<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:14:34"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E225774" ref_strand="+" ref_description="SGN-E225774 [cLEL-17-L23](-)">
      <seq>ggtgagaggtatgcaaacaggggtcaaacatggaggggcaaatttccatcaagagacaggtaccatggcaatagtgatcacagggggagagacagattcagttcaaggcaaggacctaatccaagtaaggtggttgaaaagtggaaacacgatctttatgatgaggcaaacaagaatccaactccgaaaaatgaagaagatcaaatagcaaaaatcgaagcactattgtcttcataggtcttgcagttaagtgaagtggtagttcctgtttctttgtttgtcgaaaaaggtaagggggggttattactgatgatcgaagtattgctgtacaatcctctcaattttgattttaggcaatgctattttgtatctgttgtttggaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="737" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="437" g_stop="57" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="382" polyA_stop="401"/>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E225774" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="437" e_stop="57"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAGAGGTATGCAAACAGGGGTCAAACATGGAGGGGCAAATTTCCATCAAGAGACAGGTACCATGGCAATAGTGATCACAGGGGGAGAGACAGATTCAGTTCAAGGCAAGGACCTAATCCAAGTAAGGTGGTTGAAAAGTGGAAACACGATCTTTATGATGAGGCAAACAAGAATCCAACTCCGAAAAATGAAGAAGATCAAATAGCAAAAATCGAAGCACTATTGTCTTCATAGGTCTTGCAGTTAAGTGAAGTGGTAGTTCCTGTTTCTTTGTTTGTCGAAAAAGGTAAGGGGGGGTTATTACTGATGATCGAAGTATTGCTGTACAATCCTCTCAATTTTGATTTTAGGCAATGCTATTTTGTATCTGTTGTTTGG</genome_strand>
        <mrna_strand>GGTGAGAGGTATGCAAACAGGGGTCAAACATGGAGGGGCAAATTTCCATCAAGAGACAGGTACCATGGCAATAGTGATCACAGGGGGAGAGACAGATTCAGTTCAAGGCAAGGACCTAATCCAAGTAAGGTGGTTGAAAAGTGGAAACACGATCTTTATGATGAGGCAAACAAGAATCCAACTCCGAAAAATGAAGAAGATCAAATAGCAAAAATCGAAGCACTATTGTCTTCATAGGTCTTGCAGTTAAGTGAAGTGGTAGTTCCTGTTTCTTTGTTTGTCGAAAAAGGTAAGGGGGGGTTATTACTGATGATCGAAGTATTGCTGTACAATCCTCTCAATTTTGATTTTAGGCAATGCTATTTTGTATCTGTTGTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377260" ref_strand="+" ref_description="SGN-E377260 [TUS-19-D14]">
      <seq>gcgaaagagacancgaacagagccacaacaaagganaagcagaggaaggacgagaagagcaaagacacaggcaggcaaaacgaaggncggcgccaagacaggnactttgaagtaaaggaaaatcctaaaccacctgtgaagaaaaggtcatttagggaggaaaagattccagtggatactgaaaaacttgagaaagctgtgacggagcttgttaagcctaatccttctcaccctgaagtagatggcggaagaaagaatgaaagaactgaccacatgtcacgccatcctagtagatatgagagaccatttactggtgagaggtatgcaaacaggggtcaaacatggaggggcaaatttccatcaagagacaggtaccatggcaatagtgatcacagggggagagacagattcagttcaaggcaaggacctaatccaagtaaggtggttgaaaagtggaaacacgatctttatgatgaggcaaacaagaatccaactccgaaaaatgaagaagatcaaatagcaaaaatcgaagcactattgtcttcataggtcttgcagttaagtgaagtggtagttcctgtttctttgtttgtcgaaaaaggtaagggggggttattactgatgatcgaagtattgctgtacaatcctctcatttttgattttaggcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="1049" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="749" g_stop="80" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E377260" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="749" e_stop="80"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAAGAGACATCGAACAGAGCCACAACAAATGATAAGCAGATGAATGACGAGAAGAGCAAAGTTTCAGGCAGGCAAAATGATGTTTGGCGCCATGACAGGTACTTTGAAGTAAAGGAAAATCCTAAACCACCTGTGAAGAAAAGGTCATTTAGGGAGGAAAAGATTCCAGTGGATACTGAAAAACTTGAGAAAGCTGTGACGGAGCTTGTTAAGCCTAATCCTTCTCACCCTGAAGTAGATGGCGGAAGAAAGAATGAAAGAACTGACCACATGTCACGCCATCCTAGTAGATATGAGAGACCATTTACTGGTGAGAGGTATGCAAACAGGGGTCAAACATGGAGGGGCAAATTTCCATCAAGAGACAGGTACCATGGCAATAGTGATCACAGGGGGAGAGACAGATTCAGTTCAAGGCAAGGACCTAATCCAAGTAAGGTGGTTGAAAAGTGGAAACACGATCTTTATGATGAGGCAAACAAGAATCCAACTCCGAAAAATGAAGAAGATCAAATAGCAAAAATCGAAGCACTATTGTCTTCATAGGTCTTGCAGTTAAGTGAAGTGGTAGTTCCTGTTTCTTTGTTTGTCGAAAAAGGTAAGGGGGGGTTATTACTGATGATCGAAGTATTGCTGTACAATCCTCTCAATTTTGATTTTAGGCAAT</genome_strand>
        <mrna_strand>GCGAAAGAGACANCGAACAGAGCCACAACAAAGGANAAGCAGAGGAAGGACGAGAAGAGCAAAGACACAGGCAGGCAAAACGAAGGNCGGCGCCAAGACAGGNACTTTGAAGTAAAGGAAAATCCTAAACCACCTGTGAAGAAAAGGTCATTTAGGGAGGAAAAGATTCCAGTGGATACTGAAAAACTTGAGAAAGCTGTGACGGAGCTTGTTAAGCCTAATCCTTCTCACCCTGAAGTAGATGGCGGAAGAAAGAATGAAAGAACTGACCACATGTCACGCCATCCTAGTAGATATGAGAGACCATTTACTGGTGAGAGGTATGCAAACAGGGGTCAAACATGGAGGGGCAAATTTCCATCAAGAGACAGGTACCATGGCAATAGTGATCACAGGGGGAGAGACAGATTCAGTTCAAGGCAAGGACCTAATCCAAGTAAGGTGGTTGAAAAGTGGAAACACGATCTTTATGATGAGGCAAACAAGAATCCAACTCCGAAAAATGAAGAAGATCAAATAGCAAAAATCGAAGCACTATTGTCTTCATAGGTCTTGCAGTTAAGTGAAGTGGTAGTTCCTGTTTCTTTGTTTGTCGAAAAAGGTAAGGGGGGGTTATTACTGATGATCGAAGTATTGCTGTACAATCCTCTCATTTTTGATTTTAGGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293853" ref_strand="+" ref_description="SGN-E293853 [cLET-37-K14]">
      <seq>gaaacacgatctttatgatgaggcaaacaagaatccaactccgaaaaatgaagaagatcaaatagcaaaaatcgaagcactattgtcttcataggtcttgcagttaagtgaagtggtagttcctgtttctttgtttgtcgaaaaaggtaagggggggttattactgatgatcgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="594" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="294" g_stop="119" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E293853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="294" e_stop="119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACACGATCTTTATGATGAGGCAAACAAGAATCCAACTCCGAAAAATGAAGAAGATCAAATAGCAAAAATCGAAGCACTATTGTCTTCATAGGTCTTGCAGTTAAGTGAAGTGGTAGTTCCTGTTTCTTTGTTTGTCGAAAAAGGTAAGGGGGGGTTATTACTGATGATCGAAG</genome_strand>
        <mrna_strand>GAAACACGATCTTTATGATGAGGCAAACAAGAATCCAACTCCGAAAAATGAAGAAGATCAAATAGCAAAAATCGAAGCACTATTGTCTTCATAGGTCTTGCAGTTAAGTGAAGTGGTAGTTCCTGTTTCTTTGTTTGTCGAAAAAGGTAAGGGGGGGTTATTACTGATGATCGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231265" ref_strand="+" ref_description="SGN-E231265 [cLED-5-B10]">
      <seq>gatgcgaaagagacatcgaacagagccacaacaaatgataagcagatgaatgacgagaagagcaaagtttcaggcaggcaaaatgatgtttggcgccatgacaggtactttgaagtaaaggaaaatcctaaaccacctgtgaagaaaaggtcatttagggaggaaaagattccagtggatactgaaaaacttgagaaagctgtgacggagcttgttaagcctaatccttctcaccctgaagtagatggcggaagaaagaatgaaagaactgaccacatgtcacgccatcctagtagatatgagagaccatttactggtgagaggtatgcaaacaggggtcaaacatggaggggcaaatttccatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="1052" stop="86"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="752" g_stop="386" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E231265" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="752" e_stop="386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCGAAAGAGACATCGAACAGAGCCACAACAAATGATAAGCAGATGAATGACGAGAAGAGCAAAGTTTCAGGCAGGCAAAATGATGTTTGGCGCCATGACAGGTACTTTGAAGTAAAGGAAAATCCTAAACCACCTGTGAAGAAAAGGTCATTTAGGGAGGAAAAGATTCCAGTGGATACTGAAAAACTTGAGAAAGCTGTGACGGAGCTTGTTAAGCCTAATCCTTCTCACCCTGAAGTAGATGGCGGAAGAAAGAATGAAAGAACTGACCACATGTCACGCCATCCTAGTAGATATGAGAGACCATTTACTGGTGAGAGGTATGCAAACAGGGGTCAAACATGGAGGGGCAAATTTCCATCAA</genome_strand>
        <mrna_strand>GATGCGAAAGAGACATCGAACAGAGCCACAACAAATGATAAGCAGATGAATGACGAGAAGAGCAAAGTTTCAGGCAGGCAAAATGATGTTTGGCGCCATGACAGGTACTTTGAAGTAAAGGAAAATCCTAAACCACCTGTGAAGAAAAGGTCATTTAGGGAGGAAAAGATTCCAGTGGATACTGAAAAACTTGAGAAAGCTGTGACGGAGCTTGTTAAGCCTAATCCTTCTCACCCTGAAGTAGATGGCGGAAGAAAGAATGAAAGAACTGACCACATGTCACGCCATCCTAGTAGATATGAGAGACCATTTACTGGTGAGAGGTATGCAAACAGGGGTCAAACATGGAGGGGCAAATTTCCATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329752" ref_strand="+" ref_description="SGN-E329752 [cTOD-3-K13]">
      <seq>tcgtctcgtcgagagggtcgcgattccgactcgaaacgtcaccgttcccggttcgatcaagaacccagtccaaagagatcaaggagacaaagtagacaagaaactgagagaccacctaccacacacaatttagatagtgaaaacaattcagaacgggatttaaaacaccatcgccgtctgcaagatgatgtgcctcttgatgctccgtcagtgcaagattcgaagtcagaaagaactccaaggaaaccatctgagaatgtagcagttaaagatgatgggatcaaagagtcttctgatctcaatgaaggttctcgccatcgatcatccaaacactctacaaatccatcacacgatgagcgtggtagtgctgggcaagttgatagaagcttcaggcataaggcagcaactgagcgaggatggtggaaagatgcgaaagagacatcgaacagagccacaacaaatgataagcagatgaatgacgagaagagcaaagtttcaggcaggcaaaatgatgtttggcgccatgacaggtactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="3119" stop="343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2819" g_stop="2752" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2751" i_stop="2181" i_length="571">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2180" g_stop="1901" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="348" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1900" i_stop="1377" i_length="524">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1376" g_stop="1316" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="409" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1315" i_stop="770" i_length="546">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="769" g_stop="643" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="536" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E329752" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2819" e_stop="2752"/>
          <exon e_start="2180" e_stop="1901"/>
          <exon e_start="1376" e_stop="1316"/>
          <exon e_start="769" e_stop="643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCTCGTCGAGAGGGTCGCGATTCCGACTCGAAACGTCACCGTTCCCGGTTCGATCAAGAACCCAGGTAATCGATTATATTTTCTTGAAATAATTGGGAATTTTTTAATAGCTTTCGAATGATTTAGGGTTCGATTAAAATTCATTATTTGAAGAGCCGAGGAAAAAGGAACAGTTGGCGGGACTTTGTAATCTTGAACTTTTAGGATTTCTCGGGTCTGTGAAGTTTTTCTGTTTTTCTTTTCTGTATCGGCGTTAAAATGAAAATTGGTTACGTGAATTTGGGGTTTCTGTAGGACTGAATTTATACGAGTACTGCTGAGAGGAGGAAAAATAGTGGGGTGAGAATGAAAGAACCATTTGGTCTTCGAGATTTTAAGCTTTTTCGACATAAATGAACGGGTTGTTATATTAAAAAGTACTGGAGTAACAGAAGAAACCATTTTTGCTTTTGAGAGTTAAAGAGTTGTGTCTTCAACCGCTTCACAACTGGAAACAGTAAATTGTGTCTTGTGAAATTGGAATTCTGTTTATTGCACACCTTTTGCTTCATTTGGAATTACTCAATTTGTAAATGATGTGGATTTTGCGTATACAAATCGTGTGCTAATATTCTGTATCATGTTTGTTCTTTCTAGTCCAAAGAGATCAAGGAGACAAAGTAGACAAGAAACTGAGAGACCACCTACCACACACAATTTAGATAGTGAAAACAATTCAGAACGGGATTTAAAACACCATCGCCGTCTGCAAGATGATGTGCCTCTTGATGCTCCGTCAGTGCAAGATTCGAAGTCAGAAAGAACTCCAAGGAAACCATCTGAGAATGTAGCAGTTAAAGATGATGGGATCAAAGAGTCTTCTGATCTCAATGAAGGTTCTCGCCATCGATCATCCAAACACTCTACAAATCCATCAGTAATACCTCATTCTACCTCATTTTTTCAGGTTTCCGTGTTGTGTACACTAACTTCATTTGCTTCTTGTGTCAGTTTGTGTTAGATTATGCCTTTGATTACTGTTGTGATAAAATTTTGGTGACCTGGCTCTTTGGAGGAGTTTGTTTCTACTTTATTGAAGCATGCGAATATACTTGATGATAGTTCCTTTATTCATTCATGTGCACAATTAGGATAACATTACTGTTAATTAGTGGGGAGGGATGAGAATGGAATTCAACTTAGCAAGAGAACAAATGAATTTTTTTTTATTTGAATAAATTTTAGGTTCTAATTGTCAGAAAATGAATAAATAAATTTCAGATTTTTGAATTTCAGTAGACGAGAATAGATTTTCCACGAACAAGTGCATTGATTTAAGTTAATGTACTCTTTTTTCTTATATTGTGGCTGATGTTGTGGGATTCTTGTTCAGCCCGTTGACTTCCAAGTAGATCCATGTATATAACCATGTTAGACTTGCCTGTGCATATCTTATAACAGCACGATGAGCGTGGTAGTGCTGGGCAAGTTGATAGAAGCTTCAGGCATAAGGCAGCAACTGGTGAGTTTCCACATATTATTCTTGCATTTTGATGAGAACCTGCCATTTTTCTTTCCTGAGTAGCAAAAGCAAGCATCAGACCAATGTGTGACGTCTAACTTGACTTACCTGTGATCAGAATCTGTCTGTAATGAGAGAACCCTCCTTTTATTTGCTTGGTGCCTAGGCCAACTTGTTATTAGTACATTATCTAGCTTTTTTCCTTGCTAATGCTGGTATATGGGCCAACTTGTGTGCACCTCAACTATTACACCGGGCCAGCATAGGTACCATGTAATTCCTCAAGTAAGAGGACTCAAACCCCAGTCTCCAATGCTCGCATCAACTTCATTGGTCGTTAGACTACACTTTTCGGTGCAAGTATGTTAGATACTTATTCTACTATGTATAACATATGATGCTCTTAAGTTTTGAGAAGTAGAAAATGCTTGAGACCTAAGTCAGCGAAACATATCTAGAGAAGAAAACAGTATTTCCTACCTGCATATTATGACCTGTGTATTTAGTGTTCAAGATTTAGTTACTATCTTTTGTTTCCCCCTGAAGAGCGAGGATGGTGGAAAGATGCGAAAGAGACATCGAACAGAGCCACAACAAATGATAAGCAGATGAATGACGAGAAGAGCAAAGTTTCAGGCAGGCAAAATGATGTTTGGCGCCATGACAGGTACTT</genome_strand>
        <mrna_strand>TCGTCTCGTCGAGAGGGTCGCGATTCCGACTCGAAACGTCACCGTTCCCGGTTCGATCAAGAACCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAAGAGATCAAGGAGACAAAGTAGACAAGAAACTGAGAGACCACCTACCACACACAATTTAGATAGTGAAAACAATTCAGAACGGGATTTAAAACACCATCGCCGTCTGCAAGATGATGTGCCTCTTGATGCTCCGTCAGTGCAAGATTCGAAGTCAGAAAGAACTCCAAGGAAACCATCTGAGAATGTAGCAGTTAAAGATGATGGGATCAAAGAGTCTTCTGATCTCAATGAAGGTTCTCGCCATCGATCATCCAAACACTCTACAAATCCATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGATGAGCGTGGTAGTGCTGGGCAAGTTGATAGAAGCTTCAGGCATAAGGCAGCAACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGGATGGTGGAAAGATGCGAAAGAGACATCGAACAGAGCCACAACAAATGATAAGCAGATGAATGACGAGAAGAGCAAAGTTTCAGGCAGGCAAAATGATGTTTGGCGCCATGACAGGTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341483" ref_strand="+" ref_description="SGN-E341483 [cTOE-23-J11]">
      <seq>tccgatttaccctaatgtcgtctcgtcgagagggtcgcgattccgactcgaaacgtcaccgttcccggttcgatcaagaacccagtccaaagagatcaaggagacaaagtagacaagaaactgagagaccacctaccacacacaatttagatagtgaaaacaattcagaacgggatttaaaacaccatcgccgtctgcaagatgatgtgcctcttgatgctccgtcagtgcaagattcgaagtcagaaagaactccaaggaaaccatctgagaatgtagcagttaaagatgatgggatcaaagagtcttctgatctcaatgaaggttctcgccatcgatcatccaaacactctacaaatccatcacacgatgagcgtggtagtgctgggcaagttgatagaagcttcaggcataaggcagcaactgagcgaggatggtggaaagatgcgaaagagacatcgaacagagccacaacaaatgataagcagatgaatgacgagaagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="3136" stop="390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2836" g_stop="2752" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2751" i_stop="2181" i_length="571">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2180" g_stop="1901" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="365" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1900" i_stop="1377" i_length="524">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1376" g_stop="1316" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="426" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1315" i_stop="770" i_length="546">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="769" g_stop="690" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="506" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E341483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2836" e_stop="2752"/>
          <exon e_start="2180" e_stop="1901"/>
          <exon e_start="1376" e_stop="1316"/>
          <exon e_start="769" e_stop="690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGATTTACCCTAATGTCGTCTCGTCGAGAGGGTCGCGATTCCGACTCGAAACGTCACCGTTCCCGGTTCGATCAAGAACCCAGGTAATCGATTATATTTTCTTGAAATAATTGGGAATTTTTTAATAGCTTTCGAATGATTTAGGGTTCGATTAAAATTCATTATTTGAAGAGCCGAGGAAAAAGGAACAGTTGGCGGGACTTTGTAATCTTGAACTTTTAGGATTTCTCGGGTCTGTGAAGTTTTTCTGTTTTTCTTTTCTGTATCGGCGTTAAAATGAAAATTGGTTACGTGAATTTGGGGTTTCTGTAGGACTGAATTTATACGAGTACTGCTGAGAGGAGGAAAAATAGTGGGGTGAGAATGAAAGAACCATTTGGTCTTCGAGATTTTAAGCTTTTTCGACATAAATGAACGGGTTGTTATATTAAAAAGTACTGGAGTAACAGAAGAAACCATTTTTGCTTTTGAGAGTTAAAGAGTTGTGTCTTCAACCGCTTCACAACTGGAAACAGTAAATTGTGTCTTGTGAAATTGGAATTCTGTTTATTGCACACCTTTTGCTTCATTTGGAATTACTCAATTTGTAAATGATGTGGATTTTGCGTATACAAATCGTGTGCTAATATTCTGTATCATGTTTGTTCTTTCTAGTCCAAAGAGATCAAGGAGACAAAGTAGACAAGAAACTGAGAGACCACCTACCACACACAATTTAGATAGTGAAAACAATTCAGAACGGGATTTAAAACACCATCGCCGTCTGCAAGATGATGTGCCTCTTGATGCTCCGTCAGTGCAAGATTCGAAGTCAGAAAGAACTCCAAGGAAACCATCTGAGAATGTAGCAGTTAAAGATGATGGGATCAAAGAGTCTTCTGATCTCAATGAAGGTTCTCGCCATCGATCATCCAAACACTCTACAAATCCATCAGTAATACCTCATTCTACCTCATTTTTTCAGGTTTCCGTGTTGTGTACACTAACTTCATTTGCTTCTTGTGTCAGTTTGTGTTAGATTATGCCTTTGATTACTGTTGTGATAAAATTTTGGTGACCTGGCTCTTTGGAGGAGTTTGTTTCTACTTTATTGAAGCATGCGAATATACTTGATGATAGTTCCTTTATTCATTCATGTGCACAATTAGGATAACATTACTGTTAATTAGTGGGGAGGGATGAGAATGGAATTCAACTTAGCAAGAGAACAAATGAATTTTTTTTTATTTGAATAAATTTTAGGTTCTAATTGTCAGAAAATGAATAAATAAATTTCAGATTTTTGAATTTCAGTAGACGAGAATAGATTTTCCACGAACAAGTGCATTGATTTAAGTTAATGTACTCTTTTTTCTTATATTGTGGCTGATGTTGTGGGATTCTTGTTCAGCCCGTTGACTTCCAAGTAGATCCATGTATATAACCATGTTAGACTTGCCTGTGCATATCTTATAACAGCACGATGAGCGTGGTAGTGCTGGGCAAGTTGATAGAAGCTTCAGGCATAAGGCAGCAACTGGTGAGTTTCCACATATTATTCTTGCATTTTGATGAGAACCTGCCATTTTTCTTTCCTGAGTAGCAAAAGCAAGCATCAGACCAATGTGTGACGTCTAACTTGACTTACCTGTGATCAGAATCTGTCTGTAATGAGAGAACCCTCCTTTTATTTGCTTGGTGCCTAGGCCAACTTGTTATTAGTACATTATCTAGCTTTTTTCCTTGCTAATGCTGGTATATGGGCCAACTTGTGTGCACCTCAACTATTACACCGGGCCAGCATAGGTACCATGTAATTCCTCAAGTAAGAGGACTCAAACCCCAGTCTCCAATGCTCGCATCAACTTCATTGGTCGTTAGACTACACTTTTCGGTGCAAGTATGTTAGATACTTATTCTACTATGTATAACATATGATGCTCTTAAGTTTTGAGAAGTAGAAAATGCTTGAGACCTAAGTCAGCGAAACATATCTAGAGAAGAAAACAGTATTTCCTACCTGCATATTATGACCTGTGTATTTAGTGTTCAAGATTTAGTTACTATCTTTTGTTTCCCCCTGAAGAGCGAGGATGGTGGAAAGATGCGAAAGAGACATCGAACAGAGCCACAACAAATGATAAGCAGATGAATGACGAGAAGAGC</genome_strand>
        <mrna_strand>TCCGATTTACCCTAATGTCGTCTCGTCGAGAGGGTCGCGATTCCGACTCGAAACGTCACCGTTCCCGGTTCGATCAAGAACCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAAGAGATCAAGGAGACAAAGTAGACAAGAAACTGAGAGACCACCTACCACACACAATTTAGATAGTGAAAACAATTCAGAACGGGATTTAAAACACCATCGCCGTCTGCAAGATGATGTGCCTCTTGATGCTCCGTCAGTGCAAGATTCGAAGTCAGAAAGAACTCCAAGGAAACCATCTGAGAATGTAGCAGTTAAAGATGATGGGATCAAAGAGTCTTCTGATCTCAATGAAGGTTCTCGCCATCGATCATCCAAACACTCTACAAATCCATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGATGAGCGTGGTAGTGCTGGGCAAGTTGATAGAAGCTTCAGGCATAAGGCAGCAACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGGATGGTGGAAAGATGCGAAAGAGACATCGAACAGAGCCACAACAAATGATAAGCAGATGAATGACGAGAAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335863" ref_strand="+" ref_description="SGN-E335863 [cTOE-6-P17]">
      <seq>cgattccgactcgaaacgtcaccgttcccggttcgatcaagaacccagtccaaagagatcaaggagacaaagtagacaagaaactgagagaccacctaccacacacaatttagatagtgaaaacaattcagaacgggatttaaaacaccatcgccgtctgcaagatgatgtgcctcttgatgctccgtcagtgcaagattcgaagtcagaaagaactccaaggaaaccatctgagaatgtagcagttaaagatgatgggatcaaagagtcttctgatctcaatgaaggttctcgccatcgatcatccaaacactctacaaatccatcacacgatgagcgtggtagtgctgggcaagttgatagaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="3099" stop="1037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2799" g_stop="2752" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2751" i_stop="2181" i_length="571">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2180" g_stop="1901" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="328" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1900" i_stop="1377" i_length="524">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1376" g_stop="1337" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="368" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E335863" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2799" e_stop="2752"/>
          <exon e_start="2180" e_stop="1901"/>
          <exon e_start="1376" e_stop="1337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTCCGACTCGAAACGTCACCGTTCCCGGTTCGATCAAGAACCCAGGTAATCGATTATATTTTCTTGAAATAATTGGGAATTTTTTAATAGCTTTCGAATGATTTAGGGTTCGATTAAAATTCATTATTTGAAGAGCCGAGGAAAAAGGAACAGTTGGCGGGACTTTGTAATCTTGAACTTTTAGGATTTCTCGGGTCTGTGAAGTTTTTCTGTTTTTCTTTTCTGTATCGGCGTTAAAATGAAAATTGGTTACGTGAATTTGGGGTTTCTGTAGGACTGAATTTATACGAGTACTGCTGAGAGGAGGAAAAATAGTGGGGTGAGAATGAAAGAACCATTTGGTCTTCGAGATTTTAAGCTTTTTCGACATAAATGAACGGGTTGTTATATTAAAAAGTACTGGAGTAACAGAAGAAACCATTTTTGCTTTTGAGAGTTAAAGAGTTGTGTCTTCAACCGCTTCACAACTGGAAACAGTAAATTGTGTCTTGTGAAATTGGAATTCTGTTTATTGCACACCTTTTGCTTCATTTGGAATTACTCAATTTGTAAATGATGTGGATTTTGCGTATACAAATCGTGTGCTAATATTCTGTATCATGTTTGTTCTTTCTAGTCCAAAGAGATCAAGGAGACAAAGTAGACAAGAAACTGAGAGACCACCTACCACACACAATTTAGATAGTGAAAACAATTCAGAACGGGATTTAAAACACCATCGCCGTCTGCAAGATGATGTGCCTCTTGATGCTCCGTCAGTGCAAGATTCGAAGTCAGAAAGAACTCCAAGGAAACCATCTGAGAATGTAGCAGTTAAAGATGATGGGATCAAAGAGTCTTCTGATCTCAATGAAGGTTCTCGCCATCGATCATCCAAACACTCTACAAATCCATCAGTAATACCTCATTCTACCTCATTTTTTCAGGTTTCCGTGTTGTGTACACTAACTTCATTTGCTTCTTGTGTCAGTTTGTGTTAGATTATGCCTTTGATTACTGTTGTGATAAAATTTTGGTGACCTGGCTCTTTGGAGGAGTTTGTTTCTACTTTATTGAAGCATGCGAATATACTTGATGATAGTTCCTTTATTCATTCATGTGCACAATTAGGATAACATTACTGTTAATTAGTGGGGAGGGATGAGAATGGAATTCAACTTAGCAAGAGAACAAATGAATTTTTTTTTATTTGAATAAATTTTAGGTTCTAATTGTCAGAAAATGAATAAATAAATTTCAGATTTTTGAATTTCAGTAGACGAGAATAGATTTTCCACGAACAAGTGCATTGATTTAAGTTAATGTACTCTTTTTTCTTATATTGTGGCTGATGTTGTGGGATTCTTGTTCAGCCCGTTGACTTCCAAGTAGATCCATGTATATAACCATGTTAGACTTGCCTGTGCATATCTTATAACAGCACGATGAGCGTGGTAGTGCTGGGCAAGTTGATAGAAGCT</genome_strand>
        <mrna_strand>CGATTCCGACTCGAAACGTCACCGTTCCCGGTTCGATCAAGAACCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAAGAGATCAAGGAGACAAAGTAGACAAGAAACTGAGAGACCACCTACCACACACAATTTAGATAGTGAAAACAATTCAGAACGGGATTTAAAACACCATCGCCGTCTGCAAGATGATGTGCCTCTTGATGCTCCGTCAGTGCAAGATTCGAAGTCAGAAAGAACTCCAAGGAAACCATCTGAGAATGTAGCAGTTAAAGATGATGGGATCAAAGAGTCTTCTGATCTCAATGAAGGTTCTCGCCATCGATCATCCAAACACTCTACAAATCCATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGATGAGCGTGGTAGTGCTGGGCAAGTTGATAGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733716" ref_strand="+" ref_description="SGN-E733716 [LB10DA07]">
      <seq>gttcatatccttgcacaaaatgcccaatttctatcagaaacaccataactcaattccctcatccaagaataccaacatctacaaaacatccaaaatccctcatctctcgtatttcactctccagtagttcatctcagagtgaccaaaaaacaagaacaaacagtataaattctgaggataactttccgaccatgtcagaaatcatggaggcatcgagatcccaaaatcttgatcttcagctgaaaacattagggccctttttcagaatcacagcgaagagcataaaaacccaaagagaccttggaaaagctgagggtttgataagggtttggtttcaaggtaaaattctacatttagactcaatcagacttcagagagagactctggggatggaaaaatcaatatttgggattggattgtttattggagcagtcgcaattaggcatggttatgactctggttgtaaaaaagctgaattgctcgccatttatgatactgagctttaccacaccaagcttgtgaaattctacacaaggattggcttcaagacagttcaccaagttagtggtgaatcacttggagatgttggtcacatgttagtctggggaggcgtaggaactcgaatggatgcagacattgaacatcttcttgtaaagtggtgcaccagatttaaaccaaagagttgattttacttcaatccttcaacgacctcgactttaactctgttgtttggctacgtacactanatatactttaagtatatgtttgatatcatatatggactgattattattttttttcccttcctactctccttagttaatgaaccaaaatggtgtttgaattttattttggaaatagtttttgaaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="5355" stop="3563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5055" g_stop="4541" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4540" i_stop="4225" i_length="316">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4224" g_stop="3857" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="883" r_length="368" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E733716" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5055" e_stop="4541"/>
          <exon e_start="4224" e_stop="3857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATATCCTTGCACAAAATGCCCAATTTCTATCAGAAACACCATAACTCAATTCCCTCATCCAAGAATACCAACATCTACAAAACATCCAAAATCCCTCATCTCTCGTATTTCACTCTCCAGTAGTTCATCTCAGAGTGACCAAAAAACAAGAACAAACAGTATAAATTCTGAGGATAACTTTCCGACCATGTCAGAAATCATGGAGGCATCGAGATCCCAAAATCTTGATCTTCAGCTGAAAACATTAGGGCCCTTTTTCAGAATCACAGCGAAGAGCATAAAAACCCAAAGAGACCTTGGAAAAGCTGAGGGTTTGATAAGGGTTTGGTTTCAAGGTAAAATTCTACATTTAGACTCAATCAGACTTCAGAGAGAGACTCTGGGGATGGAAAAATCAATATTTGGGATTGGATTGTTTATTGGAGCAGTCGCAATTAGGCATGGTTATGACTCTGGTTGTAAAAAAGCTGAATTGCTCGCCATTTATGATACTGAGCTTTACCACACCAAGGTTATTCTTCAATTTTCCCTCCTTCTGGGTTAATTATCATGCCCTGTTTTTGGATTGCAATTTCTCTTGTTGTTAATTGGAACTCCGGCTCCATTATGTCAACAAGAGGAGGATGGGAGTTAATTCCCCTTTTTTTCACTTTGCTACCAAAGCCTTTCGTCTGAGACACAGTTCAAATATGTAACATGTGCACTCTTATCACTAGACAATAGGCTTTTCTACTGCAAGCATTCACACCTACTGATTTTTACTTTCTAATTCGAGTAGAAGAGTGGATTCTGATTACAAATTGGATATTTCTCTTTGATTGTAACAGCTTGTGAAATTCTACACAAGGATTGGCTTCAAGACAGTTCACCAAGTTAGTGGTGAATCACTTGGAGATGTTGGTCACATGTTAGTCTGGGGAGGCGTAGGAACTCGAATGGATGCAGACATTGAACATCTTCTTGTAAAGTGGTGCACCAGATTTAAACCAAAGAGTTGATTTTACTTCAATCCTTCAACGACCTCGACTTTAACTCTGTTGTTTGGCTACGTACACTAAATATACTTTAAGTATATGTTTGATATCATATATGGACTGATTATTATTTTTTTTCCCTTCCTACTCTCCTTAGTTAATGAACCAAAATGGTGTTTGAATTTTATTTTGGAAATAGTTTTTGAAATAATTAATTTCGA</genome_strand>
        <mrna_strand>GTTCATATCCTTGCACAAAATGCCCAATTTCTATCAGAAACACCATAACTCAATTCCCTCATCCAAGAATACCAACATCTACAAAACATCCAAAATCCCTCATCTCTCGTATTTCACTCTCCAGTAGTTCATCTCAGAGTGACCAAAAAACAAGAACAAACAGTATAAATTCTGAGGATAACTTTCCGACCATGTCAGAAATCATGGAGGCATCGAGATCCCAAAATCTTGATCTTCAGCTGAAAACATTAGGGCCCTTTTTCAGAATCACAGCGAAGAGCATAAAAACCCAAAGAGACCTTGGAAAAGCTGAGGGTTTGATAAGGGTTTGGTTTCAAGGTAAAATTCTACATTTAGACTCAATCAGACTTCAGAGAGAGACTCTGGGGATGGAAAAATCAATATTTGGGATTGGATTGTTTATTGGAGCAGTCGCAATTAGGCATGGTTATGACTCTGGTTGTAAAAAAGCTGAATTGCTCGCCATTTATGATACTGAGCTTTACCACACCAAG............................................................................................................................................................................................................................................................................................................................CTTGTGAAATTCTACACAAGGATTGGCTTCAAGACAGTTCACCAAGTTAGTGGTGAATCACTTGGAGATGTTGGTCACATGTTAGTCTGGGGAGGCGTAGGAACTCGAATGGATGCAGACATTGAACATCTTCTTGTAAAGTGGTGCACCAGATTTAAACCAAAGAGTTGATTTTACTTCAATCCTTCAACGACCTCGACTTTAACTCTGTTGTTTGGCTACGTACACTANATATACTTTAAGTATATGTTTGATATCATATATGGACTGATTATTATTTTTTTTCCCTTCCTACTCTCCTTAGTTAATGAACCAAAATGGTGTTTGAATTTTATTTTGGAAATAGTTTTTGAAATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550141" ref_strand="+" ref_description="SGN-E550141 [TUS-5-H30]">
      <seq>tcacattctacttacagttgccatgcaatagggaacattaatgaagaattgaatgaaactcttgtacctcaaagtagtgaacctcaacctaaggttcatgaaccaaccgatactgatcatacaatagagtctgataaggtcgattcttatgtgagacaattggaggcaagcagctgtgatagatgggaagttggtgttaactgcgcgaatgatgaagcagggtctgcatcaaatcagaagcaattatttctttgggtggacgactacaaatgctctatttgtggtattgaactgcctcctagtttcattgaagaaaggcaagaacattctgattttcatcttgctgaaaagttgcaaggtgaagaatcaggtaaccaccacagaagttttatgccacaacagagggctgctcagagaggccatactggaagcagcagtcggcagaaaaagaaacagaaaccctctccaactgctagcaaatatgtaccaattgatgcattctttgttaaaacgaaccagaatttttgaaaggcataacatagtgaaactctatttattcagaagataataataaaattttctttttccatgtacaacacaacatatccagtgtggggaggatgcggnctatttctttatccatgtattctttgtatataactgtataattgtatatagtaaaacgctgcaaccagtgttatggttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="6755" stop="5234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6455" g_stop="6363" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6362" i_stop="6259" i_length="104">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6258" g_stop="5948" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="404" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5947" i_stop="5837" i_length="111">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5836" g_stop="5534" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="707" r_length="303" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E550141" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6455" e_stop="6363"/>
          <exon e_start="6258" e_stop="5948"/>
          <exon e_start="5836" e_stop="5534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATTCTACTTACAGTTGCCATGCAATAGGGAACATTAATGAAGAATTGAATGAAACTCTTGTACCTCAAAGTAGTGAACCTCAACCTAAGGTATATGTTTTTCTCACTAAAAAGCTAAAGTGCATCTATATGACCAAAGAAAGTTAAATGATTCAAATACTAAGCTTTCTAATTGTCAATGTCATTGTATTCAGGTTCATGAACCAACCGATACTGATCATACAATAGAGTCTGATAAGGTCGATTCTTATGTGAGACAATTGGAGGCAAGCAGCTGTGATAGATGGGAAGTTGGTGTTAACTGCGCGAATGATGAAGCAGGGTCTGCATCAAATCAGAAGCAATTATTTCTTTGGGTGGACGACTACAAATGCTCTATTTGTGGTATTGAACTGCCTCCTAGTTTCATTGAAGAAAGGCAAGAACATTCTGATTTTCATCTTGCTGAAAAGTTGCAAGGTGAAGAATCAGGTAACCACCACAGAAGTTTTATGCCACAACAGAGGTACCTTCTACTTCATGGTCTTGATGATACATGAATATATTTCCTCATCTAGTTTAATGCCATTGTATCAGTACTGGTGGTGTCATCCTATTCTTTCTAATTTTTTGCTAGGGCTGCTCAGAGAGGCCATACTGGAAGCAGCAGTCGGCAGAAAAAGAAACAGAAACCCTCTCCAACTGCTAGCAAATATGTACCAATTGATGCATTCTTTGTTAAAACGAACCAGAATTTTTGAAAGGCATAACATAGTGAAACTCTATTTATTCAGAAGATAATAATAAAATTTTCTTTTTCCATGTACAACACAACATATCCAGTGTGGGGAGGATGCGGTCTATTTCTTTATCCATGTATTCTTTGTATATAACTGTATAATTGTATATAGTAAAACGCTGCAACCAGTGTTATGGTTAA</genome_strand>
        <mrna_strand>TCACATTCTACTTACAGTTGCCATGCAATAGGGAACATTAATGAAGAATTGAATGAAACTCTTGTACCTCAAAGTAGTGAACCTCAACCTAAG........................................................................................................GTTCATGAACCAACCGATACTGATCATACAATAGAGTCTGATAAGGTCGATTCTTATGTGAGACAATTGGAGGCAAGCAGCTGTGATAGATGGGAAGTTGGTGTTAACTGCGCGAATGATGAAGCAGGGTCTGCATCAAATCAGAAGCAATTATTTCTTTGGGTGGACGACTACAAATGCTCTATTTGTGGTATTGAACTGCCTCCTAGTTTCATTGAAGAAAGGCAAGAACATTCTGATTTTCATCTTGCTGAAAAGTTGCAAGGTGAAGAATCAGGTAACCACCACAGAAGTTTTATGCCACAACAGAG...............................................................................................................GGCTGCTCAGAGAGGCCATACTGGAAGCAGCAGTCGGCAGAAAAAGAAACAGAAACCCTCTCCAACTGCTAGCAAATATGTACCAATTGATGCATTCTTTGTTAAAACGAACCAGAATTTTTGAAAGGCATAACATAGTGAAACTCTATTTATTCAGAAGATAATAATAAAATTTTCTTTTTCCATGTACAACACAACATATCCAGTGTGGGGAGGATGCGGNCTATTTCTTTATCCATGTATTCTTTGTATATAACTGTATAATTGTATATAGTAAAACGCTGCAACCAGTGTTATGGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236352" ref_strand="+" ref_description="SGN-E236352 [cLED-13-K11]">
      <seq>cagattctacttacagttgccatgcaatagggaacattaatgaagaattgaatgaaactcttgtacctcaaagtagtgaacctcaacctaaggttcatgaaccaaccgatactgatcatacaatagagtctgataaggtcgattcttatgtgagacaattggaggcaagcagctgtgatagatgggaagttggtgttaactgcgcgaatgatgaagcagggtctgcatcaaatcagaagcaattatttctttgggtggacgactacaaatgctctatttgtggtattgaactgcctcctagtttcattgaagaaaggcaagaaacattctgattttcatcttgctgaaaagttgcaaggtgaagaatcaggtaaccaccacagaagttttatgccacaacagagggctgctcagagaggccatactggaagcagcagtcggcagaaaaagaaacagaaaccctctccaactgctagcaaatatgtaccaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="6754" stop="5446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6454" g_stop="6363" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6362" i_stop="6259" i_length="104">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6258" g_stop="5948" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="404" r_length="312" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5947" i_stop="5837" i_length="111">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5836" g_stop="5746" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="495" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E236352" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6454" e_stop="6363"/>
          <exon e_start="6258" e_stop="5948"/>
          <exon e_start="5836" e_stop="5746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTCTACTTACAGTTGCCATGCAATAGGGAACATTAATGAAGAATTGAATGAAACTCTTGTACCTCAAAGTAGTGAACCTCAACCTAAGGTATATGTTTTTCTCACTAAAAAGCTAAAGTGCATCTATATGACCAAAGAAAGTTAAATGATTCAAATACTAAGCTTTCTAATTGTCAATGTCATTGTATTCAGGTTCATGAACCAACCGATACTGATCATACAATAGAGTCTGATAAGGTCGATTCTTATGTGAGACAATTGGAGGCAAGCAGCTGTGATAGATGGGAAGTTGGTGTTAACTGCGCGAATGATGAAGCAGGGTCTGCATCAAATCAGAAGCAATTATTTCTTTGGGTGGACGACTACAAATGCTCTATTTGTGGTATTGAACTGCCTCCTAGTTTCATTGAAGAAAGGCAAG-AACATTCTGATTTTCATCTTGCTGAAAAGTTGCAAGGTGAAGAATCAGGTAACCACCACAGAAGTTTTATGCCACAACAGAGGTACCTTCTACTTCATGGTCTTGATGATACATGAATATATTTCCTCATCTAGTTTAATGCCATTGTATCAGTACTGGTGGTGTCATCCTATTCTTTCTAATTTTTTGCTAGGGCTGCTCAGAGAGGCCATACTGGAAGCAGCAGTCGGCAGAAAAAGAAACAGAAACCCTCTCCAACTGCTAGCAAATATGTACCAATTGAT</genome_strand>
        <mrna_strand>CAGATTCTACTTACAGTTGCCATGCAATAGGGAACATTAATGAAGAATTGAATGAAACTCTTGTACCTCAAAGTAGTGAACCTCAACCTAAG........................................................................................................GTTCATGAACCAACCGATACTGATCATACAATAGAGTCTGATAAGGTCGATTCTTATGTGAGACAATTGGAGGCAAGCAGCTGTGATAGATGGGAAGTTGGTGTTAACTGCGCGAATGATGAAGCAGGGTCTGCATCAAATCAGAAGCAATTATTTCTTTGGGTGGACGACTACAAATGCTCTATTTGTGGTATTGAACTGCCTCCTAGTTTCATTGAAGAAAGGCAAGAAACATTCTGATTTTCATCTTGCTGAAAAGTTGCAAGGTGAAGAATCAGGTAACCACCACAGAAGTTTTATGCCACAACAGAG...............................................................................................................GGCTGCTCAGAGAGGCCATACTGGAAGCAGCAGTCGGCAGAAAAAGAAACAGAAACCCTCTCCAACTGCTAGCAAATATGTACCAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275296" ref_strand="+" ref_description="SGN-E275296 [cLEN-9-L21]">
      <seq>aaaagagtagttccctttgtggcctgttttctcgttcttcagcagactttttcctttccgtaagtctagggcttggtggaaccgatactcctcaatataggatgagaaagagtataagtaacgaaagaacattttcagccactagcgacgaagctttgctttttcaaaaattagttgatctatcagaaatgctttctgctgatatgataaaggaaggtctttttgggcgaacattgacactaaaactgaagaccgcatcctttgagattcgatctcgagcggtgactttgccaagttacataagttccagtgaggaaatcttgaaacatgcttcaaagctgcttaaggccgaatttcctgtttctttgaggctcatgggtcttcgaatgtctcatttcagtgaagacaagaacgggattccacctgatcctacacaaaaaactctntctagtttcattttttctggagatgcttctggaggaaagacaagtgattacaggcccttggtctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="8852" stop="6258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8552" g_stop="8508" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8507" i_stop="8285" i_length="223">
            <donor d_prob="0.457" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8284" g_stop="8156" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="174" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8155" i_stop="7984" i_length="172">
            <donor d_prob="0.746" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7983" g_stop="7892" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="266" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7891" i_stop="7803" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7802" g_stop="7691" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="378" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7690" i_stop="6692" i_length="999">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.631" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6691" g_stop="6558" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="512" r_length="134" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E275296" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8552" e_stop="8508"/>
          <exon e_start="8284" e_stop="8156"/>
          <exon e_start="7983" e_stop="7892"/>
          <exon e_start="7802" e_stop="7691"/>
          <exon e_start="6691" e_stop="6558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGTAGTTCCCTTTGTGGCCTGTTTTCTCGTTCTTCAGCAGGTTTGATAATGATACAATCGATCTCTTTATTACCCCTTAATCTGACAAGAACACAACCTAGAAAGTTCAATCTCGATTTGAGCTGTATAATATGATGTTCTTTGTGTTTGAGAGGTTTTCTTCAAATTTGATCAACTGAAGTGGTCACTGCTTGTGTCCTGAATTTTCCCCTTGATGGATTCTTCTGTATATTGACAACATATCAGTTGCCTTTTTGTTGCAGACTTTTTCCTTTCCGTAGGTCTAGGGCTTGGTGGAACCGATACTCCTCAATATAGGATGAGAAAGAGTATAAGTAACGAAAGAACATTTTCAGCCACTAGCGACGAAGCTTTGCTTTTTCAAAAATTAGGTATGGTTTTAGTTACTGCAGGGTTTCAGATTGCATGACCAATGCATATGTCCCTTCTCTCCCCCCCCCCCCCCCCTTTAGATTTTTGAGTATGGAGAAATTTTCCTTCTGCTGGAAGCCCAGAAATAATTTACCCTGAAACCAAGTTAATTTTACTAACTTTGGCTTGCAGTTGATCTATCAGAAATGCTTTCTGCTGATATGATAAAGGAAGGTCTTTTTGGGCGAACATTGACACTAAAACTGAAGACCGCATCCTTTGAGGTACTTCCAACATTTTGCTTTAGTGACTTTTACTACATAGATTTAGGTTATTTCTATATAACATTAGCTGATATAGTCAAGGTCTCCAGATTCGATCTCGAGCGGTGACTTTGCCAAGTTACATAAGTTCCAGTGAGGAAATCTTGAAACATGCTTCAAAGCTGCTTAAGGCCGAATTTCCTGTTTCTTTGAGGCTCATGGGTGGGTACTTAAACATTGTTCAGTTCCTTTTAGAAAATATGGTTGTCTTGTGTGGTTTCCCTTCTCTATATTGCTCAGTGCTATAAATAAGCTGTTATTGTTTTTTTTTGTGTGGGGGAATATTAAGATGATTGTGTTTGTGGAGAAAAGCATAAAATATGTGCCTCAAAATACTTAAATTCACATGTGGTTGAAATCATGTACTGATTTATATACCACAATACACTTCAATTTTTTAATTTTTTAATTTTTAAAAAAGATTATAAGCTGTTGATCAAATATTGTCTGCTTTTACATCTTAGCGGAGTCATCTTCTTTCCTTCTGCTTAATAACTGCAGATGATGAGTGAAAGGGGGACCTGGAATTTGATGTGTTAATATTTTTATTTGGTTTGAAAAATTCATGATATCAATTGAAATTTGGTAGCAATGTGTAGCTTGAAGTTTGCAAAATTTATTTTCTCCTAATCTTTCTGAGGCTGCTATCGGATTGAAGGAGAGGTTACAGCTACTAATGAATAAAACGTTCGAAAGCCTATAATTTTTCTGAAGAAGGTTTACATTATCAGGCAGTGCAAAAGAAGAAGCAAATATAGAGAACAATTCATAGATTTTATTAGTTCCTTAGGCTATTTGGATTTGCTGTTTTATAGGTCTTATTTTGATTTGTATGAGGGGACTTTGCCCTCTTTTACAACAGTGGAGGGGTTTTAAATTTTTATAATTGTGCTTCTATCAGTTTTCAATGCTGTCCCACTCACTTGCCACCATGTTTCTGTAACTTTTAATTTCATTCATTGGTTAATTATGGATTTATGAATGTGCTTTGGGGGCATCAAAAGGCCTAAAACAGAATCCAAACACCATTAATATTATTGTCTTCCCTGAGCTGGAAATGACATGTTCAGCTGTTGCCATTACCTATTTTGATGTTGTTTTATTTGACTGCAAATTTCCAGCATGAGGCATTTTGACTAAGCAGTTGAACTTTTCTATCAGGTCTTCGAATGTCTCATTTCAGTGAAGACAAGAACGGGATTCCACCTGATCCTACACAAAAAACTCTTTCTAGTTTCATTTTTTCTGGAGATGCTTCTGGAGGAAAGACAAGTGATTACAGGCCCTTGGTCTCT</genome_strand>
        <mrna_strand>AAAAGAGTAGTTCCCTTTGTGGCCTGTTTTCTCGTTCTTCAGCAG...............................................................................................................................................................................................................................ACTTTTTCCTTTCCGTAAGTCTAGGGCTTGGTGGAACCGATACTCCTCAATATAGGATGAGAAAGAGTATAAGTAACGAAAGAACATTTTCAGCCACTAGCGACGAAGCTTTGCTTTTTCAAAAATTAG............................................................................................................................................................................TTGATCTATCAGAAATGCTTTCTGCTGATATGATAAAGGAAGGTCTTTTTGGGCGAACATTGACACTAAAACTGAAGACCGCATCCTTTGAG.........................................................................................ATTCGATCTCGAGCGGTGACTTTGCCAAGTTACATAAGTTCCAGTGAGGAAATCTTGAAACATGCTTCAAAGCTGCTTAAGGCCGAATTTCCTGTTTCTTTGAGGCTCATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCGAATGTCTCATTTCAGTGAAGACAAGAACGGGATTCCACCTGATCCTACACAAAAAACTCTNTCTAGTTTCATTTTTTCTGGAGATGCTTCTGGAGGAAAGACAAGTGATTACAGGCCCTTGGTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306466" ref_strand="+" ref_description="SGN-E306466 [cLEX-13-K5]">
      <seq>aaagataatatctcccacagagcggaaaaaaagagagaagaaaatcagaaatgcgcgcgcaaaacggcaagaataaaaatataataatttaaagagttgtaattttatactaaaaattctctgcttattgctgagaacattctccgactccgaggtcccatagggttgtgattattcacttcaggtatccccggaaagtttgactctgaattttggagtttcagatcttattagtaaactgaacgtgcgagcccaactctgtactattgcagggatttcttggttgttctatgttgaattttggagttccgatcggcttacttgtaaactagagagggatcttttgggtgtaagatgctgaaccttggagttttagatctgcttttttgtaaactgaacagggatcttttggaagttagacattgaatgttggagtttcagatctgtaaactgaacagctcatgttatgcgattttgggtgcaaagcaacatggtacaatgaagttcatgcttttttgtttcactcaagtgaaatgaaaatggctcatgaactgtggatatccgtttcatttcttattttgacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="+" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="40828" stop="53543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41128" g_stop="41311" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41312" i_stop="45369" i_length="4058">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45370" g_stop="45457" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="272" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45458" i_stop="46075" i_length="618">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.140" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46076" g_stop="46139" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="336" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46140" i_stop="48665" i_length="2526">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48666" g_stop="48730" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="401" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48731" i_stop="51697" i_length="2967">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.551" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51698" g_stop="51754" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="458" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51755" i_stop="53115" i_length="1361">
            <donor d_prob="0.802" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53116" g_stop="53243" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="586" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="+" ref_id="SGN-E306466" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41128" e_stop="41311"/>
          <exon e_start="45370" e_stop="45457"/>
          <exon e_start="46076" e_stop="46139"/>
          <exon e_start="48666" e_stop="48730"/>
          <exon e_start="51698" e_stop="51754"/>
          <exon e_start="53116" e_stop="53243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATAATATCTCCCACAGAGCGGAAAAAAAGAGAGAAGAAAATCAGAAATGCGCGCGCAAAACGGCAAGAATAAAAATATAATAATTTAAAGAGTTGTAATTTTATACTAAAAATTCTCTGCTTATTGCTGAGAACATTCTCCGACTCCGAGGTCCCATAGGGTTGTGATTATTCACTTCAGGTTTGTTCATCTTCCTTAATTTTTCAATAAGTTATTGTCGAATTCATACTCTATTGCAGCCCAAATTGTTTGTTAATTTGTGTTTACAAGTTCGAAGTGTGACCTAATTGTTCGTGTTTGAGTGTTACTTCGCTGTATTTTGCTTTGCTTTCTACTCTTATTCTTCGGGGTTGAAAGTAGTATTCTAGTACTTATATTGTAGGATATGGAGTTTAACGTGTTTATTTGACTTGCCTCCTAGAGGAAAAAATATATCTAAGTACTAGTTGAAGAAATCAATTTGATTGAAAATCATTCAAAAGATAGAATTTGATAGATTGGTCAATTTGAACTTCTTAAAGTTGTTGAAAGTTTTATAGAATGGTATCATTGGTGGAATTTTATCAAATATTCCCAATATAAGAAGAGTAAATTGGAATTAGGTCAATAGTGGTTCCTGTTGCTGATGGGAGTTGGCAGGTACCCGTGGAATTAGTTGAGGTGTGCGACAACTAGCCCACACACCACACTAATTTTAAAATATTAAAAAAATGGGATGGAGGGAGTAGCTTATATTGTGATTTAGCTTCCAAATATTTCTGTTCATTTCTTTGTGTTCATACTCTTCGCAAATTTGTGAAATTAAATGGTTTTGTTTTTTCATCACAAGTCGGGGTTCTGCAAGGTATCTCACTTTTTATGTCAACTTTTGAATTGAAAAAATAGTTATCTGCTCTTGCTTATATTACATATTTACTTGTTAGGTTTTGTATTCAAGTAGACACATTGCAATATCCTAGTGGGTTTTGTAGTGTTTACTAAGAGTTCCCACTAGCAAATGTAGAATTCATTTTCTGATGGGGACTTCTAAGTTTGATTAACATTAATATCAAATATTTCCCTAACCACTTGTTAGAAGGAAGAAAGCGTGGTTTGTGCCAGAGATATATGGCATTCCACATCAGGGGCATAAGAGCATCCAAAATGGTTATTAAAAAATCTTAAACTACTTCACTTATTGCCTGTAGCATCTTGAATTGTGTGCTTGGGTTCTCTTAATTAGCTTCAAAGCAAGGTCACATGTTCATCTTCACTGTTGGTGGTGTCCAGGGTGGAGAATTGTTTGTGAGGAGGCCAATGGGCCGAGTTTGCACCTACCTCATGGCAACGGTTTACCAGGCTGTTACAATTAGCATGTGAGCTCTCATATATGTGAACCTTTTAAGAAATAAAAATGCAATCTTACTAGAATTAATGTATTAAAAAGTACTTGTTTTTTTCCTGGATTTTACCATTTCAATTAGATGTTTAGATTCTTTCATGTGGTAACAAAATCTACATATGAAGCCTGTTGCCTCGCAGTAACTTTGATCTTCATCCCATGGCTGAATCGTGAACCCTTAAAATGGATTGTCTCTTATTTTTCTTGTGATTCGTAGTCTGATATGTTAAATTATCACTAGTTCTCCAAGTGATTAATAAGATAATATTTTAGAATACTATGTTTTATCTTTAGAGTGTGTTTGGTATGAAGGAAAACATTTTTTGGAAAATGTTTTCCAATTTTCTTATGTTTGGTTGGGGCAAAAGTTTTGGAAAATGTTTTCCAAATCAACTTATTTTCCTCAAAATTAAGGAAAATGTATTCCCTTCAAAAATTAAGGAAAACATTTTCCAAAGCTCTCCTCCAATTTCAAATTACATTTTTTTTTGGAAAACAAACATTAATTTTTTTAAAAAATATTTTCAATTTTAAAATTTTATTTTTTCACCCGATCTCTGACTACCCTCCCCTTGCCCCCCTCCCCCAACACCACCCCCTCCCCAAAAAATTAATTTTGCTTTTTCCCCCTCCCCAAAAAATTAATTTTGCTTTTTAAAAATATTTTCAACTCCAATTTTTTATTTTTAAGCTCCTACCTCCCCTCTCCCGGCCAGCCCCCCTACCCACCTATCAGCCCCCTCACCCCCACCCCCAACCCCCCAAAAAATTAATTTTATTTTTTTAAAATACTGTCAACTTCAAATTTTTATTTTTTTTACTCCTACCCCCTCCCTCTGCCCCCCCCCCTACTACCCCCACCCCCTATCATCACCACCAAAAAAAATTGTTTTTAAAAAATATTTTCAATTTCATAAATTATTTTGTATTCTAGTAAAAATAAAAGATATTCCTCAAAAATATTTTTCATTCATAAATCAAACACAAAATCATTTCCGAAAAATATTTTCTACTCACCACCAACCAAACATGAGAAAATAAGTCCAAAATCTACTTGTTTTCCAAGAAAACATTTTCTAGGAAAACATTTTCCATGGAAAACATTTTCCTTCATACCAAACACACCCTTAGTCTATAAGGTTTTGACATTTTTTTCCTTTGAATGAGTACTTGCTGCATGTATAATATCACTAGTTGTGTTTATTAGTATTTACTGTTGTTTTGTACTTCCCTAGGTTTACCTTGTACTTGGTTTCAAAAAGCTTTTGGTTTTTGTAAGCCACAGTTCTTTTCCAGAAAAAGTAATTTTTTTGAACCGGGTGTGTTTAGGGATAGTTAGTAGCTAATAGGGAATAAAAATGTGTTTTTGTTTGATTGTTCTCTTTGTATAACTTGTTTTTCTGAAAACCACTATTTAGACTCTTTCATGTGAGTCTTTGTCAAATTTATGGAATATCCCTCCTGAATTTTTGCTGCAGAAGTGGATAACATTGAGAGAAATGGTCTTATTTGTAACACTTGGTCATTTGTTTACTCTTTGCTCACTACTTGGTATTGGTTTGATTTATGCGACTTCGTTTCAATTATTCTTGATTGTGAGTTGGAAGGGACCCATCTAATCTAACATGTGCCATGTGTGATGAGACTTAATGAAAATTTCTTTGCACACCTTTGTGTAGGATTTGTTTTAATTGTTTGAAAAAAAATGCTCGTTTTAGGATACGATAATAGGTTTTCCAAGCCTACAATTCGCATGAAGTATCCCTAGTTGTCCCATTTGAGCCTTAAGGGATCTTTCCAGAAATAAAAAATTGTTTTGTTGAGGCAATTTCACCTTGTGAGTTATTTGATTGTAAATGTTATTGCTTATCTTCAACTTAGACTTCAGATGCTCCGTTTTTCATACCAGCTGATTACTTTAATATTCTTTGGTAGCTTCCCCCCTCTCCCCCCCCCCCCCCCCCCCCATTTTTTTTTAAAGATAACATCATCATTTGGTACTTTTGCTGGCTCCCATTTGGATATGGGAGATGGTTAGATACTCAGATGGGTTGCTTAAAATATGACGCCTTTGCAGCTTCCTCTGATTTGTGCTGCTCTCGTGCCTAAAGATTGTATCTGCTTTCATTGTTACTGAAGCTCGTCTCTTTACAGTCCTTTTCTATCATTCTCAACCTTTTCAGCATCTGGAATAAAAAAGCCATTGAAACTGTCTAGTGATTGGGAACTGTCAATGGAATGAGGCCAGGATTTTGTCATTAGCTGTATCAGTATTGCATATTTGAACACATAGTTTGAGTAGGTCACAGCTTAAGTAAGAAAGCTTCCACTACATTATGAATATCACATTTGTAGTTAAACACGGGCTCTCTCGTTGGGTTCTTTTATTACCAATTTTCTTTTAGCTATACCTTCCTTATCTTAGATTCTTTTCACTTGTTTTCATGAAACGGCGTAGCTCATGGTATGTGAATTGGTACAAAAGAACACGGTACAATGATGTTCATGCATCTTTAGCTCTCTTAATTGAAATGAAAATAGGTATTTGAACTATGGATACCCATTAGTTCCTCATTTTGACGTGAAAGTCTAGAGAACTCTTGCCTCAATTTTGTGAATGACCTCTGAGCCGTTGATCATCAGTGATTAAGGCAAAACACCCTTGATCCCTAATTGATGTTTTAATCCAAACTTTATGAATCTTTGATATAAAGGGAAACCCGGTACTAACTTAACTTTAAGTTTTGCCTGCTTAGTCAAATTGGAATCAGATGGCAAAAATGGGAAGCATATCTGAAATGATGGCTGATGACAGTTGAGACACTTGAACTTACCCGTTTTAGCATTTTATATTCAGGTATCCCCGGAAAGTTTGACTCTGAATTTTGGAGTTTCAGATCTTATTAGTAAACTGAACGTGCGAGCCCAACTCTGTACTATTGCAGGTATTTATTAATTATTTGCTTATACATCTAGATTTACCTTATTCAGCTTTAGGTGACTCGTGTCATTTGGTTGTCCATGAGAGTGGATAGAAAGCATTTTGCCTGGAAATATTGTTGTATGAAGACATTTGGCTGAGTGTCTTAGTTGACTTGTGATCAAAACACCTAACTTAAGGGAAACAACAAACTGCTCTTGAAGTCAATACACTAGGTGAAGTTTAGTGTAAGCTTTGACAAAGCATAATTATGTCTGGACTGTAGAAATGATGCGCCGTTGCTCAAGTAAACTGAAATAAAATGACTCATCACTAGCATTATCCAATTTAACTCCAAATGTGAGTAGGAAATCAGAGAGCTTTTTTCCAAAAAGAATGTCAAATGATGTACTGTTTGATTTTTAGTAACACCTTTCTGCTCCTCATCAAATGAATTTAAAAAATAACACCGTTCTGCTAAATAATTCTGTTATGATTGTTGATCTGTATGTCTAATATCAACAAACTTTGATGGAAAGCAAACATTTGATTTGTTTCTGAAGGGAAAATTGCAAACCCTTAAATTTTCCTTATCATAGGTGAGATAATTCTTGTGCTAATCTATCTAAGCTTTTGAATATAGGGATTTCTTGGTTGTTCTATGTTGAATTTTGGAGTTCCGATCGGCTTACTTGTAAACTAGAGAGGTTAGCACAAATCCATATACTACCAGCACTCGTGCTTTGTTATTTTTATCTTGTAGTTCTGAAAATTTAGCTTCCAGAGCATCAAATCTTGCCATTCCATTTTCTTTATTTGATAAGGATGCATCTTGGCCTAAATGTTGTTATCTGAAAAAAACATGACTTTTGGCTGATTGACTTGGCTGACCTTACATCAGAATATGTACTGAACAGGAGACTGGAAAGAGCTGCAAGTCAAGCAATATATGTGGTTTACTAAAATACACTAGAAAGAAGAATCAGTTCTAGAACTTTTTGGATTACTAAACTAATTAATTTTAACTGTCTAAGATGAATAACCATTAATCATTGGAATCCTACCGAATTCATAAATGCATAATGTGCTTACTGCAATTTCCGGAACACAAATCTCACTATTGAATATTCAGCAAAGTGTTAAATGGATATCCAACATTTGCCTAAAAATCCTTTATAACTATCAGGAGTACAGGCTTGAAAAAAGGCTCTTGAAAATTTGGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACTACTAGACCAAATGCCCAGCTGTTTGTTGGTCTCTCAGTCTAAGAAATAATTAGAAGTTCCATGTCAGTTATTCAGACCCTATACCATTTTTTGAAATGATTTTCTTGGAGGGATAAGCATTTTCTAGTCTCTAGGGACTCGGGGGATCCTTCCTTGTGTCAATCAGTGTTATGGTCCTTCACGAATTTGATTTTAGTTTTATAGTTATCTTCATTTTTACACTTGAGAGATCTGAAAAGGTTATTTTCTTCTATTCAATGTGTAAGCAGTCATAGGAGATCATTTCTTCCCTCTCCCTCCCTCCCTTTGTTAAAATGAAGTATATAGACTATAGAGAGGCATACTATGCTATTAAAGTTGCTTAAATTGTAGACATTATTGAAGTAGGTTGTATCTGGTATTCTGGTTGTATGTGAACAAACTCAACTGTAGAGGAGGAAAATGTCTCCTATGGCAATGCAGAGTCAGTTACAGATGAAGGAGCATTTGGAGAGTTAAATCAACTTTAGAGTAAATAAAACTTTAACAAAATCAAGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCTGCTTTTGTTGGTCCCCCAATCTAAATGATAGTTGGAAGTTTCATATTCAGTTGTCTGGAGTACCATCTTATGAAATGATTTATAGGAGGGATGAGAATTCTTCTGTGTCTAGGGGATCCTCCAATGTAAAAATAATGTATACAGTGAGACATAACATTGGAAGTAGTTGTAGAAATGGGGAAGTTTCCCATATCTGGTTGTAATATCTAAACGTACTCAACTGTAGAATCAGCAAGAGATGAATGAGCCCTTGGAGAGTTAATTAAGCTTCAGTAAATTAAAAAATTTATCTAAATGAAGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCATTGTTGGCATTGTCTTATTTGAGCTAGGCAAATGTATTTTCCCCCTTTGAGTTATTTGATCCCAAATGTCATTGCTCATCTGTAATGCAAGAATTCAAAGACTCCATATTTTACACCAGATGATCTTCATTTCTTGCTTAAATGTTCTTGTTGCTTAGAATATATGCCTCTGCAGTTCCTCTGATTCTCACTGCACTTGATGCCTAAGACGCTCTCAGCTTTGGTTGGTACTGTCACTTGTATATTTACAATCCTATGCTATCATATTAAACCCTCTGGTCATCTGGAATCCAAAATCCATGAGATATGTCTAGTAATTAAGAACTTCCATTGGACATGAGGCCAGGTGTCTAGCATTAGCTGGAGTAATATTACATGTTTGAGCTTCATAGATCGAGTTAAGTCGCAGCTGAAGCAAATAAAAGCTCCAGTAAGGAGTATCACATTTGTAGTTCAACATGGGCTTTTTGCTGGGTTCTCTTACTTCCAGTTCTCTTTTGGGCCTTATTTATTACTATAATATCATCATTACTTGTTTCATGGAATAGTGCAGATCATGTTAAGTAATTTTCATGATATATAATTTTTGGGTGCAAAGCAACTTGGTACAATAATGCTCCTGCTTTTTTTCTCTCTCACTGAAGTGCAATATAAATGGCTCATGACCTATGGATATCGGCTTTATTTCTTATATTGACTTGAAATTTTGAGAGCTACTGCCTTGGTTTTGCACAACATCTCTATGTCATTGATTAATGATTTCAGTTTTTACTGTTAACTTCCTTGACTCCTAAATGACCGTGTTATGGATCAAACATAATGATTATTTGATGTTACAACAAATCCATGTACTAACTTCACTTTTAAGTCTTGCCTGCTTTGTCAAATTTAAAATGGATGGCAAAAAAGCAAATCTGAAATAATGGCTTATGATAGAAGAGATACTTGAACTTGTCTGTTCGACATTTCATATTTAGGGATCTTTTGGGTGTAAGATGCTGAACCTTGGAGTTTTAGATCTGCTTTTTTGTAAACTGAACAGGCAAGCCCAACTCTGCACTCAAGTAGTCATGATGGATTGATCTGTATGTTATAGATCTAGATTTACCTTATGCAGCTTCAAGTGATTCATGTCATTTGGTTATCCATTAACATGAATTAAAAGAATCTTTACCTGCAAATATTTTTGTATGAAGACTTGAGATCAGCTTGCCAAAATGGGAACAATAAAGAGCTCTTGAAGTCAAGCATTAGGTAAGGTCTGGCATAAGCATTGACAAAGCAAAGTTAGGTCTTGACTGTACAAATGGTCCTACATCTTGATATAATAATAAACTAAAAAATTTATTGATTCCCCTGTCACATTAAACTGTCAGCATGTGACCCAGTGTGAATTCTATTTTTTGAATCTTAATTACATAAATGGCTGATGAACTTGCTGGAATTTTCAGAACATCAATCTGAATGCTTTCTTTTAACAAAATACTAAGAATCTTGCAATCCCTGAATCATACAACTAGATCAAATACCCAGTTATTTATGTTCCTTATAGACAATGTTGCAATAAGATTAACACTAAGTCATCCAAGATGAGAGTGTGTGCTAGTTGAAATTTTTTGTTTCCATTGTTAACAAGGTGGAGGATAAATTATAGCATTGGCATGATAATTTTGAGACTGCAGACTTTGATGTGTATTTTCTTGTAAGATCTCTGGCCAATCACACTAGGTTATCCATCAGTGTCCTGCTTAATTTTAATATATCAATTAGAAAAAAGAGTGAAGGAGCAGTTGTACAAGTAAAATGGCCTGCTTAATTTTAATATATCAATTAGAAAATAGAGTGAAGGAGCAGATATACAAGTAAAATGAAGTAAAAGAGTTACTTTAGCTGGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCTGCTGTTTGTTGGTCCCTCAATCTAAATAATAGCTGGAAGTTTCATGTCTCTTGTAAGCTTGTGCCATTTTTTGAAATGATTTTCTTGGAGGGATGAGCATTCTCCAGTGTCTGAGGGATCCTTCCTGGGCTCAATCGGTGTTATGATCTTTTACAAATTTGTTTTTAGTACTATAAAGATCTTCATTCTCACATAAGAGATCTAAAAAGGTCATTTTCTTTCATCCAAATTTTAAGTGTTCATAGTAGACCATATCCTCCCCCTTCCTCCCTCCCATTGTTTTAGTACTATAAAGATCTTCATTCTTACATAAGAGATCTGAAAAGGTCATTTTCTTTCATCCAAATTTTAAGTGTTCATAGTAGAACATATCCTCCCTCTTCCTCCCTCCCATTGTTAAAATAATATATGTAGAGAGGGGCATACTATGCTATTAAAGGTGCTGTTATTGTAGACATTATTAAAGTTGGTTGTATCTGAACAAACTCAACTATAGAGGAGGAAGTATTCTCCTACAGCGAATGTAGAGTCAGTTACAGATGAAGGAGTATTTGGAGAGTCAAATCAACTTAAGAGTAAATAAAAACTTAAGCAAAATAAAGGGGCATTCCGGGAATCGAACTCGGGACCTCTCGCACCCGAAGCGAGAATCATACCACTAGACCAAATGCCCTGTTTTGTTGGTCCCCCAGTCTAAATGATAGCTGGAAGTTTCATCTCCAGCTGTCTTGAGCTTATACCATTTTATGAAATAATTTTCTAGGAGGATGAAATTCTCCTGTGCCTAAGGTCTCCTCCAATGTTAAAATAGTGTATACAAAGACACATAACATCACAATTAAAGGTGTTTTAGTTGTAGAAAATATCTTAACATACTCAACTGTAGAATCAGCTAGTGATGAAGGAGTTGGTGAGTTAAATTAACTTAGAGTAAATTAAAACTTTAGCAAAACCAAGGGGCATTCCGAGAATCGAACTTGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCATTGTTGACATTGTCTTATTTGAATTTTAGTCAAATGTATTTTACCTCTGTAAGCTATTTGATCACAATTGTCATTGCTTACTGTAATATAGAATTCAAATAATCCTTATTTTACACCATATGATCATCATTTGCTTGCTTAAATTTTCTTGAGTACTTTGCTTATTAGGATGTGAGGGTTATATAGAAGGTTGCTTAAAATAATATGCCTCTGCAGTTCCTCTGATTACTCCTGTTGATGCCTAAAGATGTTATCAGCTTTGGTTGCTTCTATCACTTGTATATTCACAATCCTATGCAATCATACTCAACCCTTTGGTCATCTGGAAACCAAAACCCGTGAGATCTGTGTAGTGATTAAGAACAGTCATTGGACATGAGGCCAGGTCTCCAGTGTTACCTGAATTAAAATTTCATGCTTGAGCTTCATCGTTCAAGTTACAGCTAAAGAAAATAAAATATCCTCCAAGGAGTATCTAGTTGATAGTTAACCATGGGTTTAAAGTTACCAGTTTCAAAAAGAATAGTTAACCATGGGTCTTTTTCTGGGTTCTCTTACTTCCAGTTCTCTTTTGAATACCTTCTTTATAAGCTATATTAGTATTACTTGTTTCGTGGAATGGTGCAGCTCATGTTATGCGATTTTGGGTGCAAATAATGAAGTTCATGCTTCTTTGTTTCACTAAAGTGTAATGAAAATGGTTCATGAACTATGGATATCCGTTCCGTTCCTTATTTCGACTTGAATTTAGAGAACTTCCTTTATTTTTTTTGTGGAAGATTCGTGTTGTTGATTAATGATCTCAGTTTTATTGTTAACTTCCTTGACTCGTAAATGATCTTGTTATAGATCAAACATAATGATTCTTCGATGTTACGACAAATCCATGTACCAAATTGACTTATAAGTTTTGCCTGCTTTATCAAATTGAAAATGGATGGCAAAAAAGCATATCTGAAATGATGGCTTGTGATATTTGAGATACTCCAACTAATCTGTCCAACAATTATTTAGGGATCTTTTGGAAGTTAGATATTGAATGTTGGAGTTTCAGATCTGTAAACTGAACAGGCGAGCCCCCAACTCTGCACTATTGCAAGTATTCATGATGTATTAAGTTTTAGCTTATAGATCTAGATTTACCTTATTCAGCTTCAAGTGCTCATGCCATTTGGTTGTTCATTAACATGAATAAATATAATCTTTATATGCGATTTTTGTTTTATGAAGAAAGTCGATTGAGTTTTATAGTTGACTGGAGATCAACTTACAAAAATGGAAACAATGAAGAGCTCTTGAAGTCGAGCATTAGGTAACATTTGGTACAGATTATTGATTCCCTTGTGGCATTAAATTGTCAGCATGTGACCAAGTGTGAATTCTTTTCTTTTGAATCCTAGTTACATAAATGACCCTGCTTAATTTGCATGTACTATCACTTAGAAAATAGAGTGAAGGAGCAGAGTTGCAAGTAAAATGAATTAAAAAGTTGTATTAGATGGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCAGCTCTTGTTGGTCCCTCAGTGGTAATAATATTTTGAAGTTGATATTGGTTGTCTGGAGCTTGTACCATTGTATGCAATAATTTTCTAGGTGAAATAAGCATTCTCCATTGTTTGAGCCTTTGAAAAGTTAAATCATTTTAGAGTGAATAAAAACTTATATAAAATTAAGGGGCATTCCGAGAATTAAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCATCGATGACATTGTCTTCTTTGAATTTTAGTCAAATGTATTTTAGCTTTTCAGCTATTTGATCACACAACTGTATTGCTTACTGTAATATAGAATTCAAATAATCTGTATTTTACACCATATGATCTTCATTTTCTTGCTTAAATGTTCTTGAGTACTTAATTATCAAAAAAATGTTCTTTGAGTACATGTTATTTGGATGTGAGGTGTATATAGAAGGTTGCTTAAAATAATATGCCTCTGCAGTTCCTCAGATTACTTCTCTCAATGCCTATAGATGCTATCAGCTTTGGTTGTTACTATCACTTCTATATTTACAATCCTATGCAAGCATACTCAACCCTTTGGTCGTCTGGAATGCAAAAGACGTGAGATCTGTGTAGTGATTAAGAACTGTCATTCGACATGAGGCCAGGTCTCCGGTGTTAGCTGAATTAACATTTCGTGTTTGAGCTTCATCTTTCTAGTTATAGCTGAAGCAAAGAAAATCTCCAACTAAGGATTATCGAATTGATAGTTAACCATGTGCTTTTTTCTGGGTTATCTTACTTCCTGTTCTCTTTTGGATACCTTCTTTGTTAAGCTATATCATTATCACTTGTTTCATGGAATGGTGCAGCTCATGTTATGCGATTTTGGGTGCAAAGCAACATGGTACAATGAAGTTCATGCTTTTTTGTTTCACTCAAGTGAAATGAAAATGGCTCATGAACTGTGGATATCCGTTTCATTTCTTATTTTGACTTG</genome_strand>
        <mrna_strand>AAAGATAATATCTCCCACAGAGCGGAAAAAAAGAGAGAAGAAAATCAGAAATGCGCGCGCAAAACGGCAAGAATAAAAATATAATAATTTAAAGAGTTGTAATTTTATACTAAAAATTCTCTGCTTATTGCTGAGAACATTCTCCGACTCCGAGGTCCCATAGGGTTGTGATTATTCACTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCCCGGAAAGTTTGACTCTGAATTTTGGAGTTTCAGATCTTATTAGTAAACTGAACGTGCGAGCCCAACTCTGTACTATTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTCTTGGTTGTTCTATGTTGAATTTTGGAGTTCCGATCGGCTTACTTGTAAACTAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCTTTTGGGTGTAAGATGCTGAACCTTGGAGTTTTAGATCTGCTTTTTTGTAAACTGAACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCTTTTGGAAGTTAGACATTGAATGTTGGAGTTTCAGATCTGTAAACTGAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGTTATGCGATTTTGGGTGCAAAGCAACATGGTACAATGAAGTTCATGCTTTTTTGTTTCACTCAAGTGAAATGAAAATGGCTCATGAACTGTGGATATCCGTTTCATTTCTTATTTTGACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306328" ref_strand="+" ref_description="SGN-E306328 [cLEX-13-K4]">
      <seq>aaagataatatctcccacagagcggaaaaaaagagagaagaaaatcagaaatgcgcgcgcaaaacggcaagaataaaaatataataatttaaagagttgtaattttatactaaaaattctctgcttattgctgagaacattctccgactccgaggtcccatagggttgtgattattcacttcaggtatccccggaaagtttgactctgaattttggagtttcagatcttattagtaaactgaacgtgcgagcccaactctgtactattgcagggatttcttggttgttctatgttgaattttggagttccgatcggcttacttgtaaactagagagggatcttttgggtgtaagatgctgaaccttggagttttagatctgcttttttgtaaactgaacagggatcttttggaagttagacattgaatgttggagtttcagatctgtaaactgaacagctcatgttatgcgattttgggtgcaaagcaacatggtacaatgaagttcatgcttttttgtttcactcaagtgaaatgaaaatggctcatgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="+" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="40828" stop="53510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41128" g_stop="41311" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41312" i_stop="45369" i_length="4058">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45370" g_stop="45457" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="272" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45458" i_stop="46075" i_length="618">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.140" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46076" g_stop="46139" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="336" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46140" i_stop="48665" i_length="2526">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48666" g_stop="48730" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="401" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48731" i_stop="51697" i_length="2967">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.551" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51698" g_stop="51754" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="458" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51755" i_stop="53115" i_length="1361">
            <donor d_prob="0.802" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53116" g_stop="53210" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="553" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="+" ref_id="SGN-E306328" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41128" e_stop="41311"/>
          <exon e_start="45370" e_stop="45457"/>
          <exon e_start="46076" e_stop="46139"/>
          <exon e_start="48666" e_stop="48730"/>
          <exon e_start="51698" e_stop="51754"/>
          <exon e_start="53116" e_stop="53210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATAATATCTCCCACAGAGCGGAAAAAAAGAGAGAAGAAAATCAGAAATGCGCGCGCAAAACGGCAAGAATAAAAATATAATAATTTAAAGAGTTGTAATTTTATACTAAAAATTCTCTGCTTATTGCTGAGAACATTCTCCGACTCCGAGGTCCCATAGGGTTGTGATTATTCACTTCAGGTTTGTTCATCTTCCTTAATTTTTCAATAAGTTATTGTCGAATTCATACTCTATTGCAGCCCAAATTGTTTGTTAATTTGTGTTTACAAGTTCGAAGTGTGACCTAATTGTTCGTGTTTGAGTGTTACTTCGCTGTATTTTGCTTTGCTTTCTACTCTTATTCTTCGGGGTTGAAAGTAGTATTCTAGTACTTATATTGTAGGATATGGAGTTTAACGTGTTTATTTGACTTGCCTCCTAGAGGAAAAAATATATCTAAGTACTAGTTGAAGAAATCAATTTGATTGAAAATCATTCAAAAGATAGAATTTGATAGATTGGTCAATTTGAACTTCTTAAAGTTGTTGAAAGTTTTATAGAATGGTATCATTGGTGGAATTTTATCAAATATTCCCAATATAAGAAGAGTAAATTGGAATTAGGTCAATAGTGGTTCCTGTTGCTGATGGGAGTTGGCAGGTACCCGTGGAATTAGTTGAGGTGTGCGACAACTAGCCCACACACCACACTAATTTTAAAATATTAAAAAAATGGGATGGAGGGAGTAGCTTATATTGTGATTTAGCTTCCAAATATTTCTGTTCATTTCTTTGTGTTCATACTCTTCGCAAATTTGTGAAATTAAATGGTTTTGTTTTTTCATCACAAGTCGGGGTTCTGCAAGGTATCTCACTTTTTATGTCAACTTTTGAATTGAAAAAATAGTTATCTGCTCTTGCTTATATTACATATTTACTTGTTAGGTTTTGTATTCAAGTAGACACATTGCAATATCCTAGTGGGTTTTGTAGTGTTTACTAAGAGTTCCCACTAGCAAATGTAGAATTCATTTTCTGATGGGGACTTCTAAGTTTGATTAACATTAATATCAAATATTTCCCTAACCACTTGTTAGAAGGAAGAAAGCGTGGTTTGTGCCAGAGATATATGGCATTCCACATCAGGGGCATAAGAGCATCCAAAATGGTTATTAAAAAATCTTAAACTACTTCACTTATTGCCTGTAGCATCTTGAATTGTGTGCTTGGGTTCTCTTAATTAGCTTCAAAGCAAGGTCACATGTTCATCTTCACTGTTGGTGGTGTCCAGGGTGGAGAATTGTTTGTGAGGAGGCCAATGGGCCGAGTTTGCACCTACCTCATGGCAACGGTTTACCAGGCTGTTACAATTAGCATGTGAGCTCTCATATATGTGAACCTTTTAAGAAATAAAAATGCAATCTTACTAGAATTAATGTATTAAAAAGTACTTGTTTTTTTCCTGGATTTTACCATTTCAATTAGATGTTTAGATTCTTTCATGTGGTAACAAAATCTACATATGAAGCCTGTTGCCTCGCAGTAACTTTGATCTTCATCCCATGGCTGAATCGTGAACCCTTAAAATGGATTGTCTCTTATTTTTCTTGTGATTCGTAGTCTGATATGTTAAATTATCACTAGTTCTCCAAGTGATTAATAAGATAATATTTTAGAATACTATGTTTTATCTTTAGAGTGTGTTTGGTATGAAGGAAAACATTTTTTGGAAAATGTTTTCCAATTTTCTTATGTTTGGTTGGGGCAAAAGTTTTGGAAAATGTTTTCCAAATCAACTTATTTTCCTCAAAATTAAGGAAAATGTATTCCCTTCAAAAATTAAGGAAAACATTTTCCAAAGCTCTCCTCCAATTTCAAATTACATTTTTTTTTGGAAAACAAACATTAATTTTTTTAAAAAATATTTTCAATTTTAAAATTTTATTTTTTCACCCGATCTCTGACTACCCTCCCCTTGCCCCCCTCCCCCAACACCACCCCCTCCCCAAAAAATTAATTTTGCTTTTTCCCCCTCCCCAAAAAATTAATTTTGCTTTTTAAAAATATTTTCAACTCCAATTTTTTATTTTTAAGCTCCTACCTCCCCTCTCCCGGCCAGCCCCCCTACCCACCTATCAGCCCCCTCACCCCCACCCCCAACCCCCCAAAAAATTAATTTTATTTTTTTAAAATACTGTCAACTTCAAATTTTTATTTTTTTTACTCCTACCCCCTCCCTCTGCCCCCCCCCCTACTACCCCCACCCCCTATCATCACCACCAAAAAAAATTGTTTTTAAAAAATATTTTCAATTTCATAAATTATTTTGTATTCTAGTAAAAATAAAAGATATTCCTCAAAAATATTTTTCATTCATAAATCAAACACAAAATCATTTCCGAAAAATATTTTCTACTCACCACCAACCAAACATGAGAAAATAAGTCCAAAATCTACTTGTTTTCCAAGAAAACATTTTCTAGGAAAACATTTTCCATGGAAAACATTTTCCTTCATACCAAACACACCCTTAGTCTATAAGGTTTTGACATTTTTTTCCTTTGAATGAGTACTTGCTGCATGTATAATATCACTAGTTGTGTTTATTAGTATTTACTGTTGTTTTGTACTTCCCTAGGTTTACCTTGTACTTGGTTTCAAAAAGCTTTTGGTTTTTGTAAGCCACAGTTCTTTTCCAGAAAAAGTAATTTTTTTGAACCGGGTGTGTTTAGGGATAGTTAGTAGCTAATAGGGAATAAAAATGTGTTTTTGTTTGATTGTTCTCTTTGTATAACTTGTTTTTCTGAAAACCACTATTTAGACTCTTTCATGTGAGTCTTTGTCAAATTTATGGAATATCCCTCCTGAATTTTTGCTGCAGAAGTGGATAACATTGAGAGAAATGGTCTTATTTGTAACACTTGGTCATTTGTTTACTCTTTGCTCACTACTTGGTATTGGTTTGATTTATGCGACTTCGTTTCAATTATTCTTGATTGTGAGTTGGAAGGGACCCATCTAATCTAACATGTGCCATGTGTGATGAGACTTAATGAAAATTTCTTTGCACACCTTTGTGTAGGATTTGTTTTAATTGTTTGAAAAAAAATGCTCGTTTTAGGATACGATAATAGGTTTTCCAAGCCTACAATTCGCATGAAGTATCCCTAGTTGTCCCATTTGAGCCTTAAGGGATCTTTCCAGAAATAAAAAATTGTTTTGTTGAGGCAATTTCACCTTGTGAGTTATTTGATTGTAAATGTTATTGCTTATCTTCAACTTAGACTTCAGATGCTCCGTTTTTCATACCAGCTGATTACTTTAATATTCTTTGGTAGCTTCCCCCCTCTCCCCCCCCCCCCCCCCCCCCATTTTTTTTTAAAGATAACATCATCATTTGGTACTTTTGCTGGCTCCCATTTGGATATGGGAGATGGTTAGATACTCAGATGGGTTGCTTAAAATATGACGCCTTTGCAGCTTCCTCTGATTTGTGCTGCTCTCGTGCCTAAAGATTGTATCTGCTTTCATTGTTACTGAAGCTCGTCTCTTTACAGTCCTTTTCTATCATTCTCAACCTTTTCAGCATCTGGAATAAAAAAGCCATTGAAACTGTCTAGTGATTGGGAACTGTCAATGGAATGAGGCCAGGATTTTGTCATTAGCTGTATCAGTATTGCATATTTGAACACATAGTTTGAGTAGGTCACAGCTTAAGTAAGAAAGCTTCCACTACATTATGAATATCACATTTGTAGTTAAACACGGGCTCTCTCGTTGGGTTCTTTTATTACCAATTTTCTTTTAGCTATACCTTCCTTATCTTAGATTCTTTTCACTTGTTTTCATGAAACGGCGTAGCTCATGGTATGTGAATTGGTACAAAAGAACACGGTACAATGATGTTCATGCATCTTTAGCTCTCTTAATTGAAATGAAAATAGGTATTTGAACTATGGATACCCATTAGTTCCTCATTTTGACGTGAAAGTCTAGAGAACTCTTGCCTCAATTTTGTGAATGACCTCTGAGCCGTTGATCATCAGTGATTAAGGCAAAACACCCTTGATCCCTAATTGATGTTTTAATCCAAACTTTATGAATCTTTGATATAAAGGGAAACCCGGTACTAACTTAACTTTAAGTTTTGCCTGCTTAGTCAAATTGGAATCAGATGGCAAAAATGGGAAGCATATCTGAAATGATGGCTGATGACAGTTGAGACACTTGAACTTACCCGTTTTAGCATTTTATATTCAGGTATCCCCGGAAAGTTTGACTCTGAATTTTGGAGTTTCAGATCTTATTAGTAAACTGAACGTGCGAGCCCAACTCTGTACTATTGCAGGTATTTATTAATTATTTGCTTATACATCTAGATTTACCTTATTCAGCTTTAGGTGACTCGTGTCATTTGGTTGTCCATGAGAGTGGATAGAAAGCATTTTGCCTGGAAATATTGTTGTATGAAGACATTTGGCTGAGTGTCTTAGTTGACTTGTGATCAAAACACCTAACTTAAGGGAAACAACAAACTGCTCTTGAAGTCAATACACTAGGTGAAGTTTAGTGTAAGCTTTGACAAAGCATAATTATGTCTGGACTGTAGAAATGATGCGCCGTTGCTCAAGTAAACTGAAATAAAATGACTCATCACTAGCATTATCCAATTTAACTCCAAATGTGAGTAGGAAATCAGAGAGCTTTTTTCCAAAAAGAATGTCAAATGATGTACTGTTTGATTTTTAGTAACACCTTTCTGCTCCTCATCAAATGAATTTAAAAAATAACACCGTTCTGCTAAATAATTCTGTTATGATTGTTGATCTGTATGTCTAATATCAACAAACTTTGATGGAAAGCAAACATTTGATTTGTTTCTGAAGGGAAAATTGCAAACCCTTAAATTTTCCTTATCATAGGTGAGATAATTCTTGTGCTAATCTATCTAAGCTTTTGAATATAGGGATTTCTTGGTTGTTCTATGTTGAATTTTGGAGTTCCGATCGGCTTACTTGTAAACTAGAGAGGTTAGCACAAATCCATATACTACCAGCACTCGTGCTTTGTTATTTTTATCTTGTAGTTCTGAAAATTTAGCTTCCAGAGCATCAAATCTTGCCATTCCATTTTCTTTATTTGATAAGGATGCATCTTGGCCTAAATGTTGTTATCTGAAAAAAACATGACTTTTGGCTGATTGACTTGGCTGACCTTACATCAGAATATGTACTGAACAGGAGACTGGAAAGAGCTGCAAGTCAAGCAATATATGTGGTTTACTAAAATACACTAGAAAGAAGAATCAGTTCTAGAACTTTTTGGATTACTAAACTAATTAATTTTAACTGTCTAAGATGAATAACCATTAATCATTGGAATCCTACCGAATTCATAAATGCATAATGTGCTTACTGCAATTTCCGGAACACAAATCTCACTATTGAATATTCAGCAAAGTGTTAAATGGATATCCAACATTTGCCTAAAAATCCTTTATAACTATCAGGAGTACAGGCTTGAAAAAAGGCTCTTGAAAATTTGGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACTACTAGACCAAATGCCCAGCTGTTTGTTGGTCTCTCAGTCTAAGAAATAATTAGAAGTTCCATGTCAGTTATTCAGACCCTATACCATTTTTTGAAATGATTTTCTTGGAGGGATAAGCATTTTCTAGTCTCTAGGGACTCGGGGGATCCTTCCTTGTGTCAATCAGTGTTATGGTCCTTCACGAATTTGATTTTAGTTTTATAGTTATCTTCATTTTTACACTTGAGAGATCTGAAAAGGTTATTTTCTTCTATTCAATGTGTAAGCAGTCATAGGAGATCATTTCTTCCCTCTCCCTCCCTCCCTTTGTTAAAATGAAGTATATAGACTATAGAGAGGCATACTATGCTATTAAAGTTGCTTAAATTGTAGACATTATTGAAGTAGGTTGTATCTGGTATTCTGGTTGTATGTGAACAAACTCAACTGTAGAGGAGGAAAATGTCTCCTATGGCAATGCAGAGTCAGTTACAGATGAAGGAGCATTTGGAGAGTTAAATCAACTTTAGAGTAAATAAAACTTTAACAAAATCAAGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCTGCTTTTGTTGGTCCCCCAATCTAAATGATAGTTGGAAGTTTCATATTCAGTTGTCTGGAGTACCATCTTATGAAATGATTTATAGGAGGGATGAGAATTCTTCTGTGTCTAGGGGATCCTCCAATGTAAAAATAATGTATACAGTGAGACATAACATTGGAAGTAGTTGTAGAAATGGGGAAGTTTCCCATATCTGGTTGTAATATCTAAACGTACTCAACTGTAGAATCAGCAAGAGATGAATGAGCCCTTGGAGAGTTAATTAAGCTTCAGTAAATTAAAAAATTTATCTAAATGAAGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCATTGTTGGCATTGTCTTATTTGAGCTAGGCAAATGTATTTTCCCCCTTTGAGTTATTTGATCCCAAATGTCATTGCTCATCTGTAATGCAAGAATTCAAAGACTCCATATTTTACACCAGATGATCTTCATTTCTTGCTTAAATGTTCTTGTTGCTTAGAATATATGCCTCTGCAGTTCCTCTGATTCTCACTGCACTTGATGCCTAAGACGCTCTCAGCTTTGGTTGGTACTGTCACTTGTATATTTACAATCCTATGCTATCATATTAAACCCTCTGGTCATCTGGAATCCAAAATCCATGAGATATGTCTAGTAATTAAGAACTTCCATTGGACATGAGGCCAGGTGTCTAGCATTAGCTGGAGTAATATTACATGTTTGAGCTTCATAGATCGAGTTAAGTCGCAGCTGAAGCAAATAAAAGCTCCAGTAAGGAGTATCACATTTGTAGTTCAACATGGGCTTTTTGCTGGGTTCTCTTACTTCCAGTTCTCTTTTGGGCCTTATTTATTACTATAATATCATCATTACTTGTTTCATGGAATAGTGCAGATCATGTTAAGTAATTTTCATGATATATAATTTTTGGGTGCAAAGCAACTTGGTACAATAATGCTCCTGCTTTTTTTCTCTCTCACTGAAGTGCAATATAAATGGCTCATGACCTATGGATATCGGCTTTATTTCTTATATTGACTTGAAATTTTGAGAGCTACTGCCTTGGTTTTGCACAACATCTCTATGTCATTGATTAATGATTTCAGTTTTTACTGTTAACTTCCTTGACTCCTAAATGACCGTGTTATGGATCAAACATAATGATTATTTGATGTTACAACAAATCCATGTACTAACTTCACTTTTAAGTCTTGCCTGCTTTGTCAAATTTAAAATGGATGGCAAAAAAGCAAATCTGAAATAATGGCTTATGATAGAAGAGATACTTGAACTTGTCTGTTCGACATTTCATATTTAGGGATCTTTTGGGTGTAAGATGCTGAACCTTGGAGTTTTAGATCTGCTTTTTTGTAAACTGAACAGGCAAGCCCAACTCTGCACTCAAGTAGTCATGATGGATTGATCTGTATGTTATAGATCTAGATTTACCTTATGCAGCTTCAAGTGATTCATGTCATTTGGTTATCCATTAACATGAATTAAAAGAATCTTTACCTGCAAATATTTTTGTATGAAGACTTGAGATCAGCTTGCCAAAATGGGAACAATAAAGAGCTCTTGAAGTCAAGCATTAGGTAAGGTCTGGCATAAGCATTGACAAAGCAAAGTTAGGTCTTGACTGTACAAATGGTCCTACATCTTGATATAATAATAAACTAAAAAATTTATTGATTCCCCTGTCACATTAAACTGTCAGCATGTGACCCAGTGTGAATTCTATTTTTTGAATCTTAATTACATAAATGGCTGATGAACTTGCTGGAATTTTCAGAACATCAATCTGAATGCTTTCTTTTAACAAAATACTAAGAATCTTGCAATCCCTGAATCATACAACTAGATCAAATACCCAGTTATTTATGTTCCTTATAGACAATGTTGCAATAAGATTAACACTAAGTCATCCAAGATGAGAGTGTGTGCTAGTTGAAATTTTTTGTTTCCATTGTTAACAAGGTGGAGGATAAATTATAGCATTGGCATGATAATTTTGAGACTGCAGACTTTGATGTGTATTTTCTTGTAAGATCTCTGGCCAATCACACTAGGTTATCCATCAGTGTCCTGCTTAATTTTAATATATCAATTAGAAAAAAGAGTGAAGGAGCAGTTGTACAAGTAAAATGGCCTGCTTAATTTTAATATATCAATTAGAAAATAGAGTGAAGGAGCAGATATACAAGTAAAATGAAGTAAAAGAGTTACTTTAGCTGGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCTGCTGTTTGTTGGTCCCTCAATCTAAATAATAGCTGGAAGTTTCATGTCTCTTGTAAGCTTGTGCCATTTTTTGAAATGATTTTCTTGGAGGGATGAGCATTCTCCAGTGTCTGAGGGATCCTTCCTGGGCTCAATCGGTGTTATGATCTTTTACAAATTTGTTTTTAGTACTATAAAGATCTTCATTCTCACATAAGAGATCTAAAAAGGTCATTTTCTTTCATCCAAATTTTAAGTGTTCATAGTAGACCATATCCTCCCCCTTCCTCCCTCCCATTGTTTTAGTACTATAAAGATCTTCATTCTTACATAAGAGATCTGAAAAGGTCATTTTCTTTCATCCAAATTTTAAGTGTTCATAGTAGAACATATCCTCCCTCTTCCTCCCTCCCATTGTTAAAATAATATATGTAGAGAGGGGCATACTATGCTATTAAAGGTGCTGTTATTGTAGACATTATTAAAGTTGGTTGTATCTGAACAAACTCAACTATAGAGGAGGAAGTATTCTCCTACAGCGAATGTAGAGTCAGTTACAGATGAAGGAGTATTTGGAGAGTCAAATCAACTTAAGAGTAAATAAAAACTTAAGCAAAATAAAGGGGCATTCCGGGAATCGAACTCGGGACCTCTCGCACCCGAAGCGAGAATCATACCACTAGACCAAATGCCCTGTTTTGTTGGTCCCCCAGTCTAAATGATAGCTGGAAGTTTCATCTCCAGCTGTCTTGAGCTTATACCATTTTATGAAATAATTTTCTAGGAGGATGAAATTCTCCTGTGCCTAAGGTCTCCTCCAATGTTAAAATAGTGTATACAAAGACACATAACATCACAATTAAAGGTGTTTTAGTTGTAGAAAATATCTTAACATACTCAACTGTAGAATCAGCTAGTGATGAAGGAGTTGGTGAGTTAAATTAACTTAGAGTAAATTAAAACTTTAGCAAAACCAAGGGGCATTCCGAGAATCGAACTTGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCATTGTTGACATTGTCTTATTTGAATTTTAGTCAAATGTATTTTACCTCTGTAAGCTATTTGATCACAATTGTCATTGCTTACTGTAATATAGAATTCAAATAATCCTTATTTTACACCATATGATCATCATTTGCTTGCTTAAATTTTCTTGAGTACTTTGCTTATTAGGATGTGAGGGTTATATAGAAGGTTGCTTAAAATAATATGCCTCTGCAGTTCCTCTGATTACTCCTGTTGATGCCTAAAGATGTTATCAGCTTTGGTTGCTTCTATCACTTGTATATTCACAATCCTATGCAATCATACTCAACCCTTTGGTCATCTGGAAACCAAAACCCGTGAGATCTGTGTAGTGATTAAGAACAGTCATTGGACATGAGGCCAGGTCTCCAGTGTTACCTGAATTAAAATTTCATGCTTGAGCTTCATCGTTCAAGTTACAGCTAAAGAAAATAAAATATCCTCCAAGGAGTATCTAGTTGATAGTTAACCATGGGTTTAAAGTTACCAGTTTCAAAAAGAATAGTTAACCATGGGTCTTTTTCTGGGTTCTCTTACTTCCAGTTCTCTTTTGAATACCTTCTTTATAAGCTATATTAGTATTACTTGTTTCGTGGAATGGTGCAGCTCATGTTATGCGATTTTGGGTGCAAATAATGAAGTTCATGCTTCTTTGTTTCACTAAAGTGTAATGAAAATGGTTCATGAACTATGGATATCCGTTCCGTTCCTTATTTCGACTTGAATTTAGAGAACTTCCTTTATTTTTTTTGTGGAAGATTCGTGTTGTTGATTAATGATCTCAGTTTTATTGTTAACTTCCTTGACTCGTAAATGATCTTGTTATAGATCAAACATAATGATTCTTCGATGTTACGACAAATCCATGTACCAAATTGACTTATAAGTTTTGCCTGCTTTATCAAATTGAAAATGGATGGCAAAAAAGCATATCTGAAATGATGGCTTGTGATATTTGAGATACTCCAACTAATCTGTCCAACAATTATTTAGGGATCTTTTGGAAGTTAGATATTGAATGTTGGAGTTTCAGATCTGTAAACTGAACAGGCGAGCCCCCAACTCTGCACTATTGCAAGTATTCATGATGTATTAAGTTTTAGCTTATAGATCTAGATTTACCTTATTCAGCTTCAAGTGCTCATGCCATTTGGTTGTTCATTAACATGAATAAATATAATCTTTATATGCGATTTTTGTTTTATGAAGAAAGTCGATTGAGTTTTATAGTTGACTGGAGATCAACTTACAAAAATGGAAACAATGAAGAGCTCTTGAAGTCGAGCATTAGGTAACATTTGGTACAGATTATTGATTCCCTTGTGGCATTAAATTGTCAGCATGTGACCAAGTGTGAATTCTTTTCTTTTGAATCCTAGTTACATAAATGACCCTGCTTAATTTGCATGTACTATCACTTAGAAAATAGAGTGAAGGAGCAGAGTTGCAAGTAAAATGAATTAAAAAGTTGTATTAGATGGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCAGCTCTTGTTGGTCCCTCAGTGGTAATAATATTTTGAAGTTGATATTGGTTGTCTGGAGCTTGTACCATTGTATGCAATAATTTTCTAGGTGAAATAAGCATTCTCCATTGTTTGAGCCTTTGAAAAGTTAAATCATTTTAGAGTGAATAAAAACTTATATAAAATTAAGGGGCATTCCGAGAATTAAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCATCGATGACATTGTCTTCTTTGAATTTTAGTCAAATGTATTTTAGCTTTTCAGCTATTTGATCACACAACTGTATTGCTTACTGTAATATAGAATTCAAATAATCTGTATTTTACACCATATGATCTTCATTTTCTTGCTTAAATGTTCTTGAGTACTTAATTATCAAAAAAATGTTCTTTGAGTACATGTTATTTGGATGTGAGGTGTATATAGAAGGTTGCTTAAAATAATATGCCTCTGCAGTTCCTCAGATTACTTCTCTCAATGCCTATAGATGCTATCAGCTTTGGTTGTTACTATCACTTCTATATTTACAATCCTATGCAAGCATACTCAACCCTTTGGTCGTCTGGAATGCAAAAGACGTGAGATCTGTGTAGTGATTAAGAACTGTCATTCGACATGAGGCCAGGTCTCCGGTGTTAGCTGAATTAACATTTCGTGTTTGAGCTTCATCTTTCTAGTTATAGCTGAAGCAAAGAAAATCTCCAACTAAGGATTATCGAATTGATAGTTAACCATGTGCTTTTTTCTGGGTTATCTTACTTCCTGTTCTCTTTTGGATACCTTCTTTGTTAAGCTATATCATTATCACTTGTTTCATGGAATGGTGCAGCTCATGTTATGCGATTTTGGGTGCAAAGCAACATGGTACAATGAAGTTCATGCTTTTTTGTTTCACTCAAGTGAAATGAAAATGGCTCATGAACT</genome_strand>
        <mrna_strand>AAAGATAATATCTCCCACAGAGCGGAAAAAAAGAGAGAAGAAAATCAGAAATGCGCGCGCAAAACGGCAAGAATAAAAATATAATAATTTAAAGAGTTGTAATTTTATACTAAAAATTCTCTGCTTATTGCTGAGAACATTCTCCGACTCCGAGGTCCCATAGGGTTGTGATTATTCACTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCCCGGAAAGTTTGACTCTGAATTTTGGAGTTTCAGATCTTATTAGTAAACTGAACGTGCGAGCCCAACTCTGTACTATTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTCTTGGTTGTTCTATGTTGAATTTTGGAGTTCCGATCGGCTTACTTGTAAACTAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCTTTTGGGTGTAAGATGCTGAACCTTGGAGTTTTAGATCTGCTTTTTTGTAAACTGAACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCTTTTGGAAGTTAGACATTGAATGTTGGAGTTTCAGATCTGTAAACTGAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGTTATGCGATTTTGGGTGCAAAGCAACATGGTACAATGAAGTTCATGCTTTTTTGTTTCACTCAAGTGAAATGAAAATGGCTCATGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347091" ref_strand="+" ref_description="SGN-E347091 [cTOF-25-H20]">
      <seq>ttgcttaaaataatatgcctctgcagttcctctgattactcctgttgatgcctaaagatgttatcagctttggttgcttctatcacttgtatattcacaatcctatgcaatcatactcaaccctttggtcatctggaaaccaaaacccgtgagatctgtgtagtgattaagaacagtcattggacatgaggccaggtctccagtgttacctgaattaaaatttcatgcttgagcttcatcgttcaagttacagctaaagaaaataaaatatcctccaaggagtatctagttgatagttaaccatgggtttaaagttaccagtttcaaaaagaatagttaaccatgggtctttttctgggttctcttacttccagttctcttttgaataccttctttataagctatattagtattacttgtttcgtggaatggtgcagctcatgttatgcgattttgggtgcaaataatgaagttcatgcttctttgtttcactaaaaaaaaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="+" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="50574" stop="51669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50874" g_stop="51369" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="497" polyA_stop="514"/>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="+" ref_id="SGN-E347091" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50874" e_stop="51369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTAAAATAATATGCCTCTGCAGTTCCTCTGATTACTCCTGTTGATGCCTAAAGATGTTATCAGCTTTGGTTGCTTCTATCACTTGTATATTCACAATCCTATGCAATCATACTCAACCCTTTGGTCATCTGGAAACCAAAACCCGTGAGATCTGTGTAGTGATTAAGAACAGTCATTGGACATGAGGCCAGGTCTCCAGTGTTACCTGAATTAAAATTTCATGCTTGAGCTTCATCGTTCAAGTTACAGCTAAAGAAAATAAAATATCCTCCAAGGAGTATCTAGTTGATAGTTAACCATGGGTTTAAAGTTACCAGTTTCAAAAAGAATAGTTAACCATGGGTCTTTTTCTGGGTTCTCTTACTTCCAGTTCTCTTTTGAATACCTTCTTTATAAGCTATATTAGTATTACTTGTTTCGTGGAATGGTGCAGCTCATGTTATGCGATTTTGGGTGCAAATAATGAAGTTCATGCTTCTTTGTTTCACTAAA</genome_strand>
        <mrna_strand>TTGCTTAAAATAATATGCCTCTGCAGTTCCTCTGATTACTCCTGTTGATGCCTAAAGATGTTATCAGCTTTGGTTGCTTCTATCACTTGTATATTCACAATCCTATGCAATCATACTCAACCCTTTGGTCATCTGGAAACCAAAACCCGTGAGATCTGTGTAGTGATTAAGAACAGTCATTGGACATGAGGCCAGGTCTCCAGTGTTACCTGAATTAAAATTTCATGCTTGAGCTTCATCGTTCAAGTTACAGCTAAAGAAAATAAAATATCCTCCAAGGAGTATCTAGTTGATAGTTAACCATGGGTTTAAAGTTACCAGTTTCAAAAAGAATAGTTAACCATGGGTCTTTTTCTGGGTTCTCTTACTTCCAGTTCTCTTTTGAATACCTTCTTTATAAGCTATATTAGTATTACTTGTTTCGTGGAATGGTGCAGCTCATGTTATGCGATTTTGGGTGCAAATAATGAAGTTCATGCTTCTTTGTTTCACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722451" ref_strand="+" ref_description="SGN-E722451 [FC17BC06]">
      <seq>tggggaaaaaaaattaccaatcagttgttgggtttctagggttctcattcgaattggagccttcaagccatggatggaaatttgaacgataatgcatctttgcgtgctcggatcaaagagttggaacgcgagcgtgatgaattgcataaagatattgaacagctatgcatgcaacaaagtggacctagctatattgggctgcctactcatgtgcctcttcataggatagctgggttggagcaggagactgaaaacttgaaaaagaaactagctgcttgcacaacagaaaatcagaatcttcaagaagagctttcaaaagcttatcacatcaaaggtcaactggctagtctacacagtgcagaagtttccaagaatattgaagcagaaaagcagctcaagttttttcaaggctgtgttgctgctgcattttctgagcgggaccatgctgtaatggaggctgaaaaggctaaggaaaaggaggagcttatttcaagaggatttcatgaacttcagcagaggattgaagagctgcactgtgaattacttgaagagaaaatattgacggctactttgcaaagtgagatggacggggaaaagaggttggatgaggctttcaaggaggttgttcacaagttctatgagatcagacagcagtcactggaggatattgaagaagatgtgtcctgggaagacaaatgtgggtgcctcctgcatgatttgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="68101" stop="63644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67803" g_stop="67737" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67736" i_stop="67548" i_length="189">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67547" g_stop="67485" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="130" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67484" i_stop="66628" i_length="857">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66627" g_stop="66534" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="224" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66533" i_stop="66370" i_length="164">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66369" g_stop="66261" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="333" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66260" i_stop="66170" i_length="91">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66169" g_stop="66131" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="372" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66130" i_stop="65814" i_length="317">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65813" g_stop="65730" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="456" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65729" i_stop="65391" i_length="339">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65390" g_stop="65329" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="518" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65328" i_stop="64364" i_length="965">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64363" g_stop="64261" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="621" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64260" i_stop="64046" i_length="215">
            <donor d_prob="0.894" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64045" g_stop="63944" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="723" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E722451" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67803" e_stop="67737"/>
          <exon e_start="67547" e_stop="67485"/>
          <exon e_start="66627" e_stop="66534"/>
          <exon e_start="66369" e_stop="66261"/>
          <exon e_start="66169" e_stop="66131"/>
          <exon e_start="65813" e_stop="65730"/>
          <exon e_start="65390" e_stop="65329"/>
          <exon e_start="64363" e_stop="64261"/>
          <exon e_start="64045" e_stop="63944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGAAAAAAAATTAAGAATCAGTTGTTGGGTTTCTAGGGTTCTCATTCGAATTGGAGCCTTCAAGGTTACTTTCTTGACCCTTTGATTTAATCTTTCCTCTAATTTATCAAAATCTCGGTTTCTTAATTCTTTGTCCATTTCGATATAGGATGAACTATTTGTTTATCACAACTTTCCGACGTAATTGTAGTAGGAGAATGAATTATGATTCATACGTTCTTGTGGAAATCAAGATTTTCCGTTTTTTTTTCAGCCATGGATGGAAATTTGAACGATAATGCATCTTTGCGTGCTCGGATCAAAGAGTTGGAACGCGGTATGCTTACATGTTATGGTTTTTGTAATTCTTGAATTTGTATGTGTGTTATGGCCAGATTGGACTAACACAGTGTGGAATGTTCTTTCTTGATGAATATATAAAATTTCATTACTAAATACCAACTCTATAAGTTGAGAAAAGAGTAGAAGTTGTGTTCTTGATTCGTCTGTCATTCTTGTCCAACTATCTATACAGCAAAGTAGTTTCTCCTGACAATGAAGATCGAATATAGGTTTAAAGGTGAATCATGCATGGGGATACTAGTTGTCTATGCGATTAGTAAGGACATTTTTTCCCTATGGTTTTCTTAATGACATGAGGGATTCGTCAAATCTTTGAATGTAATCAGTTTAGATAAGGTGAATAGGTCCTCATAGGCATGAAGCAACTGGCTGTTGTGGATGTACTATATTATTAGTATGACTCAGACACTTCAGATAAGCCTGAACAGTTCAAGATTCAATAGGTTACCGACTTCTGTTGAGTAATTGAGTGACCAAAAGAAGGGTTAAATTCATCCCCTCCTCGAAAATAGAGAGGATTTAGAATTCCGCTAACAAGTTCTCAACAGACATTAATGTGATTGCTACTTTTGATTACACGATACGAGTTTAACATTTTTATTGTTGAGCTGGTTTGGTGGACTCCAGAATGGTTATGTAGTGAAGAATTAATTAAATATGATGTTATCTACTCGCACTTCTTCATTCATGCTAATTTCTTTCGCGTTGTTATCCAAGTATGTTTTAAATGTGTTCTGAACCTTCCTCTTTTCTTTGCAGTGGTGTAGTCTGTAACTGATTAGTAAGTGAGAAAATTGTGTGCAATCTAATGTATTGTGGTTTCTTGTTTAGAGCGTGATGAATTGCATAAAGATATTGAACAGCTATGCATGCAACAAAGTGGACCTAGCTATATTGGGCTGCCTACTCATGTGCCTCTTCATAGGTTCAACTTTCTTATTCTTTTTTTTTTGGGAAGTTGGGGGGAAGCTAGTCATTTGTTTGTTTAGGTTGTTTTCCTTGTTTATGTTCTCTCTCTTATTCTTGTGTGGAATTGAAGAAGGGCATTTTGTCATGACATTTAAAAATGGATTTTTTCTAACCAATTAGGATAGCTGGGTTGGAGCAGGAGACTGAAAACTTGAAAAAGAAACTAGCTGCTTGCACAAGAGAAAATCAGAATCTTCAAGAAGAGCTTTCAGAAGCTTATCACATCAAAGTAAGGTTTACAACTACTCTTTTATGTCATTGCAGAACCTCTATGCTATTGATCTTACAGATGCACTTTTTTCTCTTCTTCACTTTGTTAGGGTCAACTGGCTAGTCTACACAGTGCAGAAGTTTCCAAGGTCTTCTCTTTGCTCTTCTCCCTACCCTATACCCCGGAAAGGAGAGAGAAAGCATAAACATTAGGGGGTCTGGAGGTGCATCATGTGCTTGTTAATATATTGAGTGTGTTACTATTGAAGCTATTTTGACTGTTAAAATGTTCCTGTTTGGCGGTTGTGACTCAAATTTCATTATAATTCTGGTTCTTGGAATGCTAAGAGCTTGCAACTCAGATGTCTTAGACATTCATTTTAGTTGGATCTAGATCAATTAAATATCAGGAAGTGCGTCATAGTCCAGTATATTATAACTTACTCCGTTTTCTATTTTACTCCAGAATATTGAAGCAGAAAAGCAGCTCAAGTTTTTTCAAGGCTGTGTTGCTGCTGCATTTTCTGAGCGGGACCATGCTGTAATGGAGGTTGTCAAGATTTCTTTTAATTCCATCCTGAACCCCCCCCCCCCCCTTGCTGCACTCAAAAAATAAAAATAAAAAAGGGGGAATTGGAAGGGAGAGAAAAGACGGTGTGGTCAACACCCTTTACATATCTATTACTGCCTATCACTGTTGAAGAATCTTGATTTAAATGTTCTGGGAAAACCAGATTTTCTCAATTGATGCATAGACTGGTGTTTAATTTCAACTACTGTTTAAAATTCACTATTAAAGAACTTGTGAGCATGAGATTACATGTTCAGTTCATCCTTCACATAACTAATTCTTGGAGGCTTTTTTAAACATTCTCTATAAATGTTGCAGGCTGAAAAGGCTAAGGAAAAGGAGGAGCTTATTTCAAGAGGATTTCATGAACTTCAGCAGAGGTTTGATTGAATTTTTACATGTTAACAGGCATTAGATTTTGTCTTGCTCCTACTTCTAATGACATATTTCTCCTGTGATAAATTAAGTATTACAATCATAAGCACCAAAGTCGCACTTGAAAATATCTATTCTAAGCCCTAGTGTCCCATAAAATATGTACTTCTAATGTTTCTCTTCTAAATAACTTCCATGCAGTCAAATAGTTTACCTCTCATTTCACTCCAGGGAACCGCCGATTGCATTAGGGGTCTTATCTTCAGAAAACCTTTTTGGTTATAATTAATAGGCAAGCTTCGTCACCTTACCTTTTATAACAGCCAAAGGAAAGCACAAGAAGGCTCATAATAGTTGTGATAGCACAAAGTAACATTCTAAGGTTTTACCACATAAGTCCATATTGGCTGTGCCGCTGCAGATTAGATTCGACAAAGTATAATTAAAAAAAATGGATGCTGGTGTTTTTCACCTTCTACTGTAGTAGAGAAGCAATGGATTTTAGAACAGTGGAGTTAGCTTTTAATTCAGTGATTTAATTTAGTGGTGAGTAGGCTTTGGGTGTTCAAGTGGTGTATTCCCTAATTTCATGATTTTGGAACTCTTGCTCTTCTTTGATTCTTGCATTTGCCCACTCCTTCATGGGCAATTGAGTGCAATGGAAGTAACTTCTACAATGATCTGAATAGTCAATATTTTTAAGAAGCAACTTCATTTGAGTTGGAAATTTTCATGATATGTTGATATCTTTATCCATAAAAATTGTGATTTGGTGTTTAAGCTATTTAGAATTCTAAACTCTGCAGAACCTGACTAAAAGAGGTGAATAGCCTTCATATTTATGAAGATGGATATGTTCAACCCATAGTATCCACATAATTCCACTGCAGTATACAAACCATCTAAAAACAATTCTTGGAATATATGCAGTGTTACATAATATTGCCCTTATGTTCCATCTCTGATGCAGGATTGAAGAGCTGCACTGTGAATTACTTGAAGAGAAAATATTGACGGCTACTTTGCAGAGTGAGATGGACGGGGAAGAGAGGTTGGATGAGGCTTTCAAGGAGGTACTTAGTTCTGATGCCCTCCCTGTGAATCCATATTCATAATTGTTACAGAGCTAAAATATATAACAAAATTCTTTCATCTATACATGTGTAACATTCCATTTATGCAATTTTTGGATCAAGGAAGCTCTCAAAGAAATAAGAAAGAAACTATGTATTATATTCCTTCATTACTGATAAATATCCACCCTTGAAGATGTTGTTTTGTACAACAGGTTGTTCACAAGTTCTATGAGATCAGACAGCAGTCACTGGAGGATATTGAAGAAGATGTGTCCTGGGAAGACAAATGTGGGTGCCTCCTGCATGATTTGTCT</genome_strand>
        <mrna_strand>TGGGGAAAAAAAATTACCAATCAGTTGTTGGGTTTCTAGGGTTCTCATTCGAATTGGAGCCTTCAAG.............................................................................................................................................................................................CCATGGATGGAAATTTGAACGATAATGCATCTTTGCGTGCTCGGATCAAAGAGTTGGAACGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGATGAATTGCATAAAGATATTGAACAGCTATGCATGCAACAAAGTGGACCTAGCTATATTGGGCTGCCTACTCATGTGCCTCTTCATAG....................................................................................................................................................................GATAGCTGGGTTGGAGCAGGAGACTGAAAACTTGAAAAAGAAACTAGCTGCTTGCACAACAGAAAATCAGAATCTTCAAGAAGAGCTTTCAAAAGCTTATCACATCAAA...........................................................................................GGTCAACTGGCTAGTCTACACAGTGCAGAAGTTTCCAAG.............................................................................................................................................................................................................................................................................................................................AATATTGAAGCAGAAAAGCAGCTCAAGTTTTTTCAAGGCTGTGTTGCTGCTGCATTTTCTGAGCGGGACCATGCTGTAATGGAG...................................................................................................................................................................................................................................................................................................................................................GCTGAAAAGGCTAAGGAAAAGGAGGAGCTTATTTCAAGAGGATTTCATGAACTTCAGCAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAAGAGCTGCACTGTGAATTACTTGAAGAGAAAATATTGACGGCTACTTTGCAAAGTGAGATGGACGGGGAAAAGAGGTTGGATGAGGCTTTCAAGGAG.......................................................................................................................................................................................................................GTTGTTCACAAGTTCTATGAGATCAGACAGCAGTCACTGGAGGATATTGAAGAAGATGTGTCCTGGGAAGACAAATGTGGGTGCCTCCTGCATGATTTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240018" ref_strand="+" ref_description="SGN-E240018 [cLED-29-N16]">
      <seq>aggctgaaaaggctaaggaaaaggaggagcttatttcaagaggatttcatgaacttcagcagaggattgaagagctgcactgtgaattacttgaagagaaaatattgacggctactttgcagagtgagatggacggggaagagaggttggatgaggctttcaaggaggttgttcacaagttctatgagatcagacagcagtcactggaggatattgaagaagatgtgtcctggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="65692" stop="63678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65392" g_stop="65329" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65328" i_stop="64364" i_length="965">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64363" g_stop="64261" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="167" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64260" i_stop="64046" i_length="215">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64045" g_stop="63978" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="235" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E240018" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65392" e_stop="65329"/>
          <exon e_start="64363" e_stop="64261"/>
          <exon e_start="64045" e_stop="63978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTGAAAAGGCTAAGGAAAAGGAGGAGCTTATTTCAAGAGGATTTCATGAACTTCAGCAGAGGTTTGATTGAATTTTTACATGTTAACAGGCATTAGATTTTGTCTTGCTCCTACTTCTAATGACATATTTCTCCTGTGATAAATTAAGTATTACAATCATAAGCACCAAAGTCGCACTTGAAAATATCTATTCTAAGCCCTAGTGTCCCATAAAATATGTACTTCTAATGTTTCTCTTCTAAATAACTTCCATGCAGTCAAATAGTTTACCTCTCATTTCACTCCAGGGAACCGCCGATTGCATTAGGGGTCTTATCTTCAGAAAACCTTTTTGGTTATAATTAATAGGCAAGCTTCGTCACCTTACCTTTTATAACAGCCAAAGGAAAGCACAAGAAGGCTCATAATAGTTGTGATAGCACAAAGTAACATTCTAAGGTTTTACCACATAAGTCCATATTGGCTGTGCCGCTGCAGATTAGATTCGACAAAGTATAATTAAAAAAAATGGATGCTGGTGTTTTTCACCTTCTACTGTAGTAGAGAAGCAATGGATTTTAGAACAGTGGAGTTAGCTTTTAATTCAGTGATTTAATTTAGTGGTGAGTAGGCTTTGGGTGTTCAAGTGGTGTATTCCCTAATTTCATGATTTTGGAACTCTTGCTCTTCTTTGATTCTTGCATTTGCCCACTCCTTCATGGGCAATTGAGTGCAATGGAAGTAACTTCTACAATGATCTGAATAGTCAATATTTTTAAGAAGCAACTTCATTTGAGTTGGAAATTTTCATGATATGTTGATATCTTTATCCATAAAAATTGTGATTTGGTGTTTAAGCTATTTAGAATTCTAAACTCTGCAGAACCTGACTAAAAGAGGTGAATAGCCTTCATATTTATGAAGATGGATATGTTCAACCCATAGTATCCACATAATTCCACTGCAGTATACAAACCATCTAAAAACAATTCTTGGAATATATGCAGTGTTACATAATATTGCCCTTATGTTCCATCTCTGATGCAGGATTGAAGAGCTGCACTGTGAATTACTTGAAGAGAAAATATTGACGGCTACTTTGCAGAGTGAGATGGACGGGGAAGAGAGGTTGGATGAGGCTTTCAAGGAGGTACTTAGTTCTGATGCCCTCCCTGTGAATCCATATTCATAATTGTTACAGAGCTAAAATATATAACAAAATTCTTTCATCTATACATGTGTAACATTCCATTTATGCAATTTTTGGATCAAGGAAGCTCTCAAAGAAATAAGAAAGAAACTATGTATTATATTCCTTCATTACTGATAAATATCCACCCTTGAAGATGTTGTTTTGTACAACAGGTTGTTCACAAGTTCTATGAGATCAGACAGCAGTCACTGGAGGATATTGAAGAAGATGTGTCCTGGGA</genome_strand>
        <mrna_strand>AGGCTGAAAAGGCTAAGGAAAAGGAGGAGCTTATTTCAAGAGGATTTCATGAACTTCAGCAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAAGAGCTGCACTGTGAATTACTTGAAGAGAAAATATTGACGGCTACTTTGCAGAGTGAGATGGACGGGGAAGAGAGGTTGGATGAGGCTTTCAAGGAG.......................................................................................................................................................................................................................GTTGTTCACAAGTTCTATGAGATCAGACAGCAGTCACTGGAGGATATTGAAGAAGATGTGTCCTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700926" ref_strand="+" ref_description="SGN-E700926 [FA14CC01]">
      <seq>acgaataagctgctcttaaagctggggtccgtaagcatggaccaggcaaatggcggacgatcctcaaggacccagtgtttagcggagtgttgtactcgcgttcaaatgtagatctaaaggacaagtggaggaacatgagtgtgatggccaacggttgtggttctagagagaaagcaaggttggctctcaaaagaatgaatcaagcccgtaaacaggatgagaggtctttatctgtctccactgaggctataagtgacgaggaaatgactgaagcaaggctagctactacttctagtgattctctacagatgcgtgggtcaaaaagatctatcataagattggataatcttataatggaggctataagcaacttgaaggagccgggtggttccaacaagactactatagcaacatacatagaggatcaatattgggcacctacaaactttaaaaggctactttcagcgaaactgaagtatttaactgcaactaggagacttgtcaagatgaagcgaaagtatataatagcaccaacactggtattatctgacagaagaagaattccttccgttcctctcttggaaagcagccagaggatctcctcccgggttgatccggatgatataaacacacttactaaggctcaagtagattttgagttaactaagatgaggagtatgacacctcaagaggcagcagtagctgctgcacgagctgttgcagaagcagaagtagccatagcagaagctgaggatgctgccagagaggctgatgctgctgaagctgatgccgaagctgcacaagcctttgcagaagctgcaatgaaagcactagaagggagaagcatcccnaggatgatgatccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="72284" stop="69526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71984" g_stop="71866" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71865" i_stop="71709" i_length="157">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71708" g_stop="71491" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="337" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71490" i_stop="71182" i_length="309">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71181" g_stop="71097" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="422" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71096" i_stop="70506" i_length="591">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70505" g_stop="70422" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="506" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70421" i_stop="70181" i_length="241">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70180" g_stop="69830" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="857" r_length="351" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E700926" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71984" e_stop="71866"/>
          <exon e_start="71708" e_stop="71491"/>
          <exon e_start="71181" e_stop="71097"/>
          <exon e_start="70505" e_stop="70422"/>
          <exon e_start="70180" e_stop="69830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAGAAGCTGCTCTTAAAGCTGGGGTCCGTAAGCATGGACCAGGCAAATGGCGGACGATCCTCAAGGACCCAGTGTTTAGCGGAGTGTTGTACTCGCGTTCAAATGTAGATCTAAAGGTAGAATTTCCCTTTTTCCCATTTCTCTTAGGATAAATTTCTCTTTTGTTGAGAGGAAGCTTTGGTGTCATTCAAATTGATGAAGGTCACAATAACTTTTTTTTTCCTCTTAGCTATGTATTTATGCATGATATGTTAATTTGTCTTTGTTGTTCAGGACAAGTGGAGGAACATGAGTGTGATGGCCAACGGTTGTGGTTCTAGAGAGAAAGCAAGGTTGGCTCTCAAAAGAATGAATCAAGCCCGTAAACAGGATGAGAGGTCTTTATCTGTCTCCACTGAGGCTATAAGTGACGAGGAAATGACTGAAGCAAGGCTAGCTACTACTTCTAGTGATTCTCTACAGATGCGTGGGTCAAAAAGATCTATCATAAGGTTAAACCTTGCTCATTACTTTCTACAACATGACTCAAGTTGTAGCCTTGTACATTTGCTTGCGCTCATGGATTTAGTTAAATGATGGCTTCTGCATGATCTCATACTTCGATAGTTCTAATTATTTTCACATTCTACACATGTTCTTTCCAAGTGATCATTCTTGTTTGATTTTTAGCATTCTGATGATGGTAGATGGATAAAAGTTGTCCTACCCTTATCATAAGTTTGTTATGTTCCAGTTTTTGGTCTTACTTTTTGCTGGAAGGAAGACTATCTCTAAGTGTTGCTGCTTTACTACTATTATAGATTGGATAATCTTATAATGGAGGCTATAAGCAACTTGAAGGAGCCGGGTGGTTCCAACAAGACTACTATAGCAACATACATAGAGGTACTCATCTTCTTGTTGAGCTTAATGTCCGAAAAATAAAACAATTTAGAGCAGTACTGCTTAGTTAAATTGCCAATATTCTTTCTTAGGGCCTCTAACACATTTTGGAATTTTGAAGTCTTGCTTGTTGTGCCATCAATAACATTCTGAATCGTGTTTGCTCTTGGTGCTTCTTGCTTATTCAAGTATGAGCTCTTCTGGAACTCATTTATTATGGTTTTTAGTTCTTTCCTTGTACAGTTGTTTATGCTTTAATGTGTGACGGGACACAAGCTTTTAAGCATTTGGTGTTCACAACAGTAGATCAACTGCATAAGATTGTAGGAATCTAATTAGCTTCCTTTCAGTATAAACTGAATGCTACCTTCTATGATTGTAATATTAATATGATGGTGCTTTATTGACTATTTTTTCCTCTGTGCTTGATCTTAGTTCTCTATATTAAGATATGGTTTCGAAAGTAAGGTGCCATGTGATAAAACTTTAGATAATGCATGAGGTCAAGATTCATCGAATTTGCATTCCTGGCTAAGTTATAAATTATGGCTACATATATCAGTCTATTATACTCAATACTTTTATATCTTGTAGGATCAATATTGGGCACCTACAAACTTTAAAAGGCTACTTTCAGCGAAACTGAAGTATTTAACTGCAACTAGGAGACTTGTCAAGGTGATATTCAGTTTTGGGATTCATACTTCATGTGTTGCTTATCTTGCCCTTAGCTTTGAGTGTGAAGCCAATATGAACTGGCAGATCCAAATTCATGAATGATGGCCAGTAGTTAGATTCATGCTGATTATGATATTGAGGAGTCTTTTTCTTCTGCAGATGAAAAAGAATATTATGAATGATGGTCAGTAGTTAGATTTTATGCTGATTATCATGTGAAGGATGCCGTTTTCTTTTGCAGATGAAGCGAAAGTATATAATAGCACCAACACTGGTATTATCTGACAGAAGAAGAATTCCTTCCGTTCCTCTCTTGGAAAGCAGCCAGAGGATCTCCTCCCGGGTTGATCCGGATGATATAAACACACTTACTAAGGCTCAAGTAGATTTTGAGTTAACTAAGATGAGGAGTATGACACCTCAAGAGGCAGCAGTAGCTGCTGCACGAGCTGTTGCAGAAGCAGAAGTAGCCATAGCAGAAGCTGAGGATGCTGCCAGAGAGGCTGATGCTGCTGAAGCTGATGCCGAAGCTGCACAAGCCTTTGCAGAAGCTGCAATGAAAGCACTAGAAGGGAGAAGCATCCCAAGGATG</genome_strand>
        <mrna_strand>ACGAATAAGCTGCTCTTAAAGCTGGGGTCCGTAAGCATGGACCAGGCAAATGGCGGACGATCCTCAAGGACCCAGTGTTTAGCGGAGTGTTGTACTCGCGTTCAAATGTAGATCTAAAG.............................................................................................................................................................GACAAGTGGAGGAACATGAGTGTGATGGCCAACGGTTGTGGTTCTAGAGAGAAAGCAAGGTTGGCTCTCAAAAGAATGAATCAAGCCCGTAAACAGGATGAGAGGTCTTTATCTGTCTCCACTGAGGCTATAAGTGACGAGGAAATGACTGAAGCAAGGCTAGCTACTACTTCTAGTGATTCTCTACAGATGCGTGGGTCAAAAAGATCTATCATAAG.....................................................................................................................................................................................................................................................................................................................ATTGGATAATCTTATAATGGAGGCTATAAGCAACTTGAAGGAGCCGGGTGGTTCCAACAAGACTACTATAGCAACATACATAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATATTGGGCACCTACAAACTTTAAAAGGCTACTTTCAGCGAAACTGAAGTATTTAACTGCAACTAGGAGACTTGTCAAG.................................................................................................................................................................................................................................................ATGAAGCGAAAGTATATAATAGCACCAACACTGGTATTATCTGACAGAAGAAGAATTCCTTCCGTTCCTCTCTTGGAAAGCAGCCAGAGGATCTCCTCCCGGGTTGATCCGGATGATATAAACACACTTACTAAGGCTCAAGTAGATTTTGAGTTAACTAAGATGAGGAGTATGACACCTCAAGAGGCAGCAGTAGCTGCTGCACGAGCTGTTGCAGAAGCAGAAGTAGCCATAGCAGAAGCTGAGGATGCTGCCAGAGAGGCTGATGCTGCTGAAGCTGATGCCGAAGCTGCACAAGCCTTTGCAGAAGCTGCAATGAAAGCACTAGAAGGGAGAAGCATCCCNAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555396" ref_strand="+" ref_description="SGN-E555396 [cTSC-2-M15]">
      <seq>tgatgattgcatcagttattccagcattagctggttttcttggagtttggagaattgttacaaggttcttgtgtccgctttctaaggctccactggtgttgcttgttggcattgggctatatgagcaaggttttccacttctgggagaatgtgttgaaattggacttccggagttagttctactcatattgttgtctcaattcattcctcatatgtggaaattaaagctacccatatttgagcgatttgctgtcctgttatcagttggaatagtgtgggcatttgcagcccttctcacagtagcaggtgcatacaagaacagacccctacagactcagttcagttgccgagttgatcgctctgggcttgttagtggagcttcatggataagatttccttacccattgcaatggggtattcccaatgttgatgctggacaagtctttatgatgatggctgcagtttttgtttctctcgttgagtctactggaggatttattgcagctgcaagatatggaagtgcaacattttgcccagcttctgtgctgagccgtggtgctggatggctggggttaagtacgttgatcaatggtttatggggaacccccagtggatctactgtatcagttgaaaatgtaggtctattagcattgacacgagttggaagcagaagagtaattcaaatctctgcagtatttatgcttttcttttctgtgttaggaaaatttggagctattcttgcttcaatacctttgccaatcattggagctttatattgtgtcttgtttgccctcatgtctgcagctggttttgatttactacaattctgcaacctcaacagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="+" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="76675" stop="79298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76975" g_stop="77038" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77039" i_stop="77124" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77125" g_stop="77200" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="140" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77201" i_stop="77401" i_length="201">
            <donor d_prob="0.648" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77402" g_stop="77461" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="200" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77462" i_stop="77621" i_length="160">
            <donor d_prob="0.706" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77622" g_stop="77806" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="385" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77807" i_stop="77935" i_length="129">
            <donor d_prob="0.335" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77936" g_stop="78032" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="482" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78033" i_stop="78149" i_length="117">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78150" g_stop="78236" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="569" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78237" i_stop="78336" i_length="100">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78337" g_stop="78395" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="628" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="78396" i_stop="78591" i_length="196">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="78592" g_stop="78683" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="720" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="78684" i_stop="78769" i_length="86">
            <donor d_prob="0.094" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="78770" g_stop="78847" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="798" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="78848" i_stop="78953" i_length="106">
            <donor d_prob="0.613" d_score="1.00"/>
            <acceptor a_prob="0.611" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="78954" g_stop="78998" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="799" r_stop="843" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="+" ref_id="SGN-E555396" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76975" e_stop="77038"/>
          <exon e_start="77125" e_stop="77200"/>
          <exon e_start="77402" e_stop="77461"/>
          <exon e_start="77622" e_stop="77806"/>
          <exon e_start="77936" e_stop="78032"/>
          <exon e_start="78150" e_stop="78236"/>
          <exon e_start="78337" e_stop="78395"/>
          <exon e_start="78592" e_stop="78683"/>
          <exon e_start="78770" e_stop="78847"/>
          <exon e_start="78954" e_stop="78998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGATTGCATCAGTTATTCCAGCATTAGCTGGTTTTCTTGGAGTTTGGAGAATTGTTACAAGGTCGTGGCTCATTTTGAAGGATTATATTAGTAGTTATTGCATCCGCGTAGAAGAGAATGTTTGATTCCAGTTGTTTGACAATGTAGGTTCTTGTGTCCGCTTTCTAAGGCTCCACTGGTGTTGCTTGTTGGCATTGGGCTATATGAGCAAGGTTTTCCACTTGTAAGAAGTTTGGCTGATGCTTACTATACTTCCTTAGTTGCATGTTTCAGACGAAAGATGACACCTTTCCATACTTATAAAATTATTTAATCTTTAAATTTCTCATTTTTCTCTTAGTAACATTCTACAGGTTTTGAGACCACAAGTCACAAGGGTACTTTTGATATGTGCTCAATCTTCTTTTTTCTTGCTTGATGGCAGCTGGGAGAATGTGTTGAAATTGGACTTCCGGAGTTAGTTCTACTCATATTGTTGTCTCAAGTAAGCGTTATTCTTTACAGTTATTGCGTTCAGTATTGAGATGCATGTGTTAAAGATTAAGCATTAGAGGAATGGATATGGAGATCATTTGTGGTGACATTAGTTTTGTTTTTTGTTTGTTTCTGGTCTTCTGATATGTGCTTAATGAATGTTTATGCAGTTCATTCCTCATATGTGGAAATTAAAGCTACCCATATTTGAGCGATTTGCTGTCCTGTTATCAGTTGGAATAGTGTGGGCATTTGCAGCCCTTCTCACAGTAGCAGGTGCATACAAGAACAGACCCCTACAGACTCAGTTCAGTTGCCGAGTTGATCGCTCTGGGCTTGTTAGTGGAGCTTCATGGTGTGTACACACTTAAATAAAGTGATAAATGCCTGGAAGTCAAAGAATTTCTGATTTTATACTTTTAATGCTAGATAGATTCTTTTTCTTTCTGCTTCAACTCTGAAGAAGTCAGTTATCGAAATGCAGGATAAGATTTCCTTACCCATTGCAATGGGGTATTCCCAATGTTGATGCTGGACAAGTCTTTATGATGATGGCTGCAGTTTTTGTTTCTCTCGTTGAGGTTTATATCTTGTTGCCAATGGTTAATCTAATATTCTGGATTTATTCGCTGTGATTTTTTTAGCCTGGTGTTGTTGATATTGCCCTTCTGAAGAACCTTTTCCTACTCTTTTGTCAGTCTACTGGAGGATTTATTGCAGCTGCAAGATATGGAAGTGCAACATTTTGCCCAGCTTCTGTGCTGAGCCGTGGTGCTGGATGGCTGGTAAGTAAATTTATCACATCGCCATTCTCTCTTACTACGTGTTCTTTCTGTTGATCTATGATTCTCTTTCGAACTTAATATTTCTTTTGTTGGTGTCCAGGGGTTAAGTACGTTGATCAATGGTTTATGGGGAACCCCCAGTGGATCTACTGTATCAGTGTAATACATCTATCTACCTTAGGAAATACTTAGAGTAGGATATTTTAGTTTGTTCTACGCTTCATACAAAATTCTAGGCTAGGTTGTTGTCTCTGGATATCTCCGCTCCAACCATCTTTAAAGAAAATGCATCTACAGATACGTTCTTATTACCTGACCATGCGTTGCTAATGCTTTTCTCTCATGAATTATGAAGTGAAAATGTAGGTCTATTAGCATTGACACGAGTTGGAAGCAGAAGAGTAATTCAAATCTCTGCAGTATTTATGCTTTTCTTTTCTGTGTTAGGTGAGACTCATAGTATAATATAGATTATCTTGCTGATTTCTTGTGTGTTCTTGTTTATGAATGTTGGAGTAATGGCTAACAAACAGGAAAATTTGGAGCTATTCTTGCTTCAATACCTTTGCCAATCATTGGAGCTTTATATTGTGTCTTGTTTGCCCTCATGTGTAAGTGAAGTCTCTAAACATGTAATTAATTTCTAGTTTTTTGAATTAGTCCATTTTCCCTATATAATTAAGGTCTTTGCTATATTGTGTCTATTGGATGAGGCAGCTGCAGCTGGTTTTGATTTACTACAATTCTGCAACCTCAACAGCT</genome_strand>
        <mrna_strand>TGATGATTGCATCAGTTATTCCAGCATTAGCTGGTTTTCTTGGAGTTTGGAGAATTGTTACAAG......................................................................................GTTCTTGTGTCCGCTTTCTAAGGCTCCACTGGTGTTGCTTGTTGGCATTGGGCTATATGAGCAAGGTTTTCCACTT.........................................................................................................................................................................................................CTGGGAGAATGTGTTGAAATTGGACTTCCGGAGTTAGTTCTACTCATATTGTTGTCTCAA................................................................................................................................................................TTCATTCCTCATATGTGGAAATTAAAGCTACCCATATTTGAGCGATTTGCTGTCCTGTTATCAGTTGGAATAGTGTGGGCATTTGCAGCCCTTCTCACAGTAGCAGGTGCATACAAGAACAGACCCCTACAGACTCAGTTCAGTTGCCGAGTTGATCGCTCTGGGCTTGTTAGTGGAGCTTCATG.................................................................................................................................GATAAGATTTCCTTACCCATTGCAATGGGGTATTCCCAATGTTGATGCTGGACAAGTCTTTATGATGATGGCTGCAGTTTTTGTTTCTCTCGTTGAG.....................................................................................................................TCTACTGGAGGATTTATTGCAGCTGCAAGATATGGAAGTGCAACATTTTGCCCAGCTTCTGTGCTGAGCCGTGGTGCTGGATGGCTG....................................................................................................GGGTTAAGTACGTTGATCAATGGTTTATGGGGAACCCCCAGTGGATCTACTGTATCAGT....................................................................................................................................................................................................TGAAAATGTAGGTCTATTAGCATTGACACGAGTTGGAAGCAGAAGAGTAATTCAAATCTCTGCAGTATTTATGCTTTTCTTTTCTGTGTTAG......................................................................................GAAAATTTGGAGCTATTCTTGCTTCAATACCTTTGCCAATCATTGGAGCTTTATATTGTGTCTTGTTTGCCCTCATGT..........................................................................................................CTGCAGCTGGTTTTGATTTACTACAATTCTGCAACCTCAACAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E222438" ref_strand="+" ref_description="SGN-E222438 [cLEL-16-E1](-)">
      <seq>atctttactacctggaaacaaatttcaagaaaatcaatggtttgaaaaaaaaaggtggggataacagaccatcaggttttttttttttttttttaattaaaaaaagtgctgatgttaaattgcagccaagtgaatgtttagaaagtgggaaggagtttaatttgtcaaagcaaaaggaattgaatctccaaagggattcttggtcctttttcttttttctgtttttttttttttttggttttcttttggctgtcaatgcattgggaaacagctttaagagaaaaaaaatggggagttaatttcctctctaattatcttgtttgtcaatgaatagtagctacagtttagctcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="+" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="85817" stop="86920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86117" g_stop="86152" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86153" i_stop="86312" i_length="160">
            <donor d_prob="0.949" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86313" g_stop="86620" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="353" r_length="317" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="354" polyA_stop="371"/>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="+" ref_id="SGN-E222438" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86117" e_stop="86152"/>
          <exon e_start="86313" e_stop="86620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTACTACCTGGAAACAAATTTCAAGAAAATCAGTAAGTTCTGTTTTTCCTTTTTTTCTCTCGCATAAATAGTAGCCTTAGAGCAACATTAAAGTCGTTACAGTTCTGTTTTGTGCACTAAATTGTTCTTTTATTTTACGAGAAATAAGCTATTTTGATGATTTAATTAATTTTTTTTTTTTTTCTTGAATAGATGGTTTGAAGAGAAGAGGTGGGGATAACAG-CTATCA-G----TTTTTTTTTTTTTTAATTAAAAAAAGTGCTGATGTTAAATTGCAGCCAAGTGAATGTTTAGAAAGTGGGAAGGAGTTAAATTTGTCAAAGCAAAAGGAATTGAATCTCCAAAGGGATTCTTGTTCCTTTTTCTTTTTTCTG--TTTTTTTTTTTTTGGTTTTCTTTTGGCTGTCAATGCATTGGGAAACAGCTTTAAGAGAAAAAAAATGG-GAGTTAATTTCCTCTCTAATTATCTTGTTTGTCAATGAATAGTAGCTACAGTTTAGCTCTT</genome_strand>
        <mrna_strand>ATCTTTACTACCTGGAAACAAATTTCAAGAAAATCA................................................................................................................................................................ATGGTTTGAAAAAAAAAGGTGGGGATAACAGACCATCAGGTTTTTTTTTTTTTTTTTTAATTAAAAAAAGTGCTGATGTTAAATTGCAGCCAAGTGAATGTTTAGAAAGTGGGAAGGAGTTTAATTTGTCAAAGCAAAAGGAATTGAATCTCCAAAGGGATTCTTGGTCCTTTTTCTTTTTTCTGTTTTTTTTTTTTTTTGGTTTTCTTTTGGCTGTCAATGCATTGGGAAACAGCTTTAAGAGAAAAAAAATGGGGAGTTAATTTCCTCTCTAATTATCTTGTTTGTCAATGAATAGTAGCTACAGTTTAGCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E222511" ref_strand="+" ref_description="SGN-E222511 [cLEL-16-E1](-)">
      <seq>ttttttttttaattaaaaaaagtgctgatgttaaattgcagccaagtgaatgtttagaaagtgggaagaagttaaatttgtcaaagcaaaaggaattgaatctccaaaggaaattcttgatcctttttcgtttttctgttttttttttattttggttttcttttggctgtcaatgcattgggaaacagctttaagagaaaaaaaatgggagttaatttcctctctaattatcttgtttgtcactgaatagtagctacagtttagctcttataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="+" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="86055" stop="86927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86355" g_stop="86620" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="270" polyA_stop="287"/>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="+" ref_id="SGN-E222511" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86355" e_stop="86620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTAATTAAAAAAAGTGCTGATGTTAAATTGCAGCCAAGTGAATGTTTAGAAAGTGGGAAGGAGTTAAATTTGTCAAAGCAAAAGGAATTGAATCTCCAAAGGGA-TTCTTGTTCCTTTTTCTTTTTTCTG-TTTTTTTTT-TTTTGGTTTTCTTTTGGCTGTCAATGCATTGGGAAACAGCTTTAAGAGAAAAAAAATGGGAGTTAATTTCCTCTCTAATTATCTTGTTTGTCAATGAATAGTAGCTACAGTTTAGCTCTT</genome_strand>
        <mrna_strand>TTTTTTTTTTAATTAAAAAAAGTGCTGATGTTAAATTGCAGCCAAGTGAATGTTTAGAAAGTGGGAAGAAGTTAAATTTGTCAAAGCAAAAGGAATTGAATCTCCAAAGGAAATTCTTGATCCTTTTTCGTTTTTCTGTTTTTTTTTTATTTTGGTTTTCTTTTGGCTGTCAATGCATTGGGAAACAGCTTTAAGAGAAAAAAAATGGGAGTTAATTTCCTCTCTAATTATCTTGTTTGTCACTGAATAGTAGCTACAGTTTAGCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213368" ref_strand="-" ref_description="SGN-E213368 [cLEC-71-M15]">
      <seq>ggaacgtttgtatggtggccctaatgctcttagccgaggtagtcgtgggacacatactagcacgactcggagtgccataagcaagcatcttgatgtagaggagcttgaaatgctcctagaagcatactttgttcaaattgacggtacattgaataaactgaacactctacgtgaatatgtggatgacacagaagactacatcaacatcatgctggatgacaagcagaaccatctgttgcaaatgggagtcatgttaacaacggcaactcttgtggttagcgcctttgttgttgtggctggaattttcggtatgaacattaacattgaactgttcgacgagaaaaaagctgggatgccagaattcttatggacaatcggtggtggtgccactggcagtctcttcttatatgtagttgcaattgcctggggtaagcacaagcaattgctcgagtgaacagagagatttgtgaatatattgacatgtaattcaatttgacagataaaaaaacaagataaagtgaattttaccatgacctatagtgtgctatataacaagtgtatccgattctccgaaataattattgaacttgaaaatgtatattttagctcaaccatgttttgatgaatggtttcaagtgatggaattcattttagctgttatactgaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="94688" stop="89608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94388" g_stop="94223" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94222" i_stop="90412" i_length="3811">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90411" g_stop="89913" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="665" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="666" polyA_stop="684"/>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E213368" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213368" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94388" e_stop="94223"/>
          <exon e_start="90411" e_stop="89913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACGTTTGTATGGTGGCCCTAATGCTCTTAGCCGAGGTAGTCGTGGGACACATACTAGCACGACTCGGAGTGCCATAAGCAAGCATCTTGATGTAGAGGAGCTTGAAATGCTCCTAGAAGCATACTTTGTTCAAATTGACGGTACATTGAATAAACTGAACACTGTGAGTGATCTTTCTAGATAATTGAATTACTCTGACAAGTATATAGATTGTTAGTTTAGCTTCAAGACATTTATAAGACTCATTTTGCAATCTATGAAAAGAATGCTTTACACAAAATAATTTGGACTAGACTTGTAAAAGTTGTCTAATATTATTTCATATTTTGGGATGGAACCTTGCTGTTTGTAGCTAACAATGATTAGTGGGTGCACAATTGATGCATTAAATACTCATCTAGATGCTTGACCCATTTTAAATAGTTGCATGAATTGCCTTGCCAATATCATTGCATCAATTAAGGGGCTGATTTACTAAGGTAAAACTCCCGTAGACTATTTAATTTTTTTGACAAAGAGTTCGTAAAACTTCAACTATCATGTTATTGGACGTGTATTTGTACTATTATGTGCATATATGTCAATGCGACTACTTCCATTTTTTGAGGTTGAAAGGATATAGGATAAAATTCGACTACTTCCATCAAAAGCCTACAAGTGTTACTTGAACTGTTGATTTTATAGAAATTTTATTTAGCTGAGTTTCCACTTATTGATATTCCATTTTCTCTATAACCACACTAGGGAAAATCCTTGTCTATCAAAAAGTAGAGAATTTTGATAAATATTTGGCTCTCTACCATCTCAGCAATCACCTATGCCGATTGGAATTTCATGGTTAGACTGAAAATTAGCAAAATAATAAAACGAAAAATAAAGCAAGAATCTTCCAAAATTTATGCAAAAGAGTTTTTCTTCCATTCGAAGACTCTCGGGTTACATTTCCATTCAAATTTAAATGAGTGTTGAAGGGACTACTCCCCAAGCCCCAGTTTTATTTTACTTAATGATTAGGACTAATTGATGTAGACAGAAATCGAAAGTACAATTGCTATTCCAATTTTATTTGCGTAACTCATGATTGCTTGACTGAAAATAGGTCTGATCATCTAAAACGACTAGCTTTGTCGCACAAAACATAGGATTAGGGCGGCTAACGCAATTTTGGATCAACTGTGGAAATTTGATGGGCATTTTGAGAGAATACGGTAAAGTTTTGCAGAGAGATAGATCCATGCCCTGTTACATCCAACTTAAGTTACCAGCTTTTGTATTTTTGTGTGTAGGATTCATAAGGGTTGTGATCTAAGCACACTTTTGTGCATGTCCACTCTCACTGATATATAACCACATGCCTGTGGGCCTTAACTAAAAGAGGAAAATGGCAGAAAGATAAGGGGCCTAAAGTGCCATTTATGGTTCTCTTGGGATGAGGAGTGTTTTGTTGTACGTGTGGTGTGCCTTTTAGAGGAATTGAATTTTAAGGCTTTATATTGATGGTAGTTGGTAGGACAACAATGATTTTCCCCATACTTTCTTGATTCCTATCTAACCATAAAATTTATTTAAAGAACCAAAAAACCTAATCATCTCCTTTTCTTTTGCTTTTAATAACTGTGGTGTGTGGTGTCCGAGGCCAACTTGTGCGCACCTCGACTAATTCCGTGGGATACCTTCCTCTTCTCCTATTTGTATCCATGTTTTTTGTCTTTACTCCTATTCATTATTTTTTGCTTTTTTATTTTCCTTCCCTTCTTTTATTTGTGTTATTGTAATGACCATTTAAGCGTACAATTGGTAACATTAATCTTTTTTATACCAAATAATAGTGATTTCATCCATGGGGCAGAATGTGGATTCACTATTTTCTTACTTTTTAAATCCAATATTACCTGATAATGAGAGTATGAAAAGTTGAAAAAGAAACTGAAAAACAGTTAGATTGAGAATATTCTTATGTCCCAACTTCTTTAAAACAGGATAAGATACTCTATTATCACACTCACAGAGTTATTATGAACTTGAATTTTAGAACAAATGGTTTGAGACTCTTATTTTGATTTCTTGAGCTGGGAGAACTATGATTTGGGTTCTGATACCAGGCAGCCCGGTGTATGAAGCATACAACATTTTTCTTAGTGTTAGGTAGTGGTGGAGCGGAAATTTGTACAATTCTGAGGTCCTTTTTGTCTCTGTTCTCCACCAACTTTATAGGTCTGATCATCTAAAAAGACTAGCTTTATCGCACCAAACTTAGGAGTAGGGAGATTAATGTAATTTTGGGTCCTGTCCATTGAGGGGCATTTGTAATTAGAGGGAGCCTCATGTTAAACTAGGATGCTCATGGCAATAGTTGATTTGCATGCCACCAGAGTGGCCGTTTTCCAGAGAGAGAAAAAGTGAAAGAGGTTGGAGGATAGAATGAGAGGAGAAAACGAAAGCTTCAAAGTTGAAGAAATCTCCTACAAACCATCTAGACATCTATGCAAATGTATAGATACACAGCTTTATCTGCACTATCCAAAAATAATTTTCTGATCATATAAATAAATTAATGATGTCCACCAGACATCTCATATTCAACTTGGGTTATTTGTAATTAGCTCCAAAATGAAGTAGTTGAGGTATGGTATTAGAGCAAATGAAGGTAGTGGTTCCCAAACTTAATGGTGTAGTGAGGAATGAGAGGGAGCACAATGGGGTCACCCTAGCTTTAGAAGGATGAGACTCCGCTGCAAATCTACTATTCATTTATAGAGAAGGATGTTCAAGAAAATGTGCTATAATTCTTCAAAGAGGATTTAAGAAAAAGGAACAGATACAGGCTGTGATTGTGAAGCCCTGATAAAAACAGGGAACAGATCTTTAGATAGGTTGATTTTTTGAAGTCTGTCCAATCCAAACTTTTTAATTAAGTGAAGTTCTGTTCTTAATAATATTTTTGTCCTCCGCTGACCAACAGTTAATTTTGAAATTATGTCCCCATAGTTGTGCACCTCTTGAAATTTGCTTCTGGAAGGATTTGGACAGTATTATCAATTTCTGTTGATACATTAAAATATATGTATCAGTTGTATGGCTAGCTCTCTTATCGCAAGAGAGTATATAATGGTTAAATATAGAGCCAGAAGTATGTTCTCGAATGGAATCTTTAATGAAGTGTAGCTTGCAGAGAAACTAAGAACCTGACGACCAACCAAGCTTCAGAATTTAGACAATTACCTTAGCAATCAAATGGCATTTGATTCTGATACATTTACCAGAAGAAGAAATCACATCAGTAAGATTATGCATTCTAATTTCTTTGTGTGAGCAACAATGCTAAGTTTTCACATGGAACAGAAAGTAAAAGGTGAATCTTTATCAATTAACATTTAAAGAAACTATAAACTAAAAGCTGCATCATGGCCTAGTTATAATTAAGTTTATCAAGAAAGAATTTTGTTGTATTTAGAGGAAGAAGAAGACCTCGGTTATGCAGATACCTTAAAGATTTAGGTTTATGACTGTAGCATCCAGTACACCATTTCAGAATAATTTTGCATCACCATTTCACATGTGCATTATTAATGATACAACCTAGGTGATGATGCACTGCATTCTTCTATTTGTCATCTCTATTTTGCATCCTAGTTTGACTTTCTCTAGCTATTCCCTTTCTCAGTTAATTTTATCTGACTTTTCAAAGCTCAGATAATAGATGAAAAGTAATGTTGGATAAAAACCACTGCATGTGGGTTGTAATTGCAAATAATGACATTGATTTTGGAATAGCATTATCAGAGATGAAGTTCAATCACACAAGTCAAATTTGGACATGAACTGTTGTTCTATTACCTACTTGCTATATAAATGTCTTTTGTTTTCACCTAAACCAGATTCAATGTTAACTACTTTGTATACATGGATGCTGAACTTTAGTTTGTTCCACTGTTGTGATCTCTCTCTTTTGAATCTGTTTTAATTTTCTTCAGCTACGTGAATATGTGGATGACACAGAAGACTACATCAACATCATGCTGGATGACAAGCAGAACCATCTGTTGCAAATGGGAGTCATGTTAACAACGGCAACTCTTGTGGTTAGCGCCTTTGTTGTTGTGGCTGGAATTTTCGGTATGAACATTAACATTGAACTGTTCGACGAGAAAAAAGCTGGGATGCCAGAATTCTTATGGACAATCGGTGGTGGTGCCACTGGCAGTCTCTTCTTATATGTAGTTGCAATTGCCTGGGGTAAGCACAAGCAATTGCTCGAGTGAACAGAGAGATTTGTGAATATATTGACATGTAATTCAATTTGACAGATAAAAAAACAAGATAAAGTGAATTTTACCATGACCTATAGTGTGCTATATAACAAGTGTATCCGATTCTCCGAAATAATTATTGAACTTGAAAATGTATATTTTAGCTCAACCATGTTTTGATGAATGGTTTCAAGTGATGGAATTCATTTTAGCTGTTATACTG</genome_strand>
        <mrna_strand>GGAACGTTTGTATGGTGGCCCTAATGCTCTTAGCCGAGGTAGTCGTGGGACACATACTAGCACGACTCGGAGTGCCATAAGCAAGCATCTTGATGTAGAGGAGCTTGAAATGCTCCTAGAAGCATACTTTGTTCAAATTGACGGTACATTGAATAAACTGAACACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGTGAATATGTGGATGACACAGAAGACTACATCAACATCATGCTGGATGACAAGCAGAACCATCTGTTGCAAATGGGAGTCATGTTAACAACGGCAACTCTTGTGGTTAGCGCCTTTGTTGTTGTGGCTGGAATTTTCGGTATGAACATTAACATTGAACTGTTCGACGAGAAAAAAGCTGGGATGCCAGAATTCTTATGGACAATCGGTGGTGGTGCCACTGGCAGTCTCTTCTTATATGTAGTTGCAATTGCCTGGGGTAAGCACAAGCAATTGCTCGAGTGAACAGAGAGATTTGTGAATATATTGACATGTAATTCAATTTGACAGATAAAAAAACAAGATAAAGTGAATTTTACCATGACCTATAGTGTGCTATATAACAAGTGTATCCGATTCTCCGAAATAATTATTGAACTTGAAAATGTATATTTTAGCTCAACCATGTTTTGATGAATGGTTTCAAGTGATGGAATTCATTTTAGCTGTTATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265245" ref_strand="-" ref_description="SGN-E265245 [cLEI-9-A17]">
      <seq>attgaactgttcgacgagaaaaaagctgggatgccagaattcttatggacaatcggtggtggtgccactggcagtctcttcttatatgtagttgcaattgcctggggtaagcacaagcaattgctcgagtgaacagagagatttgtgaatatattgacatgtaattcaatttgacagataaaaaaacaagataaagtgaattttaccatgacctatagtgtgctatataacaagtgtatccgattctccgaaataattattgaacttgaaaatgtatattttagctcaaccatgttttgatgaatggtttcaagtgatggaattcattttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="90555" stop="89625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90255" g_stop="89925" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="346"/>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E265245" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265245" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90255" e_stop="89925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAACTGTTCGACGAGAAAAAAGCTGGGATGCCAGAATTCTTATGGACAATCGGTGGTGGTGCCACTGGCAGTCTCTTCTTATATGTAGTTGCAATTGCCTGGGGTAAGCACAAGCAATTGCTCGAGTGAACAGAGAGATTTGTGAATATATTGACATGTAATTCAATTTGACAGATAAAAAAACAAGATAAAGTGAATTTTACCATGACCTATAGTGTGCTATATAACAAGTGTATCCGATTCTCCGAAATAATTATTGAACTTGAAAATGTATATTTTAGCTCAACCATGTTTTGATGAATGGTTTCAAGTGATGGAATTCATTTTA</genome_strand>
        <mrna_strand>ATTGAACTGTTCGACGAGAAAAAAGCTGGGATGCCAGAATTCTTATGGACAATCGGTGGTGGTGCCACTGGCAGTCTCTTCTTATATGTAGTTGCAATTGCCTGGGGTAAGCACAAGCAATTGCTCGAGTGAACAGAGAGATTTGTGAATATATTGACATGTAATTCAATTTGACAGATAAAAAAACAAGATAAAGTGAATTTTACCATGACCTATAGTGTGCTATATAACAAGTGTATCCGATTCTCCGAAATAATTATTGAACTTGAAAATGTATATTTTAGCTCAACCATGTTTTGATGAATGGTTTCAAGTGATGGAATTCATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354950" ref_strand="+" ref_description="SGN-E354950 [cTOS-19-I6]">
      <seq>gcctttgttgttgtggctggaattttcggtatgaacattaacattgaactgttcgacgagaaaaaagctgggatgccagaattcttatggacaatcggtggtggtgccactggcagtctcttcttatatgtagttgcaattgcctggggtaagcacaagcaattgctcgagtgaacagagagatttgtgaatatattgacatgtaattcaatttgacagataaaaaaacaagataaagtgaattttaccatgacctatagtgtgctatataacaagtgtatccgattctccgaaataattattgaacttgaaaatgtatattttagctcaaccatgttttgatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="90597" stop="89652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90297" g_stop="89944" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E354950" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90297" e_stop="89944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTGTTGTTGTGGCTGGAATTTTCGGTATGAACATTAACATTGAACTGTTCGACGAGAAAAAAGCTGGGATGCCAGAATTCTTATGGACAATCGGTGGTGGTGCCACTGGCAGTCTCTTCTTATATGTAGTTGCAATTGCCTGGGGTAAGCACAAGCAATTGCTCGAGTGAACAGAGAGATTTGTGAATATATTGACATGTAATTCAATTTGACAGATAAAAAAACAAGATAAAGTGAATTTTACCATGACCTATAGTGTGCTATATAACAAGTGTATCCGATTCTCCGAAATAATTATTGAACTTGAAAATGTATATTTTAGCTCAACCATGTTTTGATGAATGGTTTCA</genome_strand>
        <mrna_strand>GCCTTTGTTGTTGTGGCTGGAATTTTCGGTATGAACATTAACATTGAACTGTTCGACGAGAAAAAAGCTGGGATGCCAGAATTCTTATGGACAATCGGTGGTGGTGCCACTGGCAGTCTCTTCTTATATGTAGTTGCAATTGCCTGGGGTAAGCACAAGCAATTGCTCGAGTGAACAGAGAGATTTGTGAATATATTGACATGTAATTCAATTTGACAGATAAAAAAACAAGATAAAGTGAATTTTACCATGACCTATAGTGTGCTATATAACAAGTGTATCCGATTCTCCGAAATAATTATTGAACTTGAAAATGTATATTTTAGCTCAACCATGTTTTGATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547674" ref_strand="+" ref_description="SGN-E547674 [TUS-71-K21](-)">
      <seq>gggagtcatgttaacaacggcaactcttgtggttagtgcttttgttgttgtggctggaattttcggtatgaacattaacattgaactgttcgacgaaaaaaaagctgggatgccggaattcttatggacaatcggtggtggtgccactggcagtctcttcttatatgtagttgcaattgcctggggtaagcacaagcaattgctcgagtgaacagagagaattgtgaagatattgacatgtaattcaatttgacagataaaaaaacaagatacatgtgaattatatagtgtgctatataacagagtgtatctgattctccganaataattattaaacttgaaaatgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="90634" stop="89678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90334" g_stop="89970" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E547674" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90334" e_stop="89970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTCATGTTAACAACGGCAACTCTTGTGGTTAGCGCCTTTGTTGTTGTGGCTGGAATTTTCGGTATGAACATTAACATTGAACTGTTCGACGAGAAAAAAGCTGGGATGCCAGAATTCTTATGGACAATCGGTGGTGGTGCCACTGGCAGTCTCTTCTTATATGTAGTTGCAATTGCCTGGGGTAAGCACAAGCAATTGCTCGAGTGAACAGAGAGATTTGTGAATATATTGACATGTAATTCAATTTGACAGATAAAAAAACAAGATAAAGTGAATTTTACCATGACCTATAGTGTGCTATATAACA-AGTGTATCCGATTCTCCGA-AATAATTATTGAACTTGAAAATGTATATTTTAGCT</genome_strand>
        <mrna_strand>GGGAGTCATGTTAACAACGGCAACTCTTGTGGTTAGTGCTTTTGTTGTTGTGGCTGGAATTTTCGGTATGAACATTAACATTGAACTGTTCGACGAAAAAAAAGCTGGGATGCCGGAATTCTTATGGACAATCGGTGGTGGTGCCACTGGCAGTCTCTTCTTATATGTAGTTGCAATTGCCTGGGGTAAGCACAAGCAATTGCTCGAGTGAACAGAGAGAATTGTGAAGATATTGACATGTAATTCAATTTGACAGATAAAAAAACAAGATACA-TG----TGA--ATTA--TATAGTGTGCTATATAACAGAGTGTATCTGATTCTCCGANAATAATTATTAAACTTGAAAATGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694540" ref_strand="+" ref_description="SGN-E694540 [LH_Ea04D02](-)">
      <seq>gaaggtgagagatgaactggagcatctactcgatgatgatgaagatatggcggagatgtatttaactgacaagttgatggaacaacttgaaaattcttctgtttcctctataagcggacaagatggcatcgatgaggaagttattcagtcgaacatggatgatagggttcctgtggaaatctcaatggacacaaatgcaggttccacaagttatgatgcagacactccacatattgaccaacaccaggaacgtttgtatggtggccctaatgctcttagccgaggtagtcgtgggacacatattagcacgactcggagtgccataagcaagcatcttgacgtagaggagcttgaaatgctcctagaagcatactttgttcaaattgacggtacattgaataaactgaacactctacgtgagtatgtggatgacacagaagactacatcaacatcatgctggatgacaagcagaaccatctgttgcaaatgggagtcatgttaacaacggcaactcttgtggttagcgcctttgttgttgtggctggaattttcggtatgaacattaacattgaactgttcgacgagaaaaaagctgggatgccggaatttttatggacaattggtggtggtgccactggcagtctcttcttatatgtggttgcaattgcctggggtaagcacaagcaattgctcgagtgaacagagagaattgtgaagatattggcaagggattcaatttgacagataaaaaaacatgatactcttaaagggtccatgacctatagtgtgctatataacaagtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="95853" stop="89721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95824" g_stop="95821" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95820" i_stop="95552" i_length="269">
            <donor d_prob="0.349" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95551" g_stop="95391" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="165" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95390" i_stop="94470" i_length="921">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94469" g_stop="94223" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="412" r_length="247" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94222" i_stop="90412" i_length="3811">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90411" g_stop="90021" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="803" r_length="391" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="804" polyA_stop="818"/>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E694540" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95824" e_stop="95821"/>
          <exon e_start="95551" e_stop="95391"/>
          <exon e_start="94469" e_stop="94223"/>
          <exon e_start="90411" e_stop="90021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTCAACATGTACTAATATAGTTTTCTAGCAAGTGTTTCACACGTACCATCTATTAGATGGTTTAGTTTTGAGGCACTGCTGTTATAGTCTGCAAATTGCTTGTAGATCTAAGCCTCAAAATTGATCTCTAGCATTACTCTTAAGAGAATACTTGATAGACAAAGGGTTACAAAATGAACTACTATGTTCCTTTTCTTTTTGAGTGATTGCTCTGAAATGTGCTATCCACAAATTTTTTGGTACTCAAATCTGCATTTCTTCATTGTTAGGTGAGAGATGAACTGGAGCATCTACTCGATGATGATGAAGATATGGCGGAGATGTATTTAACTGACAAGCTGATGGAACAACTTGAAAATTCTTCTGTTTCCTCTATAAGCGGACAAGATGGCATCGATGAGGAAGTTATTCAGTCGAACATGGATGATAGGTATGTCATATATTTCTGATGTCTTATCCTCCCCCTTGTGTTTCAGGACCTCTATATTTGTAAACTAGAAGGATCTCCCTTAGTCTGTCATCAACATGTTGAGCCTAAGCAGTTTAATTTCAAAAATTTTCTTGGAAAATGGTTGCATTTATAGATAACTTGCATTTGGGAGAAGCCAGGATGGCCTGTCATGACAATATATTATCCATTAGTGCTACTTTATCCACATCTTCTCTGCCCTTCAAACAGATGATAAAAAATCTTTGGAGAAGCTGAATCTCAATTATTCACCACTATCTGGATCTCCAGTCTGCAGTCTCTTTCCCTGCTTCATTTTACTTTTAGAGTTTTTGCACAATTGTATGAATAGCTAAAAAAGAAAATCTTTTGAGCACCAATAGAGTCAATACCTTTATTCTCATTACTATTTATAGTTGATCTGATGTGCCAGCAGAGTAAAGTATGCACACATTTGTTAATGCTACTTCCATCTGCTGAGATGCTATTGGTCCTTTATTTTCTGAAGAATAAAAAGAGATACACTATCGGTTCTATAGTGTGTTTGTCTTTGTCTTTGTTATGTTGTTTCATCATCTACATCTGACCACATTGAGCTTGTGAATTAATGTGTCATGCCTCGCCCTGAATGAGCGTCCCTGCAGATATTACTGCCTTATAACTCTTCTCTATCAAGCCGAATGGATCCCAGAGTCTGGGAAAATGTGACTAGTGTGGAGGATTTTCTTGACTGTTAAAACAATGCTAGTATGATGAACTTTTCTTCAAATCTGGTCTTGGATACTGAGACAACTACTGATCAAATGCTATTTAAAAATGCTTTTGCGCAATCCTGAGAGGTGTCGGTGATGTCGATCAGTGTTTCTATGTTATTCCTAAAATTCAAGCTATTTGATATGTCAGGGTTCCTGTGGAAATCTCAATGGACGCAAATGCAGGTTCCACAAGTTATGATGCAGACACTCCACATATTGACCAACACCAGGAACGTTTGTATGGTGGCCCTAATGCTCTTAGCCGAGGTAGTCGTGGGACACATACTAGCACGACTCGGAGTGCCATAAGCAAGCATCTTGATGTAGAGGAGCTTGAAATGCTCCTAGAAGCATACTTTGTTCAAATTGACGGTACATTGAATAAACTGAACACTGTGAGTGATCTTTCTAGATAATTGAATTACTCTGACAAGTATATAGATTGTTAGTTTAGCTTCAAGACATTTATAAGACTCATTTTGCAATCTATGAAAAGAATGCTTTACACAAAATAATTTGGACTAGACTTGTAAAAGTTGTCTAATATTATTTCATATTTTGGGATGGAACCTTGCTGTTTGTAGCTAACAATGATTAGTGGGTGCACAATTGATGCATTAAATACTCATCTAGATGCTTGACCCATTTTAAATAGTTGCATGAATTGCCTTGCCAATATCATTGCATCAATTAAGGGGCTGATTTACTAAGGTAAAACTCCCGTAGACTATTTAATTTTTTTGACAAAGAGTTCGTAAAACTTCAACTATCATGTTATTGGACGTGTATTTGTACTATTATGTGCATATATGTCAATGCGACTACTTCCATTTTTTGAGGTTGAAAGGATATAGGATAAAATTCGACTACTTCCATCAAAAGCCTACAAGTGTTACTTGAACTGTTGATTTTATAGAAATTTTATTTAGCTGAGTTTCCACTTATTGATATTCCATTTTCTCTATAACCACACTAGGGAAAATCCTTGTCTATCAAAAAGTAGAGAATTTTGATAAATATTTGGCTCTCTACCATCTCAGCAATCACCTATGCCGATTGGAATTTCATGGTTAGACTGAAAATTAGCAAAATAATAAAACGAAAAATAAAGCAAGAATCTTCCAAAATTTATGCAAAAGAGTTTTTCTTCCATTCGAAGACTCTCGGGTTACATTTCCATTCAAATTTAAATGAGTGTTGAAGGGACTACTCCCCAAGCCCCAGTTTTATTTTACTTAATGATTAGGACTAATTGATGTAGACAGAAATCGAAAGTACAATTGCTATTCCAATTTTATTTGCGTAACTCATGATTGCTTGACTGAAAATAGGTCTGATCATCTAAAACGACTAGCTTTGTCGCACAAAACATAGGATTAGGGCGGCTAACGCAATTTTGGATCAACTGTGGAAATTTGATGGGCATTTTGAGAGAATACGGTAAAGTTTTGCAGAGAGATAGATCCATGCCCTGTTACATCCAACTTAAGTTACCAGCTTTTGTATTTTTGTGTGTAGGATTCATAAGGGTTGTGATCTAAGCACACTTTTGTGCATGTCCACTCTCACTGATATATAACCACATGCCTGTGGGCCTTAACTAAAAGAGGAAAATGGCAGAAAGATAAGGGGCCTAAAGTGCCATTTATGGTTCTCTTGGGATGAGGAGTGTTTTGTTGTACGTGTGGTGTGCCTTTTAGAGGAATTGAATTTTAAGGCTTTATATTGATGGTAGTTGGTAGGACAACAATGATTTTCCCCATACTTTCTTGATTCCTATCTAACCATAAAATTTATTTAAAGAACCAAAAAACCTAATCATCTCCTTTTCTTTTGCTTTTAATAACTGTGGTGTGTGGTGTCCGAGGCCAACTTGTGCGCACCTCGACTAATTCCGTGGGATACCTTCCTCTTCTCCTATTTGTATCCATGTTTTTTGTCTTTACTCCTATTCATTATTTTTTGCTTTTTTATTTTCCTTCCCTTCTTTTATTTGTGTTATTGTAATGACCATTTAAGCGTACAATTGGTAACATTAATCTTTTTTATACCAAATAATAGTGATTTCATCCATGGGGCAGAATGTGGATTCACTATTTTCTTACTTTTTAAATCCAATATTACCTGATAATGAGAGTATGAAAAGTTGAAAAAGAAACTGAAAAACAGTTAGATTGAGAATATTCTTATGTCCCAACTTCTTTAAAACAGGATAAGATACTCTATTATCACACTCACAGAGTTATTATGAACTTGAATTTTAGAACAAATGGTTTGAGACTCTTATTTTGATTTCTTGAGCTGGGAGAACTATGATTTGGGTTCTGATACCAGGCAGCCCGGTGTATGAAGCATACAACATTTTTCTTAGTGTTAGGTAGTGGTGGAGCGGAAATTTGTACAATTCTGAGGTCCTTTTTGTCTCTGTTCTCCACCAACTTTATAGGTCTGATCATCTAAAAAGACTAGCTTTATCGCACCAAACTTAGGAGTAGGGAGATTAATGTAATTTTGGGTCCTGTCCATTGAGGGGCATTTGTAATTAGAGGGAGCCTCATGTTAAACTAGGATGCTCATGGCAATAGTTGATTTGCATGCCACCAGAGTGGCCGTTTTCCAGAGAGAGAAAAAGTGAAAGAGGTTGGAGGATAGAATGAGAGGAGAAAACGAAAGCTTCAAAGTTGAAGAAATCTCCTACAAACCATCTAGACATCTATGCAAATGTATAGATACACAGCTTTATCTGCACTATCCAAAAATAATTTTCTGATCATATAAATAAATTAATGATGTCCACCAGACATCTCATATTCAACTTGGGTTATTTGTAATTAGCTCCAAAATGAAGTAGTTGAGGTATGGTATTAGAGCAAATGAAGGTAGTGGTTCCCAAACTTAATGGTGTAGTGAGGAATGAGAGGGAGCACAATGGGGTCACCCTAGCTTTAGAAGGATGAGACTCCGCTGCAAATCTACTATTCATTTATAGAGAAGGATGTTCAAGAAAATGTGCTATAATTCTTCAAAGAGGATTTAAGAAAAAGGAACAGATACAGGCTGTGATTGTGAAGCCCTGATAAAAACAGGGAACAGATCTTTAGATAGGTTGATTTTTTGAAGTCTGTCCAATCCAAACTTTTTAATTAAGTGAAGTTCTGTTCTTAATAATATTTTTGTCCTCCGCTGACCAACAGTTAATTTTGAAATTATGTCCCCATAGTTGTGCACCTCTTGAAATTTGCTTCTGGAAGGATTTGGACAGTATTATCAATTTCTGTTGATACATTAAAATATATGTATCAGTTGTATGGCTAGCTCTCTTATCGCAAGAGAGTATATAATGGTTAAATATAGAGCCAGAAGTATGTTCTCGAATGGAATCTTTAATGAAGTGTAGCTTGCAGAGAAACTAAGAACCTGACGACCAACCAAGCTTCAGAATTTAGACAATTACCTTAGCAATCAAATGGCATTTGATTCTGATACATTTACCAGAAGAAGAAATCACATCAGTAAGATTATGCATTCTAATTTCTTTGTGTGAGCAACAATGCTAAGTTTTCACATGGAACAGAAAGTAAAAGGTGAATCTTTATCAATTAACATTTAAAGAAACTATAAACTAAAAGCTGCATCATGGCCTAGTTATAATTAAGTTTATCAAGAAAGAATTTTGTTGTATTTAGAGGAAGAAGAAGACCTCGGTTATGCAGATACCTTAAAGATTTAGGTTTATGACTGTAGCATCCAGTACACCATTTCAGAATAATTTTGCATCACCATTTCACATGTGCATTATTAATGATACAACCTAGGTGATGATGCACTGCATTCTTCTATTTGTCATCTCTATTTTGCATCCTAGTTTGACTTTCTCTAGCTATTCCCTTTCTCAGTTAATTTTATCTGACTTTTCAAAGCTCAGATAATAGATGAAAAGTAATGTTGGATAAAAACCACTGCATGTGGGTTGTAATTGCAAATAATGACATTGATTTTGGAATAGCATTATCAGAGATGAAGTTCAATCACACAAGTCAAATTTGGACATGAACTGTTGTTCTATTACCTACTTGCTATATAAATGTCTTTTGTTTTCACCTAAACCAGATTCAATGTTAACTACTTTGTATACATGGATGCTGAACTTTAGTTTGTTCCACTGTTGTGATCTCTCTCTTTTGAATCTGTTTTAATTTTCTTCAGCTACGTGAATATGTGGATGACACAGAAGACTACATCAACATCATGCTGGATGACAAGCAGAACCATCTGTTGCAAATGGGAGTCATGTTAACAACGGCAACTCTTGTGGTTAGCGCCTTTGTTGTTGTGGCTGGAATTTTCGGTATGAACATTAACATTGAACTGTTCGACGAGAAAAAAGCTGGGATGCCAGAATTCTTATGGACAATCGGTGGTGGTGCCACTGGCAGTCTCTTCTTATATGTAGTTGCAATTGCCTGGGGTAAGCACAAGCAATTGCTCGAGTGAACAGAGAGATTTGTGAATATATTGACATGTAATTCAATTTGACAGATAAAAAAACAAGATAAAGTGAATTTTACCATGACCTATAGTGTGCTATATAACAAGT</genome_strand>
        <mrna_strand>GAAG.............................................................................................................................................................................................................................................................................GTGAGAGATGAACTGGAGCATCTACTCGATGATGATGAAGATATGGCGGAGATGTATTTAACTGACAAGTTGATGGAACAACTTGAAAATTCTTCTGTTTCCTCTATAAGCGGACAAGATGGCATCGATGAGGAAGTTATTCAGTCGAACATGGATGATAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCCTGTGGAAATCTCAATGGACACAAATGCAGGTTCCACAAGTTATGATGCAGACACTCCACATATTGACCAACACCAGGAACGTTTGTATGGTGGCCCTAATGCTCTTAGCCGAGGTAGTCGTGGGACACATATTAGCACGACTCGGAGTGCCATAAGCAAGCATCTTGACGTAGAGGAGCTTGAAATGCTCCTAGAAGCATACTTTGTTCAAATTGACGGTACATTGAATAAACTGAACACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGTGAGTATGTGGATGACACAGAAGACTACATCAACATCATGCTGGATGACAAGCAGAACCATCTGTTGCAAATGGGAGTCATGTTAACAACGGCAACTCTTGTGGTTAGCGCCTTTGTTGTTGTGGCTGGAATTTTCGGTATGAACATTAACATTGAACTGTTCGACGAGAAAAAAGCTGGGATGCCGGAATTTTTATGGACAATTGGTGGTGGTGCCACTGGCAGTCTCTTCTTATATGTGGTTGCAATTGCCTGGGGTAAGCACAAGCAATTGCTCGAGTGAACAGAGAGAATTGTGAAGATATTGGCAAGGGATTCAATTTGACAGATAAAAAAACATGATACTCTTAAAGGGTCCATGACCTATAGTGTGCTATATAACAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690700" ref_strand="+" ref_description="SGN-E690700 [LH_Ea04D02]">
      <seq>cctttaaaggagcaagaagctcatcctgctttagataagcccttttcaaagattagtactctcaacttggaacgtgttcgtcaaatcaaaagtcgcttggttgctattacaggacgtgttcagaaggtgagagatgaactggagcatctactcgatgatgatgaagatatggcggagatgtatttaactgacaagttgatggaacaacttgaaaattcttctgtttcctctataagcggacaagatggcatcgatgaggaagttattcagtcgaacatggatgatagggttcctgtggaaatctcaatggacacaaatgcaggttccacaagttatgatgcagacactccacatattgaccaacaccaggaacgtttgtatggtggccctaatgctcttagccgaggtagtcgtgggacacatactagcacgactcggagtgccataagcaagcatcttgacgtagaggagcttgaaatgctcctagaagcatactttgttcaaattgacggtacattgaataaactgaacactctacgtgagtatgtggatgacacagaagactacatcaacatcatgctggatgacaagcagaaccatctgttgcaaatgggagtcatgttaacaacggcaactcttgtggttagcgcctttgttgttgtggctggaattttcggtatgaacattaacattgaactgttcgacgagaaaaaagctgggatgccggaattcttatggacaattggtggtggtgccactggcagtctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="96567" stop="89878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96275" g_stop="96150" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96149" i_stop="95552" i_length="598">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95551" g_stop="95391" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="287" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95390" i_stop="94470" i_length="921">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94469" g_stop="94223" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="534" r_length="247" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94222" i_stop="90412" i_length="3811">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90411" g_stop="90177" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="769" r_length="235" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E690700" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96275" e_stop="96150"/>
          <exon e_start="95551" e_stop="95391"/>
          <exon e_start="94469" e_stop="94223"/>
          <exon e_start="90411" e_stop="90177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACACTGGAGCAAGAAGCTCATCCTGCTTTAGATAAGCTGACTTCAAAGATTAGTACTCTCAACTTGGAACGTGTTCGTCAAATCAAAAGTCGCTTGGTTGCTATTACAGGACGTGTTCAGAAGGTATACATTAGATAAAGTTTCTTTATCTCTCAGTACGCTAGCGGTCTTGGTTAACTTTTCCTAAATAATTCATGAGAAACCTAGCAGTGGATCAAATATTTGAGATGCTAACTTTGTCGGTATATTTTATGCTTTTGACACTGAAACGGTCTACTCAGTCTTAATCTTTTTCTACAATTCCACACAAATCTCAAGGCATGAAAATTAGGATGGTAAATGACAACATTAATGACATTCATTTATGGAATGCGATTCCATTGAAGTTTATGTATGTGTATATATCTTTAGAAAGGCTGATACTCAGAAAAATAACTTTTCCCTGTTAGAAGGTCAACATGTACTAATATAGTTTTCTAGCAAGTGTTTCACACGTACCATCTATTAGATGGTTTAGTTTTGAGGCACTGCTGTTATAGTCTGCAAATTGCTTGTAGATCTAAGCCTCAAAATTGATCTCTAGCATTACTCTTAAGAGAATACTTGATAGACAAAGGGTTACAAAATGAACTACTATGTTCCTTTTCTTTTTGAGTGATTGCTCTGAAATGTGCTATCCACAAATTTTTTGGTACTCAAATCTGCATTTCTTCATTGTTAGGTGAGAGATGAACTGGAGCATCTACTCGATGATGATGAAGATATGGCGGAGATGTATTTAACTGACAAGCTGATGGAACAACTTGAAAATTCTTCTGTTTCCTCTATAAGCGGACAAGATGGCATCGATGAGGAAGTTATTCAGTCGAACATGGATGATAGGTATGTCATATATTTCTGATGTCTTATCCTCCCCCTTGTGTTTCAGGACCTCTATATTTGTAAACTAGAAGGATCTCCCTTAGTCTGTCATCAACATGTTGAGCCTAAGCAGTTTAATTTCAAAAATTTTCTTGGAAAATGGTTGCATTTATAGATAACTTGCATTTGGGAGAAGCCAGGATGGCCTGTCATGACAATATATTATCCATTAGTGCTACTTTATCCACATCTTCTCTGCCCTTCAAACAGATGATAAAAAATCTTTGGAGAAGCTGAATCTCAATTATTCACCACTATCTGGATCTCCAGTCTGCAGTCTCTTTCCCTGCTTCATTTTACTTTTAGAGTTTTTGCACAATTGTATGAATAGCTAAAAAAGAAAATCTTTTGAGCACCAATAGAGTCAATACCTTTATTCTCATTACTATTTATAGTTGATCTGATGTGCCAGCAGAGTAAAGTATGCACACATTTGTTAATGCTACTTCCATCTGCTGAGATGCTATTGGTCCTTTATTTTCTGAAGAATAAAAAGAGATACACTATCGGTTCTATAGTGTGTTTGTCTTTGTCTTTGTTATGTTGTTTCATCATCTACATCTGACCACATTGAGCTTGTGAATTAATGTGTCATGCCTCGCCCTGAATGAGCGTCCCTGCAGATATTACTGCCTTATAACTCTTCTCTATCAAGCCGAATGGATCCCAGAGTCTGGGAAAATGTGACTAGTGTGGAGGATTTTCTTGACTGTTAAAACAATGCTAGTATGATGAACTTTTCTTCAAATCTGGTCTTGGATACTGAGACAACTACTGATCAAATGCTATTTAAAAATGCTTTTGCGCAATCCTGAGAGGTGTCGGTGATGTCGATCAGTGTTTCTATGTTATTCCTAAAATTCAAGCTATTTGATATGTCAGGGTTCCTGTGGAAATCTCAATGGACGCAAATGCAGGTTCCACAAGTTATGATGCAGACACTCCACATATTGACCAACACCAGGAACGTTTGTATGGTGGCCCTAATGCTCTTAGCCGAGGTAGTCGTGGGACACATACTAGCACGACTCGGAGTGCCATAAGCAAGCATCTTGATGTAGAGGAGCTTGAAATGCTCCTAGAAGCATACTTTGTTCAAATTGACGGTACATTGAATAAACTGAACACTGTGAGTGATCTTTCTAGATAATTGAATTACTCTGACAAGTATATAGATTGTTAGTTTAGCTTCAAGACATTTATAAGACTCATTTTGCAATCTATGAAAAGAATGCTTTACACAAAATAATTTGGACTAGACTTGTAAAAGTTGTCTAATATTATTTCATATTTTGGGATGGAACCTTGCTGTTTGTAGCTAACAATGATTAGTGGGTGCACAATTGATGCATTAAATACTCATCTAGATGCTTGACCCATTTTAAATAGTTGCATGAATTGCCTTGCCAATATCATTGCATCAATTAAGGGGCTGATTTACTAAGGTAAAACTCCCGTAGACTATTTAATTTTTTTGACAAAGAGTTCGTAAAACTTCAACTATCATGTTATTGGACGTGTATTTGTACTATTATGTGCATATATGTCAATGCGACTACTTCCATTTTTTGAGGTTGAAAGGATATAGGATAAAATTCGACTACTTCCATCAAAAGCCTACAAGTGTTACTTGAACTGTTGATTTTATAGAAATTTTATTTAGCTGAGTTTCCACTTATTGATATTCCATTTTCTCTATAACCACACTAGGGAAAATCCTTGTCTATCAAAAAGTAGAGAATTTTGATAAATATTTGGCTCTCTACCATCTCAGCAATCACCTATGCCGATTGGAATTTCATGGTTAGACTGAAAATTAGCAAAATAATAAAACGAAAAATAAAGCAAGAATCTTCCAAAATTTATGCAAAAGAGTTTTTCTTCCATTCGAAGACTCTCGGGTTACATTTCCATTCAAATTTAAATGAGTGTTGAAGGGACTACTCCCCAAGCCCCAGTTTTATTTTACTTAATGATTAGGACTAATTGATGTAGACAGAAATCGAAAGTACAATTGCTATTCCAATTTTATTTGCGTAACTCATGATTGCTTGACTGAAAATAGGTCTGATCATCTAAAACGACTAGCTTTGTCGCACAAAACATAGGATTAGGGCGGCTAACGCAATTTTGGATCAACTGTGGAAATTTGATGGGCATTTTGAGAGAATACGGTAAAGTTTTGCAGAGAGATAGATCCATGCCCTGTTACATCCAACTTAAGTTACCAGCTTTTGTATTTTTGTGTGTAGGATTCATAAGGGTTGTGATCTAAGCACACTTTTGTGCATGTCCACTCTCACTGATATATAACCACATGCCTGTGGGCCTTAACTAAAAGAGGAAAATGGCAGAAAGATAAGGGGCCTAAAGTGCCATTTATGGTTCTCTTGGGATGAGGAGTGTTTTGTTGTACGTGTGGTGTGCCTTTTAGAGGAATTGAATTTTAAGGCTTTATATTGATGGTAGTTGGTAGGACAACAATGATTTTCCCCATACTTTCTTGATTCCTATCTAACCATAAAATTTATTTAAAGAACCAAAAAACCTAATCATCTCCTTTTCTTTTGCTTTTAATAACTGTGGTGTGTGGTGTCCGAGGCCAACTTGTGCGCACCTCGACTAATTCCGTGGGATACCTTCCTCTTCTCCTATTTGTATCCATGTTTTTTGTCTTTACTCCTATTCATTATTTTTTGCTTTTTTATTTTCCTTCCCTTCTTTTATTTGTGTTATTGTAATGACCATTTAAGCGTACAATTGGTAACATTAATCTTTTTTATACCAAATAATAGTGATTTCATCCATGGGGCAGAATGTGGATTCACTATTTTCTTACTTTTTAAATCCAATATTACCTGATAATGAGAGTATGAAAAGTTGAAAAAGAAACTGAAAAACAGTTAGATTGAGAATATTCTTATGTCCCAACTTCTTTAAAACAGGATAAGATACTCTATTATCACACTCACAGAGTTATTATGAACTTGAATTTTAGAACAAATGGTTTGAGACTCTTATTTTGATTTCTTGAGCTGGGAGAACTATGATTTGGGTTCTGATACCAGGCAGCCCGGTGTATGAAGCATACAACATTTTTCTTAGTGTTAGGTAGTGGTGGAGCGGAAATTTGTACAATTCTGAGGTCCTTTTTGTCTCTGTTCTCCACCAACTTTATAGGTCTGATCATCTAAAAAGACTAGCTTTATCGCACCAAACTTAGGAGTAGGGAGATTAATGTAATTTTGGGTCCTGTCCATTGAGGGGCATTTGTAATTAGAGGGAGCCTCATGTTAAACTAGGATGCTCATGGCAATAGTTGATTTGCATGCCACCAGAGTGGCCGTTTTCCAGAGAGAGAAAAAGTGAAAGAGGTTGGAGGATAGAATGAGAGGAGAAAACGAAAGCTTCAAAGTTGAAGAAATCTCCTACAAACCATCTAGACATCTATGCAAATGTATAGATACACAGCTTTATCTGCACTATCCAAAAATAATTTTCTGATCATATAAATAAATTAATGATGTCCACCAGACATCTCATATTCAACTTGGGTTATTTGTAATTAGCTCCAAAATGAAGTAGTTGAGGTATGGTATTAGAGCAAATGAAGGTAGTGGTTCCCAAACTTAATGGTGTAGTGAGGAATGAGAGGGAGCACAATGGGGTCACCCTAGCTTTAGAAGGATGAGACTCCGCTGCAAATCTACTATTCATTTATAGAGAAGGATGTTCAAGAAAATGTGCTATAATTCTTCAAAGAGGATTTAAGAAAAAGGAACAGATACAGGCTGTGATTGTGAAGCCCTGATAAAAACAGGGAACAGATCTTTAGATAGGTTGATTTTTTGAAGTCTGTCCAATCCAAACTTTTTAATTAAGTGAAGTTCTGTTCTTAATAATATTTTTGTCCTCCGCTGACCAACAGTTAATTTTGAAATTATGTCCCCATAGTTGTGCACCTCTTGAAATTTGCTTCTGGAAGGATTTGGACAGTATTATCAATTTCTGTTGATACATTAAAATATATGTATCAGTTGTATGGCTAGCTCTCTTATCGCAAGAGAGTATATAATGGTTAAATATAGAGCCAGAAGTATGTTCTCGAATGGAATCTTTAATGAAGTGTAGCTTGCAGAGAAACTAAGAACCTGACGACCAACCAAGCTTCAGAATTTAGACAATTACCTTAGCAATCAAATGGCATTTGATTCTGATACATTTACCAGAAGAAGAAATCACATCAGTAAGATTATGCATTCTAATTTCTTTGTGTGAGCAACAATGCTAAGTTTTCACATGGAACAGAAAGTAAAAGGTGAATCTTTATCAATTAACATTTAAAGAAACTATAAACTAAAAGCTGCATCATGGCCTAGTTATAATTAAGTTTATCAAGAAAGAATTTTGTTGTATTTAGAGGAAGAAGAAGACCTCGGTTATGCAGATACCTTAAAGATTTAGGTTTATGACTGTAGCATCCAGTACACCATTTCAGAATAATTTTGCATCACCATTTCACATGTGCATTATTAATGATACAACCTAGGTGATGATGCACTGCATTCTTCTATTTGTCATCTCTATTTTGCATCCTAGTTTGACTTTCTCTAGCTATTCCCTTTCTCAGTTAATTTTATCTGACTTTTCAAAGCTCAGATAATAGATGAAAAGTAATGTTGGATAAAAACCACTGCATGTGGGTTGTAATTGCAAATAATGACATTGATTTTGGAATAGCATTATCAGAGATGAAGTTCAATCACACAAGTCAAATTTGGACATGAACTGTTGTTCTATTACCTACTTGCTATATAAATGTCTTTTGTTTTCACCTAAACCAGATTCAATGTTAACTACTTTGTATACATGGATGCTGAACTTTAGTTTGTTCCACTGTTGTGATCTCTCTCTTTTGAATCTGTTTTAATTTTCTTCAGCTACGTGAATATGTGGATGACACAGAAGACTACATCAACATCATGCTGGATGACAAGCAGAACCATCTGTTGCAAATGGGAGTCATGTTAACAACGGCAACTCTTGTGGTTAGCGCCTTTGTTGTTGTGGCTGGAATTTTCGGTATGAACATTAACATTGAACTGTTCGACGAGAAAAAAGCTGGGATGCCAGAATTCTTATGGACAATCGGTGGTGGTGCCACTGGCAGTCTCT</genome_strand>
        <mrna_strand>CCTTTAAAGGAGCAAGAAGCTCATCCTGCTTTAGATAAGCCCTTTTCAAAGATTAGTACTCTCAACTTGGAACGTGTTCGTCAAATCAAAAGTCGCTTGGTTGCTATTACAGGACGTGTTCAGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAGATGAACTGGAGCATCTACTCGATGATGATGAAGATATGGCGGAGATGTATTTAACTGACAAGTTGATGGAACAACTTGAAAATTCTTCTGTTTCCTCTATAAGCGGACAAGATGGCATCGATGAGGAAGTTATTCAGTCGAACATGGATGATAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCCTGTGGAAATCTCAATGGACACAAATGCAGGTTCCACAAGTTATGATGCAGACACTCCACATATTGACCAACACCAGGAACGTTTGTATGGTGGCCCTAATGCTCTTAGCCGAGGTAGTCGTGGGACACATACTAGCACGACTCGGAGTGCCATAAGCAAGCATCTTGACGTAGAGGAGCTTGAAATGCTCCTAGAAGCATACTTTGTTCAAATTGACGGTACATTGAATAAACTGAACACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGTGAGTATGTGGATGACACAGAAGACTACATCAACATCATGCTGGATGACAAGCAGAACCATCTGTTGCAAATGGGAGTCATGTTAACAACGGCAACTCTTGTGGTTAGCGCCTTTGTTGTTGTGGCTGGAATTTTCGGTATGAACATTAACATTGAACTGTTCGACGAGAAAAAAGCTGGGATGCCGGAATTCTTATGGACAATTGGTGGTGGTGCCACTGGCAGTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235904" ref_strand="+" ref_description="SGN-E235904 [cLED-16-O12]">
      <seq>tgatctggaagagcctcagtctgaagaagtttcacctccgaacgtctctgcaaacttccaatcaatggatgagaacaagtctgatgggaagcagctaacgggtgagaatcgagatgggccgaagcttctcccttttgagtttgttgctttggaggcatgtctggaggctgcttgcagttgcttggataatgaggcaaggacactggagcaagaagctcatcctgctttagataagctgacttcaaagattagtactctcaacttggaacgtgttcgtcaaatcaaaagtcgcttggttgctattacaggacgtgttcagaaggtgagagatgaactggagcatctactcgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="96919" stop="95218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96619" g_stop="96427" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96426" i_stop="96279" i_length="148">
            <donor d_prob="0.225" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96278" g_stop="96150" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="322" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96149" i_stop="95552" i_length="598">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95551" g_stop="95518" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="356" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E235904" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96619" e_stop="96427"/>
          <exon e_start="96278" e_stop="96150"/>
          <exon e_start="95551" e_stop="95518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTGGAAGAGCCTCAGTCTGAAGAAGTTTCACCTCCGAACGTCTCTGCAAACTTCCAATCAATGGATGAGAACAAGTCTGATGGGAAGCAGCTAACGGGTGAGAATCGAGATGGGCCGAAGCTTCTCCCTTTTGAGTTTGTTGCTTTGGAGGCATGTCTGGAGGCTGCTTGCAGTTGCTTGGATAATGAGGTGGAGCATAATTCTATTGCTTTAATCAAATGTGCCAAACACTGTTACAGGGCTTAATTGGGCTGTTTGAGTTGGTTAATTATCACTGTATTGTTGCTCATTTTTGCCGTCTTTCTGGTCTTTGTTTTTGTGGTTCTTTCTCAAGCAGGCAAGGACACTGGAGCAAGAAGCTCATCCTGCTTTAGATAAGCTGACTTCAAAGATTAGTACTCTCAACTTGGAACGTGTTCGTCAAATCAAAAGTCGCTTGGTTGCTATTACAGGACGTGTTCAGAAGGTATACATTAGATAAAGTTTCTTTATCTCTCAGTACGCTAGCGGTCTTGGTTAACTTTTCCTAAATAATTCATGAGAAACCTAGCAGTGGATCAAATATTTGAGATGCTAACTTTGTCGGTATATTTTATGCTTTTGACACTGAAACGGTCTACTCAGTCTTAATCTTTTTCTACAATTCCACACAAATCTCAAGGCATGAAAATTAGGATGGTAAATGACAACATTAATGACATTCATTTATGGAATGCGATTCCATTGAAGTTTATGTATGTGTATATATCTTTAGAAAGGCTGATACTCAGAAAAATAACTTTTCCCTGTTAGAAGGTCAACATGTACTAATATAGTTTTCTAGCAAGTGTTTCACACGTACCATCTATTAGATGGTTTAGTTTTGAGGCACTGCTGTTATAGTCTGCAAATTGCTTGTAGATCTAAGCCTCAAAATTGATCTCTAGCATTACTCTTAAGAGAATACTTGATAGACAAAGGGTTACAAAATGAACTACTATGTTCCTTTTCTTTTTGAGTGATTGCTCTGAAATGTGCTATCCACAAATTTTTTGGTACTCAAATCTGCATTTCTTCATTGTTAGGTGAGAGATGAACTGGAGCATCTACTCGATGATG</genome_strand>
        <mrna_strand>TGATCTGGAAGAGCCTCAGTCTGAAGAAGTTTCACCTCCGAACGTCTCTGCAAACTTCCAATCAATGGATGAGAACAAGTCTGATGGGAAGCAGCTAACGGGTGAGAATCGAGATGGGCCGAAGCTTCTCCCTTTTGAGTTTGTTGCTTTGGAGGCATGTCTGGAGGCTGCTTGCAGTTGCTTGGATAATGAG....................................................................................................................................................GCAAGGACACTGGAGCAAGAAGCTCATCCTGCTTTAGATAAGCTGACTTCAAAGATTAGTACTCTCAACTTGGAACGTGTTCGTCAAATCAAAAGTCGCTTGGTTGCTATTACAGGACGTGTTCAGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAGATGAACTGGAGCATCTACTCGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709668" ref_strand="+" ref_description="SGN-E709668 [FA52DA03]">
      <seq>attctattaaattatgaggggcgttactccgccgcagaagttttccgttccgtcgccggacgatgacgccgatataatccgacccaacaccgtcatccccggcggcgtaaccgtgggcgctgctatgcgaaagaaggccaccggggtacgttcatggcttctgttggattcaactggacagacccaagttgtggaagccgggaaacatgcaattatgcggcggactggacttccggctcgtgatcttcgcatattggacccacttctctcgtatccatctactgtgttgggtcgtgaacgggctatcgtcatcaatttggagcatatcaaggctattattaccgcccaggaagtcctcttgctcaacgctagggatccctctgttgctccttttgttgaagaggttcaacggagaattttgcgtcatcaccaagctaccaagtcccaggaagctggagggggtggcaataatgcagactggacaaatctgtatgatctggaagagcctcagtctgaagaagtttcacctccgaacgtctctgcaaacttccaatcaatggatgagaacaagtctgatgggaagcagctaacgggtgagaatcgagatgggccgaagcttctcccttttgagtttgttgctttggaggcatgtctggaggctgcttgcagttgcttggataatgaggcaaggacactggagcaagaagctcatcctgctttagataagctgacttcaaagattagtactctcaacttggaacgtgttcgtcaaatcaaaagtcgcttggttgctattacaggacgtgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="98446" stop="95855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98146" g_stop="97699" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97698" i_stop="96664" i_length="1035">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96663" g_stop="96427" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="685" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96426" i_stop="96279" i_length="148">
            <donor d_prob="0.225" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96278" g_stop="96155" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="809" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E709668" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98146" e_stop="97699"/>
          <exon e_start="96663" e_stop="96427"/>
          <exon e_start="96278" e_stop="96155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTATTAAATTATGAGGGGCGTTACTCCGCCGCAGAAGTTTTCCGTTCCGTCGCCGGACGATGACGCCGATATAATCCGACCCAACACCGTCATCCCCGGCGGCGTAACCGTGGGCGCTGCTATGCGAAAGAAGGCCACCGGGGTACGTTCATGGCTTCTGTTGGATTCAACTGGACAGACCCAAGTTGTGGAAGCCGGGAAACATGCAATTATGCGGCGGACTGGACTTCCGGCTCGTGATCTTCGCATATTGGACCCACTTCTCTCGTATCCATCTACTGTGTTGGGTCGTGAACGGGCTATCGTCATCAATTTGGAGCATATCAAGGCTATTATTACCGCCCAGGAAGTCCTCTTGCTCAACGCTAGGGATCCCTCTGTTGCTCCTTTTGTTGAAGAGGTTCAACGGAGAATTTTGCGTCATCACCAAGCTACCAAGTCCCAGGTTATTTTCTTAATTTTATATGCTGATGAATGATCAATTTCTGATGCTTTAGTAGGTATAGATCATGTAAACAACCCCAATAAAATGTATGGATAATAGTTATCTGAATTTTATCCAAATGATTTCGTACCCAACAGAGGGAGTGGATATAGAAGATTCATATAACCAATCCAACTCAAAATGACTTCTTTTCACATTTTGATGCTTTGGGGGTATTTAATCGATTATGTGTGTTTCTCTTCTTAGTATTTAGTTGATGAAATTGTAAAATGTCGAATCTTAACTTTTATACTTGTAGTTTGTACATTGCTAGTTTAACCTTCTGTAGGCTCTTGGATATTGTCATGTTTGAAATTCTCTGTTCAAAATTACTGGTTTTCTATTTTCATGATTATGCTACTGCTGTTAAAAGTTGCATTATACTCCACTCCATATGTATACCTTTTTCTTAATGATGGTGGTGTTTCGGCCCACTTAAACACACTTTATCTAATCAACCGGAGTCTGCTACTGCTTACAAAGGTTAGACCTGAGTTGGATTCTTTGGATCTAGGTTGTTACACGTGTGCCTCAACTGCTCTATCATTTCGGGGGATCCATGTTGAAAGCCATAGTGTTGATACCTAATGCCGCAAACCAGTTACCCACTACAGGCCAAGAGTCAAAGTCCCTTTTTTGTTTTATTTTAGATTTAGAAAAAAAAAATAAGAAATTTGTATTTATACCATCTAGCAGAAGCTTCAAGTTTAACGATTTTTGCCTTCTCATTTTGGTTTAAAATAGACTTCTTTTTTGCATCTTCAGTTTAATGCCTAAAATTTTAGATTTTATGACGACCTATGTCAATGTATAGTCACTTGTGGCCTGTGGGACTATACTGGGTATGTTATTGTTGTATGACCTATCTCAATTTGGATAACTTGTTGTGCTTCAAACTTAACTTTGTACTTATATCTGCTTTAATATGGGAGGAGGGGGGAGGACTACTAGGGGTTGTGATAATTGATCTGATAAAACTGTTGTAATTGTGAAAAGGAAGCTGGAGGGGGTGGCAATAATGCAGACTGGACAAATCTGTATGATCTGGAAGAGCCTCAGTCTGAAGAAGTTTCACCTCCGAACGTCTCTGCAAACTTCCAATCAATGGATGAGAACAAGTCTGATGGGAAGCAGCTAACGGGTGAGAATCGAGATGGGCCGAAGCTTCTCCCTTTTGAGTTTGTTGCTTTGGAGGCATGTCTGGAGGCTGCTTGCAGTTGCTTGGATAATGAGGTGGAGCATAATTCTATTGCTTTAATCAAATGTGCCAAACACTGTTACAGGGCTTAATTGGGCTGTTTGAGTTGGTTAATTATCACTGTATTGTTGCTCATTTTTGCCGTCTTTCTGGTCTTTGTTTTTGTGGTTCTTTCTCAAGCAGGCAAGGACACTGGAGCAAGAAGCTCATCCTGCTTTAGATAAGCTGACTTCAAAGATTAGTACTCTCAACTTGGAACGTGTTCGTCAAATCAAAAGTCGCTTGGTTGCTATTACAGGACGTGTTC</genome_strand>
        <mrna_strand>ATTCTATTAAATTATGAGGGGCGTTACTCCGCCGCAGAAGTTTTCCGTTCCGTCGCCGGACGATGACGCCGATATAATCCGACCCAACACCGTCATCCCCGGCGGCGTAACCGTGGGCGCTGCTATGCGAAAGAAGGCCACCGGGGTACGTTCATGGCTTCTGTTGGATTCAACTGGACAGACCCAAGTTGTGGAAGCCGGGAAACATGCAATTATGCGGCGGACTGGACTTCCGGCTCGTGATCTTCGCATATTGGACCCACTTCTCTCGTATCCATCTACTGTGTTGGGTCGTGAACGGGCTATCGTCATCAATTTGGAGCATATCAAGGCTATTATTACCGCCCAGGAAGTCCTCTTGCTCAACGCTAGGGATCCCTCTGTTGCTCCTTTTGTTGAAGAGGTTCAACGGAGAATTTTGCGTCATCACCAAGCTACCAAGTCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGGAGGGGGTGGCAATAATGCAGACTGGACAAATCTGTATGATCTGGAAGAGCCTCAGTCTGAAGAAGTTTCACCTCCGAACGTCTCTGCAAACTTCCAATCAATGGATGAGAACAAGTCTGATGGGAAGCAGCTAACGGGTGAGAATCGAGATGGGCCGAAGCTTCTCCCTTTTGAGTTTGTTGCTTTGGAGGCATGTCTGGAGGCTGCTTGCAGTTGCTTGGATAATGAG....................................................................................................................................................GCAAGGACACTGGAGCAAGAAGCTCATCCTGCTTTAGATAAGCTGACTTCAAAGATTAGTACTCTCAACTTGGAACGTGTTCGTCAAATCAAAAGTCGCTTGGTTGCTATTACAGGACGTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730075" ref_strand="+" ref_description="SGN-E730075 [LA22DH10]">
      <seq>attaaattatgaggggcgttactccgccgcagaagttttccgttccgtcgccggacgatgacgccgatataatccgacccaacaccgtcatccccggcggcgtaaccgtgggcgctgctatgcgaaagaaggccaccggggtacgttcatggcttctgttggattcaactggacagacccaagttgtggaagccgggaaacatgcaattatgcggcggactggacttccggctcgtgatcttcgcatattggacccacttctctcgtatccatctactgtgttgggtcgtgaacgggctatcgtcatcaatttggagcatatcaaggctattattaccgcccaggaagtcctcttgctcaacgctagggatccctctgttgctccttttgttgaagaggttcaacggagaattttgcgtcatcaccaagctaccaagtcccaggaagctggagggggtggcaataatgcagactggacaaatctgtatgatctggaagagcctcagtctgaagaagtttcacctccgaacgtctctgcaaacttccaatcaatggatgagaacaagtctgatgggaagcagctaacgggtgagaatcgagatgggccgaagcttctcccttttgagtttgttgctttggaggcatgtctggaggctgcttgcagttgcttggataatgaggcaaggacactggagcaagaagctcatcctgctttagataagctgacttcaaagattagtactctcaacttggaacgtgttcgtcaaatcaaaagtcgcttggttgctattacaggacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="98441" stop="95859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98141" g_stop="97699" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97698" i_stop="96664" i_length="1035">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96663" g_stop="96427" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="680" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96426" i_stop="96279" i_length="148">
            <donor d_prob="0.225" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96278" g_stop="96159" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="800" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E730075" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98141" e_stop="97699"/>
          <exon e_start="96663" e_stop="96427"/>
          <exon e_start="96278" e_stop="96159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAATTATGAGGGGCGTTACTCCGCCGCAGAAGTTTTCCGTTCCGTCGCCGGACGATGACGCCGATATAATCCGACCCAACACCGTCATCCCCGGCGGCGTAACCGTGGGCGCTGCTATGCGAAAGAAGGCCACCGGGGTACGTTCATGGCTTCTGTTGGATTCAACTGGACAGACCCAAGTTGTGGAAGCCGGGAAACATGCAATTATGCGGCGGACTGGACTTCCGGCTCGTGATCTTCGCATATTGGACCCACTTCTCTCGTATCCATCTACTGTGTTGGGTCGTGAACGGGCTATCGTCATCAATTTGGAGCATATCAAGGCTATTATTACCGCCCAGGAAGTCCTCTTGCTCAACGCTAGGGATCCCTCTGTTGCTCCTTTTGTTGAAGAGGTTCAACGGAGAATTTTGCGTCATCACCAAGCTACCAAGTCCCAGGTTATTTTCTTAATTTTATATGCTGATGAATGATCAATTTCTGATGCTTTAGTAGGTATAGATCATGTAAACAACCCCAATAAAATGTATGGATAATAGTTATCTGAATTTTATCCAAATGATTTCGTACCCAACAGAGGGAGTGGATATAGAAGATTCATATAACCAATCCAACTCAAAATGACTTCTTTTCACATTTTGATGCTTTGGGGGTATTTAATCGATTATGTGTGTTTCTCTTCTTAGTATTTAGTTGATGAAATTGTAAAATGTCGAATCTTAACTTTTATACTTGTAGTTTGTACATTGCTAGTTTAACCTTCTGTAGGCTCTTGGATATTGTCATGTTTGAAATTCTCTGTTCAAAATTACTGGTTTTCTATTTTCATGATTATGCTACTGCTGTTAAAAGTTGCATTATACTCCACTCCATATGTATACCTTTTTCTTAATGATGGTGGTGTTTCGGCCCACTTAAACACACTTTATCTAATCAACCGGAGTCTGCTACTGCTTACAAAGGTTAGACCTGAGTTGGATTCTTTGGATCTAGGTTGTTACACGTGTGCCTCAACTGCTCTATCATTTCGGGGGATCCATGTTGAAAGCCATAGTGTTGATACCTAATGCCGCAAACCAGTTACCCACTACAGGCCAAGAGTCAAAGTCCCTTTTTTGTTTTATTTTAGATTTAGAAAAAAAAAATAAGAAATTTGTATTTATACCATCTAGCAGAAGCTTCAAGTTTAACGATTTTTGCCTTCTCATTTTGGTTTAAAATAGACTTCTTTTTTGCATCTTCAGTTTAATGCCTAAAATTTTAGATTTTATGACGACCTATGTCAATGTATAGTCACTTGTGGCCTGTGGGACTATACTGGGTATGTTATTGTTGTATGACCTATCTCAATTTGGATAACTTGTTGTGCTTCAAACTTAACTTTGTACTTATATCTGCTTTAATATGGGAGGAGGGGGGAGGACTACTAGGGGTTGTGATAATTGATCTGATAAAACTGTTGTAATTGTGAAAAGGAAGCTGGAGGGGGTGGCAATAATGCAGACTGGACAAATCTGTATGATCTGGAAGAGCCTCAGTCTGAAGAAGTTTCACCTCCGAACGTCTCTGCAAACTTCCAATCAATGGATGAGAACAAGTCTGATGGGAAGCAGCTAACGGGTGAGAATCGAGATGGGCCGAAGCTTCTCCCTTTTGAGTTTGTTGCTTTGGAGGCATGTCTGGAGGCTGCTTGCAGTTGCTTGGATAATGAGGTGGAGCATAATTCTATTGCTTTAATCAAATGTGCCAAACACTGTTACAGGGCTTAATTGGGCTGTTTGAGTTGGTTAATTATCACTGTATTGTTGCTCATTTTTGCCGTCTTTCTGGTCTTTGTTTTTGTGGTTCTTTCTCAAGCAGGCAAGGACACTGGAGCAAGAAGCTCATCCTGCTTTAGATAAGCTGACTTCAAAGATTAGTACTCTCAACTTGGAACGTGTTCGTCAAATCAAAAGTCGCTTGGTTGCTATTACAGGACGT</genome_strand>
        <mrna_strand>ATTAAATTATGAGGGGCGTTACTCCGCCGCAGAAGTTTTCCGTTCCGTCGCCGGACGATGACGCCGATATAATCCGACCCAACACCGTCATCCCCGGCGGCGTAACCGTGGGCGCTGCTATGCGAAAGAAGGCCACCGGGGTACGTTCATGGCTTCTGTTGGATTCAACTGGACAGACCCAAGTTGTGGAAGCCGGGAAACATGCAATTATGCGGCGGACTGGACTTCCGGCTCGTGATCTTCGCATATTGGACCCACTTCTCTCGTATCCATCTACTGTGTTGGGTCGTGAACGGGCTATCGTCATCAATTTGGAGCATATCAAGGCTATTATTACCGCCCAGGAAGTCCTCTTGCTCAACGCTAGGGATCCCTCTGTTGCTCCTTTTGTTGAAGAGGTTCAACGGAGAATTTTGCGTCATCACCAAGCTACCAAGTCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGGAGGGGGTGGCAATAATGCAGACTGGACAAATCTGTATGATCTGGAAGAGCCTCAGTCTGAAGAAGTTTCACCTCCGAACGTCTCTGCAAACTTCCAATCAATGGATGAGAACAAGTCTGATGGGAAGCAGCTAACGGGTGAGAATCGAGATGGGCCGAAGCTTCTCCCTTTTGAGTTTGTTGCTTTGGAGGCATGTCTGGAGGCTGCTTGCAGTTGCTTGGATAATGAG....................................................................................................................................................GCAAGGACACTGGAGCAAGAAGCTCATCCTGCTTTAGATAAGCTGACTTCAAAGATTAGTACTCTCAACTTGGAACGTGTTCGTCAAATCAAAAGTCGCTTGGTTGCTATTACAGGACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547675" ref_strand="+" ref_description="SGN-E547675 [TUS-71-K21]">
      <seq>ctattaaattatgaggggcgttactccgccgcagaagttttccgttccgtcgccggacgatgacgccgatataatccgacccaacaccgtcatccccggcggcgtaaccgtgggcgctgctatgcgaaagaaggccaccggggtacgttcatggcttctgttggattcaactggacagacccaagttgtggaagccgggaaacatgcaattatgcggcggactggacttccggctcgtgatcttcgcatattggacccacttctctcgtatccatctactgtgttgggtcgtgaacgggctatcgtcatcaatttggagcatatcaaggctattattaccgcccaggaagtcctcttgctcaacgctagggatccctctgttgctccttttgttgaagaggttcaacggagaattttgcgtcatcaccaagctaccaagtcccaggaagctggagggggtggcaataatgcagactggacaaatctgtatgatctggaagagcctcagtctgaagaagtttcacctccgaacgtctctgcaaacttccaatcaatggatgagaacaaggctgatgggaagcagctaacgggtgagaatcgagatgggccgaagcttctcccttttgagtttgttgctttggaggcatgtctggaggctgcttgcagttgcttggataatgaggcaaggacactggagcaagaagctcatcctgctttagataagctgacttcaaagattagtactctcaacttggaacgtgttcgtcaaatcaaaagtcgcttggttgctattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="98443" stop="95866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98143" g_stop="97699" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97698" i_stop="96664" i_length="1035">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96663" g_stop="96427" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="682" r_length="237" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96426" i_stop="96279" i_length="148">
            <donor d_prob="0.225" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96278" g_stop="96166" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="795" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E547675" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98143" e_stop="97699"/>
          <exon e_start="96663" e_stop="96427"/>
          <exon e_start="96278" e_stop="96166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTAAATTATGAGGGGCGTTACTCCGCCGCAGAAGTTTTCCGTTCCGTCGCCGGACGATGACGCCGATATAATCCGACCCAACACCGTCATCCCCGGCGGCGTAACCGTGGGCGCTGCTATGCGAAAGAAGGCCACCGGGGTACGTTCATGGCTTCTGTTGGATTCAACTGGACAGACCCAAGTTGTGGAAGCCGGGAAACATGCAATTATGCGGCGGACTGGACTTCCGGCTCGTGATCTTCGCATATTGGACCCACTTCTCTCGTATCCATCTACTGTGTTGGGTCGTGAACGGGCTATCGTCATCAATTTGGAGCATATCAAGGCTATTATTACCGCCCAGGAAGTCCTCTTGCTCAACGCTAGGGATCCCTCTGTTGCTCCTTTTGTTGAAGAGGTTCAACGGAGAATTTTGCGTCATCACCAAGCTACCAAGTCCCAGGTTATTTTCTTAATTTTATATGCTGATGAATGATCAATTTCTGATGCTTTAGTAGGTATAGATCATGTAAACAACCCCAATAAAATGTATGGATAATAGTTATCTGAATTTTATCCAAATGATTTCGTACCCAACAGAGGGAGTGGATATAGAAGATTCATATAACCAATCCAACTCAAAATGACTTCTTTTCACATTTTGATGCTTTGGGGGTATTTAATCGATTATGTGTGTTTCTCTTCTTAGTATTTAGTTGATGAAATTGTAAAATGTCGAATCTTAACTTTTATACTTGTAGTTTGTACATTGCTAGTTTAACCTTCTGTAGGCTCTTGGATATTGTCATGTTTGAAATTCTCTGTTCAAAATTACTGGTTTTCTATTTTCATGATTATGCTACTGCTGTTAAAAGTTGCATTATACTCCACTCCATATGTATACCTTTTTCTTAATGATGGTGGTGTTTCGGCCCACTTAAACACACTTTATCTAATCAACCGGAGTCTGCTACTGCTTACAAAGGTTAGACCTGAGTTGGATTCTTTGGATCTAGGTTGTTACACGTGTGCCTCAACTGCTCTATCATTTCGGGGGATCCATGTTGAAAGCCATAGTGTTGATACCTAATGCCGCAAACCAGTTACCCACTACAGGCCAAGAGTCAAAGTCCCTTTTTTGTTTTATTTTAGATTTAGAAAAAAAAAATAAGAAATTTGTATTTATACCATCTAGCAGAAGCTTCAAGTTTAACGATTTTTGCCTTCTCATTTTGGTTTAAAATAGACTTCTTTTTTGCATCTTCAGTTTAATGCCTAAAATTTTAGATTTTATGACGACCTATGTCAATGTATAGTCACTTGTGGCCTGTGGGACTATACTGGGTATGTTATTGTTGTATGACCTATCTCAATTTGGATAACTTGTTGTGCTTCAAACTTAACTTTGTACTTATATCTGCTTTAATATGGGAGGAGGGGGGAGGACTACTAGGGGTTGTGATAATTGATCTGATAAAACTGTTGTAATTGTGAAAAGGAAGCTGGAGGGGGTGGCAATAATGCAGACTGGACAAATCTGTATGATCTGGAAGAGCCTCAGTCTGAAGAAGTTTCACCTCCGAACGTCTCTGCAAACTTCCAATCAATGGATGAGAACAAGTCTGATGGGAAGCAGCTAACGGGTGAGAATCGAGATGGGCCGAAGCTTCTCCCTTTTGAGTTTGTTGCTTTGGAGGCATGTCTGGAGGCTGCTTGCAGTTGCTTGGATAATGAGGTGGAGCATAATTCTATTGCTTTAATCAAATGTGCCAAACACTGTTACAGGGCTTAATTGGGCTGTTTGAGTTGGTTAATTATCACTGTATTGTTGCTCATTTTTGCCGTCTTTCTGGTCTTTGTTTTTGTGGTTCTTTCTCAAGCAGGCAAGGACACTGGAGCAAGAAGCTCATCCTGCTTTAGATAAGCTGACTTCAAAGATTAGTACTCTCAACTTGGAACGTGTTCGTCAAATCAAAAGTCGCTTGGTTGCTATTAC</genome_strand>
        <mrna_strand>CTATTAAATTATGAGGGGCGTTACTCCGCCGCAGAAGTTTTCCGTTCCGTCGCCGGACGATGACGCCGATATAATCCGACCCAACACCGTCATCCCCGGCGGCGTAACCGTGGGCGCTGCTATGCGAAAGAAGGCCACCGGGGTACGTTCATGGCTTCTGTTGGATTCAACTGGACAGACCCAAGTTGTGGAAGCCGGGAAACATGCAATTATGCGGCGGACTGGACTTCCGGCTCGTGATCTTCGCATATTGGACCCACTTCTCTCGTATCCATCTACTGTGTTGGGTCGTGAACGGGCTATCGTCATCAATTTGGAGCATATCAAGGCTATTATTACCGCCCAGGAAGTCCTCTTGCTCAACGCTAGGGATCCCTCTGTTGCTCCTTTTGTTGAAGAGGTTCAACGGAGAATTTTGCGTCATCACCAAGCTACCAAGTCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGGAGGGGGTGGCAATAATGCAGACTGGACAAATCTGTATGATCTGGAAGAGCCTCAGTCTGAAGAAGTTTCACCTCCGAACGTCTCTGCAAACTTCCAATCAATGGATGAGAACAAGGCTGATGGGAAGCAGCTAACGGGTGAGAATCGAGATGGGCCGAAGCTTCTCCCTTTTGAGTTTGTTGCTTTGGAGGCATGTCTGGAGGCTGCTTGCAGTTGCTTGGATAATGAG....................................................................................................................................................GCAAGGACACTGGAGCAAGAAGCTCATCCTGCTTTAGATAAGCTGACTTCAAAGATTAGTACTCTCAACTTGGAACGTGTTCGTCAAATCAAAAGTCGCTTGGTTGCTATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245443" ref_strand="+" ref_description="SGN-E245443 [cLEF-43-C1]">
      <seq>aggaattcggcacgaggagaattttgcgtcatcaccaagctaccaagtcccaggaagctggagggggtggcaataatgcagactggacaaatctgtatgatctggaagagcctcagtctgaagaagtttcacctccgaacgtctctgcaaacttccaatcaatggatgagaacaagtctgatgggaagcagctaacgggtgagaatcgagatgggccgaagcttctcccttttgagtttgttgctttggaggcatgtctggaggctgcttgcagttgcttggataatgaggcaaggacactggagcaagaagctcatcctgctttagataagctgacttcaaagattagtactctcaacttggaacgtgttcgtcaaatcaaaagtcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="98044" stop="95880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97736" g_stop="97699" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="53" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97698" i_stop="96664" i_length="1035">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96663" g_stop="96427" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="290" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96426" i_stop="96279" i_length="148">
            <donor d_prob="0.225" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96278" g_stop="96180" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="389" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E245443" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97736" e_stop="97699"/>
          <exon e_start="96663" e_stop="96427"/>
          <exon e_start="96278" e_stop="96180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAATTTTGCGTCATCACCAAGCTACCAAGTCCCAGGTTATTTTCTTAATTTTATATGCTGATGAATGATCAATTTCTGATGCTTTAGTAGGTATAGATCATGTAAACAACCCCAATAAAATGTATGGATAATAGTTATCTGAATTTTATCCAAATGATTTCGTACCCAACAGAGGGAGTGGATATAGAAGATTCATATAACCAATCCAACTCAAAATGACTTCTTTTCACATTTTGATGCTTTGGGGGTATTTAATCGATTATGTGTGTTTCTCTTCTTAGTATTTAGTTGATGAAATTGTAAAATGTCGAATCTTAACTTTTATACTTGTAGTTTGTACATTGCTAGTTTAACCTTCTGTAGGCTCTTGGATATTGTCATGTTTGAAATTCTCTGTTCAAAATTACTGGTTTTCTATTTTCATGATTATGCTACTGCTGTTAAAAGTTGCATTATACTCCACTCCATATGTATACCTTTTTCTTAATGATGGTGGTGTTTCGGCCCACTTAAACACACTTTATCTAATCAACCGGAGTCTGCTACTGCTTACAAAGGTTAGACCTGAGTTGGATTCTTTGGATCTAGGTTGTTACACGTGTGCCTCAACTGCTCTATCATTTCGGGGGATCCATGTTGAAAGCCATAGTGTTGATACCTAATGCCGCAAACCAGTTACCCACTACAGGCCAAGAGTCAAAGTCCCTTTTTTGTTTTATTTTAGATTTAGAAAAAAAAAATAAGAAATTTGTATTTATACCATCTAGCAGAAGCTTCAAGTTTAACGATTTTTGCCTTCTCATTTTGGTTTAAAATAGACTTCTTTTTTGCATCTTCAGTTTAATGCCTAAAATTTTAGATTTTATGACGACCTATGTCAATGTATAGTCACTTGTGGCCTGTGGGACTATACTGGGTATGTTATTGTTGTATGACCTATCTCAATTTGGATAACTTGTTGTGCTTCAAACTTAACTTTGTACTTATATCTGCTTTAATATGGGAGGAGGGGGGAGGACTACTAGGGGTTGTGATAATTGATCTGATAAAACTGTTGTAATTGTGAAAAGGAAGCTGGAGGGGGTGGCAATAATGCAGACTGGACAAATCTGTATGATCTGGAAGAGCCTCAGTCTGAAGAAGTTTCACCTCCGAACGTCTCTGCAAACTTCCAATCAATGGATGAGAACAAGTCTGATGGGAAGCAGCTAACGGGTGAGAATCGAGATGGGCCGAAGCTTCTCCCTTTTGAGTTTGTTGCTTTGGAGGCATGTCTGGAGGCTGCTTGCAGTTGCTTGGATAATGAGGTGGAGCATAATTCTATTGCTTTAATCAAATGTGCCAAACACTGTTACAGGGCTTAATTGGGCTGTTTGAGTTGGTTAATTATCACTGTATTGTTGCTCATTTTTGCCGTCTTTCTGGTCTTTGTTTTTGTGGTTCTTTCTCAAGCAGGCAAGGACACTGGAGCAAGAAGCTCATCCTGCTTTAGATAAGCTGACTTCAAAGATTAGTACTCTCAACTTGGAACGTGTTCGTCAAATCAAAAGTCGC</genome_strand>
        <mrna_strand>GGAGAATTTTGCGTCATCACCAAGCTACCAAGTCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGGAGGGGGTGGCAATAATGCAGACTGGACAAATCTGTATGATCTGGAAGAGCCTCAGTCTGAAGAAGTTTCACCTCCGAACGTCTCTGCAAACTTCCAATCAATGGATGAGAACAAGTCTGATGGGAAGCAGCTAACGGGTGAGAATCGAGATGGGCCGAAGCTTCTCCCTTTTGAGTTTGTTGCTTTGGAGGCATGTCTGGAGGCTGCTTGCAGTTGCTTGGATAATGAG....................................................................................................................................................GCAAGGACACTGGAGCAAGAAGCTCATCCTGCTTTAGATAAGCTGACTTCAAAGATTAGTACTCTCAACTTGGAACGTGTTCGTCAAATCAAAAGTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348983" ref_strand="+" ref_description="SGN-E348983 [cTOF-29-F7]">
      <seq>ttaaattatgaggggcgttactccgccgcagaagttttccgttccgtcgccggacgatgacgccgatataatccgacccaacaccgtcatccccggcggcgtaaccgtgggcgctgctatgcgaaagaaggccaccggggtacgttcatggcttctgttggattcaactggacagacccaagttgtggaagccgggaaacatgcaattatgcggcggactggacttccggctcgtgatcttcgcatattggacccacttctctcgtatccatctactgtgttgggtcgtgaacgggctatcgtcatcaatttggagcatatcaaggctattattaccgcccaggaagtcctcttgctcaacgctagggatccctctgttgctccttttgttgaagaggttcaacggagaattttgcgtcatcaccaagctaccaagtcccaggaagctggagggggtggcaataatgcagactggacaaatctgtatgatctggaagagcctcagtctgaagaagtttcacctccgaacgtctctgcaaacttccaatcaatggatgagaacaagtctgatgggaagcagctaacgggtgagaatcgagatgggccgaagcttctcccttttgagtttgttgctttggaggcatgtctggaggctgcttgcagntgcttggataatgaggcaaggacactggagcaagaagctcatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="98440" stop="95949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98140" g_stop="97699" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97698" i_stop="96664" i_length="1035">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96663" g_stop="96427" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="679" r_length="237" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96426" i_stop="96279" i_length="148">
            <donor d_prob="0.225" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96278" g_stop="96249" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="709" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E348983" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98140" e_stop="97699"/>
          <exon e_start="96663" e_stop="96427"/>
          <exon e_start="96278" e_stop="96249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATTATGAGGGGCGTTACTCCGCCGCAGAAGTTTTCCGTTCCGTCGCCGGACGATGACGCCGATATAATCCGACCCAACACCGTCATCCCCGGCGGCGTAACCGTGGGCGCTGCTATGCGAAAGAAGGCCACCGGGGTACGTTCATGGCTTCTGTTGGATTCAACTGGACAGACCCAAGTTGTGGAAGCCGGGAAACATGCAATTATGCGGCGGACTGGACTTCCGGCTCGTGATCTTCGCATATTGGACCCACTTCTCTCGTATCCATCTACTGTGTTGGGTCGTGAACGGGCTATCGTCATCAATTTGGAGCATATCAAGGCTATTATTACCGCCCAGGAAGTCCTCTTGCTCAACGCTAGGGATCCCTCTGTTGCTCCTTTTGTTGAAGAGGTTCAACGGAGAATTTTGCGTCATCACCAAGCTACCAAGTCCCAGGTTATTTTCTTAATTTTATATGCTGATGAATGATCAATTTCTGATGCTTTAGTAGGTATAGATCATGTAAACAACCCCAATAAAATGTATGGATAATAGTTATCTGAATTTTATCCAAATGATTTCGTACCCAACAGAGGGAGTGGATATAGAAGATTCATATAACCAATCCAACTCAAAATGACTTCTTTTCACATTTTGATGCTTTGGGGGTATTTAATCGATTATGTGTGTTTCTCTTCTTAGTATTTAGTTGATGAAATTGTAAAATGTCGAATCTTAACTTTTATACTTGTAGTTTGTACATTGCTAGTTTAACCTTCTGTAGGCTCTTGGATATTGTCATGTTTGAAATTCTCTGTTCAAAATTACTGGTTTTCTATTTTCATGATTATGCTACTGCTGTTAAAAGTTGCATTATACTCCACTCCATATGTATACCTTTTTCTTAATGATGGTGGTGTTTCGGCCCACTTAAACACACTTTATCTAATCAACCGGAGTCTGCTACTGCTTACAAAGGTTAGACCTGAGTTGGATTCTTTGGATCTAGGTTGTTACACGTGTGCCTCAACTGCTCTATCATTTCGGGGGATCCATGTTGAAAGCCATAGTGTTGATACCTAATGCCGCAAACCAGTTACCCACTACAGGCCAAGAGTCAAAGTCCCTTTTTTGTTTTATTTTAGATTTAGAAAAAAAAAATAAGAAATTTGTATTTATACCATCTAGCAGAAGCTTCAAGTTTAACGATTTTTGCCTTCTCATTTTGGTTTAAAATAGACTTCTTTTTTGCATCTTCAGTTTAATGCCTAAAATTTTAGATTTTATGACGACCTATGTCAATGTATAGTCACTTGTGGCCTGTGGGACTATACTGGGTATGTTATTGTTGTATGACCTATCTCAATTTGGATAACTTGTTGTGCTTCAAACTTAACTTTGTACTTATATCTGCTTTAATATGGGAGGAGGGGGGAGGACTACTAGGGGTTGTGATAATTGATCTGATAAAACTGTTGTAATTGTGAAAAGGAAGCTGGAGGGGGTGGCAATAATGCAGACTGGACAAATCTGTATGATCTGGAAGAGCCTCAGTCTGAAGAAGTTTCACCTCCGAACGTCTCTGCAAACTTCCAATCAATGGATGAGAACAAGTCTGATGGGAAGCAGCTAACGGGTGAGAATCGAGATGGGCCGAAGCTTCTCCCTTTTGAGTTTGTTGCTTTGGAGGCATGTCTGGAGGCTGCTTGCAGTTGCTTGGATAATGAGGTGGAGCATAATTCTATTGCTTTAATCAAATGTGCCAAACACTGTTACAGGGCTTAATTGGGCTGTTTGAGTTGGTTAATTATCACTGTATTGTTGCTCATTTTTGCCGTCTTTCTGGTCTTTGTTTTTGTGGTTCTTTCTCAAGCAGGCAAGGACACTGGAGCAAGAAGCTCATCCT</genome_strand>
        <mrna_strand>TTAAATTATGAGGGGCGTTACTCCGCCGCAGAAGTTTTCCGTTCCGTCGCCGGACGATGACGCCGATATAATCCGACCCAACACCGTCATCCCCGGCGGCGTAACCGTGGGCGCTGCTATGCGAAAGAAGGCCACCGGGGTACGTTCATGGCTTCTGTTGGATTCAACTGGACAGACCCAAGTTGTGGAAGCCGGGAAACATGCAATTATGCGGCGGACTGGACTTCCGGCTCGTGATCTTCGCATATTGGACCCACTTCTCTCGTATCCATCTACTGTGTTGGGTCGTGAACGGGCTATCGTCATCAATTTGGAGCATATCAAGGCTATTATTACCGCCCAGGAAGTCCTCTTGCTCAACGCTAGGGATCCCTCTGTTGCTCCTTTTGTTGAAGAGGTTCAACGGAGAATTTTGCGTCATCACCAAGCTACCAAGTCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGGAGGGGGTGGCAATAATGCAGACTGGACAAATCTGTATGATCTGGAAGAGCCTCAGTCTGAAGAAGTTTCACCTCCGAACGTCTCTGCAAACTTCCAATCAATGGATGAGAACAAGTCTGATGGGAAGCAGCTAACGGGTGAGAATCGAGATGGGCCGAAGCTTCTCCCTTTTGAGTTTGTTGCTTTGGAGGCATGTCTGGAGGCTGCTTGCAGNTGCTTGGATAATGAG....................................................................................................................................................GCAAGGACACTGGAGCAAGAAGCTCATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364941" ref_strand="+" ref_description="SGN-E364941 [cLPP-17-M9]">
      <seq>tattaaattatgaggggcgttactccgccgcagaagttttccgttccgtcgccggacgatgacgccgatataatccgacccaacaccgtcatccccggcggcgtaaccgtgggcgctgctatgcgaaagaaggccaccggggtacgttcatggcttctgttggattcaactggacagacccaagttgtggaagccgggaaacatgcaattatgcggcggactggacttccggctcgtgatcttcgcatattggacccacttctctcgtatccatctactgtgttgggtcgtgaacgggctatcgtcatcaatttggagcatatcaaggctattattaccgcccaggaagtcctcttgctcaacgctagggatccctctgttgctccttttgttgaagaggttcaacggagaattttgcgtcatcaccaagctaccaagtcccaggaagctggagggggtggcaataatgcagactggacaaatctgtatgatctggaagagcctcagtctgaagaagtttcacctccgaacgtctctgcaaacttccaatcaatggatgagaacaaggctgatgggaagcagctaacgggtgagaatcgagatgggccgaagcttctccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="98442" stop="96187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98142" g_stop="97699" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97698" i_stop="96664" i_length="1035">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96663" g_stop="96487" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="621" r_length="177" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E364941" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98142" e_stop="97699"/>
          <exon e_start="96663" e_stop="96487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAAATTATGAGGGGCGTTACTCCGCCGCAGAAGTTTTCCGTTCCGTCGCCGGACGATGACGCCGATATAATCCGACCCAACACCGTCATCCCCGGCGGCGTAACCGTGGGCGCTGCTATGCGAAAGAAGGCCACCGGGGTACGTTCATGGCTTCTGTTGGATTCAACTGGACAGACCCAAGTTGTGGAAGCCGGGAAACATGCAATTATGCGGCGGACTGGACTTCCGGCTCGTGATCTTCGCATATTGGACCCACTTCTCTCGTATCCATCTACTGTGTTGGGTCGTGAACGGGCTATCGTCATCAATTTGGAGCATATCAAGGCTATTATTACCGCCCAGGAAGTCCTCTTGCTCAACGCTAGGGATCCCTCTGTTGCTCCTTTTGTTGAAGAGGTTCAACGGAGAATTTTGCGTCATCACCAAGCTACCAAGTCCCAGGTTATTTTCTTAATTTTATATGCTGATGAATGATCAATTTCTGATGCTTTAGTAGGTATAGATCATGTAAACAACCCCAATAAAATGTATGGATAATAGTTATCTGAATTTTATCCAAATGATTTCGTACCCAACAGAGGGAGTGGATATAGAAGATTCATATAACCAATCCAACTCAAAATGACTTCTTTTCACATTTTGATGCTTTGGGGGTATTTAATCGATTATGTGTGTTTCTCTTCTTAGTATTTAGTTGATGAAATTGTAAAATGTCGAATCTTAACTTTTATACTTGTAGTTTGTACATTGCTAGTTTAACCTTCTGTAGGCTCTTGGATATTGTCATGTTTGAAATTCTCTGTTCAAAATTACTGGTTTTCTATTTTCATGATTATGCTACTGCTGTTAAAAGTTGCATTATACTCCACTCCATATGTATACCTTTTTCTTAATGATGGTGGTGTTTCGGCCCACTTAAACACACTTTATCTAATCAACCGGAGTCTGCTACTGCTTACAAAGGTTAGACCTGAGTTGGATTCTTTGGATCTAGGTTGTTACACGTGTGCCTCAACTGCTCTATCATTTCGGGGGATCCATGTTGAAAGCCATAGTGTTGATACCTAATGCCGCAAACCAGTTACCCACTACAGGCCAAGAGTCAAAGTCCCTTTTTTGTTTTATTTTAGATTTAGAAAAAAAAAATAAGAAATTTGTATTTATACCATCTAGCAGAAGCTTCAAGTTTAACGATTTTTGCCTTCTCATTTTGGTTTAAAATAGACTTCTTTTTTGCATCTTCAGTTTAATGCCTAAAATTTTAGATTTTATGACGACCTATGTCAATGTATAGTCACTTGTGGCCTGTGGGACTATACTGGGTATGTTATTGTTGTATGACCTATCTCAATTTGGATAACTTGTTGTGCTTCAAACTTAACTTTGTACTTATATCTGCTTTAATATGGGAGGAGGGGGGAGGACTACTAGGGGTTGTGATAATTGATCTGATAAAACTGTTGTAATTGTGAAAAGGAAGCTGGAGGGGGTGGCAATAATGCAGACTGGACAAATCTGTATGATCTGGAAGAGCCTCAGTCTGAAGAAGTTTCACCTCCGAACGTCTCTGCAAACTTCCAATCAATGGATGAGAACAAGTCTGATGGGAAGCAGCTAACGGGTGAGAATCGAGATGGGCCGAAGCTTCTCCCT</genome_strand>
        <mrna_strand>TATTAAATTATGAGGGGCGTTACTCCGCCGCAGAAGTTTTCCGTTCCGTCGCCGGACGATGACGCCGATATAATCCGACCCAACACCGTCATCCCCGGCGGCGTAACCGTGGGCGCTGCTATGCGAAAGAAGGCCACCGGGGTACGTTCATGGCTTCTGTTGGATTCAACTGGACAGACCCAAGTTGTGGAAGCCGGGAAACATGCAATTATGCGGCGGACTGGACTTCCGGCTCGTGATCTTCGCATATTGGACCCACTTCTCTCGTATCCATCTACTGTGTTGGGTCGTGAACGGGCTATCGTCATCAATTTGGAGCATATCAAGGCTATTATTACCGCCCAGGAAGTCCTCTTGCTCAACGCTAGGGATCCCTCTGTTGCTCCTTTTGTTGAAGAGGTTCAACGGAGAATTTTGCGTCATCACCAAGCTACCAAGTCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGGAGGGGGTGGCAATAATGCAGACTGGACAAATCTGTATGATCTGGAAGAGCCTCAGTCTGAAGAAGTTTCACCTCCGAACGTCTCTGCAAACTTCCAATCAATGGATGAGAACAAGGCTGATGGGAAGCAGCTAACGGGTGAGAATCGAGATGGGCCGAAGCTTCTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365073" ref_strand="+" ref_description="SGN-E365073 [cLPP-17-C19]">
      <seq>tattaaattatgaggggcgttactccgccgcagaagttttccgttccgtcgccggacgatgacgccgatataatccgacccaacaccgtcatccccggcggcgtaaccgtgggcgctgctatgcgaaagaaggccaccggggtacgttcatggcttctgttggattcaactggacagacccaagttgtggaagccgggaaacatgcaattatgcggcggactggacttccggctcgtgatcttcgcatattggacccacttctctcgtatccatctactgtgttgggtcgtgaacgggctatcgtcatcaatttggagcatatcaaggctattattaccgcccaggaagtcctcttgctcaacgctagggatccctctgttgctccttttgttgaagaggttcaacggagaattttgcgtcatcaccaagctaccaagtcccaggaagctggagggggtggcaataatgcagactggacaaatctgtatgatctggaagagcctcagtctgaagaagtttcacctccgaacgtctctgcaaacttccaatcaatggatgagaacaaggctgatgggaagcagctaacgggtgagaatcgagatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="98442" stop="96201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98142" g_stop="97699" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97698" i_stop="96664" i_length="1035">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96663" g_stop="96501" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="607" r_length="163" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E365073" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98142" e_stop="97699"/>
          <exon e_start="96663" e_stop="96501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAAATTATGAGGGGCGTTACTCCGCCGCAGAAGTTTTCCGTTCCGTCGCCGGACGATGACGCCGATATAATCCGACCCAACACCGTCATCCCCGGCGGCGTAACCGTGGGCGCTGCTATGCGAAAGAAGGCCACCGGGGTACGTTCATGGCTTCTGTTGGATTCAACTGGACAGACCCAAGTTGTGGAAGCCGGGAAACATGCAATTATGCGGCGGACTGGACTTCCGGCTCGTGATCTTCGCATATTGGACCCACTTCTCTCGTATCCATCTACTGTGTTGGGTCGTGAACGGGCTATCGTCATCAATTTGGAGCATATCAAGGCTATTATTACCGCCCAGGAAGTCCTCTTGCTCAACGCTAGGGATCCCTCTGTTGCTCCTTTTGTTGAAGAGGTTCAACGGAGAATTTTGCGTCATCACCAAGCTACCAAGTCCCAGGTTATTTTCTTAATTTTATATGCTGATGAATGATCAATTTCTGATGCTTTAGTAGGTATAGATCATGTAAACAACCCCAATAAAATGTATGGATAATAGTTATCTGAATTTTATCCAAATGATTTCGTACCCAACAGAGGGAGTGGATATAGAAGATTCATATAACCAATCCAACTCAAAATGACTTCTTTTCACATTTTGATGCTTTGGGGGTATTTAATCGATTATGTGTGTTTCTCTTCTTAGTATTTAGTTGATGAAATTGTAAAATGTCGAATCTTAACTTTTATACTTGTAGTTTGTACATTGCTAGTTTAACCTTCTGTAGGCTCTTGGATATTGTCATGTTTGAAATTCTCTGTTCAAAATTACTGGTTTTCTATTTTCATGATTATGCTACTGCTGTTAAAAGTTGCATTATACTCCACTCCATATGTATACCTTTTTCTTAATGATGGTGGTGTTTCGGCCCACTTAAACACACTTTATCTAATCAACCGGAGTCTGCTACTGCTTACAAAGGTTAGACCTGAGTTGGATTCTTTGGATCTAGGTTGTTACACGTGTGCCTCAACTGCTCTATCATTTCGGGGGATCCATGTTGAAAGCCATAGTGTTGATACCTAATGCCGCAAACCAGTTACCCACTACAGGCCAAGAGTCAAAGTCCCTTTTTTGTTTTATTTTAGATTTAGAAAAAAAAAATAAGAAATTTGTATTTATACCATCTAGCAGAAGCTTCAAGTTTAACGATTTTTGCCTTCTCATTTTGGTTTAAAATAGACTTCTTTTTTGCATCTTCAGTTTAATGCCTAAAATTTTAGATTTTATGACGACCTATGTCAATGTATAGTCACTTGTGGCCTGTGGGACTATACTGGGTATGTTATTGTTGTATGACCTATCTCAATTTGGATAACTTGTTGTGCTTCAAACTTAACTTTGTACTTATATCTGCTTTAATATGGGAGGAGGGGGGAGGACTACTAGGGGTTGTGATAATTGATCTGATAAAACTGTTGTAATTGTGAAAAGGAAGCTGGAGGGGGTGGCAATAATGCAGACTGGACAAATCTGTATGATCTGGAAGAGCCTCAGTCTGAAGAAGTTTCACCTCCGAACGTCTCTGCAAACTTCCAATCAATGGATGAGAACAAGTCTGATGGGAAGCAGCTAACGGGTGAGAATCGAGATGGGC</genome_strand>
        <mrna_strand>TATTAAATTATGAGGGGCGTTACTCCGCCGCAGAAGTTTTCCGTTCCGTCGCCGGACGATGACGCCGATATAATCCGACCCAACACCGTCATCCCCGGCGGCGTAACCGTGGGCGCTGCTATGCGAAAGAAGGCCACCGGGGTACGTTCATGGCTTCTGTTGGATTCAACTGGACAGACCCAAGTTGTGGAAGCCGGGAAACATGCAATTATGCGGCGGACTGGACTTCCGGCTCGTGATCTTCGCATATTGGACCCACTTCTCTCGTATCCATCTACTGTGTTGGGTCGTGAACGGGCTATCGTCATCAATTTGGAGCATATCAAGGCTATTATTACCGCCCAGGAAGTCCTCTTGCTCAACGCTAGGGATCCCTCTGTTGCTCCTTTTGTTGAAGAGGTTCAACGGAGAATTTTGCGTCATCACCAAGCTACCAAGTCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGGAGGGGGTGGCAATAATGCAGACTGGACAAATCTGTATGATCTGGAAGAGCCTCAGTCTGAAGAAGTTTCACCTCCGAACGTCTCTGCAAACTTCCAATCAATGGATGAGAACAAGGCTGATGGGAAGCAGCTAACGGGTGAGAATCGAGATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E362356" ref_strand="+" ref_description="SGN-E362356 [cLPP-10-O14]">
      <seq>tattaaattatgaggggcgttactccgccgcagaagttttccgttccgtcgccggacgatgacgccgatataatccgacccaacaccgtcatccccggcggcgtaaccgtgggcgctgctatgcgaaagaaggccaccggggtacgttcatggcttctgttggattcaactggacagacccaagttgtggaagccgggaaacatgcaattatgcggcggactggacttccggctcgtgatcttcgcatattggacccacttctctcgtatccatctactgtgttgggtcgtgaacgggctatcgtcatcaatttggagcatatcaaggctattattaccgcccaggaagtcctcttgctcaacgctagggatccctctgttgctccttttgttgaagaggttcaacggagaattttgcgtcatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="98442" stop="97417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98142" g_stop="97717" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E362356" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98142" e_stop="97717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAAATTATGAGGGGCGTTACTCCGCCGCAGAAGTTTTCCGTTCCGTCGCCGGACGATGACGCCGATATAATCCGACCCAACACCGTCATCCCCGGCGGCGTAACCGTGGGCGCTGCTATGCGAAAGAAGGCCACCGGGGTACGTTCATGGCTTCTGTTGGATTCAACTGGACAGACCCAAGTTGTGGAAGCCGGGAAACATGCAATTATGCGGCGGACTGGACTTCCGGCTCGTGATCTTCGCATATTGGACCCACTTCTCTCGTATCCATCTACTGTGTTGGGTCGTGAACGGGCTATCGTCATCAATTTGGAGCATATCAAGGCTATTATTACCGCCCAGGAAGTCCTCTTGCTCAACGCTAGGGATCCCTCTGTTGCTCCTTTTGTTGAAGAGGTTCAACGGAGAATTTTGCGTCATCAC</genome_strand>
        <mrna_strand>TATTAAATTATGAGGGGCGTTACTCCGCCGCAGAAGTTTTCCGTTCCGTCGCCGGACGATGACGCCGATATAATCCGACCCAACACCGTCATCCCCGGCGGCGTAACCGTGGGCGCTGCTATGCGAAAGAAGGCCACCGGGGTACGTTCATGGCTTCTGTTGGATTCAACTGGACAGACCCAAGTTGTGGAAGCCGGGAAACATGCAATTATGCGGCGGACTGGACTTCCGGCTCGTGATCTTCGCATATTGGACCCACTTCTCTCGTATCCATCTACTGTGTTGGGTCGTGAACGGGCTATCGTCATCAATTTGGAGCATATCAAGGCTATTATTACCGCCCAGGAAGTCCTCTTGCTCAACGCTAGGGATCCCTCTGTTGCTCCTTTTGTTGAAGAGGTTCAACGGAGAATTTTGCGTCATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310340" ref_strand="+" ref_description="SGN-E310340 [cTOA-1-O5]">
      <seq>taatccgacccaacaccgtcatccccggcggcgtaaccgtgggcgctgctatgcgaaagaaggccaccggggtacgttcatggcttttgttggattcaactggacagacccaagttgtggaagccgtgaaacatgcaattatgcggcggactggacttccggctcgtgatcttcgcatattggacccacttctttcgtatccatctactgtgttgggtcatgaacaggctatctttatcaatttggagcatattaaggctattattaccgcccaggaagttctcttgctcaacgcttgggatccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="98372" stop="97467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98072" g_stop="97767" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E310340" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98072" e_stop="97767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCGACCCAACACCGTCATCCCCGGCGGCGTAACCGTGGGCGCTGCTATGCGAAAGAAGGCCACCGGGGTACGTTCATGGCTTCTGTTGGATTCAACTGGACAGACCCAAGTTGTGGAAGCCGGGAAACATGCAATTATGCGGCGGACTGGACTTCCGGCTCGTGATCTTCGCATATTGGACCCACTTCTCTCGTATCCATCTACTGTGTTGGGTCGTGAACGGGCTATCGTCATCAATTTGGAGCATATCAAGGCTATTATTACCGCCCAGGAAGTCCTCTTGCTCAACGCTAGGGATCCCT</genome_strand>
        <mrna_strand>TAATCCGACCCAACACCGTCATCCCCGGCGGCGTAACCGTGGGCGCTGCTATGCGAAAGAAGGCCACCGGGGTACGTTCATGGCTTTTGTTGGATTCAACTGGACAGACCCAAGTTGTGGAAGCCGTGAAACATGCAATTATGCGGCGGACTGGACTTCCGGCTCGTGATCTTCGCATATTGGACCCACTTCTTTCGTATCCATCTACTGTGTTGGGTCATGAACAGGCTATCTTTATCAATTTGGAGCATATTAAGGCTATTATTACCGCCCAGGAAGTTCTCTTGCTCAACGCTTGGGATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723442" ref_strand="-" ref_description="SGN-E723442 [FC20CA03]">
      <seq>ttttttttttttttttttttttttttttttttttttttttctcattaaaataaagtaagaaattgaagaccgaaacggttgccatcggaaaatggatatcatcgccgtcgaggaacacagaaacggccatttttaaaaacctaatttatatatatatatatatatacacacaacttgaaacaaagagaaaaattcatttctttttcaaatctcaactgtggagaagaactaagtaagactagtcttgccgggtttatcagcagcttgaagagttttgtcgatgagcttacgagcctttttgctacggatctccactctgacgctggagcttttgtccattttgacgtagggtttcttcgatttcttcaacttcctcaccttcgattttatcgattgaaccaaactgtccaattgaatcgccatcgccattgttggagaagaaaaaggggagatagaaaaatttaattcggccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="+" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="85970" stop="106578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102478" g_stop="102511" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.765"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102512" i_stop="105844" i_length="3333">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105845" g_stop="106271" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="461" r_length="427" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="+" ref_id="SGN-E723442" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723442" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="102478" e_stop="102511"/>
          <exon e_start="105845" e_stop="106271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTTATTTTTATTTATTCATTTTATTATTTGTGTGTTTTCTAAAAAATTACTATTAACACAAAATGCTTTGTATACTAAGACGATAACTTAATAATGTACTAAACTGAGTTAAGAGATGCTGTAAAAAGAGCCTCAGTTTTCCTTCTCTAACCATTTGAAGTACTCCCTTCGTCCACTTTTAATTAACTAATATATTAAGATATATTATTTTATTATATTTATATGTAAAAGAAAGATATAATTTATAATACTTTTTATATGTTTTTGAATATTTAAATTTTTATTTTAAAATATTAAATTAATATAATTTAATTTAACTTTATAAATTAATTAAATTGTTTTTAAAATGACGCAACATAACAATTAAAAATGAAAGGAAGTAATTCACAACACATGTTGTAATTCACAGCGAAAACCAAAAGTTTGGAAAGCGCCGTCTTCAAAAGTCGTAACTTTTCACTTTCATAGAAAATTTGCACAAATAAATTAATGTTTTCATAAATTCAATTGTGAAATTTTGTCAAACTAAATTACTTAAATAAATTGTATAACAATTAAAAATGAAAGGAAGTAATTCACAGCACATGTTGTAATTCACAACAAAATCAAAAGTTTGGAAAGCGCCGTTTTCAAAAGTCGTAACTTTTCACTTTCGTAGAGAATTTGCACAAATAAATTAATGTTTTCATAAAATCAATTGTGAAATTTTGTCAACTAAATTACTTAAATAAATTGTTTAAGAGAAGTGCTAAATGACCAGAAAAAGGTGGTTAAAATTTGATCAGAATAATGAAAAAGATTATTATAGCTTTTCCATTAAAAAAAAATAATTTTTTGATATTTTCAAAATAATATGAGCATTTATTATTTTAATAAGATGAATTTTCTGGATCCATGCCTTATCCTTCTTCAATTCTTTTTTTTTGGGTCATTTCACTTCTCCTTTCTCGAACGAAATAATAAAAGTATTTATTTTATGTATCTATTAAAACTTCATCAATGTAAAAAAAAATTAAAAGCACAAAGAAAATCATAGTTCCCTAAAAAAAATTCATAATTTATTTGCTTTTTAATGTCAAATTATGTATGTATATATAATTAATACATTAATTATTTTTTTGTAATATGACTCAGTTTCAAATACAGTCTCTATATTTCAAATTTAAACATTTAGACTTTATGTACTATAATAAATATACACTTACACCTCCAACTAAGTTTATCTATAACTAATTATATTAAATTATAATTATTGAATAATAAACTAAAAATATAAAAAAAAATTCTTGTGACTCTATTCTTACAAAATTAATTAGGGTCGATACTTATAAGTATAAATTTTTTATGATTTTTGTAATGTATTAATGTTTATCATATATAAAGTGTTTTGAGGTTTGCCTGATTTTATTGAAATATTTTCAAATTATACTTACAAAATTATTTAAATATGTATTTTAAATTTATTTGAACACAACTTCATAAACTTATTTAGTTATAACTCATATTAATAATAATAAATAAGTAATAGTTCACATATTATCAAGTCAACATAACATAAGGGTGCAAAACTATCACATATTCAATATGATTGTTGTTAAATAGGATCGACAGATGAAATATATGATTTTTGTAATATTGTGATATTTGCCATCTCTGAAGTGTTTCGAGTTTTGATTGTCGTTATTAATATAGTTTTATGTTACATGTTAAAATATTCAAATAAATAGCCTAAATTTATTTAAACATAGTAGTTTATAAAATTATATATTTAGACGTCATATTAATAACAAATATAAATAATGATCTATAAATTATCAAATTGACGTAATATAGAATGGATACAAGACTATAATTAAAATTAACACGTTACTCTTTGGGATTCTCAACAACATGCAATATTAGTAAAATAAATGTGGATTCTGAAATTTACAATTGAATGGTAATGATTAATATGATTCTTCACTTATTAATTAACTGTCTATACATCGTGTGCGTATTTCTTTTAAAAAATAATAATATAATTTGGGACTTAGATATTTTAAATAACTATTAATAATAATGCAATTTTCGTAGTGATGTCTTGAATTAAGAAAGTTATTTTTTATTATATAATTGTCTTAATATCAAGGTTGACTGCTCTCTTTTTAATATAATACTAACATTGATATATATAAAATAATCAAATAAGACACAGAATATTTTTTACATTTCATTACTATACCACATTGTTTGTTTATCTTTATAATAATAATATTGTGCAGATTATGTTGAATTATTATTAGGAGAAAAAAAGATTTGATATACTCCTTAATCCATGGCATGTAGCTTGGTTATGCAATGACAGACTATCACTTGCTGAAATAATACAAAATTTGATTAATTAAATTTACGTTAAATAATTAAAGACTATCTCTTAATTCCTTTTTAGGTGAAAAAACAACACTATTATTAGTCACGCAAGAGTGAATAATGAATTCCGTACGAAATTCTCTATAAACGTTTTCCGAATGATGTATGTCACGTATAGCTACTTAAATAGGCTTTAAGTATTTATACTTATATCACATTCTCAAATTACTCATTAATAACTAACATTATAATTAAATATTTAAAAGTATTTAATATTTTTTTCTATACAGAGGGTATAATCAAAACTTATTGAATTTTTGCAAATCCGTACCTAACATATTGGATTGGGATTATGAGTCCGTTTGAATAAGTAGATGATAAATTATAAGGGTTGAAATTAATCATAAGTTACAAATAAACAATTATTTAGTTGTGTTTGAATAGAAGTATTAAAACTATACTAATTAATTTATTTGATAGAAAAATAGTGATTAATAAGTTGTTCTTTTTATTTAAATGATTAAATTTTCCTTACTTTCAAAATGTAATGGTTTAAAAATAAGAAGAAAAGGAAAAACAACAAGATAAAGTCAAGAGTAAGTTAGGTGTTTTGGAATTTAAAAAATTAATAAGAAAATGTCAAATAAAAAAAAAGTAATACTAAATATAAGCTGAAAAAACTCATAAAAAAAGGATTGAGATTTTAATTCATGAACACTTAGGCATTTATTACATGAAATAGATAAATTAAAATTTGTTTATAAAACTAGTTCTTTTAAGACAATTCAAATGATGTGATTCCAATTATTCGTCGCACTCAATATATTAATTTACACGAGTTGATTAATATAAATCGCACTAGCAAAATATTCAAATTAGAAGTAATAATAAAAATTAATTGAGATTAAAAAAAAATAATAACGTAATTCCACTAAACAAAGAGATATGAACTTTAATTAGCATCCAAATTACTTATTGATCGGATAAACGTTACGAAGGAAAAAACAACCCAGTTTTTTCTCATTAAAATAAAGTAAGAAATTGAAGACCGAAACGGTTGCCATCGGAAAATGGATATCATCGCCGTCGAGGAACACAGAAACGGCCATTTTTAAAAACCTAATTTATATATATATATATATATACACACAACTTGAAACAAAGAGAAAAATTCATTTCTTTTTCAAATCTCAACTGTGGAGAAGAACTAAGTAAGACTAGTCTTGCCGGGTTTATCAGCAGCTTGAAGAGTTTTGTCGATGAGCTTACGAGCCTTTTTGCTACGGATCTCCACTCTGACGCTGGAGCTTTTGTCCATTTTGACGTAGGGTTTCTTCGATTTCTTCAACTTCCTCACCTTCGATTTTATCGATTGAACCAAACTCTCCAATTGAATCGCCATCGCCATTGTTGGAGAAGAAATGGAGGAGATAGAAAAAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTCTCATTAAAATAAAGTAAGAAATTGAAGACCGAAACGGTTGCCATCGGAAAATGGATATCATCGCCGTCGAGGAACACAGAAACGGCCATTTTTAAAAACCTAATTTATATATATATATATATATACACACAACTTGAAACAAAGAGAAAAATTCATTTCTTTTTCAAATCTCAACTGTGGAGAAGAACTAAGTAAGACTAGTCTTGCCGGGTTTATCAGCAGCTTGAAGAGTTTTGTCGATGAGCTTACGAGCCTTTTTGCTACGGATCTCCACTCTGACGCTGGAGCTTTTGTCCATTTTGACGTAGGGTTTCTTCGATTTCTTCAACTTCCTCACCTTCGATTTTATCGATTGAACCAAACTGTCCAATTGAATCGCCATCGCCATTGTTGGAGAAGAAAAAGGGGAGATAGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288465" ref_strand="+" ref_description="SGN-E288465 [cLES-8-C23]">
      <seq>cgagttttttttttttttttttttttgaactttaattagcatccaaattacttattgatcggataaacgttacgaaggaaaaaacaacccagttttttctcattaaaataaagtaagaaattgaagaccgaaacggttgccatcggaaaatggatatcatcgccgtcgaggaacacagaaacggccatttttaaaaacctaatttatatatatatatatatatacacacaacttgaaacaaagagaaaaattcatttctttttcaaatctcaactgtggagaagaactaagtaagactagtcttgccgggtttatcagcagcttgaagagttttgtcgatgagcttacgagcctttttgctacggatctccactctgacgctggagcttttgtccattttgacgtagggtttcttcgatttcttcaacttcctcaccttcgattttatcgattgaaccaaactctccaattgaatcgccatcgccattgttggagaagaaatggaggagatagaaaaatattgaatgattcaccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="+" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="86049" stop="106590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105094" g_stop="105115" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.682"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105116" i_stop="105774" i_length="659">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105775" g_stop="106290" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="538" r_length="516" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="+" ref_id="SGN-E288465" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105094" e_stop="105115"/>
          <exon e_start="105775" e_stop="106290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTATTTAATATTTTTTTCTATACAGAGGGTATAATCAAAACTTATTGAATTTTTGCAAATCCGTACCTAACATATTGGATTGGGATTATGAGTCCGTTTGAATAAGTAGATGATAAATTATAAGGGTTGAAATTAATCATAAGTTACAAATAAACAATTATTTAGTTGTGTTTGAATAGAAGTATTAAAACTATACTAATTAATTTATTTGATAGAAAAATAGTGATTAATAAGTTGTTCTTTTTATTTAAATGATTAAATTTTCCTTACTTTCAAAATGTAATGGTTTAAAAATAAGAAGAAAAGGAAAAACAACAAGATAAAGTCAAGAGTAAGTTAGGTGTTTTGGAATTTAAAAAATTAATAAGAAAATGTCAAATAAAAAAAAAGTAATACTAAATATAAGCTGAAAAAACTCATAAAAAAAGGATTGAGATTTTAATTCATGAACACTTAGGCATTTATTACATGAAATAGATAAATTAAAATTTGTTTATAAAACTAGTTCTTTTAAGACAATTCAAATGATGTGATTCCAATTATTCGTCGCACTCAATATATTAATTTACACGAGTTGATTAATATAAATCGCACTAGCAAAATATTCAAATTAGAAGTAATAATAAAAATTAATTGAGATTAAAAAAAAATAATAACGTAATTCCACTAAACAAAGAGATATGAACTTTAATTAGCATCCAAATTACTTATTGATCGGATAAACGTTACGAAGGAAAAAACAACCCAGTTTTTTCTCATTAAAATAAAGTAAGAAATTGAAGACCGAAACGGTTGCCATCGGAAAATGGATATCATCGCCGTCGAGGAACACAGAAACGGCCATTTTTAAAAACCTAATTTATATATATATATATATATACACACAACTTGAAACAAAGAGAAAAATTCATTTCTTTTTCAAATCTCAACTGTGGAGAAGAACTAAGTAAGACTAGTCTTGCCGGGTTTATCAGCAGCTTGAAGAGTTTTGTCGATGAGCTTACGAGCCTTTTTGCTACGGATCTCCACTCTGACGCTGGAGCTTTTGTCCATTTTGACGTAGGGTTTCTTCGATTTCTTCAACTTCCTCACCTTCGATTTTATCGATTGAACCAAACTCTCCAATTGAATCGCCATCGCCATTGTTGGAGAAGAAATGGAGGAGATAGAAAAATATTGAATGATTCACCAAAT</genome_strand>
        <mrna_strand>CGAGTTTTTTTTTTTTTTTTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGAACTTTAATTAGCATCCAAATTACTTATTGATCGGATAAACGTTACGAAGGAAAAAACAACCCAGTTTTTTCTCATTAAAATAAAGTAAGAAATTGAAGACCGAAACGGTTGCCATCGGAAAATGGATATCATCGCCGTCGAGGAACACAGAAACGGCCATTTTTAAAAACCTAATTTATATATATATATATATATACACACAACTTGAAACAAAGAGAAAAATTCATTTCTTTTTCAAATCTCAACTGTGGAGAAGAACTAAGTAAGACTAGTCTTGCCGGGTTTATCAGCAGCTTGAAGAGTTTTGTCGATGAGCTTACGAGCCTTTTTGCTACGGATCTCCACTCTGACGCTGGAGCTTTTGTCCATTTTGACGTAGGGTTTCTTCGATTTCTTCAACTTCCTCACCTTCGATTTTATCGATTGAACCAAACTCTCCAATTGAATCGCCATCGCCATTGTTGGAGAAGAAATGGAGGAGATAGAAAAATATTGAATGATTCACCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694388" ref_strand="+" ref_description="SGN-E694388 [LH_Ea03M18](-)">
      <seq>ccaacaacggcgatggggattcaattggagagtttggtccaatcgataaaatcgaaggtgaggaagttgaagaaatcgaagaaaccctacgtcaaaatggacaaaagctccagcgtcagagtggagatccgtagcaaaaaggcttgtaagctcatcgacaaaacttttcaagctgctgataaacccggcaagactagttttacttagtccttctccccagttgagatttgaaaaaaaaaagaatttttttttttgtttcaagttgggtatatatatattagatttttaaaaacggccgtttttgtgttcctcgacggggatgatatccattttccgatggcaaccgtttcggtcttcaattttttactttattttaatcagaaaaaaagtgggttgttttttcccttcgtaacgtttatccgatcaataaatagtttggatgctaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="106545" stop="105483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106245" g_stop="105783" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="452" polyA_stop="473"/>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E694388" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106245" e_stop="105783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACAATGGCGATGGCGATTCAATTGGAGAGTTTGGTTCAATCGATAAAATCGAAGGTGAGGAAGTTGAAGAAATCGAAGAAACCCTACGTCAAAATGGACAAAAGCTCCAGCGTCAGAGTGGAGATCCGTAGCAAAAAGGCTCGTAAGCTCATCGACAAAACTCTTCAAGCTGCTGATAAACCCGGCAAGACTAGTCTTACTTAGTTCTTCTCCACAGTTGAGATTTGAAAAAGAAATGAATTTTTCTCTTTGTTTCAAGTTGTGTGTATATATATATATATATATAAATTAGGTTTTTAAAAATGGCCGTTTCTGTGTTCCTCGACGGCGATGATATCCATTTTCCGATGGCAACCGTTTCGGTCTTCAATTTCTTACTTTATTTTAATGAG-AAAAAACTGGGTTGTTTTTT-CCTTCGTAACGTTTATCCGATCAATAAGTAATTTGGATGCTAATTAAA</genome_strand>
        <mrna_strand>CCAACAACGGCGATGGGGATTCAATTGGAGAGTTTGGTCCAATCGATAAAATCGAAGGTGAGGAAGTTGAAGAAATCGAAGAAACCCTACGTCAAAATGGACAAAAGCTCCAGCGTCAGAGTGGAGATCCGTAGCAAAAAGGCTTGTAAGCTCATCGACAAAACTTTTCAAGCTGCTGATAAACCCGGCAAGACTAGTTTTACTTAGTCCTTCTCCCCAGTTGAGATTTGAAAAAAAAAAGAATTTTTTTTTTTGTTTCAAGTTG-G-G----------TATATATAT--ATTAGATTTTTAAAAACGGCCGTTTTTGTGTTCCTCGACGGGGATGATATCCATTTTCCGATGGCAACCGTTTCGGTCTTCAATTTTTTACTTTATTTTAATCAGAAAAAAAGTGGGTTGTTTTTTCCCTTCGTAACGTTTATCCGATCAATAAATAGTTTGGATGCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690548" ref_strand="+" ref_description="SGN-E690548 [LH_Ea03M18]">
      <seq>tcaacaacggcgatggcgattcaattggagagtttggcctaatcgataaaatcgaaggtgaggaagttgaagaaatcgaagaaaccctacgtcaaaatggacaaaagctccagcgtcagagtggagatccgtagcaaaaaggctcgtaagctcatcgacaaaactcttcaagctgctgataaacccggcaagactagtcttacttagtccttctccacagttgagatttgaaaaaaaaatgaatttttctctttgtttcaagttgtgtatatatatattagatttttaaaaacggccgtttctgtgttcctcgacggcgatgatatccattttccgatggcaaccgtttcggtcttcaatttcttactttattttaatcagaaaaaaagtgggttgttttttcccttcgtaacgtttatccgatcaataagtaatttggatgctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="106544" stop="105483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106245" g_stop="105783" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="452" polyA_stop="474"/>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E690548" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106245" e_stop="105783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACAATGGCGATGGCGATTCAATTGGAGAGTTTGGTTCAATCGATAAAATCGAAGGTGAGGAAGTTGAAGAAATCGAAGAAACCCTACGTCAAAATGGACAAAAGCTCCAGCGTCAGAGTGGAGATCCGTAGCAAAAAGGCTCGTAAGCTCATCGACAAAACTCTTCAAGCTGCTGATAAACCCGGCAAGACTAGTCTTACTTAGTTCTTCTCCACAGTTGAGATTTGAAAAAGAAATGAATTTTTCTCTTTGTTTCAAGTTGTGTGTATATATATATATATATATAAATTAGGTTTTTAAAAATGGCCGTTTCTGTGTTCCTCGACGGCGATGATATCCATTTTCCGATGGCAACCGTTTCGGTCTTCAATTTCTTACTTTATTTTAATGAG-AAAAAACTGGGTTGTTTTTT-CCTTCGTAACGTTTATCCGATCAATAAGTAATTTGGATGCTAATTAAA</genome_strand>
        <mrna_strand>TCAACAACGGCGATGGCGATTCAATTGGAGAGTTTGGCCTAATCGATAAAATCGAAGGTGAGGAAGTTGAAGAAATCGAAGAAACCCTACGTCAAAATGGACAAAAGCTCCAGCGTCAGAGTGGAGATCCGTAGCAAAAAGGCTCGTAAGCTCATCGACAAAACTCTTCAAGCTGCTGATAAACCCGGCAAGACTAGTCTTACTTAGTCCTTCTCCACAGTTGAGATTTGAAAAAAAAATGAATTTTTCTCTTTGTTTCAAG-T-TGTG----------TATATATAT--ATTAGATTTTTAAAAACGGCCGTTTCTGTGTTCCTCGACGGCGATGATATCCATTTTCCGATGGCAACCGTTTCGGTCTTCAATTTCTTACTTTATTTTAATCAGAAAAAAAGTGGGTTGTTTTTTCCCTTCGTAACGTTTATCCGATCAATAAGTAATTTGGATGCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261732" ref_strand="+" ref_description="SGN-E261732 [cLEG-61-B12]">
      <seq>ttgtctcgttcacgtcaaacaacaaacagtttgcgggcattctcatcatcttcttcttctaaccagtctcgtggtggtcttccccgattctactccgataagcttcctccttccaaggatggcgttgttcgtgtcaaaggtgatgaattttggcacatgactagggtcttgaggttgagaattcatgatagggtagaactatttgatggaaaaggaggattagttgaaggctgtatacagaacattgatcagaatggattggatattgtggctctcgagaatccaaagtcagtatctccacataacacacagtggcatgtctatgctgcattcggtactctgaagggaggccgggccgattggcttgtggagaaatgtacagagctaggagcctgtagtgtgactcccttattgacggaccggtctccttcaatatcagaaaatcgtgtagatagattacaacgtgtcaatcttgctgcagctaaacaatgccaacggttgcatgaaatggttctaaatcctcctataaaaattggtggacttttaccccttgttaaaaattcaaagctttcgtttattgccacggcagaagctaaaccagtatttagtgctctaagttccatcaaaaaagaatcaactggactgatgataattggaccggaaggagacttcacggagagagagttaaacatgattcttgaggctggggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="112011" stop="108165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111711" g_stop="111595" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111594" i_stop="110903" i_length="692">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110902" g_stop="110829" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="191" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110828" i_stop="110347" i_length="482">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110346" g_stop="110204" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="334" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110203" i_stop="110118" i_length="86">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110117" g_stop="110071" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="381" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110070" i_stop="109983" i_length="88">
            <donor d_prob="0.005" d_score="1.00"/>
            <acceptor a_prob="0.175" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109982" g_stop="109874" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="490" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109873" i_stop="109777" i_length="97">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109776" g_stop="109715" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="552" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="109714" i_stop="109562" i_length="153">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.627" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="109561" g_stop="109447" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="667" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="109446" i_stop="108510" i_length="937">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="108509" g_stop="108465" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="712" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E261732" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111711" e_stop="111595"/>
          <exon e_start="110902" e_stop="110829"/>
          <exon e_start="110346" e_stop="110204"/>
          <exon e_start="110117" e_stop="110071"/>
          <exon e_start="109982" e_stop="109874"/>
          <exon e_start="109776" e_stop="109715"/>
          <exon e_start="109561" e_stop="109447"/>
          <exon e_start="108509" e_stop="108465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTCGTTCACGTCAAACAACAAACAGTTTGCGGGCATTCTCATCATCTTCTTCTTCTAACCAGTCTCGTGGTGGTCTTCCCCGATTCTACTCCGATAAGCTTCCTCCTTCCAAGGCAATGTCCATTTTCTTCTCTCACTCCTACTGTTTTTCTTTTCTCAAGAATGGGGTCTTAGATTTTATTGAGAAAAGAACAGGGTTTGTTAATTGATTCTGCAACAAACATTTCCAACTTTCTTGCTTGTAATTTGACTGTTGTCAACCGATTAACTGAAATTCTTGCTAGGGAAGGGTTCTTGATGTTACAACTGTCTTTATCATTACTGAAAGCCGGTTATTGAAAAAAGAATGGGGTTCTTGATTTATCGTCTAAGCCATGTCTGTATCCTTCCAAGGATTGTCCGTTTTTAAATAATGGGGTCTTGATTTTATTGAGAAAACAACAGGGTTAGGTTTGTATTATGTACTACCAATTGCTTCTGCAAGAAACATTCGAACTTTCATGCGCTTCAGTTGCCGGTTGTCAAACGATAAACTGAAATTCTTCTAGTGTAGGATTCTTGATGTTATAACTGTCTTTATCATAATGAATGCCGGCTATCTGAAGTTAACATAGGTAATTTGAAATCAAATGAGTCTAAGATAGAGCGGAGTGGATAATGAGGATCTTATACCCGACCCCAACTAGTTTAGACTTGAGGGTAGTTGTATCCTCTTTTTTTTTTCTGTAGCATTATTTTTATTGTATTCGGACCAGATGATTTAAGAGGCTAAGCTATGGTGTCTTTATGGCTTTTGAGAATGCAGGATGGCGTTGTTCGTGTCAAAGGTGATGAATTTTGGCACATGACTAGGGTCTTGAGGTTGAGAATTCATGATAGGTATTGCCTCACAACATATCTTGGATGTTTAACAGTGATATACAATTATGTGTCCTAGAGAATGGCTTGTTTAAAAGTATGCAAGTTGCAATTATGTGCATAGTTTAAGTATGCAAGTTGCAAACTATGAGAATGGCTTGTTTAAAAGTGTCATTACAATTGCTGCTTTATTTTGAATAAGGAATGTGAATGACCTTCAATTCGCCAACTTCCTATTATCTTTTAGAAGCGTTTTGTATTCCCTTTCCGGCTTCCCCTGTTCTCAATCTGGTTGTCCACTTTGGATTTTCGTAATATAGATTTTAGATCTGTCAATTCTATGAAGGATATGATTTTCAACAAGTAGTTGTTGATTTCCGTCTTAACATAAGCCAAAAGGGTTGTCCTAGAATAAGAAACATAGTTGGTGCCTGGGGTTCTATATAATCCTTTAACAATGGTACTGAGTTAATTTTACCTATTCATGATGCCCAATTTGCAAGGGTAGAACTATTTGATGGAAAAGGAGGATTAGTTGAAGGCTGTATACAGAACATTGATCAGAATGGATTGGATATTGTGGCTCTCGAGAATCCAAAGTCAGTATCTCCACATAACACACAGTGGCATGTCTATGCTGCATTCGGTGAGTGATTATGAGCATGGTTACTGGTGTTGTCTATAGATCATTTCTCTGCCTTGCATAATGTGCAGTAAATTCCTGCAATTTAGGTACTCTGAAGGGAGGCCGGGCCGATTGGCTTGTGGAGAAATGTACAGTATGTATGAATTGCCCATGTGAATATTGTGTCTCTCCTGAAGCTTTCAGCAACTTTTTTGTTCACTCTCTTTGTTCGATGGACACAGGAGCTAGGAGCCTGTAGTGTGACTCCCTTATTGACGGACCGGTCTCCTTCAATATCAGAAAATCGTGTAGATAGATTACAACGTGTCAATCTTGCTGCAGCTAAACAATGTAAGCTTTTCCACTCTGATACAAAATTTATTTTGTGCACTAATTTTCTTTGTGGGTGCTTGTGTTATGTTTTGACATTAACAGCATTTTGTTTTAGGCCAACGGTTGCATGAAATGGTTCTAAATCCTCCTATAAAAATTGGTGGACTTTTACCCCTTGTAAGTTGGTTTTTCTAATTTCCTCCCACAAAGTGAAATCTTTTTCAAAGCGAACAGCATATAGGAGATCCTTAAGACTATTTGTGGGTCATTCTCTTTGCAGAACTTACTCATTTTTCTTTTCTTTGTTTTGTGGTGCCACTTATGCTCAAGGTTAAAAATTCAAAGCTTTCGTTTATTGCCACGGCAGAAGCTAAACCAGTATTTAGTGCTCTAAGTTCCATCAAAAAAGAATCAACTGGACTGATGATAATTGGACCGGAAGGAGGTTAGTATCTTTCTGCAGCTTTTCCTCATCTTCCGGTCTATGCCCAAGATTTTGTGCCTTTATGCTGATGTTATTTTTGTTGGTCATAAGTCAATTATTTGATTATCTGAAGAAGTCCATTGTCCAGAATCCTGATGACAAGTGTAAGGAACATATATGCCCGAACATTTTTAGTAAAAGTAATCATCTTTTGGGTAGATGACTTATAAAACTAGGCTGTGTTTTAATGTGAAGCTCCAGTTTTGGATAATTTTTGTGTTGAAGCTCATTTGGCCTTTTAACTTCTAAAGAGGCTTTTCTATTTCAAGTAATAGGAGAATCCTTTGAAGCTAGTATAATACTCATCTTTATCCAAAAACTGGCAGAGTACCCATAATGTTGATTCTATATAAATTCTTAGGAGGGGGAAAGGAAAAATCTAGTATAAAGGAAAGAAGAAGACAGACAATAATTGAATGAAAAACATAGATTGCCAATGCTAGCCCTTTTGCTTCAACAGGCCATGCAACCTCCTGCTCCATTCTCCAATATCCACTTTGCTAGGCTAGAACAACACTCTCCATCCATACACCACCCGAACTCTAACCACAAACCCTATTTATCTTTCTCGCACTGCAGGAATTTCTTTGTACAATGCAGAGTTTGTTTTGTGATGATTTGGCTTCACATTTTGTGGTGCTTTTACAATCGCTTATGGGTGCACCAGTCCAATTTTGCAAGCTGAAGTGAGTTTAGACTCTCTTGTTTTGTCCTCATTATCCAGAAGTAAGAGTCCTTCAATAGTGGTGAAAAACAATTATGATAAAAGAATTTGGACCAAAACCAAAGAATAGGTTGCGGATACTAGACAATCTTACATACAACATTCAGATATTTATTTTAATTTATAATTTTCTTTTCGTTTGTATGTAATTATTGTGAACGCACTCCATTGTAGACTTCACGGAGAGAGAGTTAAACATGATTCTTGAGGCTGGGGCAA</genome_strand>
        <mrna_strand>TTGTCTCGTTCACGTCAAACAACAAACAGTTTGCGGGCATTCTCATCATCTTCTTCTTCTAACCAGTCTCGTGGTGGTCTTCCCCGATTCTACTCCGATAAGCTTCCTCCTTCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCGTTGTTCGTGTCAAAGGTGATGAATTTTGGCACATGACTAGGGTCTTGAGGTTGAGAATTCATGATAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGAACTATTTGATGGAAAAGGAGGATTAGTTGAAGGCTGTATACAGAACATTGATCAGAATGGATTGGATATTGTGGCTCTCGAGAATCCAAAGTCAGTATCTCCACATAACACACAGTGGCATGTCTATGCTGCATTCG......................................................................................GTACTCTGAAGGGAGGCCGGGCCGATTGGCTTGTGGAGAAATGTACA........................................................................................GAGCTAGGAGCCTGTAGTGTGACTCCCTTATTGACGGACCGGTCTCCTTCAATATCAGAAAATCGTGTAGATAGATTACAACGTGTCAATCTTGCTGCAGCTAAACAAT.................................................................................................GCCAACGGTTGCATGAAATGGTTCTAAATCCTCCTATAAAAATTGGTGGACTTTTACCCCTT.........................................................................................................................................................GTTAAAAATTCAAAGCTTTCGTTTATTGCCACGGCAGAAGCTAAACCAGTATTTAGTGCTCTAAGTTCCATCAAAAAAGAATCAACTGGACTGATGATAATTGGACCGGAAGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCACGGAGAGAGAGTTAAACATGATTCTTGAGGCTGGGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551153" ref_strand="+" ref_description="SGN-E551153 [TUS-55-I19]">
      <seq>cagggttgtctcgttcacgtcaaacaacaaacagtttgcgggcattctcatcatcttcttcttctaaccagtctcgtggtggtcttccccgattctactccgataagcttcctccttccaaggatggcgttgttcgtgtcaaaggtgatgaattttggcacatgactagggtcttgaggttgagaattcatgatagggtagaactatttgatggaaaaggaggattagttgaaggctgtatacagaacattgatcagaatggattggatattgtggctctcgagaatccaaagtcagtatctccacataacacacagtggcatgtctatgctgcattcggtactctgaagggaggccgggccgattggcttgtggagaaatgtacagagctaggagcctgtagtgtgactcccttattgacggaccggtctccttcaatatcagaaaatcgtgtagatagattacaacgtgtcaatcttgctgcagctaaacaatgccaacggttgcatgaaatggttctaaatcctcctataaaaattggtggacttttacccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="112012" stop="109415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111716" g_stop="111595" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111594" i_stop="110903" i_length="692">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110902" g_stop="110829" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="196" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110828" i_stop="110347" i_length="482">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110346" g_stop="110204" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="339" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110203" i_stop="110118" i_length="86">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110117" g_stop="110071" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="386" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110070" i_stop="109983" i_length="88">
            <donor d_prob="0.005" d_score="1.00"/>
            <acceptor a_prob="0.175" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109982" g_stop="109874" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="495" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109873" i_stop="109777" i_length="97">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109776" g_stop="109715" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="557" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E551153" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111716" e_stop="111595"/>
          <exon e_start="110902" e_stop="110829"/>
          <exon e_start="110346" e_stop="110204"/>
          <exon e_start="110117" e_stop="110071"/>
          <exon e_start="109982" e_stop="109874"/>
          <exon e_start="109776" e_stop="109715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTTGTCTCGTTCACGTCAAACAACAAACAGTTTGCGGGCATTCTCATCATCTTCTTCTTCTAACCAGTCTCGTGGTGGTCTTCCCCGATTCTACTCCGATAAGCTTCCTCCTTCCAAGGCAATGTCCATTTTCTTCTCTCACTCCTACTGTTTTTCTTTTCTCAAGAATGGGGTCTTAGATTTTATTGAGAAAAGAACAGGGTTTGTTAATTGATTCTGCAACAAACATTTCCAACTTTCTTGCTTGTAATTTGACTGTTGTCAACCGATTAACTGAAATTCTTGCTAGGGAAGGGTTCTTGATGTTACAACTGTCTTTATCATTACTGAAAGCCGGTTATTGAAAAAAGAATGGGGTTCTTGATTTATCGTCTAAGCCATGTCTGTATCCTTCCAAGGATTGTCCGTTTTTAAATAATGGGGTCTTGATTTTATTGAGAAAACAACAGGGTTAGGTTTGTATTATGTACTACCAATTGCTTCTGCAAGAAACATTCGAACTTTCATGCGCTTCAGTTGCCGGTTGTCAAACGATAAACTGAAATTCTTCTAGTGTAGGATTCTTGATGTTATAACTGTCTTTATCATAATGAATGCCGGCTATCTGAAGTTAACATAGGTAATTTGAAATCAAATGAGTCTAAGATAGAGCGGAGTGGATAATGAGGATCTTATACCCGACCCCAACTAGTTTAGACTTGAGGGTAGTTGTATCCTCTTTTTTTTTTCTGTAGCATTATTTTTATTGTATTCGGACCAGATGATTTAAGAGGCTAAGCTATGGTGTCTTTATGGCTTTTGAGAATGCAGGATGGCGTTGTTCGTGTCAAAGGTGATGAATTTTGGCACATGACTAGGGTCTTGAGGTTGAGAATTCATGATAGGTATTGCCTCACAACATATCTTGGATGTTTAACAGTGATATACAATTATGTGTCCTAGAGAATGGCTTGTTTAAAAGTATGCAAGTTGCAATTATGTGCATAGTTTAAGTATGCAAGTTGCAAACTATGAGAATGGCTTGTTTAAAAGTGTCATTACAATTGCTGCTTTATTTTGAATAAGGAATGTGAATGACCTTCAATTCGCCAACTTCCTATTATCTTTTAGAAGCGTTTTGTATTCCCTTTCCGGCTTCCCCTGTTCTCAATCTGGTTGTCCACTTTGGATTTTCGTAATATAGATTTTAGATCTGTCAATTCTATGAAGGATATGATTTTCAACAAGTAGTTGTTGATTTCCGTCTTAACATAAGCCAAAAGGGTTGTCCTAGAATAAGAAACATAGTTGGTGCCTGGGGTTCTATATAATCCTTTAACAATGGTACTGAGTTAATTTTACCTATTCATGATGCCCAATTTGCAAGGGTAGAACTATTTGATGGAAAAGGAGGATTAGTTGAAGGCTGTATACAGAACATTGATCAGAATGGATTGGATATTGTGGCTCTCGAGAATCCAAAGTCAGTATCTCCACATAACACACAGTGGCATGTCTATGCTGCATTCGGTGAGTGATTATGAGCATGGTTACTGGTGTTGTCTATAGATCATTTCTCTGCCTTGCATAATGTGCAGTAAATTCCTGCAATTTAGGTACTCTGAAGGGAGGCCGGGCCGATTGGCTTGTGGAGAAATGTACAGTATGTATGAATTGCCCATGTGAATATTGTGTCTCTCCTGAAGCTTTCAGCAACTTTTTTGTTCACTCTCTTTGTTCGATGGACACAGGAGCTAGGAGCCTGTAGTGTGACTCCCTTATTGACGGACCGGTCTCCTTCAATATCAGAAAATCGTGTAGATAGATTACAACGTGTCAATCTTGCTGCAGCTAAACAATGTAAGCTTTTCCACTCTGATACAAAATTTATTTTGTGCACTAATTTTCTTTGTGGGTGCTTGTGTTATGTTTTGACATTAACAGCATTTTGTTTTAGGCCAACGGTTGCATGAAATGGTTCTAAATCCTCCTATAAAAATTGGTGGACTTTTACCCCTT</genome_strand>
        <mrna_strand>CAGGGTTGTCTCGTTCACGTCAAACAACAAACAGTTTGCGGGCATTCTCATCATCTTCTTCTTCTAACCAGTCTCGTGGTGGTCTTCCCCGATTCTACTCCGATAAGCTTCCTCCTTCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCGTTGTTCGTGTCAAAGGTGATGAATTTTGGCACATGACTAGGGTCTTGAGGTTGAGAATTCATGATAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGAACTATTTGATGGAAAAGGAGGATTAGTTGAAGGCTGTATACAGAACATTGATCAGAATGGATTGGATATTGTGGCTCTCGAGAATCCAAAGTCAGTATCTCCACATAACACACAGTGGCATGTCTATGCTGCATTCG......................................................................................GTACTCTGAAGGGAGGCCGGGCCGATTGGCTTGTGGAGAAATGTACA........................................................................................GAGCTAGGAGCCTGTAGTGTGACTCCCTTATTGACGGACCGGTCTCCTTCAATATCAGAAAATCGTGTAGATAGATTACAACGTGTCAATCTTGCTGCAGCTAAACAAT.................................................................................................GCCAACGGTTGCATGAAATGGTTCTAAATCCTCCTATAAAAATTGGTGGACTTTTACCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688969" ref_strand="+" ref_description="SGN-E688969 [t3_tus_55_I19]">
      <seq>gggttgtctcgttcacgtcaaacaacaaacagtttgcgggcattctcatcatcttcttcttctaaccagtctcgtggtggtcttccccgattctactccgataagcttcctccttccaaggatggcgttgttcgtgtcaaaggtgatgaattttggcacatgactagggtcttgaggttgagaattcatgatagggtagaactatttgatggaaaaggaggattagttgaaggctgtatacagaacattgatcagaatggattggatattgtggctctcgagaatccaaagtcagtatctccacataacacacagtggcatgtctatgctgcattcggtactctgaagggaggccgggccgattggcttgtggagaaatgtacagagctaggagcctgtagtgtgactcccttattgacggaccggtctccttcaatatcagaaaatcgtgtagatagattacaacgtgtcaatcttgctgcagctaaacaatgccaacggttgcatgaaatggttctaaatcctcctataaaaattggtggacttttaccccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="112012" stop="109414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111714" g_stop="111595" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111594" i_stop="110903" i_length="692">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110902" g_stop="110829" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="194" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110828" i_stop="110347" i_length="482">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110346" g_stop="110204" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="337" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110203" i_stop="110118" i_length="86">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110117" g_stop="110071" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="384" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110070" i_stop="109983" i_length="88">
            <donor d_prob="0.005" d_score="1.00"/>
            <acceptor a_prob="0.175" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109982" g_stop="109874" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="493" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109873" i_stop="109777" i_length="97">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109776" g_stop="109715" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="555" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E688969" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111714" e_stop="111595"/>
          <exon e_start="110902" e_stop="110829"/>
          <exon e_start="110346" e_stop="110204"/>
          <exon e_start="110117" e_stop="110071"/>
          <exon e_start="109982" e_stop="109874"/>
          <exon e_start="109776" e_stop="109715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTGTCTCGTTCACGTCAAACAACAAACAGTTTGCGGGCATTCTCATCATCTTCTTCTTCTAACCAGTCTCGTGGTGGTCTTCCCCGATTCTACTCCGATAAGCTTCCTCCTTCCAAGGCAATGTCCATTTTCTTCTCTCACTCCTACTGTTTTTCTTTTCTCAAGAATGGGGTCTTAGATTTTATTGAGAAAAGAACAGGGTTTGTTAATTGATTCTGCAACAAACATTTCCAACTTTCTTGCTTGTAATTTGACTGTTGTCAACCGATTAACTGAAATTCTTGCTAGGGAAGGGTTCTTGATGTTACAACTGTCTTTATCATTACTGAAAGCCGGTTATTGAAAAAAGAATGGGGTTCTTGATTTATCGTCTAAGCCATGTCTGTATCCTTCCAAGGATTGTCCGTTTTTAAATAATGGGGTCTTGATTTTATTGAGAAAACAACAGGGTTAGGTTTGTATTATGTACTACCAATTGCTTCTGCAAGAAACATTCGAACTTTCATGCGCTTCAGTTGCCGGTTGTCAAACGATAAACTGAAATTCTTCTAGTGTAGGATTCTTGATGTTATAACTGTCTTTATCATAATGAATGCCGGCTATCTGAAGTTAACATAGGTAATTTGAAATCAAATGAGTCTAAGATAGAGCGGAGTGGATAATGAGGATCTTATACCCGACCCCAACTAGTTTAGACTTGAGGGTAGTTGTATCCTCTTTTTTTTTTCTGTAGCATTATTTTTATTGTATTCGGACCAGATGATTTAAGAGGCTAAGCTATGGTGTCTTTATGGCTTTTGAGAATGCAGGATGGCGTTGTTCGTGTCAAAGGTGATGAATTTTGGCACATGACTAGGGTCTTGAGGTTGAGAATTCATGATAGGTATTGCCTCACAACATATCTTGGATGTTTAACAGTGATATACAATTATGTGTCCTAGAGAATGGCTTGTTTAAAAGTATGCAAGTTGCAATTATGTGCATAGTTTAAGTATGCAAGTTGCAAACTATGAGAATGGCTTGTTTAAAAGTGTCATTACAATTGCTGCTTTATTTTGAATAAGGAATGTGAATGACCTTCAATTCGCCAACTTCCTATTATCTTTTAGAAGCGTTTTGTATTCCCTTTCCGGCTTCCCCTGTTCTCAATCTGGTTGTCCACTTTGGATTTTCGTAATATAGATTTTAGATCTGTCAATTCTATGAAGGATATGATTTTCAACAAGTAGTTGTTGATTTCCGTCTTAACATAAGCCAAAAGGGTTGTCCTAGAATAAGAAACATAGTTGGTGCCTGGGGTTCTATATAATCCTTTAACAATGGTACTGAGTTAATTTTACCTATTCATGATGCCCAATTTGCAAGGGTAGAACTATTTGATGGAAAAGGAGGATTAGTTGAAGGCTGTATACAGAACATTGATCAGAATGGATTGGATATTGTGGCTCTCGAGAATCCAAAGTCAGTATCTCCACATAACACACAGTGGCATGTCTATGCTGCATTCGGTGAGTGATTATGAGCATGGTTACTGGTGTTGTCTATAGATCATTTCTCTGCCTTGCATAATGTGCAGTAAATTCCTGCAATTTAGGTACTCTGAAGGGAGGCCGGGCCGATTGGCTTGTGGAGAAATGTACAGTATGTATGAATTGCCCATGTGAATATTGTGTCTCTCCTGAAGCTTTCAGCAACTTTTTTGTTCACTCTCTTTGTTCGATGGACACAGGAGCTAGGAGCCTGTAGTGTGACTCCCTTATTGACGGACCGGTCTCCTTCAATATCAGAAAATCGTGTAGATAGATTACAACGTGTCAATCTTGCTGCAGCTAAACAATGTAAGCTTTTCCACTCTGATACAAAATTTATTTTGTGCACTAATTTTCTTTGTGGGTGCTTGTGTTATGTTTTGACATTAACAGCATTTTGTTTTAGGCCAACGGTTGCATGAAATGGTTCTAAATCCTCCTATAAAAATTGGTGGACTTTTACCCCTT</genome_strand>
        <mrna_strand>GGGTTGTCTCGTTCACGTCAAACAACAAACAGTTTGCGGGCATTCTCATCATCTTCTTCTTCTAACCAGTCTCGTGGTGGTCTTCCCCGATTCTACTCCGATAAGCTTCCTCCTTCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCGTTGTTCGTGTCAAAGGTGATGAATTTTGGCACATGACTAGGGTCTTGAGGTTGAGAATTCATGATAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGAACTATTTGATGGAAAAGGAGGATTAGTTGAAGGCTGTATACAGAACATTGATCAGAATGGATTGGATATTGTGGCTCTCGAGAATCCAAAGTCAGTATCTCCACATAACACACAGTGGCATGTCTATGCTGCATTCG......................................................................................GTACTCTGAAGGGAGGCCGGGCCGATTGGCTTGTGGAGAAATGTACA........................................................................................GAGCTAGGAGCCTGTAGTGTGACTCCCTTATTGACGGACCGGTCTCCTTCAATATCAGAAAATCGTGTAGATAGATTACAACGTGTCAATCTTGCTGCAGCTAAACAAT.................................................................................................GCCAACGGTTGCATGAAATGGTTCTAAATCCTCCTATAAAAATTGGTGGACTTTTACCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369032" ref_strand="+" ref_description="SGN-E369032 [TUS-25-J3]">
      <seq>tcagtgtcaagtctgatgtttttgcgtttggtgttttgctcttaaactttataagcaaaaaagttgttgagaaaggaaaccccgtagataatgaggtacttgatttatgggccttgaaggagttcaagcccggatgttcacttgtccaccaaagttttgtgggtgatccaggttttggtcatcttgatgcagttgcaataacagaacttgctaaacgttgtgtagaagatcgaccaaagaaacgaccaaatatgaaagaagttgttgcttgtctagagaatttacatgttgtgtaggaccatggtgaagaaattaatgtgcatacttgatagttgggttttatttccgttgagtttagtggattttgttgtcacagtttgtggaaaaacatacgtgagtataggaagaaaagattattttagtatatatttaaatataaaaattacttatcatttaatcaagtgaaagattttggagaaaaaaaaaaaaaaaaaaaaaaacaaaaaaaaaaaaaaaactaaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="114937" stop="86044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114637" g_stop="114158" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114157" i_stop="112680" i_length="1478">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.71"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112679" g_stop="112635" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="525" r_length="45" r_score="0.711"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E369032" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114637" e_stop="114158"/>
          <exon e_start="112679" e_stop="112635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTGTCAAGTCTGATGTTTTTGCGTTTGGTGTTTTGCTCTTAAACTTTATAAGCAAAAAAGTTGTTGAGAAAGGAAACCCCGTAGATAATGAGGTACTTGATTTATGGGCCTTGAAGGAGTTCAAGCCCGGATGTTCACTTGTCCACCAAAGTTTTGTGGGTGATCCAGGTTTTGGTCATCTTGATGCAGTTGCAATAACAGAACTTGCTAAACGTTGTGTAGAAGATCGACCAAAGAAACGACCAAATATGAAAGAAGTTGTTGCTTGTCTAGAGAATTTACATGTTGTGTAGGACCATGGTGAAGAAATTAATGTGCATACTTGATAGTTGGGTTTTATTTCCGTTGAGTTTAGTGGATTTTGTTGTCACAGTTTGTGGAAAAACATACGTGAGTATAGGAAGAAAAGATTATTTTAGTATATATTTAAATATAAAAATTACTTATCATTTAATCAAGTGAAAGATTTTGGAGAAATGGGGTGTAGTATAGTACTATAGTATATTGTTTTGTCGATATGTGATGGCTTGACAATAAAGAGAAAAGTTCAATTGTATTCGTTTCATTTAACATTCGAGATGCATTAACCAAGGGTATCTTGAAAGTGTAGGAGAAAGAGGAAAGATATATTATTATACTTTGATGGCATGACAACTTACTCTCTTTTTTTCTTGGATCATATTAACCTTGTCAGATATATCGCTTGACTAGTTTTAACCTTTATATTTTGTTCTCAAACTCATGGTGTCCAACAAAAACATTGGGTTTAGACCCTCTTATTTTGTCCATGAAAGTGTCCTTCAAGAGTTGTGAATAACGATTATTATAACAAGGATTAATTTGAAACCTAAACTAAAGAAAAGCTTTGCGGATACTAGACAATCTTTCTTACATACAATATTCAGTAGTATTAATTAGTGGTGAAACACTTGTATTATTTATGGAGAATAAGAATGGCAAAATAATATATTCTTTCTTCTTTTTAAATGACTATCTAAGTCGTTATTAAAAATGGCATGAATATATATATATAAAAAAAAAGGTTCAGAACTATCAACAGATAATATGCTCAAATCATCATTTATTATATGATACATACTTTGAGTTTTAAATGCAATAATAACCTCATTGTAAAACTTCTTTGTAAGCTTGTTAAAACCACGTATAATGGTTTTAGCACTTGAGATTTAAAAACTCAAATGATTCCATTCACAGAAATATTCTAGTCCTTTGCATGAAATTTAACAAGATAAAAGAAAAATTTTTAATTTTGTAGTTGTTATGTTAAATATATTAAAATGCATGATTTTAAATTAATGTTATGTTAAAATGTACTAAGATACTTGATTTTAAATAGAGGTGTCAAAATGAACCGAAACATATATAACCAGCTCAATCCGTCCAACATTTTAAGGGTTGGGCTCAAGATAATTTTGAATTGGGTTCAATCTCAACTCATTCAAGCTTAATCCACTTGAGGAGAATTCTCAATTGGGCCCAATTCAATCTCCAATTTCACCCCTTTTTTAAATTTTTTATTTAGGTATGTTTCTATATTTAAAAGTATAAATTATTATATATTTAACATCTTTTGGGGTTTATCTATCAATTTGTTACTTTTTTAACAATTTTTTTAGGGAAATTCAAATTGTGATTATAAAAGTTAATTATCAATATGTTAAATTATTGAAATTAATCGGGTCAAATTATGGGTTCAAGATCCAACCCGTTTTTTAGCGCATTTGAGCCCAACCCATTTGAGCCCAAAGTAAACTTGGGCGGGTCAAGACTCAATCCGATTCCTACTCGATCCATTATAGTATTTTCAATTTCAACCCAACCCGCCTATTTTACACCTTTAATTTTGGGAAAATTGTATATAATAGCAAACTAATAACCTAAAATAAATAGCCCAATTGACAAAAAGAAGGTCTACCACCTCATCAACTTGGGTTCAAACCTTAAAAAAAAAATAAATAAATAAATAAATAAATAAATGG</genome_strand>
        <mrna_strand>TCAGTGTCAAGTCTGATGTTTTTGCGTTTGGTGTTTTGCTCTTAAACTTTATAAGCAAAAAAGTTGTTGAGAAAGGAAACCCCGTAGATAATGAGGTACTTGATTTATGGGCCTTGAAGGAGTTCAAGCCCGGATGTTCACTTGTCCACCAAAGTTTTGTGGGTGATCCAGGTTTTGGTCATCTTGATGCAGTTGCAATAACAGAACTTGCTAAACGTTGTGTAGAAGATCGACCAAAGAAACGACCAAATATGAAAGAAGTTGTTGCTTGTCTAGAGAATTTACATGTTGTGTAGGACCATGGTGAAGAAATTAATGTGCATACTTGATAGTTGGGTTTTATTTCCGTTGAGTTTAGTGGATTTTGTTGTCACAGTTTGTGGAAAAACATACGTGAGTATAGGAAGAAAAGATTATTTTAGTATATATTTAAATATAAAAATTACTTATCATTTAATCAAGTGAAAGATTTTGGAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAACTAAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249087" ref_strand="+" ref_description="SGN-E249087 [cLEF-49-J5]">
      <seq>ttgatttatgggccttgaaggactacaagcccggatgttcacttgtccaccaaagttttgtgggtgatccaagttttggtcatcttgatgcaggtgcaataacataacttgctaaacgttgtgtataagatcgaccaaagaaacgaccaaatatgaaagaagttgttgcttgtctagagaatttacatgttgtgtaggaccatggtgaagaaattaatgtgcatacttgatagttgggttttatttccgttgagtttaatggattttgttgtcacagtttgtggaaaaacatacgtgagtataggaagaaaagattattttagtatatatttaaatataaaaattacttatcatttaatcaagtgaaagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="114838" stop="113866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114538" g_stop="114166" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E249087" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114538" e_stop="114166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTATGGGCCTTGAAGGAGTTCAAGCCCGGATGTTCACTTGTCCACCAAAGTTTTGTGGGTGATCCAGGTTTTGGTCATCTTGATGCAGTTGCAATAACAGAACTTGCTAAACGTTGTGTAGAAGATCGACCAAAGAAACGACCAAATATGAAAGAAGTTGTTGCTTGTCTAGAGAATTTACATGTTGTGTAGGACCATGGTGAAGAAATTAATGTGCATACTTGATAGTTGGGTTTTATTTCCGTTGAGTTTAGTGGATTTTGTTGTCACAGTTTGTGGAAAAACATACGTGAGTATAGGAAGAAAAGATTATTTTAGTATATATTTAAATATAAAAATTACTTATCATTTAATCAAGTGAAAGATTT</genome_strand>
        <mrna_strand>TTGATTTATGGGCCTTGAAGGACTACAAGCCCGGATGTTCACTTGTCCACCAAAGTTTTGTGGGTGATCCAAGTTTTGGTCATCTTGATGCAGGTGCAATAACATAACTTGCTAAACGTTGTGTATAAGATCGACCAAAGAAACGACCAAATATGAAAGAAGTTGTTGCTTGTCTAGAGAATTTACATGTTGTGTAGGACCATGGTGAAGAAATTAATGTGCATACTTGATAGTTGGGTTTTATTTCCGTTGAGTTTAATGGATTTTGTTGTCACAGTTTGTGGAAAAACATACGTGAGTATAGGAAGAAAAGATTATTTTAGTATATATTTAAATATAAAAATTACTTATCATTTAATCAAGTGAAAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E687947" ref_strand="+" ref_description="SGN-E687947 [T3_tus_81_L23]">
      <seq>ccctttaagattcccatccattgtcggtgaagtccgtctctcccgtgattgccattgtttcaagaatcatgtttcgccggtgttttgctggatgcatcaatctgccttgcatacgaaagaaaggcccagttgatgaggaggaggaggaggattttcccgtgaaagatgaacttcataaactcacatcccaggacctaagtcgatttacagcccaattttctccggaaaatcttgttggagtcaccaacttaggaaagctctatcgtgggaagatggtcattgatgatattagcaaggatgtcgctgtcaagattataggtattgataaatggatatttcgatatacaggcgacgacagactggaaagattcgagtatgaattgaaatttttgcaagctccaaggattaagggcaatcccaatttagtgaaagtgattggatattgtgaagaggaagagaccttgggtattgtttatgatctaaatccacatgatattttggagaacttaattactcgagctgacttcaattggatgctgagagttaggacagcccttacattagctcgcttgcttaattatctgcatgataggaaatacctcattcgcaactttgctccatatcacattgtgcttgaccaggatttcacgccaattatgtttgagttgggtttgattgttggaggagttctcggtaatacaatcaatgaatcaaatatgaaatgtgctccttatggctacatcgattcatacatatttccaatgtggaactgatacatttcatgtccaagtctgatgtttttgcctttggtgttttgctcttaaactttataaccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="117433" stop="114277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117141" g_stop="117052" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117051" i_stop="116840" i_length="212">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116839" g_stop="116556" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="374" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116555" i_stop="116480" i_length="76">
            <donor d_prob="0.432" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116479" g_stop="116335" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="519" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116334" i_stop="116090" i_length="245">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116089" g_stop="115968" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="641" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115967" i_stop="115854" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115853" g_stop="115724" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="772" r_length="131" r_score="0.954"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115723" i_stop="114644" i_length="1080">
            <donor d_prob="0.901" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114643" g_stop="114577" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="840" r_length="68" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E687947" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117141" e_stop="117052"/>
          <exon e_start="116839" e_stop="116556"/>
          <exon e_start="116479" e_stop="116335"/>
          <exon e_start="116089" e_stop="115968"/>
          <exon e_start="115853" e_stop="115724"/>
          <exon e_start="114643" e_stop="114577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTTGATTCCCATCCATTGTCGGTGAAGTCCGTCTCTCCCGTGATTGCCATTGTTTCAAGAATCATGTTTCGCCGGTGTTTTGCTGGTGGGTATCTTCCATCTCTATGTAGTTATCTCAAATTATCTATTTGCTTTTCTAGGGTTTTCCTGTATATAGAATTACATTTCTATTTATTTTGATTGTTTGCAATTTTATTTTTATTTTGATTGTGTATGGAGGCAGAAATTCAAAAATGGGATTTTTTGATACTGAATACATAGTGTATTTGTTTCTTCTTTCTCACTTGTTTTTTCCAGGATGCATCAATCTGCCTTGCATACGAAAGAAAGGCCCAGTTGATGAGGAGGAGGAGGAGGATTTTCCCGTGAAAGATGAACTTCATAAACTCACATCCCAGGACCTAAGTCGATTTACAGCCCAATTTTCTCCGGAAAATCTTGTTGGAGTCACCAACTTAGGAAAGCTCTATCGTGGGAAGATGGTCATTGATGATATTAGCAAGGATGTCGCTGTCAAGATTATAGGTATTGATAAATGGATATTTCGATATACAGGCGACGACAGACTGGAAAGATTCGAGGTTTGTGTGTACGTGCAAGCTCATAGTCTTCCTTCCTTACCTTATCTGACTCTTTTCTTCGTTTATGCTTCCGTAGTATGAATTGAAATTTTTGCAAGCTCCAAGGATTAAGGGCAATCCCAATTTAGTGAAAGTGATTGGATATTGTGAAGAGGAAGAGACCTTGGGTATTGTTTATGATCTAAATCCACATGATATTTTGGAGAACTTAATTACTCGAGGTGTGCTTCTATCTTTACTCATCTTTTATCTATTTTGCTGCTGTTAAGTACGTTTGCTATAGCTATATTTGGGCTCAAACCAAGGCAATAGTGAGTCTTTTGAGCAAAGAAACTCTAGTCATTAATAGGGCAAAGTAGCTATATTATTACCAGAATACAAATGTGGGGAGGAGACATGACATGCAGTGAATCTCCTTATCCAAGAATTCATAGGAGACACAGTTGACATTCCTATTACTTTTCAGCTGACTTCAATTGGATGCTGAGAGTTAGGACAGCCCTTACATTAGCTCGCTTGCTTAATTATCTGCATGATAGGAAATACCTCATTCGCAACTTTGCTCCATATCACATTGTGCTTGACCAGGTACAATATTGCAATTTCATTTTGTTGTTCAATATTCTTGGTTGTCAAGATTCTATTATGTTTGTATTTCAGTAATTTGAGTGCCTGAAGATGTTTTGCGTTTCATCTCTCTAGGATTTCACGCCAATTATGTTTGAGTTGGGTTTGATTGTTGGAGGAGTTCTCGGTAATACAATCAATGAATCAGATATGAGATGTGCTCCATATGGCTACATCGATTCATACATATTT-CAATGTGGTACTGGTACGACTCGAGTTCTCTTCTTTTGTTTCCGTTAAATAGAACTCTAGCGAATTAGTGTTACTTTTATTGTTGCATCAAATGATATGGTGGACAGAGTGCTACCCGCTATTCGGTATCTATGCGCGGGATTGCGGGTAGAGAAGTATCCGATGGATCAGTGGAGGAAAGCATAAGTTGGTGCTGAGAACACTTCCATAAAAGAAAGAAAAAAATAGTGTTATTTCATTGTCACATGATACTGAAAGTAATATTTTCTTTAGAGGTGCTCACAATTTTATGTCCTTGAGAGTTTTTTTTTTTTGAGACATTTCTCAGTAGTTTTCTTTGAGTTGTTCTCCTCAATTTCCTTGTGTTCGTTTTAATAGAAGCTGACGTTATGTTTGAAATGAGGGGATGTAGAAAAAAATAGAAGGAAAAGAGGCTAATGATTTGTGTAGTTTTGTGTTTGAAATGAATGCTTCATTGGTCGTCTACCTTGCTAGTTTGTTGCCGTTATTTTTTTTTTTTCGTTCTAGCCTTTTTGGTAATGTGTTCATGTGTAGTGTGTTTATTGGAAACCTCTTTACCCCACAAAGGTATGGGGAGGAGGGGGTATAGTCAACATATATCCTACCTTCCGTAGACGACCTCACTTGTGGGATTAAACCGGGTATATTGTTATTGTTGTGTTTCAAATGAATCATCCTTCCCACTCTCTTTTCTTCCATTCCTTTCCTCTCCACTGTAAATAAATATACCCTTTGGGTTTCACAAAACAATAATAGTTATGGTTGGTCTGGTGTGATATAATTTGCAGATGTGTAGATGGGGAGAGCTTATTAAAGTATTGTTTATATATTTATATAGATTTTTTTGTTGATTTCTATTTTTTTATGTTCCCTTTTCATTTGTGGTTTCATTTTATTCTTGTAATTTTTGATGTGTTTCATTCTTTTGCATTTCCAAAAATAAAATAAAAAATCATGTGCCACTTAACTTGAGAAGTCAAGACTCTAAGATTGTTATTAATTTTATCTGTCCTGCTTAAGCTTCTTTTCGTTACCCGATAACCATGTTTGTACTTTGTCAAATACTTTGCAGATACATTCAGTGT-CAAGTCTGATGTTTTTGCGTTTGGTGTTTTGCTCTTAAACTTTATAAGCAAAAA</genome_strand>
        <mrna_strand>CCCTTTAAGATTCCCATCCATTGTCGGTGAAGTCCGTCTCTCCCGTGATTGCCATTGTTTCAAGAATCATGTTTCGCCGGTGTTTTGCTG....................................................................................................................................................................................................................GATGCATCAATCTGCCTTGCATACGAAAGAAAGGCCCAGTTGATGAGGAGGAGGAGGAGGATTTTCCCGTGAAAGATGAACTTCATAAACTCACATCCCAGGACCTAAGTCGATTTACAGCCCAATTTTCTCCGGAAAATCTTGTTGGAGTCACCAACTTAGGAAAGCTCTATCGTGGGAAGATGGTCATTGATGATATTAGCAAGGATGTCGCTGTCAAGATTATAGGTATTGATAAATGGATATTTCGATATACAGGCGACGACAGACTGGAAAGATTCGAG............................................................................TATGAATTGAAATTTTTGCAAGCTCCAAGGATTAAGGGCAATCCCAATTTAGTGAAAGTGATTGGATATTGTGAAGAGGAAGAGACCTTGGGTATTGTTTATGATCTAAATCCACATGATATTTTGGAGAACTTAATTACTCGAG.....................................................................................................................................................................................................................................................CTGACTTCAATTGGATGCTGAGAGTTAGGACAGCCCTTACATTAGCTCGCTTGCTTAATTATCTGCATGATAGGAAATACCTCATTCGCAACTTTGCTCCATATCACATTGTGCTTGACCAG..................................................................................................................GATTTCACGCCAATTATGTTTGAGTTGGGTTTGATTGTTGGAGGAGTTCTCGGTAATACAATCAATGAATCAAATATGAAATGTGCTCCTTATGGCTACATCGATTCATACATATTTCCAATGTGGAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATTTCATGTCCAAGTCTGATGTTTTTGCCTTTGGTGTTTTGCTCTTAAACTTTATAACCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328473" ref_strand="+" ref_description="SGN-E328473 [cTOC-21-N24]">
      <seq>tttgattcccatccattgtcggtgaagtccgtctctcccgtgattgccattgtttcaagaatcatgtttcgccggtgttttgctggatgcatcaatctgccttgcatacgaaagaaaggcccagttgatgaggaggaggaggaggattttcccgtgaaagatgaacttcataaactcacatcccaggacctaagtcgatttacagcccaattttctccggaaaatcttgttggagtcaccaacttaggaaagctctatcgtgggaagatggtcattgatgatattagcaaggatgtcgctgtcaagattataggtattgataaatggatatttcgatatacaggcgacgacagactggaaagattcgagtatgaattgaaatttttgcaagctccaaggattaagggcaatcccaatttagtgaaagtgattggatattgtgaagaggaagagaccttgggtattgtttatgatctaaatccacatgatattttggagaacttaattactcgagctgacttcaattggatgctgagagttaggacagcccttacattagctcgcttgcttaattatctgcatgataggaaatacctcattcgcaactttgctccatatcacattgtgcttgaccaggatttcacgccaattatgtttgagttgggtttgattgttggaggagttctcggtaatacnatcaatgaatcagatatgagatgtgctccatatggctacatcgattcatacatatttcaatgtggtactgatacattcagtgtcaagtctgatgtttttgcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="117436" stop="114310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117136" g_stop="117052" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117051" i_stop="116840" i_length="212">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116839" g_stop="116556" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="369" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116555" i_stop="116480" i_length="76">
            <donor d_prob="0.432" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116479" g_stop="116335" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="514" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116334" i_stop="116090" i_length="245">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116089" g_stop="115968" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="636" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115967" i_stop="115854" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115853" g_stop="115724" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="766" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115723" i_stop="114644" i_length="1080">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114643" g_stop="114610" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="800" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E328473" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117136" e_stop="117052"/>
          <exon e_start="116839" e_stop="116556"/>
          <exon e_start="116479" e_stop="116335"/>
          <exon e_start="116089" e_stop="115968"/>
          <exon e_start="115853" e_stop="115724"/>
          <exon e_start="114643" e_stop="114610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTCCCATCCATTGTCGGTGAAGTCCGTCTCTCCCGTGATTGCCATTGTTTCAAGAATCATGTTTCGCCGGTGTTTTGCTGGTGGGTATCTTCCATCTCTATGTAGTTATCTCAAATTATCTATTTGCTTTTCTAGGGTTTTCCTGTATATAGAATTACATTTCTATTTATTTTGATTGTTTGCAATTTTATTTTTATTTTGATTGTGTATGGAGGCAGAAATTCAAAAATGGGATTTTTTGATACTGAATACATAGTGTATTTGTTTCTTCTTTCTCACTTGTTTTTTCCAGGATGCATCAATCTGCCTTGCATACGAAAGAAAGGCCCAGTTGATGAGGAGGAGGAGGAGGATTTTCCCGTGAAAGATGAACTTCATAAACTCACATCCCAGGACCTAAGTCGATTTACAGCCCAATTTTCTCCGGAAAATCTTGTTGGAGTCACCAACTTAGGAAAGCTCTATCGTGGGAAGATGGTCATTGATGATATTAGCAAGGATGTCGCTGTCAAGATTATAGGTATTGATAAATGGATATTTCGATATACAGGCGACGACAGACTGGAAAGATTCGAGGTTTGTGTGTACGTGCAAGCTCATAGTCTTCCTTCCTTACCTTATCTGACTCTTTTCTTCGTTTATGCTTCCGTAGTATGAATTGAAATTTTTGCAAGCTCCAAGGATTAAGGGCAATCCCAATTTAGTGAAAGTGATTGGATATTGTGAAGAGGAAGAGACCTTGGGTATTGTTTATGATCTAAATCCACATGATATTTTGGAGAACTTAATTACTCGAGGTGTGCTTCTATCTTTACTCATCTTTTATCTATTTTGCTGCTGTTAAGTACGTTTGCTATAGCTATATTTGGGCTCAAACCAAGGCAATAGTGAGTCTTTTGAGCAAAGAAACTCTAGTCATTAATAGGGCAAAGTAGCTATATTATTACCAGAATACAAATGTGGGGAGGAGACATGACATGCAGTGAATCTCCTTATCCAAGAATTCATAGGAGACACAGTTGACATTCCTATTACTTTTCAGCTGACTTCAATTGGATGCTGAGAGTTAGGACAGCCCTTACATTAGCTCGCTTGCTTAATTATCTGCATGATAGGAAATACCTCATTCGCAACTTTGCTCCATATCACATTGTGCTTGACCAGGTACAATATTGCAATTTCATTTTGTTGTTCAATATTCTTGGTTGTCAAGATTCTATTATGTTTGTATTTCAGTAATTTGAGTGCCTGAAGATGTTTTGCGTTTCATCTCTCTAGGATTTCACGCCAATTATGTTTGAGTTGGGTTTGATTGTTGGAGGAGTTCTCGGTAATACAATCAATGAATCAGATATGAGATGTGCTCCATATGGCTACATCGATTCATACATATTTCAATGTGGTACTGGTACGACTCGAGTTCTCTTCTTTTGTTTCCGTTAAATAGAACTCTAGCGAATTAGTGTTACTTTTATTGTTGCATCAAATGATATGGTGGACAGAGTGCTACCCGCTATTCGGTATCTATGCGCGGGATTGCGGGTAGAGAAGTATCCGATGGATCAGTGGAGGAAAGCATAAGTTGGTGCTGAGAACACTTCCATAAAAGAAAGAAAAAAATAGTGTTATTTCATTGTCACATGATACTGAAAGTAATATTTTCTTTAGAGGTGCTCACAATTTTATGTCCTTGAGAGTTTTTTTTTTTTGAGACATTTCTCAGTAGTTTTCTTTGAGTTGTTCTCCTCAATTTCCTTGTGTTCGTTTTAATAGAAGCTGACGTTATGTTTGAAATGAGGGGATGTAGAAAAAAATAGAAGGAAAAGAGGCTAATGATTTGTGTAGTTTTGTGTTTGAAATGAATGCTTCATTGGTCGTCTACCTTGCTAGTTTGTTGCCGTTATTTTTTTTTTTTCGTTCTAGCCTTTTTGGTAATGTGTTCATGTGTAGTGTGTTTATTGGAAACCTCTTTACCCCACAAAGGTATGGGGAGGAGGGGGTATAGTCAACATATATCCTACCTTCCGTAGACGACCTCACTTGTGGGATTAAACCGGGTATATTGTTATTGTTGTGTTTCAAATGAATCATCCTTCCCACTCTCTTTTCTTCCATTCCTTTCCTCTCCACTGTAAATAAATATACCCTTTGGGTTTCACAAAACAATAATAGTTATGGTTGGTCTGGTGTGATATAATTTGCAGATGTGTAGATGGGGAGAGCTTATTAAAGTATTGTTTATATATTTATATAGATTTTTTTGTTGATTTCTATTTTTTTATGTTCCCTTTTCATTTGTGGTTTCATTTTATTCTTGTAATTTTTGATGTGTTTCATTCTTTTGCATTTCCAAAAATAAAATAAAAAATCATGTGCCACTTAACTTGAGAAGTCAAGACTCTAAGATTGTTATTAATTTTATCTGTCCTGCTTAAGCTTCTTTTCGTTACCCGATAACCATGTTTGTACTTTGTCAAATACTTTGCAGATACATTCAGTGTCAAGTCTGATGTTTTTGCGTT</genome_strand>
        <mrna_strand>TTTGATTCCCATCCATTGTCGGTGAAGTCCGTCTCTCCCGTGATTGCCATTGTTTCAAGAATCATGTTTCGCCGGTGTTTTGCTG....................................................................................................................................................................................................................GATGCATCAATCTGCCTTGCATACGAAAGAAAGGCCCAGTTGATGAGGAGGAGGAGGAGGATTTTCCCGTGAAAGATGAACTTCATAAACTCACATCCCAGGACCTAAGTCGATTTACAGCCCAATTTTCTCCGGAAAATCTTGTTGGAGTCACCAACTTAGGAAAGCTCTATCGTGGGAAGATGGTCATTGATGATATTAGCAAGGATGTCGCTGTCAAGATTATAGGTATTGATAAATGGATATTTCGATATACAGGCGACGACAGACTGGAAAGATTCGAG............................................................................TATGAATTGAAATTTTTGCAAGCTCCAAGGATTAAGGGCAATCCCAATTTAGTGAAAGTGATTGGATATTGTGAAGAGGAAGAGACCTTGGGTATTGTTTATGATCTAAATCCACATGATATTTTGGAGAACTTAATTACTCGAG.....................................................................................................................................................................................................................................................CTGACTTCAATTGGATGCTGAGAGTTAGGACAGCCCTTACATTAGCTCGCTTGCTTAATTATCTGCATGATAGGAAATACCTCATTCGCAACTTTGCTCCATATCACATTGTGCTTGACCAG..................................................................................................................GATTTCACGCCAATTATGTTTGAGTTGGGTTTGATTGTTGGAGGAGTTCTCGGTAATACNATCAATGAATCAGATATGAGATGTGCTCCATATGGCTACATCGATTCATACATATTTCAATGTGGTACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATTCAGTGTCAAGTCTGATGTTTTTGCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336674" ref_strand="+" ref_description="SGN-E336674 [cTOE-4-J14]">
      <seq>gtgattgccattgtttcaagaatcatgtctcgccggtgttttgctggatgcatcaatctgccttgcatacgaaagaaaggcccatttgatgaggacgaggaggaggattttcccgtgaaagatgaacttcataaactcacatcccatgacctaattcgatttacagcccaattttctccggaaaatcttgttggagtcaccaacttaggaaagctctatcgtgggaagatggtcattgatgatattagcaaggatgtcgctgtcaagattataggtattgataaatggatatttcgatatacaggcgacgacagactggaaagattcgagtatgaattgaaatttttgcaagctccaaggattaagggcaatcccaatttagtgaaagtgattggatattgtgaagaggaagagaccttgggtattgtttatgatctaaatccacatgatattttggagaacttaattactcgagctgacttcaattggatgctgagagttaggacagcccttacattagctcgcttgcttaattatctgcatgataggaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="117397" stop="115711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117097" g_stop="117052" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117051" i_stop="116840" i_length="212">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116839" g_stop="116556" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="330" r_length="284" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116555" i_stop="116480" i_length="76">
            <donor d_prob="0.432" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116479" g_stop="116335" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="475" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116334" i_stop="116090" i_length="245">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116089" g_stop="116011" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="554" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E336674" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117097" e_stop="117052"/>
          <exon e_start="116839" e_stop="116556"/>
          <exon e_start="116479" e_stop="116335"/>
          <exon e_start="116089" e_stop="116011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTGCCATTGTTTCAAGAATCATGTTTCGCCGGTGTTTTGCTGGTGGGTATCTTCCATCTCTATGTAGTTATCTCAAATTATCTATTTGCTTTTCTAGGGTTTTCCTGTATATAGAATTACATTTCTATTTATTTTGATTGTTTGCAATTTTATTTTTATTTTGATTGTGTATGGAGGCAGAAATTCAAAAATGGGATTTTTTGATACTGAATACATAGTGTATTTGTTTCTTCTTTCTCACTTGTTTTTTCCAGGATGCATCAATCTGCCTTGCATACGAAAGAAAGGCCCAGTTGATGAGGAGGAGGAGGAGGATTTTCCCGTGAAAGATGAACTTCATAAACTCACATCCCAGGACCTAAGTCGATTTACAGCCCAATTTTCTCCGGAAAATCTTGTTGGAGTCACCAACTTAGGAAAGCTCTATCGTGGGAAGATGGTCATTGATGATATTAGCAAGGATGTCGCTGTCAAGATTATAGGTATTGATAAATGGATATTTCGATATACAGGCGACGACAGACTGGAAAGATTCGAGGTTTGTGTGTACGTGCAAGCTCATAGTCTTCCTTCCTTACCTTATCTGACTCTTTTCTTCGTTTATGCTTCCGTAGTATGAATTGAAATTTTTGCAAGCTCCAAGGATTAAGGGCAATCCCAATTTAGTGAAAGTGATTGGATATTGTGAAGAGGAAGAGACCTTGGGTATTGTTTATGATCTAAATCCACATGATATTTTGGAGAACTTAATTACTCGAGGTGTGCTTCTATCTTTACTCATCTTTTATCTATTTTGCTGCTGTTAAGTACGTTTGCTATAGCTATATTTGGGCTCAAACCAAGGCAATAGTGAGTCTTTTGAGCAAAGAAACTCTAGTCATTAATAGGGCAAAGTAGCTATATTATTACCAGAATACAAATGTGGGGAGGAGACATGACATGCAGTGAATCTCCTTATCCAAGAATTCATAGGAGACACAGTTGACATTCCTATTACTTTTCAGCTGACTTCAATTGGATGCTGAGAGTTAGGACAGCCCTTACATTAGCTCGCTTGCTTAATTATCTGCATGATAGGAAATA</genome_strand>
        <mrna_strand>GTGATTGCCATTGTTTCAAGAATCATGTCTCGCCGGTGTTTTGCTG....................................................................................................................................................................................................................GATGCATCAATCTGCCTTGCATACGAAAGAAAGGCCCATTTGATGAGGACGAGGAGGAGGATTTTCCCGTGAAAGATGAACTTCATAAACTCACATCCCATGACCTAATTCGATTTACAGCCCAATTTTCTCCGGAAAATCTTGTTGGAGTCACCAACTTAGGAAAGCTCTATCGTGGGAAGATGGTCATTGATGATATTAGCAAGGATGTCGCTGTCAAGATTATAGGTATTGATAAATGGATATTTCGATATACAGGCGACGACAGACTGGAAAGATTCGAG............................................................................TATGAATTGAAATTTTTGCAAGCTCCAAGGATTAAGGGCAATCCCAATTTAGTGAAAGTGATTGGATATTGTGAAGAGGAAGAGACCTTGGGTATTGTTTATGATCTAAATCCACATGATATTTTGGAGAACTTAATTACTCGAG.....................................................................................................................................................................................................................................................CTGACTTCAATTGGATGCTGAGAGTTAGGACAGCCCTTACATTAGCTCGCTTGCTTAATTATCTGCATGATAGGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335103" ref_strand="+" ref_description="SGN-E335103 [cTOE-1-K13]">
      <seq>tcttttctaaataaaaaaaaaaaagaaaaagaatttgattcccatccattgtcggtgaagtccgtctctcccgtgattgccattgtttcaagaatcatgtttcgccggtgttttgctggatgcatcaatctgccttgcatacgaaagaaaggcccagttgatgaggaggaggaggaggattttcccgtgaaagatgaacttcataaactcacatcccaggacctaagtcgatttacagcccaattttctccggaaaatcttgttggagtcaccaacttaggaaagctctatcgtgggaagatggtcattgatgatattagcaaggatgtcgctgtcaagattataggtattgataaatggatatttcgatatacaggcgacgacagactggaaagattcgagtatgaattgaaatttttgcaagctccaaggattaagggcaatcccaatttagtgaaagtgattggatattgtgaagaggaagagaccttgggtattgtttatgatctaaatccacatgatattttggagaacttaattactcgagctgacttcaattggatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="117469" stop="115770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117169" g_stop="117052" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117051" i_stop="116840" i_length="212">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116839" g_stop="116556" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="402" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116555" i_stop="116480" i_length="76">
            <donor d_prob="0.432" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116479" g_stop="116335" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="547" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116334" i_stop="116090" i_length="245">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116089" g_stop="116070" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="567" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E335103" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117169" e_stop="117052"/>
          <exon e_start="116839" e_stop="116556"/>
          <exon e_start="116479" e_stop="116335"/>
          <exon e_start="116089" e_stop="116070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCTAAATAAAAAAAAAAAAGAAAAAGAATTTGATTCCCATCCATTGTCGGTGAAGTCCGTCTCTCCCGTGATTGCCATTGTTTCAAGAATCATGTTTCGCCGGTGTTTTGCTGGTGGGTATCTTCCATCTCTATGTAGTTATCTCAAATTATCTATTTGCTTTTCTAGGGTTTTCCTGTATATAGAATTACATTTCTATTTATTTTGATTGTTTGCAATTTTATTTTTATTTTGATTGTGTATGGAGGCAGAAATTCAAAAATGGGATTTTTTGATACTGAATACATAGTGTATTTGTTTCTTCTTTCTCACTTGTTTTTTCCAGGATGCATCAATCTGCCTTGCATACGAAAGAAAGGCCCAGTTGATGAGGAGGAGGAGGAGGATTTTCCCGTGAAAGATGAACTTCATAAACTCACATCCCAGGACCTAAGTCGATTTACAGCCCAATTTTCTCCGGAAAATCTTGTTGGAGTCACCAACTTAGGAAAGCTCTATCGTGGGAAGATGGTCATTGATGATATTAGCAAGGATGTCGCTGTCAAGATTATAGGTATTGATAAATGGATATTTCGATATACAGGCGACGACAGACTGGAAAGATTCGAGGTTTGTGTGTACGTGCAAGCTCATAGTCTTCCTTCCTTACCTTATCTGACTCTTTTCTTCGTTTATGCTTCCGTAGTATGAATTGAAATTTTTGCAAGCTCCAAGGATTAAGGGCAATCCCAATTTAGTGAAAGTGATTGGATATTGTGAAGAGGAAGAGACCTTGGGTATTGTTTATGATCTAAATCCACATGATATTTTGGAGAACTTAATTACTCGAGGTGTGCTTCTATCTTTACTCATCTTTTATCTATTTTGCTGCTGTTAAGTACGTTTGCTATAGCTATATTTGGGCTCAAACCAAGGCAATAGTGAGTCTTTTGAGCAAAGAAACTCTAGTCATTAATAGGGCAAAGTAGCTATATTATTACCAGAATACAAATGTGGGGAGGAGACATGACATGCAGTGAATCTCCTTATCCAAGAATTCATAGGAGACACAGTTGACATTCCTATTACTTTTCAGCTGACTTCAATTGGATGCTG</genome_strand>
        <mrna_strand>TCTTTTCTAAATAAAAAAAAAAAAGAAAAAGAATTTGATTCCCATCCATTGTCGGTGAAGTCCGTCTCTCCCGTGATTGCCATTGTTTCAAGAATCATGTTTCGCCGGTGTTTTGCTG....................................................................................................................................................................................................................GATGCATCAATCTGCCTTGCATACGAAAGAAAGGCCCAGTTGATGAGGAGGAGGAGGAGGATTTTCCCGTGAAAGATGAACTTCATAAACTCACATCCCAGGACCTAAGTCGATTTACAGCCCAATTTTCTCCGGAAAATCTTGTTGGAGTCACCAACTTAGGAAAGCTCTATCGTGGGAAGATGGTCATTGATGATATTAGCAAGGATGTCGCTGTCAAGATTATAGGTATTGATAAATGGATATTTCGATATACAGGCGACGACAGACTGGAAAGATTCGAG............................................................................TATGAATTGAAATTTTTGCAAGCTCCAAGGATTAAGGGCAATCCCAATTTAGTGAAAGTGATTGGATATTGTGAAGAGGAAGAGACCTTGGGTATTGTTTATGATCTAAATCCACATGATATTTTGGAGAACTTAATTACTCGAG.....................................................................................................................................................................................................................................................CTGACTTCAATTGGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306089" ref_strand="+" ref_description="SGN-E306089 [cLEY-13-F11]">
      <seq>ttgattcccatccattgtcggtgaagtccgtctctcccgtgattgccattgtttcaagaatcatgtttcgccggtgttttgctggatgcatcaatctgccttgcatacgaaagaaaggcccagttgatgaggaggaggaggaggattttcccgtgaaagatgaacttcataaactcacatcccaggacctaagtcgatttacagcccaattttctccggaaaatcttgttggagtcaccaacttaggaaagctctatcgtgggaagatggtcattgatgatattagcaaggatgtcgctgtcaagattataggtattgataaatggatatttcgatatacaggcgacgacagactggaaagattcgagtatgaattgaaatttttgcaagctccaaggattaagggcaatcccaatttagtgaaagtgattggatattgtgaagaggaagagaccttgggtattggttatgatctaaatccacatgatattttggagaacttaattactcgaggtgtgcttctatctttactcatcttttatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0092H13-pMRmp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0092H13.2" temp_strand="-" temp_description="C01HBa0092H13.2  AC233135.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0092H13 upload_account_name:manual">
        <position start="117435" stop="116004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117135" g_stop="117052" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117051" i_stop="116840" i_length="212">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116839" g_stop="116556" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="368" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116555" i_stop="116480" i_length="76">
            <donor d_prob="0.432" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116479" g_stop="116304" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="544" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0092H13.2" gen_strand="-" ref_id="SGN-E306089" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0092H13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117135" e_stop="117052"/>
          <exon e_start="116839" e_stop="116556"/>
          <exon e_start="116479" e_stop="116304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTCCCATCCATTGTCGGTGAAGTCCGTCTCTCCCGTGATTGCCATTGTTTCAAGAATCATGTTTCGCCGGTGTTTTGCTGGTGGGTATCTTCCATCTCTATGTAGTTATCTCAAATTATCTATTTGCTTTTCTAGGGTTTTCCTGTATATAGAATTACATTTCTATTTATTTTGATTGTTTGCAATTTTATTTTTATTTTGATTGTGTATGGAGGCAGAAATTCAAAAATGGGATTTTTTGATACTGAATACATAGTGTATTTGTTTCTTCTTTCTCACTTGTTTTTTCCAGGATGCATCAATCTGCCTTGCATACGAAAGAAAGGCCCAGTTGATGAGGAGGAGGAGGAGGATTTTCCCGTGAAAGATGAACTTCATAAACTCACATCCCAGGACCTAAGTCGATTTACAGCCCAATTTTCTCCGGAAAATCTTGTTGGAGTCACCAACTTAGGAAAGCTCTATCGTGGGAAGATGGTCATTGATGATATTAGCAAGGATGTCGCTGTCAAGATTATAGGTATTGATAAATGGATATTTCGATATACAGGCGACGACAGACTGGAAAGATTCGAGGTTTGTGTGTACGTGCAAGCTCATAGTCTTCCTTCCTTACCTTATCTGACTCTTTTCTTCGTTTATGCTTCCGTAGTATGAATTGAAATTTTTGCAAGCTCCAAGGATTAAGGGCAATCCCAATTTAGTGAAAGTGATTGGATATTGTGAAGAGGAAGAGACCTTGGGTATTGTTTATGATCTAAATCCACATGATATTTTGGAGAACTTAATTACTCGAGGTGTGCTTCTATCTTTACTCATCTTTTATCT</genome_strand>
        <mrna_strand>TTGATTCCCATCCATTGTCGGTGAAGTCCGTCTCTCCCGTGATTGCCATTGTTTCAAGAATCATGTTTCGCCGGTGTTTTGCTG....................................................................................................................................................................................................................GATGCATCAATCTGCCTTGCATACGAAAGAAAGGCCCAGTTGATGAGGAGGAGGAGGAGGATTTTCCCGTGAAAGATGAACTTCATAAACTCACATCCCAGGACCTAAGTCGATTTACAGCCCAATTTTCTCCGGAAAATCTTGTTGGAGTCACCAACTTAGGAAAGCTCTATCGTGGGAAGATGGTCATTGATGATATTAGCAAGGATGTCGCTGTCAAGATTATAGGTATTGATAAATGGATATTTCGATATACAGGCGACGACAGACTGGAAAGATTCGAG............................................................................TATGAATTGAAATTTTTGCAAGCTCCAAGGATTAAGGGCAATCCCAATTTAGTGAAAGTGATTGGATATTGTGAAGAGGAAGAGACCTTGGGTATTGGTTATGATCTAAATCCACATGATATTTTGGAGAACTTAATTACTCGAGGTGTGCTTCTATCTTTACTCATCTTTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>50</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2836" PGL_stop="57"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2836" e_stop="2752"/>
            <exon e_start="2180" e_stop="1901"/>
            <exon e_start="1376" e_stop="1316"/>
            <exon e_start="769" e_stop="57"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2836" e_stop="2752" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.993">
            <gDNA_intron_boundary i_start="2751" i_stop="2181" i_length="571"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2180" e_stop="1901" e_length="280"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="1900" i_stop="1377" i_length="524"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1376" e_stop="1316" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.983">
            <gDNA_intron_boundary i_start="1315" i_stop="770" i_length="546"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="769" e_stop="57" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2836" stop="2752"/>
              <exon start="2180" stop="1901"/>
              <exon start="1376" stop="1316"/>
              <exon start="769" stop="690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2819" stop="2752"/>
              <exon start="2180" stop="1901"/>
              <exon start="1376" stop="1316"/>
              <exon start="769" stop="643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2799" stop="2752"/>
              <exon start="2180" stop="1901"/>
              <exon start="1376" stop="1337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="752" stop="386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="749" stop="80"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="437" stop="57"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="294" stop="119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293853" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCGATTTACCCTAATGTCGTCTCGTCGAGAGGGTCGCGATTCCGACTCGAAACGTCACCGTTCCCGGTTCGATCAAGAACCCAG : TCCAAAGAGATCAAGGAGACAAAGTAGACAAGAAACTGAGAGACCACCTACCACACACAATTTAGATAGTGAAAACAATTCAGAACGGGATTTAAAACACCATCGCCGTCTGCAAGATGATGTGCCTCTTGATGCTCCGTCAGTGCAAGATTCGAAGTCAGAAAGAACTCCAAGGAAACCATCTGAGAATGTAGCAGTTAAAGATGATGGGATCAAAGAGTCTTCTGATCTCAATGAAGGTTCTCGCCATCGATCATCCAAACACTCTACAAATCCATCA : CACGATGAGCGTGGTAGTGCTGGGCAAGTTGATAGAAGCTTCAGGCATAAGGCAGCAACTG : AGCGAGGATGGTGGAAAGATGCGAAAGAGACATCGAACAGAGCCACAACAAATGATAAGCAGATGAATGACGAGAAGAGCAAAGTTTCAGGCAGGCAAAATGATGTTTGGCGCCATGACAGGTACTTTGAAGTAAAGGAAAATCCTAAACCACCTGTGAAGAAAAGGTCATTTAGGGAGGAAAAGATTCCAGTGGATACTGAAAAACTTGAGAAAGCTGTGACGGAGCTTGTTAAGCCTAATCCTTCTCACCCTGAAGTAGATGGCGGAAGAAAGAATGAAAGAACTGACCACATGTCACGCCATCCTAGTAGATATGAGAGACCATTTACTGGTGAGAGGTATGCAAACAGGGGTCAAACATGGAGGGGCAAATTTCCATCAAGAGACAGGTACCATGGCAATAGTGATCACAGGGGGAGAGACAGATTCAGTTCAAGGCAAGGACCTAATCCAAGTAAGGTGGTTGAAAAGTGGAAACACGATCTTTATGATGAGGCAAACAAGAATCCAACTCCGAAAAATGAAGAAGATCAAATAGCAAAAATCGAAGCACTATTGTCTTCATAGGTCTTGCAGTTAAGTGAAGTGGTAGTTCCTGTTTCTTTGTTTGTCGAAAAAGGTAAGGGGGGGTTATTACTGATGATCGAAGTATTGCTGTACAATCCTCTCAATTTTGATTTTAGGCAATGCTATTTTGTATCTGTTGTTTGG</gDNA_template>
            <first_frame> S  D  L  P  *  C  R  L  V  E  R  V  A  I  P  T  R  N  V  T  V  P  G  S  I  K  N  P   : V  Q  R  D  Q  G  D  K  V  D  K  K  L  R  D  H  L  P  H  T  I  *  I  V  K  T  I  Q  N  G  I  *  N  T  I  A  V  C  K  M  M  C  L  L  M  L  R  Q  C  K  I  R  S  Q  K  E  L  Q  G  N  H  L  R  M  *  Q  L  K  M  M  G  S  K  S  L  L  I  S  M  K  V  L  A  I  D  H  P  N  T  L  Q  I  H  H :   T  M  S  V  V  V  L  G  K  L  I  E  A  S  G  I  R  Q  Q  L  :  S  E  D  G  G  K  M  R  K  R  H  R  T  E  P  Q  Q  M  I  S  R  *  M  T  R  R  A  K  F  Q  A  G  K  M  M  F  G  A  M  T  G  T  L  K  *  R  K  I  L  N  H  L  *  R  K  G  H  L  G  R  K  R  F  Q  W  I  L  K  N  L  R  K  L  *  R  S  L  L  S  L  I  L  L  T  L  K  *  M  A  E  E  R  M  K  E  L  T  T  C  H  A  I  L  V  D  M  R  D  H  L  L  V  R  G  M  Q  T  G  V  K  H  G  G  A  N  F  H  Q  E  T  G  T  M  A  I  V  I  T  G  G  E  T  D  S  V  Q  G  K  D  L  I  Q  V  R  W  L  K  S  G  N  T  I  F  M  M  R  Q  T  R  I  Q  L  R  K  M  K  K  I  K  *  Q  K  S  K  H  Y  C  L  H  R  S  C  S  *  V  K  W  *  F  L  F  L  C  L  S  K  K  V  R  G  G  Y  Y  *  *  S  K  Y  C  C  T  I  L  S  I  L  I  L  G  N  A  I  L  Y  L  L  F   </first_frame>
            <second_frame>  P  I  Y  P  N  V  V  S  S  R  G  S  R  F  R  L  E  T  S  P  F  P  V  R  S  R  T  Q  :  S  K  E  I  K  E  T  K  *  T  R  N  *  E  T  T  Y  H  T  Q  F  R  *  *  K  Q  F  R  T  G  F  K  T  P  S  P  S  A  R  *  C  A  S  *  C  S  V  S  A  R  F  E  V  R  K  N  S  K  E  T  I  *  E  C  S  S  *  R  *  W  D  Q  R  V  F  *  S  Q  *  R  F  S  P  S  I  I  Q  T  L  Y  K  S  I   : T  R  *  A  W  *  C  W  A  S  *  *  K  L  Q  A  *  G  S  N  * :   A  R  M  V  E  R  C  E  R  D  I  E  Q  S  H  N  K  *  *  A  D  E  *  R  E  E  Q  S  F  R  Q  A  K  *  C  L  A  P  *  Q  V  L  *  S  K  G  K  S  *  T  T  C  E  E  K  V  I  *  G  G  K  D  S  S  G  Y  *  K  T  *  E  S  C  D  G  A  C  *  A  *  S  F  S  P  *  S  R  W  R  K  K  E  *  K  N  *  P  H  V  T  P  S  *  *  I  *  E  T  I  Y  W  *  E  V  C  K  Q  G  S  N  M  E  G  Q  I  S  I  K  R  Q  V  P  W  Q  *  *  S  Q  G  E  R  Q  I  Q  F  K  A  R  T  *  S  K  *  G  G  *  K  V  E  T  R  S  L  *  *  G  K  Q  E  S  N  S  E  K  *  R  R  S  N  S  K  N  R  S  T  I  V  F  I  G  L  A  V  K  *  S  G  S  S  C  F  F  V  C  R  K  R  *  G  G  V  I  T  D  D  R  S  I  A  V  Q  S  S  Q  F  *  F  *  A  M  L  F  C  I  C  C  L  </second_frame>
            <third_frame>   R  F  T  L  M  S  S  R  R  E  G  R  D  S  D  S  K  R  H  R  S  R  F  D  Q  E  P  S :   P  K  R  S  R  R  Q  S  R  Q  E  T  E  R  P  P  T  T  H  N  L  D  S  E  N  N  S  E  R  D  L  K  H  H  R  R  L  Q  D  D  V  P  L  D  A  P  S  V  Q  D  S  K  S  E  R  T  P  R  K  P  S  E  N  V  A  V  K  D  D  G  I  K  E  S  S  D  L  N  E  G  S  R  H  R  S  S  K  H  S  T  N  P  S  :  H  D  E  R  G  S  A  G  Q  V  D  R  S  F  R  H  K  A  A  T   : E  R  G  W  W  K  D  A  K  E  T  S  N  R  A  T  T  N  D  K  Q  M  N  D  E  K  S  K  V  S  G  R  Q  N  D  V  W  R  H  D  R  Y  F  E  V  K  E  N  P  K  P  P  V  K  K  R  S  F  R  E  E  K  I  P  V  D  T  E  K  L  E  K  A  V  T  E  L  V  K  P  N  P  S  H  P  E  V  D  G  G  R  K  N  E  R  T  D  H  M  S  R  H  P  S  R  Y  E  R  P  F  T  G  E  R  Y  A  N  R  G  Q  T  W  R  G  K  F  P  S  R  D  R  Y  H  G  N  S  D  H  R  G  R  D  R  F  S  S  R  Q  G  P  N  P  S  K  V  V  E  K  W  K  H  D  L  Y  D  E  A  N  K  N  P  T  P  K  N  E  E  D  Q  I  A  K  I  E  A  L  L  S  S  *  V  L  Q  L  S  E  V  V  V  P  V  S  L  F  V  E  K  G  K  G  G  L  L  L  M  I  E  V  L  L  Y  N  P  L  N  F  D  F  R  Q  C  Y  F  V  S  V  V  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0092H13.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2834" stop="2752"/>
                    <exon start="2180" stop="1901"/>
                    <exon start="1376" stop="1316"/>
                    <exon start="769" stop="201"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>990</number_coding_nucleotides>
                  <number_encoded_amino_acids>330</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFTLMSSRREGRDSDSKRHRSRFDQEPSPKRSRRQSRQETERPPTTHNLDSENNSERDLKHHRRLQDDVPLDAPSVQDSKSERTPRKPSENVAVKDDGIKESSDLNEGSRHRSSKHSTNPSHDERGSAGQVDRSFRHKAATERGWWKDAKETSNRATTNDKQMNDEKSKVSGRQNDVWRHDRYFEVKENPKPPVKKRSFREEKIPVDTEKLEKAVTELVKPNPSHPEVDGGRKNERTDHMSRHPSRYERPFTGERYANRGQTWRGKFPSRDRYHGNSDHRGRDRFSSRQGPNPSKVVEKWKHDLYDEANKNPTPKNEEDQIAKIEALLSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="5055" PGL_stop="3857"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5055" e_stop="4541"/>
            <exon e_start="4224" e_stop="3857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5055" e_stop="4541" e_length="515"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="4540" i_stop="4225" i_length="316"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="4224" e_stop="3857" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5055" stop="4541"/>
              <exon start="4224" stop="3857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCATATCCTTGCACAAAATGCCCAATTTCTATCAGAAACACCATAACTCAATTCCCTCATCCAAGAATACCAACATCTACAAAACATCCAAAATCCCTCATCTCTCGTATTTCACTCTCCAGTAGTTCATCTCAGAGTGACCAAAAAACAAGAACAAACAGTATAAATTCTGAGGATAACTTTCCGACCATGTCAGAAATCATGGAGGCATCGAGATCCCAAAATCTTGATCTTCAGCTGAAAACATTAGGGCCCTTTTTCAGAATCACAGCGAAGAGCATAAAAACCCAAAGAGACCTTGGAAAAGCTGAGGGTTTGATAAGGGTTTGGTTTCAAGGTAAAATTCTACATTTAGACTCAATCAGACTTCAGAGAGAGACTCTGGGGATGGAAAAATCAATATTTGGGATTGGATTGTTTATTGGAGCAGTCGCAATTAGGCATGGTTATGACTCTGGTTGTAAAAAAGCTGAATTGCTCGCCATTTATGATACTGAGCTTTACCACACCAAG : CTTGTGAAATTCTACACAAGGATTGGCTTCAAGACAGTTCACCAAGTTAGTGGTGAATCACTTGGAGATGTTGGTCACATGTTAGTCTGGGGAGGCGTAGGAACTCGAATGGATGCAGACATTGAACATCTTCTTGTAAAGTGGTGCACCAGATTTAAACCAAAGAGTTGATTTTACTTCAATCCTTCAACGACCTCGACTTTAACTCTGTTGTTTGGCTACGTACACTAAATATACTTTAAGTATATGTTTGATATCATATATGGACTGATTATTATTTTTTTTCCCTTCCTACTCTCCTTAGTTAATGAACCAAAATGGTGTTTGAATTTTATTTTGGAAATAGTTTTTGAAATAATTAATTTCGA</gDNA_template>
            <first_frame> V  H  I  L  A  Q  N  A  Q  F  L  S  E  T  P  *  L  N  S  L  I  Q  E  Y  Q  H  L  Q  N  I  Q  N  P  S  S  L  V  F  H  S  P  V  V  H  L  R  V  T  K  K  Q  E  Q  T  V  *  I  L  R  I  T  F  R  P  C  Q  K  S  W  R  H  R  D  P  K  I  L  I  F  S  *  K  H  *  G  P  F  S  E  S  Q  R  R  A  *  K  P  K  E  T  L  E  K  L  R  V  *  *  G  F  G  F  K  V  K  F  Y  I  *  T  Q  S  D  F  R  E  R  L  W  G  W  K  N  Q  Y  L  G  L  D  C  L  L  E  Q  S  Q  L  G  M  V  M  T  L  V  V  K  K  L  N  C  S  P  F  M  I  L  S  F  T  T  P  S :   L  *  N  S  T  Q  G  L  A  S  R  Q  F  T  K  L  V  V  N  H  L  E  M  L  V  T  C  *  S  G  E  A  *  E  L  E  W  M  Q  T  L  N  I  F  L  *  S  G  A  P  D  L  N  Q  R  V  D  F  T  S  I  L  Q  R  P  R  L  *  L  C  C  L  A  T  Y  T  K  Y  T  L  S  I  C  L  I  S  Y  M  D  *  L  L  F  F  F  P  S  Y  S  P  *  L  M  N  Q  N  G  V  *  I  L  F  W  K  *  F  L  K  *  L  I  S  </first_frame>
            <second_frame>  F  I  S  L  H  K  M  P  N  F  Y  Q  K  H  H  N  S  I  P  S  S  K  N  T  N  I  Y  K  T  S  K  I  P  H  L  S  Y  F  T  L  Q  *  F  I  S  E  *  P  K  N  K  N  K  Q  Y  K  F  *  G  *  L  S  D  H  V  R  N  H  G  G  I  E  I  P  K  S  *  S  S  A  E  N  I  R  A  L  F  Q  N  H  S  E  E  H  K  N  P  K  R  P  W  K  S  *  G  F  D  K  G  L  V  S  R  *  N  S  T  F  R  L  N  Q  T  S  E  R  D  S  G  D  G  K  I  N  I  W  D  W  I  V  Y  W  S  S  R  N  *  A  W  L  *  L  W  L  *  K  S  *  I  A  R  H  L  *  Y  *  A  L  P  H  Q   : A  C  E  I  L  H  K  D  W  L  Q  D  S  S  P  S  *  W  *  I  T  W  R  C  W  S  H  V  S  L  G  R  R  R  N  S  N  G  C  R  H  *  T  S  S  C  K  V  V  H  Q  I  *  T  K  E  L  I  L  L  Q  S  F  N  D  L  D  F  N  S  V  V  W  L  R  T  L  N  I  L  *  V  Y  V  *  Y  H  I  W  T  D  Y  Y  F  F  S  L  P  T  L  L  S  *  *  T  K  M  V  F  E  F  Y  F  G  N  S  F  *  N  N  *  F  R </second_frame>
            <third_frame>   S  Y  P  C  T  K  C  P  I  S  I  R  N  T  I  T  Q  F  P  H  P  R  I  P  T  S  T  K  H  P  K  S  L  I  S  R  I  S  L  S  S  S  S  S  Q  S  D  Q  K  T  R  T  N  S  I  N  S  E  D  N  F  P  T  M  S  E  I  M  E  A  S  R  S  Q  N  L  D  L  Q  L  K  T  L  G  P  F  F  R  I  T  A  K  S  I  K  T  Q  R  D  L  G  K  A  E  G  L  I  R  V  W  F  Q  G  K  I  L  H  L  D  S  I  R  L  Q  R  E  T  L  G  M  E  K  S  I  F  G  I  G  L  F  I  G  A  V  A  I  R  H  G  Y  D  S  G  C  K  K  A  E  L  L  A  I  Y  D  T  E  L  Y  H  T  K  :  L  V  K  F  Y  T  R  I  G  F  K  T  V  H  Q  V  S  G  E  S  L  G  D  V  G  H  M  L  V  W  G  G  V  G  T  R  M  D  A  D  I  E  H  L  L  V  K  W  C  T  R  F  K  P  K  S  *  F  Y  F  N  P  S  T  T  S  T  L  T  L  L  F  G  Y  V  H  *  I  Y  F  K  Y  M  F  D  I  I  Y  G  L  I  I  I  F  F  P  F  L  L  S  L  V  N  E  P  K  W  C  L  N  F  I  L  E  I  V  F  E  I  I  N  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0092H13.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5053" stop="4541"/>
                    <exon start="4224" stop="4054"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYPCTKCPISIRNTITQFPHPRIPTSTKHPKSLISRISLSSSSSQSDQKTRTNSINSEDNFPTMSEIMEASRSQNLDLQLKTLGPFFRITAKSIKTQRDLGKAEGLIRVWFQGKILHLDSIRLQRETLGMEKSIFGIGLFIGAVAIRHGYDSGCKKAELLAIYDTELYHTKLVKFYTRIGFKTVHQVSGESLGDVGHMLVWGGVGTRMDADIEHLLVKWCTRFKPKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="6455" PGL_stop="5534"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6455" e_stop="6363"/>
            <exon e_start="6258" e_stop="5948"/>
            <exon e_start="5836" e_stop="5534"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6455" e_stop="6363" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6362" i_stop="6259" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6258" e_stop="5948" e_length="311"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.993">
            <gDNA_intron_boundary i_start="5947" i_stop="5837" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="5836" e_stop="5534" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6455" stop="6363"/>
              <exon start="6258" stop="5948"/>
              <exon start="5836" stop="5534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6454" stop="6363"/>
              <exon start="6258" stop="5948"/>
              <exon start="5836" stop="5746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236352" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGATTCTACTTACAGTTGCCATGCAATAGGGAACATTAATGAAGAATTGAATGAAACTCTTGTACCTCAAAGTAGTGAACCTCAACCTAAG : GTTCATGAACCAACCGATACTGATCATACAATAGAGTCTGATAAGGTCGATTCTTATGTGAGACAATTGGAGGCAAGCAGCTGTGATAGATGGGAAGTTGGTGTTAACTGCGCGAATGATGAAGCAGGGTCTGCATCAAATCAGAAGCAATTATTTCTTTGGGTGGACGACTACAAATGCTCTATTTGTGGTATTGAACTGCCTCCTAGTTTCATTGAAGAAAGGCAAGAACATTCTGATTTTCATCTTGCTGAAAAGTTGCAAGGTGAAGAATCAGGTAACCACCACAGAAGTTTTATGCCACAACAGAG : GGCTGCTCAGAGAGGCCATACTGGAAGCAGCAGTCGGCAGAAAAAGAAACAGAAACCCTCTCCAACTGCTAGCAAATATGTACCAATTGATGCATTCTTTGTTAAAACGAACCAGAATTTTTGAAAGGCATAACATAGTGAAACTCTATTTATTCAGAAGATAATAATAAAATTTTCTTTTTCCATGTACAACACAACATATCCAGTGTGGGGAGGATGCGGTCTATTTCTTTATCCATGTATTCTTTGTATATAACTGTATAATTGTATATAGTAAAACGCTGCAACCAGTGTTATGGTTAA</gDNA_template>
            <first_frame> S  D  S  T  Y  S  C  H  A  I  G  N  I  N  E  E  L  N  E  T  L  V  P  Q  S  S  E  P  Q  P  K  :  V  H  E  P  T  D  T  D  H  T  I  E  S  D  K  V  D  S  Y  V  R  Q  L  E  A  S  S  C  D  R  W  E  V  G  V  N  C  A  N  D  E  A  G  S  A  S  N  Q  K  Q  L  F  L  W  V  D  D  Y  K  C  S  I  C  G  I  E  L  P  P  S  F  I  E  E  R  Q  E  H  S  D  F  H  L  A  E  K  L  Q  G  E  E  S  G  N  H  H  R  S  F  M  P  Q  Q  R :   A  A  Q  R  G  H  T  G  S  S  S  R  Q  K  K  K  Q  K  P  S  P  T  A  S  K  Y  V  P  I  D  A  F  F  V  K  T  N  Q  N  F  *  K  A  *  H  S  E  T  L  F  I  Q  K  I  I  I  K  F  S  F  S  M  Y  N  T  T  Y  P  V  W  G  G  C  G  L  F  L  Y  P  C  I  L  C  I  *  L  Y  N  C  I  *  *  N  A  A  T  S  V  M  V   </first_frame>
            <second_frame>  Q  I  L  L  T  V  A  M  Q  *  G  T  L  M  K  N  *  M  K  L  L  Y  L  K  V  V  N  L  N  L  R :   F  M  N  Q  P  I  L  I  I  Q  *  S  L  I  R  S  I  L  M  *  D  N  W  R  Q  A  A  V  I  D  G  K  L  V  L  T  A  R  M  M  K  Q  G  L  H  Q  I  R  S  N  Y  F  F  G  W  T  T  T  N  A  L  F  V  V  L  N  C  L  L  V  S  L  K  K  G  K  N  I  L  I  F  I  L  L  K  S  C  K  V  K  N  Q  V  T  T  T  E  V  L  C  H  N  R   : G  L  L  R  E  A  I  L  E  A  A  V  G  R  K  R  N  R  N  P  L  Q  L  L  A  N  M  Y  Q  L  M  H  S  L  L  K  R  T  R  I  F  E  R  H  N  I  V  K  L  Y  L  F  R  R  *  *  *  N  F  L  F  P  C  T  T  Q  H  I  Q  C  G  E  D  A  V  Y  F  F  I  H  V  F  F  V  Y  N  C  I  I  V  Y  S  K  T  L  Q  P  V  L  W  L  </second_frame>
            <third_frame>   R  F  Y  L  Q  L  P  C  N  R  E  H  *  *  R  I  E  *  N  S  C  T  S  K  *  *  T  S  T  *   : G  S  *  T  N  R  Y  *  S  Y  N  R  V  *  *  G  R  F  L  C  E  T  I  G  G  K  Q  L  *  *  M  G  S  W  C  *  L  R  E  *  *  S  R  V  C  I  K  S  E  A  I  I  S  L  G  G  R  L  Q  M  L  Y  L  W  Y  *  T  A  S  *  F  H  *  R  K  A  R  T  F  *  F  S  S  C  *  K  V  A  R  *  R  I  R  *  P  P  Q  K  F  Y  A  T  T  E  :  G  C  S  E  R  P  Y  W  K  Q  Q  S  A  E  K  E  T  E  T  L  S  N  C  *  Q  I  C  T  N  *  C  I  L  C  *  N  E  P  E  F  L  K  G  I  T  *  *  N  S  I  Y  S  E  D  N  N  K  I  F  F  F  H  V  Q  H  N  I  S  S  V  G  R  M  R  S  I  S  L  S  M  Y  S  L  Y  I  T  V  *  L  Y  I  V  K  R  C  N  Q  C  Y  G  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0092H13.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6455" stop="6363"/>
                    <exon start="6258" stop="5948"/>
                    <exon start="5836" stop="5713"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDSTYSCHAIGNINEELNETLVPQSSEPQPKVHEPTDTDHTIESDKVDSYVRQLEASSCDRWEVGVNCANDEAGSASNQKQLFLWVDDYKCSICGIELPPSFIEERQEHSDFHLAEKLQGEESGNHHRSFMPQQRAAQRGHTGSSSRQKKKQKPSPTASKYVPIDAFFVKTNQNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="8552" PGL_stop="6558"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8552" e_stop="8508"/>
            <exon e_start="8284" e_stop="8156"/>
            <exon e_start="7983" e_stop="7892"/>
            <exon e_start="7802" e_stop="7691"/>
            <exon e_start="6691" e_stop="6558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.457" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.746" acc_prob="0.876" e_score="0.992"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.878" acc_prob="0.631" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8552" e_stop="8508" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.457" acc_prob="0.996">
            <gDNA_intron_boundary i_start="8507" i_stop="8285" i_length="223"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="8284" e_stop="8156" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.746" acc_prob="0.876">
            <gDNA_intron_boundary i_start="8155" i_stop="7984" i_length="172"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7983" e_stop="7892" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="7891" i_stop="7803" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7802" e_stop="7691" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.878" acc_prob="0.631">
            <gDNA_intron_boundary i_start="7690" i_stop="6692" i_length="999"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="6691" e_stop="6558" e_length="134"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8552" stop="8508"/>
              <exon start="8284" stop="8156"/>
              <exon start="7983" stop="7892"/>
              <exon start="7802" stop="7691"/>
              <exon start="6691" stop="6558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275296" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGAGTAGTTCCCTTTGTGGCCTGTTTTCTCGTTCTTCAGCAG : ACTTTTTCCTTTCCGTAGGTCTAGGGCTTGGTGGAACCGATACTCCTCAATATAGGATGAGAAAGAGTATAAGTAACGAAAGAACATTTTCAGCCACTAGCGACGAAGCTTTGCTTTTTCAAAAATTAG : TTGATCTATCAGAAATGCTTTCTGCTGATATGATAAAGGAAGGTCTTTTTGGGCGAACATTGACACTAAAACTGAAGACCGCATCCTTTGAG : ATTCGATCTCGAGCGGTGACTTTGCCAAGTTACATAAGTTCCAGTGAGGAAATCTTGAAACATGCTTCAAAGCTGCTTAAGGCCGAATTTCCTGTTTCTTTGAGGCTCATGG : GTCTTCGAATGTCTCATTTCAGTGAAGACAAGAACGGGATTCCACCTGATCCTACACAAAAAACTCTTTCTAGTTTCATTTTTTCTGGAGATGCTTCTGGAGGAAAGACAAGTGATTACAGGCCCTTGGTCTCT</gDNA_template>
            <first_frame> K  R  V  V  P  F  V  A  C  F  L  V  L  Q  Q  :  T  F  S  F  P  *  V  *  G  L  V  E  P  I  L  L  N  I  G  *  E  R  V  *  V  T  K  E  H  F  Q  P  L  A  T  K  L  C  F  F  K  N  *  :  L  I  Y  Q  K  C  F  L  L  I  *  *  R  K  V  F  L  G  E  H  *  H  *  N  *  R  P  H  P  L  R :   F  D  L  E  R  *  L  C  Q  V  T  *  V  P  V  R  K  S  *  N  M  L  Q  S  C  L  R  P  N  F  L  F  L  *  G  S  W  :  V  F  E  C  L  I  S  V  K  T  R  T  G  F  H  L  I  L  H  K  K  L  F  L  V  S  F  F  L  E  M  L  L  E  E  R  Q  V  I  T  G  P  W  S   </first_frame>
            <second_frame>  K  E  *  F  P  L  W  P  V  F  S  F  F  S  R :   L  F  P  F  R  R  S  R  A  W  W  N  R  Y  S  S  I  *  D  E  K  E  Y  K  *  R  K  N  I  F  S  H  *  R  R  S  F  A  F  S  K  I  S :   *  S  I  R  N  A  F  C  *  Y  D  K  G  R  S  F  W  A  N  I  D  T  K  T  E  D  R  I  L  *   : D  S  I  S  S  G  D  F  A  K  L  H  K  F  Q  *  G  N  L  E  T  C  F  K  A  A  *  G  R  I  S  C  F  F  E  A  H  G :   S  S  N  V  S  F  Q  *  R  Q  E  R  D  S  T  *  S  Y  T  K  N  S  F  *  F  H  F  F  W  R  C  F  W  R  K  D  K  *  L  Q  A  L  G  L  </second_frame>
            <third_frame>   K  S  S  S  L  C  G  L  F  S  R  S  S  A   : D  F  F  L  S  V  G  L  G  L  G  G  T  D  T  P  Q  Y  R  M  R  K  S  I  S  N  E  R  T  F  S  A  T  S  D  E  A  L  L  F  Q  K  L   : V  D  L  S  E  M  L  S  A  D  M  I  K  E  G  L  F  G  R  T  L  T  L  K  L  K  T  A  S  F  E  :  I  R  S  R  A  V  T  L  P  S  Y  I  S  S  S  E  E  I  L  K  H  A  S  K  L  L  K  A  E  F  P  V  S  L  R  L  M   : G  L  R  M  S  H  F  S  E  D  K  N  G  I  P  P  D  P  T  Q  K  T  L  S  S  F  I  F  S  G  D  A  S  G  G  K  T  S  D  Y  R  P  L  V  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0092H13.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8550" stop="8508"/>
                    <exon start="8284" stop="8156"/>
                    <exon start="7983" stop="7892"/>
                    <exon start="7802" stop="7691"/>
                    <exon start="6691" stop="6558"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSSSLCGLFSRSSADFFLSVGLGLGGTDTPQYRMRKSISNERTFSATSDEALLFQKLVDLSEMLSADMIKEGLFGRTLTLKLKTASFEIRSRAVTLPSYISSSEEILKHASKLLKAEFPVSLRLMGLRMSHFSEDKNGIPPDPTQKTLSSFIFSGDASGGKTSDYRPLVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="41128" PGL_stop="53243"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41128" e_stop="41311"/>
            <exon e_start="45370" e_stop="45457"/>
            <exon e_start="46076" e_stop="46139"/>
            <exon e_start="48666" e_stop="48730"/>
            <exon e_start="51698" e_stop="51754"/>
            <exon e_start="53116" e_stop="53243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.887" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.140" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.870" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.551" e_score="1.000"/>
          <exon-intron don_prob="0.802" acc_prob="0.995" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41128" e_stop="41311" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.887">
            <gDNA_intron_boundary i_start="41312" i_stop="45369" i_length="4058"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45370" e_stop="45457" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.140">
            <gDNA_intron_boundary i_start="45458" i_stop="46075" i_length="618"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46076" e_stop="46139" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.870">
            <gDNA_intron_boundary i_start="46140" i_stop="48665" i_length="2526"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48666" e_stop="48730" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.551">
            <gDNA_intron_boundary i_start="48731" i_stop="51697" i_length="2967"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="51698" e_stop="51754" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.802" acc_prob="0.995">
            <gDNA_intron_boundary i_start="51755" i_stop="53115" i_length="1361"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53116" e_stop="53243" e_length="128"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41128" stop="41311"/>
              <exon start="45370" stop="45457"/>
              <exon start="46076" stop="46139"/>
              <exon start="48666" stop="48730"/>
              <exon start="51698" stop="51754"/>
              <exon start="53116" stop="53243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41128" stop="41311"/>
              <exon start="45370" stop="45457"/>
              <exon start="46076" stop="46139"/>
              <exon start="48666" stop="48730"/>
              <exon start="51698" stop="51754"/>
              <exon start="53116" stop="53210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGATAATATCTCCCACAGAGCGGAAAAAAAGAGAGAAGAAAATCAGAAATGCGCGCGCAAAACGGCAAGAATAAAAATATAATAATTTAAAGAGTTGTAATTTTATACTAAAAATTCTCTGCTTATTGCTGAGAACATTCTCCGACTCCGAGGTCCCATAGGGTTGTGATTATTCACTTCAG : GTATCCCCGGAAAGTTTGACTCTGAATTTTGGAGTTTCAGATCTTATTAGTAAACTGAACGTGCGAGCCCAACTCTGTACTATTGCAG : GGATTTCTTGGTTGTTCTATGTTGAATTTTGGAGTTCCGATCGGCTTACTTGTAAACTAGAGAG : GGATCTTTTGGGTGTAAGATGCTGAACCTTGGAGTTTTAGATCTGCTTTTTTGTAAACTGAACAG : GGATCTTTTGGAAGTTAGATATTGAATGTTGGAGTTTCAGATCTGTAAACTGAACAG : CTCATGTTATGCGATTTTGGGTGCAAAGCAACATGGTACAATGAAGTTCATGCTTTTTTGTTTCACTCAAGTGAAATGAAAATGGCTCATGAACTGTGGATATCCGTTTCATTTCTTATTTTGACTTG</gDNA_template>
            <first_frame> K  D  N  I  S  H  R  A  E  K  K  R  E  E  N  Q  K  C  A  R  K  T  A  R  I  K  I  *  *  F  K  E  L  *  F  Y  T  K  N  S  L  L  I  A  E  N  I  L  R  L  R  G  P  I  G  L  *  L  F  T  S   : G  I  P  G  K  F  D  S  E  F  W  S  F  R  S  Y  *  *  T  E  R  A  S  P  T  L  Y  Y  C  R :   D  F  L  V  V  L  C  *  I  L  E  F  R  S  A  Y  L  *  T  R  E  :  G  S  F  G  C  K  M  L  N  L  G  V  L  D  L  L  F  C  K  L  N  R :   D  L  L  E  V  R  Y  *  M  L  E  F  Q  I  C  K  L  N  S :   S  C  Y  A  I  L  G  A  K  Q  H  G  T  M  K  F  M  L  F  C  F  T  Q  V  K  *  K  W  L  M  N  C  G  Y  P  F  H  F  L  F  *  L  </first_frame>
            <second_frame>  K  I  I  S  P  T  E  R  K  K  R  E  K  K  I  R  N  A  R  A  K  R  Q  E  *  K  Y  N  N  L  K  S  C  N  F  I  L  K  I  L  C  L  L  L  R  T  F  S  D  S  E  V  P  *  G  C  D  Y  S  L  Q  :  V  S  P  E  S  L  T  L  N  F  G  V  S  D  L  I  S  K  L  N  V  R  A  Q  L  C  T  I  A   : G  I  S  W  L  F  Y  V  E  F  W  S  S  D  R  L  T  C  K  L  E  R :   D  L  L  G  V  R  C  *  T  L  E  F  *  I  C  F  F  V  N  *  T   : G  I  F  W  K  L  D  I  E  C  W  S  F  R  S  V  N  *  T   : A  H  V  M  R  F  W  V  Q  S  N  M  V  Q  *  S  S  C  F  F  V  S  L  K  *  N  E  N  G  S  *  T  V  D  I  R  F  I  S  Y  F  D  L </second_frame>
            <third_frame>   R  *  Y  L  P  Q  S  G  K  K  E  R  R  K  S  E  M  R  A  Q  N  G  K  N  K  N  I  I  I  *  R  V  V  I  L  Y  *  K  F  S  A  Y  C  *  E  H  S  P  T  P  R  S  H  R  V  V  I  I  H  F  R :   Y  P  R  K  V  *  L  *  I  L  E  F  Q  I  L  L  V  N  *  T  C  E  P  N  S  V  L  L  Q  :  G  F  L  G  C  S  M  L  N  F  G  V  P  I  G  L  L  V  N  *  R   : G  I  F  W  V  *  D  A  E  P  W  S  F  R  S  A  F  L  *  T  E  Q  :  G  S  F  G  S  *  I  L  N  V  G  V  S  D  L  *  T  E  Q  :  L  M  L  C  D  F  G  C  K  A  T  W  Y  N  E  V  H  A  F  L  F  H  S  S  E  M  K  M  A  H  E  L  W  I  S  V  S  F  L  I  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0092H13.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41291" stop="41311"/>
                    <exon start="45370" stop="45457"/>
                    <exon start="46076" stop="46139"/>
                    <exon start="48666" stop="48690"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCDYSLQVSPESLTLNFGVSDLISKLNVRAQLCTIAGISWLFYVEFWSSDRLTCKLERDLLGVRC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="50874" e_stop="51369"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50874" e_stop="51369" e_length="496"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50874" stop="51369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347091" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCTTAAAATAATATGCCTCTGCAGTTCCTCTGATTACTCCTGTTGATGCCTAAAGATGTTATCAGCTTTGGTTGCTTCTATCACTTGTATATTCACAATCCTATGCAATCATACTCAACCCTTTGGTCATCTGGAAACCAAAACCCGTGAGATCTGTGTAGTGATTAAGAACAGTCATTGGACATGAGGCCAGGTCTCCAGTGTTACCTGAATTAAAATTTCATGCTTGAGCTTCATCGTTCAAGTTACAGCTAAAGAAAATAAAATATCCTCCAAGGAGTATCTAGTTGATAGTTAACCATGGGTTTAAAGTTACCAGTTTCAAAAAGAATAGTTAACCATGGGTCTTTTTCTGGGTTCTCTTACTTCCAGTTCTCTTTTGAATACCTTCTTTATAAGCTATATTAGTATTACTTGTTTCGTGGAATGGTGCAGCTCATGTTATGCGATTTTGGGTGCAAATAATGAAGTTCATGCTTCTTTGTTTCACTAAA</gDNA_template>
            <first_frame> L  L  K  I  I  C  L  C  S  S  S  D  Y  S  C  *  C  L  K  M  L  S  A  L  V  A  S  I  T  C  I  F  T  I  L  C  N  H  T  Q  P  F  G  H  L  E  T  K  T  R  E  I  C  V  V  I  K  N  S  H  W  T  *  G  Q  V  S  S  V  T  *  I  K  I  S  C  L  S  F  I  V  Q  V  T  A  K  E  N  K  I  S  S  K  E  Y  L  V  D  S  *  P  W  V  *  S  Y  Q  F  Q  K  E  *  L  T  M  G  L  F  L  G  S  L  T  S  S  S  L  L  N  T  F  F  I  S  Y  I  S  I  T  C  F  V  E  W  C  S  S  C  Y  A  I  L  G  A  N  N  E  V  H  A  S  L  F  H  *  </first_frame>
            <second_frame>  C  L  K  *  Y  A  S  A  V  P  L  I  T  P  V  D  A  *  R  C  Y  Q  L  W  L  L  L  S  L  V  Y  S  Q  S  Y  A  I  I  L  N  P  L  V  I  W  K  P  K  P  V  R  S  V  *  *  L  R  T  V  I  G  H  E  A  R  S  P  V  L  P  E  L  K  F  H  A  *  A  S  S  F  K  L  Q  L  K  K  I  K  Y  P  P  R  S  I  *  L  I  V  N  H  G  F  K  V  T  S  F  K  K  N  S  *  P  W  V  F  F  W  V  L  L  L  P  V  L  F  *  I  P  S  L  *  A  I  L  V  L  L  V  S  W  N  G  A  A  H  V  M  R  F  W  V  Q  I  M  K  F  M  L  L  C  F  T  K </second_frame>
            <third_frame>   A  *  N  N  M  P  L  Q  F  L  *  L  L  L  L  M  P  K  D  V  I  S  F  G  C  F  Y  H  L  Y  I  H  N  P  M  Q  S  Y  S  T  L  W  S  S  G  N  Q  N  P  *  D  L  C  S  D  *  E  Q  S  L  D  M  R  P  G  L  Q  C  Y  L  N  *  N  F  M  L  E  L  H  R  S  S  Y  S  *  R  K  *  N  I  L  Q  G  V  S  S  *  *  L  T  M  G  L  K  L  P  V  S  K  R  I  V  N  H  G  S  F  S  G  F  S  Y  F  Q  F  S  F  E  Y  L  L  Y  K  L  Y  *  Y  Y  L  F  R  G  M  V  Q  L  M  L  C  D  F  G  C  K  *  *  S  S  C  F  F  V  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0092H13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="67803" PGL_stop="63944"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67803" e_stop="67737"/>
            <exon e_start="67547" e_stop="67485"/>
            <exon e_start="66627" e_stop="66534"/>
            <exon e_start="66369" e_stop="66261"/>
            <exon e_start="66169" e_stop="66131"/>
            <exon e_start="65813" e_stop="65730"/>
            <exon e_start="65390" e_stop="65329"/>
            <exon e_start="64363" e_stop="64261"/>
            <exon e_start="64045" e_stop="63944"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="0.940"/>
          <exon-intron don_prob="0.998" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.879" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.920" e_score="0.982"/>
          <exon-intron don_prob="0.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.998" e_score="0.981"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="67803" e_stop="67737" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67736" i_stop="67548" i_length="189"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67547" e_stop="67485" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.967">
            <gDNA_intron_boundary i_start="67484" i_stop="66628" i_length="857"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66627" e_stop="66534" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.879" acc_prob="0.962">
            <gDNA_intron_boundary i_start="66533" i_stop="66370" i_length="164"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="66369" e_stop="66261" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.920">
            <gDNA_intron_boundary i_start="66260" i_stop="66170" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="66169" e_stop="66131" e_length="39"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="66130" i_stop="65814" i_length="317"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="65813" e_stop="65730" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65729" i_stop="65391" i_length="339"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65390" e_stop="65329" e_length="62"/>
          </exon>
          <intron i_serial="7" don_prob="0.943" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65328" i_stop="64364" i_length="965"/>
          </intron>
          <exon e_serial="8" e_score="0.981">
            <gDNA_exon_boundary e_start="64363" e_stop="64261" e_length="103"/>
          </exon>
          <intron i_serial="8" don_prob="0.894" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64260" i_stop="64046" i_length="215"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="64045" e_stop="63944" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67803" stop="67737"/>
              <exon start="67547" stop="67485"/>
              <exon start="66627" stop="66534"/>
              <exon start="66369" stop="66261"/>
              <exon start="66169" stop="66131"/>
              <exon start="65813" stop="65730"/>
              <exon start="65390" stop="65329"/>
              <exon start="64363" stop="64261"/>
              <exon start="64045" stop="63944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722451" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGGGAAAAAAAATTAAGAATCAGTTGTTGGGTTTCTAGGGTTCTCATTCGAATTGGAGCCTTCAAG : CCATGGATGGAAATTTGAACGATAATGCATCTTTGCGTGCTCGGATCAAAGAGTTGGAACGCG : AGCGTGATGAATTGCATAAAGATATTGAACAGCTATGCATGCAACAAAGTGGACCTAGCTATATTGGGCTGCCTACTCATGTGCCTCTTCATAG : GATAGCTGGGTTGGAGCAGGAGACTGAAAACTTGAAAAAGAAACTAGCTGCTTGCACAAGAGAAAATCAGAATCTTCAAGAAGAGCTTTCAGAAGCTTATCACATCAAA : GGTCAACTGGCTAGTCTACACAGTGCAGAAGTTTCCAAG : AATATTGAAGCAGAAAAGCAGCTCAAGTTTTTTCAAGGCTGTGTTGCTGCTGCATTTTCTGAGCGGGACCATGCTGTAATGGAG : GCTGAAAAGGCTAAGGAAAAGGAGGAGCTTATTTCAAGAGGATTTCATGAACTTCAGCAGAG : GATTGAAGAGCTGCACTGTGAATTACTTGAAGAGAAAATATTGACGGCTACTTTGCAGAGTGAGATGGACGGGGAAGAGAGGTTGGATGAGGCTTTCAAGGAG : GTTGTTCACAAGTTCTATGAGATCAGACAGCAGTCACTGGAGGATATTGAAGAAGATGTGTCCTGGGAAGACAAATGTGGGTGCCTCCTGCATGATTTGTCT</gDNA_template>
            <first_frame> E  G  K  K  I  K  N  Q  L  L  G  F  *  G  S  H  S  N  W  S  L  Q   : A  M  D  G  N  L  N  D  N  A  S  L  R  A  R  I  K  E  L  E  R   : E  R  D  E  L  H  K  D  I  E  Q  L  C  M  Q  Q  S  G  P  S  Y  I  G  L  P  T  H  V  P  L  H  R :   I  A  G  L  E  Q  E  T  E  N  L  K  K  K  L  A  A  C  T  R  E  N  Q  N  L  Q  E  E  L  S  E  A  Y  H  I  K  :  G  Q  L  A  S  L  H  S  A  E  V  S  K  :  N  I  E  A  E  K  Q  L  K  F  F  Q  G  C  V  A  A  A  F  S  E  R  D  H  A  V  M  E  :  A  E  K  A  K  E  K  E  E  L  I  S  R  G  F  H  E  L  Q  Q  R :   I  E  E  L  H  C  E  L  L  E  E  K  I  L  T  A  T  L  Q  S  E  M  D  G  E  E  R  L  D  E  A  F  K  E  :  V  V  H  K  F  Y  E  I  R  Q  Q  S  L  E  D  I  E  E  D  V  S  W  E  D  K  C  G  C  L  L  H  D  L  S </first_frame>
            <second_frame>  R  E  K  K  L  R  I  S  C  W  V  S  R  V  L  I  R  I  G  A  F  K  :  P  W  M  E  I  *  T  I  M  H  L  C  V  L  G  S  K  S  W  N  A  :  S  V  M  N  C  I  K  I  L  N  S  Y  A  C  N  K  V  D  L  A  I  L  G  C  L  L  M  C  L  F  I   : G  *  L  G  W  S  R  R  L  K  T  *  K  R  N  *  L  L  A  Q  E  K  I  R  I  F  K  K  S  F  Q  K  L  I  T  S  K :   V  N  W  L  V  Y  T  V  Q  K  F  P  R :   I  L  K  Q  K  S  S  S  S  F  F  K  A  V  L  L  L  H  F  L  S  G  T  M  L  *  W  R :   L  K  R  L  R  K  R  R  S  L  F  Q  E  D  F  M  N  F  S  R   : G  L  K  S  C  T  V  N  Y  L  K  R  K  Y  *  R  L  L  C  R  V  R  W  T  G  K  R  G  W  M  R  L  S  R  R :   L  F  T  S  S  M  R  S  D  S  S  H  W  R  I  L  K  K  M  C  P  G  K  T  N  V  G  A  S  C  M  I  C   </second_frame>
            <third_frame>   G  K  K  N  *  E  S  V  V  G  F  L  G  F  S  F  E  L  E  P  S  S :   H  G  W  K  F  E  R  *  C  I  F  A  C  S  D  Q  R  V  G  T  R :   A  *  *  I  A  *  R  Y  *  T  A  M  H  A  T  K  W  T  *  L  Y  W  A  A  Y  S  C  A  S  S  *  :  D  S  W  V  G  A  G  D  *  K  L  E  K  E  T  S  C  L  H  K  R  K  S  E  S  S  R  R  A  F  R  S  L  S  H  Q   : R  S  T  G  *  S  T  Q  C  R  S  F  Q   : E  Y  *  S  R  K  A  A  Q  V  F  S  R  L  C  C  C  C  I  F  *  A  G  P  C  C  N  G   : G  *  K  G  *  G  K  G  G  A  Y  F  K  R  I  S  *  T  S  A  E  :  D  *  R  A  A  L  *  I  T  *  R  E  N  I  D  G  Y  F  A  E  *  D  G  R  G  R  E  V  G  *  G  F  Q  G   : G  C  S  Q  V  L  *  D  Q  T  A  V  T  G  G  Y  *  R  R  C  V  L  G  R  Q  M  W  V  P  P  A  *  F  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0092H13.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67764" stop="67737"/>
                    <exon start="67547" stop="67485"/>
                    <exon start="66627" stop="66534"/>
                    <exon start="66369" stop="66261"/>
                    <exon start="66169" stop="66131"/>
                    <exon start="65813" stop="65730"/>
                    <exon start="65390" stop="65329"/>
                    <exon start="64363" stop="64261"/>
                    <exon start="64045" stop="63944"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSHSNWSLQAMDGNLNDNASLRARIKELERERDELHKDIEQLCMQQSGPSYIGLPTHVPLHRIAGLEQETENLKKKLAACTRENQNLQEELSEAYHIKGQLASLHSAEVSKNIEAEKQLKFFQGCVAAAFSERDHAVMEAEKAKEKEELISRGFHELQQRIEELHCELLEEKILTATLQSEMDGEERLDEAFKEVVHKFYEIRQQSLEDIEEDVSWEDKCGCLLHDLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="65392" e_stop="65329"/>
            <exon e_start="64363" e_stop="64261"/>
            <exon e_start="64045" e_stop="63978"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65392" e_stop="65329" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65328" i_stop="64364" i_length="965"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64363" e_stop="64261" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.894" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64260" i_stop="64046" i_length="215"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64045" e_stop="63978" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65392" stop="65329"/>
              <exon start="64363" stop="64261"/>
              <exon start="64045" stop="63978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240018" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGCTGAAAAGGCTAAGGAAAAGGAGGAGCTTATTTCAAGAGGATTTCATGAACTTCAGCAGAG : GATTGAAGAGCTGCACTGTGAATTACTTGAAGAGAAAATATTGACGGCTACTTTGCAGAGTGAGATGGACGGGGAAGAGAGGTTGGATGAGGCTTTCAAGGAG : GTTGTTCACAAGTTCTATGAGATCAGACAGCAGTCACTGGAGGATATTGAAGAAGATGTGTCCTGGGA</gDNA_template>
            <first_frame> R  L  K  R  L  R  K  R  R  S  L  F  Q  E  D  F  M  N  F  S  R   : G  L  K  S  C  T  V  N  Y  L  K  R  K  Y  *  R  L  L  C  R  V  R  W  T  G  K  R  G  W  M  R  L  S  R  R :   L  F  T  S  S  M  R  S  D  S  S  H  W  R  I  L  K  K  M  C  P  G  </first_frame>
            <second_frame>  G  *  K  G  *  G  K  G  G  A  Y  F  K  R  I  S  *  T  S  A  E  :  D  *  R  A  A  L  *  I  T  *  R  E  N  I  D  G  Y  F  A  E  *  D  G  R  G  R  E  V  G  *  G  F  Q  G   : G  C  S  Q  V  L  *  D  Q  T  A  V  T  G  G  Y  *  R  R  C  V  L  G </second_frame>
            <third_frame>   A  E  K  A  K  E  K  E  E  L  I  S  R  G  F  H  E  L  Q  Q  R :   I  E  E  L  H  C  E  L  L  E  E  K  I  L  T  A  T  L  Q  S  E  M  D  G  E  E  R  L  D  E  A  F  K  E  :  V  V  H  K  F  Y  E  I  R  Q  Q  S  L  E  D  I  E  E  D  V  S  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0092H13.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65390" stop="65329"/>
                    <exon start="64363" stop="64261"/>
                    <exon start="64045" stop="63980"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEKAKEKEELISRGFHELQQRIEELHCELLEEKILTATLQSEMDGEERLDEAFKEVVHKFYEIRQQSLEDIEEDVSW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="71984" PGL_stop="69830"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71984" e_stop="71866"/>
            <exon e_start="71708" e_stop="71491"/>
            <exon e_start="71181" e_stop="71097"/>
            <exon e_start="70505" e_stop="70422"/>
            <exon e_start="70180" e_stop="69830"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="0.992"/>
          <exon-intron don_prob="0.976" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.838" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="71984" e_stop="71866" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71865" i_stop="71709" i_length="157"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71708" e_stop="71491" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.973">
            <gDNA_intron_boundary i_start="71490" i_stop="71182" i_length="309"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71181" e_stop="71097" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.983">
            <gDNA_intron_boundary i_start="71096" i_stop="70506" i_length="591"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70505" e_stop="70422" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.838" acc_prob="0.996">
            <gDNA_intron_boundary i_start="70421" i_stop="70181" i_length="241"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="70180" e_stop="69830" e_length="351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71984" stop="71866"/>
              <exon start="71708" stop="71491"/>
              <exon start="71181" stop="71097"/>
              <exon start="70505" stop="70422"/>
              <exon start="70180" stop="69830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700926" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAAGAAGCTGCTCTTAAAGCTGGGGTCCGTAAGCATGGACCAGGCAAATGGCGGACGATCCTCAAGGACCCAGTGTTTAGCGGAGTGTTGTACTCGCGTTCAAATGTAGATCTAAAG : GACAAGTGGAGGAACATGAGTGTGATGGCCAACGGTTGTGGTTCTAGAGAGAAAGCAAGGTTGGCTCTCAAAAGAATGAATCAAGCCCGTAAACAGGATGAGAGGTCTTTATCTGTCTCCACTGAGGCTATAAGTGACGAGGAAATGACTGAAGCAAGGCTAGCTACTACTTCTAGTGATTCTCTACAGATGCGTGGGTCAAAAAGATCTATCATAAG : ATTGGATAATCTTATAATGGAGGCTATAAGCAACTTGAAGGAGCCGGGTGGTTCCAACAAGACTACTATAGCAACATACATAGAG : GATCAATATTGGGCACCTACAAACTTTAAAAGGCTACTTTCAGCGAAACTGAAGTATTTAACTGCAACTAGGAGACTTGTCAAG : ATGAAGCGAAAGTATATAATAGCACCAACACTGGTATTATCTGACAGAAGAAGAATTCCTTCCGTTCCTCTCTTGGAAAGCAGCCAGAGGATCTCCTCCCGGGTTGATCCGGATGATATAAACACACTTACTAAGGCTCAAGTAGATTTTGAGTTAACTAAGATGAGGAGTATGACACCTCAAGAGGCAGCAGTAGCTGCTGCACGAGCTGTTGCAGAAGCAGAAGTAGCCATAGCAGAAGCTGAGGATGCTGCCAGAGAGGCTGATGCTGCTGAAGCTGATGCCGAAGCTGCACAAGCCTTTGCAGAAGCTGCAATGAAAGCACTAGAAGGGAGAAGCATCCCAAGGATG</gDNA_template>
            <first_frame> T  K  K  L  L  L  K  L  G  S  V  S  M  D  Q  A  N  G  G  R  S  S  R  T  Q  C  L  A  E  C  C  T  R  V  Q  M  *  I  *  R :   T  S  G  G  T  *  V  *  W  P  T  V  V  V  L  E  R  K  Q  G  W  L  S  K  E  *  I  K  P  V  N  R  M  R  G  L  Y  L  S  P  L  R  L  *  V  T  R  K  *  L  K  Q  G  *  L  L  L  L  V  I  L  Y  R  C  V  G  Q  K  D  L  S  *   : D  W  I  I  L  *  W  R  L  *  A  T  *  R  S  R  V  V  P  T  R  L  L  *  Q  H  T  *  R :   I  N  I  G  H  L  Q  T  L  K  G  Y  F  Q  R  N  *  S  I  *  L  Q  L  G  D  L  S  R :   *  S  E  S  I  *  *  H  Q  H  W  Y  Y  L  T  E  E  E  F  L  P  F  L  S  W  K  A  A  R  G  S  P  P  G  L  I  R  M  I  *  T  H  L  L  R  L  K  *  I  L  S  *  L  R  *  G  V  *  H  L  K  R  Q  Q  *  L  L  H  E  L  L  Q  K  Q  K  *  P  *  Q  K  L  R  M  L  P  E  R  L  M  L  L  K  L  M  P  K  L  H  K  P  L  Q  K  L  Q  *  K  H  *  K  G  E  A  S  Q  G   </first_frame>
            <second_frame>  R  R  S  C  S  *  S  W  G  P  *  A  W  T  R  Q  M  A  D  D  P  Q  G  P  S  V  *  R  S  V  V  L  A  F  K  C  R  S  K   : G  Q  V  E  E  H  E  C  D  G  Q  R  L  W  F  *  R  E  S  K  V  G  S  Q  K  N  E  S  S  P  *  T  G  *  E  V  F  I  C  L  H  *  G  Y  K  *  R  G  N  D  *  S  K  A  S  Y  Y  F  *  *  F  S  T  D  A  W  V  K  K  I  Y  H  K  :  I  G  *  S  Y  N  G  G  Y  K  Q  L  E  G  A  G  W  F  Q  Q  D  Y  Y  S  N  I  H  R   : G  S  I  L  G  T  Y  K  L  *  K  A  T  F  S  E  T  E  V  F  N  C  N  *  E  T  C  Q   : D  E  A  K  V  Y  N  S  T  N  T  G  I  I  *  Q  K  K  N  S  F  R  S  S  L  G  K  Q  P  E  D  L  L  P  G  *  S  G  *  Y  K  H  T  Y  *  G  S  S  R  F  *  V  N  *  D  E  E  Y  D  T  S  R  G  S  S  S  C  C  T  S  C  C  R  S  R  S  S  H  S  R  S  *  G  C  C  Q  R  G  *  C  C  *  S  *  C  R  S  C  T  S  L  C  R  S  C  N  E  S  T  R  R  E  K  H  P  K  D  </second_frame>
            <third_frame>   E  E  A  A  L  K  A  G  V  R  K  H  G  P  G  K  W  R  T  I  L  K  D  P  V  F  S  G  V  L  Y  S  R  S  N  V  D  L  K  :  D  K  W  R  N  M  S  V  M  A  N  G  C  G  S  R  E  K  A  R  L  A  L  K  R  M  N  Q  A  R  K  Q  D  E  R  S  L  S  V  S  T  E  A  I  S  D  E  E  M  T  E  A  R  L  A  T  T  S  S  D  S  L  Q  M  R  G  S  K  R  S  I  I  R :   L  D  N  L  I  M  E  A  I  S  N  L  K  E  P  G  G  S  N  K  T  T  I  A  T  Y  I  E  :  D  Q  Y  W  A  P  T  N  F  K  R  L  L  S  A  K  L  K  Y  L  T  A  T  R  R  L  V  K  :  M  K  R  K  Y  I  I  A  P  T  L  V  L  S  D  R  R  R  I  P  S  V  P  L  L  E  S  S  Q  R  I  S  S  R  V  D  P  D  D  I  N  T  L  T  K  A  Q  V  D  F  E  L  T  K  M  R  S  M  T  P  Q  E  A  A  V  A  A  A  R  A  V  A  E  A  E  V  A  I  A  E  A  E  D  A  A  R  E  A  D  A  A  E  A  D  A  E  A  A  Q  A  F  A  E  A  A  M  K  A  L  E  G  R  S  I  P  R  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0092H13.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71982" stop="71866"/>
                    <exon start="71708" stop="71491"/>
                    <exon start="71181" stop="71097"/>
                    <exon start="70505" stop="70422"/>
                    <exon start="70180" stop="69830"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEAALKAGVRKHGPGKWRTILKDPVFSGVLYSRSNVDLKDKWRNMSVMANGCGSREKARLALKRMNQARKQDERSLSVSTEAISDEEMTEARLATTSSDSLQMRGSKRSIIRLDNLIMEAISNLKEPGGSNKTTIATYIEDQYWAPTNFKRLLSAKLKYLTATRRLVKMKRKYIIAPTLVLSDRRRIPSVPLLESSQRISSRVDPDDINTLTKAQVDFELTKMRSMTPQEAAVAAARAVAEAEVAIAEAEDAAREADAAEADAEAAQAFAEAAMKALEGRSIPRM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="76975" PGL_stop="78998"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76975" e_stop="77038"/>
            <exon e_start="77125" e_stop="77200"/>
            <exon e_start="77402" e_stop="77461"/>
            <exon e_start="77622" e_stop="77806"/>
            <exon e_start="77936" e_stop="78032"/>
            <exon e_start="78150" e_stop="78236"/>
            <exon e_start="78337" e_stop="78395"/>
            <exon e_start="78592" e_stop="78683"/>
            <exon e_start="78770" e_stop="78847"/>
            <exon e_start="78954" e_stop="78998"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.648" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.706" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.335" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.871" acc_prob="0.792" e_score="1.000"/>
          <exon-intron don_prob="0.094" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.613" acc_prob="0.611" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76975" e_stop="77038" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.925">
            <gDNA_intron_boundary i_start="77039" i_stop="77124" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77125" e_stop="77200" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="0.648" acc_prob="0.996">
            <gDNA_intron_boundary i_start="77201" i_stop="77401" i_length="201"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77402" e_stop="77461" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.706" acc_prob="0.991">
            <gDNA_intron_boundary i_start="77462" i_stop="77621" i_length="160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77622" e_stop="77806" e_length="185"/>
          </exon>
          <intron i_serial="4" don_prob="0.335" acc_prob="0.890">
            <gDNA_intron_boundary i_start="77807" i_stop="77935" i_length="129"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="77936" e_stop="78032" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.973" acc_prob="0.925">
            <gDNA_intron_boundary i_start="78033" i_stop="78149" i_length="117"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="78150" e_stop="78236" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78237" i_stop="78336" i_length="100"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="78337" e_stop="78395" e_length="59"/>
          </exon>
          <intron i_serial="7" don_prob="0.871" acc_prob="0.792">
            <gDNA_intron_boundary i_start="78396" i_stop="78591" i_length="196"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="78592" e_stop="78683" e_length="92"/>
          </exon>
          <intron i_serial="8" don_prob="0.094" acc_prob="0.976">
            <gDNA_intron_boundary i_start="78684" i_stop="78769" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="78770" e_stop="78847" e_length="78"/>
          </exon>
          <intron i_serial="9" don_prob="0.613" acc_prob="0.611">
            <gDNA_intron_boundary i_start="78848" i_stop="78953" i_length="106"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="78954" e_stop="78998" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76975" stop="77038"/>
              <exon start="77125" stop="77200"/>
              <exon start="77402" stop="77461"/>
              <exon start="77622" stop="77806"/>
              <exon start="77936" stop="78032"/>
              <exon start="78150" stop="78236"/>
              <exon start="78337" stop="78395"/>
              <exon start="78592" stop="78683"/>
              <exon start="78770" stop="78847"/>
              <exon start="78954" stop="78998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555396" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATGATTGCATCAGTTATTCCAGCATTAGCTGGTTTTCTTGGAGTTTGGAGAATTGTTACAAG : GTTCTTGTGTCCGCTTTCTAAGGCTCCACTGGTGTTGCTTGTTGGCATTGGGCTATATGAGCAAGGTTTTCCACTT : CTGGGAGAATGTGTTGAAATTGGACTTCCGGAGTTAGTTCTACTCATATTGTTGTCTCAA : TTCATTCCTCATATGTGGAAATTAAAGCTACCCATATTTGAGCGATTTGCTGTCCTGTTATCAGTTGGAATAGTGTGGGCATTTGCAGCCCTTCTCACAGTAGCAGGTGCATACAAGAACAGACCCCTACAGACTCAGTTCAGTTGCCGAGTTGATCGCTCTGGGCTTGTTAGTGGAGCTTCATG : GATAAGATTTCCTTACCCATTGCAATGGGGTATTCCCAATGTTGATGCTGGACAAGTCTTTATGATGATGGCTGCAGTTTTTGTTTCTCTCGTTGAG : TCTACTGGAGGATTTATTGCAGCTGCAAGATATGGAAGTGCAACATTTTGCCCAGCTTCTGTGCTGAGCCGTGGTGCTGGATGGCTG : GGGTTAAGTACGTTGATCAATGGTTTATGGGGAACCCCCAGTGGATCTACTGTATCAGT : TGAAAATGTAGGTCTATTAGCATTGACACGAGTTGGAAGCAGAAGAGTAATTCAAATCTCTGCAGTATTTATGCTTTTCTTTTCTGTGTTAG : GAAAATTTGGAGCTATTCTTGCTTCAATACCTTTGCCAATCATTGGAGCTTTATATTGTGTCTTGTTTGCCCTCATGT : CTGCAGCTGGTTTTGATTTACTACAATTCTGCAACCTCAACAGCT</gDNA_template>
            <first_frame> *  *  L  H  Q  L  F  Q  H  *  L  V  F  L  E  F  G  E  L  L  Q   : G  S  C  V  R  F  L  R  L  H  W  C  C  L  L  A  L  G  Y  M  S  K  V  F  H  F :   W  E  N  V  L  K  L  D  F  R  S  *  F  Y  S  Y  C  C  L  N :   S  F  L  I  C  G  N  *  S  Y  P  Y  L  S  D  L  L  S  C  Y  Q  L  E  *  C  G  H  L  Q  P  F  S  Q  *  Q  V  H  T  R  T  D  P  Y  R  L  S  S  V  A  E  L  I  A  L  G  L  L  V  E  L  H   : G  *  D  F  L  T  H  C  N  G  V  F  P  M  L  M  L  D  K  S  L  *  *  W  L  Q  F  L  F  L  S  L  S :   L  L  E  D  L  L  Q  L  Q  D  M  E  V  Q  H  F  A  Q  L  L  C  *  A  V  V  L  D  G  W :   G  *  V  R  *  S  M  V  Y  G  E  P  P  V  D  L  L  Y  Q   : L  K  M  *  V  Y  *  H  *  H  E  L  E  A  E  E  *  F  K  S  L  Q  Y  L  C  F  S  F  L  C  *  :  E  N  L  E  L  F  L  L  Q  Y  L  C  Q  S  L  E  L  Y  I  V  S  C  L  P  S  C  :  L  Q  L  V  L  I  Y  Y  N  S  A  T  S  T  A </first_frame>
            <second_frame>  D  D  C  I  S  Y  S  S  I  S  W  F  S  W  S  L  E  N  C  Y  K  :  V  L  V  S  A  F  *  G  S  T  G  V  A  C  W  H  W  A  I  *  A  R  F  S  T   : S  G  R  M  C  *  N  W  T  S  G  V  S  S  T  H  I  V  V  S   : I  H  S  S  Y  V  E  I  K  A  T  H  I  *  A  I  C  C  P  V  I  S  W  N  S  V  G  I  C  S  P  S  H  S  S  R  C  I  Q  E  Q  T  P  T  D  S  V  Q  L  P  S  *  S  L  W  A  C  *  W  S  F  M  :  D  K  I  S  L  P  I  A  M  G  Y  S  Q  C  *  C  W  T  S  L  Y  D  D  G  C  S  F  C  F  S  R  *   : V  Y  W  R  I  Y  C  S  C  K  I  W  K  C  N  I  L  P  S  F  C  A  E  P  W  C  W  M  A   : G  V  K  Y  V  D  Q  W  F  M  G  N  P  Q  W  I  Y  C  I  S  :  *  K  C  R  S  I  S  I  D  T  S  W  K  Q  K  S  N  S  N  L  C  S  I  Y  A  F  L  F  C  V  R :   K  I  W  S  Y  S  C  F  N  T  F  A  N  H  W  S  F  I  L  C  L  V  C  P  H  V :   C  S  W  F  *  F  T  T  I  L  Q  P  Q  Q   </second_frame>
            <third_frame>   M  I  A  S  V  I  P  A  L  A  G  F  L  G  V  W  R  I  V  T  R :   F  L  C  P  L  S  K  A  P  L  V  L  L  V  G  I  G  L  Y  E  Q  G  F  P  L  :  L  G  E  C  V  E  I  G  L  P  E  L  V  L  L  I  L  L  S  Q  :  F  I  P  H  M  W  K  L  K  L  P  I  F  E  R  F  A  V  L  L  S  V  G  I  V  W  A  F  A  A  L  L  T  V  A  G  A  Y  K  N  R  P  L  Q  T  Q  F  S  C  R  V  D  R  S  G  L  V  S  G  A  S  W :   I  R  F  P  Y  P  L  Q  W  G  I  P  N  V  D  A  G  Q  V  F  M  M  M  A  A  V  F  V  S  L  V  E  :  S  T  G  G  F  I  A  A  A  R  Y  G  S  A  T  F  C  P  A  S  V  L  S  R  G  A  G  W  L  :  G  L  S  T  L  I  N  G  L  W  G  T  P  S  G  S  T  V  S  V :   E  N  V  G  L  L  A  L  T  R  V  G  S  R  R  V  I  Q  I  S  A  V  F  M  L  F  F  S  V  L   : G  K  F  G  A  I  L  A  S  I  P  L  P  I  I  G  A  L  Y  C  V  L  F  A  L  M   : S  A  A  G  F  D  L  L  Q  F  C  N  L  N  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0092H13.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76977" stop="77038"/>
                    <exon start="77125" stop="77200"/>
                    <exon start="77402" stop="77461"/>
                    <exon start="77622" stop="77806"/>
                    <exon start="77936" stop="78032"/>
                    <exon start="78150" stop="78236"/>
                    <exon start="78337" stop="78395"/>
                    <exon start="78592" stop="78683"/>
                    <exon start="78770" stop="78847"/>
                    <exon start="78954" stop="78997"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MIASVIPALAGFLGVWRIVTRFLCPLSKAPLVLLVGIGLYEQGFPLLGECVEIGLPELVLLILLSQFIPHMWKLKLPIFERFAVLLSVGIVWAFAALLTVAGAYKNRPLQTQFSCRVDRSGLVSGASWIRFPYPLQWGIPNVDAGQVFMMMAAVFVSLVESTGGFIAAARYGSATFCPASVLSRGAGWLGLSTLINGLWGTPSGSTVSVENVGLLALTRVGSRRVIQISAVFMLFFSVLGKFGAILASIPLPIIGALYCVLFALMSAAGFDLLQFCNLNS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="86117" PGL_stop="86620"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86117" e_stop="86152"/>
            <exon e_start="86313" e_stop="86620"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86117" e_stop="86152" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.993">
            <gDNA_intron_boundary i_start="86153" i_stop="86312" i_length="160"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="86313" e_stop="86620" e_length="308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86117" stop="86152"/>
              <exon start="86313" stop="86620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86355" stop="86620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222511" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTTTACTACCTGGAAACAAATTTCAAGAAAATCA : ATGGTTTGAAGAGAAGAGGTGGGGATAACAGCTATCAGTTTTTTTTTTTTTTAATTAAAAAAAGTGCTGATGTTAAATTGCAGCCAAGTGAATGTTTAGAAAGTGGGAAGGAGTTAAATTTGTCAAAGCAAAAGGAATTGAATCTCCAAAGGGATTCTTGTTCCTTTTTCTTTTTTCTGTTTTTTTTTTTTTGGTTTTCTTTTGGCTGTCAATGCATTGGGAAACAGCTTTAAGAGAAAAAAAATGGGAGTTAATTTCCTCTCTAATTATCTTGTTTGTCAATGAATAGTAGCTACAGTTTAGCTCTT</gDNA_template>
            <first_frame> I  F  T  T  W  K  Q  I  S  R  K  S  :  M  V  *  R  E  E  V  G  I  T  A  I  S  F  F  F  F  *  L  K  K  V  L  M  L  N  C  S  Q  V  N  V  *  K  V  G  R  S  *  I  C  Q  S  K  R  N  *  I  S  K  G  I  L  V  P  F  S  F  F  C  F  F  F  F  G  F  L  L  A  V  N  A  L  G  N  S  F  K  R  K  K  M  G  V  N  F  L  S  N  Y  L  V  C  Q  *  I  V  A  T  V  *  L   </first_frame>
            <second_frame>  S  L  L  P  G  N  K  F  Q  E  N  Q :   W  F  E  E  K  R  W  G  *  Q  L  S  V  F  F  F  F  N  *  K  K  C  *  C  *  I  A  A  K  *  M  F  R  K  W  E  G  V  K  F  V  K  A  K  G  I  E  S  P  K  G  F  L  F  L  F  L  F  S  V  F  F  F  L  V  F  F  W  L  S  M  H  W  E  T  A  L  R  E  K  K  W  E  L  I  S  S  L  I  I  L  F  V  N  E  *  *  L  Q  F  S  S  </second_frame>
            <third_frame>   L  Y  Y  L  E  T  N  F  K  K  I   : N  G  L  K  R  R  G  G  D  N  S  Y  Q  F  F  F  F  L  I  K  K  S  A  D  V  K  L  Q  P  S  E  C  L  E  S  G  K  E  L  N  L  S  K  Q  K  E  L  N  L  Q  R  D  S  C  S  F  F  F  F  L  F  F  F  F  W  F  S  F  G  C  Q  C  I  G  K  Q  L  *  E  K  K  N  G  S  *  F  P  L  *  L  S  C  L  S  M  N  S  S  Y  S  L  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0092H13.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86119" stop="86152"/>
                    <exon start="86313" stop="86545"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYYLETNFKKINGLKRRGGDNSYQFFFFLIKKSADVKLQPSECLESGKELNLSKQKELNLQRDSCSFFFFLFFFFWFSFGCQCIGKQL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0092H13.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86404" stop="86601"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MFRKWEGVKFVKAKGIESPKGFLFLFLFSVFFFLVFFWLSMHWETALREKKWELISSLIILFVNE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="98146" PGL_stop="89913"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98146" e_stop="97699"/>
            <exon e_start="96663" e_stop="96427"/>
            <exon e_start="96278" e_stop="96150"/>
            <exon e_start="95551" e_stop="95391"/>
            <exon e_start="94469" e_stop="94223"/>
            <exon e_start="90411" e_stop="89913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.225" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.931" e_score="0.994"/>
          <exon-intron don_prob="0.922" acc_prob="1.000" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98146" e_stop="97699" e_length="448"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="97698" i_stop="96664" i_length="1035"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96663" e_stop="96427" e_length="237"/>
          </exon>
          <intron i_serial="2" don_prob="0.225" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96426" i_stop="96279" i_length="148"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96278" e_stop="96150" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96149" i_stop="95552" i_length="598"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="95551" e_stop="95391" e_length="161"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.931">
            <gDNA_intron_boundary i_start="95390" i_stop="94470" i_length="921"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="94469" e_stop="94223" e_length="247"/>
          </exon>
          <intron i_serial="5" don_prob="0.922" acc_prob="1.000">
            <gDNA_intron_boundary i_start="94222" i_stop="90412" i_length="3811"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90411" e_stop="89913" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98146" stop="97699"/>
              <exon start="96663" stop="96427"/>
              <exon start="96278" stop="96155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98143" stop="97699"/>
              <exon start="96663" stop="96427"/>
              <exon start="96278" stop="96166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98142" stop="97699"/>
              <exon start="96663" stop="96487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98142" stop="97699"/>
              <exon start="96663" stop="96501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98142" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98141" stop="97699"/>
              <exon start="96663" stop="96427"/>
              <exon start="96278" stop="96159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98140" stop="97699"/>
              <exon start="96663" stop="96427"/>
              <exon start="96278" stop="96249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98072" stop="97767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97736" stop="97699"/>
              <exon start="96663" stop="96427"/>
              <exon start="96278" stop="96180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96619" stop="96427"/>
              <exon start="96278" stop="96150"/>
              <exon start="95551" stop="95518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96275" stop="96150"/>
              <exon start="95551" stop="95391"/>
              <exon start="94469" stop="94223"/>
              <exon start="90411" stop="90177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94388" stop="94223"/>
              <exon start="90411" stop="89913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213368" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90334" stop="89970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90297" stop="89944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90255" stop="89925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265245" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCTATTAAATTATGAGGGGCGTTACTCCGCCGCAGAAGTTTTCCGTTCCGTCGCCGGACGATGACGCCGATATAATCCGACCCAACACCGTCATCCCCGGCGGCGTAACCGTGGGCGCTGCTATGCGAAAGAAGGCCACCGGGGTACGTTCATGGCTTCTGTTGGATTCAACTGGACAGACCCAAGTTGTGGAAGCCGGGAAACATGCAATTATGCGGCGGACTGGACTTCCGGCTCGTGATCTTCGCATATTGGACCCACTTCTCTCGTATCCATCTACTGTGTTGGGTCGTGAACGGGCTATCGTCATCAATTTGGAGCATATCAAGGCTATTATTACCGCCCAGGAAGTCCTCTTGCTCAACGCTAGGGATCCCTCTGTTGCTCCTTTTGTTGAAGAGGTTCAACGGAGAATTTTGCGTCATCACCAAGCTACCAAGTCCCAG : GAAGCTGGAGGGGGTGGCAATAATGCAGACTGGACAAATCTGTATGATCTGGAAGAGCCTCAGTCTGAAGAAGTTTCACCTCCGAACGTCTCTGCAAACTTCCAATCAATGGATGAGAACAAGTCTGATGGGAAGCAGCTAACGGGTGAGAATCGAGATGGGCCGAAGCTTCTCCCTTTTGAGTTTGTTGCTTTGGAGGCATGTCTGGAGGCTGCTTGCAGTTGCTTGGATAATGAG : GCAAGGACACTGGAGCAAGAAGCTCATCCTGCTTTAGATAAGCTGACTTCAAAGATTAGTACTCTCAACTTGGAACGTGTTCGTCAAATCAAAAGTCGCTTGGTTGCTATTACAGGACGTGTTCAGAAG : GTGAGAGATGAACTGGAGCATCTACTCGATGATGATGAAGATATGGCGGAGATGTATTTAACTGACAAGCTGATGGAACAACTTGAAAATTCTTCTGTTTCCTCTATAAGCGGACAAGATGGCATCGATGAGGAAGTTATTCAGTCGAACATGGATGATAG : GGTTCCTGTGGAAATCTCAATGGACGCAAATGCAGGTTCCACAAGTTATGATGCAGACACTCCACATATTGACCAACACCAGGAACGTTTGTATGGTGGCCCTAATGCTCTTAGCCGAGGTAGTCGTGGGACACATACTAGCACGACTCGGAGTGCCATAAGCAAGCATCTTGATGTAGAGGAGCTTGAAATGCTCCTAGAAGCATACTTTGTTCAAATTGACGGTACATTGAATAAACTGAACACT : CTACGTGAATATGTGGATGACACAGAAGACTACATCAACATCATGCTGGATGACAAGCAGAACCATCTGTTGCAAATGGGAGTCATGTTAACAACGGCAACTCTTGTGGTTAGCGCCTTTGTTGTTGTGGCTGGAATTTTCGGTATGAACATTAACATTGAACTGTTCGACGAGAAAAAAGCTGGGATGCCAGAATTCTTATGGACAATCGGTGGTGGTGCCACTGGCAGTCTCTTCTTATATGTAGTTGCAATTGCCTGGGGTAAGCACAAGCAATTGCTCGAGTGAACAGAGAGATTTGTGAATATATTGACATGTAATTCAATTTGACAGATAAAAAAACAAGATAAAGTGAATTTTACCATGACCTATAGTGTGCTATATAACAAGTGTATCCGATTCTCCGAAATAATTATTGAACTTGAAAATGTATATTTTAGCTCAACCATGTTTTGATGAATGGTTTCAAGTGATGGAATTCATTTTAGCTGTTATACTG</gDNA_template>
            <first_frame> I  L  L  N  Y  E  G  R  Y  S  A  A  E  V  F  R  S  V  A  G  R  *  R  R  Y  N  P  T  Q  H  R  H  P  R  R  R  N  R  G  R  C  Y  A  K  E  G  H  R  G  T  F  M  A  S  V  G  F  N  W  T  D  P  S  C  G  S  R  E  T  C  N  Y  A  A  D  W  T  S  G  S  *  S  S  H  I  G  P  T  S  L  V  S  I  Y  C  V  G  S  *  T  G  Y  R  H  Q  F  G  A  Y  Q  G  Y  Y  Y  R  P  G  S  P  L  A  Q  R  *  G  S  L  C  C  S  F  C  *  R  G  S  T  E  N  F  A  S  S  P  S  Y  Q  V  P   : G  S  W  R  G  W  Q  *  C  R  L  D  K  S  V  *  S  G  R  A  S  V  *  R  S  F  T  S  E  R  L  C  K  L  P  I  N  G  *  E  Q  V  *  W  E  A  A  N  G  *  E  S  R  W  A  E  A  S  P  F  *  V  C  C  F  G  G  M  S  G  G  C  L  Q  L  L  G  *  *   : G  K  D  T  G  A  R  S  S  S  C  F  R  *  A  D  F  K  D  *  Y  S  Q  L  G  T  C  S  S  N  Q  K  S  L  G  C  Y  Y  R  T  C  S  E   : G  E  R  *  T  G  A  S  T  R  *  *  *  R  Y  G  G  D  V  F  N  *  Q  A  D  G  T  T  *  K  F  F  C  F  L  Y  K  R  T  R  W  H  R  *  G  S  Y  S  V  E  H  G  *  *  :  G  S  C  G  N  L  N  G  R  K  C  R  F  H  K  L  *  C  R  H  S  T  Y  *  P  T  P  G  T  F  V  W  W  P  *  C  S  *  P  R  *  S  W  D  T  Y  *  H  D  S  E  C  H  K  Q  A  S  *  C  R  G  A  *  N  A  P  R  S  I  L  C  S  N  *  R  Y  I  E  *  T  E  H   : S  T  *  I  C  G  *  H  R  R  L  H  Q  H  H  A  G  *  Q  A  E  P  S  V  A  N  G  S  H  V  N  N  G  N  S  C  G  *  R  L  C  C  C  G  W  N  F  R  Y  E  H  *  H  *  T  V  R  R  E  K  S  W  D  A  R  I  L  M  D  N  R  W  W  C  H  W  Q  S  L  L  I  C  S  C  N  C  L  G  *  A  Q  A  I  A  R  V  N  R  E  I  C  E  Y  I  D  M  *  F  N  L  T  D  K  K  T  R  *  S  E  F  Y  H  D  L  *  C  A  I  *  Q  V  Y  P  I  L  R  N  N  Y  *  T  *  K  C  I  F  *  L  N  H  V  L  M  N  G  F  K  *  W  N  S  F  *  L  L  Y   </first_frame>
            <second_frame>  F  Y  *  I  M  R  G  V  T  P  P  Q  K  F  S  V  P  S  P  D  D  D  A  D  I  I  R  P  N  T  V  I  P  G  G  V  T  V  G  A  A  M  R  K  K  A  T  G  V  R  S  W  L  L  L  D  S  T  G  Q  T  Q  V  V  E  A  G  K  H  A  I  M  R  R  T  G  L  P  A  R  D  L  R  I  L  D  P  L  L  S  Y  P  S  T  V  L  G  R  E  R  A  I  V  I  N  L  E  H  I  K  A  I  I  T  A  Q  E  V  L  L  L  N  A  R  D  P  S  V  A  P  F  V  E  E  V  Q  R  R  I  L  R  H  H  Q  A  T  K  S  Q  :  E  A  G  G  G  G  N  N  A  D  W  T  N  L  Y  D  L  E  E  P  Q  S  E  E  V  S  P  P  N  V  S  A  N  F  Q  S  M  D  E  N  K  S  D  G  K  Q  L  T  G  E  N  R  D  G  P  K  L  L  P  F  E  F  V  A  L  E  A  C  L  E  A  A  C  S  C  L  D  N  E  :  A  R  T  L  E  Q  E  A  H  P  A  L  D  K  L  T  S  K  I  S  T  L  N  L  E  R  V  R  Q  I  K  S  R  L  V  A  I  T  G  R  V  Q  K  :  V  R  D  E  L  E  H  L  L  D  D  D  E  D  M  A  E  M  Y  L  T  D  K  L  M  E  Q  L  E  N  S  S  V  S  S  I  S  G  Q  D  G  I  D  E  E  V  I  Q  S  N  M  D  D  R :   V  P  V  E  I  S  M  D  A  N  A  G  S  T  S  Y  D  A  D  T  P  H  I  D  Q  H  Q  E  R  L  Y  G  G  P  N  A  L  S  R  G  S  R  G  T  H  T  S  T  T  R  S  A  I  S  K  H  L  D  V  E  E  L  E  M  L  L  E  A  Y  F  V  Q  I  D  G  T  L  N  K  L  N  T  :  L  R  E  Y  V  D  D  T  E  D  Y  I  N  I  M  L  D  D  K  Q  N  H  L  L  Q  M  G  V  M  L  T  T  A  T  L  V  V  S  A  F  V  V  V  A  G  I  F  G  M  N  I  N  I  E  L  F  D  E  K  K  A  G  M  P  E  F  L  W  T  I  G  G  G  A  T  G  S  L  F  L  Y  V  V  A  I  A  W  G  K  H  K  Q  L  L  E  *  T  E  R  F  V  N  I  L  T  C  N  S  I  *  Q  I  K  K  Q  D  K  V  N  F  T  M  T  Y  S  V  L  Y  N  K  C  I  R  F  S  E  I  I  I  E  L  E  N  V  Y  F  S  S  T  M  F  *  *  M  V  S  S  D  G  I  H  F  S  C  Y  T  </second_frame>
            <third_frame>   S  I  K  L  *  G  A  L  L  R  R  R  S  F  P  F  R  R  R  T  M  T  P  I  *  S  D  P  T  P  S  S  P  A  A  *  P  W  A  L  L  C  E  R  R  P  P  G  Y  V  H  G  F  C  W  I  Q  L  D  R  P  K  L  W  K  P  G  N  M  Q  L  C  G  G  L  D  F  R  L  V  I  F  A  Y  W  T  H  F  S  R  I  H  L  L  C  W  V  V  N  G  L  S  S  S  I  W  S  I  S  R  L  L  L  P  P  R  K  S  S  C  S  T  L  G  I  P  L  L  L  L  L  L  K  R  F  N  G  E  F  C  V  I  T  K  L  P  S  P  R :   K  L  E  G  V  A  I  M  Q  T  G  Q  I  C  M  I  W  K  S  L  S  L  K  K  F  H  L  R  T  S  L  Q  T  S  N  Q  W  M  R  T  S  L  M  G  S  S  *  R  V  R  I  E  M  G  R  S  F  S  L  L  S  L  L  L  W  R  H  V  W  R  L  L  A  V  A  W  I  M  R :   Q  G  H  W  S  K  K  L  I  L  L  *  I  S  *  L  Q  R  L  V  L  S  T  W  N  V  F  V  K  S  K  V  A  W  L  L  L  Q  D  V  F  R  R :   *  E  M  N  W  S  I  Y  S  M  M  M  K  I  W  R  R  C  I  *  L  T  S  *  W  N  N  L  K  I  L  L  F  P  L  *  A  D  K  M  A  S  M  R  K  L  F  S  R  T  W  M  I   : G  F  L  W  K  S  Q  W  T  Q  M  Q  V  P  Q  V  M  M  Q  T  L  H  I  L  T  N  T  R  N  V  C  M  V  A  L  M  L  L  A  E  V  V  V  G  H  I  L  A  R  L  G  V  P  *  A  S  I  L  M  *  R  S  L  K  C  S  *  K  H  T  L  F  K  L  T  V  H  *  I  N  *  T  L :   Y  V  N  M  W  M  T  Q  K  T  T  S  T  S  C  W  M  T  S  R  T  I  C  C  K  W  E  S  C  *  Q  R  Q  L  L  W  L  A  P  L  L  L  W  L  E  F  S  V  *  T  L  T  L  N  C  S  T  R  K  K  L  G  C  Q  N  S  Y  G  Q  S  V  V  V  P  L  A  V  S  S  Y  M  *  L  Q  L  P  G  V  S  T  S  N  C  S  S  E  Q  R  D  L  *  I  Y  *  H  V  I  Q  F  D  R  *  K  N  K  I  K  *  I  L  P  *  P  I  V  C  Y  I  T  S  V  S  D  S  P  K  *  L  L  N  L  K  M  Y  I  L  A  Q  P  C  F  D  E  W  F  Q  V  M  E  F  I  L  A  V  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0092H13.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98136" stop="97699"/>
                    <exon start="96663" stop="96427"/>
                    <exon start="96278" stop="96150"/>
                    <exon start="95551" stop="95391"/>
                    <exon start="94469" stop="94223"/>
                    <exon start="90411" stop="90124"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1497</number_coding_nucleotides>
                  <number_encoded_amino_acids>499</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMRGVTPPQKFSVPSPDDDADIIRPNTVIPGGVTVGAAMRKKATGVRSWLLLDSTGQTQVVEAGKHAIMRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQEVLLLNARDPSVAPFVEEVQRRILRHHQATKSQEAGGGGNNADWTNLYDLEEPQSEEVSPPNVSANFQSMDENKSDGKQLTGENRDGPKLLPFEFVALEACLEAACSCLDNEARTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTDKLMEQLENSSVSSISGQDGIDEEVIQSNMDDRVPVEISMDANAGSTSYDADTPHIDQHQERLYGGPNALSRGSRGTHTSTTRSAISKHLDVEELEMLLEAYFVQIDGTLNKLNTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEKKAGMPEFLWTIGGGATGSLFLYVVAIAWGKHKQLLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="95824" e_stop="95821"/>
            <exon e_start="95551" e_stop="95391"/>
            <exon e_start="94469" e_stop="94223"/>
            <exon e_start="90411" e_stop="89913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.349" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.931" e_score="0.994"/>
          <exon-intron don_prob="0.922" acc_prob="1.000" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95824" e_stop="95821" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.349" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95820" i_stop="95552" i_length="269"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="95551" e_stop="95391" e_length="161"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.931">
            <gDNA_intron_boundary i_start="95390" i_stop="94470" i_length="921"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="94469" e_stop="94223" e_length="247"/>
          </exon>
          <intron i_serial="3" don_prob="0.922" acc_prob="1.000">
            <gDNA_intron_boundary i_start="94222" i_stop="90412" i_length="3811"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90411" e_stop="89913" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95824" stop="95821"/>
              <exon start="95551" stop="95391"/>
              <exon start="94469" stop="94223"/>
              <exon start="90411" stop="90021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94388" stop="94223"/>
              <exon start="90411" stop="89913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213368" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90334" stop="89970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90297" stop="89944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90255" stop="89925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265245" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAG : GTGAGAGATGAACTGGAGCATCTACTCGATGATGATGAAGATATGGCGGAGATGTATTTAACTGACAAGCTGATGGAACAACTTGAAAATTCTTCTGTTTCCTCTATAAGCGGACAAGATGGCATCGATGAGGAAGTTATTCAGTCGAACATGGATGATAG : GGTTCCTGTGGAAATCTCAATGGACGCAAATGCAGGTTCCACAAGTTATGATGCAGACACTCCACATATTGACCAACACCAGGAACGTTTGTATGGTGGCCCTAATGCTCTTAGCCGAGGTAGTCGTGGGACACATACTAGCACGACTCGGAGTGCCATAAGCAAGCATCTTGATGTAGAGGAGCTTGAAATGCTCCTAGAAGCATACTTTGTTCAAATTGACGGTACATTGAATAAACTGAACACT : CTACGTGAATATGTGGATGACACAGAAGACTACATCAACATCATGCTGGATGACAAGCAGAACCATCTGTTGCAAATGGGAGTCATGTTAACAACGGCAACTCTTGTGGTTAGCGCCTTTGTTGTTGTGGCTGGAATTTTCGGTATGAACATTAACATTGAACTGTTCGACGAGAAAAAAGCTGGGATGCCAGAATTCTTATGGACAATCGGTGGTGGTGCCACTGGCAGTCTCTTCTTATATGTAGTTGCAATTGCCTGGGGTAAGCACAAGCAATTGCTCGAGTGAACAGAGAGATTTGTGAATATATTGACATGTAATTCAATTTGACAGATAAAAAAACAAGATAAAGTGAATTTTACCATGACCTATAGTGTGCTATATAACAAGTGTATCCGATTCTCCGAAATAATTATTGAACTTGAAAATGTATATTTTAGCTCAACCATGTTTTGATGAATGGTTTCAAGTGATGGAATTCATTTTAGCTGTTATACTG</gDNA_template>
            <first_frame> E   : G  E  R  *  T  G  A  S  T  R  *  *  *  R  Y  G  G  D  V  F  N  *  Q  A  D  G  T  T  *  K  F  F  C  F  L  Y  K  R  T  R  W  H  R  *  G  S  Y  S  V  E  H  G  *  *  :  G  S  C  G  N  L  N  G  R  K  C  R  F  H  K  L  *  C  R  H  S  T  Y  *  P  T  P  G  T  F  V  W  W  P  *  C  S  *  P  R  *  S  W  D  T  Y  *  H  D  S  E  C  H  K  Q  A  S  *  C  R  G  A  *  N  A  P  R  S  I  L  C  S  N  *  R  Y  I  E  *  T  E  H   : S  T  *  I  C  G  *  H  R  R  L  H  Q  H  H  A  G  *  Q  A  E  P  S  V  A  N  G  S  H  V  N  N  G  N  S  C  G  *  R  L  C  C  C  G  W  N  F  R  Y  E  H  *  H  *  T  V  R  R  E  K  S  W  D  A  R  I  L  M  D  N  R  W  W  C  H  W  Q  S  L  L  I  C  S  C  N  C  L  G  *  A  Q  A  I  A  R  V  N  R  E  I  C  E  Y  I  D  M  *  F  N  L  T  D  K  K  T  R  *  S  E  F  Y  H  D  L  *  C  A  I  *  Q  V  Y  P  I  L  R  N  N  Y  *  T  *  K  C  I  F  *  L  N  H  V  L  M  N  G  F  K  *  W  N  S  F  *  L  L  Y   </first_frame>
            <second_frame>  K  :  V  R  D  E  L  E  H  L  L  D  D  D  E  D  M  A  E  M  Y  L  T  D  K  L  M  E  Q  L  E  N  S  S  V  S  S  I  S  G  Q  D  G  I  D  E  E  V  I  Q  S  N  M  D  D  R :   V  P  V  E  I  S  M  D  A  N  A  G  S  T  S  Y  D  A  D  T  P  H  I  D  Q  H  Q  E  R  L  Y  G  G  P  N  A  L  S  R  G  S  R  G  T  H  T  S  T  T  R  S  A  I  S  K  H  L  D  V  E  E  L  E  M  L  L  E  A  Y  F  V  Q  I  D  G  T  L  N  K  L  N  T  :  L  R  E  Y  V  D  D  T  E  D  Y  I  N  I  M  L  D  D  K  Q  N  H  L  L  Q  M  G  V  M  L  T  T  A  T  L  V  V  S  A  F  V  V  V  A  G  I  F  G  M  N  I  N  I  E  L  F  D  E  K  K  A  G  M  P  E  F  L  W  T  I  G  G  G  A  T  G  S  L  F  L  Y  V  V  A  I  A  W  G  K  H  K  Q  L  L  E  *  T  E  R  F  V  N  I  L  T  C  N  S  I  *  Q  I  K  K  Q  D  K  V  N  F  T  M  T  Y  S  V  L  Y  N  K  C  I  R  F  S  E  I  I  I  E  L  E  N  V  Y  F  S  S  T  M  F  *  *  M  V  S  S  D  G  I  H  F  S  C  Y  T  </second_frame>
            <third_frame>   R :   *  E  M  N  W  S  I  Y  S  M  M  M  K  I  W  R  R  C  I  *  L  T  S  *  W  N  N  L  K  I  L  L  F  P  L  *  A  D  K  M  A  S  M  R  K  L  F  S  R  T  W  M  I   : G  F  L  W  K  S  Q  W  T  Q  M  Q  V  P  Q  V  M  M  Q  T  L  H  I  L  T  N  T  R  N  V  C  M  V  A  L  M  L  L  A  E  V  V  V  G  H  I  L  A  R  L  G  V  P  *  A  S  I  L  M  *  R  S  L  K  C  S  *  K  H  T  L  F  K  L  T  V  H  *  I  N  *  T  L :   Y  V  N  M  W  M  T  Q  K  T  T  S  T  S  C  W  M  T  S  R  T  I  C  C  K  W  E  S  C  *  Q  R  Q  L  L  W  L  A  P  L  L  L  W  L  E  F  S  V  *  T  L  T  L  N  C  S  T  R  K  K  L  G  C  Q  N  S  Y  G  Q  S  V  V  V  P  L  A  V  S  S  Y  M  *  L  Q  L  P  G  V  S  T  S  N  C  S  S  E  Q  R  D  L  *  I  Y  *  H  V  I  Q  F  D  R  *  K  N  K  I  K  *  I  L  P  *  P  I  V  C  Y  I  T  S  V  S  D  S  P  K  *  L  L  N  L  K  M  Y  I  L  A  Q  P  C  F  D  E  W  F  Q  V  M  E  F  I  L  A  V  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0092H13.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95823" stop="95821"/>
                    <exon start="95551" stop="95391"/>
                    <exon start="94469" stop="94223"/>
                    <exon start="90411" stop="90124"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVRDELEHLLDDDEDMAEMYLTDKLMEQLENSSVSSISGQDGIDEEVIQSNMDDRVPVEISMDANAGSTSYDADTPHIDQHQERLYGGPNALSRGSRGTHTSTTRSAISKHLDVEELEMLLEAYFVQIDGTLNKLNTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEKKAGMPEFLWTIGGGATGSLFLYVVAIAWGKHKQLLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="102478" PGL_stop="106290"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102478" e_stop="102511"/>
            <exon e_start="105845" e_stop="106271"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.765"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.765">
            <gDNA_exon_boundary e_start="102478" e_stop="102511" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="102512" i_stop="105844" i_length="3333"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="105845" e_stop="106271" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102478" stop="102511"/>
              <exon start="105845" stop="106271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723442" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGTTTATTTTTATTTATTCATTTTATTATTT : TTTTTTCTCATTAAAATAAAGTAAGAAATTGAAGACCGAAACGGTTGCCATCGGAAAATGGATATCATCGCCGTCGAGGAACACAGAAACGGCCATTTTTAAAAACCTAATTTATATATATATATATATATACACACAACTTGAAACAAAGAGAAAAATTCATTTCTTTTTCAAATCTCAACTGTGGAGAAGAACTAAGTAAGACTAGTCTTGCCGGGTTTATCAGCAGCTTGAAGAGTTTTGTCGATGAGCTTACGAGCCTTTTTGCTACGGATCTCCACTCTGACGCTGGAGCTTTTGTCCATTTTGACGTAGGGTTTCTTCGATTTCTTCAACTTCCTCACCTTCGATTTTATCGATTGAACCAAACTCTCCAATTGAATCGCCATCGCCATTGTTGGAGAAGAAATGGAGGAGATAGAAAAAT</gDNA_template>
            <first_frame> F  C  L  F  L  F  I  H  F  I  I   : F  F  S  H  *  N  K  V  R  N  *  R  P  K  R  L  P  S  E  N  G  Y  H  R  R  R  G  T  Q  K  R  P  F  L  K  T  *  F  I  Y  I  Y  I  Y  T  H  N  L  K  Q  R  E  K  F  I  S  F  S  N  L  N  C  G  E  E  L  S  K  T  S  L  A  G  F  I  S  S  L  K  S  F  V  D  E  L  T  S  L  F  A  T  D  L  H  S  D  A  G  A  F  V  H  F  D  V  G  F  L  R  F  L  Q  L  P  H  L  R  F  Y  R  L  N  Q  T  L  Q  L  N  R  H  R  H  C  W  R  R  N  G  G  D  R  K   </first_frame>
            <second_frame>  F  V  Y  F  Y  L  F  I  L  L  F  :  F  F  L  I  K  I  K  *  E  I  E  D  R  N  G  C  H  R  K  M  D  I  I  A  V  E  E  H  R  N  G  H  F  *  K  P  N  L  Y  I  Y  I  Y  I  H  T  T  *  N  K  E  K  N  S  F  L  F  Q  I  S  T  V  E  K  N  *  V  R  L  V  L  P  G  L  S  A  A  *  R  V  L  S  M  S  L  R  A  F  L  L  R  I  S  T  L  T  L  E  L  L  S  I  L  T  *  G  F  F  D  F  F  N  F  L  T  F  D  F  I  D  *  T  K  L  S  N  *  I  A  I  A  I  V  G  E  E  M  E  E  I  E  K  </second_frame>
            <third_frame>   L  F  I  F  I  Y  S  F  Y  Y  F :   F  F  S  L  K  *  S  K  K  L  K  T  E  T  V  A  I  G  K  W  I  S  S  P  S  R  N  T  E  T  A  I  F  K  N  L  I  Y  I  Y  I  Y  I  Y  T  Q  L  E  T  K  R  K  I  H  F  F  F  K  S  Q  L  W  R  R  T  K  *  D  *  S  C  R  V  Y  Q  Q  L  E  E  F  C  R  *  A  Y  E  P  F  C  Y  G  S  P  L  *  R  W  S  F  C  P  F  *  R  R  V  S  S  I  S  S  T  S  S  P  S  I  L  S  I  E  P  N  S  P  I  E  S  P  S  P  L  L  E  K  K  W  R  R  *  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0092H13.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105955" stop="106269"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIYIYIYTHNLKQREKFISFSNLNCGEELSKTSLAGFISSLKSFVDELTSLFATDLHSDAGAFVHFDVGFLRFLQLPHLRFYRLNQTLQLNRHRHCWRRNGGDRK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="105094" e_stop="105115"/>
            <exon e_start="105775" e_stop="106290"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.682"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.682">
            <gDNA_exon_boundary e_start="105094" e_stop="105115" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105116" i_stop="105774" i_length="659"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="105775" e_stop="106290" e_length="516"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105094" stop="105115"/>
              <exon start="105775" stop="106290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288465" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTATTTAATATTTTTTTCT : ATATGAACTTTAATTAGCATCCAAATTACTTATTGATCGGATAAACGTTACGAAGGAAAAAACAACCCAGTTTTTTCTCATTAAAATAAAGTAAGAAATTGAAGACCGAAACGGTTGCCATCGGAAAATGGATATCATCGCCGTCGAGGAACACAGAAACGGCCATTTTTAAAAACCTAATTTATATATATATATATATATACACACAACTTGAAACAAAGAGAAAAATTCATTTCTTTTTCAAATCTCAACTGTGGAGAAGAACTAAGTAAGACTAGTCTTGCCGGGTTTATCAGCAGCTTGAAGAGTTTTGTCGATGAGCTTACGAGCCTTTTTGCTACGGATCTCCACTCTGACGCTGGAGCTTTTGTCCATTTTGACGTAGGGTTTCTTCGATTTCTTCAACTTCCTCACCTTCGATTTTATCGATTGAACCAAACTCTCCAATTGAATCGCCATCGCCATTGTTGGAGAAGAAATGGAGGAGATAGAAAAATATTGAATGATTCACCAAAT</gDNA_template>
            <first_frame> K  V  F  N  I  F  F   : Y  M  N  F  N  *  H  P  N  Y  L  L  I  G  *  T  L  R  R  K  K  Q  P  S  F  F  S  L  K  *  S  K  K  L  K  T  E  T  V  A  I  G  K  W  I  S  S  P  S  R  N  T  E  T  A  I  F  K  N  L  I  Y  I  Y  I  Y  I  Y  T  Q  L  E  T  K  R  K  I  H  F  F  F  K  S  Q  L  W  R  R  T  K  *  D  *  S  C  R  V  Y  Q  Q  L  E  E  F  C  R  *  A  Y  E  P  F  C  Y  G  S  P  L  *  R  W  S  F  C  P  F  *  R  R  V  S  S  I  S  S  T  S  S  P  S  I  L  S  I  E  P  N  S  P  I  E  S  P  S  P  L  L  E  K  K  W  R  R  *  K  N  I  E  *  F  T  K  </first_frame>
            <second_frame>  K  Y  L  I  F  F  S  :  I  *  T  L  I  S  I  Q  I  T  Y  *  S  D  K  R  Y  E  G  K  N  N  P  V  F  S  H  *  N  K  V  R  N  *  R  P  K  R  L  P  S  E  N  G  Y  H  R  R  R  G  T  Q  K  R  P  F  L  K  T  *  F  I  Y  I  Y  I  Y  T  H  N  L  K  Q  R  E  K  F  I  S  F  S  N  L  N  C  G  E  E  L  S  K  T  S  L  A  G  F  I  S  S  L  K  S  F  V  D  E  L  T  S  L  F  A  T  D  L  H  S  D  A  G  A  F  V  H  F  D  V  G  F  L  R  F  L  Q  L  P  H  L  R  F  Y  R  L  N  Q  T  L  Q  L  N  R  H  R  H  C  W  R  R  N  G  G  D  R  K  I  L  N  D  S  P  N </second_frame>
            <third_frame>   S  I  *  Y  F  F  L :   Y  E  L  *  L  A  S  K  L  L  I  D  R  I  N  V  T  K  E  K  T  T  Q  F  F  L  I  K  I  K  *  E  I  E  D  R  N  G  C  H  R  K  M  D  I  I  A  V  E  E  H  R  N  G  H  F  *  K  P  N  L  Y  I  Y  I  Y  I  H  T  T  *  N  K  E  K  N  S  F  L  F  Q  I  S  T  V  E  K  N  *  V  R  L  V  L  P  G  L  S  A  A  *  R  V  L  S  M  S  L  R  A  F  L  L  R  I  S  T  L  T  L  E  L  L  S  I  L  T  *  G  F  F  D  F  F  N  F  L  T  F  D  F  I  D  *  T  K  L  S  N  *  I  A  I  A  I  V  G  E  E  M  E  E  I  E  K  Y  *  M  I  H  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0092H13.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105955" stop="106290"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIYIYIYTHNLKQREKFISFSNLNCGEELSKTSLAGFISSLKSFVDELTSLFATDLHSDAGAFVHFDVGFLRFLQLPHLRFYRLNQTLQLNRHRHCWRRNGGDRKILNDSPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="106245" PGL_stop="105783"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106245" e_stop="105783"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="106245" e_stop="105783" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106245" stop="105783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106245" stop="105783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690548" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAACAATGGCGATGGCGATTCAATTGGAGAGTTTGGTTCAATCGATAAAATCGAAGGTGAGGAAGTTGAAGAAATCGAAGAAACCCTACGTCAAAATGGACAAAAGCTCCAGCGTCAGAGTGGAGATCCGTAGCAAAAAGGCTCGTAAGCTCATCGACAAAACTCTTCAAGCTGCTGATAAACCCGGCAAGACTAGTCTTACTTAGTTCTTCTCCACAGTTGAGATTTGAAAAAGAAATGAATTTTTCTCTTTGTTTCAAGTTGTGTGTATATATATATATATATATAAATTAGGTTTTTAAAAATGGCCGTTTCTGTGTTCCTCGACGGCGATGATATCCATTTTCCGATGGCAACCGTTTCGGTCTTCAATTTCTTACTTTATTTTAATGAGAAAAAACTGGGTTGTTTTTTCCTTCGTAACGTTTATCCGATCAATAAGTAATTTGGATGCTAATTAAA</gDNA_template>
            <first_frame> P  T  M  A  M  A  I  Q  L  E  S  L  V  Q  S  I  K  S  K  V  R  K  L  K  K  S  K  K  P  Y  V  K  M  D  K  S  S  S  V  R  V  E  I  R  S  K  K  A  R  K  L  I  D  K  T  L  Q  A  A  D  K  P  G  K  T  S  L  T  *  F  F  S  T  V  E  I  *  K  R  N  E  F  F  S  L  F  Q  V  V  C  I  Y  I  Y  I  Y  K  L  G  F  *  K  W  P  F  L  C  S  S  T  A  M  I  S  I  F  R  W  Q  P  F  R  S  S  I  S  Y  F  I  L  M  R  K  N  W  V  V  F  S  F  V  T  F  I  R  S  I  S  N  L  D  A  N  *  </first_frame>
            <second_frame>  Q  Q  W  R  W  R  F  N  W  R  V  W  F  N  R  *  N  R  R  *  G  S  *  R  N  R  R  N  P  T  S  K  W  T  K  A  P  A  S  E  W  R  S  V  A  K  R  L  V  S  S  S  T  K  L  F  K  L  L  I  N  P  A  R  L  V  L  L  S  S  S  P  Q  L  R  F  E  K  E  M  N  F  S  L  C  F  K  L  C  V  Y  I  Y  I  Y  I  N  *  V  F  K  N  G  R  F  C  V  P  R  R  R  *  Y  P  F  S  D  G  N  R  F  G  L  Q  F  L  T  L  F  *  *  E  K  T  G  L  F  F  P  S  *  R  L  S  D  Q  *  V  I  W  M  L  I  K </second_frame>
            <third_frame>   N  N  G  D  G  D  S  I  G  E  F  G  S  I  D  K  I  E  G  E  E  V  E  E  I  E  E  T  L  R  Q  N  G  Q  K  L  Q  R  Q  S  G  D  P  *  Q  K  G  S  *  A  H  R  Q  N  S  S  S  C  *  *  T  R  Q  D  *  S  Y  L  V  L  L  H  S  *  D  L  K  K  K  *  I  F  L  F  V  S  S  C  V  Y  I  Y  I  Y  I  *  I  R  F  L  K  M  A  V  S  V  F  L  D  G  D  D  I  H  F  P  M  A  T  V  S  V  F  N  F  L  L  Y  F  N  E  K  K  L  G  C  F  F  L  R  N  V  Y  P  I  N  K  *  F  G  C  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0092H13.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106175" stop="105951"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNRRNPTSKWTKAPASEWRSVAKRLVSSSTKLFKLLINPARLVLLSSSPQLRFEKEMNFSLCFKLCVYIYIYIN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0092H13.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106245" stop="106039"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTMAMAIQLESLVQSIKSKVRKLKKSKKPYVKMDKSSSVRVEIRSKKARKLIDKTLQAADKPGKTSLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="111716" PGL_stop="108465"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111716" e_stop="111595"/>
            <exon e_start="110902" e_stop="110829"/>
            <exon e_start="110346" e_stop="110204"/>
            <exon e_start="110117" e_stop="110071"/>
            <exon e_start="109982" e_stop="109874"/>
            <exon e_start="109776" e_stop="109715"/>
            <exon e_start="109561" e_stop="109447"/>
            <exon e_start="108509" e_stop="108465"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.830" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.005" acc_prob="0.175" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.627" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111716" e_stop="111595" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.922">
            <gDNA_intron_boundary i_start="111594" i_stop="110903" i_length="692"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110902" e_stop="110829" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.919" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110828" i_stop="110347" i_length="482"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110346" e_stop="110204" e_length="143"/>
          </exon>
          <intron i_serial="3" don_prob="0.830" acc_prob="0.983">
            <gDNA_intron_boundary i_start="110203" i_stop="110118" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110117" e_stop="110071" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.005" acc_prob="0.175">
            <gDNA_intron_boundary i_start="110070" i_stop="109983" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109982" e_stop="109874" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.947">
            <gDNA_intron_boundary i_start="109873" i_stop="109777" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="109776" e_stop="109715" e_length="62"/>
          </exon>
          <intron i_serial="6" don_prob="0.905" acc_prob="0.627">
            <gDNA_intron_boundary i_start="109714" i_stop="109562" i_length="153"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="109561" e_stop="109447" e_length="115"/>
          </exon>
          <intron i_serial="7" don_prob="0.963" acc_prob="0.997">
            <gDNA_intron_boundary i_start="109446" i_stop="108510" i_length="937"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="108509" e_stop="108465" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111716" stop="111595"/>
              <exon start="110902" stop="110829"/>
              <exon start="110346" stop="110204"/>
              <exon start="110117" stop="110071"/>
              <exon start="109982" stop="109874"/>
              <exon start="109776" stop="109715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111714" stop="111595"/>
              <exon start="110902" stop="110829"/>
              <exon start="110346" stop="110204"/>
              <exon start="110117" stop="110071"/>
              <exon start="109982" stop="109874"/>
              <exon start="109776" stop="109715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111711" stop="111595"/>
              <exon start="110902" stop="110829"/>
              <exon start="110346" stop="110204"/>
              <exon start="110117" stop="110071"/>
              <exon start="109982" stop="109874"/>
              <exon start="109776" stop="109715"/>
              <exon start="109561" stop="109447"/>
              <exon start="108509" stop="108465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261732" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTGTTGTCTCGTTCACGTCAAACAACAAACAGTTTGCGGGCATTCTCATCATCTTCTTCTTCTAACCAGTCTCGTGGTGGTCTTCCCCGATTCTACTCCGATAAGCTTCCTCCTTCCAAG : GATGGCGTTGTTCGTGTCAAAGGTGATGAATTTTGGCACATGACTAGGGTCTTGAGGTTGAGAATTCATGATAG : GGTAGAACTATTTGATGGAAAAGGAGGATTAGTTGAAGGCTGTATACAGAACATTGATCAGAATGGATTGGATATTGTGGCTCTCGAGAATCCAAAGTCAGTATCTCCACATAACACACAGTGGCATGTCTATGCTGCATTCG : GTACTCTGAAGGGAGGCCGGGCCGATTGGCTTGTGGAGAAATGTACA : GAGCTAGGAGCCTGTAGTGTGACTCCCTTATTGACGGACCGGTCTCCTTCAATATCAGAAAATCGTGTAGATAGATTACAACGTGTCAATCTTGCTGCAGCTAAACAAT : GCCAACGGTTGCATGAAATGGTTCTAAATCCTCCTATAAAAATTGGTGGACTTTTACCCCTT : GTTAAAAATTCAAAGCTTTCGTTTATTGCCACGGCAGAAGCTAAACCAGTATTTAGTGCTCTAAGTTCCATCAAAAAAGAATCAACTGGACTGATGATAATTGGACCGGAAGGAG : ACTTCACGGAGAGAGAGTTAAACATGATTCTTGAGGCTGGGGCAA</gDNA_template>
            <first_frame> I  C  C  L  V  H  V  K  Q  Q  T  V  C  G  H  S  H  H  L  L  L  L  T  S  L  V  V  V  F  P  D  S  T  P  I  S  F  L  L  P  R :   M  A  L  F  V  S  K  V  M  N  F  G  T  *  L  G  S  *  G  *  E  F  M  I   : G  *  N  Y  L  M  E  K  E  D  *  L  K  A  V  Y  R  T  L  I  R  M  D  W  I  L  W  L  S  R  I  Q  S  Q  Y  L  H  I  T  H  S  G  M  S  M  L  H  S  :  V  L  *  R  E  A  G  P  I  G  L  W  R  N  V  Q :   S  *  E  P  V  V  *  L  P  Y  *  R  T  G  L  L  Q  Y  Q  K  I  V  *  I  D  Y  N  V  S  I  L  L  Q  L  N  N  :  A  N  G  C  M  K  W  F  *  I  L  L  *  K  L  V  D  F  Y  P  L :   L  K  I  Q  S  F  R  L  L  P  R  Q  K  L  N  Q  Y  L  V  L  *  V  P  S  K  K  N  Q  L  D  *  *  *  L  D  R  K  E  :  T  S  R  R  E  S  *  T  *  F  L  R  L  G  Q </first_frame>
            <second_frame>  S  V  V  S  F  T  S  N  N  K  Q  F  A  G  I  L  I  I  F  F  F  *  P  V  S  W  W  S  S  P  I  L  L  R  *  A  S  S  F  Q   : G  W  R  C  S  C  Q  R  *  *  I  L  A  H  D  *  G  L  E  V  E  N  S  *  *  :  G  R  T  I  *  W  K  R  R  I  S  *  R  L  Y  T  E  H  *  S  E  W  I  G  Y  C  G  S  R  E  S  K  V  S  I  S  T  *  H  T  V  A  C  L  C  C  I  R :   Y  S  E  G  R  P  G  R  L  A  C  G  E  M  Y   : R  A  R  S  L  *  C  D  S  L  I  D  G  P  V  S  F  N  I  R  K  S  C  R  *  I  T  T  C  Q  S  C  C  S  *  T  M :   P  T  V  A  *  N  G  S  K  S  S  Y  K  N  W  W  T  F  T  P   : C  *  K  F  K  A  F  V  Y  C  H  G  R  S  *  T  S  I  *  C  S  K  F  H  Q  K  R  I  N  W  T  D  D  N  W  T  G  R  R :   L  H  G  E  R  V  K  H  D  S  *  G  W  G   </second_frame>
            <third_frame>   L  L  S  R  S  R  Q  T  T  N  S  L  R  A  F  S  S  S  S  S  S  N  Q  S  R  G  G  L  P  R  F  Y  S  D  K  L  P  P  S  K  :  D  G  V  V  R  V  K  G  D  E  F  W  H  M  T  R  V  L  R  L  R  I  H  D  R :   V  E  L  F  D  G  K  G  G  L  V  E  G  C  I  Q  N  I  D  Q  N  G  L  D  I  V  A  L  E  N  P  K  S  V  S  P  H  N  T  Q  W  H  V  Y  A  A  F   : G  T  L  K  G  G  R  A  D  W  L  V  E  K  C  T  :  E  L  G  A  C  S  V  T  P  L  L  T  D  R  S  P  S  I  S  E  N  R  V  D  R  L  Q  R  V  N  L  A  A  A  K  Q   : C  Q  R  L  H  E  M  V  L  N  P  P  I  K  I  G  G  L  L  P  L  :  V  K  N  S  K  L  S  F  I  A  T  A  E  A  K  P  V  F  S  A  L  S  S  I  K  K  E  S  T  G  L  M  I  I  G  P  E  G   : D  F  T  E  R  E  L  N  M  I  L  E  A  G  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0092H13.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111714" stop="111595"/>
                    <exon start="110902" stop="110829"/>
                    <exon start="110346" stop="110204"/>
                    <exon start="110117" stop="110071"/>
                    <exon start="109982" stop="109874"/>
                    <exon start="109776" stop="109715"/>
                    <exon start="109561" stop="109447"/>
                    <exon start="108509" stop="108466"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSRSRQTTNSLRAFSSSSSSNQSRGGLPRFYSDKLPPSKDGVVRVKGDEFWHMTRVLRLRIHDRVELFDGKGGLVEGCIQNIDQNGLDIVALENPKSVSPHNTQWHVYAAFGTLKGGRADWLVEKCTELGACSVTPLLTDRSPSISENRVDRLQRVNLAAAKQCQRLHEMVLNPPIKIGGLLPLVKNSKLSFIATAEAKPVFSALSSIKKESTGLMIIGPEGDFTERELNMILEAGA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="117169" PGL_stop="112635"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117169" e_stop="117052"/>
            <exon e_start="116839" e_stop="116556"/>
            <exon e_start="116479" e_stop="116335"/>
            <exon e_start="116089" e_stop="115968"/>
            <exon e_start="115853" e_stop="115724"/>
            <exon e_start="114643" e_stop="114158"/>
            <exon e_start="112679" e_stop="112635"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.432" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.637" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.982" e_score="0.992"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.711"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117169" e_stop="117052" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="117051" i_stop="116840" i_length="212"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116839" e_stop="116556" e_length="284"/>
          </exon>
          <intron i_serial="2" don_prob="0.432" acc_prob="0.895">
            <gDNA_intron_boundary i_start="116555" i_stop="116480" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="116479" e_stop="116335" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.637">
            <gDNA_intron_boundary i_start="116334" i_stop="116090" i_length="245"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116089" e_stop="115968" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.966">
            <gDNA_intron_boundary i_start="115967" i_stop="115854" i_length="114"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="115853" e_stop="115724" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.901" acc_prob="0.982">
            <gDNA_intron_boundary i_start="115723" i_stop="114644" i_length="1080"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="114643" e_stop="114158" e_length="486"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="114157" i_stop="112680" i_length="1478"/>
          </intron>
          <exon e_serial="7" e_score="0.711">
            <gDNA_exon_boundary e_start="112679" e_stop="112635" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117169" stop="117052"/>
              <exon start="116839" stop="116556"/>
              <exon start="116479" stop="116335"/>
              <exon start="116089" stop="116070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117141" stop="117052"/>
              <exon start="116839" stop="116556"/>
              <exon start="116479" stop="116335"/>
              <exon start="116089" stop="115968"/>
              <exon start="115853" stop="115724"/>
              <exon start="114643" stop="114577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117136" stop="117052"/>
              <exon start="116839" stop="116556"/>
              <exon start="116479" stop="116335"/>
              <exon start="116089" stop="115968"/>
              <exon start="115853" stop="115724"/>
              <exon start="114643" stop="114610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117097" stop="117052"/>
              <exon start="116839" stop="116556"/>
              <exon start="116479" stop="116335"/>
              <exon start="116089" stop="116011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114637" stop="114158"/>
              <exon start="112679" stop="112635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114538" stop="114166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTTCTAAATAAAAAAAAAAAAGAAAAAGAATTTGATTCCCATCCATTGTCGGTGAAGTCCGTCTCTCCCGTGATTGCCATTGTTTCAAGAATCATGTTTCGCCGGTGTTTTGCTG : GATGCATCAATCTGCCTTGCATACGAAAGAAAGGCCCAGTTGATGAGGAGGAGGAGGAGGATTTTCCCGTGAAAGATGAACTTCATAAACTCACATCCCAGGACCTAAGTCGATTTACAGCCCAATTTTCTCCGGAAAATCTTGTTGGAGTCACCAACTTAGGAAAGCTCTATCGTGGGAAGATGGTCATTGATGATATTAGCAAGGATGTCGCTGTCAAGATTATAGGTATTGATAAATGGATATTTCGATATACAGGCGACGACAGACTGGAAAGATTCGAG : TATGAATTGAAATTTTTGCAAGCTCCAAGGATTAAGGGCAATCCCAATTTAGTGAAAGTGATTGGATATTGTGAAGAGGAAGAGACCTTGGGTATTGTTTATGATCTAAATCCACATGATATTTTGGAGAACTTAATTACTCGAG : CTGACTTCAATTGGATGCTGAGAGTTAGGACAGCCCTTACATTAGCTCGCTTGCTTAATTATCTGCATGATAGGAAATACCTCATTCGCAACTTTGCTCCATATCACATTGTGCTTGACCAG : GATTTCACGCCAATTATGTTTGAGTTGGGTTTGATTGTTGGAGGAGTTCTCGGTAATACAATCAATGAATCAGATATGAGATGTGCTCCATATGGCTACATCGATTCATACATATTTCAATGTGGTACTG : ATACATTCAGTGTCAAGTCTGATGTTTTTGCGTTTGGTGTTTTGCTCTTAAACTTTATAAGCAAAAAAGTTGTTGAGAAAGGAAACCCCGTAGATAATGAGGTACTTGATTTATGGGCCTTGAAGGAGTTCAAGCCCGGATGTTCACTTGTCCACCAAAGTTTTGTGGGTGATCCAGGTTTTGGTCATCTTGATGCAGTTGCAATAACAGAACTTGCTAAACGTTGTGTAGAAGATCGACCAAAGAAACGACCAAATATGAAAGAAGTTGTTGCTTGTCTAGAGAATTTACATGTTGTGTAGGACCATGGTGAAGAAATTAATGTGCATACTTGATAGTTGGGTTTTATTTCCGTTGAGTTTAGTGGATTTTGTTGTCACAGTTTGTGGAAAAACATACGTGAGTATAGGAAGAAAAGATTATTTTAGTATATATTTAAATATAAAAATTACTTATCATTTAATCAAGTGAAAGATTTTGGAGAAA : CAAACCTTAAAAAAAAAATAAATAAATAAATAAATAAATAAATGG</gDNA_template>
            <first_frame> S  F  L  N  K  K  K  K  E  K  E  F  D  S  H  P  L  S  V  K  S  V  S  P  V  I  A  I  V  S  R  I  M  F  R  R  C  F  A   : G  C  I  N  L  P  C  I  R  K  K  G  P  V  D  E  E  E  E  E  D  F  P  V  K  D  E  L  H  K  L  T  S  Q  D  L  S  R  F  T  A  Q  F  S  P  E  N  L  V  G  V  T  N  L  G  K  L  Y  R  G  K  M  V  I  D  D  I  S  K  D  V  A  V  K  I  I  G  I  D  K  W  I  F  R  Y  T  G  D  D  R  L  E  R  F  E  :  Y  E  L  K  F  L  Q  A  P  R  I  K  G  N  P  N  L  V  K  V  I  G  Y  C  E  E  E  E  T  L  G  I  V  Y  D  L  N  P  H  D  I  L  E  N  L  I  T  R   : A  D  F  N  W  M  L  R  V  R  T  A  L  T  L  A  R  L  L  N  Y  L  H  D  R  K  Y  L  I  R  N  F  A  P  Y  H  I  V  L  D  Q  :  D  F  T  P  I  M  F  E  L  G  L  I  V  G  G  V  L  G  N  T  I  N  E  S  D  M  R  C  A  P  Y  G  Y  I  D  S  Y  I  F  Q  C  G  T   : D  T  F  S  V  K  S  D  V  F  A  F  G  V  L  L  L  N  F  I  S  K  K  V  V  E  K  G  N  P  V  D  N  E  V  L  D  L  W  A  L  K  E  F  K  P  G  C  S  L  V  H  Q  S  F  V  G  D  P  G  F  G  H  L  D  A  V  A  I  T  E  L  A  K  R  C  V  E  D  R  P  K  K  R  P  N  M  K  E  V  V  A  C  L  E  N  L  H  V  V  *  D  H  G  E  E  I  N  V  H  T  *  *  L  G  F  I  S  V  E  F  S  G  F  C  C  H  S  L  W  K  N  I  R  E  Y  R  K  K  R  L  F  *  Y  I  F  K  Y  K  N  Y  L  S  F  N  Q  V  K  D  F  G  E   : T  N  L  K  K  K  I  N  K  *  I  N  K  *  M  </first_frame>
            <second_frame>  L  F  *  I  K  K  K  K  K  K  N  L  I  P  I  H  C  R  *  S  P  S  L  P  *  L  P  L  F  Q  E  S  C  F  A  G  V  L  L  :  D  A  S  I  C  L  A  Y  E  R  K  A  Q  L  M  R  R  R  R  R  I  F  P  *  K  M  N  F  I  N  S  H  P  R  T  *  V  D  L  Q  P  N  F  L  R  K  I  L  L  E  S  P  T  *  E  S  S  I  V  G  R  W  S  L  M  I  L  A  R  M  S  L  S  R  L  *  V  L  I  N  G  Y  F  D  I  Q  A  T  T  D  W  K  D  S  S :   M  N  *  N  F  C  K  L  Q  G  L  R  A  I  P  I  *  *  K  *  L  D  I  V  K  R  K  R  P  W  V  L  F  M  I  *  I  H  M  I  F  W  R  T  *  L  L  E  :  L  T  S  I  G  C  *  E  L  G  Q  P  L  H  *  L  A  C  L  I  I  C  M  I  G  N  T  S  F  A  T  L  L  H  I  T  L  C  L  T  R :   I  S  R  Q  L  C  L  S  W  V  *  L  L  E  E  F  S  V  I  Q  S  M  N  Q  I  *  D  V  L  H  M  A  T  S  I  H  T  Y  F  N  V  V  L  :  I  H  S  V  S  S  L  M  F  L  R  L  V  F  C  S  *  T  L  *  A  K  K  L  L  R  K  E  T  P  *  I  M  R  Y  L  I  Y  G  P  *  R  S  S  S  P  D  V  H  L  S  T  K  V  L  W  V  I  Q  V  L  V  I  L  M  Q  L  Q  *  Q  N  L  L  N  V  V  *  K  I  D  Q  R  N  D  Q  I  *  K  K  L  L  L  V  *  R  I  Y  M  L  C  R  T  M  V  K  K  L  M  C  I  L  D  S  W  V  L  F  P  L  S  L  V  D  F  V  V  T  V  C  G  K  T  Y  V  S  I  G  R  K  D  Y  F  S  I  Y  L  N  I  K  I  T  Y  H  L  I  K  *  K  I  L  E  K  :  Q  T  L  K  K  K  *  I  N  K  *  I  N  K  W </second_frame>
            <third_frame>   F  S  K  *  K  K  K  R  K  R  I  *  F  P  S  I  V  G  E  V  R  L  S  R  D  C  H  C  F  K  N  H  V  S  P  V  F  C  W :   M  H  Q  S  A  L  H  T  K  E  R  P  S  *  *  G  G  G  G  G  F  S  R  E  R  *  T  S  *  T  H  I  P  G  P  K  S  I  Y  S  P  I  F  S  G  K  S  C  W  S  H  Q  L  R  K  A  L  S  W  E  D  G  H  *  *  Y  *  Q  G  C  R  C  Q  D  Y  R  Y  *  *  M  D  I  S  I  Y  R  R  R  Q  T  G  K  I  R   : V  *  I  E  I  F  A  S  S  K  D  *  G  Q  S  Q  F  S  E  S  D  W  I  L  *  R  G  R  D  L  G  Y  C  L  *  S  K  S  T  *  Y  F  G  E  L  N  Y  S  S :   *  L  Q  L  D  A  E  S  *  D  S  P  Y  I  S  S  L  A  *  L  S  A  *  *  E  I  P  H  S  Q  L  C  S  I  S  H  C  A  *  P   : G  F  H  A  N  Y  V  *  V  G  F  D  C  W  R  S  S  R  *  Y  N  Q  *  I  R  Y  E  M  C  S  I  W  L  H  R  F  I  H  I  S  M  W  Y  * :   Y  I  Q  C  Q  V  *  C  F  C  V  W  C  F  A  L  K  L  Y  K  Q  K  S  C  *  E  R  K  P  R  R  *  *  G  T  *  F  M  G  L  E  G  V  Q  A  R  M  F  T  C  P  P  K  F  C  G  *  S  R  F  W  S  S  *  C  S  C  N  N  R  T  C  *  T  L  C  R  R  S  T  K  E  T  T  K  Y  E  R  S  C  C  L  S  R  E  F  T  C  C  V  G  P  W  *  R  N  *  C  A  Y  L  I  V  G  F  Y  F  R  *  V  *  W  I  L  L  S  Q  F  V  E  K  H  T  *  V  *  E  E  K  I  I  L  V  Y  I  *  I  *  K  L  L  I  I  *  S  S  E  R  F  W  R  N :   K  P  *  K  K  N  K  *  I  N  K  *  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0092H13.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117169" stop="117052"/>
                    <exon start="116839" stop="116556"/>
                    <exon start="116479" stop="116335"/>
                    <exon start="116089" stop="115968"/>
                    <exon start="115853" stop="115724"/>
                    <exon start="114643" stop="114342"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFLNKKKKEKEFDSHPLSVKSVSPVIAIVSRIMFRRCFAGCINLPCIRKKGPVDEEEEEDFPVKDELHKLTSQDLSRFTAQFSPENLVGVTNLGKLYRGKMVIDDISKDVAVKIIGIDKWIFRYTGDDRLERFEYELKFLQAPRIKGNPNLVKVIGYCEEEETLGIVYDLNPHDILENLITRADFNWMLRVRTALTLARLLNYLHDRKYLIRNFAPYHIVLDQDFTPIMFELGLIVGGVLGNTINESDMRCAPYGYIDSYIFQCGTDTFSVKSDVFAFGVLLLNFISKKVVEKGNPVDNEVLDLWALKEFKPGCSLVHQSFVGDPGFGHLDAVAITELAKRCVEDRPKKRPNMKEVVACLENLHVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="117135" e_stop="117052"/>
            <exon e_start="116839" e_stop="116556"/>
            <exon e_start="116479" e_stop="116304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.432" acc_prob="0.895" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117135" e_stop="117052" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="117051" i_stop="116840" i_length="212"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116839" e_stop="116556" e_length="284"/>
          </exon>
          <intron i_serial="2" don_prob="0.432" acc_prob="0.895">
            <gDNA_intron_boundary i_start="116555" i_stop="116480" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="116479" e_stop="116304" e_length="176"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117135" stop="117052"/>
              <exon start="116839" stop="116556"/>
              <exon start="116479" stop="116304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306089" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGATTCCCATCCATTGTCGGTGAAGTCCGTCTCTCCCGTGATTGCCATTGTTTCAAGAATCATGTTTCGCCGGTGTTTTGCTG : GATGCATCAATCTGCCTTGCATACGAAAGAAAGGCCCAGTTGATGAGGAGGAGGAGGAGGATTTTCCCGTGAAAGATGAACTTCATAAACTCACATCCCAGGACCTAAGTCGATTTACAGCCCAATTTTCTCCGGAAAATCTTGTTGGAGTCACCAACTTAGGAAAGCTCTATCGTGGGAAGATGGTCATTGATGATATTAGCAAGGATGTCGCTGTCAAGATTATAGGTATTGATAAATGGATATTTCGATATACAGGCGACGACAGACTGGAAAGATTCGAG : TATGAATTGAAATTTTTGCAAGCTCCAAGGATTAAGGGCAATCCCAATTTAGTGAAAGTGATTGGATATTGTGAAGAGGAAGAGACCTTGGGTATTGTTTATGATCTAAATCCACATGATATTTTGGAGAACTTAATTACTCGAGGTGTGCTTCTATCTTTACTCATCTTTTATCT</gDNA_template>
            <first_frame> L  I  P  I  H  C  R  *  S  P  S  L  P  *  L  P  L  F  Q  E  S  C  F  A  G  V  L  L  :  D  A  S  I  C  L  A  Y  E  R  K  A  Q  L  M  R  R  R  R  R  I  F  P  *  K  M  N  F  I  N  S  H  P  R  T  *  V  D  L  Q  P  N  F  L  R  K  I  L  L  E  S  P  T  *  E  S  S  I  V  G  R  W  S  L  M  I  L  A  R  M  S  L  S  R  L  *  V  L  I  N  G  Y  F  D  I  Q  A  T  T  D  W  K  D  S  S :   M  N  *  N  F  C  K  L  Q  G  L  R  A  I  P  I  *  *  K  *  L  D  I  V  K  R  K  R  P  W  V  L  F  M  I  *  I  H  M  I  F  W  R  T  *  L  L  E  V  C  F  Y  L  Y  S  S  F  I  </first_frame>
            <second_frame>  *  F  P  S  I  V  G  E  V  R  L  S  R  D  C  H  C  F  K  N  H  V  S  P  V  F  C  W :   M  H  Q  S  A  L  H  T  K  E  R  P  S  *  *  G  G  G  G  G  F  S  R  E  R  *  T  S  *  T  H  I  P  G  P  K  S  I  Y  S  P  I  F  S  G  K  S  C  W  S  H  Q  L  R  K  A  L  S  W  E  D  G  H  *  *  Y  *  Q  G  C  R  C  Q  D  Y  R  Y  *  *  M  D  I  S  I  Y  R  R  R  Q  T  G  K  I  R   : V  *  I  E  I  F  A  S  S  K  D  *  G  Q  S  Q  F  S  E  S  D  W  I  L  *  R  G  R  D  L  G  Y  C  L  *  S  K  S  T  *  Y  F  G  E  L  N  Y  S  R  C  A  S  I  F  T  H  L  L  S </second_frame>
            <third_frame>   D  S  H  P  L  S  V  K  S  V  S  P  V  I  A  I  V  S  R  I  M  F  R  R  C  F  A   : G  C  I  N  L  P  C  I  R  K  K  G  P  V  D  E  E  E  E  E  D  F  P  V  K  D  E  L  H  K  L  T  S  Q  D  L  S  R  F  T  A  Q  F  S  P  E  N  L  V  G  V  T  N  L  G  K  L  Y  R  G  K  M  V  I  D  D  I  S  K  D  V  A  V  K  I  I  G  I  D  K  W  I  F  R  Y  T  G  D  D  R  L  E  R  F  E  :  Y  E  L  K  F  L  Q  A  P  R  I  K  G  N  P  N  L  V  K  V  I  G  Y  C  E  E  E  E  T  L  G  I  V  Y  D  L  N  P  H  D  I  L  E  N  L  I  T  R  G  V  L  L  S  L  L  I  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0092H13.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117133" stop="117052"/>
                    <exon start="116839" stop="116556"/>
                    <exon start="116479" stop="116306"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSHPLSVKSVSPVIAIVSRIMFRRCFAGCINLPCIRKKGPVDEEEEEDFPVKDELHKLTSQDLSRFTAQFSPENLVGVTNLGKLYRGKMVIDDISKDVAVKIIGIDKWIFRYTGDDRLERFEYELKFLQAPRIKGNPNLVKVIGYCEEEETLGIVYDLNPHDILENLITRGVLLSLLIFY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 83 chains have been computed
$ 
$ memory statistics:
$ 226608 bytes spliced alignments in total
$ 50 spliced alignments have been stored
$ 4532 bytes was the average size of a spliced alignment
$ 23368 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1669 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 104 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:17:28
-->
