACTAGTTTGTGGTTTAGGTCTGCTGTGGTTTTATGTTGAATTGAGTTCCTTTTTGGAAGCCATATCTTGGGTGGAACAATTGAATGTCATCTCTGTTCTTTTTAGGGAGTGAAATAGATTTCAGTTTAATGTGAGTGCTTTGACTCCATCCTTTGTATTTTCCAAAATCAAGTAGTTTTGATAGGCGATACTCTTGTATACCATAGAACCTTGGTTAACGAGTGGAACAGTCTGCTCAGATGTTGAGCAATCAGGGACGGTTATGGGAAATGATCCATTATCAGCATTCTTAAGACCAAGTAGTTGGACAGAAAGGAGGGGAAGTTCTCCCTACCTGGTTTTCCTGATTCTCTCTTTTTATATAATTATTTATTTACTTACTTGATACAGGATGTTGGTTCTCCTGTAGTTGGTTCATAAGAATCCTTAATTAGAATGGGTTTTTGACTTTTCCATCTCCAATTTCGCTCGACCACTATTTACCTAATCAATTTGCTGTTAAAATAAAGTGGTGGAGTGTCACTGTTTTGTTTTTATTATATATATTAAACAATCCAAAGGGGGAGACCTAATGGTCAACGAAATGGTAGGAGAGCCATGATGTGTTTCTCAGGTTCAAATCTGCCTAAGCCTTGTAAATTATATTAAACACTCATAACTGTACTTGTTACCTGCCTGATAGAAAACCTTGTAAACTTTTCAATGATTAAATGATTGAATGCACGTAGTAGAAATTATGTTTTTTCTTTGATGATTCTCCACTTTTTGCACAGTTTTTATACATAATCTATATGTTGAATTTTCTCATTTGTTCAATGAACTTATTATCTTATAAAAAAGGAATTATAACTTACAGTTTGTGATTTTTGGTAGGAAGGGTAAGAGGATAATGGGTGATAGTGATAGCGAAGATCTAGATGATGATGACTGTGATGAAGAAGAGGAAGAGAAAGAGAAATCCATCGTCATAGATAATGGGGGCAATTCAGACTCCAATGGAGAAGCAGAGGGAAGTTTGGATTCTGTAACTGGCAGAAAAGTTGATGGTGGTGCATCTGAGAGTGGCTCCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAACCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAAGTGAAA</genome_strand>
        <mrna_strand>AAGAATGCAAAGGAAGCTGCGAAGAAAGGTAAAAAGGGTGCTACTGGAAGTAACACGGATAAGTATGTGCAGAAGTATAGGGAGGATTCTGCTAAGTGTATGGAGGAAGTGGATAGGTCAGTTAGGGAGTCCCTCAAGGGATTCGTGTCATCTAAAAGGAAGGGGGTTGAGCTCAATGAATCAGAGTCCAAAAAGCTCAAGATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGTAAGAGGATAATGGGTGATAGTGATAGCGAAGATCTAGATGATGATGACTGTGATGAAGAAGAGGAAGAGAAAGAGAAATCCATCGTCATAGATAATGGGGGCAATTCAGACTCCAATGGAGAAGCAGAGGGAAGTTTGGATTCTGTAACTGGCAGAAAAGTTGATGGTGGTGCATCTGAGAGTGGCTCCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAACCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAAGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E616741" ref_strand="-" ref_description="SGN-E616741 [90211]">
      <seq>ggattcgtgtcatctaaaggaaggggttgaactcaatgaatcagagtccaaaaagctcaagattatggaagggtaagaggataatgggcgatagtgataacgaggatctagatgatgatgatggacagtgacgaagaagaggaagagaaagataaatccattgtcatagataatgggggcaattcagactccaatggagaagcagagggaagtttggattctgtgactggcagaaaagttgatggtggtgcgtctgagagtggctccgaggaagaaaaggatactcttcttctgaagaatcttgaatctggtaaagatgtcaatgtaaatgcagttcaccatgaaggtgaaagtctgtcctcactcactccagacagtccagaaaatactgggcagagtgttgttgcctctagtgttggcactgatattgcatctgcgattgaaagtattcaaacagaaaaagaaggttctggtacttctgagccaattgttgtggaggcgagctccggtgtgaaagaagacaatgctgtagaacccagtaataatctaagccctatatcagaacctcaggaagatgcagtctcaaaggattcagacttagaaaaacctttgaattttgagcaatttagttcagcggcggaactggaggtcctcggcatggagaggttaaaatcagaacttcaagtgcgtgggttgaagtgtggaggcaccctgcaggaacgtgcagccaggcttttcttactcaaaactacacctctggagatgcttccaaagaagttgcttgctaagaagtaattttgtgctcgtttgttttgctattgtagctggttgtaattgtaacctcatgttttgagtgtcagcttattctctatttgacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98943" stop="107981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99243" g_stop="99310" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99311" i_stop="100381" i_length="1071">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100382" g_stop="100958" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="648" r_length="581" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100959" i_stop="102169" i_length="1211">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102170" g_stop="102383" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="862" r_length="214" r_score="0.925"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102384" i_stop="102455" i_length="72">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102456" g_stop="102482" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="863" r_stop="887" r_length="25" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E616741" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616741" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="99243" e_stop="99310"/>
          <exon e_start="100382" e_stop="100958"/>
          <exon e_start="102170" e_stop="102383"/>
          <exon e_start="102456" e_stop="102482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCGTGTCATCTAAAAGGAAGGGGGTTGAGCTCAATGAATCAGAGTCCAAAAAGCTCAAGA-TATGGTAAGAACTGTCACCTTTGTATTTCTTGCATTCTTTTTGCCCCTTTTTGTTTAAGAACAACTAATTTGTTTTGAAAAGCCTCAATTTTTAGTATTGTAATGAGGAATGACTATTGAGGATTAGTATTGGAATGAGGAATGACTATTGAGGATTAGTATTGGAATGAGGAATGATCATTGAGGATTTGTGGGTGACTCGACTAGTTTGTGGTTTAGGTCTGCTGTGGTTTTATGTTGAATTGAGTTCCTTTTTGGAAGCCATATCTTGGGTGGAACAATTGAATGTCATCTCTGTTCTTTTTAGGGAGTGAAATAGATTTCAGTTTAATGTGAGTGCTTTGACTCCATCCTTTGTATTTTCCAAAATCAAGTAGTTTTGATAGGCGATACTCTTGTATACCATAGAACCTTGGTTAACGAGTGGAACAGTCTGCTCAGATGTTGAGCAATCAGGGACGGTTATGGGAAATGATCCATTATCAGCATTCTTAAGACCAAGTAGTTGGACAGAAAGGAGGGGAAGTTCTCCCTACCTGGTTTTCCTGATTCTCTCTTTTTATATAATTATTTATTTACTTACTTGATACAGGATGTTGGTTCTCCTGTAGTTGGTTCATAAGAATCCTTAATTAGAATGGGTTTTTGACTTTTCCATCTCCAATTTCGCTCGACCACTATTTACCTAATCAATTTGCTGTTAAAATAAAGTGGTGGAGTGTCACTGTTTTGTTTTTATTATATATATTAAACAATCCAAAGGGGGAGACCTAATGGTCAACGAAATGGTAGGAGAGCCATGATGTGTTTCTCAGGTTCAAATCTGCCTAAGCCTTGTAAATTATATTAAACACTCATAACTGTACTTGTTACCTGCCTGATAGAAAACCTTGTAAACTTTTCAATGATTAAATGATTGAATGCACGTAGTAGAAATTATGTTTTTTCTTTGATGATTCTCCACTTTTTGCACAGTTTTTATACATAATCTATATGTTGAATTTTCTCATTTGTTCAATGAACTTATTATCTTATAAAAAAGGAATTATAACTTACAGTTTGTGATTTTTGGTAGGAAGGGTAAGAGGATAATGGGTGATAGTGATAGCGAAGATCT--A-GATGATGAT-GACTGTGATGAAGAAGAGGAAGAGAAAGAGAAATCCATCGTCATAGATAATGGGGGCAATTCAGACTCCAATGGAGAAGCAGAGGGAAGTTTGGATTCTGTAACTGGCAGAAAAGTTGATGGTGGTGCATCTGAGAGTGGCTCCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAACCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAAGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGCTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGTGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTGCTTCTGAGCCAATTGTTGTGGAGGGGAGCTCTGGTGTGAAAGAAAACAATGCTGCAAAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGAGTTAGAAAAACCTTTGAATTTTGAGCAGTTTAGTTCAGCAGCGGAACTGGAGGTATGCATCATCTCTCATATAGTATAGTTGATCTCCATTGCTTACTACATCTGTGTTGTTCAATATGTATCATTAAAGGCTTCCTCTGCTTGCTGTAGCAATTTGTTTTCAACTGGTTGTTAATCAAAATTAAGATTACAATGCTTCACCTTTTCACTTTGGCTAATTTACCCCCCCCCCCCCCCCCCCCCCGCGTGTGTCCCTTTCAGTTGTGGATGGCTCAAGATTGTTACTTGTTTACATGGCCTTCCCTGTGAGATCAATAGCAGTTAATAAATAATTATTTTGGTGTGTGTGTGTGTGTGGGCTAGTGGCTAAGTAGGAGAGTCCCAACACTTCTATAGCCTGCAGGCTGCACTGCAGGTAAACGTAACCTGTTTACAGTGAAACCCTTAAGAGGGTTAATAAACACCTCATCTGTCATGGTCCATACTTTTTTAATCATCTTAGCTGATGTCTGAGTTTAATTGTTATTTTTCTTCTGTTCTTGCATAACGAATGACATTGCTGCTTTTCTAATTTGTGTTTTAATGTCGATTCAGTGATATCGCTTCAATTACTAGTATAAAACCTCTTTTTGGCTTCAATGGGATGTTAACAAAGTTGCTGGAAAATGATTCTGAAGAAAATAAAAATAAAAAAAGGCAGGGAAGTCATTCTCTAGTATTCTTTGTTTGAAAAGAATTGGAGTTTAAATGAGAACAAGACCATTTCTTTTTCCTTACATTTGCAGCACTTCGGAGGAAATCTTTCCTGGGTCCAACAACTTTATTTTTTACTAAATGCATCAAAAAGTGTGAATAATTTACTTTCTGGTACTTGGTTTTCCATTTCCCCACAATCAAATGGTACCTATGTGTCCTTACTGCGAGTTAAAATCGGTTTTAGGGGGGAAAGGATGTGTGTCTTCTGTTTGTTGGTCTTCCGTTCTTGTTGGAACTGTGGCATTCGGGCATTGCTTGGTTCATCTGCCACTGCTAAGTTTGTACTCTTCGACTCTGATAACAGTATGGAAGTATGACATGAATAATTTTTTTTATATATATGCTATTTTAACTGGGACTTTATACTATGATTTTTGCATTGATTGTTGTGTGGTCTCTATGTTTTCCTCATCACCCGTAAGCTTGTGTTACTGTTCATTGGTGAATGCAGTAGTGTTTGTTACCAATAGTTCCTAGCTAAATGTATTTTTGATTTGGTTGTGTTAGGTACTCGGCATGGAGAAGTTAAAGTCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGAGGCACCCTGCAAGAACGTGCAGCCAGGCTTTTCTTACTCAAAACCACACCTTTGGAAATGCTTCCAAAGAAGTTGCTTGCTAAGAAGTAATTTTGTGCTCGTCTGTTTTGCTATTGTAGCTGGTTGTAATTGTAACCTCATGTTCAGCTTATTCTCTGTTTTACTTGCTATGTAAATATGCGTGTGCATTTTTCAATATATTTCAACAACTTCCAAGGACGAACAGTAGTAATTCACTTTTTTAGAGTAATAAAAG</genome_strand>
        <mrna_strand>GGATTCGTGTCATCTAA-AGGAA-GGGGTTGAACTCAATGAATCAGAGTCCAAAAAGCTCAAGATTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGTAAGAGGATAATGGGCGATAGTGATAACGAGGATCTAGATGATGATGATGGACAGTGACGAAGAAGAGGAAGAGAAAGATAAATCCATTGTCATAGATAATGGGGGCAATTCAGACTCCAATGGAGAAGCAGAGGGAAGTTTGGATTCTGTGACTGGCAGAAAAGTTGATGGTGGTGCGTCTGAGAGTGGCTCCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAATCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAGGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGTTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGCGATTGAAAGTATTCAAACAGAAAAAGAAGGTTCTGGTACTTCTGAGCCAATTGTTGTGGAGGCGAGCTCCGGTGTGAAAGAAGACAATGCTGTAGAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGACTTAGAAAAACCTTTGAATTTTGAGCAATTTAGTTCAGCGGCGGAACTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCGGCATGGAGAGGTTAAAATCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGAGGCACCCTGCAGGAACGTGCAGCCAGGCTTTTCTTACTCAAAACTACACCTCTGGAGATGCTTCCAAAGAAGTTGCTTGCTAAGAAGTAATTTTGTGCTCGTTTGTTTTGCTATTGTAGCTGGTTGTAATTGTAACCTCATGTTTTGAGTGTCAGCT........................................................................T-ATTCTCTATTTGA-CTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E599888" ref_strand="+" ref_description="SGN-E599888 [52886]">
      <seq>gggggttgaactcaatgaatcagagtccaaaaagctcaagatatggaagggtaagaggataatgggcgatagtgatagcgaggatctagatgatgatgatgacagtgacgaagaagaggaagagaaagataaatccattgtcatagataatgggggcaattcagactccaatggagaagcagagggaagtttggattctgtgactggcagaaaagttgatggtggtgcgtctgagagtggctccgaggaagaaaaggatactcttcttctgaagaatcttgaatctggtaaagatgtcaatgtaaatgcagttcaccatgaaggtgaaagtctgtcctcactcactccagacagtccagaaaatactgggcagagtgttgttgcctctagtgttggcactgatattgcatctgcgattgaaagtattcaaacagaaaaagaaggttctggtacttctgagccaattgttgtggaggcgagctccggtgtgaaagaagacaatgctgtagaacccagtaataatctaagccctatatcagaacctcaggaagatgcagtctcaaaggattcagacttagaaaaagctttgaattttgagcaatttagttcagcggcggaactggaggtcctcggcatggagaggttaaaatcagaacttcaagtgcgtgggttgaagtgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98966" stop="102526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99266" g_stop="99310" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99311" i_stop="100381" i_length="1071">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100382" g_stop="100958" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="625" r_length="580" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100959" i_stop="102169" i_length="1211">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102170" g_stop="102226" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="682" r_length="57" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E599888" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99266" e_stop="99310"/>
          <exon e_start="100382" e_stop="100958"/>
          <exon e_start="102170" e_stop="102226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGTTGAGCTCAATGAATCAGAGTCCAAAAAGCTCAAGATATGGTAAGAACTGTCACCTTTGTATTTCTTGCATTCTTTTTGCCCCTTTTTGTTTAAGAACAACTAATTTGTTTTGAAAAGCCTCAATTTTTAGTATTGTAATGAGGAATGACTATTGAGGATTAGTATTGGAATGAGGAATGACTATTGAGGATTAGTATTGGAATGAGGAATGATCATTGAGGATTTGTGGGTGACTCGACTAGTTTGTGGTTTAGGTCTGCTGTGGTTTTATGTTGAATTGAGTTCCTTTTTGGAAGCCATATCTTGGGTGGAACAATTGAATGTCATCTCTGTTCTTTTTAGGGAGTGAAATAGATTTCAGTTTAATGTGAGTGCTTTGACTCCATCCTTTGTATTTTCCAAAATCAAGTAGTTTTGATAGGCGATACTCTTGTATACCATAGAACCTTGGTTAACGAGTGGAACAGTCTGCTCAGATGTTGAGCAATCAGGGACGGTTATGGGAAATGATCCATTATCAGCATTCTTAAGACCAAGTAGTTGGACAGAAAGGAGGGGAAGTTCTCCCTACCTGGTTTTCCTGATTCTCTCTTTTTATATAATTATTTATTTACTTACTTGATACAGGATGTTGGTTCTCCTGTAGTTGGTTCATAAGAATCCTTAATTAGAATGGGTTTTTGACTTTTCCATCTCCAATTTCGCTCGACCACTATTTACCTAATCAATTTGCTGTTAAAATAAAGTGGTGGAGTGTCACTGTTTTGTTTTTATTATATATATTAAACAATCCAAAGGGGGAGACCTAATGGTCAACGAAATGGTAGGAGAGCCATGATGTGTTTCTCAGGTTCAAATCTGCCTAAGCCTTGTAAATTATATTAAACACTCATAACTGTACTTGTTACCTGCCTGATAGAAAACCTTGTAAACTTTTCAATGATTAAATGATTGAATGCACGTAGTAGAAATTATGTTTTTTCTTTGATGATTCTCCACTTTTTGCACAGTTTTTATACATAATCTATATGTTGAATTTTCTCATTTGTTCAATGAACTTATTATCTTATAAAAAAGGAATTATAACTTACAGTTTGTGATTTTTGGTAGGAAGGGTAAGAGGATAATGGGTGATAGTGATAGCGAAGATCTAGATGAT---GATGACTGTGATGAAGAAGAGGAAGAGAAAGAGAAATCCATCGTCATAGATAATGGGGGCAATTCAGACTCCAATGGAGAAGCAGAGGGAAGTTTGGATTCTGTAACTGGCAGAAAAGTTGATGGTGGTGCATCTGAGAGTGGCTCCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAACCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAAGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGCTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGTGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTGCTTCTGAGCCAATTGTTGTGGAGGGGAGCTCTGGTGTGAAAGAAAACAATGCTGCAAAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGAGTTAGAAAAACCTTTGAATTTTGAGCAGTTTAGTTCAGCAGCGGAACTGGAGGTATGCATCATCTCTCATATAGTATAGTTGATCTCCATTGCTTACTACATCTGTGTTGTTCAATATGTATCATTAAAGGCTTCCTCTGCTTGCTGTAGCAATTTGTTTTCAACTGGTTGTTAATCAAAATTAAGATTACAATGCTTCACCTTTTCACTTTGGCTAATTTACCCCCCCCCCCCCCCCCCCCCCGCGTGTGTCCCTTTCAGTTGTGGATGGCTCAAGATTGTTACTTGTTTACATGGCCTTCCCTGTGAGATCAATAGCAGTTAATAAATAATTATTTTGGTGTGTGTGTGTGTGTGGGCTAGTGGCTAAGTAGGAGAGTCCCAACACTTCTATAGCCTGCAGGCTGCACTGCAGGTAAACGTAACCTGTTTACAGTGAAACCCTTAAGAGGGTTAATAAACACCTCATCTGTCATGGTCCATACTTTTTTAATCATCTTAGCTGATGTCTGAGTTTAATTGTTATTTTTCTTCTGTTCTTGCATAACGAATGACATTGCTGCTTTTCTAATTTGTGTTTTAATGTCGATTCAGTGATATCGCTTCAATTACTAGTATAAAACCTCTTTTTGGCTTCAATGGGATGTTAACAAAGTTGCTGGAAAATGATTCTGAAGAAAATAAAAATAAAAAAAGGCAGGGAAGTCATTCTCTAGTATTCTTTGTTTGAAAAGAATTGGAGTTTAAATGAGAACAAGACCATTTCTTTTTCCTTACATTTGCAGCACTTCGGAGGAAATCTTTCCTGGGTCCAACAACTTTATTTTTTACTAAATGCATCAAAAAGTGTGAATAATTTACTTTCTGGTACTTGGTTTTCCATTTCCCCACAATCAAATGGTACCTATGTGTCCTTACTGCGAGTTAAAATCGGTTTTAGGGGGGAAAGGATGTGTGTCTTCTGTTTGTTGGTCTTCCGTTCTTGTTGGAACTGTGGCATTCGGGCATTGCTTGGTTCATCTGCCACTGCTAAGTTTGTACTCTTCGACTCTGATAACAGTATGGAAGTATGACATGAATAATTTTTTTTATATATATGCTATTTTAACTGGGACTTTATACTATGATTTTTGCATTGATTGTTGTGTGGTCTCTATGTTTTCCTCATCACCCGTAAGCTTGTGTTACTGTTCATTGGTGAATGCAGTAGTGTTTGTTACCAATAGTTCCTAGCTAAATGTATTTTTGATTTGGTTGTGTTAGGTACTCGGCATGGAGAAGTTAAAGTCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGA</genome_strand>
        <mrna_strand>GGGGGTTGAACTCAATGAATCAGAGTCCAAAAAGCTCAAGATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGTAAGAGGATAATGGGCGATAGTGATAGCGAGGATCTAGATGATGATGATGACAGTGACGAAGAAGAGGAAGAGAAAGATAAATCCATTGTCATAGATAATGGGGGCAATTCAGACTCCAATGGAGAAGCAGAGGGAAGTTTGGATTCTGTGACTGGCAGAAAAGTTGATGGTGGTGCGTCTGAGAGTGGCTCCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAATCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAGGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGTTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGCGATTGAAAGTATTCAAACAGAAAAAGAAGGTTCTGGTACTTCTGAGCCAATTGTTGTGGAGGCGAGCTCCGGTGTGAAAGAAGACAATGCTGTAGAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGACTTAGAAAAAGCTTTGAATTTTGAGCAATTTAGTTCAGCGGCGGAACTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCGGCATGGAGAGGTTAAAATCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231138" ref_strand="+" ref_description="SGN-E231138 [cLED-5-G17]">
      <seq>cagagtccaaaaagctcaagatatggaagggtaagaggataatgggtgatagtgatagcgaagatctagatgatgatgactgtgatgaagaagaggaagagaaagagaaatccatcgtcatagataatgggggcaattcagactccaatggagaagcagagggaagtttggattctgtaactggcagaaaagttgatggtggtgcatctgagagtggctccgaggaagaaaaggatactcttcttctgaagaatcttgaacctggtaaagatgtcaatgtaaatgcagttcaccatgaaagtgaaagtctgtcctcactcactccagacagtccagaaaatactgggcagagtgctgttgcctctagtgttggcactgatattgcatctgtgattgaaagtattcaaacagaaaaagaagcttctggtgcttctgagccaattgttgtggaggggagctctggtgtgaaagaaaacaatgctgncaaacccagtaataatctaagccctatatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98986" stop="101171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99286" g_stop="99310" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99311" i_stop="100381" i_length="1071">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100382" g_stop="100871" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="515" r_length="490" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E231138" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99286" e_stop="99310"/>
          <exon e_start="100382" e_stop="100871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCCAAAAAGCTCAAGATATGGTAAGAACTGTCACCTTTGTATTTCTTGCATTCTTTTTGCCCCTTTTTGTTTAAGAACAACTAATTTGTTTTGAAAAGCCTCAATTTTTAGTATTGTAATGAGGAATGACTATTGAGGATTAGTATTGGAATGAGGAATGACTATTGAGGATTAGTATTGGAATGAGGAATGATCATTGAGGATTTGTGGGTGACTCGACTAGTTTGTGGTTTAGGTCTGCTGTGGTTTTATGTTGAATTGAGTTCCTTTTTGGAAGCCATATCTTGGGTGGAACAATTGAATGTCATCTCTGTTCTTTTTAGGGAGTGAAATAGATTTCAGTTTAATGTGAGTGCTTTGACTCCATCCTTTGTATTTTCCAAAATCAAGTAGTTTTGATAGGCGATACTCTTGTATACCATAGAACCTTGGTTAACGAGTGGAACAGTCTGCTCAGATGTTGAGCAATCAGGGACGGTTATGGGAAATGATCCATTATCAGCATTCTTAAGACCAAGTAGTTGGACAGAAAGGAGGGGAAGTTCTCCCTACCTGGTTTTCCTGATTCTCTCTTTTTATATAATTATTTATTTACTTACTTGATACAGGATGTTGGTTCTCCTGTAGTTGGTTCATAAGAATCCTTAATTAGAATGGGTTTTTGACTTTTCCATCTCCAATTTCGCTCGACCACTATTTACCTAATCAATTTGCTGTTAAAATAAAGTGGTGGAGTGTCACTGTTTTGTTTTTATTATATATATTAAACAATCCAAAGGGGGAGACCTAATGGTCAACGAAATGGTAGGAGAGCCATGATGTGTTTCTCAGGTTCAAATCTGCCTAAGCCTTGTAAATTATATTAAACACTCATAACTGTACTTGTTACCTGCCTGATAGAAAACCTTGTAAACTTTTCAATGATTAAATGATTGAATGCACGTAGTAGAAATTATGTTTTTTCTTTGATGATTCTCCACTTTTTGCACAGTTTTTATACATAATCTATATGTTGAATTTTCTCATTTGTTCAATGAACTTATTATCTTATAAAAAAGGAATTATAACTTACAGTTTGTGATTTTTGGTAGGAAGGGTAAGAGGATAATGGGTGATAGTGATAGCGAAGATCTAGATGATGATGACTGTGATGAAGAAGAGGAAGAGAAAGAGAAATCCATCGTCATAGATAATGGGGGCAATTCAGACTCCAATGGAGAAGCAGAGGGAAGTTTGGATTCTGTAACTGGCAGAAAAGTTGATGGTGGTGCATCTGAGAGTGGCTCCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAACCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAAGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGCTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGTGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTGCTTCTGAGCCAATTGTTGTGGAGGGGAGCTCTGGTGTGAAAGAAAACAATGCTGCAAAACCCAGTAATAATCTAAGCCCTATATCA</genome_strand>
        <mrna_strand>CAGAGTCCAAAAAGCTCAAGATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGTAAGAGGATAATGGGTGATAGTGATAGCGAAGATCTAGATGATGATGACTGTGATGAAGAAGAGGAAGAGAAAGAGAAATCCATCGTCATAGATAATGGGGGCAATTCAGACTCCAATGGAGAAGCAGAGGGAAGTTTGGATTCTGTAACTGGCAGAAAAGTTGATGGTGGTGCATCTGAGAGTGGCTCCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAACCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAAGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGCTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGTGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTGCTTCTGAGCCAATTGTTGTGGAGGGGAGCTCTGGTGTGAAAGAAAACAATGCTGNCAAACCCAGTAATAATCTAAGCCCTATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E568780" ref_strand="+" ref_description="SGN-E568780 [13116]">
      <seq>aaaaagctcaagatatgggtaagaggataatgggcgatagtgatagcgaggatctagatgatgatgatgacagtgacgaagaagaggaagagaaagataaatccattgtcatagataatgggggtaattcagactccaatggagaaacagagggaagtttggattctgtgactggcagaaaagttgagggtggtgcgtctgagagtggctccgaggaagaaaaggatactcttcttctgaagaatcttgaatctggtaaagatgtcaatgtaaatgcagttcaccatgaaggtgaaagtctgtcctcactcactccagacagtccagaaaatactgggcagagtgttgttgcctctagtgttggcactgatattgcatctgcgattgaaagtattcaaacagaaaaagaagcttctggtacttctgagccaattgttgtggaggcgagctctggtgtgaaaggaaaccatgctgtagaacccaggtaataatctaagccctatatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="98994" stop="101172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99294" g_stop="99310" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99311" i_stop="100385" i_length="1075">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.905" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100386" g_stop="100872" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="508" r_length="491" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E568780" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99294" e_stop="99310"/>
          <exon e_start="100386" e_stop="100872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTCAAGATATGGTAAGAACTGTCACCTTTGTATTTCTTGCATTCTTTTTGCCCCTTTTTGTTTAAGAACAACTAATTTGTTTTGAAAAGCCTCAATTTTTAGTATTGTAATGAGGAATGACTATTGAGGATTAGTATTGGAATGAGGAATGACTATTGAGGATTAGTATTGGAATGAGGAATGATCATTGAGGATTTGTGGGTGACTCGACTAGTTTGTGGTTTAGGTCTGCTGTGGTTTTATGTTGAATTGAGTTCCTTTTTGGAAGCCATATCTTGGGTGGAACAATTGAATGTCATCTCTGTTCTTTTTAGGGAGTGAAATAGATTTCAGTTTAATGTGAGTGCTTTGACTCCATCCTTTGTATTTTCCAAAATCAAGTAGTTTTGATAGGCGATACTCTTGTATACCATAGAACCTTGGTTAACGAGTGGAACAGTCTGCTCAGATGTTGAGCAATCAGGGACGGTTATGGGAAATGATCCATTATCAGCATTCTTAAGACCAAGTAGTTGGACAGAAAGGAGGGGAAGTTCTCCCTACCTGGTTTTCCTGATTCTCTCTTTTTATATAATTATTTATTTACTTACTTGATACAGGATGTTGGTTCTCCTGTAGTTGGTTCATAAGAATCCTTAATTAGAATGGGTTTTTGACTTTTCCATCTCCAATTTCGCTCGACCACTATTTACCTAATCAATTTGCTGTTAAAATAAAGTGGTGGAGTGTCACTGTTTTGTTTTTATTATATATATTAAACAATCCAAAGGGGGAGACCTAATGGTCAACGAAATGGTAGGAGAGCCATGATGTGTTTCTCAGGTTCAAATCTGCCTAAGCCTTGTAAATTATATTAAACACTCATAACTGTACTTGTTACCTGCCTGATAGAAAACCTTGTAAACTTTTCAATGATTAAATGATTGAATGCACGTAGTAGAAATTATGTTTTTTCTTTGATGATTCTCCACTTTTTGCACAGTTTTTATACATAATCTATATGTTGAATTTTCTCATTTGTTCAATGAACTTATTATCTTATAAAAAAGGAATTATAACTTACAGTTTGTGATTTTTGGTAGGAAGGGTAAGAGGATAATGGGTGATAGTGATAGCGAAGATCT--A-GATGATGATGACTGTGATGAAGAAGAGGAAGAGAAAGAGAAATCCATCGTCATAGATAATGGGGGCAATTCAGACTCCAATGGAGAAGCAGAGGGAAGTTTGGATTCTGTAACTGGCAGAAAAGTTGATGGTGGTGCATCTGAGAGTGGCTCCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAACCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAAGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGCTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGTGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTGCTTCTGAGCCAATTGTTGTGGAGGGGAGCTCTGGTGTGAAAGAAAACAATGCTGCAAAACCCA-GTAATAATCTAAGCCCTATATCAG</genome_strand>
        <mrna_strand>AAAAAGCTCAAGATATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAGAGGATAATGGGCGATAGTGATAGCGAGGATCTAGATGATGATGATGACAGTGACGAAGAAGAGGAAGAGAAAGATAAATCCATTGTCATAGATAATGGGGGTAATTCAGACTCCAATGGAGAAACAGAGGGAAGTTTGGATTCTGTGACTGGCAGAAAAGTTGAGGGTGGTGCGTCTGAGAGTGGCTCCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAATCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAGGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGTTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGCGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTACTTCTGAGCCAATTGTTGTGGAGGCGAGCTCTGGTGTGAAAGGAAACCATGCTGTAGAACCCAGGTAATAATCTAAGCCCTATATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E457694" ref_strand="+" ref_description="SGN-E457694 [cPRO-3-O8]">
      <seq>gtgatagcgaggatctagatgatgatgatgacagtgacgaagaagaggaagagaaagataaatccattgtcatagataatgggggtaattcagactccaatggagaaacagagggaagtttggattctgtgactggcagaaaagttgatggtggtgcgtctgagagtggctccgaggaagaaaggatactcttcttctgaagaatcttgaatctggtaaagatgtcaatgtaaatgcagttcaccatgaaggtgaaagtctgtcctcactcactccagacagtccagaaaatactgggcagagtgttgttgcctctagtgttggcactgatattgcatctgcgattgaaagtattcaaacagaaaaagaagcttctggtacttctgagccaattgttgtggaggcgagctctggtgtngaaggaaacaatgctgtagaacccagtaataatctaagccctatatcagaacctcaggaagatgcagtctcnaaggattcagacttagaaaaacctttgaattttgagcaatttagttcagcggcggaactggaggtcctcggcatggagaggttaaatcagaacttncagtgcgtgggttgaagtgtggaggcaccctgcangaacgtgcagccaggcttttcttactcaaaaccacacctctggagatgcttccaaagaagttgcttgctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="100114" stop="102612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100408" g_stop="100958" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100959" i_stop="102169" i_length="1211">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102170" g_stop="102311" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="694" r_length="141" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E457694" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100408" e_stop="100958"/>
          <exon e_start="102170" e_stop="102311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATAGCGAAGATCT--A-GATGATGATGACTGTGATGAAGAAGAGGAAGAGAAAGAGAAATCCATCGTCATAGATAATGGGGGCAATTCAGACTCCAATGGAGAAGCAGAGGGAAGTTTGGATTCTGTAACTGGCAGAAAAGTTGATGGTGGTGCATCTGAGAGTGGCTCCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAACCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAAGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGCTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGTGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTGCTTCTGAGCCAATTGTTGTGGAGGGGAGCTCTGGTGTGAAAGAAAACAATGCTGCAAAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGAGTTAGAAAAACCTTTGAATTTTGAGCAGTTTAGTTCAGCAGCGGAACTGGAGGTATGCATCATCTCTCATATAGTATAGTTGATCTCCATTGCTTACTACATCTGTGTTGTTCAATATGTATCATTAAAGGCTTCCTCTGCTTGCTGTAGCAATTTGTTTTCAACTGGTTGTTAATCAAAATTAAGATTACAATGCTTCACCTTTTCACTTTGGCTAATTTACCCCCCCCCCCCCCCCCCCCCCGCGTGTGTCCCTTTCAGTTGTGGATGGCTCAAGATTGTTACTTGTTTACATGGCCTTCCCTGTGAGATCAATAGCAGTTAATAAATAATTATTTTGGTGTGTGTGTGTGTGTGGGCTAGTGGCTAAGTAGGAGAGTCCCAACACTTCTATAGCCTGCAGGCTGCACTGCAGGTAAACGTAACCTGTTTACAGTGAAACCCTTAAGAGGGTTAATAAACACCTCATCTGTCATGGTCCATACTTTTTTAATCATCTTAGCTGATGTCTGAGTTTAATTGTTATTTTTCTTCTGTTCTTGCATAACGAATGACATTGCTGCTTTTCTAATTTGTGTTTTAATGTCGATTCAGTGATATCGCTTCAATTACTAGTATAAAACCTCTTTTTGGCTTCAATGGGATGTTAACAAAGTTGCTGGAAAATGATTCTGAAGAAAATAAAAATAAAAAAAGGCAGGGAAGTCATTCTCTAGTATTCTTTGTTTGAAAAGAATTGGAGTTTAAATGAGAACAAGACCATTTCTTTTTCCTTACATTTGCAGCACTTCGGAGGAAATCTTTCCTGGGTCCAACAACTTTATTTTTTACTAAATGCATCAAAAAGTGTGAATAATTTACTTTCTGGTACTTGGTTTTCCATTTCCCCACAATCAAATGGTACCTATGTGTCCTTACTGCGAGTTAAAATCGGTTTTAGGGGGGAAAGGATGTGTGTCTTCTGTTTGTTGGTCTTCCGTTCTTGTTGGAACTGTGGCATTCGGGCATTGCTTGGTTCATCTGCCACTGCTAAGTTTGTACTCTTCGACTCTGATAACAGTATGGAAGTATGACATGAATAATTTTTTTTATATATATGCTATTTTAACTGGGACTTTATACTATGATTTTTGCATTGATTGTTGTGTGGTCTCTATGTTTTCCTCATCACCCGTAAGCTTGTGTTACTGTTCATTGGTGAATGCAGTAGTGTTTGTTACCAATAGTTCCTAGCTAAATGTATTTTTGATTTGGTTGTGTTAGGTACTCGGCATGGAGAAGTTAAAGTCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGAGGCACCCTGCAAGAACGTGCAGCCAGGCTTTTCTTACTCAAAACCACACCTTTGGAAATGCTTCCAAAGAAGTTGCTTGCTAAGA</genome_strand>
        <mrna_strand>GTGATAGCGAGGATCTAGATGATGATGATGACAGTGACGAAGAAGAGGAAGAGAAAGATAAATCCATTGTCATAGATAATGGGGGTAATTCAGACTCCAATGGAGAAACAGAGGGAAGTTTGGATTCTGTGACTGGCAGAAAAGTTGATGGTGGTGCGTCTGAGAGTGGCTCCGAGGAAG-AAAGGATACTCTTCTTCTGAAGAATCTTGAATCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAGGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGTTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGCGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTACTTCTGAGCCAATTGTTGTGGAGGCGAGCTCTGGTGTNGAAGGAAACAATGCTGTAGAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCNAAGGATTCAGACTTAGAAAAACCTTTGAATTTTGAGCAATTTAGTTCAGCGGCGGAACTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCGGCATGGAGAGGTTAAA-TCAGAACTTNCAGTGCGTGGGTTGAAGTGTGGAGGCACCCTGCANGAACGTGCAGCCAGGCTTTTCTTACTCAAAACCACACCTCTGGAGATGCTTCCAAAGAAGTTGCTTGCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E429656" ref_strand="+" ref_description="SGN-E429656 [STM-52-M18]">
      <seq>gtgatagcgaggatctagatgatgatgatgacagtgacgaagaagaggaagagaaagataaatccattgtcatagataatgggggtaattcagactccaatggagaaacagagggaagtttggattctgtgactggcagaaaagttgatggtggtgcgtctgagagtggctccgaggaagaaaaggatactcttcttctgaagaatcttgaatctggtaaagatgtcaatgtaaatgcagttcaccatgaaggtgaaagtctgtcctcactcactccagacagtccagaaaatactgggcagagtgttgttgcctctagtgttggcactgatattgcatctgcgattgaaagtattcaaacagaaaaagaagcttctggtacttctgagccaattgttgtggaggcgagctctggtgtgaaaggaaacaatgctgtagaacccagtaataatctaagccctatatcagaacctcaggaagatgcagtctcaaaggattcagacttagaaaaacctttgaattttgagcaatttagttcagcggcggaactggaggtcctcggcatggagaggttaaaatcagaacttcaagtgcgtgggttgaagtgtggaggcaccctgcaggaacgtgcagccaggcttttcttactcaaaacacacctctggagatgcttccaaagaaagtgcttgctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="100114" stop="102612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100408" g_stop="100958" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100959" i_stop="102169" i_length="1211">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102170" g_stop="102311" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="695" r_length="141" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E429656" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100408" e_stop="100958"/>
          <exon e_start="102170" e_stop="102311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATAGCGAAGATCT--A-GATGATGATGACTGTGATGAAGAAGAGGAAGAGAAAGAGAAATCCATCGTCATAGATAATGGGGGCAATTCAGACTCCAATGGAGAAGCAGAGGGAAGTTTGGATTCTGTAACTGGCAGAAAAGTTGATGGTGGTGCATCTGAGAGTGGCTCCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAACCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAAGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGCTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGTGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTGCTTCTGAGCCAATTGTTGTGGAGGGGAGCTCTGGTGTGAAAGAAAACAATGCTGCAAAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGAGTTAGAAAAACCTTTGAATTTTGAGCAGTTTAGTTCAGCAGCGGAACTGGAGGTATGCATCATCTCTCATATAGTATAGTTGATCTCCATTGCTTACTACATCTGTGTTGTTCAATATGTATCATTAAAGGCTTCCTCTGCTTGCTGTAGCAATTTGTTTTCAACTGGTTGTTAATCAAAATTAAGATTACAATGCTTCACCTTTTCACTTTGGCTAATTTACCCCCCCCCCCCCCCCCCCCCCGCGTGTGTCCCTTTCAGTTGTGGATGGCTCAAGATTGTTACTTGTTTACATGGCCTTCCCTGTGAGATCAATAGCAGTTAATAAATAATTATTTTGGTGTGTGTGTGTGTGTGGGCTAGTGGCTAAGTAGGAGAGTCCCAACACTTCTATAGCCTGCAGGCTGCACTGCAGGTAAACGTAACCTGTTTACAGTGAAACCCTTAAGAGGGTTAATAAACACCTCATCTGTCATGGTCCATACTTTTTTAATCATCTTAGCTGATGTCTGAGTTTAATTGTTATTTTTCTTCTGTTCTTGCATAACGAATGACATTGCTGCTTTTCTAATTTGTGTTTTAATGTCGATTCAGTGATATCGCTTCAATTACTAGTATAAAACCTCTTTTTGGCTTCAATGGGATGTTAACAAAGTTGCTGGAAAATGATTCTGAAGAAAATAAAAATAAAAAAAGGCAGGGAAGTCATTCTCTAGTATTCTTTGTTTGAAAAGAATTGGAGTTTAAATGAGAACAAGACCATTTCTTTTTCCTTACATTTGCAGCACTTCGGAGGAAATCTTTCCTGGGTCCAACAACTTTATTTTTTACTAAATGCATCAAAAAGTGTGAATAATTTACTTTCTGGTACTTGGTTTTCCATTTCCCCACAATCAAATGGTACCTATGTGTCCTTACTGCGAGTTAAAATCGGTTTTAGGGGGGAAAGGATGTGTGTCTTCTGTTTGTTGGTCTTCCGTTCTTGTTGGAACTGTGGCATTCGGGCATTGCTTGGTTCATCTGCCACTGCTAAGTTTGTACTCTTCGACTCTGATAACAGTATGGAAGTATGACATGAATAATTTTTTTTATATATATGCTATTTTAACTGGGACTTTATACTATGATTTTTGCATTGATTGTTGTGTGGTCTCTATGTTTTCCTCATCACCCGTAAGCTTGTGTTACTGTTCATTGGTGAATGCAGTAGTGTTTGTTACCAATAGTTCCTAGCTAAATGTATTTTTGATTTGGTTGTGTTAGGTACTCGGCATGGAGAAGTTAAAGTCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGAGGCACCCTGCAAGAACGTGCAGCCAGGCTTTTCTTACTCAAAACCACACCTTTGGAAATGCTTCCAAAGAAGTTGCTTGCTAAGA</genome_strand>
        <mrna_strand>GTGATAGCGAGGATCTAGATGATGATGATGACAGTGACGAAGAAGAGGAAGAGAAAGATAAATCCATTGTCATAGATAATGGGGGTAATTCAGACTCCAATGGAGAAACAGAGGGAAGTTTGGATTCTGTGACTGGCAGAAAAGTTGATGGTGGTGCGTCTGAGAGTGGCTCCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAATCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAGGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGTTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGCGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTACTTCTGAGCCAATTGTTGTGGAGGCGAGCTCTGGTGTGAAAGGAAACAATGCTGTAGAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGACTTAGAAAAACCTTTGAATTTTGAGCAATTTAGTTCAGCGGCGGAACTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCGGCATGGAGAGGTTAAAATCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGAGGCACCCTGCAGGAACGTGCAGCCAGGCTTTTCTTACTCAAAA-CACACCTCTGGAGATGCTTCCAAAGAAAGTGCTTGCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426403" ref_strand="-" ref_description="SGN-E426403 [STM-46-D13]">
      <seq>aaaagttgatggtggtgcgtctgagagtggctccgaggaagaaaaggatactcttcttctgaagaatctgaaatctggtaaagatgtcaatgtaaatgcagttcaccatgaaggtgaaagtctgtcctcactcactccagacagtccagaaaatactgggcagagtgttgttgcctctagtgttggcactgatattgcatctgcgattgaaagtattcaaacagaaaaagaagcttctggtacttctgagccaattgttgtggaggcgagctctggtgtgaaaggaaacaatgctgtagaacccagtaataatctaagccctatatcagaacctcaggaagatgcagtctcaaaggattcagacttagaaaaacctttgaattttgagcaatttagttcagcggcggaactggaggtcctcggcatggagaggttaaaatcagaacttcaagtgcgtgggttgaagtgtggaggcaccctgcaggaacgtgcagccaggcttttcttactcaaaaccacacctctggagatgcttccaaagaagttgcttgctaaaaagtaattttgtgctcgtttgttttgctattgtagctggttgtaattgtaacctcatgttttgagtgtcagcttattctctatttgacttactaggtagatatacgtgtgtatttttctatagatttcaacaacttccaaggacgaacagcagtaattcactttttagagtgatacaagaaaaactgatgttgatttgttcaaaaaaagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="100244" stop="102782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100544" g_stop="100958" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100959" i_stop="102169" i_length="1211">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102170" g_stop="102482" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="735" r_length="320" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E426403" ref_strand="-">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426403" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="100544" e_stop="100958"/>
          <exon e_start="102170" e_stop="102482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTGATGGTGGTGCATCTGAGAGTGGCTCCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAACCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAAGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGCTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGTGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTGCTTCTGAGCCAATTGTTGTGGAGGGGAGCTCTGGTGTGAAAGAAAACAATGCTGCAAAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGAGTTAGAAAAACCTTTGAATTTTGAGCAGTTTAGTTCAGCAGCGGAACTGGAGGTATGCATCATCTCTCATATAGTATAGTTGATCTCCATTGCTTACTACATCTGTGTTGTTCAATATGTATCATTAAAGGCTTCCTCTGCTTGCTGTAGCAATTTGTTTTCAACTGGTTGTTAATCAAAATTAAGATTACAATGCTTCACCTTTTCACTTTGGCTAATTTACCCCCCCCCCCCCCCCCCCCCCGCGTGTGTCCCTTTCAGTTGTGGATGGCTCAAGATTGTTACTTGTTTACATGGCCTTCCCTGTGAGATCAATAGCAGTTAATAAATAATTATTTTGGTGTGTGTGTGTGTGTGGGCTAGTGGCTAAGTAGGAGAGTCCCAACACTTCTATAGCCTGCAGGCTGCACTGCAGGTAAACGTAACCTGTTTACAGTGAAACCCTTAAGAGGGTTAATAAACACCTCATCTGTCATGGTCCATACTTTTTTAATCATCTTAGCTGATGTCTGAGTTTAATTGTTATTTTTCTTCTGTTCTTGCATAACGAATGACATTGCTGCTTTTCTAATTTGTGTTTTAATGTCGATTCAGTGATATCGCTTCAATTACTAGTATAAAACCTCTTTTTGGCTTCAATGGGATGTTAACAAAGTTGCTGGAAAATGATTCTGAAGAAAATAAAAATAAAAAAAGGCAGGGAAGTCATTCTCTAGTATTCTTTGTTTGAAAAGAATTGGAGTTTAAATGAGAACAAGACCATTTCTTTTTCCTTACATTTGCAGCACTTCGGAGGAAATCTTTCCTGGGTCCAACAACTTTATTTTTTACTAAATGCATCAAAAAGTGTGAATAATTTACTTTCTGGTACTTGGTTTTCCATTTCCCCACAATCAAATGGTACCTATGTGTCCTTACTGCGAGTTAAAATCGGTTTTAGGGGGGAAAGGATGTGTGTCTTCTGTTTGTTGGTCTTCCGTTCTTGTTGGAACTGTGGCATTCGGGCATTGCTTGGTTCATCTGCCACTGCTAAGTTTGTACTCTTCGACTCTGATAACAGTATGGAAGTATGACATGAATAATTTTTTTTATATATATGCTATTTTAACTGGGACTTTATACTATGATTTTTGCATTGATTGTTGTGTGGTCTCTATGTTTTCCTCATCACCCGTAAGCTTGTGTTACTGTTCATTGGTGAATGCAGTAGTGTTTGTTACCAATAGTTCCTAGCTAAATGTATTTTTGATTTGGTTGTGTTAGGTACTCGGCATGGAGAAGTTAAAGTCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGAGGCACCCTGCAAGAACGTGCAGCCAGGCTTTTCTTACTCAAAACCACACCTTTGGAAATGCTTCCAAAGAAGTTGCTTGCTAAGAAGTAATTTTGTGCTCGTCTGTTTTGCTATTGTAGCTGGTTGTAATTGTAACCTCA-----T--GT-TCAGCTTATTCTCTGTTTTACTTGCTATGTAAATATGCGTGTGCATTTTTCAATATATTTCAACAACTTCCAAGGACGAACAGTAGTAATTCACTTTTTTAGAGTAATAAAAG</genome_strand>
        <mrna_strand>AAAAGTTGATGGTGGTGCGTCTGAGAGTGGCTCCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTGAAATCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAGGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGTTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGCGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTACTTCTGAGCCAATTGTTGTGGAGGCGAGCTCTGGTGTGAAAGGAAACAATGCTGTAGAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGACTTAGAAAAACCTTTGAATTTTGAGCAATTTAGTTCAGCGGCGGAACTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCGGCATGGAGAGGTTAAAATCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGAGGCACCCTGCAGGAACGTGCAGCCAGGCTTTTCTTACTCAAAACCACACCTCTGGAGATGCTTCCAAAGAAGTTGCTTGCTAAAAAGTAATTTTGTGCTCGTTTGTTTTGCTATTGTAGCTGGTTGTAATTGTAACCTCATGTTTTGAGTGTCAGCTTATTCTCTATTTGACTTACTAGGTAGATATACGTGTGTATTTTTCTATAGATTTCAACAACTTCCAAGGACGAACAGCAGTAATTCAC-TTTTTAGAGTGATACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576740" ref_strand="-" ref_description="SGN-E576740 [60006]">
      <seq>tgagagtggctccgaggaagaaaaggatactcttcttctgaagaatcttgaatctggtaaagatgtcaatgtaaatgcagttcaccatgaaggtgaaagtctgtcctcactcactccagacagtccagaaaatactgggcagagtgttgttgcctctagtgttggcactgatattgcatctgcgattgaaagtattcaaacagaaaaagaagcttctggtacttctgagccaattgttgtggaggcgagctctggtgtgaaaggaaacaatgctgtagaacccagtaataatctaagccctatatcagaacctcaggaagatgcagtctcaaaggattcagacttagaaaaacctttgaattttgagcaatttagttcagcggcggaactggaggtcctcggcatggagaggttaaaatcagaacttcaagtgcgtgggttgaagtgtggaggcaccctgcaggaacgtgcagccaggcttttcttactcaaaaccacacctctggagatgcttccaaagaagttgcttgctaaaaagtaattttgtgctcgtttgttttgctattgtagctggttgtaattgtaacctcatgttttgagtgtcagcttattctctatttgacttactaggtagatatacgtgtgtatttttctatagatttcaacaacttccaaggacgaacagcagtaattcactttttagagtgatacaaggtggctgatgttgatttggttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatacacgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="100265" stop="102809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100565" g_stop="100958" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100959" i_stop="102169" i_length="1211">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102170" g_stop="102482" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="714" r_length="320" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="738" polyA_stop="774"/>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E576740" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576740" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="100565" e_stop="100958"/>
          <exon e_start="102170" e_stop="102482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAGTGGCTCCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAACCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAAGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGCTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGTGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTGCTTCTGAGCCAATTGTTGTGGAGGGGAGCTCTGGTGTGAAAGAAAACAATGCTGCAAAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGAGTTAGAAAAACCTTTGAATTTTGAGCAGTTTAGTTCAGCAGCGGAACTGGAGGTATGCATCATCTCTCATATAGTATAGTTGATCTCCATTGCTTACTACATCTGTGTTGTTCAATATGTATCATTAAAGGCTTCCTCTGCTTGCTGTAGCAATTTGTTTTCAACTGGTTGTTAATCAAAATTAAGATTACAATGCTTCACCTTTTCACTTTGGCTAATTTACCCCCCCCCCCCCCCCCCCCCCGCGTGTGTCCCTTTCAGTTGTGGATGGCTCAAGATTGTTACTTGTTTACATGGCCTTCCCTGTGAGATCAATAGCAGTTAATAAATAATTATTTTGGTGTGTGTGTGTGTGTGGGCTAGTGGCTAAGTAGGAGAGTCCCAACACTTCTATAGCCTGCAGGCTGCACTGCAGGTAAACGTAACCTGTTTACAGTGAAACCCTTAAGAGGGTTAATAAACACCTCATCTGTCATGGTCCATACTTTTTTAATCATCTTAGCTGATGTCTGAGTTTAATTGTTATTTTTCTTCTGTTCTTGCATAACGAATGACATTGCTGCTTTTCTAATTTGTGTTTTAATGTCGATTCAGTGATATCGCTTCAATTACTAGTATAAAACCTCTTTTTGGCTTCAATGGGATGTTAACAAAGTTGCTGGAAAATGATTCTGAAGAAAATAAAAATAAAAAAAGGCAGGGAAGTCATTCTCTAGTATTCTTTGTTTGAAAAGAATTGGAGTTTAAATGAGAACAAGACCATTTCTTTTTCCTTACATTTGCAGCACTTCGGAGGAAATCTTTCCTGGGTCCAACAACTTTATTTTTTACTAAATGCATCAAAAAGTGTGAATAATTTACTTTCTGGTACTTGGTTTTCCATTTCCCCACAATCAAATGGTACCTATGTGTCCTTACTGCGAGTTAAAATCGGTTTTAGGGGGGAAAGGATGTGTGTCTTCTGTTTGTTGGTCTTCCGTTCTTGTTGGAACTGTGGCATTCGGGCATTGCTTGGTTCATCTGCCACTGCTAAGTTTGTACTCTTCGACTCTGATAACAGTATGGAAGTATGACATGAATAATTTTTTTTATATATATGCTATTTTAACTGGGACTTTATACTATGATTTTTGCATTGATTGTTGTGTGGTCTCTATGTTTTCCTCATCACCCGTAAGCTTGTGTTACTGTTCATTGGTGAATGCAGTAGTGTTTGTTACCAATAGTTCCTAGCTAAATGTATTTTTGATTTGGTTGTGTTAGGTACTCGGCATGGAGAAGTTAAAGTCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGAGGCACCCTGCAAGAACGTGCAGCCAGGCTTTTCTTACTCAAAACCACACCTTTGGAAATGCTTCCAAAGAAGTTGCTTGCTAAGAAGTAATTTTGTGCTCGTCTGTTTTGCTATTGTAGCTGGTTGTAATTGTAACCTCA-----T--GT-TCAGCTTATTCTCTGTTTTACTTGCTATGTAAATATGCGTGTGCATTTTTCAATATATTTCAACAACTTCCAAGGACGAACAGTAGTAATTCACTTTTTTAGAGTAATAAAAG</genome_strand>
        <mrna_strand>TGAGAGTGGCTCCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAATCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAGGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGTTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGCGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTACTTCTGAGCCAATTGTTGTGGAGGCGAGCTCTGGTGTGAAAGGAAACAATGCTGTAGAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGACTTAGAAAAACCTTTGAATTTTGAGCAATTTAGTTCAGCGGCGGAACTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCGGCATGGAGAGGTTAAAATCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGAGGCACCCTGCAGGAACGTGCAGCCAGGCTTTTCTTACTCAAAACCACACCTCTGGAGATGCTTCCAAAGAAGTTGCTTGCTAAAAAGTAATTTTGTGCTCGTTTGTTTTGCTATTGTAGCTGGTTGTAATTGTAACCTCATGTTTTGAGTGTCAGCTTATTCTCTATTTGACTTACTAGGTAGATATACGTGTGTATTTTTCTATAGATTTCAACAACTTCCAAGGACGAACAGCAGTAATTCAC-TTTTTAGAGTGATACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E429657" ref_strand="-" ref_description="SGN-E429657 [STM-52-M18]">
      <seq>ccgaggaagaaaaggatactcttcttctgaagaatcttgaatctggtaaagatgtcaatgtaaatgcagttcaccatgaaggtgaaagtctgtcctcactcactccagacagtccagaaaatactgggcagagtgttgttgcctctagtgttggcactgatattgcatctgcgattgaaagtattcaaacagaaaaagaagcttctggtacttctgagccaattgttgtggaggcgagctctggtgtgaaaggaaacaatgctgtagaacccagtaataatctaagccctatatcagaacctcaggaagatgcagtctcaaaggattcagacttagaaaaacctttgaattttgagcaatttagttcagcggcggaactggaggtcctcggcatggagaggttaaaatcagaacttcaagtgcgtgggttgaagtgtggaggcaccctgcaggaacgtgcagccaggcttttcttactcaaaaccacacctctggagatgcttccaaagaagttgcttgctaaaaagtaattttgtgctcgtttgttttgctattgtagctggttgtaattgtaacctcatgttttgagtgtcagcttattctctatttgacttactaggtagatatacgtgtgtatttttctatagatttcaacaacttccaaggacgaacagcagtaattcactttttagagtgatacaaggaggctgatgttgatttggttccaaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="100276" stop="102809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100576" g_stop="100958" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100959" i_stop="102169" i_length="1211">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102170" g_stop="102482" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="703" r_length="320" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E429657" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429657" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="100576" e_stop="100958"/>
          <exon e_start="102170" e_stop="102482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAACCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAAGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGCTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGTGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTGCTTCTGAGCCAATTGTTGTGGAGGGGAGCTCTGGTGTGAAAGAAAACAATGCTGCAAAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGAGTTAGAAAAACCTTTGAATTTTGAGCAGTTTAGTTCAGCAGCGGAACTGGAGGTATGCATCATCTCTCATATAGTATAGTTGATCTCCATTGCTTACTACATCTGTGTTGTTCAATATGTATCATTAAAGGCTTCCTCTGCTTGCTGTAGCAATTTGTTTTCAACTGGTTGTTAATCAAAATTAAGATTACAATGCTTCACCTTTTCACTTTGGCTAATTTACCCCCCCCCCCCCCCCCCCCCCGCGTGTGTCCCTTTCAGTTGTGGATGGCTCAAGATTGTTACTTGTTTACATGGCCTTCCCTGTGAGATCAATAGCAGTTAATAAATAATTATTTTGGTGTGTGTGTGTGTGTGGGCTAGTGGCTAAGTAGGAGAGTCCCAACACTTCTATAGCCTGCAGGCTGCACTGCAGGTAAACGTAACCTGTTTACAGTGAAACCCTTAAGAGGGTTAATAAACACCTCATCTGTCATGGTCCATACTTTTTTAATCATCTTAGCTGATGTCTGAGTTTAATTGTTATTTTTCTTCTGTTCTTGCATAACGAATGACATTGCTGCTTTTCTAATTTGTGTTTTAATGTCGATTCAGTGATATCGCTTCAATTACTAGTATAAAACCTCTTTTTGGCTTCAATGGGATGTTAACAAAGTTGCTGGAAAATGATTCTGAAGAAAATAAAAATAAAAAAAGGCAGGGAAGTCATTCTCTAGTATTCTTTGTTTGAAAAGAATTGGAGTTTAAATGAGAACAAGACCATTTCTTTTTCCTTACATTTGCAGCACTTCGGAGGAAATCTTTCCTGGGTCCAACAACTTTATTTTTTACTAAATGCATCAAAAAGTGTGAATAATTTACTTTCTGGTACTTGGTTTTCCATTTCCCCACAATCAAATGGTACCTATGTGTCCTTACTGCGAGTTAAAATCGGTTTTAGGGGGGAAAGGATGTGTGTCTTCTGTTTGTTGGTCTTCCGTTCTTGTTGGAACTGTGGCATTCGGGCATTGCTTGGTTCATCTGCCACTGCTAAGTTTGTACTCTTCGACTCTGATAACAGTATGGAAGTATGACATGAATAATTTTTTTTATATATATGCTATTTTAACTGGGACTTTATACTATGATTTTTGCATTGATTGTTGTGTGGTCTCTATGTTTTCCTCATCACCCGTAAGCTTGTGTTACTGTTCATTGGTGAATGCAGTAGTGTTTGTTACCAATAGTTCCTAGCTAAATGTATTTTTGATTTGGTTGTGTTAGGTACTCGGCATGGAGAAGTTAAAGTCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGAGGCACCCTGCAAGAACGTGCAGCCAGGCTTTTCTTACTCAAAACCACACCTTTGGAAATGCTTCCAAAGAAGTTGCTTGCTAAGAAGTAATTTTGTGCTCGTCTGTTTTGCTATTGTAGCTGGTTGTAATTGTAACCTCA-----T--GT-TCAGCTTATTCTCTGTTTTACTTGCTATGTAAATATGCGTGTGCATTTTTCAATATATTTCAACAACTTCCAAGGACGAACAGTAGTAATTCACTTTTTTAGAGTAATAAAAG</genome_strand>
        <mrna_strand>CCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAATCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAGGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGTTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGCGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTACTTCTGAGCCAATTGTTGTGGAGGCGAGCTCTGGTGTGAAAGGAAACAATGCTGTAGAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGACTTAGAAAAACCTTTGAATTTTGAGCAATTTAGTTCAGCGGCGGAACTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCGGCATGGAGAGGTTAAAATCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGAGGCACCCTGCAGGAACGTGCAGCCAGGCTTTTCTTACTCAAAACCACACCTCTGGAGATGCTTCCAAAGAAGTTGCTTGCTAAAAAGTAATTTTGTGCTCGTTTGTTTTGCTATTGTAGCTGGTTGTAATTGTAACCTCATGTTTTGAGTGTCAGCTTATTCTCTATTTGACTTACTAGGTAGATATACGTGTGTATTTTTCTATAGATTTCAACAACTTCCAAGGACGAACAGCAGTAATTCAC-TTTTTAGAGTGATACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291824" ref_strand="+" ref_description="SGN-E291824 [cLET-7-E12]">
      <seq>tctgtcctcactcactccagacagtccataaaatactgggcagagtgctgccgcctctagtgtcggcactgatattgcatctgtgattgaaagtattcaaacagacaaagaagcttccggtgcttattagccaattgttgaggacgggagctctggtgtgaaagaaaacaatgctgcaaaacccagtaataatctaagccctatatcagaaccttatgaagatgcagactcaaaggattcagagttagacaaacctttgaattttgagcagtttagttcagcagcggaactggacgtacttggcgtggacaagttaaagtcagaacttcaagtgcctgggttgaagtgtggaggcaccctgcgagaacgtgcaggcaggcttttcttactcaaaaccacacctttggaaatgcttccaaagaagttgcttgctaagaagtaattttgtgctcgtctgttttgctatagtagctggttgtaattggaacctcatgttcagcttattctctgttttacttgctatgtaaatatgcgtgtgcatttttcaatatatttcaacaacttccaaggacgaacagtagtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="100364" stop="102759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100664" g_stop="100958" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100959" i_stop="102169" i_length="1211">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102170" g_stop="102459" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="585" r_length="290" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E291824" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100664" e_stop="100958"/>
          <exon e_start="102170" e_stop="102459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGCTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGTGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTGCTTCTGAGCCAATTGTTGTGGAGGGGAGCTCTGGTGTGAAAGAAAACAATGCTGCAAAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGAGTTAGAAAAACCTTTGAATTTTGAGCAGTTTAGTTCAGCAGCGGAACTGGAGGTATGCATCATCTCTCATATAGTATAGTTGATCTCCATTGCTTACTACATCTGTGTTGTTCAATATGTATCATTAAAGGCTTCCTCTGCTTGCTGTAGCAATTTGTTTTCAACTGGTTGTTAATCAAAATTAAGATTACAATGCTTCACCTTTTCACTTTGGCTAATTTACCCCCCCCCCCCCCCCCCCCCCGCGTGTGTCCCTTTCAGTTGTGGATGGCTCAAGATTGTTACTTGTTTACATGGCCTTCCCTGTGAGATCAATAGCAGTTAATAAATAATTATTTTGGTGTGTGTGTGTGTGTGGGCTAGTGGCTAAGTAGGAGAGTCCCAACACTTCTATAGCCTGCAGGCTGCACTGCAGGTAAACGTAACCTGTTTACAGTGAAACCCTTAAGAGGGTTAATAAACACCTCATCTGTCATGGTCCATACTTTTTTAATCATCTTAGCTGATGTCTGAGTTTAATTGTTATTTTTCTTCTGTTCTTGCATAACGAATGACATTGCTGCTTTTCTAATTTGTGTTTTAATGTCGATTCAGTGATATCGCTTCAATTACTAGTATAAAACCTCTTTTTGGCTTCAATGGGATGTTAACAAAGTTGCTGGAAAATGATTCTGAAGAAAATAAAAATAAAAAAAGGCAGGGAAGTCATTCTCTAGTATTCTTTGTTTGAAAAGAATTGGAGTTTAAATGAGAACAAGACCATTTCTTTTTCCTTACATTTGCAGCACTTCGGAGGAAATCTTTCCTGGGTCCAACAACTTTATTTTTTACTAAATGCATCAAAAAGTGTGAATAATTTACTTTCTGGTACTTGGTTTTCCATTTCCCCACAATCAAATGGTACCTATGTGTCCTTACTGCGAGTTAAAATCGGTTTTAGGGGGGAAAGGATGTGTGTCTTCTGTTTGTTGGTCTTCCGTTCTTGTTGGAACTGTGGCATTCGGGCATTGCTTGGTTCATCTGCCACTGCTAAGTTTGTACTCTTCGACTCTGATAACAGTATGGAAGTATGACATGAATAATTTTTTTTATATATATGCTATTTTAACTGGGACTTTATACTATGATTTTTGCATTGATTGTTGTGTGGTCTCTATGTTTTCCTCATCACCCGTAAGCTTGTGTTACTGTTCATTGGTGAATGCAGTAGTGTTTGTTACCAATAGTTCCTAGCTAAATGTATTTTTGATTTGGTTGTGTTAGGTACTCGGCATGGAGAAGTTAAAGTCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGAGGCACCCTGCAAGAACGTGCAGCCAGGCTTTTCTTACTCAAAACCACACCTTTGGAAATGCTTCCAAAGAAGTTGCTTGCTAAGAAGTAATTTTGTGCTCGTCTGTTTTGCTATTGTAGCTGGTTGTAATTGTAACCTCATGTTCAGCTTATTCTCTGTTTTACTTGCTATGTAAATATGCGTGTGCATTTTTCAATATATTTCAACAACTTCCAAGGACGAACAGTAGTAAT</genome_strand>
        <mrna_strand>TCTGTCCTCACTCACTCCAGACAGTCCATAAAATACTGGGCAGAGTGCTGCCGCCTCTAGTGTCGGCACTGATATTGCATCTGTGATTGAAAGTATTCAAACAGACAAAGAAGCTTCCGGTGCTTATTAGCCAATTGTTGAGGACGGGAGCTCTGGTGTGAAAGAAAACAATGCTGCAAAACCCAGTAATAATCTAAGCCCTATATCAGAACCTTATGAAGATGCAGACTCAAAGGATTCAGAGTTAGACAAACCTTTGAATTTTGAGCAGTTTAGTTCAGCAGCGGAACTGGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGGCGTGGACAAGTTAAAGTCAGAACTTCAAGTGCCTGGGTTGAAGTGTGGAGGCACCCTGCGAGAACGTGCAGGCAGGCTTTTCTTACTCAAAACCACACCTTTGGAAATGCTTCCAAAGAAGTTGCTTGCTAAGAAGTAATTTTGTGCTCGTCTGTTTTGCTATAGTAGCTGGTTGTAATTGGAACCTCATGTTCAGCTTATTCTCTGTTTTACTTGCTATGTAAATATGCGTGTGCATTTTTCAATATATTTCAACAACTTCCAAGGACGAACAGTAGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231513" ref_strand="+" ref_description="SGN-E231513 [cLED-4-D1]">
      <seq>ttgcatctgtgattgaaagtattcaaacagaaaaagaagcttctggtgcttctgagccaattgttgtggaggggagctctggtgtgaaagaaaacaatgctgcaaaacccagtaataatctaagccctatatcagaacctcaggaagatgcagtctcaaaggattcagagttagaaaaacctttgaattttgagcagtttagttcagcagcggaactggaggtactcggcatggagaagttaaagtcagaacttcaagtgcgtgggttgaagtgtggaggcaccctgcaagaacgtgcagccaggcttttcttactcaaaaccacacctttggaaatgcttccaaagaagttgcttgctaagaagtaattttgtgctcgtctgttttgctattgtagctggttgtaattgtaacctcatgttcagcttattctctgttttacttgctatgtaaatatgcgtgtgcatttttcaatatatttcaacaacttccaaggacgaacagtagtaattcacttttttagagtaataaaaggtgactaatgttcatttggttccgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="100438" stop="102809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100738" g_stop="100958" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100959" i_stop="102169" i_length="1211">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102170" g_stop="102506" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="558" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="559" polyA_stop="570"/>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E231513" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100738" e_stop="100958"/>
          <exon e_start="102170" e_stop="102506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATCTGTGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTGCTTCTGAGCCAATTGTTGTGGAGGGGAGCTCTGGTGTGAAAGAAAACAATGCTGCAAAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGAGTTAGAAAAACCTTTGAATTTTGAGCAGTTTAGTTCAGCAGCGGAACTGGAGGTATGCATCATCTCTCATATAGTATAGTTGATCTCCATTGCTTACTACATCTGTGTTGTTCAATATGTATCATTAAAGGCTTCCTCTGCTTGCTGTAGCAATTTGTTTTCAACTGGTTGTTAATCAAAATTAAGATTACAATGCTTCACCTTTTCACTTTGGCTAATTTACCCCCCCCCCCCCCCCCCCCCCGCGTGTGTCCCTTTCAGTTGTGGATGGCTCAAGATTGTTACTTGTTTACATGGCCTTCCCTGTGAGATCAATAGCAGTTAATAAATAATTATTTTGGTGTGTGTGTGTGTGTGGGCTAGTGGCTAAGTAGGAGAGTCCCAACACTTCTATAGCCTGCAGGCTGCACTGCAGGTAAACGTAACCTGTTTACAGTGAAACCCTTAAGAGGGTTAATAAACACCTCATCTGTCATGGTCCATACTTTTTTAATCATCTTAGCTGATGTCTGAGTTTAATTGTTATTTTTCTTCTGTTCTTGCATAACGAATGACATTGCTGCTTTTCTAATTTGTGTTTTAATGTCGATTCAGTGATATCGCTTCAATTACTAGTATAAAACCTCTTTTTGGCTTCAATGGGATGTTAACAAAGTTGCTGGAAAATGATTCTGAAGAAAATAAAAATAAAAAAAGGCAGGGAAGTCATTCTCTAGTATTCTTTGTTTGAAAAGAATTGGAGTTTAAATGAGAACAAGACCATTTCTTTTTCCTTACATTTGCAGCACTTCGGAGGAAATCTTTCCTGGGTCCAACAACTTTATTTTTTACTAAATGCATCAAAAAGTGTGAATAATTTACTTTCTGGTACTTGGTTTTCCATTTCCCCACAATCAAATGGTACCTATGTGTCCTTACTGCGAGTTAAAATCGGTTTTAGGGGGGAAAGGATGTGTGTCTTCTGTTTGTTGGTCTTCCGTTCTTGTTGGAACTGTGGCATTCGGGCATTGCTTGGTTCATCTGCCACTGCTAAGTTTGTACTCTTCGACTCTGATAACAGTATGGAAGTATGACATGAATAATTTTTTTTATATATATGCTATTTTAACTGGGACTTTATACTATGATTTTTGCATTGATTGTTGTGTGGTCTCTATGTTTTCCTCATCACCCGTAAGCTTGTGTTACTGTTCATTGGTGAATGCAGTAGTGTTTGTTACCAATAGTTCCTAGCTAAATGTATTTTTGATTTGGTTGTGTTAGGTACTCGGCATGGAGAAGTTAAAGTCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGAGGCACCCTGCAAGAACGTGCAGCCAGGCTTTTCTTACTCAAAACCACACCTTTGGAAATGCTTCCAAAGAAGTTGCTTGCTAAGAAGTAATTTTGTGCTCGTCTGTTTTGCTATTGTAGCTGGTTGTAATTGTAACCTCATGTTCAGCTTATTCTCTGTTTTACTTGCTATGTAAATATGCGTGTGCATTTTTCAATATATTTCAACAACTTCCAAGGACGAACAGTAGTAATTCACTTTTTTAGAGTAATAAAAGGTGACTAATGTTCATTTGGTTCCG</genome_strand>
        <mrna_strand>TTGCATCTGTGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTGCTTCTGAGCCAATTGTTGTGGAGGGGAGCTCTGGTGTGAAAGAAAACAATGCTGCAAAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGAGTTAGAAAAACCTTTGAATTTTGAGCAGTTTAGTTCAGCAGCGGAACTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCGGCATGGAGAAGTTAAAGTCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGAGGCACCCTGCAAGAACGTGCAGCCAGGCTTTTCTTACTCAAAACCACACCTTTGGAAATGCTTCCAAAGAAGTTGCTTGCTAAGAAGTAATTTTGTGCTCGTCTGTTTTGCTATTGTAGCTGGTTGTAATTGTAACCTCATGTTCAGCTTATTCTCTGTTTTACTTGCTATGTAAATATGCGTGTGCATTTTTCAATATATTTCAACAACTTCCAAGGACGAACAGTAGTAATTCACTTTTTTAGAGTAATAAAAGGTGACTAATGTTCATTTGGTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E714073" ref_strand="+" ref_description="SGN-E714073 [FB10BG07]">
      <seq>attgttgtggaggggagctttggtgtgaaagaaaacaatgctgcaaaacccagtaataatctaagccctatatcagaacctcaggaagatgcagtctcaaaggattcagagttagaaaaacctttgaattttgagcagtttagttcagcagcggaactggaggtactcggcatggagaagttaaagtcagaacttcaagtgcgtgggttgaagtgtggaggcaccctgcaagaacgtgcagccaggcttttcttactcaaaaccacacctttggaaatgcttccaaagaagttgcttgctaagaagtaattttgtgctcttctgttttgctattgtagctggttgtaattgtaacctcatgtttcaagtgtcagcttattctctgttttacttgctatgtaaatatgcgtgtgcatttttcaatatatttcaacaacttccaaggacgaacagtagtaattcacttttttagagtaataaaaggtgactaatgttcatttggttccgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="100497" stop="102809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100797" g_stop="100958" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100959" i_stop="102169" i_length="1211">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102170" g_stop="102506" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="507" r_length="345" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="522"/>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E714073" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100797" e_stop="100958"/>
          <exon e_start="102170" e_stop="102506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTGTGGAGGGGAGCTCTGGTGTGAAAGAAAACAATGCTGCAAAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGAGTTAGAAAAACCTTTGAATTTTGAGCAGTTTAGTTCAGCAGCGGAACTGGAGGTATGCATCATCTCTCATATAGTATAGTTGATCTCCATTGCTTACTACATCTGTGTTGTTCAATATGTATCATTAAAGGCTTCCTCTGCTTGCTGTAGCAATTTGTTTTCAACTGGTTGTTAATCAAAATTAAGATTACAATGCTTCACCTTTTCACTTTGGCTAATTTACCCCCCCCCCCCCCCCCCCCCCGCGTGTGTCCCTTTCAGTTGTGGATGGCTCAAGATTGTTACTTGTTTACATGGCCTTCCCTGTGAGATCAATAGCAGTTAATAAATAATTATTTTGGTGTGTGTGTGTGTGTGGGCTAGTGGCTAAGTAGGAGAGTCCCAACACTTCTATAGCCTGCAGGCTGCACTGCAGGTAAACGTAACCTGTTTACAGTGAAACCCTTAAGAGGGTTAATAAACACCTCATCTGTCATGGTCCATACTTTTTTAATCATCTTAGCTGATGTCTGAGTTTAATTGTTATTTTTCTTCTGTTCTTGCATAACGAATGACATTGCTGCTTTTCTAATTTGTGTTTTAATGTCGATTCAGTGATATCGCTTCAATTACTAGTATAAAACCTCTTTTTGGCTTCAATGGGATGTTAACAAAGTTGCTGGAAAATGATTCTGAAGAAAATAAAAATAAAAAAAGGCAGGGAAGTCATTCTCTAGTATTCTTTGTTTGAAAAGAATTGGAGTTTAAATGAGAACAAGACCATTTCTTTTTCCTTACATTTGCAGCACTTCGGAGGAAATCTTTCCTGGGTCCAACAACTTTATTTTTTACTAAATGCATCAAAAAGTGTGAATAATTTACTTTCTGGTACTTGGTTTTCCATTTCCCCACAATCAAATGGTACCTATGTGTCCTTACTGCGAGTTAAAATCGGTTTTAGGGGGGAAAGGATGTGTGTCTTCTGTTTGTTGGTCTTCCGTTCTTGTTGGAACTGTGGCATTCGGGCATTGCTTGGTTCATCTGCCACTGCTAAGTTTGTACTCTTCGACTCTGATAACAGTATGGAAGTATGACATGAATAATTTTTTTTATATATATGCTATTTTAACTGGGACTTTATACTATGATTTTTGCATTGATTGTTGTGTGGTCTCTATGTTTTCCTCATCACCCGTAAGCTTGTGTTACTGTTCATTGGTGAATGCAGTAGTGTTTGTTACCAATAGTTCCTAGCTAAATGTATTTTTGATTTGGTTGTGTTAGGTACTCGGCATGGAGAAGTTAAAGTCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGAGGCACCCTGCAAGAACGTGCAGCCAGGCTTTTCTTACTCAAAACCACACCTTTGGAAATGCTTCCAAAGAAGTTGCTTGCTAAGAAGTAATTTTGTGCTCGTCTGTTTTGCTATTGTAGCTGGTTGTAATTGTAACCTCA----T---GT-TCAGCTTATTCTCTGTTTTACTTGCTATGTAAATATGCGTGTGCATTTTTCAATATATTTCAACAACTTCCAAGGACGAACAGTAGTAATTCACTTTTTTAGAGTAATAAAAGGTGACTAATGTTCATTTGGTTCCG</genome_strand>
        <mrna_strand>ATTGTTGTGGAGGGGAGCTTTGGTGTGAAAGAAAACAATGCTGCAAAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGAGTTAGAAAAACCTTTGAATTTTGAGCAGTTTAGTTCAGCAGCGGAACTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCGGCATGGAGAAGTTAAAGTCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGAGGCACCCTGCAAGAACGTGCAGCCAGGCTTTTCTTACTCAAAACCACACCTTTGGAAATGCTTCCAAAGAAGTTGCTTGCTAAGAAGTAATTTTGTGCTCTTCTGTTTTGCTATTGTAGCTGGTTGTAATTGTAACCTCATGTTTCAAGTGTCAGCTTATTCTCTGTTTTACTTGCTATGTAAATATGCGTGTGCATTTTTCAATATATTTCAACAACTTCCAAGGACGAACAGTAGTAATTCACTTTTTTAGAGTAATAAAAGGTGACTAATGTTCATTTGGTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309844" ref_strand="+" ref_description="SGN-E309844 [cLEZ-10-M10]">
      <seq>ctttcttcaacttctaaagaatttttctgcggaactatacatacagctttctgtatatatagattcgtgatttcaaaaaccctaaaaatggtgcagttgtagagagagaaaattgagctatagcttggcgatgttggagaggtggtgcggaactcgaggtaaagattcccgtctttgtaactttaacccggactcgattctcaacattgactgtgcgagaaatgcctacgtcacctgaagaaaaccctaaccctaaggtgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="102968" stop="103831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103268" g_stop="103531" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E309844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103268" e_stop="103531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTCAACTTCTAAAGAATTTTTCTGCGGAACTATACATACAGCTTTCTGTATATATAGATTCGTGATTTCAAAAACCCTAAAAATGGTGCAGTTGTAGAGAGAGAAAATTGAGCTATAGCTTGGCGATGTTGGAGAGGTGGTGCGGAACTCGAGGTAAAGATTCCCGTCTTTGTAACTTTAACCCGGACTCGATTCTCAACATTGACTGTGCGAGAAATGCCTACGTCACCTGAAGAAAACCCTAACCCTAAGGTGAAAT</genome_strand>
        <mrna_strand>CTTTCTTCAACTTCTAAAGAATTTTTCTGCGGAACTATACATACAGCTTTCTGTATATATAGATTCGTGATTTCAAAAACCCTAAAAATGGTGCAGTTGTAGAGAGAGAAAATTGAGCTATAGCTTGGCGATGTTGGAGAGGTGGTGCGGAACTCGAGGTAAAGATTCCCGTCTTTGTAACTTTAACCCGGACTCGATTCTCAACATTGACTGTGCGAGAAATGCCTACGTCACCTGAAGAAAACCCTAACCCTAAGGTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248788" ref_strand="+" ref_description="SGN-E248788 [cLEG-5-M23]">
      <seq>aatagtattgatcaatgcgagtgtagaggggctcggttatttgggtgaaaagtgtgaaactttgcaggagttggaattgcatttctctgatgactttgcattgaagggattatttggcagtaggaatttgcagatactgaaattggttggttgtattgatggattatataattccatggtttcagatatagggttgacaattttagctcaagggtgtccgcgtttactgaagcttgagctggtaggatgtgagggaagttatgatgggatcaaagcaattgggcagtgctgtcagatgcttgaggaattgatactttgtgatcataggatggatggtgggtggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="+" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="103827" stop="104771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104127" g_stop="104471" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="+" ref_id="SGN-E248788" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104127" e_stop="104471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGTATTGATCAATGCGAGTGTAGAGGGGCTCGGTTATTTGGGTGAAAAGTGTGAAACTTTGCAGGAGTTGGAATTGCATTTCTCTGATGACTTTGCATTGAAGGGATTATTTGGCAGTAGGAATTTGCAGATACTGAAATTGGTTGGTTGTATTGATGGATTATATAATTCCATGGTTTCAGATATAGGGTTGACAATTTTAGCTCAAGGGTGTCCGCGTTTACTGAAGCTTGAGCTGGTAGGATGTGAGGGAAGTTATGATGGGATCAAAGCAATTGGGCAGTGCTGTCAGATGCTTGAGGAATTGATACTTTGTGATCATAGGATGGATGGTGGGTGGTT</genome_strand>
        <mrna_strand>AATAGTATTGATCAATGCGAGTGTAGAGGGGCTCGGTTATTTGGGTGAAAAGTGTGAAACTTTGCAGGAGTTGGAATTGCATTTCTCTGATGACTTTGCATTGAAGGGATTATTTGGCAGTAGGAATTTGCAGATACTGAAATTGGTTGGTTGTATTGATGGATTATATAATTCCATGGTTTCAGATATAGGGTTGACAATTTTAGCTCAAGGGTGTCCGCGTTTACTGAAGCTTGAGCTGGTAGGATGTGAGGGAAGTTATGATGGGATCAAAGCAATTGGGCAGTGCTGTCAGATGCTTGAGGAATTGATACTTTGTGATCATAGGATGGATGGTGGGTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542796" ref_strand="+" ref_description="SGN-E542796 [TUS-64-E13](-)">
      <seq>cttccaaccattcatattagttttcgtttcttcaactctaataaaatgttcatatttgttctcaaggtgtaatagtgttgtggaaaaatcaaataagcctacaagatatattaattaccattaacttgctctatatgaaaagtggtcatgttgtttctcaaccgtcttgacttaagatttaatcatttctatttgtggtgcagggaaggaaaatgatataacgtttaactaattaatgataatagtttaattgaatacattttagaggtttttagcttctttgtaattaatgcattaaaattcctagagatattaaaattcatgataattaattaatgctgatactttattgatgtgcatatttattacctctaaaactatttttattattgtgtcatactgaaattaagtcatgcttttaaacaataaattgccgaaatttttgtcctctactacaaaatgatgatatgcttgctgcttgcatttttattgttaatttttgttagcttgatacttaatttatagctaaagaggcaaagcattttaattatgctttgcacgtatgttcttctttccccactttctcagtccataaaagggctatatggacgcaattattatatgaaaaagaaaagtatatcttattgaagatacaaagcttacaaatcgtaatataaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="110621" stop="109332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110321" g_stop="109637" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E542796" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110321" e_stop="109637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCAACCATTCATATTAGTTTTCGTTTCTTCAACTCTAATAAAATGTTCATATTTGTTCTCAAGGTGTAATAGTGTTGTGGAAAAATCAAATAAGCCTACAAGATATATTAATTACCATTAACTTGCTCTATATGAAAAGTGGTCATGTTGTTTCTCAACCGTCTTGACTTAAGATTTAATCATTTCTATTTGTGGTGCAGGGAAGGAAAATGATATAACGTTTAACTAATTAATGATAATAGTTTAATTGAATACATTTTAGAGGTTTTTAGCTTCTTTGTAATTAATGCATTAAAATTCCTAGAGATATTAAAATTCATGATAATTAATTAATGCTGATACTTTATTGATGTGCATATTTATTACCTCTAAAACTATTTTTATTATTGTGTCATACTGAAATTAAGTCATGCTTTTAAACAATAAATTGCCGAAATTTTTGTCCTCTACTACAAAATGATGATATGCTTGCTGCTTGCATTTTTATTGTTAATTTTTGTTAGCTTGATACTTAATTTATAGCTAAAGAGGCAAAGCATTTTAATTATGCTTTGCACGTATGTTCTTCTTTCCCCACTTTCTCAGTCCATAAAAGGGCTATATGGACGCAATTATTATATGAAAAAGAAAAGTATATCTTATTTGAAGATACAAAGCTTACAAATCGTAATATAAAAAAGAA</genome_strand>
        <mrna_strand>CTTCCAACCATTCATATTAGTTTTCGTTTCTTCAACTCTAATAAAATGTTCATATTTGTTCTCAAGGTGTAATAGTGTTGTGGAAAAATCAAATAAGCCTACAAGATATATTAATTACCATTAACTTGCTCTATATGAAAAGTGGTCATGTTGTTTCTCAACCGTCTTGACTTAAGATTTAATCATTTCTATTTGTGGTGCAGGGAAGGAAAATGATATAACGTTTAACTAATTAATGATAATAGTTTAATTGAATACATTTTAGAGGTTTTTAGCTTCTTTGTAATTAATGCATTAAAATTCCTAGAGATATTAAAATTCATGATAATTAATTAATGCTGATACTTTATTGATGTGCATATTTATTACCTCTAAAACTATTTTTATTATTGTGTCATACTGAAATTAAGTCATGCTTTTAAACAATAAATTGCCGAAATTTTTGTCCTCTACTACAAAATGATGATATGCTTGCTGCTTGCATTTTTATTGTTAATTTTTGTTAGCTTGATACTTAATTTATAGCTAAAGAGGCAAAGCATTTTAATTATGCTTTGCACGTATGTTCTTCTTTCCCCACTTTCTCAGTCCATAAAAGGGCTATATGGACGCAATTATTATATGAAAAAGAAAAGTATATCTTA-TTGAAGATACAAAGCTTACAAATCGTAATATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542797" ref_strand="+" ref_description="SGN-E542797 [TUS-64-E13]">
      <seq>cgcaggcattcaccgccaatatccagaaaatggcggtgaatcagccgcggaagcaggggctagccgtgtggttggtcttgatgagtctacgattcaatcgtacagaaaaattgttgtcgataaaaacgaatcgagttgcccgatatgcctggcggagtacaatgctggagagatagcaaagtgtatgccggggtgtcaacattgcttccatattgattgtgttgataagtggttgaagttgaatactacttgtcctctttgtagaaagtgtctccttttctctaaattgcctaatttgtagcttcatgtctataaagatttccttttgctccaatatcatgtccacctattgtcttttattttttcaggtggaaggaatcgaactctcacgaacaaattggaagttcatataactaaccaactgagttgctatgatttctcatgtccatatattgtcataatttgacttgtaaacaaatttggattggatcggtgaaatttgaaagcttttttatcctctcacaaattgattataatctctttgcttcgaaaagaatgatcttctttcctttttagtctgttttaaaaaaatataacctctttctttttttggtaacattttaatttcagcttttcacgtgacatatttaagggcactagatcaaagagcaattttgtacatttaatctaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="111735" stop="110444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111435" g_stop="110744" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E542797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111435" e_stop="110744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGGCATTCACCGCCAATATCCAGAAAATGGCGGTGAATCAGCCGCGGAAGCAGGGGCTAGCCGTGTGGTTGGTCTTGATGAGTCTACGATTCAATCGTACAGAAAAATTGTTGTCGATAAAAACGAATCGAGTTGCCCGATATGCCTGGCGGAGTACAATGCTGGAGAGATAGCAAAGTGTATGCCGGGGTGTCAACATTGCTTCCATATTGATTGTGTTGATAAGTGGTTGAAGTTGAATACTACTTGTCCTCTTTGTAGAAAGTGTCTCCTTTTCTCTAAATTGCCTAATTTGTAGCTTCATGTCTATAAAGATTTCCTTTTGCTCCAATATCATGTCCACCTATTGTCTTTTATTTTTTCAGGTGGAAGGAATCGAACTCTCACGAACAAATTGGAAGTTCATATAACTAACCAACTGAGTTGCTATGATTTCTCATGTCCATATATTGTCATAATTTGACTTGTAAACAAATTTGGATTGGATCGGTGAAATTTGAAAGCTTTTTTATCCTCTCACAAATTGATTATAATCTCTTTGCTTCGAAAAGAATGATCTTCTTTCCTTTTTAGTCTGTTTTAAAAAAATATAACCTCTTTCTTTTTTTGGTAACATTTTAATTTCAGCTTTTCACGTGACATATTTAAGGGCACTAGATCAAAGAGCAATTTTGTACATTTAATCTAAC</genome_strand>
        <mrna_strand>CGCAGGCATTCACCGCCAATATCCAGAAAATGGCGGTGAATCAGCCGCGGAAGCAGGGGCTAGCCGTGTGGTTGGTCTTGATGAGTCTACGATTCAATCGTACAGAAAAATTGTTGTCGATAAAAACGAATCGAGTTGCCCGATATGCCTGGCGGAGTACAATGCTGGAGAGATAGCAAAGTGTATGCCGGGGTGTCAACATTGCTTCCATATTGATTGTGTTGATAAGTGGTTGAAGTTGAATACTACTTGTCCTCTTTGTAGAAAGTGTCTCCTTTTCTCTAAATTGCCTAATTTGTAGCTTCATGTCTATAAAGATTTCCTTTTGCTCCAATATCATGTCCACCTATTGTCTTTTATTTTTTCAGGTGGAAGGAATCGAACTCTCACGAACAAATTGGAAGTTCATATAACTAACCAACTGAGTTGCTATGATTTCTCATGTCCATATATTGTCATAATTTGACTTGTAAACAAATTTGGATTGGATCGGTGAAATTTGAAAGCTTTTTTATCCTCTCACAAATTGATTATAATCTCTTTGCTTCGAAAAGAATGATCTTCTTTCCTTTTTAGTCTGTTTTAAAAAAATATAACCTCTTTCTTTTTTTGGTAACATTTTAATTTCAGCTTTTCACGTGACATATTTAAGGGCACTAGATCAAAGAGCAATTTTGTACATTTAATCTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301394" ref_strand="+" ref_description="SGN-E301394 [cLEW-24-N14]">
      <seq>gcattcaccgccaatatccagaaaatggcggtgaatcagccgcggaagcaggggctagccgtgtggttggtcttgatgagtctacgattcaatcgtacagaaaaattgttgtcgataaaaacgaatcgagttgcccgatatgcctggcggagtacaatgctggagagatagcaaagtgtatgccggggtgtcaacattgcttccatattgattgtgttgataagtggttgaagttgaatactacttgtcctctttgtagaaagtgtctccttttctctaaattgcctaatttgtagcttcatgtctataaagatttccttttgctccaatatcatgtccacctattgtcttttattttttcaggtggaaggaatcgaactctcacgaacaaattggaagttcatataactaaccaactgagttgctatgatttctcatgtccatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="111730" stop="110685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111430" g_stop="110985" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E301394" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111430" e_stop="110985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTCACCGCCAATATCCAGAAAATGGCGGTGAATCAGCCGCGGAAGCAGGGGCTAGCCGTGTGGTTGGTCTTGATGAGTCTACGATTCAATCGTACAGAAAAATTGTTGTCGATAAAAACGAATCGAGTTGCCCGATATGCCTGGCGGAGTACAATGCTGGAGAGATAGCAAAGTGTATGCCGGGGTGTCAACATTGCTTCCATATTGATTGTGTTGATAAGTGGTTGAAGTTGAATACTACTTGTCCTCTTTGTAGAAAGTGTCTCCTTTTCTCTAAATTGCCTAATTTGTAGCTTCATGTCTATAAAGATTTCCTTTTGCTCCAATATCATGTCCACCTATTGTCTTTTATTTTTTCAGGTGGAAGGAATCGAACTCTCACGAACAAATTGGAAGTTCATATAACTAACCAACTGAGTTGCTATGATTTCTCATGTCCATAT</genome_strand>
        <mrna_strand>GCATTCACCGCCAATATCCAGAAAATGGCGGTGAATCAGCCGCGGAAGCAGGGGCTAGCCGTGTGGTTGGTCTTGATGAGTCTACGATTCAATCGTACAGAAAAATTGTTGTCGATAAAAACGAATCGAGTTGCCCGATATGCCTGGCGGAGTACAATGCTGGAGAGATAGCAAAGTGTATGCCGGGGTGTCAACATTGCTTCCATATTGATTGTGTTGATAAGTGGTTGAAGTTGAATACTACTTGTCCTCTTTGTAGAAAGTGTCTCCTTTTCTCTAAATTGCCTAATTTGTAGCTTCATGTCTATAAAGATTTCCTTTTGCTCCAATATCATGTCCACCTATTGTCTTTTATTTTTTCAGGTGGAAGGAATCGAACTCTCACGAACAAATTGGAAGTTCATATAACTAACCAACTGAGTTGCTATGATTTCTCATGTCCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549040" ref_strand="+" ref_description="SGN-E549040 [TUS-66-L24](-)">
      <seq>actttggctacttcttcaacgaaccttgctagccaaatggtatctttgtataattgtaaagtagataacactttatctattcctgtctcgtggactcctttgtatgaggcagttttttcaagtgaccttaataatgatcttgttttaacatgggatgaaccgaattgccaagaatgcgaagtagaaggacaactttgtgggttcaagaatgtaactagtggagaaattcaatgctttgatgttgctgggacaggcaatacaaaaggtatacaaatattccgaatagttgcactagccttagtgataccagccatcacatgttcattgggtgtgacatgttacatttgctatgagcaaagccgagacagccgccgctccgctgctctccagaacactactgccggtggagcagccgtagtaccacaaccggaaacgtcaattgggctggacgattcgacgatcgaatcgtacacaaaagttgttctaggtgaaagtaggagaattccagggccaaatcatggaatttgtccaatatgtttggctgagtatcatccaaaagagacagtgagatgcatacctgaatgtgaacatggttttcatgctgaatgcattgatgaatggttaaagattaatgggacttgtcctgtttgtagaaataatccttctcctgttcatgttaacttttcataacacatttttttccctccacatgtgatatgagagttttgtctgtatatgatatctattggaactaantattgtatctctcaatccaaacttgntatataaggtttgataacatcattttcgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="118749" stop="116839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118449" g_stop="118197" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118196" i_stop="117698" i_length="499">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117697" g_stop="117139" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="815" r_length="562" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E549040" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118449" e_stop="118197"/>
          <exon e_start="117697" e_stop="117139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTGGCTACTTCTTCAACGAACCTTGCTAGCCAAATGGTATCTTTGTATAATTGTAAAGTAGATAACACTTTATCTATTCCTGTCTCGTGGACTCCTTTGTATGAGGCAGTTTTTTCAAGTGACCTTAATAATGATCTTGTTTTAACATGGGATGAACCGAATTGCCAAGAATGCGAAGTAGAAGGACAACTTTGTGGGTTCAAGAATGTAACTAGTGGAGAAATTCAATGCTTTGATGTTGCTGGGACAGGTAAATATCCTTTTAATTCATACACTAGTATATTTTCCCCATTTACCAACCCTAATAAGTTGAATTTGTTGTTCTGTAATAAATATTGTTTGCTTTGAATCAAGTCCTCACGATTTTACCTTTTATGTTTTGGTAGGATACATTAGAGTTAAAAACTTATCCTCAATCTAATATAACAATACTGTTTCTTCATTCAAACTTTGAATTGATTAATTAATACATTGAGAAAGTAATTAGTTTAGCTGAGAGTATTCAACCAAAGTTATTTATGTGGCTAAGGACAATTTGACTTTTATAGTAAGTTCATTTTGAAATGTCAACTTGTCTCTTCTTATATAGTAATCTAATGTCAAACTTTATGAAGGAATAATTAGGACATTTCTATTTAAATGCACCAATACTTTAAAATAGGCTGAGATCGTGCCTTTAAAAGAAATTAATAAATTCAGAATGAACATTTTTTTGTCTTAACGTAACCATAATTAATTTTTACTCACAGGCAATACAAAAGGTATACAAATATTCCGAATAGTTGCACTAGCCTTAGTGATACCAGCCATCACATGTTCATTGGGTGTGACATGTTACATTTGCTATGAGCAAAGCCGAGACAGCCGCCGCTCCGCTGCTCTCCAGAACACTACTGCCGGTGGAGCAGCCGTAGTACCACAACCGGAAACGTCAATTGGGCTGGACGATTCGACGATCGAATCGTACACAAAAGTTGTTCTAGGTGAAAGTAGGAGAATTCCAGGGCCAAATCATGGAATTTGTCCAATATGTTTGGCTGAGTATCATCCAAAAGAGACAGTGAGATGCATACCTGAATGTGAACATGGTTTTCATGCTGAATGCATTGATGAATGGTTAAAGATTAATGGGACTTGTCCTGTTTGTAGAAATAATCCTTCTCCTGTTCATGTTAACTTTTCATAACACATTTTTTTCCCT-CACATGTGATATGAGAGTTTTGTCTGTATATGATATCTATTGGAACTAA-TATTGTATCTCTCAATCCAAACTTG-TATATAAGGTTTGATAACATCATTTTCGTAAGA</genome_strand>
        <mrna_strand>ACTTTGGCTACTTCTTCAACGAACCTTGCTAGCCAAATGGTATCTTTGTATAATTGTAAAGTAGATAACACTTTATCTATTCCTGTCTCGTGGACTCCTTTGTATGAGGCAGTTTTTTCAAGTGACCTTAATAATGATCTTGTTTTAACATGGGATGAACCGAATTGCCAAGAATGCGAAGTAGAAGGACAACTTTGTGGGTTCAAGAATGTAACTAGTGGAGAAATTCAATGCTTTGATGTTGCTGGGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATACAAAAGGTATACAAATATTCCGAATAGTTGCACTAGCCTTAGTGATACCAGCCATCACATGTTCATTGGGTGTGACATGTTACATTTGCTATGAGCAAAGCCGAGACAGCCGCCGCTCCGCTGCTCTCCAGAACACTACTGCCGGTGGAGCAGCCGTAGTACCACAACCGGAAACGTCAATTGGGCTGGACGATTCGACGATCGAATCGTACACAAAAGTTGTTCTAGGTGAAAGTAGGAGAATTCCAGGGCCAAATCATGGAATTTGTCCAATATGTTTGGCTGAGTATCATCCAAAAGAGACAGTGAGATGCATACCTGAATGTGAACATGGTTTTCATGCTGAATGCATTGATGAATGGTTAAAGATTAATGGGACTTGTCCTGTTTGTAGAAATAATCCTTCTCCTGTTCATGTTAACTTTTCATAACACATTTTTTTCCCTCCACATGTGATATGAGAGTTTTGTCTGTATATGATATCTATTGGAACTAANTATTGTATCTCTCAATCCAAACTTGNTATATAAGGTTTGATAACATCATTTTCGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544464" ref_strand="+" ref_description="SGN-E544464 [TUS-66-M24](-)">
      <seq>ccttgctagccaaagggtatctttgtataattgtaaagtagataacactttatctattcctgtctcgtggactcctttgtatgaggcagttttttcaagtgaccttaataatgatcttgttttaacatgggatgaaccgaattgccaagaatgcgaagtagaaggacaactttgtgggttcaagaatgtaactagtggagaaattcaatgctttgatgttgctgggacaggcaatacaaaaggtatacaaatattccgaatagttgcactagccttagtgataccagccatcacatgttcattgggtgtgacatgttacatttgctatgagcaaagccgagacagccgccgctccgctgctctccagaacactactgccggtggagcagccgtagtaccacaaccggaaacgtcaattgggctggacgattcgacgatcgaatcgtacacaaaagttgttctaggtgaaagtaggagaattccagggccaaatcatggaatttgtccaatatgtttggctgagtatcatccaaaagagacagtgagatgcatacctgaatgtgaacatggttttcatgctgaatgcattgatgaatggttaaagattaatgggacttgtcctgtttgtagaaataatccttctcctgttcatgttaacttttcataacacatttttttccctcnacatgtgatatgagagttttgtctgtatatgatatctattggaactacatattgtatctctcaatccaacacttgntatataaggtttgataacatcattttcgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="118726" stop="116839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118426" g_stop="118197" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118196" i_stop="117698" i_length="499">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117697" g_stop="117139" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="793" r_length="563" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E544464" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118426" e_stop="118197"/>
          <exon e_start="117697" e_stop="117139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGCTAGCCAAATGGTATCTTTGTATAATTGTAAAGTAGATAACACTTTATCTATTCCTGTCTCGTGGACTCCTTTGTATGAGGCAGTTTTTTCAAGTGACCTTAATAATGATCTTGTTTTAACATGGGATGAACCGAATTGCCAAGAATGCGAAGTAGAAGGACAACTTTGTGGGTTCAAGAATGTAACTAGTGGAGAAATTCAATGCTTTGATGTTGCTGGGACAGGTAAATATCCTTTTAATTCATACACTAGTATATTTTCCCCATTTACCAACCCTAATAAGTTGAATTTGTTGTTCTGTAATAAATATTGTTTGCTTTGAATCAAGTCCTCACGATTTTACCTTTTATGTTTTGGTAGGATACATTAGAGTTAAAAACTTATCCTCAATCTAATATAACAATACTGTTTCTTCATTCAAACTTTGAATTGATTAATTAATACATTGAGAAAGTAATTAGTTTAGCTGAGAGTATTCAACCAAAGTTATTTATGTGGCTAAGGACAATTTGACTTTTATAGTAAGTTCATTTTGAAATGTCAACTTGTCTCTTCTTATATAGTAATCTAATGTCAAACTTTATGAAGGAATAATTAGGACATTTCTATTTAAATGCACCAATACTTTAAAATAGGCTGAGATCGTGCCTTTAAAAGAAATTAATAAATTCAGAATGAACATTTTTTTGTCTTAACGTAACCATAATTAATTTTTACTCACAGGCAATACAAAAGGTATACAAATATTCCGAATAGTTGCACTAGCCTTAGTGATACCAGCCATCACATGTTCATTGGGTGTGACATGTTACATTTGCTATGAGCAAAGCCGAGACAGCCGCCGCTCCGCTGCTCTCCAGAACACTACTGCCGGTGGAGCAGCCGTAGTACCACAACCGGAAACGTCAATTGGGCTGGACGATTCGACGATCGAATCGTACACAAAAGTTGTTCTAGGTGAAAGTAGGAGAATTCCAGGGCCAAATCATGGAATTTGTCCAATATGTTTGGCTGAGTATCATCCAAAAGAGACAGTGAGATGCATACCTGAATGTGAACATGGTTTTCATGCTGAATGCATTGATGAATGGTTAAAGATTAATGGGACTTGTCCTGTTTGTAGAAATAATCCTTCTCCTGTTCATGTTAACTTTTCATAACACATTTTTTTCCCTC-ACATGTGATATGAGAGTTTTGTCTGTATATGATATCTATTGGAACTA-ATATTGTATCTCTCAATCCAA-ACTTG-TATATAAGGTTTGATAACATCATTTTCGTAAGA</genome_strand>
        <mrna_strand>CCTTGCTAGCCAAAGGGTATCTTTGTATAATTGTAAAGTAGATAACACTTTATCTATTCCTGTCTCGTGGACTCCTTTGTATGAGGCAGTTTTTTCAAGTGACCTTAATAATGATCTTGTTTTAACATGGGATGAACCGAATTGCCAAGAATGCGAAGTAGAAGGACAACTTTGTGGGTTCAAGAATGTAACTAGTGGAGAAATTCAATGCTTTGATGTTGCTGGGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATACAAAAGGTATACAAATATTCCGAATAGTTGCACTAGCCTTAGTGATACCAGCCATCACATGTTCATTGGGTGTGACATGTTACATTTGCTATGAGCAAAGCCGAGACAGCCGCCGCTCCGCTGCTCTCCAGAACACTACTGCCGGTGGAGCAGCCGTAGTACCACAACCGGAAACGTCAATTGGGCTGGACGATTCGACGATCGAATCGTACACAAAAGTTGTTCTAGGTGAAAGTAGGAGAATTCCAGGGCCAAATCATGGAATTTGTCCAATATGTTTGGCTGAGTATCATCCAAAAGAGACAGTGAGATGCATACCTGAATGTGAACATGGTTTTCATGCTGAATGCATTGATGAATGGTTAAAGATTAATGGGACTTGTCCTGTTTGTAGAAATAATCCTTCTCCTGTTCATGTTAACTTTTCATAACACATTTTTTTCCCTCNACATGTGATATGAGAGTTTTGTCTGTATATGATATCTATTGGAACTACATATTGTATCTCTCAATCCAACACTTGNTATATAAGGTTTGATAACATCATTTTCGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544423" ref_strand="+" ref_description="SGN-E544423 [TUS-66-L24]">
      <seq>cgcgatatcaactacctcatgcaagaaattcaactctacgatcaatttgattgtcttcctaaacggcttactaattttcaacttccttcttcttctgtcctcaagccagtttactatcgaaactacactttcttgatttgttcgacagatttggtcatgtctttcaatgtcattagttgtatgagtaattccactatctctactttggctacttcttcaacgaaccttgctagccaaatggtatctttgtataattgtaaagtagataacactttatctattcctgtctcgtggactcctttgtatgaggcagttttttcaagtgaccttaataatgatcttgttttaacatgggatgaaccgaattgccaagaatgcgaagtagaaggacaactttgtgggttcaagaatgtaactagtggagaaattcaatgctttgatgttgctgggacaggcaatacaaaaggtatacaaatattccgaatagttgcactagccttagtgataccagccatcacatgttcattgggtgtgacatgttacatttgctatgagcaaagccgagacagccgccgctccgctgctctccagaacactactgccggtggagcagccgtagtaccacaaccggaaacgtcaattgggctggacgattcgacgatcgaatcgtacacaaaagttgttctaggtgaaagtaggagaaattcagggccaaatcatggaatttgtccaaatatgttggctgagtatcatccaaaagagacagtgagatgcatacctgaatgtgaacatggttttcatgctgaatgcattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="118950" stop="117037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118650" g_stop="118197" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118196" i_stop="117698" i_length="499">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117697" g_stop="117337" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="815" r_length="361" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E544423" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118650" e_stop="118197"/>
          <exon e_start="117697" e_stop="117337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGATATCAACTACCTCATGCAAGAAATTCAACTCTACGATCAATTTGATTGTCTTCCTAAACGGCTTACTAATTTTCAACTTCCTTCTTCTTCTGTCCTCAAGCCAGTTTACTATCGAAACTACACTTTCTTGATTTGTTCGACAGATTTGGTCATGTCTTTCAATGTCATTAGTTGTATGAGTAATTCCACTATCTCTACTTTGGCTACTTCTTCAACGAACCTTGCTAGCCAAATGGTATCTTTGTATAATTGTAAAGTAGATAACACTTTATCTATTCCTGTCTCGTGGACTCCTTTGTATGAGGCAGTTTTTTCAAGTGACCTTAATAATGATCTTGTTTTAACATGGGATGAACCGAATTGCCAAGAATGCGAAGTAGAAGGACAACTTTGTGGGTTCAAGAATGTAACTAGTGGAGAAATTCAATGCTTTGATGTTGCTGGGACAGGTAAATATCCTTTTAATTCATACACTAGTATATTTTCCCCATTTACCAACCCTAATAAGTTGAATTTGTTGTTCTGTAATAAATATTGTTTGCTTTGAATCAAGTCCTCACGATTTTACCTTTTATGTTTTGGTAGGATACATTAGAGTTAAAAACTTATCCTCAATCTAATATAACAATACTGTTTCTTCATTCAAACTTTGAATTGATTAATTAATACATTGAGAAAGTAATTAGTTTAGCTGAGAGTATTCAACCAAAGTTATTTATGTGGCTAAGGACAATTTGACTTTTATAGTAAGTTCATTTTGAAATGTCAACTTGTCTCTTCTTATATAGTAATCTAATGTCAAACTTTATGAAGGAATAATTAGGACATTTCTATTTAAATGCACCAATACTTTAAAATAGGCTGAGATCGTGCCTTTAAAAGAAATTAATAAATTCAGAATGAACATTTTTTTGTCTTAACGTAACCATAATTAATTTTTACTCACAGGCAATACAAAAGGTATACAAATATTCCGAATAGTTGCACTAGCCTTAGTGATACCAGCCATCACATGTTCATTGGGTGTGACATGTTACATTTGCTATGAGCAAAGCCGAGACAGCCGCCGCTCCGCTGCTCTCCAGAACACTACTGCCGGTGGAGCAGCCGTAGTACCACAACCGGAAACGTCAATTGGGCTGGACGATTCGACGATCGAATCGTACACAAAAGTTGTTCTAGGTGAAAGTAGGAGAATTCCAGGGCCAAATCATGGAATTTGTCC-AATATGTTTGGCTGAGTATCATCCAAAAGAGACAGTGAGATGCATACCTGAATGTGAACATGGTTTTCATGCTGAATGCATTGA</genome_strand>
        <mrna_strand>CGCGATATCAACTACCTCATGCAAGAAATTCAACTCTACGATCAATTTGATTGTCTTCCTAAACGGCTTACTAATTTTCAACTTCCTTCTTCTTCTGTCCTCAAGCCAGTTTACTATCGAAACTACACTTTCTTGATTTGTTCGACAGATTTGGTCATGTCTTTCAATGTCATTAGTTGTATGAGTAATTCCACTATCTCTACTTTGGCTACTTCTTCAACGAACCTTGCTAGCCAAATGGTATCTTTGTATAATTGTAAAGTAGATAACACTTTATCTATTCCTGTCTCGTGGACTCCTTTGTATGAGGCAGTTTTTTCAAGTGACCTTAATAATGATCTTGTTTTAACATGGGATGAACCGAATTGCCAAGAATGCGAAGTAGAAGGACAACTTTGTGGGTTCAAGAATGTAACTAGTGGAGAAATTCAATGCTTTGATGTTGCTGGGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATACAAAAGGTATACAAATATTCCGAATAGTTGCACTAGCCTTAGTGATACCAGCCATCACATGTTCATTGGGTGTGACATGTTACATTTGCTATGAGCAAAGCCGAGACAGCCGCCGCTCCGCTGCTCTCCAGAACACTACTGCCGGTGGAGCAGCCGTAGTACCACAACCGGAAACGTCAATTGGGCTGGACGATTCGACGATCGAATCGTACACAAAAGTTGTTCTAGGTGAAAGTAGGAGAAATTCAGGGCCAAATCATGGAATTTGTCCAAATATG-TTGGCTGAGTATCATCCAAAAGAGACAGTGAGATGCATACCTGAATGTGAACATGGTTTTCATGCTGAATGCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544465" ref_strand="+" ref_description="SGN-E544465 [TUS-66-M24]">
      <seq>cgcgatatcaactacctcatgcaagaaattcaactctacgatcaatttgattgtcttcctaaacggcttactaattttcaacttccttcttcttctgtcctcaagccagtttactatcgaaactacactttcttgatttgttcgacagatttggtcatgtctttcaatgtcattagttgtatgagtaattccactatctctactttggctacttcttcaacgaaccttgctagccaaatggtatctttgtataattgtaaagtagataacactttatctattcctgtctcgtggactcctttgtatgaggcagttttttcaagtgaccttaataatgatcttgttttaacatgggatgaaccgaattgccaagaatgcgaagtagaaggacaactttgtgggttcaagaatgtaactagtggagaaattcaatgctttgatgttgctgggacaggcaatacaaaaggtatacaaatattccgaatagttgcactagccttagtgataccagccatcacatgttcattgggtgtgacatgttacatttgctatgagcaaagccgagacagccgccgctccgctgctctccagaacactactgccggtggagcagccgtagtaccacaaccggaaacgtcaattgggctggacgattcgacgatcgaatcgtacacaaaagttgttctaggtgaaagtaggagaattccagggccaaatcatgggatttgtccaatatgtttggctgagtatcatcccaaagagacagtgagatgcatacctgaatgtgaacatggntttcatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="118950" stop="117046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118650" g_stop="118197" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118196" i_stop="117698" i_length="499">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117697" g_stop="117346" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="806" r_length="352" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E544465" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118650" e_stop="118197"/>
          <exon e_start="117697" e_stop="117346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGATATCAACTACCTCATGCAAGAAATTCAACTCTACGATCAATTTGATTGTCTTCCTAAACGGCTTACTAATTTTCAACTTCCTTCTTCTTCTGTCCTCAAGCCAGTTTACTATCGAAACTACACTTTCTTGATTTGTTCGACAGATTTGGTCATGTCTTTCAATGTCATTAGTTGTATGAGTAATTCCACTATCTCTACTTTGGCTACTTCTTCAACGAACCTTGCTAGCCAAATGGTATCTTTGTATAATTGTAAAGTAGATAACACTTTATCTATTCCTGTCTCGTGGACTCCTTTGTATGAGGCAGTTTTTTCAAGTGACCTTAATAATGATCTTGTTTTAACATGGGATGAACCGAATTGCCAAGAATGCGAAGTAGAAGGACAACTTTGTGGGTTCAAGAATGTAACTAGTGGAGAAATTCAATGCTTTGATGTTGCTGGGACAGGTAAATATCCTTTTAATTCATACACTAGTATATTTTCCCCATTTACCAACCCTAATAAGTTGAATTTGTTGTTCTGTAATAAATATTGTTTGCTTTGAATCAAGTCCTCACGATTTTACCTTTTATGTTTTGGTAGGATACATTAGAGTTAAAAACTTATCCTCAATCTAATATAACAATACTGTTTCTTCATTCAAACTTTGAATTGATTAATTAATACATTGAGAAAGTAATTAGTTTAGCTGAGAGTATTCAACCAAAGTTATTTATGTGGCTAAGGACAATTTGACTTTTATAGTAAGTTCATTTTGAAATGTCAACTTGTCTCTTCTTATATAGTAATCTAATGTCAAACTTTATGAAGGAATAATTAGGACATTTCTATTTAAATGCACCAATACTTTAAAATAGGCTGAGATCGTGCCTTTAAAAGAAATTAATAAATTCAGAATGAACATTTTTTTGTCTTAACGTAACCATAATTAATTTTTACTCACAGGCAATACAAAAGGTATACAAATATTCCGAATAGTTGCACTAGCCTTAGTGATACCAGCCATCACATGTTCATTGGGTGTGACATGTTACATTTGCTATGAGCAAAGCCGAGACAGCCGCCGCTCCGCTGCTCTCCAGAACACTACTGCCGGTGGAGCAGCCGTAGTACCACAACCGGAAACGTCAATTGGGCTGGACGATTCGACGATCGAATCGTACACAAAAGTTGTTCTAGGTGAAAGTAGGAGAATTCCAGGGCCAAATCATGGAATTTGTCCAATATGTTTGGCTGAGTATCATCCAAAAGAGACAGTGAGATGCATACCTGAATGTGAACATGGTTTTCATGCTGA</genome_strand>
        <mrna_strand>CGCGATATCAACTACCTCATGCAAGAAATTCAACTCTACGATCAATTTGATTGTCTTCCTAAACGGCTTACTAATTTTCAACTTCCTTCTTCTTCTGTCCTCAAGCCAGTTTACTATCGAAACTACACTTTCTTGATTTGTTCGACAGATTTGGTCATGTCTTTCAATGTCATTAGTTGTATGAGTAATTCCACTATCTCTACTTTGGCTACTTCTTCAACGAACCTTGCTAGCCAAATGGTATCTTTGTATAATTGTAAAGTAGATAACACTTTATCTATTCCTGTCTCGTGGACTCCTTTGTATGAGGCAGTTTTTTCAAGTGACCTTAATAATGATCTTGTTTTAACATGGGATGAACCGAATTGCCAAGAATGCGAAGTAGAAGGACAACTTTGTGGGTTCAAGAATGTAACTAGTGGAGAAATTCAATGCTTTGATGTTGCTGGGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATACAAAAGGTATACAAATATTCCGAATAGTTGCACTAGCCTTAGTGATACCAGCCATCACATGTTCATTGGGTGTGACATGTTACATTTGCTATGAGCAAAGCCGAGACAGCCGCCGCTCCGCTGCTCTCCAGAACACTACTGCCGGTGGAGCAGCCGTAGTACCACAACCGGAAACGTCAATTGGGCTGGACGATTCGACGATCGAATCGTACACAAAAGTTGTTCTAGGTGAAAGTAGGAGAATTCCAGGGCCAAATCATGGGATTTGTCCAATATGTTTGGCTGAGTATCATCCCAAAGAGACAGTGAGATGCATACCTGAATGTGAACATGGNTTTCATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308083" ref_strand="+" ref_description="SGN-E308083 [cLEY-14-L14]">
      <seq>gcgatatcaactacctcatgcaagaaattcaactctacgatcaatttgattgtcttcctaaacggcttactaattttcaacttccttcttcttctgtcctcaagccagtttactatcgaaactacactttcttgatttgttcgacagatttggtcatgtctttcaatgtcattagttgtatgagtaattccactatctctactttggctacttcttcaacgaaccttgctagccaaatggtatctttgtataattgtaaagtagataacactttatctattcctgtctcgtggactcctttgtatgaggcagttttttcaagtgaccttaataatgatcttgttttaacatgggatgaaccgaattgccaagaatgcgaagtagaaggacaactttgtgggttcaagaatgtaactagtggagaaattcaatgctttgatgttgctgggacaggcaatacaaaaagtatacaaatattccgaatagttgcactagccttagtgatnccnnccatcacatgttcattgggtgtgacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="118949" stop="117312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118649" g_stop="118197" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118196" i_stop="117698" i_length="499">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117697" g_stop="117612" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="539" r_length="86" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E308083" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118649" e_stop="118197"/>
          <exon e_start="117697" e_stop="117612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATATCAACTACCTCATGCAAGAAATTCAACTCTACGATCAATTTGATTGTCTTCCTAAACGGCTTACTAATTTTCAACTTCCTTCTTCTTCTGTCCTCAAGCCAGTTTACTATCGAAACTACACTTTCTTGATTTGTTCGACAGATTTGGTCATGTCTTTCAATGTCATTAGTTGTATGAGTAATTCCACTATCTCTACTTTGGCTACTTCTTCAACGAACCTTGCTAGCCAAATGGTATCTTTGTATAATTGTAAAGTAGATAACACTTTATCTATTCCTGTCTCGTGGACTCCTTTGTATGAGGCAGTTTTTTCAAGTGACCTTAATAATGATCTTGTTTTAACATGGGATGAACCGAATTGCCAAGAATGCGAAGTAGAAGGACAACTTTGTGGGTTCAAGAATGTAACTAGTGGAGAAATTCAATGCTTTGATGTTGCTGGGACAGGTAAATATCCTTTTAATTCATACACTAGTATATTTTCCCCATTTACCAACCCTAATAAGTTGAATTTGTTGTTCTGTAATAAATATTGTTTGCTTTGAATCAAGTCCTCACGATTTTACCTTTTATGTTTTGGTAGGATACATTAGAGTTAAAAACTTATCCTCAATCTAATATAACAATACTGTTTCTTCATTCAAACTTTGAATTGATTAATTAATACATTGAGAAAGTAATTAGTTTAGCTGAGAGTATTCAACCAAAGTTATTTATGTGGCTAAGGACAATTTGACTTTTATAGTAAGTTCATTTTGAAATGTCAACTTGTCTCTTCTTATATAGTAATCTAATGTCAAACTTTATGAAGGAATAATTAGGACATTTCTATTTAAATGCACCAATACTTTAAAATAGGCTGAGATCGTGCCTTTAAAAGAAATTAATAAATTCAGAATGAACATTTTTTTGTCTTAACGTAACCATAATTAATTTTTACTCACAGGCAATACAAAAGGTATACAAATATTCCGAATAGTTGCACTAGCCTTAGTGATACCAGCCATCACATGTTCATTGGGTGTGACATGT</genome_strand>
        <mrna_strand>GCGATATCAACTACCTCATGCAAGAAATTCAACTCTACGATCAATTTGATTGTCTTCCTAAACGGCTTACTAATTTTCAACTTCCTTCTTCTTCTGTCCTCAAGCCAGTTTACTATCGAAACTACACTTTCTTGATTTGTTCGACAGATTTGGTCATGTCTTTCAATGTCATTAGTTGTATGAGTAATTCCACTATCTCTACTTTGGCTACTTCTTCAACGAACCTTGCTAGCCAAATGGTATCTTTGTATAATTGTAAAGTAGATAACACTTTATCTATTCCTGTCTCGTGGACTCCTTTGTATGAGGCAGTTTTTTCAAGTGACCTTAATAATGATCTTGTTTTAACATGGGATGAACCGAATTGCCAAGAATGCGAAGTAGAAGGACAACTTTGTGGGTTCAAGAATGTAACTAGTGGAGAAATTCAATGCTTTGATGTTGCTGGGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATACAAAAAGTATACAAATATTCCGAATAGTTGCACTAGCCTTAGTGATNCCNNCCATCACATGTTCATTGGGTGTGACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306243" ref_strand="+" ref_description="SGN-E306243 [cLEY-13-F12]">
      <seq>gtaattgccccctggattccatttgtggaaataatcgttttgacatacgatttccttttggattagaagagccttgtacatataatcctagtttcaatattaaatgcaataatcaaggcagagcaattttaagtcttcctggtgcaggggatttctatgtacgcgatatcaactacctcatgcaagaaattcaactctacgatcaatttgattgtcttcctaaacggcttactaattttcaacttccttcttcttctgtcctcaagccagtttactatcgaaactacactttcttgatttgttcgacagatttggtcatgtctttcaatgtcattagttgtatgagtaattccactatctctactttggctacttcttcaacgaaccttgctagccaaatggtatctttgtataattgtaaagtagataacactttatctattcctgtctcgtggactcctttgtatgaggcagttttttcaagtgaccttaataatgatcttgttttaacatgggatgaaccgaattgccaagaatgcgaagtagaaggacaactttgtgggttcaagaatgtaactagtggagaaattcaatgctttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="119111" stop="117910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118811" g_stop="118210" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E306243" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118811" e_stop="118210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTGCCCCCTGGATTCCATTTGTGGAAATAATCGTTTTGACATACGATTTCCTTTTGGATTAGAAGAGCCTTGTACATATAATCCTAGTTTCAATATTAAATGCAATAATCAAGGCAGAGCAATTTTAAGTCTTCCTGGTGCAGGGGATTTCTATGTACGCGATATCAACTACCTCATGCAAGAAATTCAACTCTACGATCAATTTGATTGTCTTCCTAAACGGCTTACTAATTTTCAACTTCCTTCTTCTTCTGTCCTCAAGCCAGTTTACTATCGAAACTACACTTTCTTGATTTGTTCGACAGATTTGGTCATGTCTTTCAATGTCATTAGTTGTATGAGTAATTCCACTATCTCTACTTTGGCTACTTCTTCAACGAACCTTGCTAGCCAAATGGTATCTTTGTATAATTGTAAAGTAGATAACACTTTATCTATTCCTGTCTCGTGGACTCCTTTGTATGAGGCAGTTTTTTCAAGTGACCTTAATAATGATCTTGTTTTAACATGGGATGAACCGAATTGCCAAGAATGCGAAGTAGAAGGACAACTTTGTGGGTTCAAGAATGTAACTAGTGGAGAAATTCAATGCTTTGAT</genome_strand>
        <mrna_strand>GTAATTGCCCCCTGGATTCCATTTGTGGAAATAATCGTTTTGACATACGATTTCCTTTTGGATTAGAAGAGCCTTGTACATATAATCCTAGTTTCAATATTAAATGCAATAATCAAGGCAGAGCAATTTTAAGTCTTCCTGGTGCAGGGGATTTCTATGTACGCGATATCAACTACCTCATGCAAGAAATTCAACTCTACGATCAATTTGATTGTCTTCCTAAACGGCTTACTAATTTTCAACTTCCTTCTTCTTCTGTCCTCAAGCCAGTTTACTATCGAAACTACACTTTCTTGATTTGTTCGACAGATTTGGTCATGTCTTTCAATGTCATTAGTTGTATGAGTAATTCCACTATCTCTACTTTGGCTACTTCTTCAACGAACCTTGCTAGCCAAATGGTATCTTTGTATAATTGTAAAGTAGATAACACTTTATCTATTCCTGTCTCGTGGACTCCTTTGTATGAGGCAGTTTTTTCAAGTGACCTTAATAATGATCTTGTTTTAACATGGGATGAACCGAATTGCCAAGAATGCGAAGTAGAAGGACAACTTTGTGGGTTCAAGAATGTAACTAGTGGAGAAATTCAATGCTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301756" ref_strand="+" ref_description="SGN-E301756 [cLEX-9-L12]">
      <seq>ttccttcttcttctgtcctcaagccagtttactatcgaaactacactttcttgatttgttcgacagatttggtcatgtctttcaatgtcattagttgtatgagtaattccactatctctactttggctacttcttcaacgaaccttgctagccaaatggtatctttgtataattgtaaagtagataacactttatctattcctgtctcgtggactcctttgtatgaagcagttttttcaagtgaccttaataatgatcttgttttaacatgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0108J06-SYeCc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0108J06.1" temp_strand="-" temp_description="C01HBa0108J06.1  AC225021.1 htgs_phase:3 submitted_to_sgn_as:Contig4 sequenced_by:agencourt upload_account_name:agencourt-bacs 021808.assem.ace.2 from 34 to 122867">
        <position start="118868" stop="117994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118568" g_stop="118294" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0108J06.1" gen_strand="-" ref_id="SGN-E301756" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0108J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118568" e_stop="118294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCTTCTTCTGTCCTCAAGCCAGTTTACTATCGAAACTACACTTTCTTGATTTGTTCGACAGATTTGGTCATGTCTTTCAATGTCATTAGTTGTATGAGTAATTCCACTATCTCTACTTTGGCTACTTCTTCAACGAACCTTGCTAGCCAAATGGTATCTTTGTATAATTGTAAAGTAGATAACACTTTATCTATTCCTGTCTCGTGGACTCCTTTGTATGAGGCAGTTTTTTCAAGTGACCTTAATAATGATCTTGTTTTAACATGGGAT</genome_strand>
        <mrna_strand>TTCCTTCTTCTTCTGTCCTCAAGCCAGTTTACTATCGAAACTACACTTTCTTGATTTGTTCGACAGATTTGGTCATGTCTTTCAATGTCATTAGTTGTATGAGTAATTCCACTATCTCTACTTTGGCTACTTCTTCAACGAACCTTGCTAGCCAAATGGTATCTTTGTATAATTGTAAAGTAGATAACACTTTATCTATTCCTGTCTCGTGGACTCCTTTGTATGAAGCAGTTTTTTCAAGTGACCTTAATAATGATCTTGTTTTAACATGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>116</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1" PGL_stop="692"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1" e_stop="692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="1" e_stop="692" e_length="692"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577707" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25" stop="692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397804" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCTCCCTCGTTTCCGTTTCAAGATCCCGGAGAATCACTCCACAAACTGATTCTGATGAAACAGAAAAAACTGAGTCCAAATATGGAACTGATGCTGAGGAAGGTGAAGATTGGTCCGACATTGATAACTTAGGGAGTGATGGATTAGATGAAGATTCTGATGAGGACTGGAGTGATGATGGTGATAATATACCTCCAGACTTCAGTGATAATGAAGGTACCGTTAACCTTGAAGAGGGCAAACTGACTACACAAGTTAATGGTGCAAAGAAGAAGGAAAACAAGGTTTTGGACCCAGTTTTTCCAGATGGCCGGCCTCGTGAGCGCTGGTGATAAAAATATAAGTTTGTGCTTGAGATTATTTCATGCACAAAAGACACGGATAAAAGATCTAAAGTTACAAAATCTGTTATTAGCCTATTACAGTCTCACAAGGTTTGTAGTCCCCAGGGTAAAAGGTGCTTCCATTCTTTTCACACCCTGGCTACACATTCTTTTCTCTTAATAGGCCTTGGCTTAGCATCTTTGCATCAGATTTATGGTTTGATGTTGTCGTAAGTGAAATATCTTTACATCACATAGCTCATATAAGCTTCTGCTGGGAGTGGCATGTGAATTCTTAGTTCTGTACTAATCCAGACACTAAAAAAGCTTCATATGTAAGATTGTTTGGCTGATTGTAAAGTGTAGCT</gDNA_template>
            <first_frame> R  S  L  V  S  V  S  R  S  R  R  I  T  P  Q  T  D  S  D  E  T  E  K  T  E  S  K  Y  G  T  D  A  E  E  G  E  D  W  S  D  I  D  N  L  G  S  D  G  L  D  E  D  S  D  E  D  W  S  D  D  G  D  N  I  P  P  D  F  S  D  N  E  G  T  V  N  L  E  E  G  K  L  T  T  Q  V  N  G  A  K  K  K  E  N  K  V  L  D  P  V  F  P  D  G  R  P  R  E  R  W  *  *  K  Y  K  F  V  L  E  I  I  S  C  T  K  D  T  D  K  R  S  K  V  T  K  S  V  I  S  L  L  Q  S  H  K  V  C  S  P  Q  G  K  R  C  F  H  S  F  H  T  L  A  T  H  S  F  L  L  I  G  L  G  L  A  S  L  H  Q  I  Y  G  L  M  L  S  *  V  K  Y  L  Y  I  T  *  L  I  *  A  S  A  G  S  G  M  *  I  L  S  S  V  L  I  Q  T  L  K  K  L  H  M  *  D  C  L  A  D  C  K  V  *   </first_frame>
            <second_frame>  A  P  S  F  P  F  Q  D  P  G  E  S  L  H  K  L  I  L  M  K  Q  K  K  L  S  P  N  M  E  L  M  L  R  K  V  K  I  G  P  T  L  I  T  *  G  V  M  D  *  M  K  I  L  M  R  T  G  V  M  M  V  I  I  Y  L  Q  T  S  V  I  M  K  V  P  L  T  L  K  R  A  N  *  L  H  K  L  M  V  Q  R  R  R  K  T  R  F  W  T  Q  F  F  Q  M  A  G  L  V  S  A  G  D  K  N  I  S  L  C  L  R  L  F  H  A  Q  K  T  R  I  K  D  L  K  L  Q  N  L  L  L  A  Y  Y  S  L  T  R  F  V  V  P  R  V  K  G  A  S  I  L  F  T  P  W  L  H  I  L  F  S  *  *  A  L  A  *  H  L  C  I  R  F  M  V  *  C  C  R  K  *  N  I  F  T  S  H  S  S  Y  K  L  L  L  G  V  A  C  E  F  L  V  L  Y  *  S  R  H  *  K  S  F  I  C  K  I  V  W  L  I  V  K  C  S  </second_frame>
            <third_frame>   L  P  R  F  R  F  K  I  P  E  N  H  S  T  N  *  F  *  *  N  R  K  N  *  V  Q  I  W  N  *  C  *  G  R  *  R  L  V  R  H  *  *  L  R  E  *  W  I  R  *  R  F  *  *  G  L  E  *  *  W  *  *  Y  T  S  R  L  Q  *  *  *  R  Y  R  *  P  *  R  G  Q  T  D  Y  T  S  *  W  C  K  E  E  G  K  Q  G  F  G  P  S  F  S  R  W  P  A  S  *  A  L  V  I  K  I  *  V  C  A  *  D  Y  F  M  H  K  R  H  G  *  K  I  *  S  Y  K  I  C  Y  *  P  I  T  V  S  Q  G  L  *  S  P  G  *  K  V  L  P  F  F  S  H  P  G  Y  T  F  F  S  L  N  R  P  W  L  S  I  F  A  S  D  L  W  F  D  V  V  V  S  E  I  S  L  H  H  I  A  H  I  S  F  C  W  E  W  H  V  N  S  *  F  C  T  N  P  D  T  K  K  A  S  Y  V  R  L  F  G  *  L  *  S  V  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1" stop="333"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSLVSVSRSRRITPQTDSDETEKTESKYGTDAEEGEDWSDIDNLGSDGLDEDSDEDWSDDGDNIPPDFSDNEGTVNLEEGKLTTQVNGAKKKENKVLDPVFPDGRPRERW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="248" stop="505"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHKLMVQRRRKTRFWTQFFQMAGLVSAGDKNISLCLRLFHAQKTRIKDLKLQNLLLAYYSLTRFVVPRVKGASILFTPWLHILFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="9015" PGL_stop="9663"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9015" e_stop="9663"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="9015" e_stop="9663" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9015" stop="9406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9099" stop="9663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAACCTGGTTGAACCATATTTTCTTAGTTTCTAACAGCAAGGTATAACAGCGAGACTCGAAAGCAAACATGAGATAATAATAAACGAAAATCACTCTTCTTTACTCTACTCCAGACAAGAGTTCTACAACTTTTATATATACAAAGCTCTGGAAACAAGCTGCAAATATTCCGCCCATAATTTTTCGCAAGCTAAAAGTTGCATCTACCAGCTCAAAACAAGTCGCTGACCAGCACTACCCTACAGAAGTATTTACAGAAAATGAAAAGACCCTCAACAACATCATGAGAACCGCAAGATAGTAAAGGAAAAACAAAACCTCCATAAATAAAACTTGCATGATAACAGGATACACCGTGCACCCCCTGTTAATGCATAAAGTCTAGACAGATTACAAGCAGAAGCAAATTCCAAAGAGGTTGAAACCTAGCTTCTTGCAAATCTATACACAGCCCCAAAGATTTCATATCTCGATCTGGTTACTCGAAGACCAGTTCACACTGACGGGTAGAACACCTCCCTGCATAGCCATCCTCTCAGATACATCAGCTAGTGATTTCAGATTGCAATTAATTAAGGCCTTCACAAAGTAGCAAGTCTCCTCTTTAGTGTTCCCTTCAGGCACATCCACTACAAATGACTCAATCA</gDNA_template>
            <first_frame> E  T  W  L  N  H  I  F  L  V  S  N  S  K  V  *  Q  R  D  S  K  A  N  M  R  *  *  *  T  K  I  T  L  L  Y  S  T  P  D  K  S  S  T  T  F  I  Y  T  K  L  W  K  Q  A  A  N  I  P  P  I  I  F  R  K  L  K  V  A  S  T  S  S  K  Q  V  A  D  Q  H  Y  P  T  E  V  F  T  E  N  E  K  T  L  N  N  I  M  R  T  A  R  *  *  R  K  N  K  T  S  I  N  K  T  C  M  I  T  G  Y  T  V  H  P  L  L  M  H  K  V  *  T  D  Y  K  Q  K  Q  I  P  K  R  L  K  P  S  F  L  Q  I  Y  T  Q  P  Q  R  F  H  I  S  I  W  L  L  E  D  Q  F  T  L  T  G  R  T  P  P  C  I  A  I  L  S  D  T  S  A  S  D  F  R  L  Q  L  I  K  A  F  T  K  *  Q  V  S  S  L  V  F  P  S  G  T  S  T  T  N  D  S  I  </first_frame>
            <second_frame>  K  P  G  *  T  I  F  S  *  F  L  T  A  R  Y  N  S  E  T  R  K  Q  T  *  D  N  N  K  R  K  S  L  F  F  T  L  L  Q  T  R  V  L  Q  L  L  Y  I  Q  S  S  G  N  K  L  Q  I  F  R  P  *  F  F  A  S  *  K  L  H  L  P  A  Q  N  K  S  L  T  S  T  T  L  Q  K  Y  L  Q  K  M  K  R  P  S  T  T  S  *  E  P  Q  D  S  K  G  K  T  K  P  P  *  I  K  L  A  *  *  Q  D  T  P  C  T  P  C  *  C  I  K  S  R  Q  I  T  S  R  S  K  F  Q  R  G  *  N  L  A  S  C  K  S  I  H  S  P  K  D  F  I  S  R  S  G  Y  S  K  T  S  S  H  *  R  V  E  H  L  P  A  *  P  S  S  Q  I  H  Q  L  V  I  S  D  C  N  *  L  R  P  S  Q  S  S  K  S  P  L  *  C  S  L  Q  A  H  P  L  Q  M  T  Q  S </second_frame>
            <third_frame>   N  L  V  E  P  Y  F  L  S  F  *  Q  Q  G  I  T  A  R  L  E  S  K  H  E  I  I  I  N  E  N  H  S  S  L  L  Y  S  R  Q  E  F  Y  N  F  Y  I  Y  K  A  L  E  T  S  C  K  Y  S  A  H  N  F  S  Q  A  K  S  C  I  Y  Q  L  K  T  S  R  *  P  A  L  P  Y  R  S  I  Y  R  K  *  K  D  P  Q  Q  H  H  E  N  R  K  I  V  K  E  K  Q  N  L  H  K  *  N  L  H  D  N  R  I  H  R  A  P  P  V  N  A  *  S  L  D  R  L  Q  A  E  A  N  S  K  E  V  E  T  *  L  L  A  N  L  Y  T  A  P  K  I  S  Y  L  D  L  V  T  R  R  P  V  H  T  D  G  *  N  T  S  L  H  S  H  P  L  R  Y  I  S  *  *  F  Q  I  A  I  N  *  G  L  H  K  V  A  S  L  L  F  S  V  P  F  R  H  I  H  Y  K  *  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9099" stop="9317"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKITLLYSTPDKSSTTFIYTKLWKQAANIPPIIFRKLKVASTSSKQVADQHYPTEVFTENEKTLNNIMRTAR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9402" stop="9608"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TDYKQKQIPKRLKPSFLQIYTQPQRFHISIWLLEDQFTLTGRTPPCIAILSDTSASDFRLQLIKAFTK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9050" stop="9244"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQGITARLESKHEIIINENHSSLLYSRQEFYNFYIYKALETSCKYSAHNFSQAKSCIYQLKTSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="11549" PGL_stop="9091"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11549" e_stop="11323"/>
            <exon e_start="10637" e_stop="10422"/>
            <exon e_start="9724" e_stop="9091"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.770" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11549" e_stop="11323" e_length="227"/>
          </exon>
          <intron i_serial="1" don_prob="0.770" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11322" i_stop="10638" i_length="685"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10637" e_stop="10422" e_length="216"/>
          </exon>
          <intron i_serial="2" don_prob="0.961" acc_prob="0.991">
            <gDNA_intron_boundary i_start="10421" i_stop="9725" i_length="697"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9724" e_stop="9091" e_length="634"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11549" stop="11323"/>
              <exon start="10637" stop="10422"/>
              <exon start="9724" stop="9377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11537" stop="11323"/>
              <exon start="10637" stop="10422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11533" stop="11323"/>
              <exon start="10637" stop="10422"/>
              <exon start="9724" stop="9466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11531" stop="11323"/>
              <exon start="10637" stop="10422"/>
              <exon start="9724" stop="9633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11520" stop="11323"/>
              <exon start="10637" stop="10515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11502" stop="11323"/>
              <exon start="10637" stop="10422"/>
              <exon start="9724" stop="9504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11502" stop="11323"/>
              <exon start="10637" stop="10422"/>
              <exon start="9724" stop="9675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11477" stop="11323"/>
              <exon start="10637" stop="10422"/>
              <exon start="9724" stop="9707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11466" stop="11323"/>
              <exon start="10637" stop="10422"/>
              <exon start="9724" stop="9559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11463" stop="11323"/>
              <exon start="10637" stop="10422"/>
              <exon start="9724" stop="9254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11454" stop="11323"/>
              <exon start="10637" stop="10422"/>
              <exon start="9724" stop="9635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10626" stop="10422"/>
              <exon start="9724" stop="9339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10603" stop="10422"/>
              <exon start="9724" stop="9101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426690" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10584" stop="10422"/>
              <exon start="9724" stop="9108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10536" stop="10422"/>
              <exon start="9724" stop="9091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9724" stop="9125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575608" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9675" stop="9262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9562" stop="9101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9521" stop="9120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240458" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACCAGCCAACCACCACCAATTCTCAATCTCTCAAATATATCTATTTTTATTTATAGAGAACTTTTCTAAGTTGGTTTAAAAAGTTAGAAACTTTGAAGGGTGTGAATTAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATT : GTTTGGTCACTAGTGAGGAGATTTGATCAGCCTCAGAAGTATAAGCCATTTATTAGCAGGTGTACTGTGAAGGGTGATCTTACAATTGGTAGTGTTAGAGAGGTGAATGTCAAGTCTGGTCTTCCAGCCACCACTAGCACTGAAAGATTGGAACTTCTTGATGATGAGGAGCACATCCTTGGCATCAGAATCGTTGGTGGCGATCACAGGCTAAAG : AACTATTCTTCGGTTATTACAGTCCATCCAGAGACACTTGATGGTAGACCGGGGACACTGGTGATTGAGTCATTTGTAGTGGATGTGCCTGAAGGGAACACTAAAGAGGAGACTTGCTACTTTGTGAAGGCCTTAATTAATTGCAATCTGAAATCACTAGCTGATGTATCTGAGAGGATGGCTATGCAGGGAGGTGTTCTACCCGTCAGTGTGAACTGGTCTTCGAGTAACCAGATCGAGATATGAAATCTTTGGGGCTGTGTATAGATTTGCAAGAAGCTAGGTTTCAACCTCTTTGGAATTTGCTTCTGCTTGTAATCTGTCTAGACTTTATGCATTAACAGGGGGTGCACGGTGTATCCTGTTATCATGCAAGTTTTATTTATGGAGGTTTTGTTTTTCCTTTACTATCTTGCGGTTCTCATGATGTTGTTGAGGGTCTTTTCATTTTCTGTAAATACTTCTGTAGGGTAGTGCTGGTCAGCGACTTGTTTTGAGCTGGTAGATGCAACTTTTAGCTTGCGAAAAATTATGGGCGGAATATTTGCAGCTTGTTTCCAGAGCTTTGTATATATAAAAGTTGTAGAACTCTTGTCTGGAGTAGAGTAAAGAAGAGTGATTTTCGTTTATTATT</gDNA_template>
            <first_frame> *  P  A  N  H  H  Q  F  S  I  S  Q  I  Y  L  F  L  F  I  E  N  F  S  K  L  V  *  K  V  R  N  F  E  G  C  E  L  E  F  Y  *  S  K  W  N  H  S  L  L  K  D  T  I  V  I  S  L  V  N  I  S  V  L  H  L  L  L  N  T  S  K  H  Q  L  I  L :   F  G  H  *  *  G  D  L  I  S  L  R  S  I  S  H  L  L  A  G  V  L  *  R  V  I  L  Q  L  V  V  L  E  R  *  M  S  S  L  V  F  Q  P  P  L  A  L  K  D  W  N  F  L  M  M  R  S  T  S  L  A  S  E  S  L  V  A  I  T  G  *  R :   T  I  L  R  L  L  Q  S  I  Q  R  H  L  M  V  D  R  G  H  W  *  L  S  H  L  *  W  M  C  L  K  G  T  L  K  R  R  L  A  T  L  *  R  P  *  L  I  A  I  *  N  H  *  L  M  Y  L  R  G  W  L  C  R  E  V  F  Y  P  S  V  *  T  G  L  R  V  T  R  S  R  Y  E  I  F  G  A  V  Y  R  F  A  R  S  *  V  S  T  S  L  E  F  A  S  A  C  N  L  S  R  L  Y  A  L  T  G  G  A  R  C  I  L  L  S  C  K  F  Y  L  W  R  F  C  F  S  F  T  I  L  R  F  S  *  C  C  *  G  S  F  H  F  L  *  I  L  L  *  G  S  A  G  Q  R  L  V  L  S  W  *  M  Q  L  L  A  C  E  K  L  W  A  E  Y  L  Q  L  V  S  R  A  L  Y  I  *  K  L  *  N  S  C  L  E  *  S  K  E  E  *  F  S  F  I  I </first_frame>
            <second_frame>  N  Q  P  T  T  T  N  S  Q  S  L  K  Y  I  Y  F  Y  L  *  R  T  F  L  S  W  F  K  K  L  E  T  L  K  G  V  N  *  N  F  I  E  V  N  G  I  T  V  Y  *  K  I  P  *  S  S  A  *  *  T  S  V  F  F  I  S  C  *  T  H  Q  S  T  S  *  Y   : C  L  V  T  S  E  E  I  *  S  A  S  E  V  *  A  I  Y  *  Q  V  Y  C  E  G  *  S  Y  N  W  *  C  *  R  G  E  C  Q  V  W  S  S  S  H  H  *  H  *  K  I  G  T  S  *  *  *  G  A  H  P  W  H  Q  N  R  W  W  R  S  Q  A  K   : E  L  F  F  G  Y  Y  S  P  S  R  D  T  *  W  *  T  G  D  T  G  D  *  V  I  C  S  G  C  A  *  R  E  H  *  R  G  D  L  L  L  C  E  G  L  N  *  L  Q  S  E  I  T  S  *  C  I  *  E  D  G  Y  A  G  R  C  S  T  R  Q  C  E  L  V  F  E  *  P  D  R  D  M  K  S  L  G  L  C  I  D  L  Q  E  A  R  F  Q  P  L  W  N  L  L  L  L  V  I  C  L  D  F  M  H  *  Q  G  V  H  G  V  S  C  Y  H  A  S  F  I  Y  G  G  F  V  F  P  L  L  S  C  G  S  H  D  V  V  E  G  L  F  I  F  C  K  Y  F  C  R  V  V  L  V  S  D  L  F  *  A  G  R  C  N  F  *  L  A  K  N  Y  G  R  N  I  C  S  L  F  P  E  L  C  I  Y  K  S  C  R  T  L  V  W  S  R  V  K  K  S  D  F  R  L  L   </second_frame>
            <third_frame>   T  S  Q  P  P  P  I  L  N  L  S  N  I  S  I  F  I  Y  R  E  L  F  *  V  G  L  K  S  *  K  L  *  R  V  *  I  R  I  L  L  K  *  M  E  S  Q  F  I  E  R  Y  H  S  H  Q  P  S  E  H  Q  C  S  S  S  L  V  K  H  I  K  A  P  V  D  I  :  V  W  S  L  V  R  R  F  D  Q  P  Q  K  Y  K  P  F  I  S  R  C  T  V  K  G  D  L  T  I  G  S  V  R  E  V  N  V  K  S  G  L  P  A  T  T  S  T  E  R  L  E  L  L  D  D  E  E  H  I  L  G  I  R  I  V  G  G  D  H  R  L  K  :  N  Y  S  S  V  I  T  V  H  P  E  T  L  D  G  R  P  G  T  L  V  I  E  S  F  V  V  D  V  P  E  G  N  T  K  E  E  T  C  Y  F  V  K  A  L  I  N  C  N  L  K  S  L  A  D  V  S  E  R  M  A  M  Q  G  G  V  L  P  V  S  V  N  W  S  S  S  N  Q  I  E  I  *  N  L  W  G  C  V  *  I  C  K  K  L  G  F  N  L  F  G  I  C  F  C  L  *  S  V  *  T  L  C  I  N  R  G  C  T  V  Y  P  V  I  M  Q  V  L  F  M  E  V  L  F  F  L  Y  Y  L  A  V  L  M  M  L  L  R  V  F  S  F  S  V  N  T  S  V  G  *  C  W  S  A  T  C  F  E  L  V  D  A  T  F  S  L  R  K  I  M  G  G  I  F  A  A  C  F  Q  S  F  V  Y  I  K  V  V  E  L  L  S  G  V  E  *  R  R  V  I  F  V  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11421" stop="11323"/>
                    <exon start="10637" stop="10422"/>
                    <exon start="9724" stop="9479"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MESQFIERYHSHQPSEHQCSSSLVKHIKAPVDIVWSLVRRFDQPQKYKPFISRCTVKGDLTIGSVREVNVKSGLPATTSTERLELLDDEEHILGIRIVGGDHRLKNYSSVITVHPETLDGRPGTLVIESFVVDVPEGNTKEETCYFVKALINCNLKSLADVSERMAMQGGVLPVSVNWSSSNQIEI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11440" e_stop="10886"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="11440" e_stop="10886" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11440" stop="10921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11439" stop="10886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11439" stop="11163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290593" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGAATTTTATTGAAGTAAATGGAATCACAGTTTATTGAAAGATACCATAGTCATCAGCCTAGTGAACATCAGTGTTCTTCATCTCTTGTTAAACACATCAAAGCACCAGTTGATATTGTAAAAATCATATCTTTTTTAGAATTATTCTCTTGATTTCTTGATTTGGGAGTAATTTTTATTTTGTGGGGTTGGGGGTTCTTGAGGATTTCTCTTATTTATTTCTAGTTATACGACATTGGGTTTGTATAACATGATTGTATCTTTTTGTTCTATCTTTTCCTTATTTGTTGGGATACTAATCTTTTGGTTCCTTGTGTGTTTATTTGTGGAAAGTAATGTTTGTTTGGTAAGTTTTCTTTGAAAGGTTTTTTTTTTTCGAATTCCTAGCTAACTATTGGTGACTATGAAATTTGATCAGATTTTCGAAGTCTAATTAATTTCATATTCAAATATCTTTCAAGTTCCCAAAATCTGGATAGGATTTTTGGGACTTCCAATAAGAGAAATCTATGGTCAAACAGTAGCTTATCGAAAATCTTTCTTGGTTGAGGCAA</gDNA_template>
            <first_frame> *  N  F  I  E  V  N  G  I  T  V  Y  *  K  I  P  *  S  S  A  *  *  T  S  V  F  F  I  S  C  *  T  H  Q  S  T  S  *  Y  C  K  N  H  I  F  F  R  I  I  L  L  I  S  *  F  G  S  N  F  Y  F  V  G  L  G  V  L  E  D  F  S  Y  L  F  L  V  I  R  H  W  V  C  I  T  *  L  Y  L  F  V  L  S  F  P  Y  L  L  G  Y  *  S  F  G  S  L  C  V  Y  L  W  K  V  M  F  V  W  *  V  F  F  E  R  F  F  F  F  E  F  L  A  N  Y  W  *  L  *  N  L  I  R  F  S  K  S  N  *  F  H  I  Q  I  S  F  K  F  P  K  S  G  *  D  F  W  D  F  Q  *  E  K  S  M  V  K  Q  *  L  I  E  N  L  S  W  L  R  Q </first_frame>
            <second_frame>  R  I  L  L  K  *  M  E  S  Q  F  I  E  R  Y  H  S  H  Q  P  S  E  H  Q  C  S  S  S  L  V  K  H  I  K  A  P  V  D  I  V  K  I  I  S  F  L  E  L  F  S  *  F  L  D  L  G  V  I  F  I  L  W  G  W  G  F  L  R  I  S  L  I  Y  F  *  L  Y  D  I  G  F  V  *  H  D  C  I  F  L  F  Y  L  F  L  I  C  W  D  T  N  L  L  V  P  C  V  F  I  C  G  K  *  C  L  F  G  K  F  S  L  K  G  F  F  F  S  N  S  *  L  T  I  G  D  Y  E  I  *  S  D  F  R  S  L  I  N  F  I  F  K  Y  L  S  S  S  Q  N  L  D  R  I  F  G  T  S  N  K  R  N  L  W  S  N  S  S  L  S  K  I  F  L  G  *  G   </second_frame>
            <third_frame>   E  F  Y  *  S  K  W  N  H  S  L  L  K  D  T  I  V  I  S  L  V  N  I  S  V  L  H  L  L  L  N  T  S  K  H  Q  L  I  L  *  K  S  Y  L  F  *  N  Y  S  L  D  F  L  I  W  E  *  F  L  F  C  G  V  G  G  S  *  G  F  L  L  F  I  S  S  Y  T  T  L  G  L  Y  N  M  I  V  S  F  C  S  I  F  S  L  F  V  G  I  L  I  F  W  F  L  V  C  L  F  V  E  S  N  V  C  L  V  S  F  L  *  K  V  F  F  F  R  I  P  S  *  L  L  V  T  M  K  F  D  Q  I  F  E  V  *  L  I  S  Y  S  N  I  F  Q  V  P  K  I  W  I  G  F  L  G  L  P  I  R  E  I  Y  G  Q  T  V  A  Y  R  K  S  F  L  V  E  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0108J06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="29355" PGL_stop="29617"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29355" e_stop="29617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="29355" e_stop="29617" e_length="263"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29355" stop="29617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29355" stop="29543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261313" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGAACTTTCTGGTCAACCACTGGAATTCTCCAAAGACAACACGTTACATTTTAAAACAATGGAGGAAATGTCTAAGTTGAGGAAGCAGCTAATTAATCTTGTTTTCAACTCCAAACTATGTGACTCACAGCAAAATTTCTCATGGCCTCACGGTACTTTGGAAGATGTAGAATGTGCTTGGAGGATTCCTTCAAACAAATGCCCTCTTCAACTGAATGAGGAGGAGATTCTGGGCCAAGCTATTTGTGCTGGCTGGGCTG</gDNA_template>
            <first_frame> F  *  T  F  W  S  T  T  G  I  L  Q  R  Q  H  V  T  F  *  N  N  G  G  N  V  *  V  E  E  A  A  N  *  S  C  F  Q  L  Q  T  M  *  L  T  A  K  F  L  M  A  S  R  Y  F  G  R  C  R  M  C  L  E  D  S  F  K  Q  M  P  S  S  T  E  *  G  G  D  S  G  P  S  Y  L  C  W  L  G   </first_frame>
            <second_frame>  F  E  L  S  G  Q  P  L  E  F  S  K  D  N  T  L  H  F  K  T  M  E  E  M  S  K  L  R  K  Q  L  I  N  L  V  F  N  S  K  L  C  D  S  Q  Q  N  F  S  W  P  H  G  T  L  E  D  V  E  C  A  W  R  I  P  S  N  K  C  P  L  Q  L  N  E  E  E  I  L  G  Q  A  I  C  A  G  W  A  </second_frame>
            <third_frame>   L  N  F  L  V  N  H  W  N  S  P  K  T  T  R  Y  I  L  K  Q  W  R  K  C  L  S  *  G  S  S  *  L  I  L  F  S  T  P  N  Y  V  T  H  S  K  I  S  H  G  L  T  V  L  W  K  M  *  N  V  L  G  G  F  L  Q  T  N  A  L  F  N  *  M  R  R  R  F  W  A  K  L  F  V  L  A  G  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29356" stop="29616"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FELSGQPLEFSKDNTLHFKTMEEMSKLRKQLINLVFNSKLCDSQQNFSWPHGTLEDVECAWRIPSNKCPLQLNEEEILGQAICAGWA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="30448" PGL_stop="32974"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30448" e_stop="30509"/>
            <exon e_start="32462" e_stop="32974"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30448" e_stop="30509" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30510" i_stop="32461" i_length="1952"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="32462" e_stop="32974" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30448" stop="30509"/>
              <exon start="32462" stop="32974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30448" stop="30509"/>
              <exon start="32462" stop="32973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30448" stop="30509"/>
              <exon start="32462" stop="32971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30448" stop="30509"/>
              <exon start="32462" stop="32953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAACACAGGCATAATATCTCGCTTCGTCAAAAACACAGGCATAATATCTCTGCCAGTGTGAG : GCGCGAGTTTACATTATCTGTTAAAAATTTTGGTGTTTGGAGTTGGAAGATGGTATCAAGTTCAGAATCAAGGAACTTGATTTTCGATTTGGATGCAATGACCTAATGAAGAAAGAAGATCCAACCAAAGACTAAAGCTACAAAGACACTCATCTTCTAACATGGAAGAGAGCGTGTACACTGCAGGTTTGGACGCAACTTATACAAGAATTGAATATTTTGCCTTTAGATTCAATAGTTATTACAGAACATACGCAAAGTATTATACTTGGATAAAGAGGCTTCATTCTGTATCTAGTTAGTGTCTTGGGACTGCACGGTTAGAAAATAGAAATGTAGTTTGTGTTAATGATGATCGTCCTCGTAATATTTGGTGAAGCATATTTAATCTTTAACGAACTAAAATGTGTATTTTTGGTCCTCTTATGTATAAGAAACATATATGGTACTCAAACTAGTTATAAAAAAAGAAATATATCTTGTCGATTTCGAGTACTTTTAAGAAATATTTGT</gDNA_template>
            <first_frame> *  H  R  H  N  I  S  L  R  Q  K  H  R  H  N  I  S  A  S  V  R :   R  E  F  T  L  S  V  K  N  F  G  V  W  S  W  K  M  V  S  S  S  E  S  R  N  L  I  F  D  L  D  A  M  T  *  *  R  K  K  I  Q  P  K  T  K  A  T  K  T  L  I  F  *  H  G  R  E  R  V  H  C  R  F  G  R  N  L  Y  K  N  *  I  F  C  L  *  I  Q  *  L  L  Q  N  I  R  K  V  L  Y  L  D  K  E  A  S  F  C  I  *  L  V  S  W  D  C  T  V  R  K  *  K  C  S  L  C  *  *  *  S  S  S  *  Y  L  V  K  H  I  *  S  L  T  N  *  N  V  Y  F  W  S  S  Y  V  *  E  T  Y  M  V  L  K  L  V  I  K  K  E  I  Y  L  V  D  F  E  Y  F  *  E  I  F   </first_frame>
            <second_frame>  N  T  G  I  I  S  R  F  V  K  N  T  G  I  I  S  L  P  V  *   : G  A  S  L  H  Y  L  L  K  I  L  V  F  G  V  G  R  W  Y  Q  V  Q  N  Q  G  T  *  F  S  I  W  M  Q  *  P  N  E  E  R  R  S  N  Q  R  L  K  L  Q  R  H  S  S  S  N  M  E  E  S  V  Y  T  A  G  L  D  A  T  Y  T  R  I  E  Y  F  A  F  R  F  N  S  Y  Y  R  T  Y  A  K  Y  Y  T  W  I  K  R  L  H  S  V  S  S  *  C  L  G  T  A  R  L  E  N  R  N  V  V  C  V  N  D  D  R  P  R  N  I  W  *  S  I  F  N  L  *  R  T  K  M  C  I  F  G  P  L  M  Y  K  K  H  I  W  Y  S  N  *  L  *  K  K  K  Y  I  L  S  I  S  S  T  F  K  K  Y  L  </second_frame>
            <third_frame>   T  Q  A  *  Y  L  A  S  S  K  T  Q  A  *  Y  L  C  Q  C  E  :  A  R  V  Y  I  I  C  *  K  F  W  C  L  E  L  E  D  G  I  K  F  R  I  K  E  L  D  F  R  F  G  C  N  D  L  M  K  K  E  D  P  T  K  D  *  S  Y  K  D  T  H  L  L  T  W  K  R  A  C  T  L  Q  V  W  T  Q  L  I  Q  E  L  N  I  L  P  L  D  S  I  V  I  T  E  H  T  Q  S  I  I  L  G  *  R  G  F  I  L  Y  L  V  S  V  L  G  L  H  G  *  K  I  E  M  *  F  V  L  M  M  I  V  L  V  I  F  G  E  A  Y  L  I  F  N  E  L  K  C  V  F  L  V  L  L  C  I  R  N  I  Y  G  T  Q  T  S  Y  K  K  R  N  I  S  C  R  F  R  V  L  L  R  N  I  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32563" stop="32763"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNEERRSNQRLKLQRHSSSNMEESVYTAGLDATYTRIEYFAFRFNSYYRTYAKYYTWIKRLHSVSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="41829" PGL_stop="42819"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41829" e_stop="41877"/>
            <exon e_start="42036" e_stop="42819"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.947" e_score="1.000"/>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41829" e_stop="41877" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.947">
            <gDNA_intron_boundary i_start="41878" i_stop="42035" i_length="158"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="42036" e_stop="42819" e_length="784"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41829" stop="41877"/>
              <exon start="42036" stop="42493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42173" stop="42819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558145" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAACGTTTAAATCGTACATTCAGATCCCATCCTTGTCTGAATAAGAAT : AAACTTCTATACTCTCCAATGGGAAAGATATTCATCATCCAGCCTGATGAGAGGTCATCTGCCCCTCACCCTCTGCTTCCTCCAGGCAGTGGCATTTATTCCCTAGACAGCACCAATTGTGCATTTACTAGGAGAGCTTTCAGAGTTTTTTTGAATTCTCCACACCCATTAGAGATTCTAAGTGTCCCTACAGCATATGGTTCTGGTGGTACAATTCTCAGAGACCATGACTCGAGCAATTATCTGAAGGCTGTGAACAACATTATAAGGCAACACACAAAACTACTTGTCCGGAGAGTAAGAAAACAGAGGAACCTGATTTGGCCGTTATTGGCTTCACAATCTCCACATGCATGGAGCCATGAGCGCGACATAGAAGATAGAGGAATATTAAGAAAGGAAATAATGTCAAGCGTTTGATTTCCTAGTGAGAATTCATACCCTACCTATTGAGGCCTTCTCTTGCCCCAGTCCTGCCAGCCAAATTATAAGTCTATTACAAGAGCTCAACCTCATTTGAGAATTGTTCTACCTAATTAGAACCTATAAGTTATCCTACAACCTATGATCTTTAGAGAACTATAAGAGGGAGAGATGGTTCAGCCTATTATAATTTATATGAAGACTTTCAATGTACTAATAGCAACAAAGTGCAGACATATCAGGAGAGCACATAAGCAAAGGAGCTTGGTTTGACTACTTTGGTGCATGATATCAGTAGCCATACTTTGGAAAAGAAGAATGGGTATAGTAATTACTGAAATCATAAGAGGAAGTACATGAA</gDNA_template>
            <first_frame> Q  T  F  K  S  Y  I  Q  I  P  S  L  S  E  *  E   : *  T  S  I  L  S  N  G  K  D  I  H  H  P  A  *  *  E  V  I  C  P  S  P  S  A  S  S  R  Q  W  H  L  F  P  R  Q  H  Q  L  C  I  Y  *  E  S  F  Q  S  F  F  E  F  S  T  P  I  R  D  S  K  C  P  Y  S  I  W  F  W  W  Y  N  S  Q  R  P  *  L  E  Q  L  S  E  G  C  E  Q  H  Y  K  A  T  H  K  T  T  C  P  E  S  K  K  T  E  E  P  D  L  A  V  I  G  F  T  I  S  T  C  M  E  P  *  A  R  H  R  R  *  R  N  I  K  K  G  N  N  V  K  R  L  I  S  *  *  E  F  I  P  Y  L  L  R  P  S  L  A  P  V  L  P  A  K  L  *  V  Y  Y  K  S  S  T  S  F  E  N  C  S  T  *  L  E  P  I  S  Y  P  T  T  Y  D  L  *  R  T  I  R  G  R  D  G  S  A  Y  Y  N  L  Y  E  D  F  Q  C  T  N  S  N  K  V  Q  T  Y  Q  E  S  T  *  A  K  E  L  G  L  T  T  L  V  H  D  I  S  S  H  T  L  E  K  K  N  G  Y  S  N  Y  *  N  H  K  R  K  Y  M   </first_frame>
            <second_frame>  K  R  L  N  R  T  F  R  S  H  P  C  L  N  K  N  :  K  L  L  Y  S  P  M  G  K  I  F  I  I  Q  P  D  E  R  S  S  A  P  H  P  L  L  P  P  G  S  G  I  Y  S  L  D  S  T  N  C  A  F  T  R  R  A  F  R  V  F  L  N  S  P  H  P  L  E  I  L  S  V  P  T  A  Y  G  S  G  G  T  I  L  R  D  H  D  S  S  N  Y  L  K  A  V  N  N  I  I  R  Q  H  T  K  L  L  V  R  R  V  R  K  Q  R  N  L  I  W  P  L  L  A  S  Q  S  P  H  A  W  S  H  E  R  D  I  E  D  R  G  I  L  R  K  E  I  M  S  S  V  *  F  P  S  E  N  S  Y  P  T  Y  *  G  L  L  L  P  Q  S  C  Q  P  N  Y  K  S  I  T  R  A  Q  P  H  L  R  I  V  L  P  N  *  N  L  *  V  I  L  Q  P  M  I  F  R  E  L  *  E  G  E  M  V  Q  P  I  I  I  Y  M  K  T  F  N  V  L  I  A  T  K  C  R  H  I  R  R  A  H  K  Q  R  S  L  V  *  L  L  W  C  M  I  S  V  A  I  L  W  K  R  R  M  G  I  V  I  T  E  I  I  R  G  S  T  *  </second_frame>
            <third_frame>   N  V  *  I  V  H  S  D  P  I  L  V  *  I  R  I :   N  F  Y  T  L  Q  W  E  R  Y  S  S  S  S  L  M  R  G  H  L  P  L  T  L  C  F  L  Q  A  V  A  F  I  P  *  T  A  P  I  V  H  L  L  G  E  L  S  E  F  F  *  I  L  H  T  H  *  R  F  *  V  S  L  Q  H  M  V  L  V  V  Q  F  S  E  T  M  T  R  A  I  I  *  R  L  *  T  T  L  *  G  N  T  Q  N  Y  L  S  G  E  *  E  N  R  G  T  *  F  G  R  Y  W  L  H  N  L  H  M  H  G  A  M  S  A  T  *  K  I  E  E  Y  *  E  R  K  *  C  Q  A  F  D  F  L  V  R  I  H  T  L  P  I  E  A  F  S  C  P  S  P  A  S  Q  I  I  S  L  L  Q  E  L  N  L  I  *  E  L  F  Y  L  I  R  T  Y  K  L  S  Y  N  L  *  S  L  E  N  Y  K  R  E  R  W  F  S  L  L  *  F  I  *  R  L  S  M  Y  *  *  Q  Q  S  A  D  I  S  G  E  H  I  S  K  G  A  W  F  D  Y  F  G  A  *  Y  Q  *  P  Y  F  G  K  E  E  W  V  *  *  L  L  K  S  *  E  E  V  H  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41830" stop="41877"/>
                    <exon start="42036" stop="42455"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRLNRTFRSHPCLNKNKLLYSPMGKIFIIQPDERSSAPHPLLPPGSGIYSLDSTNCAFTRRAFRVFLNSPHPLEILSVPTAYGSGGTILRDHDSSNYLKAVNNIIRQHTKLLVRRVRKQRNLIWPLLASQSPHAWSHERDIEDRGILRKEIMSSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="53423" PGL_stop="53724"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53423" e_stop="53478"/>
            <exon e_start="53574" e_stop="53724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53423" e_stop="53478" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53479" i_stop="53573" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="53574" e_stop="53724" e_length="151"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53423" stop="53478"/>
              <exon start="53574" stop="53724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53423" stop="53478"/>
              <exon start="53574" stop="53723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53423" stop="53478"/>
              <exon start="53574" stop="53723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53423" stop="53478"/>
              <exon start="53574" stop="53723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53423" stop="53478"/>
              <exon start="53574" stop="53723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737337" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTGTGTTAGTTTATGGGGTCCTGTGCCAATTAATTCACTTCCTGATGTCACTG : CGGAACCTCCTCGTAAAGATGGTGGGGAATTGCTTCTAAGTAAAACATTTCTTGATTCCTGTAGCTCCGTCTATGCTGTTTTTCCCGGCGGGCAGGAAAACCAAGGGCAACCTTTCGTCTCTAAACATTTTAATGTGATAGATCCTTTACG</gDNA_template>
            <first_frame> L  L  C  *  F  M  G  S  C  A  N  *  F  T  S  *  C  H  C :   G  T  S  S  *  R  W  W  G  I  A  S  K  *  N  I  S  *  F  L  *  L  R  L  C  C  F  S  R  R  A  G  K  P  R  A  T  F  R  L  *  T  F  *  C  D  R  S  F  T </first_frame>
            <second_frame>  F  C  V  S  L  W  G  P  V  P  I  N  S  L  P  D  V  T   : A  E  P  P  R  K  D  G  G  E  L  L  L  S  K  T  F  L  D  S  C  S  S  V  Y  A  V  F  P  G  G  Q  E  N  Q  G  Q  P  F  V  S  K  H  F  N  V  I  D  P  L   </second_frame>
            <third_frame>   F  V  L  V  Y  G  V  L  C  Q  L  I  H  F  L  M  S  L  :  R  N  L  L  V  K  M  V  G  N  C  F  *  V  K  H  F  L  I  P  V  A  P  S  M  L  F  F  P  A  G  R  K  T  K  G  N  L  S  S  L  N  I  L  M  *  *  I  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53424" stop="53478"/>
                    <exon start="53574" stop="53722"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCVSLWGPVPINSLPDVTAEPPRKDGGELLLSKTFLDSCSSVYAVFPGGQENQGQPFVSKHFNVIDPL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="58160" PGL_stop="61174"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58160" e_stop="58837"/>
            <exon e_start="59983" e_stop="60594"/>
            <exon e_start="60777" e_stop="61174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.950" e_score="0.962"/>
          <exon-intron don_prob="0.990" acc_prob="0.986" e_score="0.955"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="58160" e_stop="58837" e_length="678"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.950">
            <gDNA_intron_boundary i_start="58838" i_stop="59982" i_length="1145"/>
          </intron>
          <exon e_serial="2" e_score="0.955">
            <gDNA_exon_boundary e_start="59983" e_stop="60594" e_length="612"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.986">
            <gDNA_intron_boundary i_start="60595" i_stop="60776" i_length="182"/>
          </intron>
          <exon e_serial="3" e_score="0.905">
            <gDNA_exon_boundary e_start="60777" e_stop="61174" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58160" stop="58739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58162" stop="58709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58589" stop="58837"/>
              <exon start="59983" stop="60449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60221" stop="60594"/>
              <exon start="60777" stop="60934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60226" stop="60594"/>
              <exon start="60777" stop="61174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611508" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60325" stop="60594"/>
              <exon start="60777" stop="61076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596108" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATGAAATTGCTCAGACTAGTGACTCGGACACAATGATACCCATTACACCAATGCTTATTGGGCCTGGTTCTCGGCAAAGAACGACTGATAATTCTGGGGTTATTGCATTTTACCCCACTGGACCACCAGTTCCATTTCTAACTATGCTTCCAATATATAATATTTCACCTGAGGCAGGAACTCCTGATTCTTCAACAAGTCATTTAGGAGGAGAAGAATGCCTAGATCATAGTGATTCAGCCCATAACTTTGAGTTATCTGAGGGACTTGATCACTCTGAAGATTTAACTCCATCCAGTTCTTTCAGAGGGGCTACTTCTATGGAGCCACCTGGTGAACGGAAGCCTGATATACTTAACAGTGACTTTGCTAGTCATTGGCAAAACTTGCAATATGGAAGGTTTTGCCAAAACCCTAGACATACTGGACCACTAGTTTATCATTCTCCAGTAATGGTACCACCTGGATATTTACAGGGTCGTTTCCCATGGGATGGTCCTGGAAGACCTCATTCAGCCAACATGAACGTCTTTACTCAGCTGATGAGCTGTGGTCCTCGTGTATTGCCTATTTCACCCCTACAGTCTGCTTCTAATAGACCTCCTAATGTGTTTCCACGGTATGTTGATGAGATACCAAGATTCCGTAGCGGGACAGGGACATACCTGCCAAATCCT : AAGGTTTCAGTTAGGGATCGACACTCATCTAATACAAGAAGGGGAAATTACAACTATGAGAGAAACGATAACCATGTTGACAGAGAGGGGAATTGGAATATGAATCCAAAATCTCGTGCTGGTGGGCGCAATTATAACCGCAGCCAATCTGAGAAATCAAACTCAAGAGTGGATCGGTTGGCATCCAGTGACAGCCGGGCAGACAGATCATGGAGTTCACATAGACATGATTCTGTTCCTTATCTGTCCCAAAATGGCCAATTGCGTGGAAATTCAAGCCATAGTGGCCCTCCTAATGTGGCATATGGCATGTATCCATTAACAGCAATGAACCCAAGTGGACCGACTTCAAATGGGCCTGGTGGTTCGCCTGTTGTGATGCTGTATCCATTTGACCACAATGCTAGTTATGGTTCTCAAGGTTCACAAGGAGAACAACTTGAGTTTGGGTCTCTGAGTTCAGCAGGTTTCTCAGGTGCAAATGAACAACCTCAGCCAGGTGAGGGAAATCGACAACGGGGAGCCTTTGAGGAACATCGATTTCGTGCAGTTTCTGGGCAACGGTCTTCTCCAGATCAGCCATCTTCACCTCATCATCAAAGGTAAACGAAG : GAGGATTTAGTTAGTTTGGAAGATCAGTGGCTGGAAGGAATTGTTATTAAAGGGTACAAATTCGACATCCCTTTCACATTAAGCTGGAAAGAAGACAATGATTTGGTGATGGAAGAAACAGTGGTGAGGGGCAGGTGTGTTGCTACCATCAAATGATAGTTTTTTCAGTGAAGATCTGGACCATGAGAAGTTACTCATCAGATTTTACTAGAAAGGGGTCACATCTGGTCCTTCTGCTCTTATTTTTGTATGTTAGCTATGAAATCCTTTTTTAGCTGCAGCAACCCTCTTCAACGAGATATAGGTTTTATTCTGTTCTTGTAGATCATTGAAGTAGAAACCTTTTCAAGAATTTAGAGTGTAAAACTTGTTATAGTAGTTTTACCATAAAAAAAAGA</gDNA_template>
            <first_frame> H  E  I  A  Q  T  S  D  S  D  T  M  I  P  I  T  P  M  L  I  G  P  G  S  R  Q  R  T  T  D  N  S  G  V  I  A  F  Y  P  T  G  P  P  V  P  F  L  T  M  L  P  I  Y  N  I  S  P  E  A  G  T  P  D  S  S  T  S  H  L  G  G  E  E  C  L  D  H  S  D  S  A  H  N  F  E  L  S  E  G  L  D  H  S  E  D  L  T  P  S  S  S  F  R  G  A  T  S  M  E  P  P  G  E  R  K  P  D  I  L  N  S  D  F  A  S  H  W  Q  N  L  Q  Y  G  R  F  C  Q  N  P  R  H  T  G  P  L  V  Y  H  S  P  V  M  V  P  P  G  Y  L  Q  G  R  F  P  W  D  G  P  G  R  P  H  S  A  N  M  N  V  F  T  Q  L  M  S  C  G  P  R  V  L  P  I  S  P  L  Q  S  A  S  N  R  P  P  N  V  F  P  R  Y  V  D  E  I  P  R  F  R  S  G  T  G  T  Y  L  P  N  P  :  K  V  S  V  R  D  R  H  S  S  N  T  R  R  G  N  Y  N  Y  E  R  N  D  N  H  V  D  R  E  G  N  W  N  M  N  P  K  S  R  A  G  G  R  N  Y  N  R  S  Q  S  E  K  S  N  S  R  V  D  R  L  A  S  S  D  S  R  A  D  R  S  W  S  S  H  R  H  D  S  V  P  Y  L  S  Q  N  G  Q  L  R  G  N  S  S  H  S  G  P  P  N  V  A  Y  G  M  Y  P  L  T  A  M  N  P  S  G  P  T  S  N  G  P  G  G  S  P  V  V  M  L  Y  P  F  D  H  N  A  S  Y  G  S  Q  G  S  Q  G  E  Q  L  E  F  G  S  L  S  S  A  G  F  S  G  A  N  E  Q  P  Q  P  G  E  G  N  R  Q  R  G  A  F  E  E  H  R  F  R  A  V  S  G  Q  R  S  S  P  D  Q  P  S  S  P  H  H  Q  R  *  T  K  :  E  D  L  V  S  L  E  D  Q  W  L  E  G  I  V  I  K  G  Y  K  F  D  I  P  F  T  L  S  W  K  E  D  N  D  L  V  M  E  E  T  V  V  R  G  R  C  V  A  T  I  K  *  *  F  F  Q  *  R  S  G  P  *  E  V  T  H  Q  I  L  L  E  R  G  H  I  W  S  F  C  S  Y  F  C  M  L  A  M  K  S  F  F  S  C  S  N  P  L  Q  R  D  I  G  F  I  L  F  L  *  I  I  E  V  E  T  F  S  R  I  *  S  V  K  L  V  I  V  V  L  P  *  K  K   </first_frame>
            <second_frame>  M  K  L  L  R  L  V  T  R  T  Q  *  Y  P  L  H  Q  C  L  L  G  L  V  L  G  K  E  R  L  I  I  L  G  L  L  H  F  T  P  L  D  H  Q  F  H  F  *  L  C  F  Q  Y  I  I  F  H  L  R  Q  E  L  L  I  L  Q  Q  V  I  *  E  E  K  N  A  *  I  I  V  I  Q  P  I  T  L  S  Y  L  R  D  L  I  T  L  K  I  *  L  H  P  V  L  S  E  G  L  L  L  W  S  H  L  V  N  G  S  L  I  Y  L  T  V  T  L  L  V  I  G  K  T  C  N  M  E  G  F  A  K  T  L  D  I  L  D  H  *  F  I  I  L  Q  *  W  Y  H  L  D  I  Y  R  V  V  S  H  G  M  V  L  E  D  L  I  Q  P  T  *  T  S  L  L  S  *  *  A  V  V  L  V  Y  C  L  F  H  P  Y  S  L  L  L  I  D  L  L  M  C  F  H  G  M  L  M  R  Y  Q  D  S  V  A  G  Q  G  H  T  C  Q  I  L :   R  F  Q  L  G  I  D  T  H  L  I  Q  E  G  E  I  T  T  M  R  E  T  I  T  M  L  T  E  R  G  I  G  I  *  I  Q  N  L  V  L  V  G  A  I  I  T  A  A  N  L  R  N  Q  T  Q  E  W  I  G  W  H  P  V  T  A  G  Q  T  D  H  G  V  H  I  D  M  I  L  F  L  I  C  P  K  M  A  N  C  V  E  I  Q  A  I  V  A  L  L  M  W  H  M  A  C  I  H  *  Q  Q  *  T  Q  V  D  R  L  Q  M  G  L  V  V  R  L  L  *  C  C  I  H  L  T  T  M  L  V  M  V  L  K  V  H  K  E  N  N  L  S  L  G  L  *  V  Q  Q  V  S  Q  V  Q  M  N  N  L  S  Q  V  R  E  I  D  N  G  E  P  L  R  N  I  D  F  V  Q  F  L  G  N  G  L  L  Q  I  S  H  L  H  L  I  I  K  G  K  R  R :   R  I  *  L  V  W  K  I  S  G  W  K  E  L  L  L  K  G  T  N  S  T  S  L  S  H  *  A  G  K  K  T  M  I  W  *  W  K  K  Q  W  *  G  A  G  V  L  L  P  S  N  D  S  F  F  S  E  D  L  D  H  E  K  L  L  I  R  F  Y  *  K  G  V  T  S  G  P  S  A  L  I  F  V  C  *  L  *  N  P  F  L  A  A  A  T  L  F  N  E  I  *  V  L  F  C  S  C  R  S  L  K  *  K  P  F  Q  E  F  R  V  *  N  L  L  *  *  F  Y  H  K  K  K  </second_frame>
            <third_frame>   *  N  C  S  D  *  *  L  G  H  N  D  T  H  Y  T  N  A  Y  W  A  W  F  S  A  K  N  D  *  *  F  W  G  Y  C  I  L  P  H  W  T  T  S  S  I  S  N  Y  A  S  N  I  *  Y  F  T  *  G  R  N  S  *  F  F  N  K  S  F  R  R  R  R  M  P  R  S  *  *  F  S  P  *  L  *  V  I  *  G  T  *  S  L  *  R  F  N  S  I  Q  F  F  Q  R  G  Y  F  Y  G  A  T  W  *  T  E  A  *  Y  T  *  Q  *  L  C  *  S  L  A  K  L  A  I  W  K  V  L  P  K  P  *  T  Y  W  T  T  S  L  S  F  S  S  N  G  T  T  W  I  F  T  G  S  F  P  M  G  W  S  W  K  T  S  F  S  Q  H  E  R  L  Y  S  A  D  E  L  W  S  S  C  I  A  Y  F  T  P  T  V  C  F  *  *  T  S  *  C  V  S  T  V  C  *  *  D  T  K  I  P  *  R  D  R  D  I  P  A  K  S   : *  G  F  S  *  G  S  T  L  I  *  Y  K  K  G  K  L  Q  L  *  E  K  R  *  P  C  *  Q  R  G  E  L  E  Y  E  S  K  I  S  C  W  W  A  Q  L  *  P  Q  P  I  *  E  I  K  L  K  S  G  S  V  G  I  Q  *  Q  P  G  R  Q  I  M  E  F  T  *  T  *  F  C  S  L  S  V  P  K  W  P  I  A  W  K  F  K  P  *  W  P  S  *  C  G  I  W  H  V  S  I  N  S  N  E  P  K  W  T  D  F  K  W  A  W  W  F  A  C  C  D  A  V  S  I  *  P  Q  C  *  L  W  F  S  R  F  T  R  R  T  T  *  V  W  V  S  E  F  S  R  F  L  R  C  K  *  T  T  S  A  R  *  G  K  S  T  T  G  S  L  *  G  T  S  I  S  C  S  F  W  A  T  V  F  S  R  S  A  I  F  T  S  S  S  K  V  N  E   : G  G  F  S  *  F  G  R  S  V  A  G  R  N  C  Y  *  R  V  Q  I  R  H  P  F  H  I  K  L  E  R  R  Q  *  F  G  D  G  R  N  S  G  E  G  Q  V  C  C  Y  H  Q  M  I  V  F  S  V  K  I  W  T  M  R  S  Y  S  S  D  F  T  R  K  G  S  H  L  V  L  L  L  L  F  L  Y  V  S  Y  E  I  L  F  *  L  Q  Q  P  S  S  T  R  Y  R  F  Y  S  V  L  V  D  H  *  S  R  N  L  F  K  N  L  E  C  K  T  C  Y  S  S  F  T  I  K  K  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58160" stop="58837"/>
                    <exon start="59983" stop="60588"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1281</number_coding_nucleotides>
                  <number_encoded_amino_acids>427</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEIAQTSDSDTMIPITPMLIGPGSRQRTTDNSGVIAFYPTGPPVPFLTMLPIYNISPEAGTPDSSTSHLGGEECLDHSDSAHNFELSEGLDHSEDLTPSSSFRGATSMEPPGERKPDILNSDFASHWQNLQYGRFCQNPRHTGPLVYHSPVMVPPGYLQGRFPWDGPGRPHSANMNVFTQLMSCGPRVLPISPLQSASNRPPNVFPRYVDEIPRFRSGTGTYLPNPKVSVRDRHSSNTRRGNYNYERNDNHVDREGNWNMNPKSRAGGRNYNRSQSEKSNSRVDRLASSDSRADRSWSSHRHDSVPYLSQNGQLRGNSSHSGPPNVAYGMYPLTAMNPSGPTSNGPGGSPVVMLYPFDHNASYGSQGSQGEQLEFGSLSSAGFSGANEQPQPGEGNRQRGAFEEHRFRAVSGQRSSPDQPSSPHHQR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58160" e_stop="58837"/>
            <exon e_start="59986" e_stop="60192"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.564" e_score="0.962"/>
          <exon-only e_score="0.865"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="58160" e_stop="58837" e_length="678"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.564">
            <gDNA_intron_boundary i_start="58838" i_stop="59985" i_length="1148"/>
          </intron>
          <exon e_serial="2" e_score="0.865">
            <gDNA_exon_boundary e_start="59986" e_stop="60192" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58160" stop="58739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58162" stop="58709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58464" stop="58837"/>
              <exon start="59986" stop="60116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58574" stop="58837"/>
              <exon start="59986" stop="60192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATGAAATTGCTCAGACTAGTGACTCGGACACAATGATACCCATTACACCAATGCTTATTGGGCCTGGTTCTCGGCAAAGAACGACTGATAATTCTGGGGTTATTGCATTTTACCCCACTGGACCACCAGTTCCATTTCTAACTATGCTTCCAATATATAATATTTCACCTGAGGCAGGAACTCCTGATTCTTCAACAAGTCATTTAGGAGGAGAAGAATGCCTAGATCATAGTGATTCAGCCCATAACTTTGAGTTATCTGAGGGACTTGATCACTCTGAAGATTTAACTCCATCCAGTTCTTTCAGAGGGGCTACTTCTATGGAGCCACCTGGTGAACGGAAGCCTGATATACTTAACAGTGACTTTGCTAGTCATTGGCAAAACTTGCAATATGGAAGGTTTTGCCAAAACCCTAGACATACTGGACCACTAGTTTATCATTCTCCAGTAATGGTACCACCTGGATATTTACAGGGTCGTTTCCCATGGGATGGTCCTGGAAGACCTCATTCAGCCAACATGAACGTCTTTACTCAGCTGATGAGCTGTGGTCCTCGTGTATTGCCTATTTCACCCCTACAGTCTGCTTCTAATAGACCTCCTAATGTGTTTCCACGGTATGTTGATGAGATACCAAGATTCCGTAGCGGGACAGGGACATACCTGCCAAATCCT : GTTTCAGTTAGGGATCGACACTCATCTAATACAAGAAGGGGAAATTACAACTATGAGAGAAACGATAACCATGTTGACAGAGAGGGGAATTGGAATATGAATCCAAAATCTCGTGCTGGTGGGCGCAATTATAACCGCAGCCAATCTGAGAAATCAAACTCAAGAGTGGATCGGTTGGCATCCAGTGACAGCCGGGCAGACAGATCA</gDNA_template>
            <first_frame> H  E  I  A  Q  T  S  D  S  D  T  M  I  P  I  T  P  M  L  I  G  P  G  S  R  Q  R  T  T  D  N  S  G  V  I  A  F  Y  P  T  G  P  P  V  P  F  L  T  M  L  P  I  Y  N  I  S  P  E  A  G  T  P  D  S  S  T  S  H  L  G  G  E  E  C  L  D  H  S  D  S  A  H  N  F  E  L  S  E  G  L  D  H  S  E  D  L  T  P  S  S  S  F  R  G  A  T  S  M  E  P  P  G  E  R  K  P  D  I  L  N  S  D  F  A  S  H  W  Q  N  L  Q  Y  G  R  F  C  Q  N  P  R  H  T  G  P  L  V  Y  H  S  P  V  M  V  P  P  G  Y  L  Q  G  R  F  P  W  D  G  P  G  R  P  H  S  A  N  M  N  V  F  T  Q  L  M  S  C  G  P  R  V  L  P  I  S  P  L  Q  S  A  S  N  R  P  P  N  V  F  P  R  Y  V  D  E  I  P  R  F  R  S  G  T  G  T  Y  L  P  N  P  :  V  S  V  R  D  R  H  S  S  N  T  R  R  G  N  Y  N  Y  E  R  N  D  N  H  V  D  R  E  G  N  W  N  M  N  P  K  S  R  A  G  G  R  N  Y  N  R  S  Q  S  E  K  S  N  S  R  V  D  R  L  A  S  S  D  S  R  A  D  R  S </first_frame>
            <second_frame>  M  K  L  L  R  L  V  T  R  T  Q  *  Y  P  L  H  Q  C  L  L  G  L  V  L  G  K  E  R  L  I  I  L  G  L  L  H  F  T  P  L  D  H  Q  F  H  F  *  L  C  F  Q  Y  I  I  F  H  L  R  Q  E  L  L  I  L  Q  Q  V  I  *  E  E  K  N  A  *  I  I  V  I  Q  P  I  T  L  S  Y  L  R  D  L  I  T  L  K  I  *  L  H  P  V  L  S  E  G  L  L  L  W  S  H  L  V  N  G  S  L  I  Y  L  T  V  T  L  L  V  I  G  K  T  C  N  M  E  G  F  A  K  T  L  D  I  L  D  H  *  F  I  I  L  Q  *  W  Y  H  L  D  I  Y  R  V  V  S  H  G  M  V  L  E  D  L  I  Q  P  T  *  T  S  L  L  S  *  *  A  V  V  L  V  Y  C  L  F  H  P  Y  S  L  L  L  I  D  L  L  M  C  F  H  G  M  L  M  R  Y  Q  D  S  V  A  G  Q  G  H  T  C  Q  I  L :   F  Q  L  G  I  D  T  H  L  I  Q  E  G  E  I  T  T  M  R  E  T  I  T  M  L  T  E  R  G  I  G  I  *  I  Q  N  L  V  L  V  G  A  I  I  T  A  A  N  L  R  N  Q  T  Q  E  W  I  G  W  H  P  V  T  A  G  Q  T  D   </second_frame>
            <third_frame>   *  N  C  S  D  *  *  L  G  H  N  D  T  H  Y  T  N  A  Y  W  A  W  F  S  A  K  N  D  *  *  F  W  G  Y  C  I  L  P  H  W  T  T  S  S  I  S  N  Y  A  S  N  I  *  Y  F  T  *  G  R  N  S  *  F  F  N  K  S  F  R  R  R  R  M  P  R  S  *  *  F  S  P  *  L  *  V  I  *  G  T  *  S  L  *  R  F  N  S  I  Q  F  F  Q  R  G  Y  F  Y  G  A  T  W  *  T  E  A  *  Y  T  *  Q  *  L  C  *  S  L  A  K  L  A  I  W  K  V  L  P  K  P  *  T  Y  W  T  T  S  L  S  F  S  S  N  G  T  T  W  I  F  T  G  S  F  P  M  G  W  S  W  K  T  S  F  S  Q  H  E  R  L  Y  S  A  D  E  L  W  S  S  C  I  A  Y  F  T  P  T  V  C  F  *  *  T  S  *  C  V  S  T  V  C  *  *  D  T  K  I  P  *  R  D  R  D  I  P  A  K  S   : C  F  S  *  G  S  T  L  I  *  Y  K  K  G  K  L  Q  L  *  E  K  R  *  P  C  *  Q  R  G  E  L  E  Y  E  S  K  I  S  C  W  W  A  Q  L  *  P  Q  P  I  *  E  I  K  L  K  S  G  S  V  G  I  Q  *  Q  P  G  R  Q  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58160" stop="58837"/>
                    <exon start="59986" stop="60192"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>885</number_coding_nucleotides>
                  <number_encoded_amino_acids>295</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEIAQTSDSDTMIPITPMLIGPGSRQRTTDNSGVIAFYPTGPPVPFLTMLPIYNISPEAGTPDSSTSHLGGEECLDHSDSAHNFELSEGLDHSEDLTPSSSFRGATSMEPPGERKPDILNSDFASHWQNLQYGRFCQNPRHTGPLVYHSPVMVPPGYLQGRFPWDGPGRPHSANMNVFTQLMSCGPRVLPISPLQSASNRPPNVFPRYVDEIPRFRSGTGTYLPNPVSVRDRHSSNTRRGNYNYERNDNHVDREGNWNMNPKSRAGGRNYNRSQSEKSNSRVDRLASSDSRADRS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="68944" PGL_stop="62401"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68944" e_stop="68287"/>
            <exon e_start="67653" e_stop="67547"/>
            <exon e_start="67311" e_stop="67227"/>
            <exon e_start="65979" e_stop="65755"/>
            <exon e_start="64811" e_stop="64605"/>
            <exon e_start="64532" e_stop="64446"/>
            <exon e_start="64359" e_stop="64264"/>
            <exon e_start="63791" e_stop="63576"/>
            <exon e_start="63254" e_stop="63072"/>
            <exon e_start="62901" e_stop="62401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="0.953"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.634" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.536" e_score="1.000"/>
          <exon-intron don_prob="0.729" acc_prob="0.996" e_score="0.977"/>
          <exon-intron don_prob="0.979" acc_prob="0.808" e_score="0.969"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="0.977"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="0.984"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="68944" e_stop="68287" e_length="658"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68286" i_stop="67654" i_length="633"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67653" e_stop="67547" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="67546" i_stop="67312" i_length="235"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67311" e_stop="67227" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.634">
            <gDNA_intron_boundary i_start="67226" i_stop="65980" i_length="1247"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65979" e_stop="65755" e_length="225"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65754" i_stop="64812" i_length="943"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64811" e_stop="64605" e_length="207"/>
          </exon>
          <intron i_serial="5" don_prob="0.965" acc_prob="0.536">
            <gDNA_intron_boundary i_start="64604" i_stop="64533" i_length="72"/>
          </intron>
          <exon e_serial="6" e_score="0.977">
            <gDNA_exon_boundary e_start="64532" e_stop="64446" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.729" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64445" i_stop="64360" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="0.969">
            <gDNA_exon_boundary e_start="64359" e_stop="64264" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.979" acc_prob="0.808">
            <gDNA_intron_boundary i_start="64263" i_stop="63792" i_length="472"/>
          </intron>
          <exon e_serial="8" e_score="0.977">
            <gDNA_exon_boundary e_start="63791" e_stop="63576" e_length="216"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="63575" i_stop="63255" i_length="321"/>
          </intron>
          <exon e_serial="9" e_score="0.984">
            <gDNA_exon_boundary e_start="63254" e_stop="63072" e_length="183"/>
          </exon>
          <intron i_serial="9" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="63071" i_stop="62902" i_length="170"/>
          </intron>
          <exon e_serial="10" e_score="0.946">
            <gDNA_exon_boundary e_start="62901" e_stop="62401" e_length="501"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68944" stop="68495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68944" stop="68540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68601" stop="68287"/>
              <exon start="67653" stop="67547"/>
              <exon start="67311" stop="67227"/>
              <exon start="65979" stop="65897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68416" stop="68287"/>
              <exon start="67653" stop="67547"/>
              <exon start="67311" stop="67227"/>
              <exon start="65979" stop="65755"/>
              <exon start="64811" stop="64605"/>
              <exon start="64532" stop="64446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68415" stop="68287"/>
              <exon start="67653" stop="67547"/>
              <exon start="67311" stop="67227"/>
              <exon start="65979" stop="65755"/>
              <exon start="64811" stop="64702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65838" stop="65755"/>
              <exon start="64811" stop="64605"/>
              <exon start="64532" stop="64446"/>
              <exon start="64359" stop="64264"/>
              <exon start="63791" stop="63586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65790" stop="65755"/>
              <exon start="64811" stop="64605"/>
              <exon start="64532" stop="64446"/>
              <exon start="64359" stop="64264"/>
              <exon start="63791" stop="63576"/>
              <exon start="63254" stop="63188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64809" stop="64605"/>
              <exon start="64532" stop="64446"/>
              <exon start="64359" stop="64264"/>
              <exon start="63791" stop="63576"/>
              <exon start="63254" stop="63215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64756" stop="64605"/>
              <exon start="64532" stop="64446"/>
              <exon start="64359" stop="64264"/>
              <exon start="63791" stop="63687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63193" stop="63072"/>
              <exon start="62901" stop="62465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63193" stop="63072"/>
              <exon start="62901" stop="62478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63089" stop="63072"/>
              <exon start="62901" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417283" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGGAATGCAGTCGAATTCAAGAAACGAAGGGAGGTTTGGAAATGACAGGGGGAGTAGATATGAGGGTGGAAGAGGTGATGGTGGTCGAGATCGAAAGGAGTCCTCCTCAAGGGGAGGAAGATTTGGAAGTGATGTAAGGAGTGGAAGTGAGGGTAGAAGAAGTGGAGGCCGAGATCGTATGGAGTCATTTTCGAAGGGAGGAAGGTTTGGAAGTGATAATGGGAGAGAAAGTGAAGGTAGAAGAAGTGGAGGCCAGGATCGGACAGAGTCGCTTCCAAGGAAGGGAGGGAGGTTTGGAAGTGAAATGGCAAGTTCGAGTGACAATAGGGGTAAAAGCAGGATTGGTAGTGGATATGGTAGAGATATGGCAGCACAAGGTGGTAATGGTAGGTTAGGGAGGAAAGAAGGGGCAGGTATGGGTCGAGGTAGTTCCATGCTGTTGGATGAAGATGATACCGATAATGAGGATGACGAAGAGGAAGAGGAGAATGGTTATAAGGGGTTCCGAGATTTGATTGACAGCGAGGAAGAAAGTGAAGAATCTGATGAAGACAATGAGGTCGAGGATGAAAAGATGGCCTCATTGGAGGAGGACAGTCCAAGGGCATCAAGCCCGAGCTCACATGGAAAAAGTGATTCCCACCTCACCGAAACCAG : GTTTGATCAGTTTCCTCTCTCTCCCTTGTCTCTGAAAGGAGTTAAAGATGCTGGATACAAAACGATGACTGTAGTGCAGGAGGCAACCCTTCCCATTATTCTAAAAG : TGCCTGTTGTAATCCATTGTATTTGGTAGGCAAGGACGTTCTGGCCAAGGCAAAGACTGGCACTGGGAAAACTGTAGCATTTTTG : CTTCCTTCAATTGAAGTTGTTGTAAAATCACCCCCCAACACCCGTGATCAAAAGAGGCCACCAATTCTGGTGCTTGTGATATGCCCTACCCGGGAGCTTGCAACTCAAGCAGCTGCCGAGGCCAACACCTTGTTAAAATATCACCCTTCAATTGGGGTTCAAGTTGTTATAGGCGGAACAAGGCTTGCACTTGAGCAGAAAAGGATGCAAGCAAATCCATGTCAG : ATACTTGTGGCGACACCTGGGAGACTCAGAGATCATGTAGAGAATACAGCAGGATTTGCTACTCGGTTGATGGGTGTTAAAGTGTTGGTCCTTGATGAAGCCGATCATTTGTTGGATATGGGATTCCGTAAAGAAATTGAGAGAATCATCTCTGCTATTCCAAAACAGCGCCAAACACTTCTCTTTTCTGCAACAGTTCCACCGGAG : GTCCGTCAAATTTGTCATATTGCTTTGAAAAGAGACCACGAATTTATCAATACTGTTGAGGAAGGCAGTGAAGAGACACATGCACAA : GTTCAGCAGATGCATCTGGTTTCTCCTCTAGAATCACACTTTTCCCTTCTTTATGCTCTACTAAAAGAGCACATTGCTGATGATGTTAACTATAAG : GTTCTTGTATTTTGCACAACTGCAATGGTAACAAAACTCGTTGCTGAACTTCTTGGTGAACTTAACTTAAACGTCCGGGAGATTCATTCTCGTAAGCCACAAAGCTATAGAACAAGGGTTTCAGATGAATTTCGCCAGTCAACAGGTCTTATTCTAGTTTCCTCAGATGTTTCTGCTCGTGGAGTGGATTATCCAGATGTTACCTTAGTTGTACAG : ATTGGAGTGCCAGCTGATAGACAGCAGTACATCCATCGTCTAGGTAGAACCGGACGGAAAGGAAAAGAAGGACAAGGCATTTTGTTGTTGGCTCCATGGGAGGAATTCTTCTTGTCTACAATTAAAGATTTGCCCGTATCAAAGGCACCTGTACCTCTGCTTGATCCAGAGGCCAAGAAAAAG : GTGGAACGTGCGTTAGCCCATATAGAAATGAAAACCAAAGAATCTGCATACCAGGCATGGCTTGGTTACTATAATTCCAACAGGTCTATCGGTAAGGACAAGTACAGACTTGTTGAACTTGCAAACGAGTTTAGTCGGACCATGGGGCTTGACAACCCTCCAGCAATTCCAAAGCTTGTTCTTGGGAAAATGGGATTGAAAAATATTCCTGGACTACGTTCCAAGTAATTGAGATAGTGTTGCTGCTTCTTCTCATACACATATATGCATACGAAGTGTATATATACACAGCATAGGCCGTGCAATGCAACAATTAATTTCGAGCTAAGTGCTGTTTTTACCCATTGTTTGTAATTTTTTTGCTAGGGAGGATTCAAAGCCTTGACAGAACATAAGTTGAGTTCCTTTTTTACTAATAGGAAATTTGGCCTTTCCTCTTTCTAGTTGAACTATTTTGTCTCTTCATTTATTAGTAAGTGGGAATTACAAACAGCCACAGTT</gDNA_template>
            <first_frame> V  E  C  S  R  I  Q  E  T  K  G  G  L  E  M  T  G  G  V  D  M  R  V  E  E  V  M  V  V  E  I  E  R  S  P  P  Q  G  E  E  D  L  E  V  M  *  G  V  E  V  R  V  E  E  V  E  A  E  I  V  W  S  H  F  R  R  E  E  G  L  E  V  I  M  G  E  K  V  K  V  E  E  V  E  A  R  I  G  Q  S  R  F  Q  G  R  E  G  G  L  E  V  K  W  Q  V  R  V  T  I  G  V  K  A  G  L  V  V  D  M  V  E  I  W  Q  H  K  V  V  M  V  G  *  G  G  K  K  G  Q  V  W  V  E  V  V  P  C  C  W  M  K  M  I  P  I  M  R  M  T  K  R  K  R  R  M  V  I  R  G  S  E  I  *  L  T  A  R  K  K  V  K  N  L  M  K  T  M  R  S  R  M  K  R  W  P  H  W  R  R  T  V  Q  G  H  Q  A  R  A  H  M  E  K  V  I  P  T  S  P  K  P   : G  L  I  S  F  L  S  L  P  C  L  *  K  E  L  K  M  L  D  T  K  R  *  L  *  C  R  R  Q  P  F  P  L  F  *  K  :  C  L  L  *  S  I  V  F  G  R  Q  G  R  S  G  Q  G  K  D  W  H  W  E  N  C  S  I  F   : A  S  F  N  *  S  C  C  K  I  T  P  Q  H  P  *  S  K  E  A  T  N  S  G  A  C  D  M  P  Y  P  G  A  C  N  S  S  S  C  R  G  Q  H  L  V  K  I  S  P  F  N  W  G  S  S  C  Y  R  R  N  K  A  C  T  *  A  E  K  D  A  S  K  S  M  S   : D  T  C  G  D  T  W  E  T  Q  R  S  C  R  E  Y  S  R  I  C  Y  S  V  D  G  C  *  S  V  G  P  *  *  S  R  S  F  V  G  Y  G  I  P  *  R  N  *  E  N  H  L  C  Y  S  K  T  A  P  N  T  S  L  F  C  N  S  S  T  G   : G  P  S  N  L  S  Y  C  F  E  K  R  P  R  I  Y  Q  Y  C  *  G  R  Q  *  R  D  T  C  T   : S  S  A  D  A  S  G  F  S  S  R  I  T  L  F  P  S  L  C  S  T  K  R  A  H  C  *  *  C  *  L  *   : G  S  C  I  L  H  N  C  N  G  N  K  T  R  C  *  T  S  W  *  T  *  L  K  R  P  G  D  S  F  S  *  A  T  K  L  *  N  K  G  F  R  *  I  S  P  V  N  R  S  Y  S  S  F  L  R  C  F  C  S  W  S  G  L  S  R  C  Y  L  S  C  T   : D  W  S  A  S  *  *  T  A  V  H  P  S  S  R  *  N  R  T  E  R  K  R  R  T  R  H  F  V  V  G  S  M  G  G  I  L  L  V  Y  N  *  R  F  A  R  I  K  G  T  C  T  S  A  *  S  R  G  Q  E  K   : G  G  T  C  V  S  P  Y  R  N  E  N  Q  R  I  C  I  P  G  M  A  W  L  L  *  F  Q  Q  V  Y  R  *  G  Q  V  Q  T  C  *  T  C  K  R  V  *  S  D  H  G  A  *  Q  P  S  S  N  S  K  A  C  S  W  E  N  G  I  E  K  Y  S  W  T  T  F  Q  V  I  E  I  V  L  L  L  L  L  I  H  I  Y  A  Y  E  V  Y  I  Y  T  A  *  A  V  Q  C  N  N  *  F  R  A  K  C  C  F  Y  P  L  F  V  I  F  L  L  G  R  I  Q  S  L  D  R  T  *  V  E  F  L  F  Y  *  *  E  I  W  P  F  L  F  L  V  E  L  F  C  L  F  I  Y  *  *  V  G  I  T  N  S  H  S  </first_frame>
            <second_frame>  W  N  A  V  E  F  K  K  R  R  E  V  W  K  *  Q  G  E  *  I  *  G  W  K  R  *  W  W  S  R  S  K  G  V  L  L  K  G  R  K  I  W  K  *  C  K  E  W  K  *  G  *  K  K  W  R  P  R  S  Y  G  V  I  F  E  G  R  K  V  W  K  *  *  W  E  R  K  *  R  *  K  K  W  R  P  G  S  D  R  V  A  S  K  E  G  R  E  V  W  K  *  N  G  K  F  E  *  Q  *  G  *  K  Q  D  W  *  W  I  W  *  R  Y  G  S  T  R  W  *  W  *  V  R  E  E  R  R  G  R  Y  G  S  R  *  F  H  A  V  G  *  R  *  Y  R  *  *  G  *  R  R  G  R  G  E  W  L  *  G  V  P  R  F  D  *  Q  R  G  R  K  *  R  I  *  *  R  Q  *  G  R  G  *  K  D  G  L  I  G  G  G  Q  S  K  G  I  K  P  E  L  T  W  K  K  *  F  P  P  H  R  N  Q  :  V  *  S  V  S  S  L  S  L  V  S  E  R  S  *  R  C  W  I  Q  N  D  D  C  S  A  G  G  N  P  S  H  Y  S  K  S :   A  C  C  N  P  L  Y  L  V  G  K  D  V  L  A  K  A  K  T  G  T  G  K  T  V  A  F  L  :  L  P  S  I  E  V  V  V  K  S  P  P  N  T  R  D  Q  K  R  P  P  I  L  V  L  V  I  C  P  T  R  E  L  A  T  Q  A  A  A  E  A  N  T  L  L  K  Y  H  P  S  I  G  V  Q  V  V  I  G  G  T  R  L  A  L  E  Q  K  R  M  Q  A  N  P  C  Q  :  I  L  V  A  T  P  G  R  L  R  D  H  V  E  N  T  A  G  F  A  T  R  L  M  G  V  K  V  L  V  L  D  E  A  D  H  L  L  D  M  G  F  R  K  E  I  E  R  I  I  S  A  I  P  K  Q  R  Q  T  L  L  F  S  A  T  V  P  P  E  :  V  R  Q  I  C  H  I  A  L  K  R  D  H  E  F  I  N  T  V  E  E  G  S  E  E  T  H  A  Q  :  V  Q  Q  M  H  L  V  S  P  L  E  S  H  F  S  L  L  Y  A  L  L  K  E  H  I  A  D  D  V  N  Y  K  :  V  L  V  F  C  T  T  A  M  V  T  K  L  V  A  E  L  L  G  E  L  N  L  N  V  R  E  I  H  S  R  K  P  Q  S  Y  R  T  R  V  S  D  E  F  R  Q  S  T  G  L  I  L  V  S  S  D  V  S  A  R  G  V  D  Y  P  D  V  T  L  V  V  Q  :  I  G  V  P  A  D  R  Q  Q  Y  I  H  R  L  G  R  T  G  R  K  G  K  E  G  Q  G  I  L  L  L  A  P  W  E  E  F  F  L  S  T  I  K  D  L  P  V  S  K  A  P  V  P  L  L  D  P  E  A  K  K  K  :  V  E  R  A  L  A  H  I  E  M  K  T  K  E  S  A  Y  Q  A  W  L  G  Y  Y  N  S  N  R  S  I  G  K  D  K  Y  R  L  V  E  L  A  N  E  F  S  R  T  M  G  L  D  N  P  P  A  I  P  K  L  V  L  G  K  M  G  L  K  N  I  P  G  L  R  S  K  *  L  R  *  C  C  C  F  F  S  Y  T  Y  M  H  T  K  C  I  Y  T  Q  H  R  P  C  N  A  T  I  N  F  E  L  S  A  V  F  T  H  C  L  *  F  F  C  *  G  G  F  K  A  L  T  E  H  K  L  S  S  F  F  T  N  R  K  F  G  L  S  S  F  *  L  N  Y  F  V  S  S  F  I  S  K  W  E  L  Q  T  A  T  V </second_frame>
            <third_frame>   G  M  Q  S  N  S  R  N  E  G  R  F  G  N  D  R  G  S  R  Y  E  G  G  R  G  D  G  G  R  D  R  K  E  S  S  S  R  G  G  R  F  G  S  D  V  R  S  G  S  E  G  R  R  S  G  G  R  D  R  M  E  S  F  S  K  G  G  R  F  G  S  D  N  G  R  E  S  E  G  R  R  S  G  G  Q  D  R  T  E  S  L  P  R  K  G  G  R  F  G  S  E  M  A  S  S  S  D  N  R  G  K  S  R  I  G  S  G  Y  G  R  D  M  A  A  Q  G  G  N  G  R  L  G  R  K  E  G  A  G  M  G  R  G  S  S  M  L  L  D  E  D  D  T  D  N  E  D  D  E  E  E  E  E  N  G  Y  K  G  F  R  D  L  I  D  S  E  E  E  S  E  E  S  D  E  D  N  E  V  E  D  E  K  M  A  S  L  E  E  D  S  P  R  A  S  S  P  S  S  H  G  K  S  D  S  H  L  T  E  T  R :   F  D  Q  F  P  L  S  P  L  S  L  K  G  V  K  D  A  G  Y  K  T  M  T  V  V  Q  E  A  T  L  P  I  I  L  K   : V  P  V  V  I  H  C  I  W  *  A  R  T  F  W  P  R  Q  R  L  A  L  G  K  L  *  H  F  C :   F  L  Q  L  K  L  L  *  N  H  P  P  T  P  V  I  K  R  G  H  Q  F  W  C  L  *  Y  A  L  P  G  S  L  Q  L  K  Q  L  P  R  P  T  P  C  *  N  I  T  L  Q  L  G  F  K  L  L  *  A  E  Q  G  L  H  L  S  R  K  G  C  K  Q  I  H  V  R :   Y  L  W  R  H  L  G  D  S  E  I  M  *  R  I  Q  Q  D  L  L  L  G  *  W  V  L  K  C  W  S  L  M  K  P  I  I  C  W  I  W  D  S  V  K  K  L  R  E  S  S  L  L  F  Q  N  S  A  K  H  F  S  F  L  Q  Q  F  H  R  R :   S  V  K  F  V  I  L  L  *  K  E  T  T  N  L  S  I  L  L  R  K  A  V  K  R  H  M  H  K :   F  S  R  C  I  W  F  L  L  *  N  H  T  F  P  F  F  M  L  Y  *  K  S  T  L  L  M  M  L  T  I  R :   F  L  Y  F  A  Q  L  Q  W  *  Q  N  S  L  L  N  F  L  V  N  L  T  *  T  S  G  R  F  I  L  V  S  H  K  A  I  E  Q  G  F  Q  M  N  F  A  S  Q  Q  V  L  F  *  F  P  Q  M  F  L  L  V  E  W  I  I  Q  M  L  P  *  L  Y  R :   L  E  C  Q  L  I  D  S  S  T  S  I  V  *  V  E  P  D  G  K  E  K  K  D  K  A  F  C  C  W  L  H  G  R  N  S  S  C  L  Q  L  K  I  C  P  Y  Q  R  H  L  Y  L  C  L  I  Q  R  P  R  K  R :   W  N  V  R  *  P  I  *  K  *  K  P  K  N  L  H  T  R  H  G  L  V  T  I  I  P  T  G  L  S  V  R  T  S  T  D  L  L  N  L  Q  T  S  L  V  G  P  W  G  L  T  T  L  Q  Q  F  Q  S  L  F  L  G  K  W  D  *  K  I  F  L  D  Y  V  P  S  N  *  D  S  V  A  A  S  S  H  T  H  I  C  I  R  S  V  Y  I  H  S  I  G  R  A  M  Q  Q  L  I  S  S  *  V  L  F  L  P  I  V  C  N  F  F  A  R  E  D  S  K  P  *  Q  N  I  S  *  V  P  F  L  L  I  G  N  L  A  F  P  L  S  S  *  T  I  L  S  L  H  L  L  V  S  G  N  Y  K  Q  P  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67608" stop="67547"/>
                    <exon start="67311" stop="67227"/>
                    <exon start="65979" stop="65755"/>
                    <exon start="64811" stop="64605"/>
                    <exon start="64532" stop="64446"/>
                    <exon start="64359" stop="64264"/>
                    <exon start="63791" stop="63576"/>
                    <exon start="63254" stop="63072"/>
                    <exon start="62901" stop="62674"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1386</number_coding_nucleotides>
                  <number_encoded_amino_acids>462</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RCWIQNDDCSAGGNPSHYSKSACCNPLYLVGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPNTRDQKRPPILVLVICPTRELATQAAAEANTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHVENTAGFATRLMGVKVLVLDEADHLLDMGFRKEIERIISAIPKQRQTLLFSATVPPEVRQICHIALKRDHEFINTVEEGSEETHAQVQQMHLVSPLESHFSLLYALLKEHIADDVNYKVLVFCTTAMVTKLVAELLGELNLNVREIHSRKPQSYRTRVSDEFRQSTGLILVSSDVSARGVDYPDVTLVVQIGVPADRQQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPVSKAPVPLLDPEAKKKVERALAHIEMKTKESAYQAWLGYYNSNRSIGKDKYRLVELANEFSRTMGLDNPPAIPKLVLGKMGLKNIPGLRSK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68806" stop="68549"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVEVRVEEVEAEIVWSHFRREEGLEVIMGEKVKVEEVEARIGQSRFQGREGGLEVKWQVRVTIGVKAGLVVDMVEIWQHKVVMVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="68944" e_stop="68287"/>
            <exon e_start="67653" e_stop="67547"/>
            <exon e_start="67282" e_stop="67227"/>
            <exon e_start="65979" e_stop="65755"/>
            <exon e_start="64811" e_stop="64605"/>
            <exon e_start="64532" e_stop="64446"/>
            <exon e_start="64359" e_stop="64264"/>
            <exon e_start="63791" e_stop="63576"/>
            <exon e_start="63254" e_stop="63072"/>
            <exon e_start="62901" e_stop="62401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="0.953"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.634" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.536" e_score="1.000"/>
          <exon-intron don_prob="0.729" acc_prob="0.996" e_score="0.977"/>
          <exon-intron don_prob="0.979" acc_prob="0.808" e_score="0.969"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="0.977"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="0.984"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="68944" e_stop="68287" e_length="658"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68286" i_stop="67654" i_length="633"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67653" e_stop="67547" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67546" i_stop="67283" i_length="264"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67282" e_stop="67227" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.634">
            <gDNA_intron_boundary i_start="67226" i_stop="65980" i_length="1247"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65979" e_stop="65755" e_length="225"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65754" i_stop="64812" i_length="943"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64811" e_stop="64605" e_length="207"/>
          </exon>
          <intron i_serial="5" don_prob="0.965" acc_prob="0.536">
            <gDNA_intron_boundary i_start="64604" i_stop="64533" i_length="72"/>
          </intron>
          <exon e_serial="6" e_score="0.977">
            <gDNA_exon_boundary e_start="64532" e_stop="64446" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.729" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64445" i_stop="64360" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="0.969">
            <gDNA_exon_boundary e_start="64359" e_stop="64264" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.979" acc_prob="0.808">
            <gDNA_intron_boundary i_start="64263" i_stop="63792" i_length="472"/>
          </intron>
          <exon e_serial="8" e_score="0.977">
            <gDNA_exon_boundary e_start="63791" e_stop="63576" e_length="216"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="63575" i_stop="63255" i_length="321"/>
          </intron>
          <exon e_serial="9" e_score="0.984">
            <gDNA_exon_boundary e_start="63254" e_stop="63072" e_length="183"/>
          </exon>
          <intron i_serial="9" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="63071" i_stop="62902" i_length="170"/>
          </intron>
          <exon e_serial="10" e_score="0.946">
            <gDNA_exon_boundary e_start="62901" e_stop="62401" e_length="501"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68944" stop="68495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68944" stop="68540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68528" stop="68287"/>
              <exon start="67653" stop="67547"/>
              <exon start="67282" stop="67227"/>
              <exon start="65979" stop="65755"/>
              <exon start="64811" stop="64605"/>
              <exon start="64532" stop="64504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68487" stop="68287"/>
              <exon start="67653" stop="67547"/>
              <exon start="67282" stop="67227"/>
              <exon start="65979" stop="65926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67569" stop="67547"/>
              <exon start="67282" stop="67227"/>
              <exon start="65979" stop="65755"/>
              <exon start="64811" stop="64615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65838" stop="65755"/>
              <exon start="64811" stop="64605"/>
              <exon start="64532" stop="64446"/>
              <exon start="64359" stop="64264"/>
              <exon start="63791" stop="63586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65790" stop="65755"/>
              <exon start="64811" stop="64605"/>
              <exon start="64532" stop="64446"/>
              <exon start="64359" stop="64264"/>
              <exon start="63791" stop="63576"/>
              <exon start="63254" stop="63188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64809" stop="64605"/>
              <exon start="64532" stop="64446"/>
              <exon start="64359" stop="64264"/>
              <exon start="63791" stop="63576"/>
              <exon start="63254" stop="63215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64756" stop="64605"/>
              <exon start="64532" stop="64446"/>
              <exon start="64359" stop="64264"/>
              <exon start="63791" stop="63687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63193" stop="63072"/>
              <exon start="62901" stop="62465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63193" stop="63072"/>
              <exon start="62901" stop="62478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63089" stop="63072"/>
              <exon start="62901" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417283" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGGAATGCAGTCGAATTCAAGAAACGAAGGGAGGTTTGGAAATGACAGGGGGAGTAGATATGAGGGTGGAAGAGGTGATGGTGGTCGAGATCGAAAGGAGTCCTCCTCAAGGGGAGGAAGATTTGGAAGTGATGTAAGGAGTGGAAGTGAGGGTAGAAGAAGTGGAGGCCGAGATCGTATGGAGTCATTTTCGAAGGGAGGAAGGTTTGGAAGTGATAATGGGAGAGAAAGTGAAGGTAGAAGAAGTGGAGGCCAGGATCGGACAGAGTCGCTTCCAAGGAAGGGAGGGAGGTTTGGAAGTGAAATGGCAAGTTCGAGTGACAATAGGGGTAAAAGCAGGATTGGTAGTGGATATGGTAGAGATATGGCAGCACAAGGTGGTAATGGTAGGTTAGGGAGGAAAGAAGGGGCAGGTATGGGTCGAGGTAGTTCCATGCTGTTGGATGAAGATGATACCGATAATGAGGATGACGAAGAGGAAGAGGAGAATGGTTATAAGGGGTTCCGAGATTTGATTGACAGCGAGGAAGAAAGTGAAGAATCTGATGAAGACAATGAGGTCGAGGATGAAAAGATGGCCTCATTGGAGGAGGACAGTCCAAGGGCATCAAGCCCGAGCTCACATGGAAAAAGTGATTCCCACCTCACCGAAACCAG : GTTTGATCAGTTTCCTCTCTCTCCCTTGTCTCTGAAAGGAGTTAAAGATGCTGGATACAAAACGATGACTGTAGTGCAGGAGGCAACCCTTCCCATTATTCTAAAAG : GCAAGGACGTTCTGGCCAAGGCAAAGACTGGCACTGGGAAAACTGTAGCATTTTTG : CTTCCTTCAATTGAAGTTGTTGTAAAATCACCCCCCAACACCCGTGATCAAAAGAGGCCACCAATTCTGGTGCTTGTGATATGCCCTACCCGGGAGCTTGCAACTCAAGCAGCTGCCGAGGCCAACACCTTGTTAAAATATCACCCTTCAATTGGGGTTCAAGTTGTTATAGGCGGAACAAGGCTTGCACTTGAGCAGAAAAGGATGCAAGCAAATCCATGTCAG : ATACTTGTGGCGACACCTGGGAGACTCAGAGATCATGTAGAGAATACAGCAGGATTTGCTACTCGGTTGATGGGTGTTAAAGTGTTGGTCCTTGATGAAGCCGATCATTTGTTGGATATGGGATTCCGTAAAGAAATTGAGAGAATCATCTCTGCTATTCCAAAACAGCGCCAAACACTTCTCTTTTCTGCAACAGTTCCACCGGAG : GTCCGTCAAATTTGTCATATTGCTTTGAAAAGAGACCACGAATTTATCAATACTGTTGAGGAAGGCAGTGAAGAGACACATGCACAA : GTTCAGCAGATGCATCTGGTTTCTCCTCTAGAATCACACTTTTCCCTTCTTTATGCTCTACTAAAAGAGCACATTGCTGATGATGTTAACTATAAG : GTTCTTGTATTTTGCACAACTGCAATGGTAACAAAACTCGTTGCTGAACTTCTTGGTGAACTTAACTTAAACGTCCGGGAGATTCATTCTCGTAAGCCACAAAGCTATAGAACAAGGGTTTCAGATGAATTTCGCCAGTCAACAGGTCTTATTCTAGTTTCCTCAGATGTTTCTGCTCGTGGAGTGGATTATCCAGATGTTACCTTAGTTGTACAG : ATTGGAGTGCCAGCTGATAGACAGCAGTACATCCATCGTCTAGGTAGAACCGGACGGAAAGGAAAAGAAGGACAAGGCATTTTGTTGTTGGCTCCATGGGAGGAATTCTTCTTGTCTACAATTAAAGATTTGCCCGTATCAAAGGCACCTGTACCTCTGCTTGATCCAGAGGCCAAGAAAAAG : GTGGAACGTGCGTTAGCCCATATAGAAATGAAAACCAAAGAATCTGCATACCAGGCATGGCTTGGTTACTATAATTCCAACAGGTCTATCGGTAAGGACAAGTACAGACTTGTTGAACTTGCAAACGAGTTTAGTCGGACCATGGGGCTTGACAACCCTCCAGCAATTCCAAAGCTTGTTCTTGGGAAAATGGGATTGAAAAATATTCCTGGACTACGTTCCAAGTAATTGAGATAGTGTTGCTGCTTCTTCTCATACACATATATGCATACGAAGTGTATATATACACAGCATAGGCCGTGCAATGCAACAATTAATTTCGAGCTAAGTGCTGTTTTTACCCATTGTTTGTAATTTTTTTGCTAGGGAGGATTCAAAGCCTTGACAGAACATAAGTTGAGTTCCTTTTTTACTAATAGGAAATTTGGCCTTTCCTCTTTCTAGTTGAACTATTTTGTCTCTTCATTTATTAGTAAGTGGGAATTACAAACAGCCACAGTT</gDNA_template>
            <first_frame> V  E  C  S  R  I  Q  E  T  K  G  G  L  E  M  T  G  G  V  D  M  R  V  E  E  V  M  V  V  E  I  E  R  S  P  P  Q  G  E  E  D  L  E  V  M  *  G  V  E  V  R  V  E  E  V  E  A  E  I  V  W  S  H  F  R  R  E  E  G  L  E  V  I  M  G  E  K  V  K  V  E  E  V  E  A  R  I  G  Q  S  R  F  Q  G  R  E  G  G  L  E  V  K  W  Q  V  R  V  T  I  G  V  K  A  G  L  V  V  D  M  V  E  I  W  Q  H  K  V  V  M  V  G  *  G  G  K  K  G  Q  V  W  V  E  V  V  P  C  C  W  M  K  M  I  P  I  M  R  M  T  K  R  K  R  R  M  V  I  R  G  S  E  I  *  L  T  A  R  K  K  V  K  N  L  M  K  T  M  R  S  R  M  K  R  W  P  H  W  R  R  T  V  Q  G  H  Q  A  R  A  H  M  E  K  V  I  P  T  S  P  K  P   : G  L  I  S  F  L  S  L  P  C  L  *  K  E  L  K  M  L  D  T  K  R  *  L  *  C  R  R  Q  P  F  P  L  F  *  K  :  A  R  T  F  W  P  R  Q  R  L  A  L  G  K  L  *  H  F  C :   F  L  Q  L  K  L  L  *  N  H  P  P  T  P  V  I  K  R  G  H  Q  F  W  C  L  *  Y  A  L  P  G  S  L  Q  L  K  Q  L  P  R  P  T  P  C  *  N  I  T  L  Q  L  G  F  K  L  L  *  A  E  Q  G  L  H  L  S  R  K  G  C  K  Q  I  H  V  R :   Y  L  W  R  H  L  G  D  S  E  I  M  *  R  I  Q  Q  D  L  L  L  G  *  W  V  L  K  C  W  S  L  M  K  P  I  I  C  W  I  W  D  S  V  K  K  L  R  E  S  S  L  L  F  Q  N  S  A  K  H  F  S  F  L  Q  Q  F  H  R  R :   S  V  K  F  V  I  L  L  *  K  E  T  T  N  L  S  I  L  L  R  K  A  V  K  R  H  M  H  K :   F  S  R  C  I  W  F  L  L  *  N  H  T  F  P  F  F  M  L  Y  *  K  S  T  L  L  M  M  L  T  I  R :   F  L  Y  F  A  Q  L  Q  W  *  Q  N  S  L  L  N  F  L  V  N  L  T  *  T  S  G  R  F  I  L  V  S  H  K  A  I  E  Q  G  F  Q  M  N  F  A  S  Q  Q  V  L  F  *  F  P  Q  M  F  L  L  V  E  W  I  I  Q  M  L  P  *  L  Y  R :   L  E  C  Q  L  I  D  S  S  T  S  I  V  *  V  E  P  D  G  K  E  K  K  D  K  A  F  C  C  W  L  H  G  R  N  S  S  C  L  Q  L  K  I  C  P  Y  Q  R  H  L  Y  L  C  L  I  Q  R  P  R  K  R :   W  N  V  R  *  P  I  *  K  *  K  P  K  N  L  H  T  R  H  G  L  V  T  I  I  P  T  G  L  S  V  R  T  S  T  D  L  L  N  L  Q  T  S  L  V  G  P  W  G  L  T  T  L  Q  Q  F  Q  S  L  F  L  G  K  W  D  *  K  I  F  L  D  Y  V  P  S  N  *  D  S  V  A  A  S  S  H  T  H  I  C  I  R  S  V  Y  I  H  S  I  G  R  A  M  Q  Q  L  I  S  S  *  V  L  F  L  P  I  V  C  N  F  F  A  R  E  D  S  K  P  *  Q  N  I  S  *  V  P  F  L  L  I  G  N  L  A  F  P  L  S  S  *  T  I  L  S  L  H  L  L  V  S  G  N  Y  K  Q  P  Q   </first_frame>
            <second_frame>  W  N  A  V  E  F  K  K  R  R  E  V  W  K  *  Q  G  E  *  I  *  G  W  K  R  *  W  W  S  R  S  K  G  V  L  L  K  G  R  K  I  W  K  *  C  K  E  W  K  *  G  *  K  K  W  R  P  R  S  Y  G  V  I  F  E  G  R  K  V  W  K  *  *  W  E  R  K  *  R  *  K  K  W  R  P  G  S  D  R  V  A  S  K  E  G  R  E  V  W  K  *  N  G  K  F  E  *  Q  *  G  *  K  Q  D  W  *  W  I  W  *  R  Y  G  S  T  R  W  *  W  *  V  R  E  E  R  R  G  R  Y  G  S  R  *  F  H  A  V  G  *  R  *  Y  R  *  *  G  *  R  R  G  R  G  E  W  L  *  G  V  P  R  F  D  *  Q  R  G  R  K  *  R  I  *  *  R  Q  *  G  R  G  *  K  D  G  L  I  G  G  G  Q  S  K  G  I  K  P  E  L  T  W  K  K  *  F  P  P  H  R  N  Q  :  V  *  S  V  S  S  L  S  L  V  S  E  R  S  *  R  C  W  I  Q  N  D  D  C  S  A  G  G  N  P  S  H  Y  S  K  R :   Q  G  R  S  G  Q  G  K  D  W  H  W  E  N  C  S  I  F   : A  S  F  N  *  S  C  C  K  I  T  P  Q  H  P  *  S  K  E  A  T  N  S  G  A  C  D  M  P  Y  P  G  A  C  N  S  S  S  C  R  G  Q  H  L  V  K  I  S  P  F  N  W  G  S  S  C  Y  R  R  N  K  A  C  T  *  A  E  K  D  A  S  K  S  M  S   : D  T  C  G  D  T  W  E  T  Q  R  S  C  R  E  Y  S  R  I  C  Y  S  V  D  G  C  *  S  V  G  P  *  *  S  R  S  F  V  G  Y  G  I  P  *  R  N  *  E  N  H  L  C  Y  S  K  T  A  P  N  T  S  L  F  C  N  S  S  T  G   : G  P  S  N  L  S  Y  C  F  E  K  R  P  R  I  Y  Q  Y  C  *  G  R  Q  *  R  D  T  C  T   : S  S  A  D  A  S  G  F  S  S  R  I  T  L  F  P  S  L  C  S  T  K  R  A  H  C  *  *  C  *  L  *   : G  S  C  I  L  H  N  C  N  G  N  K  T  R  C  *  T  S  W  *  T  *  L  K  R  P  G  D  S  F  S  *  A  T  K  L  *  N  K  G  F  R  *  I  S  P  V  N  R  S  Y  S  S  F  L  R  C  F  C  S  W  S  G  L  S  R  C  Y  L  S  C  T   : D  W  S  A  S  *  *  T  A  V  H  P  S  S  R  *  N  R  T  E  R  K  R  R  T  R  H  F  V  V  G  S  M  G  G  I  L  L  V  Y  N  *  R  F  A  R  I  K  G  T  C  T  S  A  *  S  R  G  Q  E  K   : G  G  T  C  V  S  P  Y  R  N  E  N  Q  R  I  C  I  P  G  M  A  W  L  L  *  F  Q  Q  V  Y  R  *  G  Q  V  Q  T  C  *  T  C  K  R  V  *  S  D  H  G  A  *  Q  P  S  S  N  S  K  A  C  S  W  E  N  G  I  E  K  Y  S  W  T  T  F  Q  V  I  E  I  V  L  L  L  L  L  I  H  I  Y  A  Y  E  V  Y  I  Y  T  A  *  A  V  Q  C  N  N  *  F  R  A  K  C  C  F  Y  P  L  F  V  I  F  L  L  G  R  I  Q  S  L  D  R  T  *  V  E  F  L  F  Y  *  *  E  I  W  P  F  L  F  L  V  E  L  F  C  L  F  I  Y  *  *  V  G  I  T  N  S  H  S  </second_frame>
            <third_frame>   G  M  Q  S  N  S  R  N  E  G  R  F  G  N  D  R  G  S  R  Y  E  G  G  R  G  D  G  G  R  D  R  K  E  S  S  S  R  G  G  R  F  G  S  D  V  R  S  G  S  E  G  R  R  S  G  G  R  D  R  M  E  S  F  S  K  G  G  R  F  G  S  D  N  G  R  E  S  E  G  R  R  S  G  G  Q  D  R  T  E  S  L  P  R  K  G  G  R  F  G  S  E  M  A  S  S  S  D  N  R  G  K  S  R  I  G  S  G  Y  G  R  D  M  A  A  Q  G  G  N  G  R  L  G  R  K  E  G  A  G  M  G  R  G  S  S  M  L  L  D  E  D  D  T  D  N  E  D  D  E  E  E  E  E  N  G  Y  K  G  F  R  D  L  I  D  S  E  E  E  S  E  E  S  D  E  D  N  E  V  E  D  E  K  M  A  S  L  E  E  D  S  P  R  A  S  S  P  S  S  H  G  K  S  D  S  H  L  T  E  T  R :   F  D  Q  F  P  L  S  P  L  S  L  K  G  V  K  D  A  G  Y  K  T  M  T  V  V  Q  E  A  T  L  P  I  I  L  K   : G  K  D  V  L  A  K  A  K  T  G  T  G  K  T  V  A  F  L  :  L  P  S  I  E  V  V  V  K  S  P  P  N  T  R  D  Q  K  R  P  P  I  L  V  L  V  I  C  P  T  R  E  L  A  T  Q  A  A  A  E  A  N  T  L  L  K  Y  H  P  S  I  G  V  Q  V  V  I  G  G  T  R  L  A  L  E  Q  K  R  M  Q  A  N  P  C  Q  :  I  L  V  A  T  P  G  R  L  R  D  H  V  E  N  T  A  G  F  A  T  R  L  M  G  V  K  V  L  V  L  D  E  A  D  H  L  L  D  M  G  F  R  K  E  I  E  R  I  I  S  A  I  P  K  Q  R  Q  T  L  L  F  S  A  T  V  P  P  E  :  V  R  Q  I  C  H  I  A  L  K  R  D  H  E  F  I  N  T  V  E  E  G  S  E  E  T  H  A  Q  :  V  Q  Q  M  H  L  V  S  P  L  E  S  H  F  S  L  L  Y  A  L  L  K  E  H  I  A  D  D  V  N  Y  K  :  V  L  V  F  C  T  T  A  M  V  T  K  L  V  A  E  L  L  G  E  L  N  L  N  V  R  E  I  H  S  R  K  P  Q  S  Y  R  T  R  V  S  D  E  F  R  Q  S  T  G  L  I  L  V  S  S  D  V  S  A  R  G  V  D  Y  P  D  V  T  L  V  V  Q  :  I  G  V  P  A  D  R  Q  Q  Y  I  H  R  L  G  R  T  G  R  K  G  K  E  G  Q  G  I  L  L  L  A  P  W  E  E  F  F  L  S  T  I  K  D  L  P  V  S  K  A  P  V  P  L  L  D  P  E  A  K  K  K  :  V  E  R  A  L  A  H  I  E  M  K  T  K  E  S  A  Y  Q  A  W  L  G  Y  Y  N  S  N  R  S  I  G  K  D  K  Y  R  L  V  E  L  A  N  E  F  S  R  T  M  G  L  D  N  P  P  A  I  P  K  L  V  L  G  K  M  G  L  K  N  I  P  G  L  R  S  K  *  L  R  *  C  C  C  F  F  S  Y  T  Y  M  H  T  K  C  I  Y  T  Q  H  R  P  C  N  A  T  I  N  F  E  L  S  A  V  F  T  H  C  L  *  F  F  C  *  G  G  F  K  A  L  T  E  H  K  L  S  S  F  F  T  N  R  K  F  G  L  S  S  F  *  L  N  Y  F  V  S  S  F  I  S  K  W  E  L  Q  T  A  T  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68942" stop="68287"/>
                    <exon start="67653" stop="67547"/>
                    <exon start="67282" stop="67227"/>
                    <exon start="65979" stop="65755"/>
                    <exon start="64811" stop="64605"/>
                    <exon start="64532" stop="64446"/>
                    <exon start="64359" stop="64264"/>
                    <exon start="63791" stop="63576"/>
                    <exon start="63254" stop="63072"/>
                    <exon start="62901" stop="62674"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2058</number_coding_nucleotides>
                  <number_encoded_amino_acids>686</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMQSNSRNEGRFGNDRGSRYEGGRGDGGRDRKESSSRGGRFGSDVRSGSEGRRSGGRDRMESFSKGGRFGSDNGRESEGRRSGGQDRTESLPRKGGRFGSEMASSSDNRGKSRIGSGYGRDMAAQGGNGRLGRKEGAGMGRGSSMLLDEDDTDNEDDEEEEENGYKGFRDLIDSEEESEESDEDNEVEDEKMASLEEDSPRASSPSSHGKSDSHLTETRFDQFPLSPLSLKGVKDAGYKTMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPNTRDQKRPPILVLVICPTRELATQAAAEANTLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHVENTAGFATRLMGVKVLVLDEADHLLDMGFRKEIERIISAIPKQRQTLLFSATVPPEVRQICHIALKRDHEFINTVEEGSEETHAQVQQMHLVSPLESHFSLLYALLKEHIADDVNYKVLVFCTTAMVTKLVAELLGELNLNVREIHSRKPQSYRTRVSDEFRQSTGLILVSSDVSARGVDYPDVTLVVQIGVPADRQQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTIKDLPVSKAPVPLLDPEAKKKVERALAHIEMKTKESAYQAWLGYYNSNRSIGKDKYRLVELANEFSRTMGLDNPPAIPKLVLGKMGLKNIPGLRSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="65833" e_stop="65760"/>
            <exon e_start="64819" e_stop="64605"/>
            <exon e_start="64532" e_stop="64446"/>
            <exon e_start="64359" e_stop="64264"/>
            <exon e_start="63791" e_stop="63576"/>
            <exon e_start="63254" e_stop="63215"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.125" e_score="0.973"/>
          <exon-intron don_prob="0.965" acc_prob="0.536" e_score="0.972"/>
          <exon-intron don_prob="0.729" acc_prob="0.996" e_score="0.977"/>
          <exon-intron don_prob="0.979" acc_prob="0.808" e_score="0.969"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="0.964"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="65833" e_stop="65760" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.125">
            <gDNA_intron_boundary i_start="65759" i_stop="64820" i_length="940"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="64819" e_stop="64605" e_length="215"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.536">
            <gDNA_intron_boundary i_start="64604" i_stop="64533" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="64532" e_stop="64446" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.729" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64445" i_stop="64360" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="0.969">
            <gDNA_exon_boundary e_start="64359" e_stop="64264" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.808">
            <gDNA_intron_boundary i_start="64263" i_stop="63792" i_length="472"/>
          </intron>
          <exon e_serial="5" e_score="0.964">
            <gDNA_exon_boundary e_start="63791" e_stop="63576" e_length="216"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="63575" i_stop="63255" i_length="321"/>
          </intron>
          <exon e_serial="6" e_score="0.875">
            <gDNA_exon_boundary e_start="63254" e_stop="63215" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65833" stop="65760"/>
              <exon start="64819" stop="64605"/>
              <exon start="64532" stop="64446"/>
              <exon start="64359" stop="64264"/>
              <exon start="63791" stop="63595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64818" stop="64605"/>
              <exon start="64532" stop="64446"/>
              <exon start="64359" stop="64264"/>
              <exon start="63791" stop="63597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64809" stop="64605"/>
              <exon start="64532" stop="64446"/>
              <exon start="64359" stop="64264"/>
              <exon start="63791" stop="63576"/>
              <exon start="63254" stop="63215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64756" stop="64605"/>
              <exon start="64532" stop="64446"/>
              <exon start="64359" stop="64264"/>
              <exon start="63791" stop="63687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471283" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAATTGGGGTTCAAGTTGTTATAGGCGGAACAAGGCTTGCACTTGAGCAGAAAAGGATGCAAGCAAATCCAT : CGACTCAGATACTTGTGGCGACACCTGGGAGACTCAGAGATCATGTAGAGAATACAGCAGGATTTGCTACTCGGTTGATGGGTGTTAAAGTGTTGGTCCTTGATGAAGCCGATCATTTGTTGGATATGGGATTCCGTAAAGAAATTGAGAGAATCATCTCTGCTATTCCAAAACAGCGCCAAACACTTCTCTTTTCTGCAACAGTTCCACCGGAG : GTCCGTCAAATTTGTCATATTGCTTTGAAAAGAGACCACGAATTTATCAATACTGTTGAGGAAGGCAGTGAAGAGACACATGCACAA : GTTCAGCAGATGCATCTGGTTTCTCCTCTAGAATCACACTTTTCCCTTCTTTATGCTCTACTAAAAGAGCACATTGCTGATGATGTTAACTATAAG : GTTCTTGTATTTTGCACAACTGCAATGGTAACAAAACTCGTTGCTGAACTTCTTGGTGAACTTAACTTAAACGTCCGGGAGATTCATTCTCGTAAGCCACAAAGCTATAGAACAAGGGTTTCAGATGAATTTCGCCAGTCAACAGGTCTTATTCTAGTTTCCTCAGATGTTTCTGCTCGTGGAGTGGATTATCCAGATGTTACCTTAGTTGTACAG : ATTGGAGTGCCAGCTGATAGACAGCAGTACATCCATCGTC</gDNA_template>
            <first_frame> F  N  W  G  S  S  C  Y  R  R  N  K  A  C  T  *  A  E  K  D  A  S  K  S  I :   D  S  D  T  C  G  D  T  W  E  T  Q  R  S  C  R  E  Y  S  R  I  C  Y  S  V  D  G  C  *  S  V  G  P  *  *  S  R  S  F  V  G  Y  G  I  P  *  R  N  *  E  N  H  L  C  Y  S  K  T  A  P  N  T  S  L  F  C  N  S  S  T  G   : G  P  S  N  L  S  Y  C  F  E  K  R  P  R  I  Y  Q  Y  C  *  G  R  Q  *  R  D  T  C  T   : S  S  A  D  A  S  G  F  S  S  R  I  T  L  F  P  S  L  C  S  T  K  R  A  H  C  *  *  C  *  L  *   : G  S  C  I  L  H  N  C  N  G  N  K  T  R  C  *  T  S  W  *  T  *  L  K  R  P  G  D  S  F  S  *  A  T  K  L  *  N  K  G  F  R  *  I  S  P  V  N  R  S  Y  S  S  F  L  R  C  F  C  S  W  S  G  L  S  R  C  Y  L  S  C  T   : D  W  S  A  S  *  *  T  A  V  H  P  S   </first_frame>
            <second_frame>  S  I  G  V  Q  V  V  I  G  G  T  R  L  A  L  E  Q  K  R  M  Q  A  N  P   : S  T  Q  I  L  V  A  T  P  G  R  L  R  D  H  V  E  N  T  A  G  F  A  T  R  L  M  G  V  K  V  L  V  L  D  E  A  D  H  L  L  D  M  G  F  R  K  E  I  E  R  I  I  S  A  I  P  K  Q  R  Q  T  L  L  F  S  A  T  V  P  P  E  :  V  R  Q  I  C  H  I  A  L  K  R  D  H  E  F  I  N  T  V  E  E  G  S  E  E  T  H  A  Q  :  V  Q  Q  M  H  L  V  S  P  L  E  S  H  F  S  L  L  Y  A  L  L  K  E  H  I  A  D  D  V  N  Y  K  :  V  L  V  F  C  T  T  A  M  V  T  K  L  V  A  E  L  L  G  E  L  N  L  N  V  R  E  I  H  S  R  K  P  Q  S  Y  R  T  R  V  S  D  E  F  R  Q  S  T  G  L  I  L  V  S  S  D  V  S  A  R  G  V  D  Y  P  D  V  T  L  V  V  Q  :  I  G  V  P  A  D  R  Q  Q  Y  I  H  R  </second_frame>
            <third_frame>   Q  L  G  F  K  L  L  *  A  E  Q  G  L  H  L  S  R  K  G  C  K  Q  I  H  :  R  L  R  Y  L  W  R  H  L  G  D  S  E  I  M  *  R  I  Q  Q  D  L  L  L  G  *  W  V  L  K  C  W  S  L  M  K  P  I  I  C  W  I  W  D  S  V  K  K  L  R  E  S  S  L  L  F  Q  N  S  A  K  H  F  S  F  L  Q  Q  F  H  R  R :   S  V  K  F  V  I  L  L  *  K  E  T  T  N  L  S  I  L  L  R  K  A  V  K  R  H  M  H  K :   F  S  R  C  I  W  F  L  L  *  N  H  T  F  P  F  F  M  L  Y  *  K  S  T  L  L  M  M  L  T  I  R :   F  L  Y  F  A  Q  L  Q  W  *  Q  N  S  L  L  N  F  L  V  N  L  T  *  T  S  G  R  F  I  L  V  S  H  K  A  I  E  Q  G  F  Q  M  N  F  A  S  Q  Q  V  L  F  *  F  P  Q  M  F  L  L  V  E  W  I  I  Q  M  L  P  *  L  Y  R :   L  E  C  Q  L  I  D  S  S  T  S  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65832" stop="65760"/>
                    <exon start="64819" stop="64605"/>
                    <exon start="64532" stop="64446"/>
                    <exon start="64359" stop="64264"/>
                    <exon start="63791" stop="63576"/>
                    <exon start="63254" stop="63216"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIGVQVVIGGTRLALEQKRMQANPSTQILVATPGRLRDHVENTAGFATRLMGVKVLVLDEADHLLDMGFRKEIERIISAIPKQRQTLLFSATVPPEVRQICHIALKRDHEFINTVEEGSEETHAQVQQMHLVSPLESHFSLLYALLKEHIADDVNYKVLVFCTTAMVTKLVAELLGELNLNVREIHSRKPQSYRTRVSDEFRQSTGLILVSSDVSARGVDYPDVTLVVQIGVPADRQQYIHR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="71346" PGL_stop="70056"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71346" e_stop="71153"/>
            <exon e_start="71064" e_stop="70925"/>
            <exon e_start="70766" e_stop="70584"/>
            <exon e_start="70484" e_stop="70365"/>
            <exon e_start="70229" e_stop="70056"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.827" acc_prob="0.996" e_score="0.974"/>
          <exon-intron don_prob="0.961" acc_prob="0.882" e_score="0.964"/>
          <exon-intron don_prob="0.683" acc_prob="0.997" e_score="0.978"/>
          <exon-intron don_prob="0.919" acc_prob="0.926" e_score="0.992"/>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="71346" e_stop="71153" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.827" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71152" i_stop="71065" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="71064" e_stop="70925" e_length="140"/>
          </exon>
          <intron i_serial="2" don_prob="0.961" acc_prob="0.882">
            <gDNA_intron_boundary i_start="70924" i_stop="70767" i_length="158"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="70766" e_stop="70584" e_length="183"/>
          </exon>
          <intron i_serial="3" don_prob="0.683" acc_prob="0.997">
            <gDNA_intron_boundary i_start="70583" i_stop="70485" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="70484" e_stop="70365" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.919" acc_prob="0.926">
            <gDNA_intron_boundary i_start="70364" i_stop="70230" i_length="135"/>
          </intron>
          <exon e_serial="5" e_score="0.937">
            <gDNA_exon_boundary e_start="70229" e_stop="70056" e_length="174"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71346" stop="71153"/>
              <exon start="71064" stop="70925"/>
              <exon start="70766" stop="70584"/>
              <exon start="70484" stop="70365"/>
              <exon start="70229" stop="70068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71176" stop="71153"/>
              <exon start="71064" stop="70925"/>
              <exon start="70766" stop="70584"/>
              <exon start="70484" stop="70365"/>
              <exon start="70229" stop="70056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGGTTGGCACTGTTGGTCCTCCTTTACCAATTATAGATGTGTGCCTAGAGTCTGTTCCTGAAATGGGGTATGATGCCCTTGGAGATACCCCTCGTGGAGAGATATGCATAAGAGGAAAGTGTTTATTCTCAGGATACTATAAGCGTGAAGACCTCACCAAGGAGGTGTTGGTTGATGGATGGTTCCACACAG : GTGATGTCGGTGAATGGCAGCCGGATGGGAGCATGAAAATTGTTGACCGCAAGAAAAACATCTTCAAGCTCTCCCAAGGAGAATATGTTGCCGTTGAGAATCTGGAGGGCATTTATTCTCTTGCCTCTAGTGTTGATTCA : ATATGGATCTATGGTAGTAGCTATGAGTCATTTCTTGTTGCTGTCGTGAATCCCAATATGGAAGCTCTTCGTTCCTGGGCCAATGAGAATGGAATGACTGGGGATTTCGATACTATATGTGAGAACCCAAAGGCAAAAGCATATATCCTATCAGAACTAACCAATATTGCTAAGGAAAAAAAG : TTGAAAGGCTTTGAATTTATCAAAGCTGTGCACCTTGACCCTGTACCATTTGACATGGAGCGTGAACTTATAACCCCGACTCACAAGAAAAAGAGAGCCCAGTTTCTCAAATACTACCAG : AACAACATTGATACACTGTACAAAAACACAAGATAAACAGCTAGACACCTTGACTTCAAGTTCGAGCTGGAGAAAAGTAAAAATGTATATGATGTCAAACTCTGCATGCAGTTTTATTCAGCTAATATTTATCAGTTGTAGTTCATTGTTATTTTTACCTTGTAAAACTCCAAT</gDNA_template>
            <first_frame> N  G  W  H  C  W  S  S  F  T  N  Y  R  C  V  P  R  V  C  S  *  N  G  V  *  C  P  W  R  Y  P  S  W  R  D  M  H  K  R  K  V  F  I  L  R  I  L  *  A  *  R  P  H  Q  G  G  V  G  *  W  M  V  P  H  R :   *  C  R  *  M  A  A  G  W  E  H  E  N  C  *  P  Q  E  K  H  L  Q  A  L  P  R  R  I  C  C  R  *  E  S  G  G  H  L  F  S  C  L  *  C  *  F   : N  M  D  L  W  *  *  L  *  V  I  S  C  C  C  R  E  S  Q  Y  G  S  S  S  F  L  G  Q  *  E  W  N  D  W  G  F  R  Y  Y  M  *  E  P  K  G  K  S  I  Y  P  I  R  T  N  Q  Y  C  *  G  K  K   : V  E  R  L  *  I  Y  Q  S  C  A  P  *  P  C  T  I  *  H  G  A  *  T  Y  N  P  D  S  Q  E  K  E  S  P  V  S  Q  I  L  P   : E  Q  H  *  Y  T  V  Q  K  H  K  I  N  S  *  T  P  *  L  Q  V  R  A  G  E  K  *  K  C  I  *  C  Q  T  L  H  A  V  L  F  S  *  Y  L  S  V  V  V  H  C  Y  F  Y  L  V  K  L  Q  </first_frame>
            <second_frame>  M  V  G  T  V  G  P  P  L  P  I  I  D  V  C  L  E  S  V  P  E  M  G  Y  D  A  L  G  D  T  P  R  G  E  I  C  I  R  G  K  C  L  F  S  G  Y  Y  K  R  E  D  L  T  K  E  V  L  V  D  G  W  F  H  T   : G  D  V  G  E  W  Q  P  D  G  S  M  K  I  V  D  R  K  K  N  I  F  K  L  S  Q  G  E  Y  V  A  V  E  N  L  E  G  I  Y  S  L  A  S  S  V  D  S  :  I  W  I  Y  G  S  S  Y  E  S  F  L  V  A  V  V  N  P  N  M  E  A  L  R  S  W  A  N  E  N  G  M  T  G  D  F  D  T  I  C  E  N  P  K  A  K  A  Y  I  L  S  E  L  T  N  I  A  K  E  K  K  :  L  K  G  F  E  F  I  K  A  V  H  L  D  P  V  P  F  D  M  E  R  E  L  I  T  P  T  H  K  K  K  R  A  Q  F  L  K  Y  Y  Q  :  N  N  I  D  T  L  Y  K  N  T  R  *  T  A  R  H  L  D  F  K  F  E  L  E  K  S  K  N  V  Y  D  V  K  L  C  M  Q  F  Y  S  A  N  I  Y  Q  L  *  F  I  V  I  F  T  L  *  N  S  N </second_frame>
            <third_frame>   W  L  A  L  L  V  L  L  Y  Q  L  *  M  C  A  *  S  L  F  L  K  W  G  M  M  P  L  E  I  P  L  V  E  R  Y  A  *  E  E  S  V  Y  S  Q  D  T  I  S  V  K  T  S  P  R  R  C  W  L  M  D  G  S  T  Q  :  V  M  S  V  N  G  S  R  M  G  A  *  K  L  L  T  A  R  K  T  S  S  S  S  P  K  E  N  M  L  P  L  R  I  W  R  A  F  I  L  L  P  L  V  L  I  Q :   Y  G  S  M  V  V  A  M  S  H  F  L  L  L  S  *  I  P  I  W  K  L  F  V  P  G  P  M  R  M  E  *  L  G  I  S  I  L  Y  V  R  T  Q  R  Q  K  H  I  S  Y  Q  N  *  P  I  L  L  R  K  K  S :   *  K  A  L  N  L  S  K  L  C  T  L  T  L  Y  H  L  T  W  S  V  N  L  *  P  R  L  T  R  K  R  E  P  S  F  S  N  T  T  R :   T  T  L  I  H  C  T  K  T  Q  D  K  Q  L  D  T  L  T  S  S  S  S  W  R  K  V  K  M  Y  M  M  S  N  S  A  C  S  F  I  Q  L  I  F  I  S  C  S  S  L  L  F  L  P  C  K  T  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71345" stop="71153"/>
                    <exon start="71064" stop="70925"/>
                    <exon start="70766" stop="70584"/>
                    <exon start="70484" stop="70365"/>
                    <exon start="70229" stop="70194"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MVGTVGPPLPIIDVCLESVPEMGYDALGDTPRGEICIRGKCLFSGYYKREDLTKEVLVDGWFHTGDVGEWQPDGSMKIVDRKKNIFKLSQGEYVAVENLEGIYSLASSVDSIWIYGSSYESFLVAVVNPNMEALRSWANENGMTGDFDTICENPKAKAYILSELTNIAKEKKLKGFEFIKAVHLDPVPFDMERELITPTHKKKRAQFLKYYQNNIDTLYKNTR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="76641" PGL_stop="74359"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76641" e_stop="76513"/>
            <exon e_start="75695" e_stop="75632"/>
            <exon e_start="75540" e_stop="75451"/>
            <exon e_start="75259" e_stop="75203"/>
            <exon e_start="75000" e_stop="74952"/>
            <exon e_start="74694" e_stop="74618"/>
            <exon e_start="74485" e_stop="74446"/>
            <exon e_start="74364" e_stop="74359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.914" acc_prob="0.998" e_score="0.938"/>
          <exon-intron don_prob="0.997" acc_prob="0.908" e_score="0.953"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="0.967"/>
          <exon-intron don_prob="0.998" acc_prob="0.965" e_score="0.982"/>
          <exon-intron don_prob="0.969" acc_prob="0.969" e_score="0.980"/>
          <exon-intron don_prob="1.000" acc_prob="0.782" e_score="0.948"/>
          <exon-intron don_prob="0.974" acc_prob="0.943" e_score="0.975"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="76641" e_stop="76513" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.914" acc_prob="0.998">
            <gDNA_intron_boundary i_start="76512" i_stop="75696" i_length="817"/>
          </intron>
          <exon e_serial="2" e_score="0.953">
            <gDNA_exon_boundary e_start="75695" e_stop="75632" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.908">
            <gDNA_intron_boundary i_start="75631" i_stop="75541" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="0.967">
            <gDNA_exon_boundary e_start="75540" e_stop="75451" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="75450" i_stop="75260" i_length="191"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="75259" e_stop="75203" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.965">
            <gDNA_intron_boundary i_start="75202" i_stop="75001" i_length="202"/>
          </intron>
          <exon e_serial="5" e_score="0.980">
            <gDNA_exon_boundary e_start="75000" e_stop="74952" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.969">
            <gDNA_intron_boundary i_start="74951" i_stop="74695" i_length="257"/>
          </intron>
          <exon e_serial="6" e_score="0.948">
            <gDNA_exon_boundary e_start="74694" e_stop="74618" e_length="77"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.782">
            <gDNA_intron_boundary i_start="74617" i_stop="74486" i_length="132"/>
          </intron>
          <exon e_serial="7" e_score="0.975">
            <gDNA_exon_boundary e_start="74485" e_stop="74446" e_length="40"/>
          </exon>
          <intron i_serial="7" don_prob="0.974" acc_prob="0.943">
            <gDNA_intron_boundary i_start="74445" i_stop="74365" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="74364" e_stop="74359" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76641" stop="76513"/>
              <exon start="75695" stop="75632"/>
              <exon start="75540" stop="75451"/>
              <exon start="75259" stop="75203"/>
              <exon start="75000" stop="74952"/>
              <exon start="74694" stop="74618"/>
              <exon start="74485" stop="74446"/>
              <exon start="74364" stop="74359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430950" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTGAAAAAGCTAAAGAAGTGAGATCAAATGGAAGGCCGTCAAGAGGCCCTGTTTATCGTAATGTGTTAGCCAAAGATGGTTTTAGGCCTTTATCTCAATCCCTTCAAAGTTGTTGGGATATTTTCTG : TGAGTCTGTCAGAAAATTTCCACATAACCGAATGTTAGGTGAGCGGGAAATGTCTCATGGTCAG : GCAGGTAAATACATTTGGTTAACTTATAGGGAGGTGTATGATCTCGTGTTAAAAGTTGGAGCTTCTATGCGTGTCTGCGGTGTTAAGCAA : GGTGGAAAATGTGGTATATACGGGGCCAATTGCTCGAACTGGGTAATAAGCATGCAG : GCCTGCAATGCTCTTGGTCTTTATTGCGTCCCCTTATATGACACTCTAG : GCGCTGGTGCAGTAGAGTATATCATTTGCCATGCAGAAGTTTCTGTTGCTTTTGCAGAGGAAACTAAAATTTTTGAG : GTGCTGAAAGCTTTTCCTAATGCTGGAAAGTTCCTGAAAA : GTCTCA</gDNA_template>
            <first_frame> S  *  K  S  *  R  S  E  I  K  W  K  A  V  K  R  P  C  L  S  *  C  V  S  Q  R  W  F  *  A  F  I  S  I  P  S  K  L  L  G  Y  F  L  :  *  V  C  Q  K  I  S  T  *  P  N  V  R  *  A  G  N  V  S  W  S   : G  R  *  I  H  L  V  N  L  *  G  G  V  *  S  R  V  K  S  W  S  F  Y  A  C  L  R  C  *  A   : R  W  K  M  W  Y  I  R  G  Q  L  L  E  L  G  N  K  H  A   : G  L  Q  C  S  W  S  L  L  R  P  L  I  *  H  S  R :   R  W  C  S  R  V  Y  H  L  P  C  R  S  F  C  C  F  C  R  G  N  *  N  F  *   : G  A  E  S  F  S  *  C  W  K  V  P  E  K :   S   </first_frame>
            <second_frame>  V  E  K  A  K  E  V  R  S  N  G  R  P  S  R  G  P  V  Y  R  N  V  L  A  K  D  G  F  R  P  L  S  Q  S  L  Q  S  C  W  D  I  F  C :   E  S  V  R  K  F  P  H  N  R  M  L  G  E  R  E  M  S  H  G  Q  :  A  G  K  Y  I  W  L  T  Y  R  E  V  Y  D  L  V  L  K  V  G  A  S  M  R  V  C  G  V  K  Q  :  G  G  K  C  G  I  Y  G  A  N  C  S  N  W  V  I  S  M  Q  :  A  C  N  A  L  G  L  Y  C  V  P  L  Y  D  T  L   : G  A  G  A  V  E  Y  I  I  C  H  A  E  V  S  V  A  F  A  E  E  T  K  I  F  E  :  V  L  K  A  F  P  N  A  G  K  F  L  K   : S  L  </second_frame>
            <third_frame>   L  K  K  L  K  K  *  D  Q  M  E  G  R  Q  E  A  L  F  I  V  M  C  *  P  K  M  V  L  G  L  Y  L  N  P  F  K  V  V  G  I  F  S   : V  S  L  S  E  N  F  H  I  T  E  C  *  V  S  G  K  C  L  M  V  R :   Q  V  N  T  F  G  *  L  I  G  R  C  M  I  S  C  *  K  L  E  L  L  C  V  S  A  V  L  S  K :   V  E  N  V  V  Y  T  G  P  I  A  R  T  G  *  *  A  C  R :   P  A  M  L  L  V  F  I  A  S  P  Y  M  T  L  *  :  A  L  V  Q  *  S  I  S  F  A  M  Q  K  F  L  L  L  L  Q  R  K  L  K  F  L  R :   C  *  K  L  F  L  M  L  E  S  S  *  K  :  V  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76640" stop="76513"/>
                    <exon start="75695" stop="75632"/>
                    <exon start="75540" stop="75451"/>
                    <exon start="75259" stop="75203"/>
                    <exon start="75000" stop="74952"/>
                    <exon start="74694" stop="74618"/>
                    <exon start="74485" stop="74446"/>
                    <exon start="74364" stop="74360"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEKAKEVRSNGRPSRGPVYRNVLAKDGFRPLSQSLQSCWDIFCESVRKFPHNRMLGEREMSHGQAGKYIWLTYREVYDLVLKVGASMRVCGVKQGGKCGIYGANCSNWVISMQACNALGLYCVPLYDTLGAGAVEYIICHAEVSVAFAEETKIFEVLKAFPNAGKFLKSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="79997" PGL_stop="79632"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79997" e_stop="79632"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="79997" e_stop="79632" e_length="366"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79997" stop="79632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607236" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTCCAGCTTTTATGAAGATTATAGATATGTATATTTTTTTAGAATTTTTTCTTGTGTTACAATATTCAAGCAAAAGTTTTTCAAGATGAAGAAGAAAGGTTAAAGGTGGTGTAAGATTCATCAAAAGAGATGATTAAAAATTAATTTGATACAAGTCATCAATATGAAGAAGAAAGTTTAACAGTGCTGGAAGATTCATCAAGAGTTGGTCAGAGTAAAATTTGAAAAAGTAGAAGTTTCAATAATTTACAAATATATAGATGCACTTATTGTTGCTTATATATTTTTTCAATTAATTATTTATCCATCAAGATATGTATCCTTCAAGAACAAGATTATATTACAAAGCATACTTTTTGT</gDNA_template>
            <first_frame> F  F  F  Q  L  L  *  R  L  *  I  C  I  F  F  *  N  F  F  L  C  Y  N  I  Q  A  K  V  F  Q  D  E  E  E  R  L  K  V  V  *  D  S  S  K  E  M  I  K  N  *  F  D  T  S  H  Q  Y  E  E  E  S  L  T  V  L  E  D  S  S  R  V  G  Q  S  K  I  *  K  S  R  S  F  N  N  L  Q  I  Y  R  C  T  Y  C  C  L  Y  I  F  S  I  N  Y  L  S  I  K  I  C  I  L  Q  E  Q  D  Y  I  T  K  H  T  F  C </first_frame>
            <second_frame>  F  F  S  S  F  Y  E  D  Y  R  Y  V  Y  F  F  R  I  F  S  C  V  T  I  F  K  Q  K  F  F  K  M  K  K  K  G  *  R  W  C  K  I  H  Q  K  R  *  L  K  I  N  L  I  Q  V  I  N  M  K  K  K  V  *  Q  C  W  K  I  H  Q  E  L  V  R  V  K  F  E  K  V  E  V  S  I  I  Y  K  Y  I  D  A  L  I  V  A  Y  I  F  F  Q  L  I  I  Y  P  S  R  Y  V  S  F  K  N  K  I  I  L  Q  S  I  L  F   </second_frame>
            <third_frame>   F  F  P  A  F  M  K  I  I  D  M  Y  I  F  L  E  F  F  L  V  L  Q  Y  S  S  K  S  F  S  R  *  R  R  K  V  K  G  G  V  R  F  I  K  R  D  D  *  K  L  I  *  Y  K  S  S  I  *  R  R  K  F  N  S  A  G  R  F  I  K  S  W  S  E  *  N  L  K  K  *  K  F  Q  *  F  T  N  I  *  M  H  L  L  L  L  I  Y  F  F  N  *  L  F  I  H  Q  D  M  Y  P  S  R  T  R  L  Y  Y  K  A  Y  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0108J06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="91745" PGL_stop="92067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91745" e_stop="92067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="91745" e_stop="92067" e_length="323"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91745" stop="92067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91745" stop="92036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAACAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTTGCAAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGTG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  T  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  C  K  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E   </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  N  C  I  I  R  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  S  </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  N  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  L  Q  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  S  V  Y  K  A  R  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91748" stop="91948"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVCILHNYKCITRRYMFFSLYTKTETQYIHFCCIKLEKIVFHCNCIICKLYNSLAFFSAIFEVKCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="93166" PGL_stop="92270"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93166" e_stop="92951"/>
            <exon e_start="92289" e_stop="92270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.917"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="93166" e_stop="92951" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="92950" i_stop="92290" i_length="661"/>
          </intron>
          <exon e_serial="2" e_score="0.800">
            <gDNA_exon_boundary e_start="92289" e_stop="92270" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93166" stop="92951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93130" stop="92951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93125" stop="92951"/>
              <exon start="92289" stop="92270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226869" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTATGATCCCAAACGCTTTCAGATTGGCTCACAACAATGTCACACAGGGTATACTCTGCCTCCTGTTGGACATACCACTACTTGTTAGTGCAATGGATCTATTATATGTATAAGTGATATATGACATTTGAAAAAATCTCAATCTTTAATAAAAAGTTAAAATTCTATGACTACCACAAATTAAAAAGTTGTGGTAGTGGTAGTATTGGTACTAA : AATAAAAAAAACAAATACAA</gDNA_template>
            <first_frame> I  M  I  P  N  A  F  R  L  A  H  N  N  V  T  Q  G  I  L  C  L  L  L  D  I  P  L  L  V  S  A  M  D  L  L  Y  V  *  V  I  Y  D  I  *  K  N  L  N  L  *  *  K  V  K  I  L  *  L  P  Q  I  K  K  L  W  *  W  *  Y  W  Y  *  :  N  K  K  N  K  Y   </first_frame>
            <second_frame>  L  *  S  Q  T  L  S  D  W  L  T  T  M  S  H  R  V  Y  S  A  S  C  W  T  Y  H  Y  L  L  V  Q  W  I  Y  Y  M  Y  K  *  Y  M  T  F  E  K  I  S  I  F  N  K  K  L  K  F  Y  D  Y  H  K  L  K  S  C  G  S  G  S  I  G  T  K :   I  K  K  T  N  T  </second_frame>
            <third_frame>   Y  D  P  K  R  F  Q  I  G  S  Q  Q  C  H  T  G  Y  T  L  P  P  V  G  H  T  T  T  C  *  C  N  G  S  I  I  C  I  S  D  I  *  H  L  K  K  S  Q  S  L  I  K  S  *  N  S  M  T  T  T  N  *  K  V  V  V  V  V  V  L  V  L   : K  *  K  K  Q  I  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0108J06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="92588" PGL_stop="93390"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92588" e_stop="92607"/>
            <exon e_start="92955" e_stop="93390"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.700"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.700">
            <gDNA_exon_boundary e_start="92588" e_stop="92607" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="92608" i_stop="92954" i_length="347"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="92955" e_stop="93390" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92588" stop="92607"/>
              <exon start="92955" stop="93390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229096" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAGGTTTTTTTTTTTAGAG : TACCAATACTACCACTACCACAACTTTTTAATTTGTGGTAGTCATAGAATTTTAACTTTTTATTAAAGATTGAGATTTTTTCAAATGTCATATATCACTTATACATATAATAGATCCATTGCACTAACAAGTAGTGGTATGTCCAACAGGAGGCAGAGTATACCCTGTGTGACATTGTTGTGAGCCAATCTGAAAGCGTTTGGGATCATAATTCGTATGTACAAGTCTATTCTTTATACACTTGCAAACAGCAGAATAATCGCCGCGCTTTTTCATCATGTTACTTATATCTATCAGTCCTCTGCAGCATCTGCCTGATGGCTTGATCGAATGATATCTCCCTTGAATGTACGAAAGACAAGGGGCTAGCCTTTTCGAAACTGTTTCACAAGAAGGTTTGCTCGTTCCTGGTGTTGCTAAAACAAACAACAGAATG</gDNA_template>
            <first_frame> I  G  F  F  F  *  S :   T  N  T  T  T  T  T  T  F  *  F  V  V  V  I  E  F  *  L  F  I  K  D  *  D  F  F  K  C  H  I  S  L  I  H  I  I  D  P  L  H  *  Q  V  V  V  C  P  T  G  G  R  V  Y  P  V  *  H  C  C  E  P  I  *  K  R  L  G  S  *  F  V  C  T  S  L  F  F  I  H  L  Q  T  A  E  *  S  P  R  F  F  I  M  L  L  I  S  I  S  P  L  Q  H  L  P  D  G  L  I  E  *  Y  L  P  *  M  Y  E  R  Q  G  A  S  L  F  E  T  V  S  Q  E  G  L  L  V  P  G  V  A  K  T  N  N  R  M </first_frame>
            <second_frame>  *  V  F  F  F  R   : V  P  I  L  P  L  P  Q  L  F  N  L  W  *  S  *  N  F  N  F  L  L  K  I  E  I  F  S  N  V  I  Y  H  L  Y  I  *  *  I  H  C  T  N  K  *  W  Y  V  Q  Q  E  A  E  Y  T  L  C  D  I  V  V  S  Q  S  E  S  V  W  D  H  N  S  Y  V  Q  V  Y  S  L  Y  T  C  K  Q  Q  N  N  R  R  A  F  S  S  C  Y  L  Y  L  S  V  L  C  S  I  C  L  M  A  *  S  N  D  I  S  L  E  C  T  K  D  K  G  L  A  F  S  K  L  F  H  K  K  V  C  S  F  L  V  L  L  K  Q  T  T  E   </second_frame>
            <third_frame>   R  F  F  F  L  E  :  Y  Q  Y  Y  H  Y  H  N  F  L  I  C  G  S  H  R  I  L  T  F  Y  *  R  L  R  F  F  Q  M  S  Y  I  T  Y  T  Y  N  R  S  I  A  L  T  S  S  G  M  S  N  R  R  Q  S  I  P  C  V  T  L  L  *  A  N  L  K  A  F  G  I  I  I  R  M  Y  K  S  I  L  Y  T  L  A  N  S  R  I  I  A  A  L  F  H  H  V  T  Y  I  Y  Q  S  S  A  A  S  A  *  W  L  D  R  M  I  S  P  L  N  V  R  K  T  R  G  *  P  F  R  N  C  F  T  R  R  F  A  R  S  W  C  C  *  N  K  Q  Q  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0108J06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="98492" PGL_stop="102506"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98492" e_stop="99310"/>
            <exon e_start="100382" e_stop="100958"/>
            <exon e_start="102170" e_stop="102506"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.999"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.950"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="98492" e_stop="99310" e_length="819"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="99311" i_stop="100381" i_length="1071"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="100382" e_stop="100958" e_length="577"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="100959" i_stop="102169" i_length="1211"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102170" e_stop="102506" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98492" stop="99052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98500" stop="98861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98513" stop="98950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98517" stop="99140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98518" stop="99040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98518" stop="98873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98522" stop="99123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98525" stop="99064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98529" stop="99064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98538" stop="99310"/>
              <exon start="100382" stop="100467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98542" stop="99078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98566" stop="98874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98592" stop="98888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98609" stop="99310"/>
              <exon start="100382" stop="100428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98884" stop="99310"/>
              <exon start="100382" stop="100435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98916" stop="99310"/>
              <exon start="100382" stop="100509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99054" stop="99310"/>
              <exon start="100382" stop="100554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99105" stop="99310"/>
              <exon start="100382" stop="100662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99266" stop="99310"/>
              <exon start="100382" stop="100958"/>
              <exon start="102170" stop="102226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99286" stop="99310"/>
              <exon start="100382" stop="100871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100408" stop="100958"/>
              <exon start="102170" stop="102311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100408" stop="100958"/>
              <exon start="102170" stop="102311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100544" stop="100958"/>
              <exon start="102170" stop="102482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426403" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100565" stop="100958"/>
              <exon start="102170" stop="102482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576740" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100576" stop="100958"/>
              <exon start="102170" stop="102482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429657" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100664" stop="100958"/>
              <exon start="102170" stop="102459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100738" stop="100958"/>
              <exon start="102170" stop="102506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100797" stop="100958"/>
              <exon start="102170" stop="102506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCAAATTTAGATTTCTCTTTCCCCCAAATCTCAATCGCCGGCGAAGAAGCGCGACACTACCAAAATCAATCGACCGGCATCAATCAACCGACAATGGAGATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAGAGAAATTTTCCGGTTGTGGTGAATTTGTTGCTTCGGCTAAGGGGTGGTAAAGGAGGCTTTGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGAGGCATGTGAATGCGGAAAAGAAGCTGGAAGAGTGGAGAGCAGAAGCAGAAGAGAGGAAATTGGAGAAGATGGCGGATGAGTTTCTTAAGAAGAATGCAAAGGAAGCTGCGAAGAAAGGTAAAAAGGGTGCTACTGGAAGTAACACGGATAAGTATGTGCAGAAGTATAGGGAGGATTCTGCTAAGTGTATGGAGGAAGTGGATAGGTCAGTTAGGGAGTCCCTCAAGGGATTCGTGTCATCTAAAAGGAAGGGGGTTGAGCTCAATGAATCAGAGTCCAAAAAGCTCAAGATATG : GAAGGGTAAGAGGATAATGGGTGATAGTGATAGCGAAGATCTAGATGATGATGACTGTGATGAAGAAGAGGAAGAGAAAGAGAAATCCATCGTCATAGATAATGGGGGCAATTCAGACTCCAATGGAGAAGCAGAGGGAAGTTTGGATTCTGTAACTGGCAGAAAAGTTGATGGTGGTGCATCTGAGAGTGGCTCCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAACCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAAGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGCTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGTGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTGCTTCTGAGCCAATTGTTGTGGAGGGGAGCTCTGGTGTGAAAGAAAACAATGCTGCAAAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGAGTTAGAAAAACCTTTGAATTTTGAGCAGTTTAGTTCAGCAGCGGAACTGGAG : GTACTCGGCATGGAGAAGTTAAAGTCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGAGGCACCCTGCAAGAACGTGCAGCCAGGCTTTTCTTACTCAAAACCACACCTTTGGAAATGCTTCCAAAGAAGTTGCTTGCTAAGAAGTAATTTTGTGCTCGTCTGTTTTGCTATTGTAGCTGGTTGTAATTGTAACCTCATGTTCAGCTTATTCTCTGTTTTACTTGCTATGTAAATATGCGTGTGCATTTTTCAATATATTTCAACAACTTCCAAGGACGAACAGTAGTAATTCACTTTTTTAGAGTAATAAAAGGTGACTAATGTTCATTTGGTTCCG</gDNA_template>
            <first_frame> T  K  F  R  F  L  F  P  P  N  L  N  R  R  R  R  S  A  T  L  P  K  S  I  D  R  H  Q  S  T  D  N  G  D  D  *  R  I  S  D  S  S  S  S  R  Q  I  P  R  R  K  A  Q  S  L  K  F  H  Y  P  I  H  L  H  P  N  P  K  A  Q  N  T  E  P  N  F  N  S  F  S  P  S  A  F  T  A  F  Q  F  V  L  P  S  S  G  P  P  S  P  I  S  H  K  R  V  A  R  Q  P  K  Y  R  V  A  G  K  S  H  K  F  V  S  G  E  E  K  F  S  G  C  G  E  F  V  A  S  A  K  G  W  *  R  R  L  W  F  I  A  E  R  S  G  N  Q  G  R  A  E  E  D  E  *  F  *  R  V  *  G  Y  E  W  *  K  V  E  A  C  E  C  G  K  E  A  G  R  V  E  S  R  S  R  R  E  E  I  G  E  D  G  G  *  V  S  *  E  E  C  K  G  S  C  E  E  R  *  K  G  C  Y  W  K  *  H  G  *  V  C  A  E  V  *  G  G  F  C  *  V  Y  G  G  S  G  *  V  S  *  G  V  P  Q  G  I  R  V  I  *  K  E  G  G  *  A  Q  *  I  R  V  Q  K  A  Q  D  M  :  E  G  *  E  D  N  G  *  *  *  *  R  R  S  R  *  *  *  L  *  *  R  R  G  R  E  R  E  I  H  R  H  R  *  W  G  Q  F  R  L  Q  W  R  S  R  G  K  F  G  F  C  N  W  Q  K  S  *  W  W  C  I  *  E  W  L  R  G  R  K  G  Y  S  S  S  E  E  S  *  T  W  *  R  C  Q  C  K  C  S  S  P  *  K  *  K  S  V  L  T  H  S  R  Q  S  R  K  Y  W  A  E  C  C  C  L  *  C  W  H  *  Y  C  I  C  D  *  K  Y  S  N  R  K  R  S  F  W  C  F  *  A  N  C  C  G  G  E  L  W  C  E  R  K  Q  C  C  K  T  Q  *  *  S  K  P  Y  I  R  T  S  G  R  C  S  L  K  G  F  R  V  R  K  T  F  E  F  *  A  V  *  F  S  S  G  T  G   : G  T  R  H  G  E  V  K  V  R  T  S  S  A  W  V  E  V  W  R  H  P  A  R  T  C  S  Q  A  F  L  T  Q  N  H  T  F  G  N  A  S  K  E  V  A  C  *  E  V  I  L  C  S  S  V  L  L  L  *  L  V  V  I  V  T  S  C  S  A  Y  S  L  F  Y  L  L  C  K  Y  A  C  A  F  F  N  I  F  Q  Q  L  P  R  T  N  S  S  N  S  L  F  *  S  N  K  R  *  L  M  F  I  W  F   </first_frame>
            <second_frame>  P  N  L  D  F  S  F  P  Q  I  S  I  A  G  E  E  A  R  H  Y  Q  N  Q  S  T  G  I  N  Q  P  T  M  E  M  T  E  G  L  V  I  H  Q  V  L  V  K  F  L  D  G  K  H  K  A  L  N  F  T  T  P  S  I  S  T  L  T  L  K  H  K  I  Q  S  L  T  S  I  P  S  H  L  Q  L  L  L  P  F  N  S  F  Y  P  L  Q  D  H  Q  A  L  Y  L  T  N  G  L  P  D  N  R  N  I  G  S  P  E  N  L  T  N  L  S  P  E  K  R  N  F  P  V  V  V  N  L  L  L  R  L  R  G  G  K  G  G  F  G  S  L  L  R  G  A  A  T  K  A  G  Q  K  K  T  N  N  F  D  A  C  R  D  M  S  G  R  R  L  R  H  V  N  A  E  K  K  L  E  E  W  R  A  E  A  E  E  R  K  L  E  K  M  A  D  E  F  L  K  K  N  A  K  E  A  A  K  K  G  K  K  G  A  T  G  S  N  T  D  K  Y  V  Q  K  Y  R  E  D  S  A  K  C  M  E  E  V  D  R  S  V  R  E  S  L  K  G  F  V  S  S  K  R  K  G  V  E  L  N  E  S  E  S  K  K  L  K  I  W :   K  G  K  R  I  M  G  D  S  D  S  E  D  L  D  D  D  D  C  D  E  E  E  E  E  K  E  K  S  I  V  I  D  N  G  G  N  S  D  S  N  G  E  A  E  G  S  L  D  S  V  T  G  R  K  V  D  G  G  A  S  E  S  G  S  E  E  E  K  D  T  L  L  L  K  N  L  E  P  G  K  D  V  N  V  N  A  V  H  H  E  S  E  S  L  S  S  L  T  P  D  S  P  E  N  T  G  Q  S  A  V  A  S  S  V  G  T  D  I  A  S  V  I  E  S  I  Q  T  E  K  E  A  S  G  A  S  E  P  I  V  V  E  G  S  S  G  V  K  E  N  N  A  A  K  P  S  N  N  L  S  P  I  S  E  P  Q  E  D  A  V  S  K  D  S  E  L  E  K  P  L  N  F  E  Q  F  S  S  A  A  E  L  E  :  V  L  G  M  E  K  L  K  S  E  L  Q  V  R  G  L  K  C  G  G  T  L  Q  E  R  A  A  R  L  F  L  L  K  T  T  P  L  E  M  L  P  K  K  L  L  A  K  K  *  F  C  A  R  L  F  C  Y  C  S  W  L  *  L  *  P  H  V  Q  L  I  L  C  F  T  C  Y  V  N  M  R  V  H  F  S  I  Y  F  N  N  F  Q  G  R  T  V  V  I  H  F  F  R  V  I  K  G  D  *  C  S  F  G  S  </second_frame>
            <third_frame>   Q  I  *  I  S  L  S  P  K  S  Q  S  P  A  K  K  R  D  T  T  K  I  N  R  P  A  S  I  N  R  Q  W  R  *  L  K  D  *  *  F  I  K  F  S  S  N  S  S  T  E  S  T  K  P  *  I  S  L  P  H  P  S  P  P  *  P  *  S  T  K  Y  R  A  *  L  Q  F  L  L  T  F  S  F  Y  C  L  S  I  R  S  T  L  F  R  T  T  K  P  Y  I  S  Q  T  G  C  P  T  T  E  I  S  G  R  R  K  I  S  Q  I  C  L  R  R  R  E  I  F  R  L  W  *  I  C  C  F  G  *  G  V  V  K  E  A  L  V  H  C  *  E  E  R  Q  P  R  Q  G  R  R  R  R  I  I  L  T  R  V  G  I  *  V  V  E  G  *  G  M  *  M  R  K  R  S  W  K  S  G  E  Q  K  Q  K  R  G  N  W  R  R  W  R  M  S  F  L  R  R  M  Q  R  K  L  R  R  K  V  K  R  V  L  L  E  V  T  R  I  S  M  C  R  S  I  G  R  I  L  L  S  V  W  R  K  W  I  G  Q  L  G  S  P  S  R  D  S  C  H  L  K  G  R  G  L  S  S  M  N  Q  S  P  K  S  S  R  Y   : G  R  V  R  G  *  W  V  I  V  I  A  K  I  *  M  M  M  T  V  M  K  K  R  K  R  K  R  N  P  S  S  *  I  M  G  A  I  Q  T  P  M  E  K  Q  R  E  V  W  I  L  *  L  A  E  K  L  M  V  V  H  L  R  V  A  P  R  K  K  R  I  L  F  F  *  R  I  L  N  L  V  K  M  S  M  *  M  Q  F  T  M  K  V  K  V  C  P  H  S  L  Q  T  V  Q  K  I  L  G  R  V  L  L  P  L  V  L  A  L  I  L  H  L  *  L  K  V  F  K  Q  K  K  K  L  L  V  L  L  S  Q  L  L  W  R  G  A  L  V  *  K  K  T  M  L  Q  N  P  V  I  I  *  A  L  Y  Q  N  L  R  K  M  Q  S  Q  R  I  Q  S  *  K  N  L  *  I  L  S  S  L  V  Q  Q  R  N  W  R :   Y  S  A  W  R  S  *  S  Q  N  F  K  C  V  G  *  S  V  E  A  P  C  K  N  V  Q  P  G  F  S  Y  S  K  P  H  L  W  K  C  F  Q  R  S  C  L  L  R  S  N  F  V  L  V  C  F  A  I  V  A  G  C  N  C  N  L  M  F  S  L  F  S  V  L  L  A  M  *  I  C  V  C  I  F  Q  Y  I  S  T  T  S  K  D  E  Q  *  *  F  T  F  L  E  *  *  K  V  T  N  V  H  L  V  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98493" stop="99310"/>
                    <exon start="100382" stop="100958"/>
                    <exon start="102170" stop="102316"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1539</number_coding_nucleotides>
                  <number_encoded_amino_acids>513</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNLDFSFPQISIAGEEARHYQNQSTGINQPTMEMTEGLVIHQVLVKFLDGKHKALNFTTPSISTLTLKHKIQSLTSIPSHLQLLLPFNSFYPLQDHQALYLTNGLPDNRNIGSPENLTNLSPEKRNFPVVVNLLLRLRGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKKLEEWRAEAEERKLEKMADEFLKKNAKEAAKKGKKGATGSNTDKYVQKYREDSAKCMEEVDRSVRESLKGFVSSKRKGVELNESESKKLKIWKGKRIMGDSDSEDLDDDDCDEEEEEKEKSIVIDNGGNSDSNGEAEGSLDSVTGRKVDGGASESGSEEEKDTLLLKNLEPGKDVNVNAVHHESESLSSLTPDSPENTGQSAVASSVGTDIASVIESIQTEKEASGASEPIVVEGSSGVKENNAAKPSNNLSPISEPQEDAVSKDSELEKPLNFEQFSSAAELEVLGMEKLKSELQVRGLKCGGTLQERAARLFLLKTTPLEMLPKKLLAKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="98492" e_stop="99310"/>
            <exon e_start="100382" e_stop="100958"/>
            <exon e_start="102170" e_stop="102383"/>
            <exon e_start="102456" e_stop="102482"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.999"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.950"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.925"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="98492" e_stop="99310" e_length="819"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="99311" i_stop="100381" i_length="1071"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="100382" e_stop="100958" e_length="577"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="100959" i_stop="102169" i_length="1211"/>
          </intron>
          <exon e_serial="3" e_score="0.925">
            <gDNA_exon_boundary e_start="102170" e_stop="102383" e_length="214"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="102384" i_stop="102455" i_length="72"/>
          </intron>
          <exon e_serial="4" e_score="0.667">
            <gDNA_exon_boundary e_start="102456" e_stop="102482" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98492" stop="99052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98500" stop="98861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98513" stop="98950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98517" stop="99140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98518" stop="99040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98518" stop="98873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98522" stop="99123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98525" stop="99064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98529" stop="99064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98538" stop="99310"/>
              <exon start="100382" stop="100467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98542" stop="99078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98566" stop="98874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98592" stop="98888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98609" stop="99310"/>
              <exon start="100382" stop="100428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98884" stop="99310"/>
              <exon start="100382" stop="100435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98916" stop="99310"/>
              <exon start="100382" stop="100509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99054" stop="99310"/>
              <exon start="100382" stop="100554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99105" stop="99310"/>
              <exon start="100382" stop="100662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99243" stop="99310"/>
              <exon start="100382" stop="100958"/>
              <exon start="102170" stop="102383"/>
              <exon start="102456" stop="102482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616741" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99266" stop="99310"/>
              <exon start="100382" stop="100958"/>
              <exon start="102170" stop="102226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99286" stop="99310"/>
              <exon start="100382" stop="100871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100408" stop="100958"/>
              <exon start="102170" stop="102311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100408" stop="100958"/>
              <exon start="102170" stop="102311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCAAATTTAGATTTCTCTTTCCCCCAAATCTCAATCGCCGGCGAAGAAGCGCGACACTACCAAAATCAATCGACCGGCATCAATCAACCGACAATGGAGATGACTGAAGGATTAGTGATTCATCAAGTTCTCGTCAAATTCCTCGACGGAAAGCACAAAGCCTTAAATTTCACTACCCCATCCATCTCCACCCTAACCCTAAAGCACAAAATACAGAGCCTAACTTCAATTCCTTCTCACCTTCAGCTTTTACTGCCTTTCAATTCGTTCTACCCTCTTCAGGACCACCAAGCCCTATATCTCACAAACGGGTTGCCCGACAACCGAAATATCGGGTCGCCGGAAAATCTCACAAATTTGTCTCCGGAGAAGAGAAATTTTCCGGTTGTGGTGAATTTGTTGCTTCGGCTAAGGGGTGGTAAAGGAGGCTTTGGTTCATTGCTGAGAGGAGCGGCAACCAAGGCAGGGCAGAAGAAGACGAATAATTTTGACGCGTGTAGGGATATGAGTGGTAGAAGGTTGAGGCATGTGAATGCGGAAAAGAAGCTGGAAGAGTGGAGAGCAGAAGCAGAAGAGAGGAAATTGGAGAAGATGGCGGATGAGTTTCTTAAGAAGAATGCAAAGGAAGCTGCGAAGAAAGGTAAAAAGGGTGCTACTGGAAGTAACACGGATAAGTATGTGCAGAAGTATAGGGAGGATTCTGCTAAGTGTATGGAGGAAGTGGATAGGTCAGTTAGGGAGTCCCTCAAGGGATTCGTGTCATCTAAAAGGAAGGGGGTTGAGCTCAATGAATCAGAGTCCAAAAAGCTCAAGATATG : GAAGGGTAAGAGGATAATGGGTGATAGTGATAGCGAAGATCTAGATGATGATGACTGTGATGAAGAAGAGGAAGAGAAAGAGAAATCCATCGTCATAGATAATGGGGGCAATTCAGACTCCAATGGAGAAGCAGAGGGAAGTTTGGATTCTGTAACTGGCAGAAAAGTTGATGGTGGTGCATCTGAGAGTGGCTCCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAACCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAAGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGCTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGTGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTGCTTCTGAGCCAATTGTTGTGGAGGGGAGCTCTGGTGTGAAAGAAAACAATGCTGCAAAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGAGTTAGAAAAACCTTTGAATTTTGAGCAGTTTAGTTCAGCAGCGGAACTGGAG : GTACTCGGCATGGAGAAGTTAAAGTCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGAGGCACCCTGCAAGAACGTGCAGCCAGGCTTTTCTTACTCAAAACCACACCTTTGGAAATGCTTCCAAAGAAGTTGCTTGCTAAGAAGTAATTTTGTGCTCGTCTGTTTTGCTATTGTAGCTGGTTGTAATTGTAACCTCATGTTCAGCTTATTCTCT : TAATTCACTTTTTTAGAGTAATAAAAG</gDNA_template>
            <first_frame> T  K  F  R  F  L  F  P  P  N  L  N  R  R  R  R  S  A  T  L  P  K  S  I  D  R  H  Q  S  T  D  N  G  D  D  *  R  I  S  D  S  S  S  S  R  Q  I  P  R  R  K  A  Q  S  L  K  F  H  Y  P  I  H  L  H  P  N  P  K  A  Q  N  T  E  P  N  F  N  S  F  S  P  S  A  F  T  A  F  Q  F  V  L  P  S  S  G  P  P  S  P  I  S  H  K  R  V  A  R  Q  P  K  Y  R  V  A  G  K  S  H  K  F  V  S  G  E  E  K  F  S  G  C  G  E  F  V  A  S  A  K  G  W  *  R  R  L  W  F  I  A  E  R  S  G  N  Q  G  R  A  E  E  D  E  *  F  *  R  V  *  G  Y  E  W  *  K  V  E  A  C  E  C  G  K  E  A  G  R  V  E  S  R  S  R  R  E  E  I  G  E  D  G  G  *  V  S  *  E  E  C  K  G  S  C  E  E  R  *  K  G  C  Y  W  K  *  H  G  *  V  C  A  E  V  *  G  G  F  C  *  V  Y  G  G  S  G  *  V  S  *  G  V  P  Q  G  I  R  V  I  *  K  E  G  G  *  A  Q  *  I  R  V  Q  K  A  Q  D  M  :  E  G  *  E  D  N  G  *  *  *  *  R  R  S  R  *  *  *  L  *  *  R  R  G  R  E  R  E  I  H  R  H  R  *  W  G  Q  F  R  L  Q  W  R  S  R  G  K  F  G  F  C  N  W  Q  K  S  *  W  W  C  I  *  E  W  L  R  G  R  K  G  Y  S  S  S  E  E  S  *  T  W  *  R  C  Q  C  K  C  S  S  P  *  K  *  K  S  V  L  T  H  S  R  Q  S  R  K  Y  W  A  E  C  C  C  L  *  C  W  H  *  Y  C  I  C  D  *  K  Y  S  N  R  K  R  S  F  W  C  F  *  A  N  C  C  G  G  E  L  W  C  E  R  K  Q  C  C  K  T  Q  *  *  S  K  P  Y  I  R  T  S  G  R  C  S  L  K  G  F  R  V  R  K  T  F  E  F  *  A  V  *  F  S  S  G  T  G   : G  T  R  H  G  E  V  K  V  R  T  S  S  A  W  V  E  V  W  R  H  P  A  R  T  C  S  Q  A  F  L  T  Q  N  H  T  F  G  N  A  S  K  E  V  A  C  *  E  V  I  L  C  S  S  V  L  L  L  *  L  V  V  I  V  T  S  C  S  A  Y  S  L :   N  S  L  F  *  S  N  K   </first_frame>
            <second_frame>  P  N  L  D  F  S  F  P  Q  I  S  I  A  G  E  E  A  R  H  Y  Q  N  Q  S  T  G  I  N  Q  P  T  M  E  M  T  E  G  L  V  I  H  Q  V  L  V  K  F  L  D  G  K  H  K  A  L  N  F  T  T  P  S  I  S  T  L  T  L  K  H  K  I  Q  S  L  T  S  I  P  S  H  L  Q  L  L  L  P  F  N  S  F  Y  P  L  Q  D  H  Q  A  L  Y  L  T  N  G  L  P  D  N  R  N  I  G  S  P  E  N  L  T  N  L  S  P  E  K  R  N  F  P  V  V  V  N  L  L  L  R  L  R  G  G  K  G  G  F  G  S  L  L  R  G  A  A  T  K  A  G  Q  K  K  T  N  N  F  D  A  C  R  D  M  S  G  R  R  L  R  H  V  N  A  E  K  K  L  E  E  W  R  A  E  A  E  E  R  K  L  E  K  M  A  D  E  F  L  K  K  N  A  K  E  A  A  K  K  G  K  K  G  A  T  G  S  N  T  D  K  Y  V  Q  K  Y  R  E  D  S  A  K  C  M  E  E  V  D  R  S  V  R  E  S  L  K  G  F  V  S  S  K  R  K  G  V  E  L  N  E  S  E  S  K  K  L  K  I  W :   K  G  K  R  I  M  G  D  S  D  S  E  D  L  D  D  D  D  C  D  E  E  E  E  E  K  E  K  S  I  V  I  D  N  G  G  N  S  D  S  N  G  E  A  E  G  S  L  D  S  V  T  G  R  K  V  D  G  G  A  S  E  S  G  S  E  E  E  K  D  T  L  L  L  K  N  L  E  P  G  K  D  V  N  V  N  A  V  H  H  E  S  E  S  L  S  S  L  T  P  D  S  P  E  N  T  G  Q  S  A  V  A  S  S  V  G  T  D  I  A  S  V  I  E  S  I  Q  T  E  K  E  A  S  G  A  S  E  P  I  V  V  E  G  S  S  G  V  K  E  N  N  A  A  K  P  S  N  N  L  S  P  I  S  E  P  Q  E  D  A  V  S  K  D  S  E  L  E  K  P  L  N  F  E  Q  F  S  S  A  A  E  L  E  :  V  L  G  M  E  K  L  K  S  E  L  Q  V  R  G  L  K  C  G  G  T  L  Q  E  R  A  A  R  L  F  L  L  K  T  T  P  L  E  M  L  P  K  K  L  L  A  K  K  *  F  C  A  R  L  F  C  Y  C  S  W  L  *  L  *  P  H  V  Q  L  I  L   : L  I  H  F  F  R  V  I  K  </second_frame>
            <third_frame>   Q  I  *  I  S  L  S  P  K  S  Q  S  P  A  K  K  R  D  T  T  K  I  N  R  P  A  S  I  N  R  Q  W  R  *  L  K  D  *  *  F  I  K  F  S  S  N  S  S  T  E  S  T  K  P  *  I  S  L  P  H  P  S  P  P  *  P  *  S  T  K  Y  R  A  *  L  Q  F  L  L  T  F  S  F  Y  C  L  S  I  R  S  T  L  F  R  T  T  K  P  Y  I  S  Q  T  G  C  P  T  T  E  I  S  G  R  R  K  I  S  Q  I  C  L  R  R  R  E  I  F  R  L  W  *  I  C  C  F  G  *  G  V  V  K  E  A  L  V  H  C  *  E  E  R  Q  P  R  Q  G  R  R  R  R  I  I  L  T  R  V  G  I  *  V  V  E  G  *  G  M  *  M  R  K  R  S  W  K  S  G  E  Q  K  Q  K  R  G  N  W  R  R  W  R  M  S  F  L  R  R  M  Q  R  K  L  R  R  K  V  K  R  V  L  L  E  V  T  R  I  S  M  C  R  S  I  G  R  I  L  L  S  V  W  R  K  W  I  G  Q  L  G  S  P  S  R  D  S  C  H  L  K  G  R  G  L  S  S  M  N  Q  S  P  K  S  S  R  Y   : G  R  V  R  G  *  W  V  I  V  I  A  K  I  *  M  M  M  T  V  M  K  K  R  K  R  K  R  N  P  S  S  *  I  M  G  A  I  Q  T  P  M  E  K  Q  R  E  V  W  I  L  *  L  A  E  K  L  M  V  V  H  L  R  V  A  P  R  K  K  R  I  L  F  F  *  R  I  L  N  L  V  K  M  S  M  *  M  Q  F  T  M  K  V  K  V  C  P  H  S  L  Q  T  V  Q  K  I  L  G  R  V  L  L  P  L  V  L  A  L  I  L  H  L  *  L  K  V  F  K  Q  K  K  K  L  L  V  L  L  S  Q  L  L  W  R  G  A  L  V  *  K  K  T  M  L  Q  N  P  V  I  I  *  A  L  Y  Q  N  L  R  K  M  Q  S  Q  R  I  Q  S  *  K  N  L  *  I  L  S  S  L  V  Q  Q  R  N  W  R :   Y  S  A  W  R  S  *  S  Q  N  F  K  C  V  G  *  S  V  E  A  P  C  K  N  V  Q  P  G  F  S  Y  S  K  P  H  L  W  K  C  F  Q  R  S  C  L  L  R  S  N  F  V  L  V  C  F  A  I  V  A  G  C  N  C  N  L  M  F  S  L  F  S  :  *  F  T  F  L  E  *  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98493" stop="99310"/>
                    <exon start="100382" stop="100958"/>
                    <exon start="102170" stop="102316"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1539</number_coding_nucleotides>
                  <number_encoded_amino_acids>513</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNLDFSFPQISIAGEEARHYQNQSTGINQPTMEMTEGLVIHQVLVKFLDGKHKALNFTTPSISTLTLKHKIQSLTSIPSHLQLLLPFNSFYPLQDHQALYLTNGLPDNRNIGSPENLTNLSPEKRNFPVVVNLLLRLRGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKKLEEWRAEAEERKLEKMADEFLKKNAKEAAKKGKKGATGSNTDKYVQKYREDSAKCMEEVDRSVRESLKGFVSSKRKGVELNESESKKLKIWKGKRIMGDSDSEDLDDDDCDEEEEEKEKSIVIDNGGNSDSNGEAEGSLDSVTGRKVDGGASESGSEEEKDTLLLKNLEPGKDVNVNAVHHESESLSSLTPDSPENTGQSAVASSVGTDIASVIESIQTEKEASGASEPIVVEGSSGVKENNAAKPSNNLSPISEPQEDAVSKDSELEKPLNFEQFSSAAELEVLGMEKLKSELQVRGLKCGGTLQERAARLFLLKTTPLEMLPKKLLAKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="99294" e_stop="99310"/>
            <exon e_start="100386" e_stop="100958"/>
            <exon e_start="102170" e_stop="102506"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.944"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99294" e_stop="99310" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.905">
            <gDNA_intron_boundary i_start="99311" i_stop="100385" i_length="1075"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="100386" e_stop="100958" e_length="573"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="100959" i_stop="102169" i_length="1211"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102170" e_stop="102506" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99294" stop="99310"/>
              <exon start="100386" stop="100872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100408" stop="100958"/>
              <exon start="102170" stop="102311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100408" stop="100958"/>
              <exon start="102170" stop="102311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100544" stop="100958"/>
              <exon start="102170" stop="102482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426403" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100565" stop="100958"/>
              <exon start="102170" stop="102482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576740" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100576" stop="100958"/>
              <exon start="102170" stop="102482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429657" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100664" stop="100958"/>
              <exon start="102170" stop="102459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100738" stop="100958"/>
              <exon start="102170" stop="102506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100797" stop="100958"/>
              <exon start="102170" stop="102506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAGCTCAAGATATG : GGTAAGAGGATAATGGGTGATAGTGATAGCGAAGATCTAGATGATGATGACTGTGATGAAGAAGAGGAAGAGAAAGAGAAATCCATCGTCATAGATAATGGGGGCAATTCAGACTCCAATGGAGAAGCAGAGGGAAGTTTGGATTCTGTAACTGGCAGAAAAGTTGATGGTGGTGCATCTGAGAGTGGCTCCGAGGAAGAAAAGGATACTCTTCTTCTGAAGAATCTTGAACCTGGTAAAGATGTCAATGTAAATGCAGTTCACCATGAAAGTGAAAGTCTGTCCTCACTCACTCCAGACAGTCCAGAAAATACTGGGCAGAGTGCTGTTGCCTCTAGTGTTGGCACTGATATTGCATCTGTGATTGAAAGTATTCAAACAGAAAAAGAAGCTTCTGGTGCTTCTGAGCCAATTGTTGTGGAGGGGAGCTCTGGTGTGAAAGAAAACAATGCTGCAAAACCCAGTAATAATCTAAGCCCTATATCAGAACCTCAGGAAGATGCAGTCTCAAAGGATTCAGAGTTAGAAAAACCTTTGAATTTTGAGCAGTTTAGTTCAGCAGCGGAACTGGAG : GTACTCGGCATGGAGAAGTTAAAGTCAGAACTTCAAGTGCGTGGGTTGAAGTGTGGAGGCACCCTGCAAGAACGTGCAGCCAGGCTTTTCTTACTCAAAACCACACCTTTGGAAATGCTTCCAAAGAAGTTGCTTGCTAAGAAGTAATTTTGTGCTCGTCTGTTTTGCTATTGTAGCTGGTTGTAATTGTAACCTCATGTTCAGCTTATTCTCTGTTTTACTTGCTATGTAAATATGCGTGTGCATTTTTCAATATATTTCAACAACTTCCAAGGACGAACAGTAGTAATTCACTTTTTTAGAGTAATAAAAGGTGACTAATGTTCATTTGGTTCCG</gDNA_template>
            <first_frame> K  K  L  K  I  W :   V  R  G  *  W  V  I  V  I  A  K  I  *  M  M  M  T  V  M  K  K  R  K  R  K  R  N  P  S  S  *  I  M  G  A  I  Q  T  P  M  E  K  Q  R  E  V  W  I  L  *  L  A  E  K  L  M  V  V  H  L  R  V  A  P  R  K  K  R  I  L  F  F  *  R  I  L  N  L  V  K  M  S  M  *  M  Q  F  T  M  K  V  K  V  C  P  H  S  L  Q  T  V  Q  K  I  L  G  R  V  L  L  P  L  V  L  A  L  I  L  H  L  *  L  K  V  F  K  Q  K  K  K  L  L  V  L  L  S  Q  L  L  W  R  G  A  L  V  *  K  K  T  M  L  Q  N  P  V  I  I  *  A  L  Y  Q  N  L  R  K  M  Q  S  Q  R  I  Q  S  *  K  N  L  *  I  L  S  S  L  V  Q  Q  R  N  W  R :   Y  S  A  W  R  S  *  S  Q  N  F  K  C  V  G  *  S  V  E  A  P  C  K  N  V  Q  P  G  F  S  Y  S  K  P  H  L  W  K  C  F  Q  R  S  C  L  L  R  S  N  F  V  L  V  C  F  A  I  V  A  G  C  N  C  N  L  M  F  S  L  F  S  V  L  L  A  M  *  I  C  V  C  I  F  Q  Y  I  S  T  T  S  K  D  E  Q  *  *  F  T  F  L  E  *  *  K  V  T  N  V  H  L  V  P </first_frame>
            <second_frame>  K  S  S  R  Y   : G  *  E  D  N  G  *  *  *  *  R  R  S  R  *  *  *  L  *  *  R  R  G  R  E  R  E  I  H  R  H  R  *  W  G  Q  F  R  L  Q  W  R  S  R  G  K  F  G  F  C  N  W  Q  K  S  *  W  W  C  I  *  E  W  L  R  G  R  K  G  Y  S  S  S  E  E  S  *  T  W  *  R  C  Q  C  K  C  S  S  P  *  K  *  K  S  V  L  T  H  S  R  Q  S  R  K  Y  W  A  E  C  C  C  L  *  C  W  H  *  Y  C  I  C  D  *  K  Y  S  N  R  K  R  S  F  W  C  F  *  A  N  C  C  G  G  E  L  W  C  E  R  K  Q  C  C  K  T  Q  *  *  S  K  P  Y  I  R  T  S  G  R  C  S  L  K  G  F  R  V  R  K  T  F  E  F  *  A  V  *  F  S  S  G  T  G   : G  T  R  H  G  E  V  K  V  R  T  S  S  A  W  V  E  V  W  R  H  P  A  R  T  C  S  Q  A  F  L  T  Q  N  H  T  F  G  N  A  S  K  E  V  A  C  *  E  V  I  L  C  S  S  V  L  L  L  *  L  V  V  I  V  T  S  C  S  A  Y  S  L  F  Y  L  L  C  K  Y  A  C  A  F  F  N  I  F  Q  Q  L  P  R  T  N  S  S  N  S  L  F  *  S  N  K  R  *  L  M  F  I  W  F   </second_frame>
            <third_frame>   K  A  Q  D  M  :  G  K  R  I  M  G  D  S  D  S  E  D  L  D  D  D  D  C  D  E  E  E  E  E  K  E  K  S  I  V  I  D  N  G  G  N  S  D  S  N  G  E  A  E  G  S  L  D  S  V  T  G  R  K  V  D  G  G  A  S  E  S  G  S  E  E  E  K  D  T  L  L  L  K  N  L  E  P  G  K  D  V  N  V  N  A  V  H  H  E  S  E  S  L  S  S  L  T  P  D  S  P  E  N  T  G  Q  S  A  V  A  S  S  V  G  T  D  I  A  S  V  I  E  S  I  Q  T  E  K  E  A  S  G  A  S  E  P  I  V  V  E  G  S  S  G  V  K  E  N  N  A  A  K  P  S  N  N  L  S  P  I  S  E  P  Q  E  D  A  V  S  K  D  S  E  L  E  K  P  L  N  F  E  Q  F  S  S  A  A  E  L  E  :  V  L  G  M  E  K  L  K  S  E  L  Q  V  R  G  L  K  C  G  G  T  L  Q  E  R  A  A  R  L  F  L  L  K  T  T  P  L  E  M  L  P  K  K  L  L  A  K  K  *  F  C  A  R  L  F  C  Y  C  S  W  L  *  L  *  P  H  V  Q  L  I  L  C  F  T  C  Y  V  N  M  R  V  H  F  S  I  Y  F  N  N  F  Q  G  R  T  V  V  I  H  F  F  R  V  I  K  G  D  *  C  S  F  G  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99296" stop="99310"/>
                    <exon start="100386" stop="100958"/>
                    <exon start="102170" stop="102316"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAQDMGKRIMGDSDSEDLDDDDCDEEEEEKEKSIVIDNGGNSDSNGEAEGSLDSVTGRKVDGGASESGSEEEKDTLLLKNLEPGKDVNVNAVHHESESLSSLTPDSPENTGQSAVASSVGTDIASVIESIQTEKEASGASEPIVVEGSSGVKENNAAKPSNNLSPISEPQEDAVSKDSELEKPLNFEQFSSAAELEVLGMEKLKSELQVRGLKCGGTLQERAARLFLLKTTPLEMLPKKLLAKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="103268" PGL_stop="103531"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103268" e_stop="103531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103268" e_stop="103531" e_length="264"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103268" stop="103531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTCTTCAACTTCTAAAGAATTTTTCTGCGGAACTATACATACAGCTTTCTGTATATATAGATTCGTGATTTCAAAAACCCTAAAAATGGTGCAGTTGTAGAGAGAGAAAATTGAGCTATAGCTTGGCGATGTTGGAGAGGTGGTGCGGAACTCGAGGTAAAGATTCCCGTCTTTGTAACTTTAACCCGGACTCGATTCTCAACATTGACTGTGCGAGAAATGCCTACGTCACCTGAAGAAAACCCTAACCCTAAGGTGAAAT</gDNA_template>
            <first_frame> L  S  S  T  S  K  E  F  F  C  G  T  I  H  T  A  F  C  I  Y  R  F  V  I  S  K  T  L  K  M  V  Q  L  *  R  E  K  I  E  L  *  L  G  D  V  G  E  V  V  R  N  S  R  *  R  F  P  S  L  *  L  *  P  G  L  D  S  Q  H  *  L  C  E  K  C  L  R  H  L  K  K  T  L  T  L  R  *  N </first_frame>
            <second_frame>  F  L  Q  L  L  K  N  F  S  A  E  L  Y  I  Q  L  S  V  Y  I  D  S  *  F  Q  K  P  *  K  W  C  S  C  R  E  R  K  L  S  Y  S  L  A  M  L  E  R  W  C  G  T  R  G  K  D  S  R  L  C  N  F  N  P  D  S  I  L  N  I  D  C  A  R  N  A  Y  V  T  *  R  K  P  *  P  *  G  E   </second_frame>
            <third_frame>   F  F  N  F  *  R  I  F  L  R  N  Y  T  Y  S  F  L  Y  I  *  I  R  D  F  K  N  P  K  N  G  A  V  V  E  R  E  N  *  A  I  A  W  R  C  W  R  G  G  A  E  L  E  V  K  I  P  V  F  V  T  L  T  R  T  R  F  S  T  L  T  V  R  E  M  P  T  S  P  E  E  N  P  N  P  K  V  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0108J06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="104127" PGL_stop="104471"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104127" e_stop="104471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104127" e_stop="104471" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104127" stop="104471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATAGTATTGATCAATGCGAGTGTAGAGGGGCTCGGTTATTTGGGTGAAAAGTGTGAAACTTTGCAGGAGTTGGAATTGCATTTCTCTGATGACTTTGCATTGAAGGGATTATTTGGCAGTAGGAATTTGCAGATACTGAAATTGGTTGGTTGTATTGATGGATTATATAATTCCATGGTTTCAGATATAGGGTTGACAATTTTAGCTCAAGGGTGTCCGCGTTTACTGAAGCTTGAGCTGGTAGGATGTGAGGGAAGTTATGATGGGATCAAAGCAATTGGGCAGTGCTGTCAGATGCTTGAGGAATTGATACTTTGTGATCATAGGATGGATGGTGGGTGGTT</gDNA_template>
            <first_frame> N  S  I  D  Q  C  E  C  R  G  A  R  L  F  G  *  K  V  *  N  F  A  G  V  G  I  A  F  L  *  *  L  C  I  E  G  I  I  W  Q  *  E  F  A  D  T  E  I  G  W  L  Y  *  W  I  I  *  F  H  G  F  R  Y  R  V  D  N  F  S  S  R  V  S  A  F  T  E  A  *  A  G  R  M  *  G  K  L  *  W  D  Q  S  N  W  A  V  L  S  D  A  *  G  I  D  T  L  *  S  *  D  G  W  W  V  V </first_frame>
            <second_frame>  I  V  L  I  N  A  S  V  E  G  L  G  Y  L  G  E  K  C  E  T  L  Q  E  L  E  L  H  F  S  D  D  F  A  L  K  G  L  F  G  S  R  N  L  Q  I  L  K  L  V  G  C  I  D  G  L  Y  N  S  M  V  S  D  I  G  L  T  I  L  A  Q  G  C  P  R  L  L  K  L  E  L  V  G  C  E  G  S  Y  D  G  I  K  A  I  G  Q  C  C  Q  M  L  E  E  L  I  L  C  D  H  R  M  D  G  G  W   </second_frame>
            <third_frame>   *  Y  *  S  M  R  V  *  R  G  S  V  I  W  V  K  S  V  K  L  C  R  S  W  N  C  I  S  L  M  T  L  H  *  R  D  Y  L  A  V  G  I  C  R  Y  *  N  W  L  V  V  L  M  D  Y  I  I  P  W  F  Q  I  *  G  *  Q  F  *  L  K  G  V  R  V  Y  *  S  L  S  W  *  D  V  R  E  V  M  M  G  S  K  Q  L  G  S  A  V  R  C  L  R  N  *  Y  F  V  I  I  G  W  M  V  G  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104128" stop="104469"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVLINASVEGLGYLGEKCETLQELELHFSDDFALKGLFGSRNLQILKLVGCIDGLYNSMVSDIGLTILAQGCPRLLKLELVGCEGSYDGIKAIGQCCQMLEELILCDHRMDGGW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="110321" PGL_stop="109637"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110321" e_stop="109637"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="110321" e_stop="109637" e_length="685"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110321" stop="109637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542796" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCCAACCATTCATATTAGTTTTCGTTTCTTCAACTCTAATAAAATGTTCATATTTGTTCTCAAGGTGTAATAGTGTTGTGGAAAAATCAAATAAGCCTACAAGATATATTAATTACCATTAACTTGCTCTATATGAAAAGTGGTCATGTTGTTTCTCAACCGTCTTGACTTAAGATTTAATCATTTCTATTTGTGGTGCAGGGAAGGAAAATGATATAACGTTTAACTAATTAATGATAATAGTTTAATTGAATACATTTTAGAGGTTTTTAGCTTCTTTGTAATTAATGCATTAAAATTCCTAGAGATATTAAAATTCATGATAATTAATTAATGCTGATACTTTATTGATGTGCATATTTATTACCTCTAAAACTATTTTTATTATTGTGTCATACTGAAATTAAGTCATGCTTTTAAACAATAAATTGCCGAAATTTTTGTCCTCTACTACAAAATGATGATATGCTTGCTGCTTGCATTTTTATTGTTAATTTTTGTTAGCTTGATACTTAATTTATAGCTAAAGAGGCAAAGCATTTTAATTATGCTTTGCACGTATGTTCTTCTTTCCCCACTTTCTCAGTCCATAAAAGGGCTATATGGACGCAATTATTATATGAAAAAGAAAAGTATATCTTATTTGAAGATACAAAGCTTACAAATCGTAATATAAAAAAGAA</gDNA_template>
            <first_frame> L  P  T  I  H  I  S  F  R  F  F  N  S  N  K  M  F  I  F  V  L  K  V  *  *  C  C  G  K  I  K  *  A  Y  K  I  Y  *  L  P  L  T  C  S  I  *  K  V  V  M  L  F  L  N  R  L  D  L  R  F  N  H  F  Y  L  W  C  R  E  G  K  *  Y  N  V  *  L  I  N  D  N  S  L  I  E  Y  I  L  E  V  F  S  F  F  V  I  N  A  L  K  F  L  E  I  L  K  F  M  I  I  N  *  C  *  Y  F  I  D  V  H  I  Y  Y  L  *  N  Y  F  Y  Y  C  V  I  L  K  L  S  H  A  F  K  Q  *  I  A  E  I  F  V  L  Y  Y  K  M  M  I  C  L  L  L  A  F  L  L  L  I  F  V  S  L  I  L  N  L  *  L  K  R  Q  S  I  L  I  M  L  C  T  Y  V  L  L  S  P  L  S  Q  S  I  K  G  L  Y  G  R  N  Y  Y  M  K  K  K  S  I  S  Y  L  K  I  Q  S  L  Q  I  V  I  *  K  R  </first_frame>
            <second_frame>  F  Q  P  F  I  L  V  F  V  S  S  T  L  I  K  C  S  Y  L  F  S  R  C  N  S  V  V  E  K  S  N  K  P  T  R  Y  I  N  Y  H  *  L  A  L  Y  E  K  W  S  C  C  F  S  T  V  L  T  *  D  L  I  I  S  I  C  G  A  G  K  E  N  D  I  T  F  N  *  L  M  I  I  V  *  L  N  T  F  *  R  F  L  A  S  L  *  L  M  H  *  N  S  *  R  Y  *  N  S  *  *  L  I  N  A  D  T  L  L  M  C  I  F  I  T  S  K  T  I  F  I  I  V  S  Y  *  N  *  V  M  L  L  N  N  K  L  P  K  F  L  S  S  T  T  K  *  *  Y  A  C  C  L  H  F  Y  C  *  F  L  L  A  *  Y  L  I  Y  S  *  R  G  K  A  F  *  L  C  F  A  R  M  F  F  F  P  H  F  L  S  P  *  K  G  Y  M  D  A  I  I  I  *  K  R  K  V  Y  L  I  *  R  Y  K  A  Y  K  S  *  Y  K  K  E </second_frame>
            <third_frame>   S  N  H  S  Y  *  F  S  F  L  Q  L  *  *  N  V  H  I  C  S  Q  G  V  I  V  L  W  K  N  Q  I  S  L  Q  D  I  L  I  T  I  N  L  L  Y  M  K  S  G  H  V  V  S  Q  P  S  *  L  K  I  *  S  F  L  F  V  V  Q  G  R  K  M  I  *  R  L  T  N  *  *  *  *  F  N  *  I  H  F  R  G  F  *  L  L  C  N  *  C  I  K  I  P  R  D  I  K  I  H  D  N  *  L  M  L  I  L  Y  *  C  A  Y  L  L  P  L  K  L  F  L  L  L  C  H  T  E  I  K  S  C  F  *  T  I  N  C  R  N  F  C  P  L  L  Q  N  D  D  M  L  A  A  C  I  F  I  V  N  F  C  *  L  D  T  *  F  I  A  K  E  A  K  H  F  N  Y  A  L  H  V  C  S  S  F  P  T  F  S  V  H  K  R  A  I  W  T  Q  L  L  Y  E  K  E  K  Y  I  L  F  E  D  T  K  L  T  N  R  N  I  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0108J06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="111435" PGL_stop="110744"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111435" e_stop="110744"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111435" e_stop="110744" e_length="692"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111435" stop="110744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111430" stop="110985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301394" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCAGGCATTCACCGCCAATATCCAGAAAATGGCGGTGAATCAGCCGCGGAAGCAGGGGCTAGCCGTGTGGTTGGTCTTGATGAGTCTACGATTCAATCGTACAGAAAAATTGTTGTCGATAAAAACGAATCGAGTTGCCCGATATGCCTGGCGGAGTACAATGCTGGAGAGATAGCAAAGTGTATGCCGGGGTGTCAACATTGCTTCCATATTGATTGTGTTGATAAGTGGTTGAAGTTGAATACTACTTGTCCTCTTTGTAGAAAGTGTCTCCTTTTCTCTAAATTGCCTAATTTGTAGCTTCATGTCTATAAAGATTTCCTTTTGCTCCAATATCATGTCCACCTATTGTCTTTTATTTTTTCAGGTGGAAGGAATCGAACTCTCACGAACAAATTGGAAGTTCATATAACTAACCAACTGAGTTGCTATGATTTCTCATGTCCATATATTGTCATAATTTGACTTGTAAACAAATTTGGATTGGATCGGTGAAATTTGAAAGCTTTTTTATCCTCTCACAAATTGATTATAATCTCTTTGCTTCGAAAAGAATGATCTTCTTTCCTTTTTAGTCTGTTTTAAAAAAATATAACCTCTTTCTTTTTTTGGTAACATTTTAATTTCAGCTTTTCACGTGACATATTTAAGGGCACTAGATCAAAGAGCAATTTTGTACATTTAATCTAAC</gDNA_template>
            <first_frame> R  R  H  S  P  P  I  S  R  K  W  R  *  I  S  R  G  S  R  G  *  P  C  G  W  S  *  *  V  Y  D  S  I  V  Q  K  N  C  C  R  *  K  R  I  E  L  P  D  M  P  G  G  V  Q  C  W  R  D  S  K  V  Y  A  G  V  S  T  L  L  P  Y  *  L  C  *  *  V  V  E  V  E  Y  Y  L  S  S  L  *  K  V  S  P  F  L  *  I  A  *  F  V  A  S  C  L  *  R  F  P  F  A  P  I  S  C  P  P  I  V  F  Y  F  F  R  W  K  E  S  N  S  H  E  Q  I  G  S  S  Y  N  *  P  T  E  L  L  *  F  L  M  S  I  Y  C  H  N  L  T  C  K  Q  I  W  I  G  S  V  K  F  E  S  F  F  I  L  S  Q  I  D  Y  N  L  F  A  S  K  R  M  I  F  F  P  F  *  S  V  L  K  K  Y  N  L  F  L  F  L  V  T  F  *  F  Q  L  F  T  *  H  I  *  G  H  *  I  K  E  Q  F  C  T  F  N  L   </first_frame>
            <second_frame>  A  G  I  H  R  Q  Y  P  E  N  G  G  E  S  A  A  E  A  G  A  S  R  V  V  G  L  D  E  S  T  I  Q  S  Y  R  K  I  V  V  D  K  N  E  S  S  C  P  I  C  L  A  E  Y  N  A  G  E  I  A  K  C  M  P  G  C  Q  H  C  F  H  I  D  C  V  D  K  W  L  K  L  N  T  T  C  P  L  C  R  K  C  L  L  F  S  K  L  P  N  L  *  L  H  V  Y  K  D  F  L  L  L  Q  Y  H  V  H  L  L  S  F  I  F  S  G  G  R  N  R  T  L  T  N  K  L  E  V  H  I  T  N  Q  L  S  C  Y  D  F  S  C  P  Y  I  V  I  I  *  L  V  N  K  F  G  L  D  R  *  N  L  K  A  F  L  S  S  H  K  L  I  I  I  S  L  L  R  K  E  *  S  S  F  L  F  S  L  F  *  K  N  I  T  S  F  F  F  W  *  H  F  N  F  S  F  S  R  D  I  F  K  G  T  R  S  K  S  N  F  V  H  L  I  *  </second_frame>
            <third_frame>   Q  A  F  T  A  N  I  Q  K  M  A  V  N  Q  P  R  K  Q  G  L  A  V  W  L  V  L  M  S  L  R  F  N  R  T  E  K  L  L  S  I  K  T  N  R  V  A  R  Y  A  W  R  S  T  M  L  E  R  *  Q  S  V  C  R  G  V  N  I  A  S  I  L  I  V  L  I  S  G  *  S  *  I  L  L  V  L  F  V  E  S  V  S  F  S  L  N  C  L  I  C  S  F  M  S  I  K  I  S  F  C  S  N  I  M  S  T  Y  C  L  L  F  F  Q  V  E  G  I  E  L  S  R  T  N  W  K  F  I  *  L  T  N  *  V  A  M  I  S  H  V  H  I  L  S  *  F  D  L  *  T  N  L  D  W  I  G  E  I  *  K  L  F  Y  P  L  T  N  *  L  *  S  L  C  F  E  K  N  D  L  L  S  F  L  V  C  F  K  K  I  *  P  L  S  F  F  G  N  I  L  I  S  A  F  H  V  T  Y  L  R  A  L  D  Q  R  A  I  L  Y  I  *  S  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111434" stop="111135"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGIHRQYPENGGESAAEAGASRVVGLDESTIQSYRKIVVDKNESSCPICLAEYNAGEIAKCMPGCQHCFHIDCVDKWLKLNTTCPLCRKCLLFSKLPNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="118811" PGL_stop="117139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118811" e_stop="118197"/>
            <exon e_start="117697" e_stop="117139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="118811" e_stop="118197" e_length="615"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.943">
            <gDNA_intron_boundary i_start="118196" i_stop="117698" i_length="499"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="117697" e_stop="117139" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118811" stop="118210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118650" stop="118197"/>
              <exon start="117697" stop="117337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118650" stop="118197"/>
              <exon start="117697" stop="117346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118649" stop="118197"/>
              <exon start="117697" stop="117612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118568" stop="118294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118449" stop="118197"/>
              <exon start="117697" stop="117139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118426" stop="118197"/>
              <exon start="117697" stop="117139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544464" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAATTGCCCCCTGGATTCCATTTGTGGAAATAATCGTTTTGACATACGATTTCCTTTTGGATTAGAAGAGCCTTGTACATATAATCCTAGTTTCAATATTAAATGCAATAATCAAGGCAGAGCAATTTTAAGTCTTCCTGGTGCAGGGGATTTCTATGTACGCGATATCAACTACCTCATGCAAGAAATTCAACTCTACGATCAATTTGATTGTCTTCCTAAACGGCTTACTAATTTTCAACTTCCTTCTTCTTCTGTCCTCAAGCCAGTTTACTATCGAAACTACACTTTCTTGATTTGTTCGACAGATTTGGTCATGTCTTTCAATGTCATTAGTTGTATGAGTAATTCCACTATCTCTACTTTGGCTACTTCTTCAACGAACCTTGCTAGCCAAATGGTATCTTTGTATAATTGTAAAGTAGATAACACTTTATCTATTCCTGTCTCGTGGACTCCTTTGTATGAGGCAGTTTTTTCAAGTGACCTTAATAATGATCTTGTTTTAACATGGGATGAACCGAATTGCCAAGAATGCGAAGTAGAAGGACAACTTTGTGGGTTCAAGAATGTAACTAGTGGAGAAATTCAATGCTTTGATGTTGCTGGGACAG : GCAATACAAAAGGTATACAAATATTCCGAATAGTTGCACTAGCCTTAGTGATACCAGCCATCACATGTTCATTGGGTGTGACATGTTACATTTGCTATGAGCAAAGCCGAGACAGCCGCCGCTCCGCTGCTCTCCAGAACACTACTGCCGGTGGAGCAGCCGTAGTACCACAACCGGAAACGTCAATTGGGCTGGACGATTCGACGATCGAATCGTACACAAAAGTTGTTCTAGGTGAAAGTAGGAGAATTCCAGGGCCAAATCATGGAATTTGTCCAATATGTTTGGCTGAGTATCATCCAAAAGAGACAGTGAGATGCATACCTGAATGTGAACATGGTTTTCATGCTGAATGCATTGATGAATGGTTAAAGATTAATGGGACTTGTCCTGTTTGTAGAAATAATCCTTCTCCTGTTCATGTTAACTTTTCATAACACATTTTTTTCCCTCACATGTGATATGAGAGTTTTGTCTGTATATGATATCTATTGGAACTAATATTGTATCTCTCAATCCAAACTTGTATATAAGGTTTGATAACATCATTTTCGTAAGA</gDNA_template>
            <first_frame> V  I  A  P  W  I  P  F  V  E  I  I  V  L  T  Y  D  F  L  L  D  *  K  S  L  V  H  I  I  L  V  S  I  L  N  A  I  I  K  A  E  Q  F  *  V  F  L  V  Q  G  I  S  M  Y  A  I  S  T  T  S  C  K  K  F  N  S  T  I  N  L  I  V  F  L  N  G  L  L  I  F  N  F  L  L  L  L  S  S  S  Q  F  T  I  E  T  T  L  S  *  F  V  R  Q  I  W  S  C  L  S  M  S  L  V  V  *  V  I  P  L  S  L  L  W  L  L  L  Q  R  T  L  L  A  K  W  Y  L  C  I  I  V  K  *  I  T  L  Y  L  F  L  S  R  G  L  L  C  M  R  Q  F  F  Q  V  T  L  I  M  I  L  F  *  H  G  M  N  R  I  A  K  N  A  K  *  K  D  N  F  V  G  S  R  M  *  L  V  E  K  F  N  A  L  M  L  L  G  Q  :  A  I  Q  K  V  Y  K  Y  S  E  *  L  H  *  P  *  *  Y  Q  P  S  H  V  H  W  V  *  H  V  T  F  A  M  S  K  A  E  T  A  A  A  P  L  L  S  R  T  L  L  P  V  E  Q  P  *  Y  H  N  R  K  R  Q  L  G  W  T  I  R  R  S  N  R  T  Q  K  L  F  *  V  K  V  G  E  F  Q  G  Q  I  M  E  F  V  Q  Y  V  W  L  S  I  I  Q  K  R  Q  *  D  A  Y  L  N  V  N  M  V  F  M  L  N  A  L  M  N  G  *  R  L  M  G  L  V  L  F  V  E  I  I  L  L  L  F  M  L  T  F  H  N  T  F  F  S  L  T  C  D  M  R  V  L  S  V  Y  D  I  Y  W  N  *  Y  C  I  S  Q  S  K  L  V  Y  K  V  *  *  H  H  F  R  K  </first_frame>
            <second_frame>  *  L  P  P  G  F  H  L  W  K  *  S  F  *  H  T  I  S  F  W  I  R  R  A  L  Y  I  *  S  *  F  Q  Y  *  M  Q  *  S  R  Q  S  N  F  K  S  S  W  C  R  G  F  L  C  T  R  Y  Q  L  P  H  A  R  N  S  T  L  R  S  I  *  L  S  S  *  T  A  Y  *  F  S  T  S  F  F  F  C  P  Q  A  S  L  L  S  K  L  H  F  L  D  L  F  D  R  F  G  H  V  F  Q  C  H  *  L  Y  E  *  F  H  Y  L  Y  F  G  Y  F  F  N  E  P  C  *  P  N  G  I  F  V  *  L  *  S  R  *  H  F  I  Y  S  C  L  V  D  S  F  V  *  G  S  F  F  K  *  P  *  *  *  S  C  F  N  M  G  *  T  E  L  P  R  M  R  S  R  R  T  T  L  W  V  Q  E  C  N  *  W  R  N  S  M  L  *  C  C  W  D  R :   Q  Y  K  R  Y  T  N  I  P  N  S  C  T  S  L  S  D  T  S  H  H  M  F  I  G  C  D  M  L  H  L  L  *  A  K  P  R  Q  P  P  L  R  C  S  P  E  H  Y  C  R  W  S  S  R  S  T  T  T  G  N  V  N  W  A  G  R  F  D  D  R  I  V  H  K  S  C  S  R  *  K  *  E  N  S  R  A  K  S  W  N  L  S  N  M  F  G  *  V  S  S  K  R  D  S  E  M  H  T  *  M  *  T  W  F  S  C  *  M  H  *  *  M  V  K  D  *  W  D  L  S  C  L  *  K  *  S  F  S  C  S  C  *  L  F  I  T  H  F  F  P  S  H  V  I  *  E  F  C  L  Y  M  I  S  I  G  T  N  I  V  S  L  N  P  N  L  Y  I  R  F  D  N  I  I  F  V  R </second_frame>
            <third_frame>   N  C  P  L  D  S  I  C  G  N  N  R  F  D  I  R  F  P  F  G  L  E  E  P  C  T  Y  N  P  S  F  N  I  K  C  N  N  Q  G  R  A  I  L  S  L  P  G  A  G  D  F  Y  V  R  D  I  N  Y  L  M  Q  E  I  Q  L  Y  D  Q  F  D  C  L  P  K  R  L  T  N  F  Q  L  P  S  S  S  V  L  K  P  V  Y  Y  R  N  Y  T  F  L  I  C  S  T  D  L  V  M  S  F  N  V  I  S  C  M  S  N  S  T  I  S  T  L  A  T  S  S  T  N  L  A  S  Q  M  V  S  L  Y  N  C  K  V  D  N  T  L  S  I  P  V  S  W  T  P  L  Y  E  A  V  F  S  S  D  L  N  N  D  L  V  L  T  W  D  E  P  N  C  Q  E  C  E  V  E  G  Q  L  C  G  F  K  N  V  T  S  G  E  I  Q  C  F  D  V  A  G  T   : G  N  T  K  G  I  Q  I  F  R  I  V  A  L  A  L  V  I  P  A  I  T  C  S  L  G  V  T  C  Y  I  C  Y  E  Q  S  R  D  S  R  R  S  A  A  L  Q  N  T  T  A  G  G  A  A  V  V  P  Q  P  E  T  S  I  G  L  D  D  S  T  I  E  S  Y  T  K  V  V  L  G  E  S  R  R  I  P  G  P  N  H  G  I  C  P  I  C  L  A  E  Y  H  P  K  E  T  V  R  C  I  P  E  C  E  H  G  F  H  A  E  C  I  D  E  W  L  K  I  N  G  T  C  P  V  C  R  N  N  P  S  P  V  H  V  N  F  S  *  H  I  F  F  P  H  M  *  Y  E  S  F  V  C  I  *  Y  L  L  E  L  I  L  Y  L  S  I  Q  T  C  I  *  G  L  I  T  S  F  S  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0108J06.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118809" stop="118197"/>
                    <exon start="117697" stop="117261"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1047</number_coding_nucleotides>
                  <number_encoded_amino_acids>349</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NCPLDSICGNNRFDIRFPFGLEEPCTYNPSFNIKCNNQGRAILSLPGAGDFYVRDINYLMQEIQLYDQFDCLPKRLTNFQLPSSSVLKPVYYRNYTFLICSTDLVMSFNVISCMSNSTISTLATSSTNLASQMVSLYNCKVDNTLSIPVSWTPLYEAVFSSDLNNDLVLTWDEPNCQECEVEGQLCGFKNVTSGEIQCFDVAGTGNTKGIQIFRIVALALVIPAITCSLGVTCYICYEQSRDSRRSAALQNTTAGGAAVVPQPETSIGLDDSTIESYTKVVLGESRRIPGPNHGICPICLAEYHPKETVRCIPECEHGFHAECIDEWLKINGTCPVCRNNPSPVHVNFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 162 chains have been computed
$ 
$ memory statistics:
$ 576192 bytes spliced alignments in total
$ 116 spliced alignments have been stored
$ 4967 bytes was the average size of a spliced alignment
$ 31880 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 1518 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 187 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 07:11:33
-->
